Citrus Sinensis ID: 011959
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 474 | 2.2.26 [Sep-21-2011] | |||||||
| Q85WB7 | 473 | Glutamate-1-semialdehyde | N/A | no | 0.997 | 1.0 | 0.833 | 0.0 | |
| Q42522 | 472 | Glutamate-1-semialdehyde | yes | no | 0.995 | 1.0 | 0.839 | 0.0 | |
| P42799 | 474 | Glutamate-1-semialdehyde | no | no | 1.0 | 1.0 | 0.822 | 0.0 | |
| P31593 | 478 | Glutamate-1-semialdehyde | N/A | no | 0.978 | 0.970 | 0.828 | 0.0 | |
| Q40147 | 481 | Glutamate-1-semialdehyde | N/A | no | 0.978 | 0.964 | 0.813 | 0.0 | |
| P45621 | 466 | Glutamate-1-semialdehyde | yes | no | 0.964 | 0.980 | 0.823 | 0.0 | |
| Q6YZE2 | 478 | Glutamate-1-semialdehyde | yes | no | 0.947 | 0.939 | 0.812 | 0.0 | |
| P18492 | 469 | Glutamate-1-semialdehyde | N/A | no | 0.943 | 0.953 | 0.810 | 0.0 | |
| B2J7M9 | 432 | Glutamate-1-semialdehyde | yes | no | 0.902 | 0.990 | 0.732 | 0.0 | |
| B1X023 | 433 | Glutamate-1-semialdehyde | yes | no | 0.892 | 0.976 | 0.735 | 0.0 |
| >sp|Q85WB7|GSA_BRANA Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Brassica napus GN=GSA PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/474 (83%), Positives = 439/474 (92%), Gaps = 1/474 (0%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVA 60
M+AT+TG G LG SCSSK++ R SSS S+RCS+KMSVSV+E++K+FTL+KSEEAFN A
Sbjct: 1 MSATLTGSGTALGFSCSSKISKRVSSSP-STRCSIKMSVSVDEKKKSFTLQKSEEAFNAA 59
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 60 KNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEV 119
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT
Sbjct: 120 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTN 179
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+E+ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+ LF
Sbjct: 180 KEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIEAVAKLF 239
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
E +KGEI+A+ILEPVVGNSGFI P P+F+N +R++TK+NGALLIFDEVMTGFRLAYGGAQ
Sbjct: 240 EAHKGEISAVILEPVVGNSGFITPTPEFINGLRQLTKDNGALLIFDEVMTGFRLAYGGAQ 299
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 300 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 359
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRLK+PGTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF DAK
Sbjct: 360 LKRLKQPGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFADAK 419
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
KS+T KF +F+RGMLEEGVYFAPSQFEAGFTSLAH+S+DIQ TI+AAE+VL +I
Sbjct: 420 KSDTEKFGKFFRGMLEEGVYFAPSQFEAGFTSLAHTSEDIQFTISAAERVLGRI 473
|
Brassica napus (taxid: 3708) EC: 5EC: .EC: 4EC: .EC: 3EC: .EC: 8 |
| >sp|Q42522|GSA2_ARATH Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic OS=Arabidopsis thaliana GN=GSA2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/474 (83%), Positives = 435/474 (91%), Gaps = 2/474 (0%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVA 60
MAAT+TG G+ LG SCS+K + R SSS S+R +KMSVSVEE+ K FTL+KSEEAFN A
Sbjct: 1 MAATLTGSGIALGFSCSAKFSKRASSS--SNRRCIKMSVSVEEKTKKFTLQKSEEAFNAA 58
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP+V DS KGS + DIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 59 KNLMPGGVNSPVRAFKSVGGQPVVMDSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEV 118
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG
Sbjct: 119 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 178
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+++ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND++A+E LF
Sbjct: 179 KQKFIKFEGCYHGHANSFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIAAVEKLF 238
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
E NKGEIAAIILEPVVGNSGFI PKP+F+ IRRITK+NGALLIFDEVMTGFRLAYGGAQ
Sbjct: 239 EANKGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLIFDEVMTGFRLAYGGAQ 298
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 299 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 358
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRL +PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVY+F DAK
Sbjct: 359 LKRLSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSDAK 418
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
KS+T KF +F+RGMLEEGVY APSQFEAGFTSLAH+S+DIQ TI AAEKVL ++
Sbjct: 419 KSDTEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSRL 472
|
Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|P42799|GSA1_ARATH Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic OS=Arabidopsis thaliana GN=GSA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/474 (82%), Positives = 434/474 (91%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVA 60
M+AT+TG G LG SCSSK++ R SSS S+RC +KMSVSV+E++K+F+L+KSEEAFN A
Sbjct: 1 MSATLTGSGTALGFSCSSKISKRVSSSPASNRCCIKMSVSVDEKKKSFSLQKSEEAFNAA 60
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 61 KNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEV 120
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT
Sbjct: 121 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTN 180
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+E+ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+E LF
Sbjct: 181 KEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDLEAVEKLF 240
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
+KGEI+A+ILEPVVGNSGFI P P+F+N +R++TK+NG LLIFDEVMTGFRLAYGGAQ
Sbjct: 241 AAHKGEISAVILEPVVGNSGFIPPTPEFINGLRQLTKDNGVLLIFDEVMTGFRLAYGGAQ 300
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 301 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRLK+ GTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF D+K
Sbjct: 361 LKRLKQAGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFADSK 420
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
KS+T KF RF+RGMLEEGVYFAPSQFEAGFTSLAH+ +DIQ TI AAE+VL +I
Sbjct: 421 KSDTEKFGRFFRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQLTIAAAERVLSRI 474
|
Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|P31593|GSA_TOBAC Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Nicotiana tabacum GN=GSA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/473 (82%), Positives = 425/473 (89%), Gaps = 9/473 (1%)
Query: 11 GLGLSCSSKLTN----RFSSSAGSSRCS-----VKMSVSVEEQRKNFTLKKSEEAFNVAK 61
G+G+S SKLT + S RC+ +KM+ SV+E++K FTL+KSEEAF+ AK
Sbjct: 6 GVGISWPSKLTQGQRPKLVFSPSPRRCTPSSSTIKMTASVDEKKKTFTLQKSEEAFSKAK 65
Query: 62 ELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVL 121
ELMPGGVNSPVRAFKSVGGQPI+ DSVKGS M DIDGNEYIDYVGSWGPAIIGHADD+VL
Sbjct: 66 ELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADDEVL 125
Query: 122 AALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR 181
AAL ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR
Sbjct: 126 AALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR 185
Query: 182 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 241
+IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG PK AT +TLTAP+ND+SA+E+LFE
Sbjct: 186 PKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGGPKAATSDTLTAPYNDISAVESLFE 245
Query: 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQE 301
+KGE+AAIILEPVVGN+GFI P DFL AIR+ITKEN ALLIFDEVMTGFRLAYGGAQE
Sbjct: 246 EHKGEVAAIILEPVVGNAGFIQPNLDFLAAIRKITKENDALLIFDEVMTGFRLAYGGAQE 305
Query: 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 361
YFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL
Sbjct: 306 YFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 365
Query: 362 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 421
KRL+ PGTYEYL+KITGELTQGI+DAGKK GHA+CGGYI GMFGF F EGPV NF DAKK
Sbjct: 366 KRLQGPGTYEYLDKITGELTQGILDAGKKTGHAMCGGYIRGMFGFLFAEGPVNNFSDAKK 425
Query: 422 SETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
S+T KF RFYRGMLEEGVYFAPSQFEAGFTSLAH+S+DIQ T+ AAEKVL+QI
Sbjct: 426 SDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTSEDIQKTVAAAEKVLKQI 478
|
Nicotiana tabacum (taxid: 4097) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|Q40147|GSA_SOLLC Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/476 (81%), Positives = 426/476 (89%), Gaps = 12/476 (2%)
Query: 11 GLGLSCSSKLT------------NRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFN 58
G+GLS SKLT +R + + SS +++M+ SV+E++K FTL+KSEEAF+
Sbjct: 6 GVGLSWPSKLTKNQTPKWGFSPSHRRCNPSSSSSATIRMTASVDEKKKTFTLEKSEEAFS 65
Query: 59 VAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADD 118
AKELMPGGVNSPVRAFKSVGGQPI+ DSVKGS M DIDGNEYIDYVGSWGPAIIGHADD
Sbjct: 66 KAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADD 125
Query: 119 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178
+VLAAL ETMKKGTSFGAPCLLEN LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF
Sbjct: 126 EVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 185
Query: 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238
T R +IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+SA+E+
Sbjct: 186 TCRPKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATIDTLTAPYNDISAVES 245
Query: 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 298
LFE +KGEIAA+ILEPVVGN+GFI PK +FL AIR+ITKEN ALLIFDEVMTGFRLAYGG
Sbjct: 246 LFEEHKGEIAAVILEPVVGNAGFIPPKLEFLAAIRKITKENDALLIFDEVMTGFRLAYGG 305
Query: 299 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 358
AQEYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI
Sbjct: 306 AQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 365
Query: 359 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED 418
HTLKRL+ GTYE+L+KIT ELTQGI+DAGKK GHA+CGG I GMFGFFF +GP+YNF D
Sbjct: 366 HTLKRLQGQGTYEHLDKITAELTQGILDAGKKTGHAMCGGSIRGMFGFFFADGPIYNFSD 425
Query: 419 AKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
AKKS+T KF RFYRGMLEEGVYFAPSQFEAGFTSLAH+ +DIQ T+ AAEKVL+QI
Sbjct: 426 AKKSDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQRTVAAAEKVLKQI 481
|
Solanum lycopersicum (taxid: 4081) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|P45621|GSA_SOYBN Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Glycine max GN=GSA1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/458 (82%), Positives = 413/458 (90%), Gaps = 1/458 (0%)
Query: 18 SKLTNRFSSSAGSSRCSVKMSVSVEEQRKN-FTLKKSEEAFNVAKELMPGGVNSPVRAFK 76
++LT S S+ + +V M+VS++ + N TL KSEEAF AKELMPGGVNSPVRAFK
Sbjct: 9 ARLTLGMSLSSSTRSRTVAMAVSIDPKTDNKLTLTKSEEAFAAAKELMPGGVNSPVRAFK 68
Query: 77 SVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA 136
SVGGQPIV DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA
Sbjct: 69 SVGGQPIVIDSVKGSRMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA 128
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196
PCLLEN LAE+VI AVPSIEMVRFVNSGTEACMG LRLARA+TGRE+IIKFEGCYHGHAD
Sbjct: 129 PCLLENTLAELVIDAVPSIEMVRFVNSGTEACMGALRLARAYTGREKIIKFEGCYHGHAD 188
Query: 197 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256
PFLVKAGSGVATLGLPDSPGVPK AT+ETLTAP+ND A+E LFE NKGEIAA+ LEPVV
Sbjct: 189 PFLVKAGSGVATLGLPDSPGVPKAATFETLTAPYNDTEAIEKLFEANKGEIAAVFLEPVV 248
Query: 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKII 316
GN+GFI PKPDF + +R+ITKEN LL+FDEVMTGFRL+YGGAQEYFG+TPD+TTLGKII
Sbjct: 249 GNAGFIVPKPDFHSFLRKITKENNTLLVFDEVMTGFRLSYGGAQEYFGITPDITTLGKII 308
Query: 317 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 376
GGGLPVGAYGGRRDIME VAPAGPMYQAGTLSGNPLAMTAGI TL+R+KEPGTYEYL+KI
Sbjct: 309 GGGLPVGAYGGRRDIMEKVAPAGPMYQAGTLSGNPLAMTAGIETLQRIKEPGTYEYLDKI 368
Query: 377 TGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 436
TGEL +GII+AGK+AGHAICGG+I GMFGFFFTEGPVYNF DAKKS+T KFARF+ GML
Sbjct: 369 TGELVEGIIEAGKRAGHAICGGHIRGMFGFFFTEGPVYNFADAKKSDTAKFARFFWGMLA 428
Query: 437 EGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
EGVY APSQFEAGFTSLAH+SDDI+ TI AAEKV R+I
Sbjct: 429 EGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI 466
|
Glycine max (taxid: 3847) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|Q6YZE2|GSA_ORYSJ Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Oryza sativa subsp. japonica GN=GSA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/449 (81%), Positives = 408/449 (90%)
Query: 26 SSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVF 85
S A + R V+ ++SVE+ K +T++KSEE FN AKELMPGGVNSPVRAFKSVGGQPIVF
Sbjct: 30 SRARAPRSVVRAAISVEKGEKAYTVEKSEEIFNAAKELMPGGVNSPVRAFKSVGGQPIVF 89
Query: 86 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLA 145
DSVKGS MWD+DGNEYIDYVGSWGPAIIGHADD V AAL ET+KKGTSFGAPC+LENVLA
Sbjct: 90 DSVKGSRMWDVDGNEYIDYVGSWGPAIIGHADDTVNAALIETLKKGTSFGAPCVLENVLA 149
Query: 146 EMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG 205
EMVISAVPSIEMVRFVNSGTEACMG LRL RAFTGRE+I+KFEGCYHGHAD FLVKAGSG
Sbjct: 150 EMVISAVPSIEMVRFVNSGTEACMGALRLVRAFTGREKILKFEGCYHGHADSFLVKAGSG 209
Query: 206 VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265
VATLGLPDSPGVPKGAT ETLTAP+NDV A++ LFE NKG+IAA+ LEPVVGN+GFI P+
Sbjct: 210 VATLGLPDSPGVPKGATSETLTAPYNDVEAVKKLFEENKGQIAAVFLEPVVGNAGFIPPQ 269
Query: 266 PDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAY 325
P FLNA+R +TK++GALL+FDEVMTGFRLAYGGAQEYFG+TPD++TLGKIIGGGLPVGAY
Sbjct: 270 PGFLNALRDLTKQDGALLVFDEVMTGFRLAYGGAQEYFGITPDVSTLGKIIGGGLPVGAY 329
Query: 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGII 385
GGR+DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL EPGTY+YL+KITG+L +G++
Sbjct: 330 GGRKDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLMEPGTYDYLDKITGDLVRGVL 389
Query: 386 DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ 445
DAG K GH +CGG+I GMFGFFFT GPV+NF DAKKS+T KF RFYRGMLEEGVY APSQ
Sbjct: 390 DAGAKTGHEMCGGHIRGMFGFFFTAGPVHNFGDAKKSDTAKFGRFYRGMLEEGVYLAPSQ 449
Query: 446 FEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
FEAGFTSLAH+S DI+ T+ AA KVLR+I
Sbjct: 450 FEAGFTSLAHTSQDIEKTVEAAAKVLRRI 478
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|P18492|GSA_HORVU Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Hordeum vulgare GN=GSA PE=1 SV=3 | Back alignment and function description |
|---|
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/449 (81%), Positives = 406/449 (90%), Gaps = 2/449 (0%)
Query: 26 SSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVF 85
S A SR V+ +VS++E K +T++KSEE FN AKELMPGGVNSPVRAFKSVGGQPIVF
Sbjct: 23 SRAPRSRSVVRAAVSIDE--KAYTVQKSEEIFNAAKELMPGGVNSPVRAFKSVGGQPIVF 80
Query: 86 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLA 145
DSVKGSHMWD+DGNEYIDYVGSWGPAIIGHADD+V AAL ET+KKGTSFGAPC LENVLA
Sbjct: 81 DSVKGSHMWDVDGNEYIDYVGSWGPAIIGHADDKVNAALIETLKKGTSFGAPCALENVLA 140
Query: 146 EMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG 205
+MVISAVPSIEMVRFVNSGTEACMG LRL RAFTGRE+I+KFEGCYHGHAD FLVKAGSG
Sbjct: 141 QMVISAVPSIEMVRFVNSGTEACMGALRLVRAFTGREKILKFEGCYHGHADSFLVKAGSG 200
Query: 206 VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265
VATLGLPDSPGVPKGAT TLTAP+ND A++ LFE+NKGEIAA+ LEPVVGN+GFI P+
Sbjct: 201 VATLGLPDSPGVPKGATVGTLTAPYNDADAVKKLFEDNKGEIAAVFLEPVVGNAGFIPPQ 260
Query: 266 PDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAY 325
P FLNA+R +TK++GALL+FDEVMTGFRLAYGGAQEYFG+TPD+TTLGKIIGGGLPVGAY
Sbjct: 261 PAFLNALREVTKQDGALLVFDEVMTGFRLAYGGAQEYFGITPDVTTLGKIIGGGLPVGAY 320
Query: 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGII 385
GGR+DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL EPGTYEYL+K+TGEL +GI+
Sbjct: 321 GGRKDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLMEPGTYEYLDKVTGELVRGIL 380
Query: 386 DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ 445
D G K GH +CGG+I GMFGFFF GPV+NF+DAKKS+T KF RF+RGML EGVY APSQ
Sbjct: 381 DVGAKTGHEMCGGHIRGMFGFFFAGGPVHNFDDAKKSDTAKFGRFHRGMLGEGVYLAPSQ 440
Query: 446 FEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
FEAGFTSLAH++ DI+ T+ AAEKVLR I
Sbjct: 441 FEAGFTSLAHTTQDIEKTVEAAEKVLRWI 469
|
Hordeum vulgare (taxid: 4513) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|B2J7M9|GSA_NOSP7 Glutamate-1-semialdehyde 2,1-aminomutase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=hemL PE=3 SV=1 | Back alignment and function description |
|---|
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/430 (73%), Positives = 363/430 (84%), Gaps = 2/430 (0%)
Query: 47 NFTLK--KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDY 104
N T+K KS+E F A+ LMPGGV+SPVRAFKSVGGQPIVFD VKG+++WD+DGN+YIDY
Sbjct: 3 NTTIKTTKSQEVFAAAQNLMPGGVSSPVRAFKSVGGQPIVFDRVKGAYIWDVDGNQYIDY 62
Query: 105 VGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSG 164
VG+WGPAI GHA +V+AAL E ++KGTSFGAP LENVLAEMVI AVPSIEMVRFVNSG
Sbjct: 63 VGTWGPAICGHAHPEVIAALHEALEKGTSFGAPSTLENVLAEMVIDAVPSIEMVRFVNSG 122
Query: 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYE 224
TEACMGVLRL RAFT R++IIKFEGCYHGHAD FLVKAGSGVATLGLPDSPGVPK AT
Sbjct: 123 TEACMGVLRLMRAFTNRDKIIKFEGCYHGHADTFLVKAGSGVATLGLPDSPGVPKAATST 182
Query: 225 TLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLI 284
TLTAP+ND+ +++ LFE N+ EIA +ILEPVVGN+GFIAP FL +R +T E GALL+
Sbjct: 183 TLTAPYNDLESVKALFEENRDEIAGVILEPVVGNAGFIAPDAGFLEGLRELTHEYGALLV 242
Query: 285 FDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQA 344
FDEVMTGFR+AYGGAQE FGVTPDLTTLGK+IGGGLPVGAYGGRRDIM MVAPAGP+YQA
Sbjct: 243 FDEVMTGFRIAYGGAQEKFGVTPDLTTLGKVIGGGLPVGAYGGRRDIMSMVAPAGPVYQA 302
Query: 345 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 404
GTLSGNPLAMTAGI TL+ L++PGTY+YL +IT +L G++ K+ GH CGG IS MF
Sbjct: 303 GTLSGNPLAMTAGIKTLELLQKPGTYDYLERITKKLADGLLQIAKETGHTACGGQISAMF 362
Query: 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTI 464
G FFT GPV+N+EDAKKS+T KF RF+RGMLE GVY APSQFEAGFTS AH+ +DI T+
Sbjct: 363 GLFFTSGPVHNYEDAKKSDTAKFGRFHRGMLERGVYLAPSQFEAGFTSFAHTEEDIDQTL 422
Query: 465 TAAEKVLRQI 474
A V+ +
Sbjct: 423 AIARDVMSSL 432
|
Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
| >sp|B1X023|GSA_CYAA5 Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanothece sp. (strain ATCC 51142) GN=hemL PE=3 SV=2 | Back alignment and function description |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/423 (73%), Positives = 364/423 (86%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
KSE+ F A++LMPGGV+SPVRAFKSVGGQPIVFD VKG+++WD+DGN+YIDYVG+WGPA
Sbjct: 11 KSEDIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDHVKGAYIWDVDGNQYIDYVGTWGPA 70
Query: 112 IIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171
I GHA +V+AAL + + +GTSFGAPCLLENVLAEMVI AVPSIEMVRFVNSGTEACM V
Sbjct: 71 ICGHAHPEVIAALHDALDRGTSFGAPCLLENVLAEMVIDAVPSIEMVRFVNSGTEACMSV 130
Query: 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231
LRL RAFTGR++IIKF+GCYHGHAD FLV+AGSGVATLGLPDSPGVPK T TLTAP+N
Sbjct: 131 LRLMRAFTGRDKIIKFQGCYHGHADMFLVQAGSGVATLGLPDSPGVPKTTTANTLTAPYN 190
Query: 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
D+ A++ LF N EIA +ILEPVVGNSGF+ P FL +R +T E GALL+FDEVMTG
Sbjct: 191 DLEAVKALFAENPDEIAGVILEPVVGNSGFVVPDGGFLQGLRELTNEYGALLVFDEVMTG 250
Query: 292 FRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
FRL+YGGAQE FGVTPDLTTLGK+IGGGLPVGAYGGR+DIM MVAPAGPMYQAGTLSGNP
Sbjct: 251 FRLSYGGAQEKFGVTPDLTTLGKVIGGGLPVGAYGGRKDIMSMVAPAGPMYQAGTLSGNP 310
Query: 352 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411
LAMTAGI TL+ L++PGTY L +IT +L++G++ K+AGH +CGGYI MFG FFTEG
Sbjct: 311 LAMTAGIKTLELLQKPGTYNQLEQITQQLSEGLLKIAKEAGHQVCGGYIGAMFGLFFTEG 370
Query: 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVL 471
PV N++DAKKS+ KF RF+RGMLE+GVY APSQFEAGFTSLAH+S+DI+ T+ AA+ VL
Sbjct: 371 PVRNYDDAKKSDLAKFGRFHRGMLEKGVYLAPSQFEAGFTSLAHTSEDIEKTLAAAKDVL 430
Query: 472 RQI 474
+
Sbjct: 431 SNL 433
|
Cyanothece sp. (strain ATCC 51142) (taxid: 43989) EC: 5 EC: . EC: 4 EC: . EC: 3 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 474 | ||||||
| 224134068 | 479 | predicted protein [Populus trichocarpa] | 1.0 | 0.989 | 0.862 | 0.0 | |
| 255571784 | 473 | glutamate-1-semialdehyde 2,1-aminomutase | 0.959 | 0.961 | 0.880 | 0.0 | |
| 449438260 | 471 | PREDICTED: glutamate-1-semialdehyde 2,1- | 0.991 | 0.997 | 0.856 | 0.0 | |
| 307136451 | 471 | glutamate-1-semialdehyde 21-aminomutase | 0.991 | 0.997 | 0.850 | 0.0 | |
| 75149864 | 473 | RecName: Full=Glutamate-1-semialdehyde 2 | 0.997 | 1.0 | 0.833 | 0.0 | |
| 15229018 | 472 | glutamate-1-semialdehyde 2,1-aminomutase | 0.995 | 1.0 | 0.839 | 0.0 | |
| 28972463 | 473 | glutamate 1-semialdehyde aminotransferas | 0.997 | 1.0 | 0.827 | 0.0 | |
| 15242822 | 474 | glutamate-1-semialdehyde-2,1-aminomutase | 1.0 | 1.0 | 0.822 | 0.0 | |
| 225456404 | 473 | PREDICTED: glutamate-1-semialdehyde 2,1- | 0.928 | 0.930 | 0.881 | 0.0 | |
| 498914 | 472 | glutamate-1-semialdehyde aminotransferas | 0.995 | 1.0 | 0.835 | 0.0 |
| >gi|224134068|ref|XP_002321728.1| predicted protein [Populus trichocarpa] gi|222868724|gb|EEF05855.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/479 (86%), Positives = 448/479 (93%), Gaps = 5/479 (1%)
Query: 1 MAATITGVGVGLGLSCSS--KLTN-RFSSSAGSSRCSVKMSVSVEEQRK--NFTLKKSEE 55
MA+TITGV VGLGLSCS+ KLT R SS+ S CS+KM+VSVEE++K +FTL+KSEE
Sbjct: 1 MASTITGVSVGLGLSCSTTRKLTQKRNPSSSRLSFCSIKMAVSVEEEKKKKSFTLEKSEE 60
Query: 56 AFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH 115
AF+ AKE+MPGGVNSPVRAFKSVGGQPIVFDSVKGSHM DIDGN+YIDYVGSWGPAIIGH
Sbjct: 61 AFSAAKEMMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMRDIDGNDYIDYVGSWGPAIIGH 120
Query: 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 175
ADD+VLAAL ETMKKGTSFGAPCLLENVLAEMVI AVPSIEMVRFVNSGTEACMGVLRLA
Sbjct: 121 ADDEVLAALSETMKKGTSFGAPCLLENVLAEMVIKAVPSIEMVRFVNSGTEACMGVLRLA 180
Query: 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 235
RA+TGRE+IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK ATYETLTAP+ND++A
Sbjct: 181 RAYTGREKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATYETLTAPYNDIAA 240
Query: 236 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295
+ENLFENNKGEI IILEPVVGN+GFI PKP+F+NAIRRIT+EN ALLIFDEVMTGFRL+
Sbjct: 241 VENLFENNKGEICGIILEPVVGNAGFIPPKPEFINAIRRITEENNALLIFDEVMTGFRLS 300
Query: 296 YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 355
YGGAQEYFG+TPDLTTLGKIIGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMT
Sbjct: 301 YGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMT 360
Query: 356 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 415
AGIHTLKRL++PG+YEYL+KIT EL QGIIDAGKK GHAICGGYI GMFGFFFTEGPVYN
Sbjct: 361 AGIHTLKRLQKPGSYEYLDKITSELVQGIIDAGKKTGHAICGGYIRGMFGFFFTEGPVYN 420
Query: 416 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
F DAKKS+T KFARFY+GML EGVYFAPSQFEAGFTSLAH+++DIQ TI AAE VLRQI
Sbjct: 421 FADAKKSDTAKFARFYQGMLREGVYFAPSQFEAGFTSLAHTAEDIQKTIAAAENVLRQI 479
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571784|ref|XP_002526835.1| glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis] gi|223533839|gb|EEF35570.1| glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/461 (88%), Positives = 435/461 (94%), Gaps = 6/461 (1%)
Query: 15 SCSSKLTNRFSSSAGSSRCS-VKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVR 73
SC++ S +SRCS +KM+VSVEE++KNFTLKKSEEAFNVAKELMPGGVNSPVR
Sbjct: 18 SCTN-----LSQRRPTSRCSSIKMAVSVEEEKKNFTLKKSEEAFNVAKELMPGGVNSPVR 72
Query: 74 AFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS 133
AFKSVGGQPIV DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAAL ETMKKGTS
Sbjct: 73 AFKSVGGQPIVMDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALAETMKKGTS 132
Query: 134 FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193
FGAPCLLENVLAEMVI AVP IEMVRFVNSGTEACMGVLRLARAFTG+E++IKFEGCYHG
Sbjct: 133 FGAPCLLENVLAEMVIKAVPCIEMVRFVNSGTEACMGVLRLARAFTGQEKLIKFEGCYHG 192
Query: 194 HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253
HADPFLVKAGSGVATLGLPDSPGVPK AT+ETLTAPFND++A+E LFE NKGEIAAIILE
Sbjct: 193 HADPFLVKAGSGVATLGLPDSPGVPKAATFETLTAPFNDIAAVEKLFEANKGEIAAIILE 252
Query: 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG 313
PVVGNSGFI PKPDFLNAIRRITKEN ALLIFDEVMTGFRL+YGGAQEYFG+TPDL+TLG
Sbjct: 253 PVVGNSGFIPPKPDFLNAIRRITKENNALLIFDEVMTGFRLSYGGAQEYFGITPDLSTLG 312
Query: 314 KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 373
KIIGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL+EPG+YEYL
Sbjct: 313 KIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQEPGSYEYL 372
Query: 374 NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433
+KITGEL QGI+DAGKKAGHA+CGG+ISGMFGFFFTEGPVYNF DAKKS+T KFARFY+G
Sbjct: 373 DKITGELIQGILDAGKKAGHAMCGGHISGMFGFFFTEGPVYNFSDAKKSDTAKFARFYQG 432
Query: 434 MLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
MLEEGVYFAPSQFEAGFTSLAH+++DIQ TI AAEKV RQI
Sbjct: 433 MLEEGVYFAPSQFEAGFTSLAHTTEDIQRTIKAAEKVFRQI 473
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438260|ref|XP_004136907.1| PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like [Cucumis sativus] gi|449527822|ref|XP_004170908.1| PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 843 bits (2178), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/475 (85%), Positives = 448/475 (94%), Gaps = 5/475 (1%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCS-VKMSVSVEEQRKNFTLKKSEEAFNV 59
MA + G VG+GL CS+KL++ ++++ S R S VKM+V+++E++K FTLKKSEEAFN
Sbjct: 1 MAGSFAG-SVGIGLPCSTKLSH--TTTSRSFRFSRVKMAVTLDEKKK-FTLKKSEEAFNA 56
Query: 60 AKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQ 119
AKELMPGGVNSPVRAFKSVGGQPI+ DSVKGSHMWDIDGNEY+DYVGSWGPAIIGHADD+
Sbjct: 57 AKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSHMWDIDGNEYVDYVGSWGPAIIGHADDE 116
Query: 120 VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 179
VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT
Sbjct: 117 VLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 176
Query: 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239
G+E++IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK ATYETLTAPFND+SA+E++
Sbjct: 177 GKEKLIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATYETLTAPFNDISAVESI 236
Query: 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA 299
F NKGEIAAIILEPVVGNSGFIAPKPDFLNAIR++TKEN ALLIFDEVMTGFRL+YGGA
Sbjct: 237 FNANKGEIAAIILEPVVGNSGFIAPKPDFLNAIRKLTKENDALLIFDEVMTGFRLSYGGA 296
Query: 300 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 359
QEYFG+TPDLTTLGKIIGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGIH
Sbjct: 297 QEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 356
Query: 360 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 419
TLKRLKEPGTYEYL+KIT EL +G++ AGKKAGHAICGGYI+GMFGFFFT+GPVYNFEDA
Sbjct: 357 TLKRLKEPGTYEYLDKITSELVEGLVAAGKKAGHAICGGYINGMFGFFFTDGPVYNFEDA 416
Query: 420 KKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
KKS+T KF RFYRGMLE+GVYFAPSQFEAGFTSLAH+S+DIQHTI AAEKV +QI
Sbjct: 417 KKSDTAKFGRFYRGMLEQGVYFAPSQFEAGFTSLAHTSEDIQHTIAAAEKVFKQI 471
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136451|gb|ADN34256.1| glutamate-1-semialdehyde 21-aminomutase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/475 (85%), Positives = 445/475 (93%), Gaps = 5/475 (1%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCS-VKMSVSVEEQRKNFTLKKSEEAFNV 59
MA + G VG+GL CS+KL++ ++++ SSRC VKM+V+++E +KNFTLKKSEEAFN
Sbjct: 1 MAGSFAG-SVGIGLPCSTKLSH--TTTSRSSRCHRVKMAVTLDE-KKNFTLKKSEEAFNA 56
Query: 60 AKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQ 119
AKELMPGGVNSPVRAFKSVGGQPI+ DSVKGSHMWDIDGNEY+DYVGSWGPAIIGHADD+
Sbjct: 57 AKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSHMWDIDGNEYVDYVGSWGPAIIGHADDE 116
Query: 120 VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 179
VLAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT
Sbjct: 117 VLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 176
Query: 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239
G+E++IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK AT ETLTAPFND+SA+E++
Sbjct: 177 GKEKLIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATSETLTAPFNDLSAVESI 236
Query: 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA 299
F NKGEIAAIILEPVVGNSGFI PKPDFLNAIR++TKEN ALLIFDEVMTGFRL+YGGA
Sbjct: 237 FNANKGEIAAIILEPVVGNSGFIPPKPDFLNAIRKLTKENDALLIFDEVMTGFRLSYGGA 296
Query: 300 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 359
QEYFG+TPDLTTLGKIIGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGIH
Sbjct: 297 QEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 356
Query: 360 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 419
TLKRLKEPGTYEYL+KIT EL +G++ AGKKAGHAI GGYI+GMFGFFFT+GPV+NFEDA
Sbjct: 357 TLKRLKEPGTYEYLDKITSELVEGLVAAGKKAGHAISGGYINGMFGFFFTDGPVHNFEDA 416
Query: 420 KKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
KKS+T KF RFYR MLE+GVYFAPSQFEAGFTSLAH+S+DIQHTI AAEKV +QI
Sbjct: 417 KKSDTAKFGRFYRAMLEQGVYFAPSQFEAGFTSLAHTSEDIQHTIAAAEKVFKQI 471
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75149864|sp|Q85WB7.1|GSA_BRANA RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic; Short=GSA; AltName: Full=Glutamate-1-semialdehyde aminotransferase; Short=GSA-AT; Flags: Precursor gi|28972461|gb|AAO63782.1|AF364595_1 glutamate 1-semialdehyde aminotransferase enzyme [Brassica napus] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/474 (83%), Positives = 439/474 (92%), Gaps = 1/474 (0%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVA 60
M+AT+TG G LG SCSSK++ R SSS S+RCS+KMSVSV+E++K+FTL+KSEEAFN A
Sbjct: 1 MSATLTGSGTALGFSCSSKISKRVSSSP-STRCSIKMSVSVDEKKKSFTLQKSEEAFNAA 59
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 60 KNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEV 119
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT
Sbjct: 120 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTN 179
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+E+ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+ LF
Sbjct: 180 KEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIEAVAKLF 239
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
E +KGEI+A+ILEPVVGNSGFI P P+F+N +R++TK+NGALLIFDEVMTGFRLAYGGAQ
Sbjct: 240 EAHKGEISAVILEPVVGNSGFITPTPEFINGLRQLTKDNGALLIFDEVMTGFRLAYGGAQ 299
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 300 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 359
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRLK+PGTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF DAK
Sbjct: 360 LKRLKQPGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFADAK 419
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
KS+T KF +F+RGMLEEGVYFAPSQFEAGFTSLAH+S+DIQ TI+AAE+VL +I
Sbjct: 420 KSDTEKFGKFFRGMLEEGVYFAPSQFEAGFTSLAHTSEDIQFTISAAERVLGRI 473
|
Source: Brassica napus Species: Brassica napus Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15229018|ref|NP_190442.1| glutamate-1-semialdehyde 2,1-aminomutase 2 [Arabidopsis thaliana] gi|14195661|sp|Q42522.2|GSA2_ARATH RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic; Short=GSA 2; AltName: Full=Glutamate-1-semialdehyde aminotransferase 2; Short=GSA-AT 2; Flags: Precursor gi|6523104|emb|CAB62362.1| glutamate-1-semialdehyde aminotransferase [Arabidopsis thaliana] gi|95147290|gb|ABF57280.1| At3g48730 [Arabidopsis thaliana] gi|110738531|dbj|BAF01191.1| glutamate-1-semialdehyde aminotransferase [Arabidopsis thaliana] gi|332644929|gb|AEE78450.1| glutamate-1-semialdehyde 2,1-aminomutase 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/474 (83%), Positives = 435/474 (91%), Gaps = 2/474 (0%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVA 60
MAAT+TG G+ LG SCS+K + R SSS S+R +KMSVSVEE+ K FTL+KSEEAFN A
Sbjct: 1 MAATLTGSGIALGFSCSAKFSKRASSS--SNRRCIKMSVSVEEKTKKFTLQKSEEAFNAA 58
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP+V DS KGS + DIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 59 KNLMPGGVNSPVRAFKSVGGQPVVMDSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEV 118
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG
Sbjct: 119 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 178
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+++ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND++A+E LF
Sbjct: 179 KQKFIKFEGCYHGHANSFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIAAVEKLF 238
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
E NKGEIAAIILEPVVGNSGFI PKP+F+ IRRITK+NGALLIFDEVMTGFRLAYGGAQ
Sbjct: 239 EANKGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLIFDEVMTGFRLAYGGAQ 298
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 299 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 358
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRL +PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVY+F DAK
Sbjct: 359 LKRLSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSDAK 418
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
KS+T KF +F+RGMLEEGVY APSQFEAGFTSLAH+S+DIQ TI AAEKVL ++
Sbjct: 419 KSDTEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSRL 472
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|28972463|gb|AAO63783.1|AF366293_1 glutamate 1-semialdehyde aminotransferase [Brassica napus] | Back alignment and taxonomy information |
|---|
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/474 (82%), Positives = 439/474 (92%), Gaps = 1/474 (0%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVA 60
M+AT+TG G LG SCSSK+ R S S+ S+RCS+KMSVSV+E++K+FTL+KSEEAFN A
Sbjct: 1 MSATLTGSGTALGFSCSSKIPKRVSPSS-SNRCSIKMSVSVDEKKKSFTLQKSEEAFNAA 59
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K+LMPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 60 KDLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEV 119
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT
Sbjct: 120 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTN 179
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+E+ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+ LF
Sbjct: 180 KEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIEAVAKLF 239
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
E +KGEI+A+ILEPVVGNSGFI P +F+N +R+++++NGALLIFDEVMTGFRLAYGGAQ
Sbjct: 240 EAHKGEISAVILEPVVGNSGFITPTLEFINGLRQLSRDNGALLIFDEVMTGFRLAYGGAQ 299
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 300 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 359
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRLK+PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVYNF DAK
Sbjct: 360 LKRLKQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYNFADAK 419
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
KS+T KF RF+RGMLEEGVYFAPSQFEAGFTSLAH+++D+Q TI AAE+VL +I
Sbjct: 420 KSDTEKFGRFFRGMLEEGVYFAPSQFEAGFTSLAHTTEDVQFTIAAAERVLGRI 473
|
Source: Brassica napus Species: Brassica napus Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15242822|ref|NP_201162.1| glutamate-1-semialdehyde-2,1-aminomutase [Arabidopsis thaliana] gi|1170028|sp|P42799.1|GSA1_ARATH RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic; Short=GSA 1; AltName: Full=Glutamate-1-semialdehyde aminotransferase 1; Short=GSA-AT 1; Flags: Precursor gi|454357|gb|AAA19117.1| glutamate-1-semialdehyde-2,1-aminomutase [Arabidopsis thaliana] gi|10177038|dbj|BAB10450.1| glutamate-1-semialdehyde 2,1-aminomutase 1 precursor (GSA 1) (glutamate-1-semialdehyde aminotransferase 1) (GSA-AT 1) [Arabidopsis thaliana] gi|20856673|gb|AAM26679.1| AT5g63570/MBK5_3 [Arabidopsis thaliana] gi|22655038|gb|AAM98110.1| At5g63570/MBK5_3 [Arabidopsis thaliana] gi|332010387|gb|AED97770.1| glutamate-1-semialdehyde-2,1-aminomutase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/474 (82%), Positives = 434/474 (91%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVA 60
M+AT+TG G LG SCSSK++ R SSS S+RC +KMSVSV+E++K+F+L+KSEEAFN A
Sbjct: 1 MSATLTGSGTALGFSCSSKISKRVSSSPASNRCCIKMSVSVDEKKKSFSLQKSEEAFNAA 60
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 61 KNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEV 120
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT
Sbjct: 121 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTN 180
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+E+ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+E LF
Sbjct: 181 KEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDLEAVEKLF 240
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
+KGEI+A+ILEPVVGNSGFI P P+F+N +R++TK+NG LLIFDEVMTGFRLAYGGAQ
Sbjct: 241 AAHKGEISAVILEPVVGNSGFIPPTPEFINGLRQLTKDNGVLLIFDEVMTGFRLAYGGAQ 300
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 301 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRLK+ GTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF D+K
Sbjct: 361 LKRLKQAGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFADSK 420
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
KS+T KF RF+RGMLEEGVYFAPSQFEAGFTSLAH+ +DIQ TI AAE+VL +I
Sbjct: 421 KSDTEKFGRFFRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQLTIAAAERVLSRI 474
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456404|ref|XP_002284200.1| PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic [Vitis vinifera] gi|147861754|emb|CAN83169.1| hypothetical protein VITISV_021914 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/440 (88%), Positives = 424/440 (96%)
Query: 35 VKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMW 94
VKM+VSV+E++K+FTL+KSEEAF +AKELMPGGVNSPVRAFKSVGGQPI+FDSVKGSHMW
Sbjct: 34 VKMAVSVDEKKKSFTLRKSEEAFEIAKELMPGGVNSPVRAFKSVGGQPILFDSVKGSHMW 93
Query: 95 DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS 154
DIDGNEYIDYVGSWGPAIIGHADD+VLAAL ETMKKGTSFGAPCLLEN+LAEMVISAVPS
Sbjct: 94 DIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENILAEMVISAVPS 153
Query: 155 IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 214
IEMVRFVNSGTEACMG+LRLARAFTG+E+IIKFEGCYHGHADPFLVKAGSGVATLGLPDS
Sbjct: 154 IEMVRFVNSGTEACMGMLRLARAFTGKEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 213
Query: 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274
PGVP+ AT+ETLT+PFND+S +E LFE NKGEIAA+ILEPVVGNSGFIAPKPDFLNA++
Sbjct: 214 PGVPRAATFETLTSPFNDLSTVEKLFEANKGEIAAVILEPVVGNSGFIAPKPDFLNALQE 273
Query: 275 ITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEM 334
ITKENGALL+FDEVMTGFR++YGGAQEYFG+TPD+TTLGKIIGGGLPVGAYGGRR+IME+
Sbjct: 274 ITKENGALLVFDEVMTGFRISYGGAQEYFGITPDITTLGKIIGGGLPVGAYGGRREIMEL 333
Query: 335 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA 394
VAPAGPMYQAGTLSGNPLAMTAGI TLKRLKEPG+YEYL+KITGEL QGI+DAGKKAGHA
Sbjct: 334 VAPAGPMYQAGTLSGNPLAMTAGIQTLKRLKEPGSYEYLDKITGELIQGILDAGKKAGHA 393
Query: 395 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA 454
ICGGYISGMFGFFFTEGPVYNF DAK S+T KFARF+RGMLEEGVYFAPSQFEAGFTSLA
Sbjct: 394 ICGGYISGMFGFFFTEGPVYNFGDAKNSDTAKFARFFRGMLEEGVYFAPSQFEAGFTSLA 453
Query: 455 HSSDDIQHTITAAEKVLRQI 474
H+ +DIQ TI AAEKV R+I
Sbjct: 454 HTPEDIQQTIAAAEKVFRKI 473
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|498914|gb|AAA79123.1| glutamate-1-semialdehyde aminotransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/474 (83%), Positives = 432/474 (91%), Gaps = 2/474 (0%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVA 60
MAAT+TG G+ LG S S+K + R SSS S+R +KMSVSVEE+ K FTL+KSEEAFN A
Sbjct: 1 MAATLTGSGIALGFSSSAKFSKRASSS--SNRRCIKMSVSVEEKTKKFTLQKSEEAFNAA 58
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP+V DS KGS + DIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 59 KNLMPGGVNSPVRAFKSVGGQPVVMDSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEV 118
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG
Sbjct: 119 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 178
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+++ IKFEGCYHGHA FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND++A+E LF
Sbjct: 179 KQKFIKFEGCYHGHAKSFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIAAVEKLF 238
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
E NKGEIAAIILEPVVGNSGFI PKP+F+ IRRITK+NGALLI DEVMTGFRLAYGGAQ
Sbjct: 239 EANKGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLILDEVMTGFRLAYGGAQ 298
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 299 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 358
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRL +PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVY+F DAK
Sbjct: 359 LKRLSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSDAK 418
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
KS+T KF +F+RGMLEEGVY APSQFEAGFTSLAH+S+DIQ TI AAEKVL ++
Sbjct: 419 KSDTEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSRL 472
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 474 | ||||||
| TAIR|locus:2114520 | 472 | GSA2 "glutamate-1-semialdehyde | 0.995 | 1.0 | 0.795 | 1.6e-203 | |
| TAIR|locus:2160554 | 474 | GSA1 ""glutamate-1-semialdehyd | 1.0 | 1.0 | 0.776 | 2.2e-201 | |
| TIGR_CMR|CHY_1212 | 432 | CHY_1212 "glutamate-1-semialde | 0.892 | 0.979 | 0.565 | 1.3e-125 | |
| TIGR_CMR|GSU_0337 | 427 | GSU_0337 "glutamate-1-semialde | 0.877 | 0.974 | 0.552 | 2e-120 | |
| TIGR_CMR|BA_4693 | 429 | BA_4693 "glutamate-1-semialdeh | 0.886 | 0.979 | 0.555 | 6.7e-120 | |
| UNIPROTKB|P23893 | 426 | hemL "glutamate-1-semialdehyde | 0.896 | 0.997 | 0.514 | 7.7e-119 | |
| TIGR_CMR|SO_1300 | 430 | SO_1300 "glutamate-1-semialdeh | 0.896 | 0.988 | 0.514 | 2.4e-115 | |
| UNIPROTKB|Q9KU97 | 432 | hemL "Glutamate-1-semialdehyde | 0.886 | 0.972 | 0.515 | 7.6e-112 | |
| TIGR_CMR|VC_0626 | 432 | VC_0626 "glutamate-1-semialdeh | 0.886 | 0.972 | 0.515 | 7.6e-112 | |
| TIGR_CMR|CPS_4629 | 427 | CPS_4629 "glutamate-1-semialde | 0.896 | 0.995 | 0.477 | 7.8e-110 |
| TAIR|locus:2114520 GSA2 "glutamate-1-semialdehyde 2,1-aminomutase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1969 (698.2 bits), Expect = 1.6e-203, P = 1.6e-203
Identities = 377/474 (79%), Positives = 412/474 (86%)
Query: 1 MAATITXXXXXXXXSCSSKLTNRFXXXXXXXXXXVKMSVSVEEQRKNFTLKKSEEAFNVA 60
MAAT+T SCS+K + R +KMSVSVEE+ K FTL+KSEEAFN A
Sbjct: 1 MAATLTGSGIALGFSCSAKFSKR--ASSSSNRRCIKMSVSVEEKTKKFTLQKSEEAFNAA 58
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP+V DS KGS + DIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 59 KNLMPGGVNSPVRAFKSVGGQPVVMDSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEV 118
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG
Sbjct: 119 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 178
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+++ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND++A+E LF
Sbjct: 179 KQKFIKFEGCYHGHANSFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIAAVEKLF 238
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
E NKGEIAAIILEPVVGNSGFI PKP+F+ IRRITK+NGALLIFDEVMTGFRLAYGGAQ
Sbjct: 239 EANKGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLIFDEVMTGFRLAYGGAQ 298
Query: 301 EYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPD PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 299 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 358
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRL +PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVY+F DAK
Sbjct: 359 LKRLSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSDAK 418
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
KS+T KF +F+RGMLEEGVY APSQFEAGFTSLAH+S+DIQ TI AAEKVL ++
Sbjct: 419 KSDTEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSRL 472
|
|
| TAIR|locus:2160554 GSA1 ""glutamate-1-semialdehyde-2,1-aminomutase"" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1949 (691.1 bits), Expect = 2.2e-201, P = 2.2e-201
Identities = 368/474 (77%), Positives = 411/474 (86%)
Query: 1 MAATITXXXXXXXXSCSSKLTNRFXXXXXXXXXXVKMSVSVEEQRKNFTLKKSEEAFNVA 60
M+AT+T SCSSK++ R +KMSVSV+E++K+F+L+KSEEAFN A
Sbjct: 1 MSATLTGSGTALGFSCSSKISKRVSSSPASNRCCIKMSVSVDEKKKSFSLQKSEEAFNAA 60
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K LMPGGVNSPVRAFKSVGGQP++ DSVKGS MWDIDGNEYIDYVGSWGPAIIGHADD+V
Sbjct: 61 KNLMPGGVNSPVRAFKSVGGQPVLIDSVKGSKMWDIDGNEYIDYVGSWGPAIIGHADDEV 120
Query: 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180
LAAL ETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT
Sbjct: 121 LAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTN 180
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240
+E+ IKFEGCYHGHA+ FLVKAGSGVATLGLPDSPGVPK AT +TLTAP+ND+ A+E LF
Sbjct: 181 KEKFIKFEGCYHGHANAFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDLEAVEKLF 240
Query: 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300
+KGEI+A+ILEPVVGNSGFI P P+F+N +R++TK+NG LLIFDEVMTGFRLAYGGAQ
Sbjct: 241 AAHKGEISAVILEPVVGNSGFIPPTPEFINGLRQLTKDNGVLLIFDEVMTGFRLAYGGAQ 300
Query: 301 EYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
EYFG+TPD PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT
Sbjct: 301 EYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420
LKRLK+ GTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF D+K
Sbjct: 361 LKRLKQAGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFADSK 420
Query: 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
KS+T KF RF+RGMLEEGVYFAPSQFEAGFTSLAH+ +DIQ TI AAE+VL +I
Sbjct: 421 KSDTEKFGRFFRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQLTIAAAERVLSRI 474
|
|
| TIGR_CMR|CHY_1212 CHY_1212 "glutamate-1-semialdehyde-2,1-aminomutase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 1234 (439.4 bits), Expect = 1.3e-125, P = 1.3e-125
Identities = 239/423 (56%), Positives = 300/423 (70%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG 109
+ +S EAF+ AK+++PGGVNSPVRAFKSVG P+ + +GS ++DIDGN YIDYVGSWG
Sbjct: 5 IDRSIEAFSEAKKVIPGGVNSPVRAFKSVGLNPVFIERGEGSKIYDIDGNCYIDYVGSWG 64
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169
P I+GH +V AL +KKGTSFGAP LLE +AE++++A P+++MVR VNSGTEA M
Sbjct: 65 PLILGHRHPKVEEALANCLKKGTSFGAPTLLETEMAEIIVNAFPAMDMVRMVNSGTEATM 124
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
+RLAR FTGR +I+KFEGCYHGHAD L+KAGSG TLG+P SPGVP T+TA
Sbjct: 125 SAIRLARGFTGRNKIVKFEGCYHGHADSLLIKAGSGALTLGVPTSPGVPANIANNTITAQ 184
Query: 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
FND++ LE +F +IAA+ILEPV GN G + PKP FL +R +T++ GALLI DEVM
Sbjct: 185 FNDLALLEEIFAQEGNDIAAVILEPVAGNMGVVPPKPGFLEGVRELTRKYGALLIMDEVM 244
Query: 290 TGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
TGFR+ +GGAQ + V PD PVGAYGGRR+IMEMVAPAGP+YQAGTLSG
Sbjct: 245 TGFRVHWGGAQVLYNVEPDITTLGKIIGGGLPVGAYGGRREIMEMVAPAGPVYQAGTLSG 304
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
NPLAMTAGI TL LKE G YE L + + L G+ +A + AG + + M FFT
Sbjct: 305 NPLAMTAGIATLTVLKEEGVYEQLEEKSSYLESGLKEAARAAGLKLWFNRVGSMLCTFFT 364
Query: 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 469
V +++ A S+T KFA F++ +LE G+Y APSQFEA F SLAHS DD+ TI A+ K
Sbjct: 365 SEEVVDYKTACTSDTQKFAVFFKTLLENGIYIAPSQFEAMFVSLAHSKDDLDKTIEASYK 424
Query: 470 VLR 472
+
Sbjct: 425 AFK 427
|
|
| TIGR_CMR|GSU_0337 GSU_0337 "glutamate-1-semialdehyde-2,1-aminomutase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
Identities = 230/416 (55%), Positives = 286/416 (68%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
+S++ F A+E +PGGVNSPVRAFKSVG P+ G + D D N YIDYVGSWGP
Sbjct: 5 RSKDLFTQAQEFIPGGVNSPVRAFKSVGADPLFIKKAFGCTITDADNNSYIDYVGSWGPM 64
Query: 112 IIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171
I+GH QV+ A+ ++ G+SFGAP LE LA MVI AVPSIEMVR V+SGTEA M
Sbjct: 65 ILGHCHPQVVEAVKRAVESGSSFGAPTELEITLARMVIDAVPSIEMVRMVSSGTEATMSA 124
Query: 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231
+RLAR +TGR++IIKF GCYHGHAD LVKAGSG AT G+PDSPGVP TLTA FN
Sbjct: 125 IRLARGYTGRDKIIKFSGCYHGHADALLVKAGSGAATFGVPDSPGVPVDVAKNTLTAQFN 184
Query: 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
D+ ++ L + NK EIA II+EP+ GN G + P FL +R I G +LIFDEVMTG
Sbjct: 185 DLDSVSKLIDENKNEIACIIVEPIAGNMGTVPPGEGFLEGLRSICDSEGIVLIFDEVMTG 244
Query: 292 FRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
FR+AYGGAQE +GVTPD PVGA+GG++DIM++++P+G +YQAGTLSGNP
Sbjct: 245 FRVAYGGAQELYGVTPDMTTLGKIIGGGLPVGAFGGKKDIMKLLSPSGGVYQAGTLSGNP 304
Query: 352 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411
LAMTAGI TLK L+ G YE L + + L +GI +A K AG+ I + MF FFT
Sbjct: 305 LAMTAGIETLKLLQADGFYEQLEQTSRRLAEGITEAAKSAGYPIYPTRVGSMFCTFFTSN 364
Query: 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 467
V ++ A +T FA F+R MLE+G+Y APSQFE F S+AH+ +I+ TI AA
Sbjct: 365 EVKDWPTATTCDTKAFAAFFRMMLEKGIYLAPSQFETAFVSIAHTEVEIEKTIVAA 420
|
|
| TIGR_CMR|BA_4693 BA_4693 "glutamate-1-semialdehyde-2,1-aminomutase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
Identities = 236/425 (55%), Positives = 293/425 (68%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
KS AF A++LMPGGVNSPVRAFKSVG P+ + KGS ++DIDGNEYIDYV SWGP
Sbjct: 6 KSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPL 65
Query: 112 IIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171
I GHA+D+V+ AL ++GTSFGAP +EN LA++VI VPSIE+VR VNSGTEA M
Sbjct: 66 IHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSA 125
Query: 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231
LRLAR +TGR +I+KF GCYHGH D L+KAGSGVATLGLPDSPGVP+G T+T +N
Sbjct: 126 LRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN 185
Query: 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
D+ +++ FE +IA +I+EPV GN G + P+P FL +R +T++NGALLIFDEVMTG
Sbjct: 186 DLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTG 245
Query: 292 FRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
FR+AY Q Y+GVTPD PVGAYGG+ +IM VAP+GP+YQAGTLSGNP
Sbjct: 246 FRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNP 305
Query: 352 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG--HAICGGYISGMFGFFFT 409
LAM AG TL +L P +Y + L G+ A +K G H I M G FFT
Sbjct: 306 LAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHI--NRAGSMIGIFFT 362
Query: 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 469
+ PV N++ AK S FA +YR M+E+GV+ PSQFE F S HS DI+ TI AAE
Sbjct: 363 DEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAEI 422
Query: 470 VLRQI 474
+ ++
Sbjct: 423 AMSKL 427
|
|
| UNIPROTKB|P23893 hemL "glutamate-1-semialdehyde aminotransferase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 219/426 (51%), Positives = 295/426 (69%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG 109
+ KSE ++ A+EL+PGGVNSPVRAF VGG P+ + G++++D+DG YIDYVGSWG
Sbjct: 1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWG 60
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169
P ++GH + A+ E ++G SFGAP +E +A++V VP+++MVR VNSGTEA M
Sbjct: 61 PMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATM 120
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
+RLAR FTGR++IIKFEGCYHGHAD LVKAGSG TLG P+SPGVP TLT
Sbjct: 121 SAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKYTLTCT 180
Query: 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
+ND++++ FE EIA II+EPV GN + P P+FL +R + E GALLI DEVM
Sbjct: 181 YNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPLPEFLPGLRALCDEFGALLIIDEVM 240
Query: 290 TGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
TGFR+A GAQ+Y+GV PD PVGA+GGRRD+M+ +AP GP+YQAGTLSG
Sbjct: 241 TGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSG 300
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
NP+AM AG L + +PG +E L+++T L +G+++A ++AG + ++ GMFG FFT
Sbjct: 301 NPIAMAAGFACLNEVAQPGVHETLDELTTRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFT 360
Query: 410 EGP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
+ V ++D + +F RF+ ML+EGVY APS FEAGF S+AHS +DI +TI AA
Sbjct: 361 DAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAFEAGFMSVAHSMEDINNTIDAAR 420
Query: 469 KVLRQI 474
+V ++
Sbjct: 421 RVFAKL 426
|
|
| TIGR_CMR|SO_1300 SO_1300 "glutamate-1-semialdehyde-2,1-aminomutase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
Identities = 219/426 (51%), Positives = 286/426 (67%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG 109
+ +SE F AK+ +PGGVNSPVRAF VGG P+ + G++++D DG YIDYVGSWG
Sbjct: 1 MTRSEALFEQAKKTIPGGVNSPVRAFNGVGGSPLFIEKADGAYIYDADGKAYIDYVGSWG 60
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169
P I+GH ++ A+ + G SFGAP LE +AE VI+ VPSIE VR V+SGTEA M
Sbjct: 61 PMILGHNHPKIREAVLAAVHNGLSFGAPTELEVQMAEKVIAMVPSIEQVRMVSSGTEATM 120
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
+RLAR FT R++I+KFEGCYHGHAD LVKAGSG TLG P SPG+P+ TLTA
Sbjct: 121 SAIRLARGFTNRDKILKFEGCYHGHADCLLVKAGSGALTLGQPSSPGIPEDFAKHTLTAV 180
Query: 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
+ND+ ++ +LFE EI+ II+EPV GN I P P FL +R + E GALLI DEVM
Sbjct: 181 YNDLDSVRSLFEQYPTEISCIIIEPVAGNMNCIPPIPGFLEGLRSLCDEFGALLIIDEVM 240
Query: 290 TGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
TGFR++ GAQ ++GVTPD PVGA+GGR+D+M+ +AP GP+YQAGTLSG
Sbjct: 241 TGFRVSKSGAQGHYGVTPDLTTLGKVIGGGMPVGAFGGRKDVMQFIAPTGPVYQAGTLSG 300
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
NP+AM+AG+ ++ L E G YE L+ T + +G A K G + Y+ GMFGFFFT
Sbjct: 301 NPIAMSAGLAQMEALCEEGLYEALSAKTKRIAEGFKAAADKHGIPMAINYVGGMFGFFFT 360
Query: 410 EGP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
E + F+ K F FY GML+EGVY APS +EAGF S+AH ++++ T+ AA+
Sbjct: 361 EQEHITRFDQVTKCNIEHFRTFYHGMLDEGVYLAPSAYEAGFLSMAHGEEELRLTLEAAD 420
Query: 469 KVLRQI 474
+VL ++
Sbjct: 421 RVLARM 426
|
|
| UNIPROTKB|Q9KU97 hemL "Glutamate-1-semialdehyde 2,1-aminomutase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 217/421 (51%), Positives = 274/421 (65%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG 109
+ KS E + A+ +PGGVNSPVRAF VGG PI D G+ ++D DG YIDYVGSWG
Sbjct: 1 MTKSAELYQKAQTTIPGGVNSPVRAFNGVGGSPIFIDRADGALIFDADGKAYIDYVGSWG 60
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169
P I+GH + A+ + ++G SFGAP +E +AE+V VPS+E +R VNSGTEA M
Sbjct: 61 PMILGHNHAVIREAVIQAAQRGLSFGAPTEMEITMAELVSELVPSMEQLRMVNSGTEATM 120
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
+RLAR +TGR++IIKFEGCYHGHAD LVKAGSG TLG P SPGVP TLTA
Sbjct: 121 SAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGALTLGQPSSPGVPADFAKHTLTAR 180
Query: 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
FND+ ++ LF N+GEIA II+EPV GN I P F +R I + GALLIFDEVM
Sbjct: 181 FNDLDSVRELFAANQGEIACIIVEPVAGNMNCIPPVEGFHEGLREICDQEGALLIFDEVM 240
Query: 290 TGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
TGFR+A GGAQ ++ + PD PVGA+GGRR++M+ +AP GP+YQAGTLSG
Sbjct: 241 TGFRVALGGAQAHYNIKPDLTTLGKVIGGGMPVGAFGGRREVMQYIAPTGPVYQAGTLSG 300
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
NP+AM AG L L+E G + L T +L G + G + + GMFGFFFT
Sbjct: 301 NPIAMAAGYACLNLLREEGNEKRLAAKTKQLADGFKSLADQHGIPLLVHQVGGMFGFFFT 360
Query: 410 EGPVYN-FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
E +ED + + +F RF+ ML+ GVY APS FEA FTSLAH S +I+ T+ AA+
Sbjct: 361 EQETVTCYEDVARCDVERFKRFFHLMLQHGVYLAPSAFEASFTSLAHGSKEIEATLEAAD 420
Query: 469 K 469
+
Sbjct: 421 R 421
|
|
| TIGR_CMR|VC_0626 VC_0626 "glutamate-1-semialdehyde 2,1-aminomutase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 217/421 (51%), Positives = 274/421 (65%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG 109
+ KS E + A+ +PGGVNSPVRAF VGG PI D G+ ++D DG YIDYVGSWG
Sbjct: 1 MTKSAELYQKAQTTIPGGVNSPVRAFNGVGGSPIFIDRADGALIFDADGKAYIDYVGSWG 60
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169
P I+GH + A+ + ++G SFGAP +E +AE+V VPS+E +R VNSGTEA M
Sbjct: 61 PMILGHNHAVIREAVIQAAQRGLSFGAPTEMEITMAELVSELVPSMEQLRMVNSGTEATM 120
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
+RLAR +TGR++IIKFEGCYHGHAD LVKAGSG TLG P SPGVP TLTA
Sbjct: 121 SAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGALTLGQPSSPGVPADFAKHTLTAR 180
Query: 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
FND+ ++ LF N+GEIA II+EPV GN I P F +R I + GALLIFDEVM
Sbjct: 181 FNDLDSVRELFAANQGEIACIIVEPVAGNMNCIPPVEGFHEGLREICDQEGALLIFDEVM 240
Query: 290 TGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
TGFR+A GGAQ ++ + PD PVGA+GGRR++M+ +AP GP+YQAGTLSG
Sbjct: 241 TGFRVALGGAQAHYNIKPDLTTLGKVIGGGMPVGAFGGRREVMQYIAPTGPVYQAGTLSG 300
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
NP+AM AG L L+E G + L T +L G + G + + GMFGFFFT
Sbjct: 301 NPIAMAAGYACLNLLREEGNEKRLAAKTKQLADGFKSLADQHGIPLLVHQVGGMFGFFFT 360
Query: 410 EGPVYN-FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
E +ED + + +F RF+ ML+ GVY APS FEA FTSLAH S +I+ T+ AA+
Sbjct: 361 EQETVTCYEDVARCDVERFKRFFHLMLQHGVYLAPSAFEASFTSLAHGSKEIEATLEAAD 420
Query: 469 K 469
+
Sbjct: 421 R 421
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| TIGR_CMR|CPS_4629 CPS_4629 "glutamate-1-semialdehyde-2,1-aminomutase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
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Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
Identities = 204/427 (47%), Positives = 282/427 (66%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG 109
+ KSE+ F A++++PGGVNSPVRAF VGG P +G++++D D YIDYVGSWG
Sbjct: 1 MNKSEQLFEQAQKIIPGGVNSPVRAFNGVGGTPCFIKRAQGAYIYDADDKAYIDYVGSWG 60
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169
P I+GH +L A+ T K G SFGAP +E +AE V VPS+E +R V+SGTEA M
Sbjct: 61 PMILGHNHPAILEAVITTAKNGLSFGAPTEIEITMAEKVRELVPSMESLRMVSSGTEATM 120
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
+RLAR +TGR++I+KFEGCYHGHAD LVKAGSG TLG+P+SPG+P+ TLT
Sbjct: 121 SAIRLARGYTGRDKILKFEGCYHGHADALLVKAGSGALTLGVPNSPGIPEDFAKHTLTVS 180
Query: 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
+N++ ++ +F EIA II+EPV GN I P FL +R + + ++LIFDEVM
Sbjct: 181 YNNIDEVKEIFAKYADEIACIIVEPVAGNMNCIPPVEGFLEGLRDVCDQYSSVLIFDEVM 240
Query: 290 TGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
TGFR+A GGAQ ++ + PD PVGA+GG+++IM+ +AP GP+YQAGTLSG
Sbjct: 241 TGFRVALGGAQAHYNIKPDLTTLGKVIGGGMPVGAFGGKQEIMDYIAPVGPVYQAGTLSG 300
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
NP+AM AG+ +L L + ++ L+ T +L G+ A ++ G ++ Y+ MFGFFFT
Sbjct: 301 NPIAMAAGLASLTELAQGNKHQQLSSATEKLAMGLKAAAERNGVSLSVNYVGAMFGFFFT 360
Query: 410 E--GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 467
E P+ +E A + + F RF+ ML+EGVY APS +E GF S +H+ D I+ T+ AA
Sbjct: 361 EDKNPITTYEQATQCDGEMFKRFFHLMLDEGVYLAPSSYETGFLSTSHTDDIIEKTLVAA 420
Query: 468 EKVLRQI 474
+K Q+
Sbjct: 421 DKCFAQL 427
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| B7KA18 | GSA_CYAP7 | 5, ., 4, ., 3, ., 8 | 0.7172 | 0.9029 | 0.9884 | yes | no |
| B8HYK1 | GSA_CYAP4 | 5, ., 4, ., 3, ., 8 | 0.7266 | 0.9029 | 0.9907 | yes | no |
| Q2JMP7 | GSA_SYNJB | 5, ., 4, ., 3, ., 8 | 0.6985 | 0.9029 | 0.9816 | yes | no |
| A2C0U2 | GSA_PROM1 | 5, ., 4, ., 3, ., 8 | 0.7028 | 0.8945 | 0.9906 | yes | no |
| A2BVE5 | GSA_PROM5 | 5, ., 4, ., 3, ., 8 | 0.6744 | 0.9008 | 0.9861 | yes | no |
| Q55665 | GSA_SYNY3 | 5, ., 4, ., 3, ., 8 | 0.7146 | 0.8945 | 0.9792 | N/A | no |
| A5GUJ2 | GSA_SYNR3 | 5, ., 4, ., 3, ., 8 | 0.6926 | 0.8924 | 0.9746 | yes | no |
| A7NKV1 | GSA_ROSCS | 5, ., 4, ., 3, ., 8 | 0.5910 | 0.8924 | 0.9746 | yes | no |
| P18492 | GSA_HORVU | 5, ., 4, ., 3, ., 8 | 0.8106 | 0.9430 | 0.9530 | N/A | no |
| P45621 | GSA_SOYBN | 5, ., 4, ., 3, ., 8 | 0.8231 | 0.9641 | 0.9806 | yes | no |
| A3PBK8 | GSA_PROM0 | 5, ., 4, ., 3, ., 8 | 0.6822 | 0.8987 | 0.9838 | yes | no |
| A5UU40 | GSA_ROSS1 | 5, ., 4, ., 3, ., 8 | 0.5910 | 0.8924 | 0.9906 | yes | no |
| A5GMT2 | GSA_SYNPW | 5, ., 4, ., 3, ., 8 | 0.6926 | 0.8924 | 0.9769 | yes | no |
| A2C7I7 | GSA_PROM3 | 5, ., 4, ., 3, ., 8 | 0.6939 | 0.8755 | 0.9696 | yes | no |
| Q46GT9 | GSA_PROMT | 5, ., 4, ., 3, ., 8 | 0.7028 | 0.8945 | 0.9814 | yes | no |
| Q7VDA1 | GSA_PROMA | 5, ., 4, ., 3, ., 8 | 0.6838 | 0.9008 | 0.9861 | yes | no |
| Q7V677 | GSA_PROMM | 5, ., 4, ., 3, ., 8 | 0.6939 | 0.8755 | 0.9696 | yes | no |
| Q39566 | GSA_CHLRE | 5, ., 4, ., 3, ., 8 | 0.6869 | 0.9029 | 0.9244 | N/A | no |
| A9BEA5 | GSA_PROM4 | 5, ., 4, ., 3, ., 8 | 0.6861 | 0.9008 | 0.9884 | yes | no |
| Q3AWP4 | GSA_SYNS9 | 5, ., 4, ., 3, ., 8 | 0.7084 | 0.8755 | 0.9696 | yes | no |
| Q7U598 | GSA_SYNPX | 5, ., 4, ., 3, ., 8 | 0.6926 | 0.8924 | 0.9883 | yes | no |
| B1XIT5 | GSA_SYNP2 | 5, ., 4, ., 3, ., 8 | 0.7399 | 0.8924 | 0.9791 | yes | no |
| Q0I8G1 | GSA_SYNS3 | 5, ., 4, ., 3, ., 8 | 0.7071 | 0.8860 | 0.9589 | yes | no |
| Q40147 | GSA_SOLLC | 5, ., 4, ., 3, ., 8 | 0.8130 | 0.9789 | 0.9646 | N/A | no |
| P31593 | GSA_TOBAC | 5, ., 4, ., 3, ., 8 | 0.8287 | 0.9789 | 0.9707 | N/A | no |
| B1X023 | GSA_CYAA5 | 5, ., 4, ., 3, ., 8 | 0.7352 | 0.8924 | 0.9769 | yes | no |
| B7K2I1 | GSA_CYAP8 | 5, ., 4, ., 3, ., 8 | 0.7266 | 0.9029 | 0.9884 | yes | no |
| A9B550 | GSA_HERA2 | 5, ., 4, ., 3, ., 8 | 0.6042 | 0.8902 | 0.9836 | yes | no |
| Q3M3B9 | GSA_ANAVT | 5, ., 4, ., 3, ., 8 | 0.7279 | 0.9029 | 0.9907 | yes | no |
| Q3ACS9 | GSA_CARHZ | 5, ., 4, ., 3, ., 8 | 0.5882 | 0.8966 | 0.9837 | yes | no |
| C0ZAH4 | GSA2_BREBN | 5, ., 4, ., 3, ., 8 | 0.5721 | 0.8924 | 0.9860 | yes | no |
| B2J7M9 | GSA_NOSP7 | 5, ., 4, ., 3, ., 8 | 0.7325 | 0.9029 | 0.9907 | yes | no |
| A2BPW6 | GSA_PROMS | 5, ., 4, ., 3, ., 8 | 0.6775 | 0.8987 | 0.9838 | yes | no |
| B0CC57 | GSA_ACAM1 | 5, ., 4, ., 3, ., 8 | 0.7257 | 0.8924 | 0.9791 | yes | no |
| P24630 | GSA_SYNP6 | 5, ., 4, ., 3, ., 8 | 0.7259 | 0.9008 | 0.9861 | yes | no |
| Q110Z9 | GSA_TRIEI | 5, ., 4, ., 3, ., 8 | 0.7234 | 0.8924 | 0.9791 | yes | no |
| Q6YZE2 | GSA_ORYSJ | 5, ., 4, ., 3, ., 8 | 0.8129 | 0.9472 | 0.9393 | yes | no |
| A8G3J9 | GSA_PROM2 | 5, ., 4, ., 3, ., 8 | 0.6886 | 0.8945 | 0.9792 | yes | no |
| Q3ALU9 | GSA_SYNSC | 5, ., 4, ., 3, ., 8 | 0.7101 | 0.8734 | 0.9672 | yes | no |
| Q8DLK8 | GSA_THEEB | 5, ., 4, ., 3, ., 8 | 0.7304 | 0.8924 | 0.9679 | yes | no |
| Q7V2J3 | GSA_PROMP | 5, ., 4, ., 3, ., 8 | 0.6895 | 0.8902 | 0.9745 | yes | no |
| Q31C50 | GSA_PROM9 | 5, ., 4, ., 3, ., 8 | 0.6855 | 0.8924 | 0.9746 | yes | no |
| Q31QJ2 | GSA_SYNE7 | 5, ., 4, ., 3, ., 8 | 0.7283 | 0.9008 | 0.9861 | yes | no |
| Q42522 | GSA2_ARATH | 5, ., 4, ., 3, ., 8 | 0.8396 | 0.9957 | 1.0 | yes | no |
| P42799 | GSA1_ARATH | 5, ., 4, ., 3, ., 8 | 0.8227 | 1.0 | 1.0 | no | no |
| Q7NPI4 | GSA_GLOVI | 5, ., 4, ., 3, ., 8 | 0.6415 | 0.8945 | 0.9814 | yes | no |
| Q85WB7 | GSA_BRANA | 5, ., 4, ., 3, ., 8 | 0.8333 | 0.9978 | 1.0 | N/A | no |
| Q8YS26 | GSA_NOSS1 | 5, ., 4, ., 3, ., 8 | 0.7279 | 0.9029 | 0.9907 | yes | no |
| Q2JS70 | GSA_SYNJA | 5, ., 4, ., 3, ., 8 | 0.6993 | 0.9050 | 0.9839 | yes | no |
| B0JPW6 | GSA_MICAN | 5, ., 4, ., 3, ., 8 | 0.7196 | 0.9029 | 0.9884 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| eugene3.00150799 | glutamate-1-semialdehyde 2,1-aminomutase (EC-5.4.3.8) (479 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| gw1.I.4290.1 | glutamyl-tRNA reductase (EC-1.2.1.70) (471 aa) | • | • | • | • | • | 0.995 | ||||
| estExt_Genewise1_v1.C_LG_II0707 | glutamyl-tRNA reductase (EC-1.2.1.70) (469 aa) | • | • | • | • | • | 0.995 | ||||
| eugene3.00020758 | hypothetical protein (430 aa) | • | • | • | • | • | 0.995 | ||||
| gw1.IX.2784.1 | glutamyl-tRNA reductase (EC-1.2.1.70) (503 aa) | • | • | • | • | • | 0.994 | ||||
| fgenesh4_pm.C_LG_VII000271 | hydroxymethylbilane synthase (EC-2.5.1.61) (363 aa) | • | • | • | • | 0.970 | |||||
| fgenesh4_pg.C_LG_V000312 | hydroxymethylbilane synthase (EC-2.5.1.61) (364 aa) | • | • | • | • | 0.970 | |||||
| gw1.13426.3.1 | Delta-aminolevulinic acid dehydratase (293 aa) | • | • | • | 0.969 | ||||||
| gw1.16698.2.1 | Delta-aminolevulinic acid dehydratase (254 aa) | • | • | • | 0.962 | ||||||
| gw1.148.3.1 | uroporphyrin-III C-methyltransferase (EC-2.1.1.107) (328 aa) | • | • | 0.954 | |||||||
| gw1.182.88.1 | uroporphyrinogen decarboxylase (EC-4.1.1.37) (357 aa) | • | • | • | • | 0.930 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 474 | |||
| PLN02482 | 474 | PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a | 0.0 | |
| PRK00062 | 426 | PRK00062, PRK00062, glutamate-1-semialdehyde amino | 0.0 | |
| COG0001 | 432 | COG0001, HemL, Glutamate-1-semialdehyde aminotrans | 0.0 | |
| TIGR00713 | 423 | TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin | 0.0 | |
| PRK12389 | 428 | PRK12389, PRK12389, glutamate-1-semialdehyde amino | 0.0 | |
| cd00610 | 413 | cd00610, OAT_like, Acetyl ornithine aminotransfera | 1e-125 | |
| PRK00615 | 433 | PRK00615, PRK00615, glutamate-1-semialdehyde amino | 1e-109 | |
| PRK06209 | 431 | PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a | 2e-71 | |
| pfam00202 | 338 | pfam00202, Aminotran_3, Aminotransferase class-III | 6e-69 | |
| COG4992 | 404 | COG4992, ArgD, Ornithine/acetylornithine aminotran | 1e-63 | |
| COG0160 | 447 | COG0160, GabT, 4-aminobutyrate aminotransferase an | 7e-61 | |
| TIGR00707 | 379 | TIGR00707, argD, transaminase, acetylornithine/suc | 1e-52 | |
| PRK02627 | 396 | PRK02627, PRK02627, acetylornithine aminotransfera | 1e-49 | |
| PRK08117 | 433 | PRK08117, PRK08117, 4-aminobutyrate aminotransfera | 1e-48 | |
| PRK07046 | 453 | PRK07046, PRK07046, aminotransferase; Validated | 3e-48 | |
| PRK08360 | 443 | PRK08360, PRK08360, 4-aminobutyrate aminotransfera | 5e-46 | |
| PRK05769 | 441 | PRK05769, PRK05769, 4-aminobutyrate aminotransfera | 5e-46 | |
| PRK02936 | 377 | PRK02936, argD, acetylornithine aminotransferase; | 1e-45 | |
| PTZ00125 | 400 | PTZ00125, PTZ00125, ornithine aminotransferase-lik | 3e-43 | |
| PRK03244 | 398 | PRK03244, argD, acetylornithine aminotransferase; | 6e-43 | |
| PRK07495 | 425 | PRK07495, PRK07495, 4-aminobutyrate aminotransfera | 5e-41 | |
| COG0161 | 449 | COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon | 6e-41 | |
| PRK08088 | 425 | PRK08088, PRK08088, 4-aminobutyrate aminotransfera | 9e-41 | |
| PRK03715 | 395 | PRK03715, argD, acetylornithine transaminase prote | 1e-40 | |
| PRK08593 | 445 | PRK08593, PRK08593, 4-aminobutyrate aminotransfera | 2e-39 | |
| PRK06777 | 421 | PRK06777, PRK06777, 4-aminobutyrate aminotransfera | 4e-39 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 5e-39 | |
| PLN02624 | 474 | PLN02624, PLN02624, ornithine-delta-aminotransfera | 3e-37 | |
| TIGR00508 | 417 | TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon | 5e-37 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 1e-36 | |
| PRK11522 | 459 | PRK11522, PRK11522, putrescine--2-oxoglutarate ami | 2e-36 | |
| TIGR00700 | 420 | TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf | 2e-36 | |
| PRK04013 | 364 | PRK04013, argD, acetylornithine/acetyl-lysine amin | 2e-35 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 5e-35 | |
| TIGR01885 | 401 | TIGR01885, Orn_aminotrans, ornithine aminotransfer | 2e-34 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 3e-34 | |
| PRK06918 | 451 | PRK06918, PRK06918, 4-aminobutyrate aminotransfera | 5e-34 | |
| TIGR00709 | 442 | TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase | 2e-33 | |
| PRK09792 | 421 | PRK09792, PRK09792, 4-aminobutyrate transaminase; | 4e-33 | |
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 4e-32 | |
| PRK04260 | 375 | PRK04260, PRK04260, acetylornithine aminotransfera | 7e-32 | |
| TIGR03372 | 442 | TIGR03372, putres_am_tran, putrescine aminotransfe | 8e-32 | |
| PRK06062 | 451 | PRK06062, PRK06062, hypothetical protein; Provisio | 1e-31 | |
| PRK09221 | 445 | PRK09221, PRK09221, beta alanine--pyruvate transam | 8e-31 | |
| PRK06931 | 459 | PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat | 3e-30 | |
| PRK06058 | 443 | PRK06058, PRK06058, 4-aminobutyrate aminotransfera | 9e-30 | |
| PRK06938 | 464 | PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat | 3e-28 | |
| PRK04612 | 408 | PRK04612, argD, acetylornithine transaminase prote | 4e-28 | |
| PRK05964 | 423 | PRK05964, PRK05964, adenosylmethionine--8-amino-7- | 3e-27 | |
| PRK13360 | 442 | PRK13360, PRK13360, omega amino acid--pyruvate tra | 9e-26 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 1e-23 | |
| PRK04073 | 396 | PRK04073, rocD, ornithine--oxo-acid transaminase; | 1e-23 | |
| PRK06917 | 447 | PRK06917, PRK06917, hypothetical protein; Provisio | 4e-22 | |
| TIGR02407 | 412 | TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu | 1e-21 | |
| PRK05639 | 457 | PRK05639, PRK05639, 4-aminobutyrate aminotransfera | 9e-21 | |
| PLN02760 | 504 | PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans | 9e-21 | |
| PRK00854 | 401 | PRK00854, rocD, ornithine--oxo-acid transaminase; | 1e-20 | |
| PRK06148 | 1013 | PRK06148, PRK06148, hypothetical protein; Provisio | 4e-20 | |
| PRK06916 | 460 | PRK06916, PRK06916, adenosylmethionine--8-amino-7- | 4e-20 | |
| PRK06173 | 429 | PRK06173, PRK06173, adenosylmethionine--8-amino-7- | 4e-20 | |
| PRK08742 | 472 | PRK08742, PRK08742, adenosylmethionine--8-amino-7- | 1e-19 | |
| PRK07678 | 451 | PRK07678, PRK07678, aminotransferase; Validated | 4e-19 | |
| PRK07481 | 449 | PRK07481, PRK07481, hypothetical protein; Provisio | 2e-18 | |
| PRK06149 | 972 | PRK06149, PRK06149, hypothetical protein; Provisio | 2e-18 | |
| PRK07036 | 466 | PRK07036, PRK07036, hypothetical protein; Provisio | 4e-18 | |
| PRK06082 | 459 | PRK06082, PRK06082, 4-aminobutyrate aminotransfera | 6e-18 | |
| PRK12403 | 460 | PRK12403, PRK12403, putative aminotransferase; Pro | 7e-18 | |
| PRK07986 | 428 | PRK07986, PRK07986, adenosylmethionine--8-amino-7- | 1e-17 | |
| PRK07480 | 456 | PRK07480, PRK07480, putative aminotransferase; Val | 4e-17 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 9e-16 | |
| PRK07030 | 466 | PRK07030, PRK07030, adenosylmethionine--8-amino-7- | 1e-15 | |
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 2e-14 | |
| PRK09264 | 425 | PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat | 3e-14 | |
| PRK05630 | 422 | PRK05630, PRK05630, adenosylmethionine--8-amino-7- | 8e-14 | |
| PRK05965 | 459 | PRK05965, PRK05965, hypothetical protein; Provisio | 9e-14 | |
| PRK06105 | 460 | PRK06105, PRK06105, aminotransferase; Provisional | 2e-13 | |
| PRK08297 | 443 | PRK08297, PRK08297, L-lysine aminotransferase; Pro | 9e-12 | |
| PRK07482 | 461 | PRK07482, PRK07482, hypothetical protein; Provisio | 1e-11 | |
| TIGR03251 | 431 | TIGR03251, LAT_fam, L-lysine 6-transaminase | 2e-11 | |
| PLN02974 | 817 | PLN02974, PLN02974, adenosylmethionine-8-amino-7-o | 1e-09 | |
| cd06454 | 349 | cd06454, KBL_like, KBL_like; this family belongs t | 1e-06 | |
| COG0156 | 388 | COG0156, BioF, 7-keto-8-aminopelargonate synthetas | 1e-06 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 4e-06 | |
| TIGR01822 | 393 | TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate co | 4e-06 | |
| TIGR00699 | 464 | TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran | 4e-06 | |
| PRK06939 | 397 | PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzym | 9e-06 | |
| TIGR00858 | 360 | TIGR00858, bioF, 8-amino-7-oxononanoate synthase | 1e-04 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 2e-04 | |
| PRK09264 | 425 | PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat | 3e-04 |
| >gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Score = 922 bits (2385), Expect = 0.0
Identities = 386/477 (80%), Positives = 424/477 (88%), Gaps = 6/477 (1%)
Query: 1 MAATITGVGVGLGLSCSSKLTNRFSSS---AGSSRCSVKMSVSVEEQRKNFTLKKSEEAF 57
MAA + G +GL SCS+K + R SSS +KM+VSVEE+ K FT KSEE F
Sbjct: 1 MAAALAGSALGL--SCSAKPSARRSSSQRRRAVRSSVIKMAVSVEEK-KKFTTTKSEEIF 57
Query: 58 NVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHAD 117
AKELMPGGVNSPVRAFKSVGGQPIVFD VKGS+ WD+DGNEYIDYVGSWGPAIIGHAD
Sbjct: 58 KAAKELMPGGVNSPVRAFKSVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHAD 117
Query: 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA 177
D+VLAAL ETMKKGTSFGAPCLLENVLAEMVI AVPS+EMVRFVNSGTEACMGVLRLARA
Sbjct: 118 DEVLAALAETMKKGTSFGAPCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARA 177
Query: 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237
+TGRE+IIKFEGCYHGHAD FLVKAGSGVATLGLPDSPGVPK AT TLTAP+ND+ A++
Sbjct: 178 YTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVK 237
Query: 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 297
LFE NKGEIAA+ILEPVVGNSGFI PK +FL +R ITKENGALL+FDEVMTGFR+AYG
Sbjct: 238 KLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYG 297
Query: 298 GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 357
GAQEYFG+TPDLTTLGK+IGGGLPVGAYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAG
Sbjct: 298 GAQEYFGITPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAG 357
Query: 358 IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 417
IHTLKRL++PGTYEYL+KIT +L QGI++AGKKAGH +CGGYISGMFGFFFTEGPVYNF
Sbjct: 358 IHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFA 417
Query: 418 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
DAKKS+T KFARF+RGMLEEGVY APSQFEAGFTSLAH+ +DI TI AAE+VL +I
Sbjct: 418 DAKKSDTAKFARFHRGMLEEGVYLAPSQFEAGFTSLAHTEEDIDFTIAAAERVLARI 474
|
Length = 474 |
| >gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 796 bits (2058), Expect = 0.0
Identities = 277/425 (65%), Positives = 330/425 (77%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG 109
+ KSEE F AK+L+PGGVNSPVRAFKSVGG P + KG++++D+DGNEYIDYVGSWG
Sbjct: 1 MSKSEELFERAKKLIPGGVNSPVRAFKSVGGTPRFIERAKGAYLYDVDGNEYIDYVGSWG 60
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169
P I+GHA +V+ A+ E +KG SFGAP LE LAE+VI VPSIEMVR VNSGTEA M
Sbjct: 61 PMILGHAHPEVVEAVIEAAEKGLSFGAPTELEVELAELVIELVPSIEMVRMVNSGTEATM 120
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
+RLAR +TGR++IIKFEGCYHGHAD LVKAGSG ATLGLPDSPGVP+ TLTAP
Sbjct: 121 SAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP 180
Query: 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
+ND+ A+E LFE EIAA+I+EPV GN G + PKP FL +R + E+GALLIFDEVM
Sbjct: 181 YNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVM 240
Query: 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
TGFR+A GGAQ Y+GVTPDLTTLGKIIGGGLPVGA+GGRR+IME +AP GP+YQAGTLSG
Sbjct: 241 TGFRVALGGAQGYYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSG 300
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
NPLAM AG+ TLK LKEPG YE L +T L +G+ +A KKAG + + MFG FFT
Sbjct: 301 NPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFT 360
Query: 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 469
+ PV N+ DAKKS+T +FARF+ ML+EGVY APSQFEAGF S AH+ +DI+ T+ AA K
Sbjct: 361 DEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQFEAGFVSAAHTDEDIEKTLEAARK 420
Query: 470 VLRQI 474
+
Sbjct: 421 AFAAL 425
|
Length = 426 |
| >gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 649 bits (1677), Expect = 0.0
Identities = 249/424 (58%), Positives = 314/424 (74%), Gaps = 1/424 (0%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
KSE F AK+++PGGVNSPVRAFKSVGG PI + KG+++ D+DGNEYIDYV WGP
Sbjct: 6 KSEALFERAKKVIPGGVNSPVRAFKSVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWGPL 65
Query: 112 IIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171
I+GHA V+ A+ E +++G SFGAP LE LAE++I VPSIE VRFVNSGTEA M
Sbjct: 66 ILGHAHPAVVEAVQEQLERGLSFGAPTELEVELAELLIERVPSIEKVRFVNSGTEATMSA 125
Query: 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231
+RLARA+TGR++IIKFEGCYHGH+D LVKAGSG ATLG P SPGVP TL P+N
Sbjct: 126 IRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN 185
Query: 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
D+ ALE FE +IAA+I+EPV GN G + P+P FL +R +T+E+GALLIFDEV+TG
Sbjct: 186 DLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITG 245
Query: 292 FRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
FR+A GGAQ Y+GV PDLTTLGKIIGGGLP+GA+GGR +IME +AP GP+YQAGTLSGNP
Sbjct: 246 FRVALGGAQGYYGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNP 305
Query: 352 LAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410
LAM AG+ TL+ L G YE L+ + L +G+ A ++ G + + MFG FFTE
Sbjct: 306 LAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTE 365
Query: 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470
V N+ DAK+S+ +FA+F+ +L GVY APSQFEAGF S AH+ +DI T+ AA++
Sbjct: 366 EGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQFEAGFLSTAHTEEDIDRTLEAADEA 425
Query: 471 LRQI 474
+++
Sbjct: 426 FKEL 429
|
Length = 432 |
| >gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Score = 615 bits (1587), Expect = 0.0
Identities = 254/423 (60%), Positives = 317/423 (74%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
KSE F AK++ PGGVNSPVRAFKSVG P KG++++D+DGNEYIDYV SWGP
Sbjct: 1 KSENLFEEAKQVFPGGVNSPVRAFKSVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPL 60
Query: 112 IIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171
I+GHA +V+ A+ E +++GTS+GAP E +LA+ +IS VPS+EMVRFVNSGTEA M
Sbjct: 61 ILGHAHPRVVEAVKEALERGTSYGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSA 120
Query: 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231
+RLAR +TGR++IIKFEGCYHGH D LVKAGSG ATLGLP SPGVP+ TL P+N
Sbjct: 121 VRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYN 180
Query: 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
D+ ALE +FE EIA +I+EPV GN G + PKP+FL +R +T+E G+LLIFDEVMTG
Sbjct: 181 DLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTG 240
Query: 292 FRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
FR+A GGAQEYFGV PDLTTLGKIIGGGLPVGA+GGRR+IME +AP GP+YQAGTLSGNP
Sbjct: 241 FRVALGGAQEYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNP 300
Query: 352 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411
LAM AG+ TLK L E G Y L+++ L +G+ + + G + MF FFTE
Sbjct: 301 LAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEE 360
Query: 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVL 471
V N+ DAKKS+T FA+F+ ML++GV+ PSQFEA F S AH+ +DI++TI AAE+V
Sbjct: 361 EVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQFEACFLSAAHTEEDIENTIEAAEEVF 420
Query: 472 RQI 474
++
Sbjct: 421 AEL 423
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423 |
| >gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 533 bits (1376), Expect = 0.0
Identities = 215/429 (50%), Positives = 297/429 (69%), Gaps = 3/429 (0%)
Query: 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYV 105
NFT KSE A E + GGVNSP R++K+VGG P+V + KG++ +D+DGN+YIDY+
Sbjct: 2 NFT--KSEALHQEALEHIVGGVNSPSRSYKAVGGGAPVVMERGKGAYFYDVDGNKYIDYL 59
Query: 106 GSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGT 165
++GP I GHA + A+ E + G +G P LE A+M+ A+PS+E VRFVNSGT
Sbjct: 60 AAYGPIITGHAHPHITKAITEAAENGVLYGTPTELEIEFAKMLKEAIPSLEKVRFVNSGT 119
Query: 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYET 225
EA M +R+ARA+TGR +IIKF GCYHGH+D LV AGSG +TLG PDS GVPK E
Sbjct: 120 EAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEV 179
Query: 226 LTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285
+T PFND+ AL+ + E+AA+++EP+VGN G + PKP FL A+ + E GAL+I+
Sbjct: 180 ITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIY 239
Query: 286 DEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG 345
DEV+T FR YGGAQ+ GV PDLT LGKIIGGGLP+GAYGGR+DIME VAP GP YQAG
Sbjct: 240 DEVITAFRFMYGGAQDLLGVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAG 299
Query: 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 405
T++GNP +M AGI L+ L++ G YE L+++ L +GI++A +K G I + G
Sbjct: 300 TMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGITITINRLKGALT 359
Query: 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTIT 465
+FT+ V N++ A++S+ F +F++ ML +G+ APS++EA F + AH+ +DI+ T+
Sbjct: 360 VYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYEAWFLTTAHTEEDIEETLE 419
Query: 466 AAEKVLRQI 474
A ++ Q+
Sbjct: 420 AVDRAFAQL 428
|
Length = 428 |
| >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Score = 371 bits (955), Expect = e-125
Identities = 144/426 (33%), Positives = 212/426 (49%), Gaps = 25/426 (5%)
Query: 57 FNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA 116
F ++++ G +V P+V +G++++D+DGN Y+D++ G +GH
Sbjct: 2 FERDRKVLWHGY--------TVRPYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHN 53
Query: 117 DDQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVL 172
+V+ AL E + K T F LAE++++ P ++ V FVNSGTEA L
Sbjct: 54 HPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAAL 113
Query: 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG----LPDSPGVPKGATYETLTA 228
+LARA+TGR++II FEG YHG L GS G LP VP Y
Sbjct: 114 KLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAE 173
Query: 229 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288
+D+ ALE E + E+AA+I+EP+ G G I P P +L A+R + +++G LLI DEV
Sbjct: 174 LADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEV 233
Query: 289 MTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 347
TGF R A E+FGV PD+ TLGK +GGGLP+GA GR +IM+ PAGP GT
Sbjct: 234 QTGFGRTGKMFAFEHFGVEPDIVTLGKGLGGGLPLGAVLGREEIMD-AFPAGPGLHGGTF 292
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407
GNPLA A + L+ L+E G E ++ L + + + +K M G
Sbjct: 293 GGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIE 352
Query: 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS--QFEAGFTSLAHSSDDIQHTIT 465
+ K + A+ + LE G+ PS L + ++I +
Sbjct: 353 LVKDRA-----TKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLD 407
Query: 466 AAEKVL 471
A ++ L
Sbjct: 408 ALDEAL 413
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413 |
| >gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 329 bits (844), Expect = e-109
Identities = 162/420 (38%), Positives = 229/420 (54%), Gaps = 5/420 (1%)
Query: 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVG 106
++++ F+ A + PGGVNSPVRA +SVG P + S G D G +ID+ G
Sbjct: 1 MPSIQEMTHTFSEACQYFPGGVNSPVRACRSVGITPPIVSSASGDIFIDSLGKTFIDFCG 60
Query: 107 SWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGT 165
SWG I GH+ ++ A+ + ++GTS+G E + AE + S + +RFV+SGT
Sbjct: 61 SWGSLIHGHSHPKICDAIQQGAERGTSYGLTSEQEILFAEELFSYLGLEDHKIRFVSSGT 120
Query: 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYE- 224
EA M +RLAR TGR IIKF GCYHGHAD L G + L +
Sbjct: 121 EATMTAVRLARGITGRSIIIKFLGCYHGHADTLL--QGISFSETSLDTLTHLVDTDLAHP 178
Query: 225 -TLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL 283
TL+ P+ND + + + +A +I EP+ N G + PKP F+ I + + G+L
Sbjct: 179 LTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLS 238
Query: 284 IFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQ 343
I DEV+TGFR+A GGA + V PD+T GKI+GGGLP A + IM+ +AP G ++Q
Sbjct: 239 IMDEVVTGFRVAQGGAAAIYHVKPDITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQ 298
Query: 344 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403
AGTLSGNPLAM AG ++ +E G Y L+ + I + + G + M
Sbjct: 299 AGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVRYGSM 358
Query: 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHT 463
F FFF E N +A+ S+ F FY+ +GVY +PS FEA F S AHS +++ +
Sbjct: 359 FSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEASFLSSAHSMENLDYA 418
|
Length = 433 |
| >gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 2e-71
Identities = 129/426 (30%), Positives = 202/426 (47%), Gaps = 42/426 (9%)
Query: 60 AKELMPGGVNSPVRAFKSV-GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADD 118
L+PGG ++ + P G+H+WD+DGNEYI+Y +GHA
Sbjct: 8 LHALIPGGAHTYAKGDDQYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYP 67
Query: 119 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178
V+ A+ E ++ G +F P +E AE + + +MV+F +G++A +RLARA+
Sbjct: 68 PVVEAVREALQDGCNFTRPSAIELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAY 127
Query: 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238
TGR+ + + C PF + T P S G+P + T+T +ND+++LE
Sbjct: 128 TGRDLVAR---CAD---HPFFSTDDWFIGTT--PMSAGIPASVSALTVTFRYNDIASLEA 179
Query: 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 298
LFE++ G IA +ILEP + P+ FL+ +RR+ ENGAL I DE++TGFR G
Sbjct: 180 LFEDHPGRIACVILEPATADE----PQDGFLHEVRRLCHENGALFILDEMITGFRWHMRG 235
Query: 299 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG---------TLSG 349
AQ+ +G+ PDL+ GK +G G V A G+R+ ME+ G + T
Sbjct: 236 AQKLYGIVPDLSCFGKALGNGFAVSALAGKREYMEL----GGLEHTDRERVFLLSTTHGA 291
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG---HAICGGYISGMFGF 406
A+ A I T+ ++ E L++ +L G+ +A + G H G +
Sbjct: 292 ETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCL--T 349
Query: 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITA 466
+ T + + S+ + F + + GV PS S AH DI+ TI A
Sbjct: 350 YSTLDG-----NGQPSQAFR-TLFLQETIRRGV-LMPSL----VVSYAHGDADIERTIDA 398
Query: 467 AEKVLR 472
L
Sbjct: 399 VHGALG 404
|
Length = 431 |
| >gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 6e-69
Identities = 102/318 (32%), Positives = 148/318 (46%), Gaps = 34/318 (10%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLA 145
KG ++D+DG Y+D++ +GH +++ A+ E K T LA
Sbjct: 6 KGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEPALQLA 65
Query: 146 EMVISAVP-SIEMVRFVNSGTEACMGVLRLARA------FTGRERIIKFEGCYHGHADPF 198
E + P ++ V F+NSG+EA ++LAR TG+ +II F G +HG
Sbjct: 66 EKLAQLTPGGLDRVFFMNSGSEANETAIKLARQYAKKKGATGKTKIIAFSGGFHGRTLGA 125
Query: 199 L-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-----------LFENNKGE 246
L V SG P PGV P+ D+ A E + +
Sbjct: 126 LSVTGSSGYKKGFGPSLPGVYF--------LPYPDLEAAEEELACADEALRLIKAVHDDN 177
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 305
IAA+I+EP+ G G + P P FL +R I K++G LLI DEV TGF R A E++GV
Sbjct: 178 IAAVIVEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHYGV 237
Query: 306 TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 365
TPD+ TL K + GGLP+ A +IM+ P GT GNPLA A + L ++
Sbjct: 238 TPDIMTLAKALTGGLPLSAVLATAEIMQAFHPGS---HGGTFGGNPLACAAALAVLDIIE 294
Query: 366 EPGTYEYLNKITGELTQG 383
+ + + L +G
Sbjct: 295 DENLLQNAQEKGDYLRKG 312
|
Length = 338 |
| >gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 1e-63
Identities = 106/319 (33%), Positives = 150/319 (47%), Gaps = 27/319 (8%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK----GTSFGAP 137
P+V +G+++WD G EY+D+ +GH ++ AL E +K F
Sbjct: 25 PVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNE 84
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG---RERIIKFEGCYHGH 194
E LAE ++ P + V F NSG EA L+LAR +TG + +II FE +HG
Sbjct: 85 PQAE--LAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGR 142
Query: 195 ADPFLVKAGSG--VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252
+ A P PG PFND+ ALE + + AA+I+
Sbjct: 143 T-LGALSATGQPKYRKGFGPLLPGF--------RHVPFNDIEALEAAID---EDTAAVIV 190
Query: 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311
EP+ G G I P+FL A+R + E+GALLI DEV TG R A E++GV PD+ T
Sbjct: 191 EPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILT 250
Query: 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371
L K +GGG P+GA +I P T GNPLA + L+ L E G E
Sbjct: 251 LAKALGGGFPIGAMLATEEIASAFTPGD---HGSTFGGNPLACAVALAVLEVLLEEGLLE 307
Query: 372 YLNKITGELTQGIIDAGKK 390
+ + L Q + + ++
Sbjct: 308 NVREKGEYLLQRLRELKRR 326
|
Length = 404 |
| >gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 7e-61
Identities = 104/315 (33%), Positives = 154/315 (48%), Gaps = 34/315 (10%)
Query: 77 SVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---- 132
P+V +G++++D+DGNEY+D++ +GH +V+ A+ + K
Sbjct: 34 GRFRFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHT 93
Query: 133 --SFGAPCLLENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFE 188
+ P + LAE + + P V F NSG EA +++ARA+TGR +I F+
Sbjct: 94 RDLYYEPYVE---LAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFD 150
Query: 189 GCYHGH--------ADPFLVKAGSG-----VATLGLPDSPGVPKGATYETLTAPFNDVSA 235
G +HG KAG G V + P+ P G E +
Sbjct: 151 GAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDA--LEY 208
Query: 236 LENLFENNK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
+E + + E+AAII+EP+ G G I P FL A+R++ +E+G LLI DEV TGF
Sbjct: 209 IERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGF 268
Query: 293 -RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
R A E+FGV PD+ TL K +GGGLP+ A GR +IM+ GT GNP
Sbjct: 269 GRTGKMFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMDWPPGG----HGGTFGGNP 324
Query: 352 LAMTAGIHTLKRLKE 366
+A A + L ++E
Sbjct: 325 VACAAALAVLDVIEE 339
|
Length = 447 |
| >gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 1e-52
Identities = 104/332 (31%), Positives = 162/332 (48%), Gaps = 38/332 (11%)
Query: 75 FKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK---- 130
+ G P+ KG++++D++G EY+D+V +GHA +++ AL E ++K
Sbjct: 3 MNTYGRLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHV 62
Query: 131 GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG-----RERII 185
+ E LAE + + V F NSG EA L+LAR +TG +++II
Sbjct: 63 SNLYYTEPQEE--LAEK-LVEHSGADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKII 119
Query: 186 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY-ETLT-----APFNDVSALENL 239
FE +HG T+G + G PK E L AP+ND+ +L+
Sbjct: 120 AFENSFHGR-------------TMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKA 166
Query: 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 298
+ E AA+I+EP+ G G +FL A+R I K+ ALLIFDEV TG R
Sbjct: 167 ID---DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFF 223
Query: 299 AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 358
A E++G+ PD+ TL K +GGG+P+GA + ++ E P T GNPLA A +
Sbjct: 224 AYEHYGIEPDIITLAKGLGGGVPIGATLAKEEVAEAFTPGD---HGSTFGGNPLACAAAL 280
Query: 359 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390
L+ +++ E + + + + + GK
Sbjct: 281 AVLEVIEKERLLENVKEKGDYFKERLEELGKN 312
|
This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379 |
| >gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 1e-49
Identities = 94/305 (30%), Positives = 146/305 (47%), Gaps = 44/305 (14%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 136
PI F +G+ +WD DG EY+D++ +GH +++ A+ E K TS +
Sbjct: 21 LPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYI 80
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIK-----FEGCY 191
E LAE + + ++ V F NSG EA ++LAR + ++ I K E +
Sbjct: 81 EPQEE--LAEK-LVELSGMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSF 137
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETL-----TAPFNDVSALENLFENNKGE 246
HG +ATL P +G +E L PFND+ AL+ +
Sbjct: 138 HGRT----------LATLSATGQPKYQEG--FEPLVEGFIYVPFNDIEALKAAITDK--- 182
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGGAQE 301
AA++LEP+ G G ++L A+R + ENG LLI DEV TG AY +
Sbjct: 183 TAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAY----Q 238
Query: 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 361
++G+ PD+ TL K +GGG+P+GA + + ++ P T GNPLA A + +
Sbjct: 239 HYGIEPDIMTLAKGLGGGVPIGAVLAKEKVADVFTPGD---HGSTFGGNPLACAAALAVI 295
Query: 362 KRLKE 366
+ ++E
Sbjct: 296 EIIEE 300
|
Length = 396 |
| >gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 1e-48
Identities = 103/316 (32%), Positives = 146/316 (46%), Gaps = 49/316 (15%)
Query: 83 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTSFGA---P 137
+ +G + + +DG EY+D+ A +GH +V+ A+ E K G
Sbjct: 27 LPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYE 86
Query: 138 CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196
+L+ LAE + P ++ F NSG EA G L+LA+ T R II F GC+HG
Sbjct: 87 SILK--LAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRT- 143
Query: 197 PFLVKAGSGVATLGL------------PDSPGV-----------PKGATYETLTAPFNDV 233
+ L + P V PKG E +
Sbjct: 144 ---------LGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFL--ECL 192
Query: 234 SALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
LE+LF++ E+AA+I+EPV+G G+I P FL +R I +G LLIFDEV TG
Sbjct: 193 RDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTG 252
Query: 292 F-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350
F R A + FGV PD+ T+ K I GLP+ A +++ME P G T GN
Sbjct: 253 FGRTGEWFAAQTFGVVPDIMTIAKGIASGLPLSAVVASKELMEQ-WPLGS--HGTTFGGN 309
Query: 351 PLAMTAGIHTLKRLKE 366
P+A A + TL+ +KE
Sbjct: 310 PVACAAALATLEVIKE 325
|
Length = 433 |
| >gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 3e-48
Identities = 98/315 (31%), Positives = 145/315 (46%), Gaps = 23/315 (7%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDY-VGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLL 140
P+ +G+ D+DG+ Y D+ +G G A+ GH+ V AL E ++G + P
Sbjct: 58 PLFVAEARGARFTDVDGHRYDDFCLGDTG-AMFGHSPAPVARALAEQARRGLTTMLPSED 116
Query: 141 ENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 200
+ E ++ + + + T+A VLR ARA TGR +I+ F GCYHG D V
Sbjct: 117 AAWVGEE-LARRFGLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFV 175
Query: 201 KAGSGVAT-----LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255
G LG AT T FND++ALE G++AA++ EP
Sbjct: 176 DLVDGRPVQRPGLLG----QVHDLTAT--TRVVEFNDLAALEAALA--DGDVAAVLAEPA 227
Query: 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKI 315
+ N G + P+P F A+R +T+ G LL+ DE T GG G+ PD +GK
Sbjct: 228 MTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGGYTRAHGLEPDFLVVGKP 286
Query: 316 IGGGLPVGAYGGRRDI---MEMVAPAGPMYQAG---TLSGNPLAMTAGIHTLKRLKEPGT 369
I GG+P YG ++ + + P +G TLS N LAM A TL +
Sbjct: 287 IAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAA 346
Query: 370 YEYLNKITGELTQGI 384
Y ++ + L G+
Sbjct: 347 YAHMLALAARLAAGL 361
|
Length = 453 |
| >gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 5e-46
Identities = 100/317 (31%), Positives = 156/317 (49%), Gaps = 30/317 (9%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG------ 135
P+V + + +WDI+GNEYID++ +GH + +V+ A+ E K +
Sbjct: 24 PLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFP 83
Query: 136 -APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194
P LL L E+ P V F SG++A G ++ ARA+T R +I+ + Y+G
Sbjct: 84 VEPLLLAEKLIEIAPGDNPK---VSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGS 140
Query: 195 --------ADPFLVKAG----SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242
F V+A S V + PD P G + V ++ FE
Sbjct: 141 TYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKM--ECVEYIKEKFEG 198
Query: 243 N--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 299
+AA+ EP+ G++G I P D+ +++I E+G LL+ DEV +G R A
Sbjct: 199 EVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFA 258
Query: 300 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 359
E+FGV PD+ TLGK +GGGLP+ A GR +IM+ + P + TLSGNP+A A +
Sbjct: 259 IEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDSLPPLAHAF---TLSGNPVASAAALA 315
Query: 360 TLKRLKEPGTYEYLNKI 376
++ ++E + K+
Sbjct: 316 VIEEIEEKNLLKRAEKL 332
|
Length = 443 |
| >gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 5e-46
Identities = 107/316 (33%), Positives = 153/316 (48%), Gaps = 43/316 (13%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFG 135
P+V + +G + D+DGN Y+D+ +GHA +V+ A+ E +K T F
Sbjct: 36 YPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFY 95
Query: 136 APCLLENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193
+E LAE ++ P V F NSGTE+ +++AR TGR+ II F G +HG
Sbjct: 96 YEPAVE--LAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHG 153
Query: 194 -----------------HADPFLVKAGSGVATLGLPDSPGVPKGA-TYETLTAPFNDVSA 235
P + GV + P+ P G E N V
Sbjct: 154 RTYGSLSLTASKPVQRKGFFPLM----PGVIHVPYPNPYRNPWGIENPEECG---NAVLD 206
Query: 236 L--ENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
+ LF+ E+AAII+EP+ G G++ P +F +R++ + G LLI DEV TG
Sbjct: 207 FIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTG 266
Query: 292 F-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350
R A E+FGV PD+ TL K I GGLP+GA GR ++M + P G A T GN
Sbjct: 267 MGRTGKMFAIEHFGVEPDIITLAKAIAGGLPLGAVIGRAELMFL--PPGS--HANTFGGN 322
Query: 351 PLAMTAGIHTLKRLKE 366
P+A A + TL+ L+E
Sbjct: 323 PVAAAAALATLEELEE 338
|
Length = 441 |
| >gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 1e-45
Identities = 104/300 (34%), Positives = 149/300 (49%), Gaps = 23/300 (7%)
Query: 75 FKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GT 132
F + G PI KG+ + D +G Y+D+ +GH V A+ E +
Sbjct: 5 FPTYGRFPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHV 64
Query: 133 SFGAPCLLENVLAEMV---ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 189
S L N L E V ++ + ++V F NSG EA L+LAR TG+ +I+ FE
Sbjct: 65 S----NLFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQ 120
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249
+HG F + +G + P +P G T+ PFND+ AL+ + E+AA
Sbjct: 121 SFHGRT--FGTMSATGQEKIKEGFGPLLP-GFTH----VPFNDIKALKEVMN---EEVAA 170
Query: 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 308
++LE V G G I P FL ++ + K+ GALLI DEV TG R A E FG+ PD
Sbjct: 171 VMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPD 230
Query: 309 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
+ T+ K +G G+PVGA G++ E+ GP T GNPLAM A L+ +K+P
Sbjct: 231 IVTVAKGLGNGIPVGAMIGKK---ELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPS 287
|
Length = 377 |
| >gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 3e-43
Identities = 97/331 (29%), Positives = 148/331 (44%), Gaps = 45/331 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 137
P+V KG +WD++G +Y D++ ++ GH ++LAAL +K T +F
Sbjct: 14 PVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAFYND 73
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEG 189
L LAE I+ + + V +NSG EA L+ AR + + +II G
Sbjct: 74 VL---GLAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNG 130
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSPGV-----PKGATYETLTAPFNDVSALENLFENNK 244
+ G + P P +E +NDV ALE L ++
Sbjct: 131 NFSGRT----------IGACSASTDPKCYNNFGPFVPGFEL--VDYNDVEALEKLLQDPN 178
Query: 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG---AQE 301
+AA I+EP+ G +G I P +L + + K+ LLI DE+ TG L G A +
Sbjct: 179 --VAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTG--LGRTGKLLAHD 234
Query: 302 YFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG-TLSGNPLAMTAGIH 359
+ GV PD+ LGK + GGL P+ A D+M ++ P + G T GNPLA +
Sbjct: 235 HEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPG----EHGSTYGGNPLACAVAVE 290
Query: 360 TLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390
L+ LKE E ++ G+ + KK
Sbjct: 291 ALEVLKEEKLAENAQRLGEVFRDGLKELLKK 321
|
Length = 400 |
| >gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 6e-43
Identities = 108/325 (33%), Positives = 151/325 (46%), Gaps = 45/325 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGAP 137
P+ +G+ +WD+DG EY+D +G +GHA V+ A+ + S F
Sbjct: 26 PLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATE 85
Query: 138 CLLENVLAEMVIS--AVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 195
+ LAE ++ P V F NSG EA +LAR TGR +I+ EG +HG
Sbjct: 86 PQIA--LAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGRT 142
Query: 196 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTA-----PFNDVSALENLFENNKGEIAAI 250
G+ T G P K A +E L P+ DV AL + + AA+
Sbjct: 143 ------MGALALT-GQPA-----KRAPFEPLPGGVEHVPYGDVDALAAAVD---DDTAAV 187
Query: 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 309
LEP+ G +G + P +L A R IT +GALL+ DEV TG R A ++ GVTPD+
Sbjct: 188 FLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDV 247
Query: 310 TTLGKIIGGGLPVGAYGGRRDIMEMVA--PAGPMYQAG----TLSGNPLAMTAGIHTLKR 363
TL K +GGGLP+GA +A PA + G T GNP+A A + L
Sbjct: 248 VTLAKGLGGGLPIGA---------CLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDT 298
Query: 364 LKEPGTYEYLNKITGELTQGIIDAG 388
+ G E ++ +L GI G
Sbjct: 299 IASEGLLENAERLGEQLRAGIEALG 323
|
Length = 398 |
| >gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 5e-41
Identities = 109/333 (32%), Positives = 160/333 (48%), Gaps = 42/333 (12%)
Query: 76 KSVGGQPIVF-DSVKGSHMWDIDGNEYIDYVGSWGPAII--GHADDQVLAALGETMKKGT 132
+ VG ++ D + + +WD +G YID+ G A++ GH +V+AA+ + + T
Sbjct: 16 RGVGMTTQIYADRAENAEIWDKEGRRYIDFAA--GIAVVNTGHRHPRVIAAVKAQLDRFT 73
Query: 133 SFGAPCL-LEN--VLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 187
+ EN LAE + + VP + FV +G EA +++ARA TGR +I F
Sbjct: 74 HTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAF 133
Query: 188 EGCYHGHADPFL----------VKAGSGVATLGLPDSPGVP-----KGATYETLTAPFND 232
G +HG F+ K G G +PD VP G + E
Sbjct: 134 GGGFHGRT--FMGMSLTGKVVPYKVGFGAM---MPDVYHVPFPVELHGVSVE------QS 182
Query: 233 VSALENLFENN--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
++AL+ LF+ + +AAII+EPV G GF F+ A+R + ++G LLI DEV T
Sbjct: 183 LAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT 242
Query: 291 GF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
GF R A E+ V DLTT+ K + GG P+ A GR +IM+ P G GT G
Sbjct: 243 GFARTGKLFAMEHHEVAADLTTMAKGLAGGFPLAAVTGRAEIMDAPGPGG---LGGTYGG 299
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382
NPL + A L ++E E N++ L Q
Sbjct: 300 NPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQ 332
|
Length = 425 |
| >gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 6e-41
Identities = 90/328 (27%), Positives = 127/328 (38%), Gaps = 54/328 (16%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK------GTSFG 135
P V +G ++ DIDG Y+D + GH ++ A+ + + K G
Sbjct: 27 PRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTH 86
Query: 136 APCLLENVLAEMVISAVPSIEM--VRFVNSGTEACMGVLRLARAF------TGRERIIKF 187
P + LAE + P + V F +SG+EA L++A + R++ I
Sbjct: 87 EPAIE---LAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISR 143
Query: 188 EGCYHGHADPFLVKAGSGVATLGLPDSPG---------------------VPKGATYETL 226
YHG + + + +G E
Sbjct: 144 RNGYHG----------DTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGD 193
Query: 227 TAPFNDVSALENLFE-NNKGEIAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLI 284
LE L + IAA I+EPVVG G + P P +L +R I + G LLI
Sbjct: 194 EEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLI 253
Query: 285 FDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIME--MVAPAGP 340
DEV TGF R A E+ G+ PD+ L K + GG LP+ A I E AG
Sbjct: 254 ADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGA 313
Query: 341 MYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
T SGNPLA A + L L+E
Sbjct: 314 FMHGHTYSGNPLACAAALANLDILEEED 341
|
Length = 449 |
| >gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 9e-41
Identities = 107/337 (31%), Positives = 158/337 (46%), Gaps = 59/337 (17%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAII--GHADDQVLAALGETMKKGTSFGAPCL 139
PI D + +WD++G EY+D+ G G A++ GH +V+AA+ +KK C
Sbjct: 24 PIFADRAENCRVWDVEGREYLDFAG--GIAVLNTGHLHPKVVAAVEAQLKK---LSHTCF 78
Query: 140 LENVLAEMVISAVPSIEMVRFVN---------------SGTEACMGVLRLARAFTGRERI 184
V++ P +E+ +N +G+EA +++ARA T R +
Sbjct: 79 -------QVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGV 131
Query: 185 IKFEGCYHGHADPFLVKAGSGVATLGL-----PDSPGV---PKGATYETLTAPFNDVS-- 234
I F G YHG TL L P S G+ P P + VS
Sbjct: 132 IAFTGAYHGRT----------HYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSED 181
Query: 235 ----ALENLFENNK--GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288
++E +F+N+ +IAAII+EPV G GF A P F+ +R + E+G +LI DEV
Sbjct: 182 DAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEV 241
Query: 289 MTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 347
TG R A E GV DLTT K I GG P+ GR ++M+ +AP G GT
Sbjct: 242 QTGAGRTGTLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGG---LGGTY 298
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
+GNP+A A + LK ++ + N + +L G+
Sbjct: 299 AGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGL 335
|
Length = 425 |
| >gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 1e-40
Identities = 99/300 (33%), Positives = 146/300 (48%), Gaps = 33/300 (11%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS-----FGA 136
IVF KGS ++D +G Y+D++ W +GH + ++ AL +K + +
Sbjct: 19 DIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAFYNE 78
Query: 137 PCL-LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGC 190
P L +L + + V F NSG EA G ++LAR + G II F+
Sbjct: 79 PMAKLAGLL-----TQHSCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHS 133
Query: 191 YHGHADPFLVKAG-SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249
+HG + +G G T+ P PG PK A ND++++E L + + A
Sbjct: 134 FHGRTLATMSASGKPGWDTIFAPQVPGFPK--------AELNDIASVEKLITD---KTVA 182
Query: 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 308
++LEPV G G I +F+ +R +TK++G LLI DEV TG R A E G+ PD
Sbjct: 183 VMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPD 242
Query: 309 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
+ TLGK IGGG+P+ A + VA Q GT +GNPL G+ + +L PG
Sbjct: 243 IMTLGKGIGGGVPLAALLAK----AEVAVFEAGDQGGTYNGNPLMTAVGVAVISQLLAPG 298
|
Length = 395 |
| >gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 2e-39
Identities = 86/315 (27%), Positives = 142/315 (45%), Gaps = 44/315 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P+V D G+ + D+DG YID + S +GHA +V+ A+ K + P +
Sbjct: 25 PLVIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHY-TPAYMY 83
Query: 142 NV----LAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG-- 193
+ LA+ + P + V F SG++A G+++ ARA+TGR II F YHG
Sbjct: 84 HEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGST 143
Query: 194 ---------------HADPFLVKAGSGVATLGLPDS----PGVPKGATYETLTAPFNDVS 234
P L G + PD P E AP +
Sbjct: 144 YGSLSMSGISLNMRRKYGPLL----PGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKE-- 197
Query: 235 ALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
+FE E+A I++E + G+ G + P P + A+ + +E+G L D++ G
Sbjct: 198 ----MFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGL 253
Query: 293 -RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
R + +F +TPDL + GK + GG+P+ A GR++IME + ++ T NP
Sbjct: 254 GRTGKWSSISHFNITPDLMSFGKSLAGGMPMSAIVGRKEIMESLEAPAHLF---TTGANP 310
Query: 352 LAMTAGIHTLKRLKE 366
++ A + T+ +++
Sbjct: 311 VSCAAALATIDMIED 325
|
Length = 445 |
| >gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 4e-39
Identities = 105/297 (35%), Positives = 159/297 (53%), Gaps = 23/297 (7%)
Query: 86 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLEN 142
+ + + +WD++G EYID+ GH +V+AA+ + + + T P
Sbjct: 27 ERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYV 86
Query: 143 VLAEMVISAVPSIE---MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199
LAE + + P I+ F +G EA +++ARA+TGR +I F G +HG L
Sbjct: 87 TLAERINALAP-IDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRT--LL 143
Query: 200 VKAGSG-VA--TLGLPDSPGVPKGATYETL---TAPFNDVSALENLFENNKG--EIAAII 251
A +G VA +G PG A Y + +S++E LF+ + ++AAI+
Sbjct: 144 TMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAIL 203
Query: 252 LEPVVGNSGF-IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 309
LEP+ G GF +AP P+F++A+R + E+G LLI DEV TGF R A EY+ V PDL
Sbjct: 204 LEPIQGEGGFNVAP-PEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDL 262
Query: 310 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
T+ K +GGG+P+ A GR ++M+ AP G GT +GNPLA+ A + L + E
Sbjct: 263 ITMAKSLGGGMPISAVVGRAEVMDAPAPGG---LGGTYAGNPLAVAAALAVLDVIAE 316
|
Length = 421 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (367), Expect = 5e-39
Identities = 100/314 (31%), Positives = 143/314 (45%), Gaps = 27/314 (8%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGAP 137
+ F+ +G + D DG Y+D+ +GHA ++ AL E +K S + P
Sbjct: 14 DLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIP 73
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCY 191
+ LAE ++ + + V F NSG EA ++ AR + R RII FEG +
Sbjct: 74 --EQERLAERLVENSFA-DKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAF 130
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251
HG + G G P VP G PF D+ AL+ N AAI+
Sbjct: 131 HGRTLATIAAGGQEKYLEGF--GPLVP-GFDQ----VPFGDIEALKAAITPN---TAAIL 180
Query: 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310
+EP+ G G +FL +R++ ENG LLIFDEV G R A E+ GVTPD+
Sbjct: 181 IEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIM 240
Query: 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370
+ K IGGG P+GA + + + P T GNPLAM G L + PG
Sbjct: 241 AVAKGIGGGFPLGACLATEEAAKGMTPGT---HGSTYGGNPLAMAVGNAVLDVILAPGFL 297
Query: 371 EYLNKITGELTQGI 384
+ + ++ L Q +
Sbjct: 298 DNVQRMGLYLKQKL 311
|
Length = 389 |
| >gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 3e-37
Identities = 96/315 (30%), Positives = 149/315 (47%), Gaps = 31/315 (9%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 137
P+VF KGS +WD +G +Y+D++ ++ GH +++ AL E +K T +F
Sbjct: 58 PVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAFYND 117
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE---------RIIKFE 188
AE + S +MV +N+G E ++LAR + G E I+
Sbjct: 118 KF--PEFAEYLTSMF-GYDMVLPMNTGAEGVETAIKLARKW-GYEKKGIPKNEAIIVSCC 173
Query: 189 GCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247
GC+HG + + AT G P PG K F D+ ALE +FE + I
Sbjct: 174 GCFHGRTLAAISMSCDNEATRGFGPLLPGHLK--------VDFGDLDALEKIFEEDGDRI 225
Query: 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT 306
AA + EP+ G +G + P +L A+R + ++ L+I DE+ TG R A ++ V
Sbjct: 226 AAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVR 285
Query: 307 PDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 365
PD+ LGK +GGG +PV A +D+M + P T GNPLA + L+ ++
Sbjct: 286 PDVVILGKALGGGVIPVSAVLADKDVMLCI---KPGEHGSTFGGNPLASAVAMAALQVVQ 342
Query: 366 EPGTYEYLNKITGEL 380
+ E K+ EL
Sbjct: 343 DEKLAERSAKLGQEL 357
|
Length = 474 |
| >gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 5e-37
Identities = 104/348 (29%), Positives = 154/348 (44%), Gaps = 61/348 (17%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P+ + +G +++D DG EYID + SW I GH ++ AA+ E + K LE
Sbjct: 14 PLPIERAEGVYLYDEDGREYIDGISSWWVNIHGHNHPEINAAIKEQLDK---------LE 64
Query: 142 NV------------LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLA------RAFTGRE 182
+V LAE ++ P +E V F +SG+ A L++A + G+
Sbjct: 65 HVMFGGLTHEPAIELAERLVEITPEGLEKVFFSDSGSVAVEVALKMALQYWQNQGRPGKT 124
Query: 183 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG---VPKGATYETLTAPFNDV------ 233
R + F YHG D F + + D G + + +E + P
Sbjct: 125 RFLAFRNGYHG--DTF--------GAMSVGDVGGFHALFEPLLFEVVFIPAPPCYRCWDP 174
Query: 234 --------SALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLI 284
+ALE L E + EIAA I+EP+V G G P++L +R + E G LLI
Sbjct: 175 DDCEAECLAALEALLEEHADEIAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLI 234
Query: 285 FDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMV---APAG 339
DE+ TGF R A E+ GVTPD+ L K + GG LP+ A +I E
Sbjct: 235 ADEIATGFGRTGKLFACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFYSDDEGK 294
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 387
T +GNPLA A + +L L+E E + +I +L G+
Sbjct: 295 AFMHGHTYTGNPLACAAALASLDLLEEEDWLEQVARIEAQLRAGLAPL 342
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 1e-36
Identities = 94/282 (33%), Positives = 130/282 (46%), Gaps = 39/282 (13%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVL--AE 146
+GS +WD G EYID+ G +GHA + AL E K G E VL A+
Sbjct: 29 EGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAK 88
Query: 147 MVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLV 200
+I A + + V F NSG EA L+LAR + + + I+ F+ +HG F V
Sbjct: 89 KLIDATFA-DRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRT-LFTV 146
Query: 201 KAGSGVATLGLP----DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256
AG G P D +P + A +ND+++ L ++ A+I+EP+
Sbjct: 147 SAG------GQPKYSQDFAPLPPDIRH----AAYNDLNSASALIDDQT---CAVIVEPIQ 193
Query: 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKI 315
G G I FL +R + + ALLIFDEV TG R A ++GVTPD+ T K
Sbjct: 194 GEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKA 253
Query: 316 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLA 353
+GGG P+GA M + G T GNPLA
Sbjct: 254 LGGGFPIGA-------MLTTEKCASVMTVGTHGTTYGGNPLA 288
|
Length = 406 |
| >gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 2e-36
Identities = 91/287 (31%), Positives = 141/287 (49%), Gaps = 19/287 (6%)
Query: 91 SHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL--LENVLAEMV 148
+ + D G E+ID +G +G +GH + V++A+ + K L L +LA+ +
Sbjct: 74 NTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTL 133
Query: 149 ISAVP-SIEMVRFVNSGTEACMGVLRLARAFT---GRERIIKFEGCYHGHADPFLVKAGS 204
+ P ++ F NSGTE+ L+LA+A+ G+ I G +HG + L + +
Sbjct: 134 AALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGAL--SAT 191
Query: 205 GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK--GE-IAAIILEPVVGNSGF 261
+T P P +P PF ++ A+ K G+ +AA+ILEP+ G G
Sbjct: 192 AKSTFRKPFMPLLP-----GFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGV 246
Query: 262 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG- 319
I P +L A+R++ E GALLI DEV TG R A E+ V PD+ L K +GGG
Sbjct: 247 ILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGV 306
Query: 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
+P+GA ++ ++ P T GNPLA A + T+ L E
Sbjct: 307 MPIGATIATEEVFSVLFD-NPFLHTTTFGGNPLACAAALATINVLLE 352
|
Length = 459 |
| >gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 2e-36
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 30/335 (8%)
Query: 76 KSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF 134
VG P+ +G+ + D+DGN ID+ IGH+ +V+ A+ + + T
Sbjct: 9 SGVGVTLPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHT 68
Query: 135 G---APCLLENVLAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAFTGRERIIKFEG 189
P LAE + P + F NSG EA +++AR++TGR ++ F+
Sbjct: 69 CFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDH 128
Query: 190 CYHGHAD----------PFLVKAGSGV---ATLGLPDSPGVPKGATYETLTAPFNDV-SA 235
+HG + P+ K+G G P G + L+ + +A
Sbjct: 129 GFHGRTNMTMALTAKVMPY--KSGFGPFAPEVYRAPLPYPYRDGLLDKQLS--TDGELAA 184
Query: 236 LENLFENNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 292
+F + G +AA+++EPV G GFI P F+ A+ +E+G + I DEV TGF
Sbjct: 185 ARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFA 244
Query: 293 RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352
R A E+ G PDL T K + GLP+ GR +IM+ AP G GT +GNPL
Sbjct: 245 RTGAMFACEHEGPEPDLITTAKSLADGLPLSGVTGRAEIMDAPAPGG---LGGTYAGNPL 301
Query: 353 AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 387
A A + L ++ G E +I +T +
Sbjct: 302 ACAAALAVLAIIESEGLIERARQIGRLVTDRLTTL 336
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420 |
| >gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-35
Identities = 94/286 (32%), Positives = 135/286 (47%), Gaps = 32/286 (11%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMV 148
+G ++WD G Y+D + G ++GH + + + E ++K G P EM+
Sbjct: 14 EGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAG-PMFEHEEKEEML 72
Query: 149 --ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206
+S + E V NSGTEA L+ AR +TGR+ II +HG
Sbjct: 73 EELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGR------------ 120
Query: 207 ATLGLPDSPGVPK-GATYETLTA-----PFNDVSALENLFENNKGEIAAIILEPVVGNSG 260
T+G + PK +E L PFNDV A + E E AA+I EP+ G G
Sbjct: 121 -TMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAK---EAITKETAAVIFEPIQGEGG 176
Query: 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGL 320
+ K +F+ +R +T++ GALLI DEV +G R A E++ V PD+ T+GK IG G+
Sbjct: 177 IVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTMGKGIGNGV 236
Query: 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
PV D+ G T GNPLA A TL+ L+
Sbjct: 237 PVSLTLTNFDV-----ERGK--HGSTFGGNPLACKAVAVTLRILRR 275
|
Length = 364 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 5e-35
Identities = 96/286 (33%), Positives = 134/286 (46%), Gaps = 47/286 (16%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL--LENV--- 143
+GS +WD G EYID+ G +GH ++ AL E +K L + NV
Sbjct: 30 EGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEK--------LWHISNVFTN 81
Query: 144 -----LAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR--AFT----GRERIIKFEGCYH 192
LA+ +I A + E V F NSG EA +LAR A + II F +H
Sbjct: 82 EPALRLAKKLIDATFA-ERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFH 140
Query: 193 GHADPFLVKAGSGVATLGLPD-SPG---VPKGATYETLTAPFNDVSALENLFENNKGEIA 248
G F V G G P S G P T+ PFND++A++ + +++
Sbjct: 141 GRT-LFTVSVG------GQPKYSDGFGPKPADITH----VPFNDLAAVKAVIDDHT---C 186
Query: 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP 307
A+++EP+ G G I P+FL +R + ++ ALLIFDEV TG R A ++GVTP
Sbjct: 187 AVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTP 246
Query: 308 DLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353
D+ T K +GGG P+GA +I T GNPLA
Sbjct: 247 DILTSAKALGGGFPIGAMLTTAEIASHFKVG---THGSTYGGNPLA 289
|
Length = 403 |
| >gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-34
Identities = 85/302 (28%), Positives = 139/302 (46%), Gaps = 33/302 (10%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 137
P+VF +G H+WD++G Y+D++ ++ GH +++ AL E +K T +F
Sbjct: 20 PVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAFYND 79
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEG 189
E AE V + + V +N+G EA ++LAR + + I+ +G
Sbjct: 80 VFGE--FAEYVTK-LFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKG 136
Query: 190 CYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248
+HG + + + P PG K P+N++ ALE E++ +
Sbjct: 137 NFHGRTLGAISMSTDPDSRTNFGPYVPGFKK--------IPYNNLEALEEALEDHGPNVC 188
Query: 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG---AQEYFGV 305
A I+EP+ G +G + P +L +R + ++ LLI DE+ TG L G ++ V
Sbjct: 189 AFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTG--LGRTGKLLCVDHENV 246
Query: 306 TPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL 364
PD+ LGK + GG PV A D+M + P T GNPLA + L+ L
Sbjct: 247 KPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGE---HGSTYGGNPLACAVAVAALEVL 303
Query: 365 KE 366
+E
Sbjct: 304 EE 305
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 3e-34
Identities = 94/285 (32%), Positives = 134/285 (47%), Gaps = 31/285 (10%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P + +GS +WD G EYID+ G +GHA +++ AL E K G E
Sbjct: 18 PFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNE 77
Query: 142 NV--LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHG 193
V LA+ ++ A + + V F NSG EA L+LAR + + I+ F+ +HG
Sbjct: 78 PVLRLAKKLVDATFA-DKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHG 136
Query: 194 HADPFLVKAGSGVATLGLP----DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249
F V G G P +P G + AP+ND++A + L + A
Sbjct: 137 RT-LFTVSVG------GQPKYSQGFAPLPGGIKH----APYNDLAAAKALISDKT---CA 182
Query: 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 308
+I+EP+ G G + P FL +R + + ALLIFDEV TG R A ++GVTPD
Sbjct: 183 VIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD 242
Query: 309 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353
+ T K +GGG P+GA +I + T GNPLA
Sbjct: 243 ILTSAKALGGGFPIGAMLTTTEIAAHLKVGT---HGTTYGGNPLA 284
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 5e-34
Identities = 109/338 (32%), Positives = 164/338 (48%), Gaps = 50/338 (14%)
Query: 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTSFGA- 136
G P S G+ + D+DGN+YID+ G+ G +GH+ +V AL + + + T F
Sbjct: 35 GIPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGFNVM 94
Query: 137 --PCLLENVLAEMVISAVPSI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192
+E LAE + + P + V F+NSG EA +++AR +T R+ II F +H
Sbjct: 95 MYEPYIE--LAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFH 152
Query: 193 GHAD----------PFLVKAGSGVATLGLPDSPGV-----------PKGATYETLTAPFN 231
G P+ K G G P +P V P+G T E
Sbjct: 153 GRTLMTMTMTSKVKPY--KFGFG------PFAPEVYKAPFPYEYRRPEGLTEEQYDDFM- 203
Query: 232 DVSALENLF--ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
+ +N F E IAA+++EPV G GFI P F+ +R I E+G L + DE+
Sbjct: 204 -IEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQ 262
Query: 290 TGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348
TGF R A E+F V PDL T+ K +G G+P+ GR++IM+ AP G + GT +
Sbjct: 263 TGFARTGKYFAIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDESAP-GEL--GGTYA 319
Query: 349 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIID 386
G+PL A + L +++ E LN EL + +++
Sbjct: 320 GSPLGCAAALAVLDIIEK----ENLNDRAIELGKVVMN 353
|
Length = 451 |
| >gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-33
Identities = 88/320 (27%), Positives = 143/320 (44%), Gaps = 31/320 (9%)
Query: 70 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129
S VR++ P F +G + D++G EY+D++ G +GH + + + ++
Sbjct: 12 SNVRSY--PRKLPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQ 69
Query: 130 KGT---SFGAPCLLENVLAEMVISAVPSIEM---VRFVN-SGTEACMGVLRLARAFTGRE 182
G + L++ E +++ +P +M ++F SG +A ++LA+ +TGR
Sbjct: 70 SGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRT 129
Query: 183 RIIKFEGCYHGHADPFLVKAG------------SGVATLGLPDSPGVPKGATYETLTAPF 230
+I F G +HG L G GV + P P G E +
Sbjct: 130 NVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSN-- 187
Query: 231 NDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
+ EN E+ + + AA+ILE + G G +A ++L IR +T+++ LI DE
Sbjct: 188 ASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDE 247
Query: 288 VMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGT 346
V GF R A E+ G+ PD + K +GGGLP+ + + PAG GT
Sbjct: 248 VQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGGLPLAVLLIAPE-FDAWQPAG---HTGT 303
Query: 347 LSGNPLAMTAGIHTLKRLKE 366
GN LAM G L K+
Sbjct: 304 FRGNQLAMVTGTEALNYWKD 323
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442 |
| >gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 4e-33
Identities = 99/316 (31%), Positives = 158/316 (50%), Gaps = 21/316 (6%)
Query: 87 SVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENV 143
S + + + D++GNEYID+ GH ++AA+ + +++ T P
Sbjct: 28 SAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVT 87
Query: 144 LAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201
LAE + + P F +G EA +++ARA TGR +I F G +HG ++
Sbjct: 88 LAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRT--YMTM 145
Query: 202 AGSG-VA--TLGLPDSPG----VPKGATYETLTAPFNDVSALENLFENN--KGEIAAIIL 252
A +G VA +G PG VP + ++ + + A+E LF+++ ++AAII
Sbjct: 146 ALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQ-DSLDAIERLFKSDIEAKQVAAIIF 204
Query: 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311
EPV G GF + + AIRR+ E+G ++I DEV +GF R A +++ PDL T
Sbjct: 205 EPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMT 264
Query: 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371
+ K + GG+P+ G +IM+ AP G GT +GNPLA+ A L + + E
Sbjct: 265 MAKSLAGGMPLSGVVGNANIMDAPAPGG---LGGTYAGNPLAVAAAHAVLNIIDKESLCE 321
Query: 372 YLNKITGELTQGIIDA 387
N++ L +IDA
Sbjct: 322 RANQLGQRLKNTLIDA 337
|
Length = 421 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 4e-32
Identities = 98/350 (28%), Positives = 142/350 (40%), Gaps = 79/350 (22%)
Query: 85 FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVL 144
F S KG ++D++G EY+D +GH D + A+ E L
Sbjct: 1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQ-------------AGTL 47
Query: 145 AEM--VISAVPSIEMVR------------FVNSGTEACMGVLRLARAFTGRER------- 183
A + V +P +E+ + F NSGTEA ++ AR + R R
Sbjct: 48 AHVSNVYHTIPQVELAKRLVASSFADRVFFCNSGTEANEAAIKFARKYQ-RVRAPDKKDP 106
Query: 184 -------IIKFEGCYHGHADPFLVKAGSGVATLG-----------LPDSPGVPKGATYET 225
+ F +HG TLG P P +P G T+
Sbjct: 107 AASSATEFVSFSNSFHGR-------------TLGALALTSKEQYRTPFEPLMP-GVTF-- 150
Query: 226 LTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285
+ ++ A L + KG+ AA+ +EPV G G +FL +R + E GALL+F
Sbjct: 151 --VEYGNLEAARKLIQ--KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVF 206
Query: 286 DEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA-GPMYQ 343
DEV G R Y A E +GV PD+ TL K + GGLP+GA + E VA A P
Sbjct: 207 DEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGGLPIGAV----LVTEKVASAINPGDH 262
Query: 344 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGH 393
T +G PL A + L ++ +PG + K L + + H
Sbjct: 263 GSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPH 312
|
Length = 382 |
| >gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 7e-32
Identities = 94/291 (32%), Positives = 138/291 (47%), Gaps = 21/291 (7%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
I F +G+++ D DG +Y+D+ G +G QV AL + G + +P L
Sbjct: 12 AIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQAL--QKQAGLIWHSPNLYL 68
Query: 142 NVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199
N L E V + + + F NSG EA +++AR TG++ II F+ +HG +
Sbjct: 69 NSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSM 128
Query: 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259
G G GVP +Y A FND+++++ L N AA++LE V G S
Sbjct: 129 SATGQDKIKDGF--GDGVP-HFSY----AIFNDLNSVKALVNKNT---AAVMLELVQGES 178
Query: 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGG 318
G + DF+ A+ +E G LLI DEV TG R A E++G+ PD+ TL K +
Sbjct: 179 GVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLAN 238
Query: 319 GLPVGAYGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
G+PVGA + + A G T GN L+M A TL + G
Sbjct: 239 GVPVGAMLAKSSL----GGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAG 285
|
Length = 375 |
| >gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 8e-32
Identities = 95/283 (33%), Positives = 136/283 (48%), Gaps = 19/283 (6%)
Query: 95 DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL--LENVLAEMVISAV 152
D GNE+ID +G +G +GH + V+AA+ + K L L +LA+ + +
Sbjct: 71 DTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALT 130
Query: 153 P-SIEMVRFVNSGTEACMGVLRLARAFT---GRERIIKFEGCYHGHADPFLVKAGSGVAT 208
P ++ F NSGTE+ L+LA+A+ G+ I G +HG + L + +
Sbjct: 131 PGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGAL--SATAKPA 188
Query: 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILEPVVGNSGFIAPK 265
P P +P G + F D+ A+ K ++AAIILEP+ G G I P
Sbjct: 189 FRKPFMPLLP-GFHH----VAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPP 243
Query: 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVG 323
+L A+R + E GALLI DEV TG R A E+ GV PD+ L K +GGG +P+G
Sbjct: 244 EGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIG 303
Query: 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
A + V P T GNPLA A + T+ L E
Sbjct: 304 ATIATEAVFS-VLFDNPFLHTTTFGGNPLACAAALATINELLE 345
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442 |
| >gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 1e-31
Identities = 97/319 (30%), Positives = 140/319 (43%), Gaps = 43/319 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPC--- 138
P+V +GS++WD +G Y+D+ IGH +V+AA+ E + + AP
Sbjct: 36 PMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTV-APAHAN 94
Query: 139 LLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197
+ A ++ P + V F N G +A +R+AR TGR +++ YHG
Sbjct: 95 DARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHG---- 150
Query: 198 FLVKAGSGVATLG----LPDSPGVPKGATYETLTAPFNDVS-------------ALENL- 239
GS + G P+ G + PF S AL +L
Sbjct: 151 ---GTGSAINLTGDPRRWPNDTGRAGVVHF---FGPFLYRSEFHATTEEEECERALAHLE 204
Query: 240 ----FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
E IAAI+LE V G +G + P P +L +R + +G +LI DEVM GF R
Sbjct: 205 RVIELEG-PSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRT 263
Query: 295 AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAG-TLSGNPL 352
A E+FGV PDL T K + G +P+G I A Y G T SG+PL
Sbjct: 264 GKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADR--PYPGGLTYSGHPL 321
Query: 353 AMTAGIHTLKRLKEPGTYE 371
A A + T+ ++E G E
Sbjct: 322 ACAAAVATINAMEEEGIVE 340
|
Length = 451 |
| >gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 8e-31
Identities = 111/355 (31%), Positives = 158/355 (44%), Gaps = 72/355 (20%)
Query: 64 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG----PAIIGHADDQ 119
MP N R FK+ P + S +G + D DG + +D G+ G A GH +
Sbjct: 20 MPFTAN---RQFKA---APRLLVSAEGMYYTDADGRKILD--GTAGLWCCNA--GHGRPE 69
Query: 120 VLAALGETMKK-----GTSFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLR 173
++ A+ G P E LAE + P ++ V F NSG+E+ L+
Sbjct: 70 IVEAVARQAATLDYAPAFQMGHPLAFE--LAERLAELAPGGLDHVFFTNSGSESVDTALK 127
Query: 174 LARAF------TGRERIIKFEGCYHG-------------HADPFLVKAGSGV----ATLG 210
+A A+ R R+I E YHG + F GV TL
Sbjct: 128 IALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGG-LLPGVDHLPHTLD 186
Query: 211 LPD---SPGVPK-GATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPK 265
LP+ S G P+ GA D LE L + IAA+I+EP+ G++G + P
Sbjct: 187 LPENAFSKGQPEHGAE-------LAD--DLERLVALHDASTIAAVIVEPMAGSAGVLVPP 237
Query: 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVG 323
+L +R I ++G LLIFDEV+TGF RL A E FGVTPD+ T K + G +P+G
Sbjct: 238 KGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPMG 297
Query: 324 AYGGRRDIME--MVAPAGPM-----YQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371
A +I + M P + Y T S +P+A AG+ TL +E +E
Sbjct: 298 AVIASDEIYDAFMQGPEYAIEFFHGY---TYSAHPVACAAGLATLDIYREEDLFE 349
|
Length = 445 |
| >gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 3e-30
Identities = 96/312 (30%), Positives = 145/312 (46%), Gaps = 37/312 (11%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL-- 139
P+ +G + D++GN+Y+D + G +GH VL ++ + + G L
Sbjct: 41 PLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDLTT 100
Query: 140 -LENVLAEMVISAVPSIE---MVRFVN-SGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194
L++ +E ++S +P ++F SG +A ++LA+ +TGR +I F G YHG
Sbjct: 101 PLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGM 160
Query: 195 ADPFLVKAG------------SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242
L G GV + P P G E V AL FEN
Sbjct: 161 THGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEA------GVKALTYYFEN 214
Query: 243 NKGEI-------AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
++ AA+ILE + G G ++L IR +T+++G LLI DEV GF R
Sbjct: 215 FIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFART 274
Query: 295 AYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 354
A E+ G+ PD+ + K +GGGLP+ G +++ + P G GT GN LAM
Sbjct: 275 GKMFAFEHAGIEPDIIVMSKAVGGGLPLAVLGIKKE-FDAWQPGG---HTGTFRGNQLAM 330
Query: 355 TAGIHTLKRLKE 366
G+ TLK LKE
Sbjct: 331 ATGLTTLKILKE 342
|
Length = 459 |
| >gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 9e-30
Identities = 99/307 (32%), Positives = 147/307 (47%), Gaps = 56/307 (18%)
Query: 95 DIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMKKGTSFGAPCLLEN------VLAE 146
D+DGN ID GS G A+ +G++ +V+ A+ E + + F C + +AE
Sbjct: 52 DVDGNRLIDL-GS-GIAVTSVGNSAPRVVEAVREQVAR---FTHTCFMVTPYEGYVAVAE 106
Query: 147 MVISAVPSIEMVRFV--NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD-------- 196
+ P R NSG EA +++AR++TGR+ ++ F+ YHG +
Sbjct: 107 QLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAK 166
Query: 197 --PFLVKAGSGVATLGLPDSPGVPKGATYET-LTAPFNDVSALEN-----------LFEN 242
P+ K+G G P +P V Y ++ P+ D L + E
Sbjct: 167 SMPY--KSGFG------PFAPEV-----YRAPMSYPYRDPKGLATDGEEAAARAITVIEK 213
Query: 243 NKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 299
G +AA+I+EP+ G GFI P FL A+ +ENG + I DEV TGF R A
Sbjct: 214 QVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFA 273
Query: 300 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 359
E+ G+ PDL T K I GGLP+ A GR +IM+ P G GT GNP+A A +
Sbjct: 274 CEHEGIVPDLITTAKGIAGGLPLSAVTGRAEIMDAPHPGG---LGGTYGGNPVACAAALA 330
Query: 360 TLKRLKE 366
++ ++E
Sbjct: 331 AIETIEE 337
|
Length = 443 |
| >gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 3e-28
Identities = 95/330 (28%), Positives = 139/330 (42%), Gaps = 72/330 (21%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--------TS 133
P+ +G ++ D++G ++ID + G +GH V+ A+ + + T+
Sbjct: 46 PLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLDLTT 105
Query: 134 ----------FGAPCLLENVLAEMVISAVPSIEMVRFVN-SGTEACMGVLRLARAFTGRE 182
F L E E I +F +GT+A L+L + TGR
Sbjct: 106 PVKDQFVQDLFA--SLPEAFAREAKI---------QFCGPTGTDAVEAALKLVKTATGRS 154
Query: 183 RIIKFEGCYHGHADPFLVKAGS------------GVATL----------GLPDSPGVPKG 220
++ F+G YHG + L G+ GV L GL GV
Sbjct: 155 TVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRAN 214
Query: 221 ATYETLTAPFNDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITK 277
Y LENL ++ + + AA+ILE V G G I ++L +RRIT+
Sbjct: 215 LHY------------LENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITE 262
Query: 278 ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA 336
E G LI DE+ +GF R A E+ G+ PD+ L K IGG LP+ R +
Sbjct: 263 EAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGSLPLAVVVYREWLDTW-- 320
Query: 337 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
P AGT GN +AM AG TL+ +KE
Sbjct: 321 --QPGAHAGTFRGNQMAMAAGSATLRYIKE 348
|
Length = 464 |
| >gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 4e-28
Identities = 102/321 (31%), Positives = 143/321 (44%), Gaps = 40/321 (12%)
Query: 83 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS---FGAP 137
+V + +GS +WD G EY+D +GH D ++AAL E K TS + AP
Sbjct: 24 VVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAP 83
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR---AFTGR----ERIIKFEGC 190
L LAE +++A E V NSGTEA ++L R + GR I+ F G
Sbjct: 84 PLK---LAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGS 140
Query: 191 YHGHADPFLVKAGSGVATLGLPDSPGVPK-GATYETLTA-----PFNDVSALENLFENNK 244
+HG TL + PK YE L FNDV ALE
Sbjct: 141 FHGR-------------TLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAG-- 185
Query: 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 303
G++AA++LEP+ G G + P FL +R + ++ ALL+ DE+ G R A
Sbjct: 186 GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQE 245
Query: 304 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 363
VTPD+ TL K +GGG P+GA + E + T GNPLA L++
Sbjct: 246 QVTPDIVTLAKALGGGFPIGAMLAGPKVAETMQFGA---HGTTFGGNPLAAAVARVALRK 302
Query: 364 LKEPGTYEYLNKITGELTQGI 384
L P + + + L G+
Sbjct: 303 LASPQIAANVARQSAALRAGL 323
|
Length = 408 |
| >gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 3e-27
Identities = 98/322 (30%), Positives = 138/322 (42%), Gaps = 68/322 (21%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
PI +G++++ DG E ID + SW A GH + A+ E + + L+
Sbjct: 25 PIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDR---------LD 75
Query: 142 NV------------LAEMVISAVP-SIEMVRFVNSGTEA-------CMGVLRLARAFTGR 181
+V LA+ +++ P ++ V F +SG+ A + R R GR
Sbjct: 76 HVIFAGFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRN-RGEPGR 134
Query: 182 ERIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKGATYET 225
R + G YHG HA P L + T P P G T
Sbjct: 135 SRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFE----QVTAPFP-----PDGYEQAT 185
Query: 226 LTAPFNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLI 284
L ALE L E + GEIAA I+EP+V G G + P +L +RRI +G LLI
Sbjct: 186 L-------DALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLI 238
Query: 285 FDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMV---APAG 339
FDE+ TGF R A E GV+PD+ L K + GG LP+ A +I E A
Sbjct: 239 FDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAK 298
Query: 340 PMYQAGTLSGNPLAMTAGIHTL 361
+ + + NPLA A +L
Sbjct: 299 AFMHSPSYTANPLACAAANASL 320
|
Length = 423 |
| >gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 9e-26
Identities = 102/346 (29%), Positives = 148/346 (42%), Gaps = 54/346 (15%)
Query: 64 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 123
MP N R FK P + + KG + DG +D GH +++ A
Sbjct: 17 MPFTAN---RQFKK---APRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEA 70
Query: 124 LGE---TMKKGTSFG----APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176
+ + +F L N +AE+ A + V F NSG+E+ L++A
Sbjct: 71 VRAQAGELDYAPAFQMGHPKAFELANRIAEI---APGGLNHVFFTNSGSESVDTALKIAL 127
Query: 177 AF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLG---------LPDSPGVPKGA 221
A+ R R+I E YHG + G V + LP +P
Sbjct: 128 AYHRARGEGSRTRLIGRERGYHG-----VGFGGISVGGIVPNRKAFGALLPGVDHLPH-- 180
Query: 222 TYETLTAPFND---------VSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271
T + F+ LE L ++ IAA+I+EPV G++G + P +L
Sbjct: 181 TLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQR 240
Query: 272 IRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRR 329
+R I ++G LLIFDEV+TGF RL A +YFGVTPDL T K + G +P+GA
Sbjct: 241 LREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSS 300
Query: 330 DIMEMV---APAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPGTYE 371
+I + AG + G T SG+PLA A + TL + G
Sbjct: 301 EIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLT 346
|
Length = 442 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 93/331 (28%), Positives = 135/331 (40%), Gaps = 58/331 (17%)
Query: 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMKK----GTS 133
V + +G ++ D G Y+D S G A+ +GH+ +V+AA+ + + TS
Sbjct: 11 ATLPVAVAGEGIYLIDATGKRYLD--ASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTS 68
Query: 134 FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIK 186
F E LA+ +++A P +E V FV+ G+EA L+LAR + R I
Sbjct: 69 FFTTEPAE-ALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIA 127
Query: 187 FEGCYHGHADPFLVKAGSGVATLG-LPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245
YHG+ TLG L + + L + VS E G
Sbjct: 128 RRQSYHGN-------------TLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAG 174
Query: 246 E------------------------IAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENG 280
E +AA + E VVG +G + P P + IR + G
Sbjct: 175 ESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYG 234
Query: 281 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA 338
LLI DEVM G R A E GV PDL T+ K +G G P+GA I + +A
Sbjct: 235 VLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADG 294
Query: 339 GPMYQAG-TLSGNPLAMTAGIHTLKRLKEPG 368
+Q G T G+ A A + + + E G
Sbjct: 295 SGFFQHGHTYLGHATACAAALAVQRVIAEDG 325
|
Length = 443 |
| >gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 86/298 (28%), Positives = 131/298 (43%), Gaps = 28/298 (9%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
PIV +G + D +GN Y+D + ++ GH +++ AL + K T +
Sbjct: 23 PIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVT-LTSRAFHS 81
Query: 142 NVLAEMV--ISAVPSIEMVRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCY 191
+ L ++ + +MV +N+G EA ++ AR + + II EG +
Sbjct: 82 DQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNF 141
Query: 192 HGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250
HG + + G P PG+ K P+ D+ AL+ N AA
Sbjct: 142 HGRTMAAVSLSSEEEYKRGFGPMLPGIKK--------IPYGDLEALKAAITPNT---AAF 190
Query: 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 309
++EP+ G +G P FL A R + KE L I DE+ TG R A ++ VTPD+
Sbjct: 191 LVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDM 250
Query: 310 TTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
LGK +GGG P+ RDI+ + P T GNPLA I L+ L+E
Sbjct: 251 YILGKALGGGVFPISCVAANRDILGVFTPGS---HGSTFGGNPLACAVSIAALEVLEE 305
|
Length = 396 |
| >gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 4e-22
Identities = 93/335 (27%), Positives = 137/335 (40%), Gaps = 72/335 (21%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGP--AIIGHADDQVLAALGETMKK--------GTSFGAPC 138
KG +++D +GN+Y D GS G A IGH ++ A+ E ++ TS A
Sbjct: 21 KGVYLYDQNGNKYFD--GSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPA-- 76
Query: 139 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYH 192
E + ++ + + FVNSG+EA +++A R G+ +I+ YH
Sbjct: 77 --EKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYH 134
Query: 193 GHADPFLVKAGSGVATLG-----------------LPDSPGVPKGATY---ETLTAPFND 232
G T+G L D P + Y P
Sbjct: 135 G-------------ITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQ 181
Query: 233 VSA---LENLFENNKGE-IAAIILEPVVGNSG-FIAPKPDFLNAIRRITKENGALLIFDE 287
++ LE E E IAA I EP++G +G + P + I+ I L I DE
Sbjct: 182 LACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADE 241
Query: 288 VMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG 345
VMTG R A E++GV PD+ TLGK +G G P+ A +ME + +G
Sbjct: 242 VMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSG 301
Query: 346 -TLSGNPLAMTAGI--------HTL-KRLKEPGTY 370
TLS NPL+ + H L ++ E G Y
Sbjct: 302 HTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEY 336
|
Length = 447 |
| >gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 1e-21
Identities = 87/354 (24%), Positives = 138/354 (38%), Gaps = 64/354 (18%)
Query: 68 VNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127
V S R+F P VF+ KGS +WD DG EYID+ G GH + ++ AL +
Sbjct: 10 VRSYCRSF------PTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDY 63
Query: 128 MKKGTSFGAPCLLENVLAEMVISAVPSIE-MVRFVNS-----------------GTEACM 169
+ + ++ + ++ E + F GT A
Sbjct: 64 LAD----------DGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVE 113
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV--ATLGLPDSPGVPKGATYET-L 226
L+LAR TGR ++ F +HG L G+ G+P S Y+ L
Sbjct: 114 SALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSR--MPYDGYL 171
Query: 227 TAPFNDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL 283
+ ++ E L E++ + AA+ILE V G G ++L + ++ + + LL
Sbjct: 172 GGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILL 231
Query: 284 IFDEVMTGFRLAYGGAQEYF-----GVTPDLTTLGKIIGG-GLPVGAYGGRRDIMEMVAP 337
I D++ G G +F G+ PD+ L K I G GLP+ + ++ P
Sbjct: 232 IVDDIQAG----CGRTGTFFSFEPAGIEPDIVCLSKSISGYGLPLA--------LTLIKP 279
Query: 338 A----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 387
P GT GN LA L+ +E + E+ Q +D
Sbjct: 280 ELDVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDR 333
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412 |
| >gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 9e-21
Identities = 80/313 (25%), Positives = 143/313 (45%), Gaps = 37/313 (11%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK------GTSFG 135
P+V G+ + D+DGN +ID++ A G++ +++ A+ E + G +
Sbjct: 36 PLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIGYTHS 95
Query: 136 APCLLENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193
+ +AE + P IE V F SG++A +++++ T R I+ F G YHG
Sbjct: 96 ERAIR---VAEKLAEISP-IENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHG 151
Query: 194 HA------DPFLVKAGSGVATLGLPDSPGVPKGATYETL------TAPFNDVSALENLFE 241
F G + L +P+ +P Y P ++ + E
Sbjct: 152 QTLGATSVAAFQSSQKRGFSPL-MPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLE 210
Query: 242 N-------NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 293
N E+AA+ EP+ G++G + P +F ++++ E+G LL+ DEV TG R
Sbjct: 211 NYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGR 270
Query: 294 LAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353
A E+F V PDL GK + G+ + GR+++M++ + + + T + NP+
Sbjct: 271 TGKWFASEWFEVKPDLIIFGKGVASGMGLSGVIGRKELMDLTSGSALL----TPAANPVI 326
Query: 354 MTAGIHTLKRLKE 366
A TL+ ++E
Sbjct: 327 SAAAEATLEIIEE 339
|
Length = 457 |
| >gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 9e-21
Identities = 103/351 (29%), Positives = 160/351 (45%), Gaps = 50/351 (14%)
Query: 74 AFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYV-GSWGPAIIGHADDQVLAALGETMKKGT 132
++S +P+V + +GS+++DI+G +Y+D + G W A+ G ++ +++AA E + K
Sbjct: 64 GWQSTDLEPLVIEKSEGSYVYDINGKKYLDALAGLWCTAL-GGSEPRLVAAATEQLNKLP 122
Query: 133 ---SF----GAPCLLENVLAEMVISAVPSIEM--VRFVNSGTEACMGVLRLARAFT---G 180
SF P L LA+ ++ + +M V F NSG+EA ++L + G
Sbjct: 123 FYHSFWNRTTKPSL---DLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALG 179
Query: 181 RE---RIIKFEGCYHGHADPFLVKAG-SGVATL----GLP-------DSP-----GVPKG 220
R + I YHG L+ A SG+ L LP D P +P G
Sbjct: 180 RPNKKKFIARSKSYHGST---LISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLP-G 235
Query: 221 ATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279
T E + D LENL E IAA I EPV+G G I P + I+ + K+
Sbjct: 236 ETEEEFSTRLAD--NLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKY 293
Query: 280 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 337
L I DEV+ F RL + + + PDL +L K + +P+GA +I +++
Sbjct: 294 DILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHS 353
Query: 338 A----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
G T SG+P++ + LK KE E++NKI GI
Sbjct: 354 QSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGI 404
|
Length = 504 |
| >gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 1e-20
Identities = 90/317 (28%), Positives = 132/317 (41%), Gaps = 56/317 (17%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFG-- 135
+V +G +WD DGN Y+D + ++ GH ++LAA+ E + T +F
Sbjct: 24 DVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRND 83
Query: 136 --APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERII 185
AP E ++A+ V +NSG EA ++ R + G+ II
Sbjct: 84 QLAPLYEE-------LAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEII 136
Query: 186 KFEGCYHGH--------ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237
+HG DP + G G P +PG PF D ALE
Sbjct: 137 VCADNFHGRTLSIVGFSTDP-DARGGFG------PFTPGFR--------VVPFGDAEALE 181
Query: 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 296
N A ++EP+ G +G I P + +R + N LI DE+ TG R
Sbjct: 182 AAITPNT---VAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK 238
Query: 297 GGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG-TLSGNPLAM 354
A+E+ G+ D+T +GK + GG PV A +++ ++ P Q G T GNPLA
Sbjct: 239 LLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPG----QHGSTFGGNPLAC 294
Query: 355 TAGIHTLKRLKEPGTYE 371
LK L E G E
Sbjct: 295 AVARAALKVLTEEGMIE 311
|
Length = 401 |
| >gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 4e-20
Identities = 87/305 (28%), Positives = 129/305 (42%), Gaps = 37/305 (12%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK---GTSFGAPC 138
PI F G + D G Y+D + +GHA +V+AA + T +
Sbjct: 607 PIKFVRGWGVWLIDNRGRAYLDCFNN--VCHVGHAHPRVVAAAARQAARLNTNTRYLHDA 664
Query: 139 LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH--- 194
++ AE + + +P + + FVNSG+EA LRLARA TG+ I + YHG
Sbjct: 665 IVA--YAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTE 722
Query: 195 -----ADPFLVKAGSG----VATLGLPDS-------PGVPKGATYETLTAPFNDVSALEN 238
F K G G V +PDS P G + A +
Sbjct: 723 LIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAE-----QIAA 777
Query: 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AY 296
+ +G A I E + +G I +L + + + G + I DEV GF R+ ++
Sbjct: 778 MAAKGRG-PAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSH 836
Query: 297 GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 356
A E GV PD+ T+GK IG G P+GA R+I + + M T GNP++
Sbjct: 837 WWAFETQGVVPDIVTMGKPIGNGHPMGAVVTTREIAD--SFDNGMEYFNTFGGNPVSCAI 894
Query: 357 GIHTL 361
G+ L
Sbjct: 895 GLAVL 899
|
Length = 1013 |
| >gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 4e-20
Identities = 78/273 (28%), Positives = 122/273 (44%), Gaps = 37/273 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK---GTSFGAPC 138
P++ + +G ++D++GNEY D V S + GH ++ A+ E + K T G
Sbjct: 39 PLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLAN 98
Query: 139 LLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCY 191
+ +LAE +I VP ++ V + +SG A +++A + ++R + + Y
Sbjct: 99 VPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAY 158
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV-----------------S 234
HG + A S V + L V +E + P+
Sbjct: 159 HGDT----IGAVS-VGAIDLFHQ--VYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLE 211
Query: 235 ALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 292
LE L + EIAAII+EP+V G G I +L +R + + L I DEV TGF
Sbjct: 212 ELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFG 271
Query: 293 RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGA 324
R A E+ VTPD+ T GK + GG LP+
Sbjct: 272 RTGKMFACEHENVTPDIMTAGKGLTGGYLPIAI 304
|
Length = 460 |
| >gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 4e-20
Identities = 90/313 (28%), Positives = 135/313 (43%), Gaps = 34/313 (10%)
Query: 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENV-LAEMVISAVP 153
DG ID + SW A+ G+ ++ AA + K + FG V LA+ ++ +P
Sbjct: 42 DGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILP 101
Query: 154 -SIEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYHG---HA----DPFL 199
S+ + F +SG+ A +++A + R + YHG HA DP
Sbjct: 102 PSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDP-- 159
Query: 200 VKAGSGVATLGLP-----DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254
V G+ LP P + G + + L++L E EIAA+ILEP
Sbjct: 160 VTGMHGLFNHSLPVQYFLPQPSIKFGEEWND-----EAIEPLQDLLEQKGDEIAALILEP 214
Query: 255 VV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTL 312
VV G G P +L R + + G LLIFDE+ TGF R A E+ GV PD+ +
Sbjct: 215 VVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCI 274
Query: 313 GKIIGGG-LPVGAYGGRRDIMEMV--APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369
GK + GG L + A I + + A T NPLA +++ L E
Sbjct: 275 GKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPW 334
Query: 370 YEYLNKITGELTQ 382
+ + +I +L Q
Sbjct: 335 QQNIQRIEAQLKQ 347
|
Length = 429 |
| >gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 1e-19
Identities = 91/323 (28%), Positives = 136/323 (42%), Gaps = 59/323 (18%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA-------LGETMKKGTSFGAPCLLE 141
+G+ + DG Y+D V SW + GHA+ ++ AA L + M G + P +
Sbjct: 54 EGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTH-EPAVQ- 111
Query: 142 NVLAEMVISAVPS------IEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEG 189
LAE +++ P + V + ++G+ L++A R R R I E
Sbjct: 112 --LAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALEN 169
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSP---GVPKGATYETLTAPFND-------------- 232
YHG + L + D P V E+L AP D
Sbjct: 170 GYHGET----------IGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYA 219
Query: 233 ---VSALENLFENNKGEIAAIILEPVVGNSGFI-APKPDFLNAIRRITKENGALLIFDEV 288
AL+ LFE + GEI A+ILEP + +G + P +L R + +GA LI DE+
Sbjct: 220 LQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEI 279
Query: 289 MTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMV---APAGPMYQ 343
TGF R A E GV PDL L K + GG LP+ A + + + +
Sbjct: 280 ATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLH 339
Query: 344 AGTLSGNPLAMTAGIHTLKRLKE 366
+ + +GNPLA A + TL +
Sbjct: 340 SHSYTGNPLACAAALATLDIFAD 362
|
Length = 472 |
| >gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 4e-19
Identities = 79/312 (25%), Positives = 130/312 (41%), Gaps = 52/312 (16%)
Query: 80 GQPIVFDSVKGSHMWDIDGNEYIDYV-GSWGPAIIGHADDQVLAALGETMKKGTSFGAPC 138
+V +G+ + DI GN Y+D + G W +G+ ++ A E +K + F
Sbjct: 28 NATMVVAKAEGAWVTDIQGNRYLDGMSGLWC-VNVGYGRKELAEAAYEQLKTLSYF---- 82
Query: 139 LLENVLAEMVISAVPSIE-------------MVRFVNSGTEACMGVLRLARAF------T 179
+ S P+I+ ++ F NSG+EA ++AR +
Sbjct: 83 -------PLTQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEP 135
Query: 180 GRERIIKFEGCYHGHADPFLVKAG------------SGVATLGLPDSPGVPKGATYETLT 227
R + I YHG++ L G G + PD +P + +
Sbjct: 136 HRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYD 195
Query: 228 APFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286
V ++ + E IAA+I+EP++ G + P D++ A++ I +++GALLI D
Sbjct: 196 LE--CVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISD 253
Query: 287 EVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGP---M 341
EV+ GF R +GV PD+ T+ K I LP+ A +++I E G
Sbjct: 254 EVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHF 313
Query: 342 YQAGTLSGNPLA 353
T GNP A
Sbjct: 314 RHVNTFGGNPAA 325
|
Length = 451 |
| >gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-18
Identities = 88/315 (27%), Positives = 126/315 (40%), Gaps = 38/315 (12%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK--------KGTS 133
PI+ G +++DIDG + +D VG +GH ++V A+ + GT+
Sbjct: 25 PIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTT 84
Query: 134 FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKF 187
L L +M A + V F + G+++ L+LAR + R + I
Sbjct: 85 HPRAIELSYELIDMF--APEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISL 142
Query: 188 EGCYHG-HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND----------VSAL 236
+ YHG H V + P PG T PF + L
Sbjct: 143 KQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLL 202
Query: 237 ENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
E IAA I EPV G G I P +F +R + +G LLI DEV+TGF R
Sbjct: 203 EREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRT 262
Query: 295 AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGA--YGGRRDIMEMVA----PAGPMYQAGTL 347
+GV PD+ L K I G +P+GA R I + G + T
Sbjct: 263 GSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNAR--IADAFEANADFGGAIMHGYTY 320
Query: 348 SGNPLAMTAGIHTLK 362
SG+P+A A + TL
Sbjct: 321 SGHPVACAAALATLD 335
|
Length = 449 |
| >gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 2e-18
Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 46/310 (14%)
Query: 92 HMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK---GTSFGAPCLLENVLAEMV 148
H++D+ G Y+D V + ++GH ++ AA + F + E +E +
Sbjct: 578 HLFDMAGRSYLDMVNN--VTVLGHGHPRLAAAAARQWSLLNTNSRFHYAAVAE--FSERL 633
Query: 149 ISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVA 207
+ P ++ V VNSG+EA +RLA A +GR ++ YHG A V+
Sbjct: 634 AALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWT-----VATDAVS 688
Query: 208 TL---------GLPD------SPGVPKGATYETLTAP--FNDVSA-LENLFENNKGEIAA 249
T PD SP +G +A DV A LE L + +G +A
Sbjct: 689 TSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRG-LAG 747
Query: 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF------ 303
I EPV GN+G IA P +L + + G + I DEV G YG YF
Sbjct: 748 FICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVG----YGRLGHYFWGFEQQ 803
Query: 304 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY-QAGTLSGNPLAMTAGIHTLK 362
GV PD+ T+ K +G G P+GA RR+I E + G + G G+P++ G+ L
Sbjct: 804 GVVPDIITMAKGMGNGHPLGAVITRREIAEALEAEGYFFSSTG---GSPVSCRIGMAVLD 860
Query: 363 RLKEPGTYEY 372
L+E E
Sbjct: 861 VLREEKLQEN 870
|
Length = 972 |
| >gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 4e-18
Identities = 77/314 (24%), Positives = 135/314 (42%), Gaps = 42/314 (13%)
Query: 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL 139
G ++ ++ +G ++ D DG Y+D +G +G+ +++ A+ + ++ +
Sbjct: 33 GSLVIVEA-EGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGD 91
Query: 140 LENV----LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGR------ERIIKFE 188
+ N LA + P + V G+ A LR + + II
Sbjct: 92 MTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRG 151
Query: 189 GCYHGHADPFLVKAGSGVAT--------------LGLPDSPGVPKGATYETLTAPFND-- 232
YHG +L + +G A L P+ P G + A F D
Sbjct: 152 DAYHGST--YLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMS----EAAFCDFL 205
Query: 233 VSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
V E+ + + IAA I EP++G+ G I P P + +R I + L I DEV+TG
Sbjct: 206 VDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTG 265
Query: 292 F-RL-AYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVA-PAGP--MYQAG 345
F RL + ++ FG+ PD+ T K + G P+GA ++++++ P ++ G
Sbjct: 266 FGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHG 325
Query: 346 -TLSGNPLAMTAGI 358
T SG+P+A A +
Sbjct: 326 FTYSGHPVACAAAL 339
|
Length = 466 |
| >gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 6e-18
Identities = 79/315 (25%), Positives = 129/315 (40%), Gaps = 38/315 (12%)
Query: 84 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 143
V S +G ++ D+DG +Y+D+ G+ +G+ V+ + E M K F +P N
Sbjct: 57 VLASAEGIYIEDVDGKKYMDFHGN-NVHQLGYGHPHVIEKVKEQMAK-LPF-SPRRFTNE 113
Query: 144 ----LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 198
AE + + V F GT A L+LAR TG +++ +HG +
Sbjct: 114 TAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDA 173
Query: 199 LVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSA--------LENLFENNKGEIAA 249
+ G G+ P GV + + F D LE + E +G I A
Sbjct: 174 ISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK-EGGIGA 232
Query: 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 308
I E V N+ P + +R I ++ LLI DE+ G R + +G+ PD
Sbjct: 233 FIAEAV-RNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPD 291
Query: 309 LTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAGTLS-------GNPLAMTAGIHT 360
+ +GK +GGGL P+ A M+ A +S +PL A + T
Sbjct: 292 ILCIGKGLGGGLVPIAA---------MITKDK-YNTAAQISLGHYTHEKSPLGCAAALAT 341
Query: 361 LKRLKEPGTYEYLNK 375
++ +++ G E +
Sbjct: 342 IEVIEQEGLLEKVKA 356
|
Length = 459 |
| >gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 7e-18
Identities = 88/338 (26%), Positives = 141/338 (41%), Gaps = 44/338 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA----- 136
P V +G H+WD DG Y+D + +G+ + AA M++ +
Sbjct: 37 PRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTT 96
Query: 137 -PCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFE 188
P ++E L+E++ S +P + NSG+EA ++R R + ++ +I
Sbjct: 97 HPAVIE--LSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRW 154
Query: 189 GCYHGHADPFLVKAGSGVATLG-----------LPDSPGVPKGATY----ETLTAPFNDV 233
YHG + LG +PD + + Y E A F
Sbjct: 155 NGYHG--------STLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRR 206
Query: 234 SAL---ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
+AL E + E +A + EP G G I P + I+RI ++ LL DEV+
Sbjct: 207 AALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIG 266
Query: 291 GF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG-TL 347
GF R A E+FG PD ++ K + G +P+G + I E + G ++ G T
Sbjct: 267 GFGRTGEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTY 326
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGII 385
SG+P+A I LK L++ G + TG Q +
Sbjct: 327 SGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCL 364
|
Length = 460 |
| >gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 1e-17
Identities = 87/299 (29%), Positives = 135/299 (45%), Gaps = 39/299 (13%)
Query: 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG----APCLLENVLAEMVIS 150
DG +D + SW AI G+ Q+ AA+ + + FG P + + ++V
Sbjct: 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAI--ELCRKLVAM 98
Query: 151 AVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSG 205
+E V +SG+ A +++A + R+R + YHG D F G
Sbjct: 99 TPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHG--DTF------G 150
Query: 206 VATLGLPDSP--GVPKGATYETLTAP-----F------NDVSALENLFENNKGEIAAIIL 252
++ PD+ + KG E L AP F D++ L ++ EIAA+IL
Sbjct: 151 AMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVIL 210
Query: 253 EPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310
EP+V G G P++L +R++ G LLI DE+ TGF R A E+ G+ PD+
Sbjct: 211 EPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDIL 270
Query: 311 TLGKIIGGG-LPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
LGK + GG + + A R++ E ++ AG T GNPLA +L L+
Sbjct: 271 CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLES 329
|
Length = 428 |
| >gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 4e-17
Identities = 89/320 (27%), Positives = 137/320 (42%), Gaps = 55/320 (17%)
Query: 89 KGSHMWDIDGNEYID-YVGSWGPAIIGHADDQVLAALGETMKK--------GTSFGAPCL 139
+G ++WD +GN+ +D G W + G+ ++ A M++ T+
Sbjct: 40 EGVYLWDSEGNKILDGMAGLWCVNV-GYGRKELADAAARQMRELPYYNTFFKTTHPPAIE 98
Query: 140 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHG 193
L LAE+ A P V F NSG+EA VLR+ R + ++ II + YHG
Sbjct: 99 LAAKLAEV---APPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHG 155
Query: 194 HADPFLVKAGS----------------GVATLGLPDSPGVPKGATYETLTAPFNDVSA-- 235
V S G+ + P G T E F +A
Sbjct: 156 ST----VAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEE----FGLAAARQ 207
Query: 236 LE----NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
LE L +N +AA I EP+ G G I P + I+RI ++ LL+ DEV+ G
Sbjct: 208 LEAKILELGADN---VAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICG 264
Query: 292 F-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME-MVAPAGPMYQAGTLS 348
F R ++FG+ PDL T+ K + G +P+GA G + E ++ G T S
Sbjct: 265 FGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYS 324
Query: 349 GNPLAMTAGIHTLKRLKEPG 368
G+P+A + L+ L++ G
Sbjct: 325 GHPVAAAVALANLRILRDEG 344
|
Length = 456 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 9e-16
Identities = 78/314 (24%), Positives = 117/314 (37%), Gaps = 37/314 (11%)
Query: 79 GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-----S 133
V +G ++WD G Y+D + +GH ++ A + S
Sbjct: 32 DAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWS 91
Query: 134 FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIK 186
+ P +E LAE + + P + V F G+EA +LA+ + G+ ++I
Sbjct: 92 YAHPPAIE--LAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVIS 149
Query: 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVP---------------KGATYETLTAPFN 231
YHG A +G+ P P VP G E
Sbjct: 150 RAIAYHG--TTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAA 207
Query: 232 DVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
D +E E + +AA+ LEPV G P P + +R I LL+ DEV+
Sbjct: 208 D--RIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVIC 265
Query: 291 GF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG-TL 347
F RL E FG PD+ T K I G P+GA + E M+ G T
Sbjct: 266 AFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTF 325
Query: 348 SGNPLAMTAGIHTL 361
G+P++ + L
Sbjct: 326 GGHPVSAAVALANL 339
|
Length = 460 |
| >gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 1e-15
Identities = 80/332 (24%), Positives = 131/332 (39%), Gaps = 79/332 (23%)
Query: 89 KGSHMW--DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV--- 143
+G +W D +G Y+D V SW + GHA+ ++ + + + + LE+V
Sbjct: 35 RGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQ---------LEHVILA 85
Query: 144 ---------LAEMVISAVPS-IEMVRFVNSGTEACMGVLRLA------RAFTGRERIIKF 187
L+E ++ P + + ++G+ A L+++ R ++R +
Sbjct: 86 GFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTL 145
Query: 188 EGCYHGHA----------------DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231
YHG P L+ + PD P+G ++E +
Sbjct: 146 TNSYHGETLAAMSVGDVALFTETYKPLLLD----TIKVPSPDCYLRPEGMSWEEHSR--R 199
Query: 232 DVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
+ +E + EIAA+I+EP++ G G P +L +R G LI DE+
Sbjct: 200 MFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAV 259
Query: 291 GF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQA---- 344
GF R A E G+ PD L K + GG LP+ A V +YQA
Sbjct: 260 GFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAA----------VLTTDTVYQAFYDD 309
Query: 345 -GTL---------SGNPLAMTAGIHTLKRLKE 366
TL +GNPLA A + TL ++
Sbjct: 310 YPTLRAFLHSHSYTGNPLACAAALATLDIFEQ 341
|
Length = 466 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-14
Identities = 83/318 (26%), Positives = 124/318 (38%), Gaps = 60/318 (18%)
Query: 88 VKGSHMW--DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLA 145
+G W D DG Y+D + SW + GHA+ ++ AAL + + LE+ +
Sbjct: 41 ARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLD---------TLEHAML 91
Query: 146 EMVISAVPSIEMVR--------------FVNSGTEACMGVLRLA------RAFTGRERII 185
P+IE+ F + G A L+++ R + +
Sbjct: 92 AGCTHE-PAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFV 150
Query: 186 KFEGCYHGHA----------------DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
YHG DP L++ VA+ PD+ G G T + A
Sbjct: 151 CLANGYHGETIGALGVTDVALFKDAYDP-LIRHAHVVAS---PDARGARPGETAADVAA- 205
Query: 230 FNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288
++ + LF G+IAA+I+EP+V +G P +L +R + G LI DE+
Sbjct: 206 -RALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEI 264
Query: 289 MTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMV---APAGPMYQ 343
G R A E GV PD L K I GG LP+ R I
Sbjct: 265 AVGCGRTGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLH 324
Query: 344 AGTLSGNPLAMTAGIHTL 361
+ + +GNPLA A + TL
Sbjct: 325 SHSYTGNPLACRAALATL 342
|
Length = 453 |
| >gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 3e-14
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 30/176 (17%)
Query: 164 GTEACMGVLRLARAFTGRERIIKFEGCYHGH--------ADPFLVKAGSGVATLGLPDSP 215
GT A L+LAR TGR I+ F +HG + + G+GV L +
Sbjct: 112 GTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHK-RQGAGVP---LNNVT 167
Query: 216 GVPKGATYETLTAP-FNDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNA 271
+P Y+ + ++ LE L E++ + AA+I+E V G G ++L
Sbjct: 168 RMP----YDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQR 223
Query: 272 IRRITKENGALLIFDEVMTGFRLAYGGAQEYF-----GVTPDLTTLGKIIGG-GLP 321
+ ++ +++ LLI D++ G G +F G+TPD+ TL K I G GLP
Sbjct: 224 LAKLCRKHDILLIVDDIQAG----CGRTGTFFSFERAGITPDIVTLSKSISGYGLP 275
|
Length = 425 |
| >gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 8e-14
Identities = 82/340 (24%), Positives = 143/340 (42%), Gaps = 41/340 (12%)
Query: 75 FKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALG---ETMKKG 131
+ + G + + S G + DG+ ID + SW A GH ++ AA +TM
Sbjct: 16 YAAPGVRNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSH- 74
Query: 132 TSFGAPCLLENV-LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT------GRER 183
FG + L +++ ++ V + +SG+ + +++A ++ R R
Sbjct: 75 VMFGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTR 134
Query: 184 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG----VPKGATYETLTAPF--------N 231
++ + YHG D F A + + D G + KG E + AP
Sbjct: 135 LLTWRSGYHG--DTF--------AAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQ 184
Query: 232 DVSALENLFENNKGE-IAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289
++S E E +AAII+EP+V G G + +R + ++ LLI DE+
Sbjct: 185 EISEYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIA 244
Query: 290 TGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQA 344
TGF R A GVTPD+ +GK + GG + A + ++++ G +
Sbjct: 245 TGFGRTGELFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHG 304
Query: 345 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
T NPLA +L+ ++ + + +I EL G+
Sbjct: 305 PTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELIAGL 344
|
Length = 422 |
| >gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 9e-14
Identities = 93/343 (27%), Positives = 143/343 (41%), Gaps = 52/343 (15%)
Query: 82 PIVFDSVKGSHMWDIDGNEYID-YVGSWGPAIIGHADDQVLAALGETMKK---GT---SF 134
V S KG+ + D G++ +D + G W +G+ + ++ A E M++ T F
Sbjct: 29 VTVLASAKGATLTDASGHQLLDAFAGLWC-VNVGYGQESIVEAAAEQMRELPYATGYFHF 87
Query: 135 GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRL------ARAFTGRERIIKFE 188
G+ + + A++ A S+ V F G++A +R A +++ I E
Sbjct: 88 GSEPAIR-LAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLE 146
Query: 189 GCYHGHADPFLVKAGSGVATL-------GLP-------DSPGV---PKGATYETLTAPFN 231
YHG + G+G+ L LP SP P G + + A
Sbjct: 147 RGYHGSS-----SVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAA-- 199
Query: 232 DVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
V+AL + +AA EP+ G+ G I P +L A+R +E G L + DEV+T
Sbjct: 200 SVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVIT 259
Query: 291 GF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGA-------YGGRRDIMEMVAPAGPM 341
GF R A E GV PDL T+ K + G +P+GA Y G D AP G
Sbjct: 260 GFGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHG 319
Query: 342 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
Y T S +P++ G+ L+ E G K G+
Sbjct: 320 Y---TYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGL 359
|
Length = 459 |
| >gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 95/371 (25%), Positives = 150/371 (40%), Gaps = 82/371 (22%)
Query: 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYID-YVGS 107
L S EA ++A L P + R + G P+V + +G +++D G YI+ G
Sbjct: 3 MLPNSLEARDIAYHLHP---YTNARRHEEEG--PLVIERGEGIYVYDDAGKRYIEGMAGL 57
Query: 108 WGPAIIGHADDQVLAALGETMKKGT---SFG----APCLLENVLAEMVISAVPSIEM--V 158
W A+ G ++ +++ A MKK +F P + LAE +++ P + M V
Sbjct: 58 WSVAL-GFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVID---LAEKLVAMAP-VPMSKV 112
Query: 159 RFVNSGTEACMGVLRL------ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212
F NSG+EA V++L A +++II + YHG V S T GLP
Sbjct: 113 FFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHG------VTIASASLT-GLP 165
Query: 213 DS--------PGV------------PKGATYETLTAPFNDVSALENLFENNKGE-IAAII 251
++ + G + E + LE L + IAA I
Sbjct: 166 NNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLAN--ELEALILAEGPDTIAAFI 223
Query: 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310
EPV+G G I P + I+ + ++ LL+ DEV+ GF R E FG+ PD+
Sbjct: 224 GEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDIL 283
Query: 311 TLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQA--------GTL------SGNPLAMT 355
+ K + P+ A V +Y GT SG+P+A
Sbjct: 284 VMSKQLSSSYQPLSA----------VLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAA 333
Query: 356 AGIHTLKRLKE 366
+ L ++E
Sbjct: 334 VALENLAIIEE 344
|
Length = 460 |
| >gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 9e-12
Identities = 78/318 (24%), Positives = 119/318 (37%), Gaps = 87/318 (27%)
Query: 59 VAKELMPGGVNSPVRAFKSVGGQPIVFDSVK--GSHMWD-IDGNEYIDYVGSWGPAIIGH 115
A+ + P V+ + V G +V D + GS++ D G Y+D + + +G
Sbjct: 2 AAQRVAPDDVHEVLARHILVDGFDLVLDLERSQGSYLVDARTGRRYLDMFTFFASSALGM 61
Query: 116 ------ADDQVLAALGET-MKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNS----- 163
D + A LG + K ++ S V ++EM RFV++
Sbjct: 62 NHPALADDPEFRAELGRAALNKPSN----------------SDVYTVEMARFVDTFARVL 105
Query: 164 -------------GTEACMGVLRLA-------RAFTGRE-----RIIKFEGCYHGHA--- 195
G A L++A G + +++ G +HG +
Sbjct: 106 GDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYT 165
Query: 196 ------DPFLVKAGSGVATLGLP--DSPGVPKGATYETLTAPFNDVSALENL-------- 239
DP P D+P + E L +V ALE
Sbjct: 166 LSLTNTDPRKTAR---FPKFDWPRIDNPKLRFPLPGEDL----EEVEALEAEALAQARAA 218
Query: 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG- 298
FE + +IA I EP+ G G +P+F A+R + E+ ALLIFDEV TG L G
Sbjct: 219 FERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLT--GT 276
Query: 299 --AQEYFGVTPDLTTLGK 314
A + GV PD+ GK
Sbjct: 277 AWAYQQLGVRPDIVAFGK 294
|
Length = 443 |
| >gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 88/329 (26%), Positives = 133/329 (40%), Gaps = 69/329 (20%)
Query: 89 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF------GAPCLLEN 142
+G + D G YID +G+ +V A+ E K+ + G +
Sbjct: 40 EGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGHGTEASIT- 98
Query: 143 VLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFT---GR---ERIIKFEGCYHGHA 195
L++ +I P+ + V + SG++A ++L + GR ++II YHG
Sbjct: 99 -LSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHG-- 155
Query: 196 DPFLVKAGSGVAT---LGLP------DSP--------------GVPKGATYETLTAPFND 232
SGV T GL D P G + E +A
Sbjct: 156 --------SGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSA--YC 205
Query: 233 VSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291
LE L + IAA I EPV+G G + P + AI+ + K+ LLI DEV+TG
Sbjct: 206 ADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTG 265
Query: 292 F-RL-AYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYG-------GRR--DIMEMVAPA-G 339
F RL + G+ Y G+ PDL T+ K GL AY G + D++E + G
Sbjct: 266 FGRLGSMFGSDHY-GIEPDLITVAK----GL-TSAYAPLSGSIVGEKVWDVLEQGSDEHG 319
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
+ T SG+P+ A + L L+
Sbjct: 320 AIGHGWTYSGHPICAAAALANLDILEREN 348
|
Length = 461 |
| >gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 73/285 (25%), Positives = 106/285 (37%), Gaps = 59/285 (20%)
Query: 78 VGGQPIVFD--SVKGSHMWD-IDGNEYIDYVGSWGPAIIGH------ADDQVLAALGE-T 127
G +V D +GS + D DG Y+D + +G D A LG
Sbjct: 14 TDGFDLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAA 73
Query: 128 MKKGTSFGAPCLLENVLAEMV-----ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 182
+ K ++ + +A V + P++ + F+ G A L+ A + R
Sbjct: 74 VNKPSN---SDVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRH 130
Query: 183 ------------RIIKFEGCYHG---------HADPFLVKAGSGVATLGLP--DSPGVPK 219
+++ +HG + DP T P D P +
Sbjct: 131 NQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDP--------RKTARFPKFDWPRIDN 182
Query: 220 GATYETLTAPFND-VSALEN--------LFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270
L AP D V ALE F +IA I EP+ G G +P+FL
Sbjct: 183 PKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLR 242
Query: 271 AIRRITKENGALLIFDEVMTGFRL-AYGGAQEYFGVTPDLTTLGK 314
A+R + E+ ALLIFDEV TG L A + GV PD+ GK
Sbjct: 243 AMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGK 287
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431 |
| >gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 57/201 (28%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 196 DPFLVKAGSGVATLGLP---DSPGVPKGATYETLTAPFN---DVSALENLF--------- 240
DP V +G + LP S + T+E+ F+ D + L +
Sbjct: 515 DPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLD 574
Query: 241 ----ENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
G IAA+I+EPV+ G G + P F A+ ++ + +IFDEV TG RL
Sbjct: 575 EYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRL 634
Query: 295 AYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAGTLSGN--- 350
A E G PD+ K++ GGL P+ A ++ E A GP L G+
Sbjct: 635 GVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFE--AFRGPSKLDALLHGHSYT 692
Query: 351 --PLAMTAGIHTLKRLKEPGT 369
P+ A L+ K+P T
Sbjct: 693 AHPMGCAAAAKALQWYKDPST 713
|
Length = 817 |
| >gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 73/349 (20%), Positives = 121/349 (34%), Gaps = 72/349 (20%)
Query: 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGLPDSP 215
R ++ ++ + F G+E + F Y A GV +TL
Sbjct: 37 GSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYA---------ANDGVLSTLAGKGDL 87
Query: 216 -------------GVPKGATYETLTAPFNDVSALENLFENNKGEIAA--IILEPVVGNSG 260
G+ + + + ND+ LE L + I+ E V G
Sbjct: 88 IISDSLNHASIIDGI-RLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDG 146
Query: 261 FIAPKPDFLNAIRRITKENGALLIFDEVM-TGFRLAYGGAQEYFGVTPDLT-----TLGK 314
IAP L + + K+ GA+L DE G +G E FG D TLGK
Sbjct: 147 DIAP----LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGK 202
Query: 315 IIGGGLPVGAY-GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-EPGTYEY 372
G VG Y G +++++ + + T S P A + L+ L+ P E
Sbjct: 203 AFGA---VGGYIAGSKELIDYLRSYARGFIFST-SLPPAVAAAALAALEVLQGGPERRER 258
Query: 373 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN--FEDAKKSETTKFARF 430
L + L +G+ + G G + + +D K+ F
Sbjct: 259 LQENVRYLRRGLKELGFPVGGSPS--------------HIIPPLIGDDPAKAV-----AF 299
Query: 431 YRGMLEEGVYFAPSQFEAG--------FT-SLAHSSDDIQHTITAAEKV 470
+LE G+Y ++ + S AH+ +DI + A ++V
Sbjct: 300 SDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349 |
| >gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 19/147 (12%)
Query: 231 NDVSALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
ND+ LE L E N I+ E V G IAP L + + ++ GALL DE
Sbjct: 153 NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDE 208
Query: 288 V-MTGFRLAYG-GAQEYFGVTPD-----LTTLGKIIGGGLPVGAY-GGRRDIMEMVAPAG 339
G G G E+FG+ P+ + TLGK +G G Y G +++ +
Sbjct: 209 AHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGS---SGGYIAGSAALIDYLRNRA 265
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKE 366
+ T + P A + L+ L+E
Sbjct: 266 RPFIFST-ALPPAVAAAALAALRILEE 291
|
Length = 388 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-06
Identities = 37/152 (24%), Positives = 49/152 (32%), Gaps = 20/152 (13%)
Query: 153 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212
P + FV SGT A L + +I + AG
Sbjct: 15 PGNDKAVFVPSGTGANEAALLALL--GPGDEVIVDANGHGSRYWVAAELAG--------A 64
Query: 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272
VP DV+ LE L K +A I++ P + G + P L I
Sbjct: 65 KPVPVPVDDAGY----GGLDVAILEEL--KAKPNVALIVITPNTTSGGVLVP----LKEI 114
Query: 273 RRITKENGALLIFDEVMTGFRLAYGGAQEYFG 304
R+I KE G LL+ D G G G
Sbjct: 115 RKIAKEYGILLLVDAASAGGASPAPGVLIPEG 146
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 62/242 (25%)
Query: 260 GFIAPKPDFLNAIRRITKENGALLIFDEV-MTGFRLAYG-GAQEYFGVTPDLT----TLG 313
G IAP L+ I + + AL++ DE TGF G G+ E GV + TLG
Sbjct: 184 GVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLG 239
Query: 314 KIIGGGLPVGAY-GGRRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT-Y 370
K +GG G + R++++E++ + P + +L P + A I L+ L+
Sbjct: 240 KALGGAS--GGFTTARKEVVELLRQRSRPYLFSNSLP--PAVVGASIKVLEMLEASNELR 295
Query: 371 EYLNKITGELTQGIIDAG---KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 427
+ L T + + AG K A H I PV + DA ++
Sbjct: 296 DRLWANTRYFRERMEAAGFDIKPADHPII---------------PVMLY-DAVLAQ---- 335
Query: 428 ARFYRGMLEEGVYFAPSQFEAGF---------------TSLAHSSDDIQHTITAAEKVLR 472
RF R +LEEG+Y GF S AH+ + + + A ++ R
Sbjct: 336 -RFARRLLEEGIYV------TGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGR 388
Query: 473 QI 474
++
Sbjct: 389 EL 390
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function [Energy metabolism, Amino acids and amines]. Length = 393 |
| >gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296
E+L + +AAII+EP+ G PDF +R ITK++ I DEV TG
Sbjct: 242 EDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTG----- 296
Query: 297 GG------AQEYFGVT--PDLTTLGK 314
G A E++ + PD+ T K
Sbjct: 297 VGATGKFWAHEHWNLDDPPDMVTFSK 322
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464 |
| >gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 9e-06
Identities = 67/243 (27%), Positives = 96/243 (39%), Gaps = 66/243 (27%)
Query: 260 GFIAPKPDFLNAIRRITKENGALLIFDEV-MTGFRLAYG-GAQEYFGVTP--DLT--TLG 313
G IAP L I + + AL++ D+ GF G G E+FGV D+ TLG
Sbjct: 188 GDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLG 243
Query: 314 KIIGGGLPVGAY-GGRRDIMEMVAPAGPMYQAGTLSGNPLA---MTAGIHTLKRLKEPGT 369
K +GG G Y GR+++++ + Y L N LA + A I L+ L+E
Sbjct: 244 KALGGA--SGGYTAGRKEVIDWLRQRSRPY----LFSNSLAPAIVAASIKVLELLEESDE 297
Query: 370 Y-EYLNKITGELTQGIIDAG---KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425
+ L + +G+ AG H I I M G DAK +
Sbjct: 298 LRDRLWENARYFREGMTAAGFTLGPGEHPI----IPVMLG------------DAKLA--- 338
Query: 426 KFARFYRGMLEEGVYFAPSQFEAGFT---------------SLAHSSDDIQHTITAAEKV 470
F +LEEGVY GF+ S AH+ + + I A EKV
Sbjct: 339 --QEFADRLLEEGVYVI------GFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKV 390
Query: 471 LRQ 473
++
Sbjct: 391 GKE 393
|
Length = 397 |
| >gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 229 PFNDVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
NDV LE L E N+GE +I+ + V G IAP L + + + GA L+ D+
Sbjct: 128 RHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDD 183
Query: 288 VM-TGFRLAYG-GAQEYFGVTPD-----LTTLGKIIGGGLPVGAY 325
TG G G E+FG+ P+ + TL K +G GAY
Sbjct: 184 AHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS---YGAY 225
|
7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 360 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 46/253 (18%), Positives = 77/253 (30%), Gaps = 40/253 (15%)
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
D ALE + ++ +G +A + L + + KE+ LL+ DE
Sbjct: 127 LDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEE-LEKLLDLAKEHNILLLVDEAYA 185
Query: 291 GFRLAYGGAQEY---FGVTPD-----LTTLGKIIG-GGLPVGAYGGRRDIME-MVAPAGP 340
GF +G + + + K G G VG G ++ + A P
Sbjct: 186 GF--VFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARP 243
Query: 341 MYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399
Y + A A L E + + + L G+ AG
Sbjct: 244 FY--SSTHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAAGLS-----VLPS 296
Query: 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVY-FAPSQFEAG----FTSL 453
+G F T + +LEE GVY S F T
Sbjct: 297 QAGF--FLLTGLDPEAALA-----------LAQVLLEEVGVYVTPGSSFGGPGWLRITVA 343
Query: 454 AHSSDDIQHTITA 466
+ ++++ + A
Sbjct: 344 GGTEEELEELLEA 356
|
Length = 357 |
| >gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 68 VNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAAL 124
V S R+F P+VFD KGS ++D DG EYID+ G GH + + AL
Sbjct: 14 VRSYCRSF------PVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQAL 64
|
Length = 425 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 474 | |||
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 100.0 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 100.0 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 100.0 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 100.0 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK07046 | 453 | aminotransferase; Validated | 100.0 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 100.0 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 100.0 | |
| PRK07678 | 451 | aminotransferase; Validated | 100.0 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 100.0 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 100.0 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 100.0 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 100.0 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 100.0 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 100.0 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 100.0 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 100.0 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 100.0 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 100.0 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 100.0 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 100.0 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 100.0 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 100.0 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 100.0 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 100.0 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06105 | 460 | aminotransferase; Provisional | 100.0 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 100.0 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 100.0 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 100.0 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 100.0 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 100.0 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 100.0 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 100.0 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 100.0 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 100.0 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 100.0 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 100.0 | |
| PLN00144 | 382 | acetylornithine transaminase | 100.0 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 100.0 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 100.0 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 100.0 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 100.0 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 100.0 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 100.0 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 100.0 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 100.0 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 100.0 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 100.0 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 100.0 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 100.0 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 100.0 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 100.0 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 100.0 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 100.0 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 100.0 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 100.0 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 100.0 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 100.0 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 100.0 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 100.0 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 100.0 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 100.0 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 100.0 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 100.0 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 100.0 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 100.0 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 100.0 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 100.0 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 100.0 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.98 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.98 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.97 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.97 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.97 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.96 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.96 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.96 | |
| PRK07324 | 373 | transaminase; Validated | 99.96 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.96 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.96 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.96 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.95 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.95 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.95 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.95 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.95 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.95 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.95 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.95 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.95 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.95 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.95 | |
| PLN02187 | 462 | rooty/superroot1 | 99.95 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.95 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.95 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.95 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.95 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.95 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.95 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.94 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.94 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.94 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.94 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.94 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.94 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.94 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.94 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.94 | |
| PLN02656 | 409 | tyrosine transaminase | 99.94 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.94 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.94 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.94 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.94 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.94 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.94 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.94 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.94 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.94 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.94 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.94 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.93 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.93 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.93 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.93 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.93 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.93 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.93 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.93 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.93 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.93 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.93 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.93 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.93 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.93 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.93 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.93 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.93 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.93 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.93 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.93 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.93 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.93 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.92 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.92 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.92 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.92 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.92 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.92 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.91 | |
| PLN02721 | 353 | threonine aldolase | 99.91 | |
| PLN02231 | 534 | alanine transaminase | 99.91 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.91 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.91 | |
| PLN02397 | 423 | aspartate transaminase | 99.91 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.9 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.9 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.89 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.89 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.89 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.89 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.89 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.89 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.89 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.88 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.88 | |
| PLN02368 | 407 | alanine transaminase | 99.88 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.88 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.88 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.87 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.86 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.86 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.86 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.85 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.85 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.85 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.85 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.85 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.85 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.84 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.84 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.83 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.83 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.83 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.82 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.82 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.82 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.82 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.82 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.82 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.81 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.8 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.79 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.79 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.79 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.79 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.78 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.78 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.78 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.77 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.77 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.77 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.76 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.76 | |
| PLN02651 | 364 | cysteine desulfurase | 99.75 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.74 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.74 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.73 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.73 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.73 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.73 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.72 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.72 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.72 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.72 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.72 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.72 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.71 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.71 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.71 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.71 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.71 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.71 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.7 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.7 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.69 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.69 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.69 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.69 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.69 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.68 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.68 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.68 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.67 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.67 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.67 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.66 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.66 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.66 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.65 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.65 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.64 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.63 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.63 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.62 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.62 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.62 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.62 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.61 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.61 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.61 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.61 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.6 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.6 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.6 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.6 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.58 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.58 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.57 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.57 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.57 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.57 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.56 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.55 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.55 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.55 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.54 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.54 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.53 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.53 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.53 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.51 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.51 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.5 | |
| PLN02263 | 470 | serine decarboxylase | 99.5 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.49 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.49 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.49 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.49 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.46 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.46 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.44 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.44 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.43 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.43 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.42 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.41 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.4 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.4 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.4 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.3 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.29 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.29 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.28 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.27 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.25 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.25 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.22 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.19 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.19 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.12 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.12 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.12 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.09 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.08 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.08 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.04 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.02 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.01 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 98.99 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.98 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.95 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 98.91 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 98.89 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.77 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.76 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 98.71 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.71 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.53 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.5 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.44 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.42 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 98.4 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.38 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.35 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 98.29 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 98.15 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.06 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.06 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 97.93 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 97.83 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.56 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 97.45 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 97.34 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 97.32 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 97.21 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 96.71 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 92.31 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 88.43 |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-90 Score=659.53 Aligned_cols=426 Identities=58% Similarity=1.006 Sum_probs=410.6
Q ss_pred CchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 128 (474)
..++|+++++++++++|+|+++++|.|++++.+|+++++++|+|+||+|||+||||+++|++..|||+||.|++|+++|+
T Consensus 3 ~~~~S~~l~~~A~~~~pGGvnspvra~~~v~~~P~fi~~g~Ga~l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l 82 (432)
T COG0001 3 QFPKSEALFERAKKVIPGGVNSPVRAFKSVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQL 82 (432)
T ss_pred CccchHHHHHHHhhhCCCCCCccccccCCCCCCCeeEEeccCCeEEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCcc
Q 011959 129 KKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (474)
Q Consensus 129 ~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (474)
++|..|+.|++.+.++|+.+++++|..|+|.|+||||||++.|||+||++|+|++||.|+++|||+.+..+...|++...
T Consensus 83 ~~G~~fg~Pte~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t 162 (432)
T COG0001 83 ERGLSFGAPTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAAT 162 (432)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCccc
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999988887
Q ss_pred CCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011959 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (474)
Q Consensus 209 ~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (474)
...|.++|+|.....+++.+||||+++++++++++++++|+||+||+.+|.|.+.|.++||++|++||++||++||+|||
T Consensus 163 ~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEV 242 (432)
T COG0001 163 LGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEV 242 (432)
T ss_pred CCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecc
Confidence 77799999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-C
Q 011959 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-P 367 (474)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~ 367 (474)
+||||....+++++||++||++||+|.+|||+|+|++.+++++|+.+.+.++.++.+|+++||++++|++++|+.+.+ +
T Consensus 243 iTGFR~~~gGaq~~~gi~PDlttlGKiIGGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~ 322 (432)
T COG0001 243 ITGFRVALGGAQGYYGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEE 322 (432)
T ss_pred hhhcccCCcccccccCcCcchhhhhhhhcCCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcc
Confidence 999998888999999999999999999999999999999999999999888999999999999999999999999987 5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc
Q 011959 368 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (474)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 447 (474)
..++++.+.+++|++.|++...++++...+...|.|+.+.|.+..+.++.+....+.+.+.++.+.|+++||++.|+.+.
T Consensus 323 ~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~~e 402 (432)
T COG0001 323 GVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQFE 402 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCcccc
Confidence 68999999999999999999999999999999999999999988899999988888888888888999999999999988
Q ss_pred ceEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 448 AGFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 448 ~~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
..+++..||+++||+++++++++++++
T Consensus 403 a~flS~ahte~di~~~~~a~~~~~~~~ 429 (432)
T COG0001 403 AGFLSTAHTEEDIDRTLEAADEAFKEL 429 (432)
T ss_pred ceeeecccCHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999998763
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-81 Score=633.76 Aligned_cols=441 Identities=84% Similarity=1.352 Sum_probs=388.7
Q ss_pred cccccceeeeccccCCCchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhcc
Q 011959 33 CSVKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAI 112 (474)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~ 112 (474)
+++++.+++.+ .+.+.+++|+++++++++++|+|+++++|.|.+.+++|+++++++|+|+||.|||+||||.+++++++
T Consensus 34 ~~~~~~~~~~~-~~~~~~~~S~~l~~ra~~~~pgGv~~~~r~~~~~~~~p~~~~~a~G~~l~D~dG~~yiD~~~g~g~~~ 112 (474)
T PLN02482 34 SVIKMAVSVEE-KKKFTTTKSEEIFKAAKELMPGGVNSPVRAFKSVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAI 112 (474)
T ss_pred chhhhhhhccc-cccCCChHHHHHHHHHHhhCCCCCCCcchhhcccCCCCeeEEEeeeCEEEECCCCEEEEecccccccc
Confidence 45666666654 45667889999999999999999999999887776779999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCC
Q 011959 113 IGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (474)
Q Consensus 113 lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (474)
+||+||+|.+|+++|++++..++.+++.+.+|+++|++..|+.++++|+|||+||++.|+|+||++|+|.+||.++++||
T Consensus 113 lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YH 192 (474)
T PLN02482 113 IGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYH 192 (474)
T ss_pred cCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 99999999999999999988778889999999999999998889999999999999999999999999999999999999
Q ss_pred CCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHH
Q 011959 193 GHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (474)
Q Consensus 193 g~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (474)
|+++..+...+.+......+..++++.....+++.+||||+++++++++++++++++||+||+++++|.+.|+++||++|
T Consensus 193 G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~l 272 (474)
T PLN02482 193 GHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGL 272 (474)
T ss_pred CCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHH
Confidence 99987776654433322235556666655667889999999999999987778899999999999999999999999999
Q ss_pred HHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChH
Q 011959 273 RRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352 (474)
Q Consensus 273 ~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~ 352 (474)
+++|++||++||+|||++|||+|.+++++++|+.||++||||+++||+|+|++++++++++.+.+.++.++++||++||+
T Consensus 273 r~lc~~~g~lLI~DEV~tGfR~g~~ga~~~~gv~PDi~t~gK~lggG~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl 352 (474)
T PLN02482 273 REITKENGALLVFDEVMTGFRIAYGGAQEYFGITPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPL 352 (474)
T ss_pred HHHHHHcCCEEEEeccccCeecCcchHhHHhCCCCCEEEecchhhCCCceEEEEEcHHHHHhhccCCCcccccCcchhHH
Confidence 99999999999999999999888889999999999999999999999999999999999999875445678899999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHH
Q 011959 353 AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (474)
Q Consensus 353 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (474)
+|++++++|++++++++++++++++++|+++|+++..+++++..+.+.+.|++++|..++..++.+...++......+.+
T Consensus 353 ~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~ 432 (474)
T PLN02482 353 AMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHR 432 (474)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHH
Confidence 99999999999988899999999999999999999888765544444455889999876665655555556666778999
Q ss_pred HHHHCCeEecccCCcceEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 433 GMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 433 ~l~~~Gv~v~~~~~~~~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
.|+++||++.+.+.+..++++.||++|||+++++++++++++
T Consensus 433 ~l~~~Gv~~~~~~~~~~~psl~ht~~dId~~l~al~~~l~~~ 474 (474)
T PLN02482 433 GMLEEGVYLAPSQFEAGFTSLAHTEEDIDFTIAAAERVLARI 474 (474)
T ss_pred HHHHCCeEEeccCCCCCcCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 999999999987654446899999999999999999999865
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-81 Score=590.08 Aligned_cols=368 Identities=33% Similarity=0.481 Sum_probs=339.0
Q ss_pred CCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHhhCCCCC
Q 011959 79 GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIE 156 (474)
Q Consensus 79 ~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~la~~l~~~~~~~~ 156 (474)
++.|+++++|+|+|+||.+|++||||.+|+++++|||+||.+++|+++|+++.. +..+.++...+|+++|++..|..+
T Consensus 22 ~~~~~~~~~G~G~~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~~~~la~~L~~~s~~~d 101 (404)
T COG4992 22 GRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSPFAD 101 (404)
T ss_pred CcCceeEEeccccEEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHhhCcccc
Confidence 335899999999999999999999999999999999999999999999999954 345789999999999999996689
Q ss_pred eEEEeCCHHHHHHHHHHHhHhhcC---CcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCCC
Q 011959 157 MVRFVNSGTEACMGVLRLARAFTG---RERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~---~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d 232 (474)
+|+|+|||+||||+|||+||.+++ +.+||.|+++|||++.++++.++...+..++ |..+ .+..+||||
T Consensus 102 ~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~--------g~~~vpfnD 173 (404)
T COG4992 102 RVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLP--------GFRHVPFND 173 (404)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCC--------CceecCCCC
Confidence 999999999999999999999997 7899999999999999999999987554333 3333 378899999
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t 311 (474)
++++++++.+ ++++||+||+||++|+++++++||+++++||++||++||+||||||+ |+|++|+++|+|+.|||+|
T Consensus 174 i~al~~ai~~---~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~t 250 (404)
T COG4992 174 IEALEAAIDE---DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILT 250 (404)
T ss_pred HHHHHHHhcc---CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEE
Confidence 9999999985 89999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
++|+||||+|+|++++++++.+.+. +..|++||++||++|+++.++|+.+.++++.+++++.+++|+++|+++..++
T Consensus 251 laK~LgGG~PigA~la~~~~~~~~~---~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~~ 327 (404)
T COG4992 251 LAKALGGGFPIGAMLATEEIASAFT---PGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLRELKRRY 327 (404)
T ss_pred eeccccCCccceeeEEchhhhhcCC---CCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999977777776 6779999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHH
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~ 469 (474)
+++.++||.|+|+++++..+. ....+.+.|.++|+++.+.+.+.+|+ ++.+|+|++++++++|++
T Consensus 328 ~~v~~vRG~GLmiGiel~~~~-------------~a~~~~~~~~~~gvL~~~a~~~ViR~~PpL~i~~eei~~~~~~l~~ 394 (404)
T COG4992 328 PLVKEVRGRGLMIGIELKEPY-------------RARDIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDALER 394 (404)
T ss_pred CceeeeecceeEEEEEecCcc-------------cHHHHHHHHHHCCeEEecCCCCeEEecCCccCCHHHHHHHHHHHHH
Confidence 989999999999999996531 23678999999999999998887776 799999999999999999
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
+++.
T Consensus 395 ~l~~ 398 (404)
T COG4992 395 ALAA 398 (404)
T ss_pred HHHH
Confidence 9874
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-77 Score=581.29 Aligned_cols=409 Identities=30% Similarity=0.443 Sum_probs=351.2
Q ss_pred CCchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHH
Q 011959 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127 (474)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~ 127 (474)
...++..++.++.+++++.++... ..|+++++++|+|+||+|||+||||.+++++.++||+||.|++|+++|
T Consensus 13 ~~~~~~~~~~~r~~~~~~r~~~~~--------~~p~~~~ra~G~~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q 84 (447)
T COG0160 13 APGPKALELIERREEALARSYGRF--------RFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQ 84 (447)
T ss_pred CCCcchHHHHHHHHHHhccccccc--------cCcceEEecccCEEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHH
Confidence 345566778888888777655431 249999999999999999999999999999999999999999999999
Q ss_pred HHhcC--CCCC-CCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhc
Q 011959 128 MKKGT--SFGA-PCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKA 202 (474)
Q Consensus 128 ~~~~~--~~~~-~~~~~~~la~~l~~~~~~--~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~ 202 (474)
+++.. ++.+ +.+...+++|+|.+..|+ .++++|+|||+||||.|||+||.+|++..||.|.++|||.+.++++++
T Consensus 85 ~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT 164 (447)
T COG0160 85 LAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLT 164 (447)
T ss_pred HHHhhcccCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhc
Confidence 99854 3333 348899999999999994 789999999999999999999999999999999999999999999999
Q ss_pred CCCCcc-CCC-CCCCCCCCCCCCceEEccCC---------CHHHHHHHHhc---CCCCeEEEEEccccCCCCcccCCHHH
Q 011959 203 GSGVAT-LGL-PDSPGVPKGATYETLTAPFN---------DVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDF 268 (474)
Q Consensus 203 g~~~~~-~~~-~~~~g~~~~~~~~~~~~~~~---------d~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (474)
+..... ..+ |..+++.+....+.++.|+. ..+.+++.+.. .+.++|+||+||+|+++|.+.||++|
T Consensus 165 ~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~f 244 (447)
T COG0160 165 GSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGF 244 (447)
T ss_pred cCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHH
Confidence 875432 111 22233333333334444432 13446664432 45689999999999999999999999
Q ss_pred HHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCC
Q 011959 269 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 347 (474)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~ 347 (474)
|++|+++|+|||++||+||||+|| |+|++|+++|+|+.|||+|+||++++|+|+|++++++++++ .. +..+.+||
T Consensus 245 l~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G~Pl~avv~r~ei~~-~~---~g~~~~Tf 320 (447)
T COG0160 245 LKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMD-WP---PGGHGGTF 320 (447)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCCCceeEEeccHHhcc-cC---CcccCCCC
Confidence 999999999999999999999999 99999999999999999999999999999999999999999 44 45688899
Q ss_pred CCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHH
Q 011959 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 427 (474)
Q Consensus 348 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 427 (474)
++||++|++++++|+.++++++.++..+.+++++++|.++..+++.+.+|||.|+|++++|.++. ..+.|+.+..
T Consensus 321 ~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~-----~t~~p~~~~~ 395 (447)
T COG0160 321 GGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDR-----DTKEPDAELA 395 (447)
T ss_pred CcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCC-----CCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998653 2344778889
Q ss_pred HHHHHHHHHCCeEecccC--CcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 428 ARFYRGMLEEGVYFAPSQ--FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 428 ~~~~~~l~~~Gv~v~~~~--~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.++.+.|+++|+++...+ .+.+++ ++++|+|++|+++++|++++++
T Consensus 396 ~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~ 445 (447)
T COG0160 396 AKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKE 445 (447)
T ss_pred HHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 999999999999988887 455555 7999999999999999999876
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-74 Score=583.67 Aligned_cols=425 Identities=50% Similarity=0.897 Sum_probs=372.1
Q ss_pred CchhHHHHHHHHhhhCCCCCCCccccccccC-CCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~ 127 (474)
.+++|.++++++++++|+|+++++|.+...+ ..|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|
T Consensus 2 ~~~~s~~~~~~a~~~~p~g~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q 81 (428)
T PRK12389 2 NFTKSEALHQEALEHIVGGVNSPSRSYKAVGGGAPVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEA 81 (428)
T ss_pred CChhhHHHHHHHHhhCCCCCCCccccccccCCCCCeEEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHH
Confidence 4578999999999999999998888775443 458999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCc
Q 011959 128 MKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVA 207 (474)
Q Consensus 128 ~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~ 207 (474)
++++..++.+++...+|+++|.+..|+.++++|++||+||++.|+|+||.+++|.+||.++++|||+++++++.++....
T Consensus 82 ~~~~~~~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~ 161 (428)
T PRK12389 82 AENGVLYGTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPS 161 (428)
T ss_pred HHhCCccCCCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCccc
Confidence 99876667788999999999999998788999999999999999999999999999999999999999999988875433
Q ss_pred cCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 011959 208 TLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287 (474)
Q Consensus 208 ~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DE 287 (474)
....|...+++.....+++.+|+||++.+++.++++++++++||+||+++++|.+.|+++||++|+++|++||++||+||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DE 241 (428)
T PRK12389 162 TLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDE 241 (428)
T ss_pred ccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 22223334444444457889999999999999987777899999999999999999999999999999999999999999
Q ss_pred cccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCC
Q 011959 288 VMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367 (474)
Q Consensus 288 v~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 367 (474)
|++|||++.+++++++|+.||++|+||++++|+|+|++++++++++.+...+..++++||++||++|++++++|++++++
T Consensus 242 V~tG~Rt~~~~a~~~~gv~PDivt~gK~lggG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~ 321 (428)
T PRK12389 242 VITAFRFMYGGAQDLLGVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQE 321 (428)
T ss_pred cccccccCcchhhHHhCCCCCeeeechhhcCCCceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcc
Confidence 99999888778888999999999999999999999999999999999864334578899999999999999999999888
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCeeEE-eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC
Q 011959 368 GTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF 446 (474)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 446 (474)
++++++++++++|+++|+++..+++++.++ ++.| +++++|..++..++.....++......+.+.|+++||++.+.+.
T Consensus 322 ~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~ 400 (428)
T PRK12389 322 GVYEKLDRLGAMLEEGILEAAEKHGITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKY 400 (428)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCC
Confidence 999999999999999999988888888887 5556 88999976544333222223445567889999999999998766
Q ss_pred cceEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 447 EAGFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 447 ~~~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+.+++++++|++||++++++++++++++
T Consensus 401 ~~~~~~l~~t~e~id~~~~~l~~~l~~~ 428 (428)
T PRK12389 401 EAWFLTTAHTEEDIEETLEAVDRAFAQL 428 (428)
T ss_pred CCeeecCCCCHHHHHHHHHHHHHHHHhC
Confidence 6677899999999999999999999764
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-72 Score=565.92 Aligned_cols=420 Identities=39% Similarity=0.656 Sum_probs=364.9
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
.++|.++++++++++|+|+++..|.|...+.+|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+++|++
T Consensus 4 ~~~s~~l~~~a~~~~p~g~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~ 83 (433)
T PRK00615 4 IQEMTHTFSEACQYFPGGVNSPVRACRSVGITPPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAE 83 (433)
T ss_pred cHHHHHHHHHHHhhCCCCcCCCcccccccCCCCceEEEeeeCEEEECCCCEEEEcccchhccccCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999987666667999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCC-CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchh---HHHhcCCC
Q 011959 130 KGTSFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP---FLVKAGSG 205 (474)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~-~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~---~~~~~g~~ 205 (474)
++..++.+++...+|+++|.+..|. .++|+|++||+||++.|+|+||.+++|.+||.++++|||++++ .+..++..
T Consensus 84 ~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~ 163 (433)
T PRK00615 84 RGTSYGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETS 163 (433)
T ss_pred hCCCCCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCC
Confidence 8877777888999999999999974 5799999999999999999999999999999999999999844 33333321
Q ss_pred CccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011959 206 VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (474)
Q Consensus 206 ~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (474)
... .+...+ +.........++|||++++++.++++++++++||+||+++++|.+.|+++|+++|+++|++||++||+
T Consensus 164 ~~~--~~~~~~-~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~ 240 (433)
T PRK00615 164 LDT--LTHLVD-TDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIM 240 (433)
T ss_pred cCc--CCCCCC-CCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 100 011111 11122345778999999999999876678999999999999999999999999999999999999999
Q ss_pred eccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc
Q 011959 286 DEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 365 (474)
Q Consensus 286 DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 365 (474)
||||+|||+|.+++++++|+.||++||||++++|+|+|++++++++++.+......++++||++||++|++++++|++++
T Consensus 241 DEv~tG~R~G~~ga~~~~gv~PDi~~~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~ 320 (433)
T PRK00615 241 DEVVTGFRVAQGGAAAIYHVKPDITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCR 320 (433)
T ss_pred EcccccccccHhHHHHhcCCCCCeEEEcccccCCcceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHh
Confidence 99999998898999999999999999999999999999999999999998644455678899999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcCC-eeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc
Q 011959 366 EPGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS 444 (474)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~ 444 (474)
++++++++++++++|+++|+++..+.++ +..++ .|+|++++|.+.+.+++.+....+......+.+.|+++||++.+.
T Consensus 321 ~~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~ 399 (433)
T PRK00615 321 EQGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPS 399 (433)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCc
Confidence 8889999999999999999998777554 44566 899999999876655565555556666788999999999999988
Q ss_pred CCcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 445 QFEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 445 ~~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.++...++..||++|||++++++++++++
T Consensus 400 ~~~~~~ls~~ht~~did~~~~a~~~~~~~ 428 (433)
T PRK00615 400 PFEASFLSSAHSMENLDYAQNVLIDSLEK 428 (433)
T ss_pred cccccceecCCCHHHHHHHHHHHHHHHHH
Confidence 76666789999999999999999999875
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-71 Score=562.30 Aligned_cols=418 Identities=28% Similarity=0.411 Sum_probs=357.8
Q ss_pred CchhHHHHHHHHhhhCCCCC-CCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGV-NSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~ 127 (474)
..++|.++++++++++|+|+ ++..+.+. ..+|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|
T Consensus 26 ~~~~S~~l~~ra~~~~p~g~~~~~~~~~~--~~~p~~~~~a~G~~v~D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q 103 (453)
T PRK07046 26 AHPRSRALAARAAQHLLGGVPMHWMNDWP--TPFPLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQ 103 (453)
T ss_pred cChhhHHHHHHHHhhCCCCcccccccccC--CCCCCeEEeeeeCEEEeCCCCEEEEecccccccccCCCCHHHHHHHHHH
Confidence 56789999999999999999 44444442 1359999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCc
Q 011959 128 MKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVA 207 (474)
Q Consensus 128 ~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~ 207 (474)
++++..++.+++.+.+|+++|++.++ .++++|+|||+||++.|+|+||++|+|++||.|+++|||++++++.....+.
T Consensus 104 ~~~~~~~~~~~~~~~~lAe~l~~~~~-~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~- 181 (453)
T PRK07046 104 ARRGLTTMLPSEDAAWVGEELARRFG-LPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGR- 181 (453)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCC-
Confidence 99987777889999999999999984 8999999999999999999999999999999999999999988776432111
Q ss_pred cCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 011959 208 TLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287 (474)
Q Consensus 208 ~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DE 287 (474)
....+...+++.....+++.+||||++++++++. ++++++||+||+++++|.++|+++||++|+++|++||++||+||
T Consensus 182 ~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~--~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DE 259 (453)
T PRK07046 182 PVQRPGLLGQVHDLTATTRVVEFNDLAALEAALA--DGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDE 259 (453)
T ss_pred CCCCCCCCCCCccccCceEeeCCCCHHHHHHHhC--CCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEc
Confidence 0011223344444445678899999999999995 35899999999999999999999999999999999999999999
Q ss_pred cccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcC------CCCcccccCCCCChHHHHHHHHHH
Q 011959 288 VMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP------AGPMYQAGTLSGNPLAMTAGIHTL 361 (474)
Q Consensus 288 v~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~------~~~~~~~~t~~~~~~~~aaa~aal 361 (474)
|++ ||.|..+.++++|+.||++||||+++||+|+|++++++++++.+.+ .+...+.+||++||++|++++++|
T Consensus 260 V~t-fr~g~Gg~~~~~gv~PDi~t~gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L 338 (453)
T PRK07046 260 THT-ISSGPGGYTRAHGLEPDFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATL 338 (453)
T ss_pred ccc-CccCCcchhHHhCCCccceeehhhhcCCCcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHH
Confidence 999 7766666778899999999999999999999999999999998863 123457889999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccccc-chHHHHHHHHHHHHCCeE
Q 011959 362 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS-ETTKFARFYRGMLEEGVY 440 (474)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~Gv~ 440 (474)
++++++++++++++++++|+++|+++..+++++..+++.|+++.++|.+++..++.+...+ +......+...|+++||+
T Consensus 339 ~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~ 418 (453)
T PRK07046 339 AEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVL 418 (453)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCE
Confidence 9998889999999999999999999988899999999999999999865544444333322 445567788999999999
Q ss_pred ecccCCcceEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 441 FAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 441 v~~~~~~~~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+.+.+ +.++++..||++|||+++++++++++++
T Consensus 419 ~~~~~-~~~~~~p~~t~~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 419 ITPFH-NMMLVCPATTAADVDRLVAAFDACLGEL 451 (453)
T ss_pred Eeccc-CcEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 98753 4456777899999999999999998763
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-69 Score=545.23 Aligned_cols=423 Identities=60% Similarity=1.007 Sum_probs=366.1
Q ss_pred hHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc
Q 011959 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG 131 (474)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~ 131 (474)
+|+++++++++++|+|++..+|.+...+..|+++.+++|+|+||.|||+||||.+|+++.++||+||+|++|+++|++++
T Consensus 1 ~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~ 80 (423)
T TIGR00713 1 KSENLFEEAKQVFPGGVNSPVRAFKSVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERG 80 (423)
T ss_pred CcHHHHHHHHhhCCCCCCCcccccccCCCCCeeEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhC
Confidence 47899999999999999988887755555699999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC
Q 011959 132 TSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL 211 (474)
Q Consensus 132 ~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~ 211 (474)
..++.+++...+|+++|++.+|..++|+|++||+||++.|+|+||.++++++||.++++|||++...+..++.+......
T Consensus 81 ~~~~~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~ 160 (423)
T TIGR00713 81 TSYGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGL 160 (423)
T ss_pred CcCCCCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCC
Confidence 76667888899999999999986789999999999999999999999999999999999999988888766543322222
Q ss_pred CCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 011959 212 PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291 (474)
Q Consensus 212 ~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (474)
+..++++.......+.+|++|+++++++++++++++++||+||+++++|.+.++++|+++|+++|++||++||+||||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g 240 (423)
T TIGR00713 161 PTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTG 240 (423)
T ss_pred CCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccc
Confidence 33344444444567888999999999999866568999999999999999999899999999999999999999999999
Q ss_pred cccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 292 FRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 292 ~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
||+|..+..+++++.||++||||++++|+|+||+++++++++.+.......+++||++||++|++++++|+.++++++.+
T Consensus 241 ~r~g~~~~~~~~~~~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~ 320 (423)
T TIGR00713 241 FRVALGGAQEYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYT 320 (423)
T ss_pred cccCcchhHHHhCCCcchhhhhhhhcCCCceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHH
Confidence 98777777888999999999999999999999999999999998743345677899999999999999999998878999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE
Q 011959 372 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT 451 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~ 451 (474)
+++++++++++.|+++..+++++.++++.|+|+++++..+...++.....++......+.+.|+++||++.+.+++.+++
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~l 400 (423)
T TIGR00713 321 ELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQFEACFL 400 (423)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCCccceee
Confidence 99999999999999988888988899999999999987543322221122334445678889999999998776566788
Q ss_pred ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 452 SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 452 ~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+..+|+++|++++++|+++++++
T Consensus 401 ~~~~t~~~i~~~~~~l~~~l~~~ 423 (423)
T TIGR00713 401 SAAHTEEDIENTIEAAEEVFAEL 423 (423)
T ss_pred ECCCCHHHHHHHHHHHHHHHhhC
Confidence 88899999999999999999865
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-70 Score=504.10 Aligned_cols=410 Identities=27% Similarity=0.349 Sum_probs=354.8
Q ss_pred ccCCCchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHH
Q 011959 45 RKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAAL 124 (474)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~ 124 (474)
|.+++.+...+..+..++.+..+..++.+ .|++|.+++|+|++|.+|++|||+.+|.++..+||+||+|++++
T Consensus 3 p~~~~~~~~~~~~~~~~~~ls~~~~~~~~-------~Pl~Iv~~~~~ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~ 75 (442)
T KOG1404|consen 3 PPPYTGPSTDQVLQKRRAFLSPGLTSYYK-------KPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAA 75 (442)
T ss_pred CCccCCcchhhHHHHhhhcCCcceecccc-------CCceEEecceEEEEcCCCceeehhhCCeEEEEcCCCChHHHHHH
Confidence 33566666666666667777666554422 49999999999999999999999999999999999999999999
Q ss_pred HHHHHhc--CCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHh
Q 011959 125 GETMKKG--TSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201 (474)
Q Consensus 125 ~~~~~~~--~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~ 201 (474)
.+|+.+. +..++.++...+||+.|.+.+| +...++|+|||+|||++|+++||.|++.-+||.+.++|||.+..++.+
T Consensus 76 ~kQl~~l~H~t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~gl 155 (442)
T KOG1404|consen 76 VKQLKKLYHTTSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGL 155 (442)
T ss_pred HHhhhhhEEeeccccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhccc
Confidence 9999774 3345678888999999999999 588999999999999999999999999999999999999999999999
Q ss_pred cCCCCccCCCCCC-CCCCCCCCCceEEccCCC----------HHHHHHHHhc-CCCCeEEEEEccccCCCCcccCCHHHH
Q 011959 202 AGSGVATLGLPDS-PGVPKGATYETLTAPFND----------VSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFL 269 (474)
Q Consensus 202 ~g~~~~~~~~~~~-~g~~~~~~~~~~~~~~~d----------~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (474)
++...++..+|.. .++.+...++.++.++.+ .+++++++.. .++.++++|+|++++.+|++.++++||
T Consensus 156 t~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYl 235 (442)
T KOG1404|consen 156 TGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYL 235 (442)
T ss_pred ccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHH
Confidence 9988777666554 366566666677777653 2556666543 456799999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCC
Q 011959 270 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348 (474)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~ 348 (474)
+++.++|+|+|.++|.||||+|| |+|.+|.++..|+.|||+|++|++|+|+|+|+++.++||++.+.+ ...++.||+
T Consensus 236 ka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AVvtt~EIa~v~~~--~~~~fnTyg 313 (442)
T KOG1404|consen 236 KAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTPEIADVLNQ--KSSHFNTYG 313 (442)
T ss_pred HHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccCCCcceeeecCHHHHHHHHh--ccccccccC
Confidence 99999999999999999999999 999999999999999999999999999999999999999999985 334888999
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHH
Q 011959 349 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 428 (474)
Q Consensus 349 ~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 428 (474)
+||++|++++++|++++++++.++..+.+.+|+++|.++..+++++.+|||.|+|+++|+.++... .+.|......
T Consensus 314 gnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~----~~pp~~~~~~ 389 (442)
T KOG1404|consen 314 GNPVACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSE----PKPPATAEGA 389 (442)
T ss_pred CCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCC----CCCcchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876432 2335556667
Q ss_pred HHHHHHHHCCeEecccCCc--ceEE--ecCCcHHHHHHHHHHH
Q 011959 429 RFYRGMLEEGVYFAPSQFE--AGFT--SLAHSSDDIQHTITAA 467 (474)
Q Consensus 429 ~~~~~l~~~Gv~v~~~~~~--~~~~--~~~~t~e~i~~~l~~l 467 (474)
.+.+.|.++|+++.-++.. .+|+ ++++|+||+|.+++.+
T Consensus 390 ~i~~~cke~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 390 VIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred HHHHHHHHhCeeeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence 7899999999999666532 3455 7999999998888855
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-69 Score=544.99 Aligned_cols=416 Identities=22% Similarity=0.315 Sum_probs=340.9
Q ss_pred CchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 128 (474)
++.+|.+++++.++++.... +.+.. ..|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~----~~~~~--~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~ 76 (451)
T PRK07678 3 KTKQTDELLAKDEQYVWHGM----KPYNP--NATMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQL 76 (451)
T ss_pred cccCHHHHHHHhhcccCCCc----ccccc--CCCeeEEeeeeeEEEeCCCCEEEEccccHHhhcCCCCCHHHHHHHHHHH
Confidence 45567788887666544322 11211 1379999999999999999999999999999999999999999999999
Q ss_pred HhcCCC--CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhc------CCcEEEEEeCCCCCCchhHHH
Q 011959 129 KKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLV 200 (474)
Q Consensus 129 ~~~~~~--~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~ 200 (474)
+++..+ .+.++...+|+++|++.+|..++++|+|||+||++.|+|+||.++ +|.+||.++++|||++.++++
T Consensus 77 ~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als 156 (451)
T PRK07678 77 KTLSYFPLTQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALA 156 (451)
T ss_pred HhcCccccccCCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhh
Confidence 986433 356788899999999999866799999999999999999999986 578999999999999999998
Q ss_pred hcCCCCccCCC-CCCCCCCCCCCCceEEccC------CC---HHHHHHHHh-cCCCCeEEEEEccccCCCCcccCCHHHH
Q 011959 201 KAGSGVATLGL-PDSPGVPKGATYETLTAPF------ND---VSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFL 269 (474)
Q Consensus 201 ~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~------~d---~~~le~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (474)
.++.......+ |..+++......+.+..++ +| ++.++++|+ ++++++++||+||+++++|.+.|+++||
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl 236 (451)
T PRK07678 157 ATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYM 236 (451)
T ss_pred cCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHH
Confidence 88764322211 2233332222223333333 22 334677776 4467899999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC---CCcccc
Q 011959 270 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQA 344 (474)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~---~~~~~~ 344 (474)
++|+++|++||++||+|||+||| |+|.+|+++++|+.||++|+||+++|| +|+|++++++++++.+... ..+.|+
T Consensus 237 ~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~ 316 (451)
T PRK07678 237 KAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHV 316 (451)
T ss_pred HHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccC
Confidence 99999999999999999999999 999998999999999999999999998 6999999999999988642 124688
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccch
Q 011959 345 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSET 424 (474)
Q Consensus 345 ~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~ 424 (474)
+||++||++|++++++|++++++++++++++++++|+++|+++..+++.+.++++.|+|+++++..+... ....+.
T Consensus 317 ~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~----~~~~~~ 392 (451)
T PRK07678 317 NTFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKET----KEPADN 392 (451)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcc----cCcCch
Confidence 9999999999999999999998999999999999999999988888999999999999999999753211 011133
Q ss_pred HHHHHHHHHHHHCCeEecccCC------cceEE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 425 TKFARFYRGMLEEGVYFAPSQF------EAGFT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 425 ~~~~~~~~~l~~~Gv~v~~~~~------~~~~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
.....+...|+++||++.+.+. +.+++ ++++|++|||+++++|+++++++
T Consensus 393 ~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 393 DKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred HHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 4567889999999999976431 33454 68899999999999999999764
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-69 Score=544.95 Aligned_cols=421 Identities=19% Similarity=0.202 Sum_probs=337.9
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
+.+++++.++.+++++.+.... ..+......|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~ 80 (461)
T PRK07482 2 MQKIDELLAWDRDHFFHPSTHL-GDHARGELPGRIVEGGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAK 80 (461)
T ss_pred cccHHHHHHhhhhhccCCcccc-cccccccCCCeeEEeeeeeEEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHH
Confidence 4567788887776665443322 111111123899999999999999999999999999999999999999999999999
Q ss_pred hcCC----CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhH
Q 011959 130 KGTS----FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPF 198 (474)
Q Consensus 130 ~~~~----~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~ 198 (474)
++.. .++.++...+|+++|++..| +.++++|+||||||++.|+|+||.+ ++|.+||.++++|||++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga 160 (461)
T PRK07482 81 ELAYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVT 160 (461)
T ss_pred hcCccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhh
Confidence 8642 24678999999999999998 5789999999999999999999976 45889999999999999998
Q ss_pred HHhcCCCCccCCC-CCCCCCCCCCCCceEEcc----------CCCHHHHHHHHh-cCCCCeEEEEEccccCCCCcccCCH
Q 011959 199 LVKAGSGVATLGL-PDSPGVPKGATYETLTAP----------FNDVSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 199 ~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~----------~~d~~~le~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
++.++.......+ |...++........+..+ .++++++++++. ..++++++||+||+++++|.++|++
T Consensus 161 ~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~ 240 (461)
T PRK07482 161 GSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPA 240 (461)
T ss_pred hhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCH
Confidence 8887754322111 111221110001111111 014678888885 3456899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCc-ceEEEEecHHHHHhhcCC----CC
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA----GP 340 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~-~iG~~~~~~~i~~~~~~~----~~ 340 (474)
+|+++|+++|++||++||+|||+||| |+|.+|+++++|+.||++|++|+++||+ |+|++++++++++.+... +.
T Consensus 241 ~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~ 320 (461)
T PRK07482 241 GYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGA 320 (461)
T ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCc
Confidence 99999999999999999999999999 9999999999999999999999999996 999999999999887531 23
Q ss_pred cccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccc
Q 011959 341 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (474)
Q Consensus 341 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (474)
..|++||++||++|++++++|+.++++++.+++++++++|+++|+++..+++.+.++++.|+|++++|.++.... ...
T Consensus 321 ~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~--~~~ 398 (461)
T PRK07482 321 IGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDR--TPF 398 (461)
T ss_pred cccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcC--CCC
Confidence 468899999999999999999999999999999999999999999998899999999999999999997532110 000
Q ss_pred ccchHHHHHHHHHHHHCCeEeccc-CCcceE--EecCCcHHHHHHHHHHHHHHHhh
Q 011959 421 KSETTKFARFYRGMLEEGVYFAPS-QFEAGF--TSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~v~~~-~~~~~~--~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+.......+...|+++||++.+. ..+.++ +++++|++||++++++|++++++
T Consensus 399 ~~~~~~~~~i~~~~~~~Gvl~~~~~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 454 (461)
T PRK07482 399 DPALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVDE 454 (461)
T ss_pred ChhhHHHHHHHHHHHHCCcEEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 011123467889999999998653 123444 37999999999999999999865
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-70 Score=528.43 Aligned_cols=388 Identities=28% Similarity=0.336 Sum_probs=328.1
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCC-C-CC
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-S-IE 156 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~-~~ 156 (474)
|.++++++|.|+||.|||+|||.+++||++++||+||+|.+|+++|+++... ++..+....+||++|++..| + .+
T Consensus 27 ~~~i~~aeG~yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L~~~aP~~~l~ 106 (449)
T COG0161 27 PRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLD 106 (449)
T ss_pred ceeeeecceeEEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCchHHHHHHHHHHhCCCCCcc
Confidence 7899999999999999999999999999999999999999999999998532 34456669999999999999 6 89
Q ss_pred eEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCC-CccCCC-CCCCCCCCCCCCceEEc
Q 011959 157 MVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSG-VATLGL-PDSPGVPKGATYETLTA 228 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~-~~~~g~~~~~~~~~~~~ 228 (474)
+|+|++|||||+|.|||+|+.| ++|.++|....+|||.+.++++.+|.. .....+ +..++..+......+..
T Consensus 107 ~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~ 186 (449)
T COG0161 107 HVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRR 186 (449)
T ss_pred EEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCccccc
Confidence 9999999999999999999887 346779999999999999999998832 221111 11222111111111111
Q ss_pred cC---------CCHHHHHHHHhcCC-CCeEEEEEccccCC-CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC
Q 011959 229 PF---------NDVSALENLFENNK-GEIAAIILEPVVGN-SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 296 (474)
Q Consensus 229 ~~---------~d~~~le~~l~~~~-~~~a~vi~ep~~~~-~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~ 296 (474)
+. ..+++||++|.+++ +++++||+||+.+. +|+++|+++||+++++||++||++||+|||.||| |+|.
T Consensus 187 ~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~ 266 (449)
T COG0161 187 GFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGK 266 (449)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCch
Confidence 11 23677888888765 89999999998887 9999999999999999999999999999999999 9999
Q ss_pred CccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcC--CCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHH
Q 011959 297 GGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 373 (474)
Q Consensus 297 ~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~--~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 373 (474)
+|+++++|++||++|++|++++| +|+|+++.++++.+.+.. .+.++|+.||++||++|++|++.|++++++++.+++
T Consensus 267 ~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~ 346 (449)
T COG0161 267 MFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERV 346 (449)
T ss_pred hhhhhhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999 599999999999999875 356789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc-ceEEe
Q 011959 374 NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTS 452 (474)
Q Consensus 374 ~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~~~ 452 (474)
++.+.+|.++|++++.+++.+.+||+.|++.++++..+....... +.....++...++++|++++|.+.. .+.++
T Consensus 347 ~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f----~~~~~~~~~~~~~e~Gl~iRp~g~~i~~~PP 422 (449)
T COG0161 347 AEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPF----EARVGARVRAAALERGLLIRPLGDVIYLMPP 422 (449)
T ss_pred HHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccch----hhhHHHHHHHHHHHCCeEEeecCCEEEEcCC
Confidence 999999999999977778999999999999999998653211000 2344568889999999999999642 22347
Q ss_pred cCCcHHHHHHHHHHHHHHHhh
Q 011959 453 LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+++|++|||++++++.+++++
T Consensus 423 liit~~eid~l~~~l~~al~~ 443 (449)
T COG0161 423 LIITREEIDELVDALREALDE 443 (449)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=539.76 Aligned_cols=425 Identities=65% Similarity=1.083 Sum_probs=369.9
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
+++|++++|++++++|+|.+++++.+++++..|+++.+++|+|+||.||++||||.+++++.++||+||+|++++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~G~~l~d~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~ 80 (426)
T PRK00062 1 MSKSEELFERAKKLIPGGVNSPVRAFKSVGGTPRFIERAKGAYLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAE 80 (426)
T ss_pred CchhHHHHHHHHHhCCCCcCCcccccCCCCCCCeEEEeCcCCEEEeCCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHH
Confidence 35799999999999999999888888777667899999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccC
Q 011959 130 KGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (474)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (474)
++..++.+++...+|+++|++.+|+.++++|++||+||++.|++++|.++++++||.++++|||++.+++..++......
T Consensus 81 ~~~~~~~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 160 (426)
T PRK00062 81 KGLSFGAPTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATL 160 (426)
T ss_pred hCCcCCCCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCcccccc
Confidence 86655667888999999999998777899999999999999999999999999999999999999988887765432221
Q ss_pred CCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011959 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (474)
Q Consensus 210 ~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (474)
..+...+.+.......+.++|+|++++++.++++++++++||+||+++++|.+.++++||++|+++|++||+++|+||||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~ 240 (426)
T PRK00062 161 GLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVM 240 (426)
T ss_pred CCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeech
Confidence 22222232222223568889999999999997666789999999999999999999999999999999999999999999
Q ss_pred cCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCH
Q 011959 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (474)
Q Consensus 290 ~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (474)
+|||+|.++..+++++.||++++||++++|||+|++++++++++.+...+..++++|+++||++|++++++|+.++++++
T Consensus 241 ~G~r~g~~~~~~~~~~~pDi~~~gK~l~~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~ 320 (426)
T PRK00062 241 TGFRVALGGAQGYYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGF 320 (426)
T ss_pred hccccCCccHHHHhCCCcchHhhhhHhhCCCcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchH
Confidence 99987878888889999999999999999999999999999999986444556778999999999999999999988889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcce
Q 011959 370 YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 449 (474)
++++++++++++++|+++..+++++.++++.|+|+++++..++..++.....++......+.+.|+++||++.+.+++.+
T Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~~~~~ 400 (426)
T PRK00062 321 YEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQFEAG 400 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCCcCce
Confidence 99999999999999999888889888999999999999976443333333334555567899999999999998877778
Q ss_pred EEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 450 FTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 450 ~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
++++++|+++|++++++|+++++++
T Consensus 401 ~~~~~~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 401 FVSAAHTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred eeeccCCHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999998763
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-68 Score=538.55 Aligned_cols=392 Identities=25% Similarity=0.356 Sum_probs=328.5
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCC-CCe
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPS-IEM 157 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~-~~~ 157 (474)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+++|++++.. ..+.++...+|+++|++..|+ .++
T Consensus 35 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~ 114 (451)
T PRK06062 35 NPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAPAHANDARSEAARLIAERAPGDLSK 114 (451)
T ss_pred CCceEEeceeeEEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCCccCCHHHHHHHHHHHHhCCCCCCE
Confidence 48999999999999999999999999999999999999999999999998643 345788899999999999984 789
Q ss_pred EEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC---CC--
Q 011959 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---ND-- 232 (474)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~---~d-- 232 (474)
|+|++||+||++.|+|+||.+++|.+||.++++|||++.++++.++........|..++++.......+..++ +|
T Consensus 115 v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 194 (451)
T PRK06062 115 VFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEE 194 (451)
T ss_pred EEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHH
Confidence 9999999999999999999999999999999999999999999887543221112222332221222333334 33
Q ss_pred -----HHHHHHHHhcC-CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCC
Q 011959 233 -----VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 305 (474)
Q Consensus 233 -----~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~ 305 (474)
+++++++|+.+ ++++++||+||+++++|.+.|+++||++|+++|++||++||+|||++|| |+|.+|+++++|+
T Consensus 195 ~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv 274 (451)
T PRK06062 195 ECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGV 274 (451)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCC
Confidence 67888888653 4689999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCceeehhhhcCCCc-ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHH
Q 011959 306 TPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT-GELTQG 383 (474)
Q Consensus 306 ~pdi~t~sK~l~~G~-~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~-~~l~~~ 383 (474)
.||++||||++++|+ |+|++++++++++.+.. ..+.+++||++||++|++++++|++++++++++++++++ ++++++
T Consensus 275 ~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~-~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~ 353 (451)
T PRK06062 275 VPDLITFAKGVNSGYVPLGGVAISEAIAATFAD-RPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPG 353 (451)
T ss_pred CCCeeeechhhhcCCcCcEEEEEcHHHHHHhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 999999999999995 99999999999998863 234577899999999999999999998888999999999 699999
Q ss_pred HHHHhhhcCCeeEEeeeceeEEEEEecCCC-cCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHH
Q 011959 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPV-YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDI 460 (474)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i 460 (474)
|+++..+++.+.++++.|+|+++++..++. .+..+....+......+.+.|+++||++.+.+ +.+++ ++.+|++||
T Consensus 354 L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~~-~~lrl~ppl~~t~~ei 432 (451)
T PRK06062 354 LRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVNG-NRIHVVPPCTVTEDEV 432 (451)
T ss_pred HHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeecC-CEEEEECCccCCHHHH
Confidence 999988889889999999999999964321 11000000112345678899999999987643 34554 679999999
Q ss_pred HHHHHHHHHHHhhC
Q 011959 461 QHTITAAEKVLRQI 474 (474)
Q Consensus 461 ~~~l~~l~~~~~~~ 474 (474)
|+++++|+++++++
T Consensus 433 d~~~~~l~~~l~~~ 446 (451)
T PRK06062 433 REGLAILDAALAVA 446 (451)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998753
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-68 Score=538.25 Aligned_cols=390 Identities=22% Similarity=0.264 Sum_probs=322.9
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHhhCC-CC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVP-SI 155 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~----~~~~~~~~~~la~~l~~~~~-~~ 155 (474)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+++|+++... +++.++...+|+++|++.+| +.
T Consensus 28 ~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 107 (459)
T PRK05965 28 GVTVLASAKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSL 107 (459)
T ss_pred CCceEEeeeEeEEEECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCc
Confidence 37899999999999999999999999999999999999999999999998542 24568888999999999998 67
Q ss_pred CeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEc
Q 011959 156 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 228 (474)
Q Consensus 156 ~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~ 228 (474)
++++|++||+||++.|||+||.+ ++|.+||.++++|||++.+++..++.......+ +..++.........+..
T Consensus 108 ~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (459)
T PRK05965 108 NHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRN 187 (459)
T ss_pred CEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCccccc
Confidence 89999999999999999999988 458899999999999999888887753322111 11111100000001111
Q ss_pred cC-CC--------HHHHHHHHhcCC-CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC
Q 011959 229 PF-ND--------VSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (474)
Q Consensus 229 ~~-~d--------~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (474)
++ +| +++++++++++. +++++||+||+++++|.+.|+++||++|+++|++||++||+|||+||| |+|.+
T Consensus 188 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~ 267 (459)
T PRK05965 188 PVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPL 267 (459)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchh
Confidence 11 23 367888887543 689999999999999999999999999999999999999999999999 99999
Q ss_pred ccccccCCCCceeehhhhcCCCc-ceEEEEecHHHHHhhcCC----CCcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 298 GAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 298 ~~~~~~g~~pdi~t~sK~l~~G~-~iG~~~~~~~i~~~~~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
|+++++|+.|||+|+||+++||+ |+|++++++++++.+... ..+.+++||++||++|++++++|++++++++.++
T Consensus 268 ~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~ 347 (459)
T PRK05965 268 FACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLAN 347 (459)
T ss_pred hhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999999995 999999999999988632 1246889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceE--
Q 011959 373 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF-- 450 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~-- 450 (474)
+++++++|+++|+++. +++.+.++++.|+|++++|..+.... ....++......+.+.|+++||++.+.+...++
T Consensus 348 ~~~~g~~l~~~l~~l~-~~~~v~~vrG~Gl~~gie~~~~~~~~--~~~~~~~~~~~~i~~~~~~~Gll~~~~g~~~i~~~ 424 (459)
T PRK05965 348 GQKAGPRFAAGLDALR-AHPLVGDVRGRGLLGALELVADKATK--TPFDAALDPADRIFDRAYANGLVFRAFGDGVLGFA 424 (459)
T ss_pred HHHHHHHHHHHHHhhc-cCCCEEEEeecceEEEEEEecccccc--CCCCchhHHHHHHHHHHHhCCeEEEecCCcEEEEE
Confidence 9999999999999975 58889999999999999997532110 000112234567889999999999887644444
Q ss_pred EecCCcHHHHHHHHHHHHHHHhh
Q 011959 451 TSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 451 ~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+++++|++||++++++|++++++
T Consensus 425 PpL~it~~ei~~~~~~l~~~l~~ 447 (459)
T PRK05965 425 PALCCTEGEFDLIFERTRKTLDD 447 (459)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999875
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-68 Score=537.73 Aligned_cols=402 Identities=25% Similarity=0.372 Sum_probs=334.5
Q ss_pred CchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 128 (474)
..+++.+++++.+++++.+..++ .|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|+
T Consensus 15 ~~~~s~~~~~~~~~~~~~~~~~~---------~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~ 85 (443)
T PRK06058 15 PGPKSQALAERRAAAVAAGVGST---------LPVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQV 85 (443)
T ss_pred CCccHHHHHHHHHHhhccccccC---------CCceEEeeeeeEEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHH
Confidence 33467778888778887765432 389999999999999999999999999999999999999999999999
Q ss_pred HhcCCC---CCCCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcC
Q 011959 129 KKGTSF---GAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG 203 (474)
Q Consensus 129 ~~~~~~---~~~~~~~~~la~~l~~~~~~--~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g 203 (474)
+++..+ ..+++...+|+++|++.+|+ .++++|++||+||++.|+|+||.++++++||.++++|||++.++++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~ 165 (443)
T PRK06058 86 ARFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTA 165 (443)
T ss_pred HhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcC
Confidence 885422 24678889999999999984 3799999999999999999999999999999999999999999998876
Q ss_pred CCC-ccCCC-CCCCCCCCCCCCceEEccCCC---------------HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCH
Q 011959 204 SGV-ATLGL-PDSPGVPKGATYETLTAPFND---------------VSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 204 ~~~-~~~~~-~~~~g~~~~~~~~~~~~~~~d---------------~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
... ....+ |..+++.. ..+.+++++ ++.+++.+ .++++++||+||+++++|.+.|++
T Consensus 166 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~iAavi~EPi~g~gG~~~p~~ 239 (443)
T PRK06058 166 KSMPYKSGFGPFAPEVYR----APMSYPYRDPKGLATDGEEAAARAITVIEKQV--GADNLAAVIIEPIQGEGGFIVPAE 239 (443)
T ss_pred CCcccccccCCCCCCceE----cCCCcccccccccccchHHHHHHHHHHHHHhh--CCCceEEEEECCccCCCCCcCCCH
Confidence 421 11111 11111100 011122322 12222322 246899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCccccc
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG 345 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~ 345 (474)
+||++|+++|++||++||+||||+|| |+|.+|+++++|+.||++|+||++++|+|+|++++++++++.+. ...+.+
T Consensus 240 ~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~G~Pi~av~~~~~i~~~~~---~~~~~~ 316 (443)
T PRK06058 240 GFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAGGLPLSAVTGRAEIMDAPH---PGGLGG 316 (443)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccCCCccEEEEEcHHHHhhcc---CCCCCC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999886 345788
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchH
Q 011959 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (474)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (474)
||++||++|++++++|+.++++++.+++++++++|+++|+++..+++++.++++.|+|+++++.++.. ..++..
T Consensus 317 T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~------~~~~~~ 390 (443)
T PRK06058 317 TYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGT------TEPDAE 390 (443)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCCC------CCCcHH
Confidence 99999999999999999998899999999999999999999888889999999999999999975421 123445
Q ss_pred HHHHHHHHHHHCCeEecccCC--cceEE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 426 KFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 426 ~~~~~~~~l~~~Gv~v~~~~~--~~~~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
....+.+.|+++||++.+.+. +.+++ ++++|+++|++++++|+++++++
T Consensus 391 ~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~~ 443 (443)
T PRK06058 391 LTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALADL 443 (443)
T ss_pred HHHHHHHHHHHCCeEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHhC
Confidence 567788999999999987542 34555 79999999999999999999875
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=498.92 Aligned_cols=410 Identities=45% Similarity=0.687 Sum_probs=353.7
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-
Q 011959 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG- 131 (474)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~- 131 (474)
+.+....+...++++.....|....+.++|+++++++|+++||.||++||||+++||+..+||+||+|.+++.+|+.+.
T Consensus 10 ~~~~~~~~~~~~~~i~~~~~~~~~t~a~~pv~~~~gkg~kl~D~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~ 89 (433)
T KOG1401|consen 10 SEDASNAASVSMPGIVEEKTRIVSTYARYPVVIESGKGSKLFDPDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLG 89 (433)
T ss_pred CcccccchhhccccccccceEEeeecCCCceeeecceeeeeecCCcceeeeeccceeccccCCCCHHHHHHHHHHHhhhe
Confidence 4445555666778888777788888888899999999999999999999999999999999999999999999999985
Q ss_pred C-CCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcE------EEEEeCCCCCCchhHHHhc
Q 011959 132 T-SFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRER------IIKFEGCYHGHADPFLVKA 202 (474)
Q Consensus 132 ~-~~~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~------ii~~~~~yhg~~~~~~~~~ 202 (474)
. ..++......++++.+.+... +.++|+|+|||||||+.|||+||.++..+. +|.|+++|||.+.++++.+
T Consensus 90 hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~ 169 (433)
T KOG1401|consen 90 HSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVT 169 (433)
T ss_pred eccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhh
Confidence 2 233444447889999888774 689999999999999999999999976544 9999999999999999988
Q ss_pred CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCE
Q 011959 203 GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGAL 282 (474)
Q Consensus 203 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~l 282 (474)
+...+. .|+.+- ..++..+++||..+++++++.+.+++++||+||++|+||.+++.++|++.|+++|+++|++
T Consensus 170 ~~s~y~--~~~~p~-----~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl 242 (433)
T KOG1401|consen 170 GNSKYG--LPFDPI-----APDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVL 242 (433)
T ss_pred cccccC--CCCCCC-----CCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCce
Confidence 665443 233332 3358889999999999999999889999999999999999999999999999999999999
Q ss_pred EEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHH
Q 011959 283 LIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 361 (474)
Q Consensus 283 lI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal 361 (474)
||+|||+||| |.|..|++++++++|||+|++|.|+||+|+|++++++++++.+.+...++|++||++||++|.++..+|
T Consensus 243 ~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l 322 (433)
T KOG1401|consen 243 LIFDEVQTGLGRLGYGWAQEYFGVTPDITTVAKPLGGGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVL 322 (433)
T ss_pred EEeehhhhCccccchHHHHHHhCcCCcceeehhhccCCceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999999998777889999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE-eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeE
Q 011959 362 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (474)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (474)
+.+.+++.++++.+.++.|++.|.+...+.+..... .+.|+++++++..+ +..+.+...........+...+++.|++
T Consensus 323 ~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p-~~~~~d~~~~~~ll~~~~~~~~~~~gv~ 401 (433)
T KOG1401|consen 323 DELKDPETLKNVSKIGKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGP-VYKFADAAREQGLLILTLGKGLLEEGVR 401 (433)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHhccCCCceeeeeeeEEEEEEEEeec-hhhhhhhhhhhhHHHHHHhcccccceEE
Confidence 999999999999999999999999998888766665 89999999998653 3333333333444555566677788999
Q ss_pred ecccCCcceEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 441 FAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 441 v~~~~~~~~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+.|. ..++..+|+|.++++++++.+++.++
T Consensus 402 i~P~----~~l~~~~~~E~i~~~l~i~~~~l~~~ 431 (433)
T KOG1401|consen 402 IAPI----YLLTVEHTPEVIQRLLTILEKVLSAL 431 (433)
T ss_pred Eecc----ccccccCcHHHHHHHHHHHHHHHHHh
Confidence 9882 23456778999999999999998764
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-68 Score=536.14 Aligned_cols=383 Identities=25% Similarity=0.368 Sum_probs=320.0
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCCC-C-
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVPS-I- 155 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~~-~- 155 (474)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+++|+++... .++.++...+|+++|.+..|. .
T Consensus 45 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~ 124 (464)
T PRK06938 45 IPLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLPEAFA 124 (464)
T ss_pred CCceEEeccccEEEeCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHhCccccc
Confidence 48999999999999999999999999999999999999999999999986321 245788899999999999873 2
Q ss_pred --CeEEEe-CCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCC
Q 011959 156 --EMVRFV-NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN 231 (474)
Q Consensus 156 --~~v~~~-~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ 231 (474)
++++|+ |||+||++.|+|+||.+++|.+||.++++|||++.++++.++.......+ +..+++ ..+.+|++
T Consensus 125 ~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~------~~~~~p~~ 198 (464)
T PRK06938 125 REAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGV------QFLPYPYD 198 (464)
T ss_pred ccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCc------EEeCCCcc
Confidence 477776 89999999999999999999999999999999999999887753222111 111111 12222322
Q ss_pred ---------------CHHHHHHHHhcC---CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-
Q 011959 232 ---------------DVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 292 (474)
Q Consensus 232 ---------------d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~- 292 (474)
+++.+++++++. ++++++||+||+++++|.++|+++||++|+++|++||++||+|||+|||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfG 278 (464)
T PRK06938 199 YRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFG 278 (464)
T ss_pred ccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 267788888743 2479999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 293 RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 293 r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
|+|.+|+++++|+.||++|+||+++||+|+|++++++++ +.+. ...+++||++||++|++++++|++++++++.++
T Consensus 279 RtG~~~a~e~~gv~PDiv~~gKglggG~PlsAv~~~~~~-~~~~---~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~ 354 (464)
T PRK06938 279 RTGKMFAFEHAGIIPDVVVLSKAIGGSLPLAVVVYREWL-DTWQ---PGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEH 354 (464)
T ss_pred cCcHHHHHHhcCCCCCEEEeeccccCCCceEEEeehhHh-hccC---CCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999999999999999885 6554 346889999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCC-CcCcccccccchHHHHHHHHHHHHCCeEecccC--Ccce
Q 011959 373 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAG 449 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~ 449 (474)
+++++++|+++|+++..+++++.+++|.|+|++++|.++. ..++......+......+.+.|+++|+++.+.+ .+.+
T Consensus 355 ~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~~~l 434 (464)
T PRK06938 355 AAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRHGSVV 434 (464)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCCCCCEE
Confidence 9999999999999998889999999999999999996532 111111111123445678899999999998754 2344
Q ss_pred E--EecCCcHHHHHHHHHHHHHHHhh
Q 011959 450 F--TSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 450 ~--~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+ +++++|++|+++++++|++++++
T Consensus 435 ~~~Ppl~it~~eid~~~~~l~~~l~~ 460 (464)
T PRK06938 435 RFLPPLIITAEQIDEVAEIFAEAVAA 460 (464)
T ss_pred EEECCCccCHHHHHHHHHHHHHHHHH
Confidence 4 37999999999999999999875
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-68 Score=534.75 Aligned_cols=373 Identities=27% Similarity=0.386 Sum_probs=327.5
Q ss_pred CCCeEEEeecc-CEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCC-CC
Q 011959 80 GQPIVFDSVKG-SHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVP-SI 155 (474)
Q Consensus 80 ~~p~~~~~~~G-~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~-~~ 155 (474)
.+|+++.+++| +|+||.|||+||||.+|+|+.++||+||+|++|+++|++++..+ +.+++...+|+++|++..| +.
T Consensus 62 ~~~~~~~~~~G~~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~~ 141 (459)
T PRK11522 62 DYGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKL 141 (459)
T ss_pred CCCeeEEeccCeEEEEECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCCC
Confidence 35889999999 99999999999999999999999999999999999999986433 3568889999999999998 47
Q ss_pred CeEEEeCCHHHHHHHHHHHhHhhcC---CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC
Q 011959 156 EMVRFVNSGTEACMGVLRLARAFTG---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 156 ~~v~~~~sGseA~~~al~~ar~~~~---~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 232 (474)
++++|+|||+||++.|+|+||.+++ |.+||.++++|||++.++++.++...... +..+.. ..+..+|+||
T Consensus 142 ~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~--~~~~~~-----~~~~~~~~~d 214 (459)
T PRK11522 142 KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRK--PFMPLL-----PGFRHVPFGN 214 (459)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCccccc--CCCCCC-----CCCcccCCCC
Confidence 8999999999999999999999985 67899999999999999999887643321 111121 2356789999
Q ss_pred HHHHHHHHhc---CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCc
Q 011959 233 VSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 308 (474)
Q Consensus 233 ~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pd 308 (474)
.+++++.++. +++++++||+||+++++|.+.|+++||++|+++|++||++||+||||+|| |+|.+|+++++|+.||
T Consensus 215 ~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PD 294 (459)
T PRK11522 215 IEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPD 294 (459)
T ss_pred HHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCC
Confidence 9999998863 34679999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred eeehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 011959 309 LTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 309 i~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (474)
++||||++++| +|+|++++++++++.+.. .+..+++||++||++|++++++|+.++++++.+++++++++|+++|+++
T Consensus 295 ivt~gK~lggG~~Pigav~~~~~i~~~~~~-~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l 373 (459)
T PRK11522 295 ILCLAKALGGGVMPIGATIATEEVFSVLFD-NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQL 373 (459)
T ss_pred EEEechhhhCCCccceeEEEcHHHHHHhcc-CCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 699999999999988752 2456889999999999999999999998899999999999999999999
Q ss_pred hhhcC-CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceE--EecCCcHHHHHH
Q 011959 388 GKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGF--TSLAHSSDDIQH 462 (474)
Q Consensus 388 ~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~--~~~~~t~e~i~~ 462 (474)
..+++ ++.++++.|+|+++++.++ +....+.+.|+++||++.+.. ...++ +++++|++|||+
T Consensus 374 ~~~~~~~i~~VrG~Gl~~giel~~~-------------~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~ 440 (459)
T PRK11522 374 AREYPDLVQEARGKGMLMAIEFVDN-------------EIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQ 440 (459)
T ss_pred HHhCCCceeeEEeceeEEEEEecCc-------------hHHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHH
Confidence 88887 7889999999999999642 224578899999999997653 23444 479999999999
Q ss_pred HHHHHHHHHhh
Q 011959 463 TITAAEKVLRQ 473 (474)
Q Consensus 463 ~l~~l~~~~~~ 473 (474)
++++|++++++
T Consensus 441 ~l~~l~~~l~~ 451 (459)
T PRK11522 441 VLKAARKALAA 451 (459)
T ss_pred HHHHHHHHHHH
Confidence 99999998865
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=533.34 Aligned_cols=390 Identities=25% Similarity=0.302 Sum_probs=328.8
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHhhCC--C
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVP--S 154 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~----~~~~~~~~~~la~~l~~~~~--~ 154 (474)
.|+++++++|+|+||.|||+||||.++++++++||+||+|.+|+++|++++.. .+..++...+|+++|++.+| +
T Consensus 24 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~ 103 (449)
T PRK07481 24 PPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEG 103 (449)
T ss_pred CCceEEeccccEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCC
Confidence 48999999999999999999999999999999999999999999999998542 24578899999999999984 4
Q ss_pred CCeEEEeCCHHHHHHHHHHHhHhhc------CCcEEEEEeCCCCCCchhHHHhcCCCCccCC-CCCCCCCCCCCCCceEE
Q 011959 155 IEMVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDSPGVPKGATYETLT 227 (474)
Q Consensus 155 ~~~v~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~-~~~~~g~~~~~~~~~~~ 227 (474)
.++++|++||+||++.|+|+||.++ +|.+||.++++|||++.+++..++....... .|..+++........+.
T Consensus 104 ~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 183 (449)
T PRK07481 104 MRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYR 183 (449)
T ss_pred CCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccc
Confidence 6899999999999999999999985 6889999999999999999987765432211 13334444333334455
Q ss_pred ccCC--CHHHH--------HHHHh-cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC
Q 011959 228 APFN--DVSAL--------ENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 295 (474)
Q Consensus 228 ~~~~--d~~~l--------e~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g 295 (474)
+||| |.+.+ |++|. ++++++++||+||+++++|.+.|+++||++|+++|++||++||+|||+||| |+|
T Consensus 184 ~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG 263 (449)
T PRK07481 184 NPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG 263 (449)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCc
Confidence 5676 55443 44444 345789999999999999999999999999999999999999999999999 999
Q ss_pred CCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC----CCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 296 YGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
.+|+++++|+.||++|+||+++|| +|+|++++++++++.+... +...|++||++||++|++++++|+++++++++
T Consensus 264 ~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~ 343 (449)
T PRK07481 264 SWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLP 343 (449)
T ss_pred hhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999 5999999999999988632 23468899999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCC-cCcccccccchHHHHHHHHHHHHCCeEecccCCcce
Q 011959 371 EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV-YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (474)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 449 (474)
+++++++++|++.|+++..+++++.++++.|+|++++|..+.. .+. ..+.......+.+.|+++||++.+.+. .+
T Consensus 344 ~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~Gvl~~~~g~-~i 419 (449)
T PRK07481 344 ANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREP---IDPSKGYANAVADVARENGVLVRPSGT-KI 419 (449)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCC---CCchhHHHHHHHHHHHhCCeEEEecCC-EE
Confidence 9999999999999999988889999999999999999964321 110 001123456788899999999988753 34
Q ss_pred EE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 450 FT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 450 ~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
++ ++++|++|||+++++|+++++++
T Consensus 420 ~l~Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 420 ILSPPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 44 58899999999999999998764
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=534.16 Aligned_cols=389 Identities=26% Similarity=0.395 Sum_probs=321.0
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCCCCC-
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVPSIE- 156 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~~~~- 156 (474)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|++++.. ..++++...+|+++|.+.+|+.+
T Consensus 40 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~ 119 (459)
T PRK06931 40 LPLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPGQGK 119 (459)
T ss_pred CCceEEeccccEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHHhCCCccc
Confidence 48999999999999999999999999999999999999999999999987432 22578889999999999997432
Q ss_pred ---eEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCC-
Q 011959 157 ---MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN- 231 (474)
Q Consensus 157 ---~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~- 231 (474)
.++|+|||+||++.|||+||.+++|.+||.++++|||++.++++.++.......+ |..+++......+.+.+|++
T Consensus 120 ~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (459)
T PRK06931 120 EYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGI 199 (459)
T ss_pred cceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccC
Confidence 3466699999999999999999999999999999999999999887754322111 22333332223334444554
Q ss_pred ----CHHHH----HHHHhc---CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc
Q 011959 232 ----DVSAL----ENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 299 (474)
Q Consensus 232 ----d~~~l----e~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~ 299 (474)
+.+.+ ++.+.+ .++++++||+||+++++|.+.|+++||++|+++|++||++||+|||+||| |+|.+|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a 279 (459)
T PRK06931 200 GGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFA 279 (459)
T ss_pred CchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHH
Confidence 23333 344432 34579999999999999999999999999999999999999999999999 9999999
Q ss_pred ccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 011959 300 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 379 (474)
Q Consensus 300 ~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 379 (474)
++++|+.||++|+||+++||+|+|++++++++ +.+. ...+++||++||++|++++++|++++++++++++++++++
T Consensus 280 ~~~~gv~PDivt~gK~l~gG~Pi~av~~~~~~-~~~~---~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~ 355 (459)
T PRK06931 280 FEHAGIEPDIIVMSKAVGGGLPLAVLGIKKEF-DAWQ---PGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEW 355 (459)
T ss_pred hhhcCCCCCEEEecccccCCcceeeeeeHHHH-hhcc---CCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999888774 6664 3458899999999999999999999989999999999999
Q ss_pred HHHHHHHHhhhcCCeeEEeeeceeEEEEEecCC-CcCcccccccchHHHHHHHHHHHHCCeEecccCC--cceE--EecC
Q 011959 380 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGF--TSLA 454 (474)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~--~~~~ 454 (474)
|+++|+++..+++++.+++|.|+|+++++.++. ..++......+......+.+.|+++||++.+.+. +.++ ++++
T Consensus 356 l~~~L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~ 435 (459)
T PRK06931 356 LKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLL 435 (459)
T ss_pred HHHHHHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCC
Confidence 999999998889999999999999999997532 1111111112334556788999999999976542 3344 5899
Q ss_pred CcHHHHHHHHHHHHHHHhh
Q 011959 455 HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 455 ~t~e~i~~~l~~l~~~~~~ 473 (474)
+|++|||+++++|++++++
T Consensus 436 it~~eid~~~~~l~~~l~~ 454 (459)
T PRK06931 436 ITQAECEEFIDRFEQALLA 454 (459)
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999865
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=526.59 Aligned_cols=396 Identities=22% Similarity=0.317 Sum_probs=330.8
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHh
Q 011959 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (474)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 130 (474)
+++++++++++++++++.... ..|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|+++
T Consensus 13 ~~s~~~~~~~~~~~~~~~~~~--------~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~ 84 (457)
T PRK05639 13 PKAKELIEREKRVLSPGIGVK--------LFPLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVAL 84 (457)
T ss_pred CCHHHHHHHHHHhhccccCcC--------CCCceEEeeecCEEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHh
Confidence 356678888878877664211 138999999999999999999999999999999999999999999999998
Q ss_pred cCC--CC-CCCHHHHHHHHHHHhhCCC-CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCC
Q 011959 131 GTS--FG-APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (474)
Q Consensus 131 ~~~--~~-~~~~~~~~la~~l~~~~~~-~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (474)
... .. .+++...+|+++|++..|. .++++|+|||+||++.|+|+||.+++|.+||.++++|||++.+++..++...
T Consensus 85 ~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~ 164 (457)
T PRK05639 85 IQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQS 164 (457)
T ss_pred ccccccCccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCc
Confidence 532 22 3467889999999999984 5899999999999999999999999999999999999999999998776421
Q ss_pred -ccCCC-CCCCCCCCCCCCceEEccCC-------------CH--------HHHHHHHhc---CCCCeEEEEEccccCCCC
Q 011959 207 -ATLGL-PDSPGVPKGATYETLTAPFN-------------DV--------SALENLFEN---NKGEIAAIILEPVVGNSG 260 (474)
Q Consensus 207 -~~~~~-~~~~g~~~~~~~~~~~~~~~-------------d~--------~~le~~l~~---~~~~~a~vi~ep~~~~~G 260 (474)
....+ |..+ ++..+|++ |. +.+++.+.. .++++++||+||+++++|
T Consensus 165 ~~~~~~~~~~~--------~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG 236 (457)
T PRK05639 165 SQKRGFSPLMP--------NVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAG 236 (457)
T ss_pred ccccCCCCCCC--------CceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCC
Confidence 11111 1111 12333332 22 245555432 357899999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCC
Q 011959 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG 339 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~ 339 (474)
.+.|+++||++|+++|++||++||+||||+|| |+|.+|+++++|+.||++||||+++||+|+|++++++++++...
T Consensus 237 ~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~pi~av~~~~~i~~~~~--- 313 (457)
T PRK05639 237 IVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASGMGLSGVIGRKELMDLTS--- 313 (457)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEechhhcCCCcceeEEehHHHHhhcC---
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999998432
Q ss_pred CcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccc
Q 011959 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 419 (474)
Q Consensus 340 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~ 419 (474)
..+.+|+++||++|++++++|+.++++++++++++++++|+++|+++..+++++.+++|.|+|+++++..+..
T Consensus 314 -~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~------ 386 (457)
T PRK05639 314 -GSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENG------ 386 (457)
T ss_pred -CCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCC------
Confidence 1245799999999999999999999999999999999999999999988899999999999999999964321
Q ss_pred cccchHHHHHHHHHHHHCCeEecccCC--cceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 420 KKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.++......+.+.|+++|+++.+.+. +.+++ ++++|++|+|+++++|++++++
T Consensus 387 -~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~ 443 (457)
T PRK05639 387 -KPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKD 443 (457)
T ss_pred -CCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 13344557889999999999987642 44554 7999999999999999999864
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-67 Score=529.48 Aligned_cols=383 Identities=22% Similarity=0.296 Sum_probs=321.8
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHhhCCC-CC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVPS-IE 156 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~la~~l~~~~~~-~~ 156 (474)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|++++. ..++.++...+|+++|++..|+ .+
T Consensus 36 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~ 115 (453)
T PRK06943 36 PLLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGGTLG 115 (453)
T ss_pred CCceEEecccCEEEeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 3889999999999999999999999999999999999999999999999853 2346788999999999999874 57
Q ss_pred eEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEcc
Q 011959 157 MVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP 229 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~ 229 (474)
+++|++||+||++.|+|+||.+ ++|.+||.++++|||++.++++.++.......+ |...++......+....+
T Consensus 116 ~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 195 (453)
T PRK06943 116 HAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGAR 195 (453)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccc
Confidence 9999999999999999999654 578999999999999999999988754332211 111111000000000001
Q ss_pred ---------CCCHHHHHHHHhcCCCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc
Q 011959 230 ---------FNDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 298 (474)
Q Consensus 230 ---------~~d~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~ 298 (474)
.+++++++++++++++++++||+|| +++++|.+.|+++||++|+++|++||++||+|||+||| |+|.+|
T Consensus 196 ~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~f 275 (453)
T PRK06943 196 PGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFF 275 (453)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchh
Confidence 1346888888887778999999999 59999999999999999999999999999999999999 999999
Q ss_pred cccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC---CCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHH
Q 011959 299 AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 374 (474)
Q Consensus 299 ~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 374 (474)
+++++|+.||++|+||+++|| +|+|++++++++++.+... ..+.+++||++||++|++++++|++++++++.++++
T Consensus 276 a~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~ 355 (453)
T PRK06943 276 ACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNA 355 (453)
T ss_pred HHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999 5999999999999988632 134588899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--e
Q 011959 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--S 452 (474)
Q Consensus 375 ~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~ 452 (474)
+++++|+++|+++. +++.+.++++.|+|+++++..+. .++......+.+.|+++||++.+.+ ..+++ +
T Consensus 356 ~~G~~l~~~L~~l~-~~~~v~~vrG~Gl~~gvel~~~~--------~~~~~~~~~i~~~~~~~Gll~~~~g-~~l~~~Pp 425 (453)
T PRK06943 356 RKSARLRAALAPLA-AHPQVRHLRQRGTIFAFDVALDG--------DAARTFSRRFFEAALERELLLRPIG-TTVYLMPP 425 (453)
T ss_pred HHHHHHHHHHHHHh-cCCCEEeEeccccEEEEEEccCC--------CcchHHHHHHHHHHHHCCcEEEecC-CEEEEeCC
Confidence 99999999999984 57778899999999999997421 1122335678899999999998765 34554 5
Q ss_pred cCCcHHHHHHHHHHHHHHHhh
Q 011959 453 LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+++|++|||+++++|++++++
T Consensus 426 l~it~~eid~~~~~l~~al~~ 446 (453)
T PRK06943 426 YVLDDDEIAWLAERTRATLDA 446 (453)
T ss_pred CcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-67 Score=525.42 Aligned_cols=368 Identities=27% Similarity=0.392 Sum_probs=321.1
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhhCCC-CCeE
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPS-IEMV 158 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~~-~~~v 158 (474)
++++.+++|+|+||.|||+||||.+++++.++||+||+|++|+.+|+++..... ..++...+|+++|++.+|+ .+++
T Consensus 58 ~~~~~~~~g~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v 137 (442)
T TIGR03372 58 AVEWQAGGLNTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLKYS 137 (442)
T ss_pred eeEEEeCCeeEEEECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCCcCEE
Confidence 445677777999999999999999999999999999999999999999854332 4588899999999999984 5899
Q ss_pred EEeCCHHHHHHHHHHHhHhhc---CCcEEEEEeCCCCCCchhHHHhcCCCCccCC-CCCCCCCCCCCCCceEEccCCCHH
Q 011959 159 RFVNSGTEACMGVLRLARAFT---GRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDSPGVPKGATYETLTAPFNDVS 234 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~---~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~-~~~~~g~~~~~~~~~~~~~~~d~~ 234 (474)
+|+|||+||++.|+|+||.++ ++.+||.++++|||++.+++..++....... .|.. ..+..+|++|++
T Consensus 138 ~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~--------~~~~~~p~~d~~ 209 (442)
T TIGR03372 138 FFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLL--------PGFHHVAFGDIE 209 (442)
T ss_pred EEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCC--------CCCEEeCCCCHH
Confidence 999999999999999999996 7889999999999999999988875332211 1111 235778999999
Q ss_pred HHHHHHhc---CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee
Q 011959 235 ALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310 (474)
Q Consensus 235 ~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~ 310 (474)
.+++.+++ +++++++||+||+++++|.+.|+++||++|+++|++||+++|+||||+|| |+|.+|+++++|+.||++
T Consensus 210 ~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDiv 289 (442)
T TIGR03372 210 AMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDIL 289 (442)
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCee
Confidence 98888753 45689999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh
Q 011959 311 TLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK 389 (474)
Q Consensus 311 t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 389 (474)
||||++++| +|+|++++++++++.+.. ....+++||++||++|++++++|+.++++++.+++++++++|+++|+++..
T Consensus 290 t~gK~lg~G~~Pigavv~~~~i~~~~~~-~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~ 368 (442)
T TIGR03372 290 CLAKALGGGVMPIGATIATEAVFSVLFD-NPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAA 368 (442)
T ss_pred eehhhhcCCcccceEEEecHHHHHhhhc-cCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 699999999999998842 245678999999999999999999999889999999999999999999988
Q ss_pred hcC-CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC--cceE--EecCCcHHHHHHHH
Q 011959 390 KAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGF--TSLAHSSDDIQHTI 464 (474)
Q Consensus 390 ~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~--~~~~~t~e~i~~~l 464 (474)
+++ .+.++++.|+|+++++.++ .....+.+.|+++||++.+.+. +.++ +++++|++++|+++
T Consensus 369 ~~~~~i~~vRG~Gl~~giel~~~-------------~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~ 435 (442)
T TIGR03372 369 EYPDLIIEARGKGLLMAIEFRDN-------------EIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVI 435 (442)
T ss_pred hCCCceEEEecceEEEEEEeCCh-------------HHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHH
Confidence 888 7889999999999999642 2336788999999999976532 3454 47999999999999
Q ss_pred HHHHHHH
Q 011959 465 TAAEKVL 471 (474)
Q Consensus 465 ~~l~~~~ 471 (474)
++|++++
T Consensus 436 ~~l~~~~ 442 (442)
T TIGR03372 436 KAAKDAL 442 (442)
T ss_pred HHHHHhC
Confidence 9999864
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-67 Score=528.98 Aligned_cols=416 Identities=23% Similarity=0.307 Sum_probs=336.2
Q ss_pred hHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc
Q 011959 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG 131 (474)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~ 131 (474)
.+.++.++.+++++.+.... +.+. ...|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l 88 (460)
T PRK06916 12 TYEELSEKNKAYVWHPFTQM-KDYL--EEDPLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKI 88 (460)
T ss_pred ChHHHHHHHhhccccccccc-cccc--cCCCeeEEeccccEEEeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhC
Confidence 44677777777665443311 1111 12489999999999999999999999999999999999999999999999984
Q ss_pred C---CCCCCCHHHHHHHHHHHhhCCC-CCeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHh
Q 011959 132 T---SFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVK 201 (474)
Q Consensus 132 ~---~~~~~~~~~~~la~~l~~~~~~-~~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~ 201 (474)
. .++..++...+|+++|++.+|. .++++|+|||+||++.|+|+||.+ ++|.+||.++++|||++.++++.
T Consensus 89 ~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~ 168 (460)
T PRK06916 89 AHSTLLGLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSV 168 (460)
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhc
Confidence 2 2345788899999999999984 689999999999999999999985 67899999999999999999988
Q ss_pred cCCCCccCCC-CCCCCCCCCCCCceEEccC---------CCHHHHHHHHhcCCCCeEEEEEcc-ccCCCCcccCCHHHHH
Q 011959 202 AGSGVATLGL-PDSPGVPKGATYETLTAPF---------NDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLN 270 (474)
Q Consensus 202 ~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~---------~d~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l~ 270 (474)
++.......+ |...++......+.+..++ ++++.++++++++++++++||+|| +++++|.+.|+++||+
T Consensus 169 s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~ 248 (460)
T PRK06916 169 GAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLK 248 (460)
T ss_pred cCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHH
Confidence 7754322111 1111111000011111111 146778888887778999999999 6999999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC----CCcccc
Q 011959 271 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQA 344 (474)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~----~~~~~~ 344 (474)
+|+++|++||++||+|||+||| |+|.+|+++++|+.||++|+||+++|| +|+|++++++++++.+... ....++
T Consensus 249 ~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~ 328 (460)
T PRK06916 249 GLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHG 328 (460)
T ss_pred HHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccC
Confidence 9999999999999999999999 999999999999999999999999999 5999999999999887531 235678
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccch
Q 011959 345 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSET 424 (474)
Q Consensus 345 ~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~ 424 (474)
+||++||++|++++++|+.+++++++++++++++++++.|+++. +++.+.++++.|+|+++++.++... ......+.
T Consensus 329 ~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~-~~~~v~~vrG~Glm~giel~~~~~~--~~~~~~~~ 405 (460)
T PRK06916 329 HSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLF-ALKHVGDIRQLGLMVGIELVKNKET--KEPFEWTE 405 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhh-cCCCeEEeecCCceeeEEeeccccc--ccCCCchh
Confidence 89999999999999999999989999999999999999999985 4788899999999999999754211 00011122
Q ss_pred HHHHHHHHHHHHCCeEecccCCcceE--EecCCcHHHHHHHHHHHHHHHhhC
Q 011959 425 TKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 425 ~~~~~~~~~l~~~Gv~v~~~~~~~~~--~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
.....+.+.|+++||++.+.+ ..++ +++++|++||++++++|+++++++
T Consensus 406 ~~~~~i~~~~~~~Gvl~~~~g-~~l~~~Ppl~it~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06916 406 RVGVQVCKRSRELGMLTRPLG-NTIVFMPPLASTIDELDEMLRILYKAISDV 456 (460)
T ss_pred hHHHHHHHHHHHCCeEEEecC-CEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 234678899999999998865 3343 379999999999999999998763
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-66 Score=525.85 Aligned_cols=388 Identities=24% Similarity=0.317 Sum_probs=319.9
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHhhCCC----
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVPS---- 154 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~la~~l~~~~~~---- 154 (474)
|+.+++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|+++.. .+++.++...+|+++|.+.+|.
T Consensus 47 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~ 126 (472)
T PRK08742 47 LVPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGR 126 (472)
T ss_pred CeeEEecccCEEEeCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCcccC
Confidence 578999999999999999999999999999999999999999999998642 2346788899999999999873
Q ss_pred --CCeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCce
Q 011959 155 --IEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYET 225 (474)
Q Consensus 155 --~~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~ 225 (474)
.++|+|++||+||++.|+|+||.+ ++|.+||.++++|||++.++++.++.......+ |..+++......+.
T Consensus 127 ~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~ 206 (472)
T PRK08742 127 APLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDA 206 (472)
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCc
Confidence 579999999999999999999998 568899999999999999999987754322111 11111111101111
Q ss_pred EEccCC---------CHHHHHHHHhcCCCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc
Q 011959 226 LTAPFN---------DVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294 (474)
Q Consensus 226 ~~~~~~---------d~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~ 294 (474)
+..++. +++.+++++.++++++++||+|| +++++|.+.|+++||++|+++|++||++||+|||+||| |+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRt 286 (472)
T PRK08742 207 YLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRT 286 (472)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCC
Confidence 111111 35777888876667999999999 69999999999999999999999999999999999999 99
Q ss_pred CCCccccccCCCCceeehhhhcCCCc-ceEEEEecHHHHHhhcCC---CCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 295 AYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 295 g~~~~~~~~g~~pdi~t~sK~l~~G~-~iG~~~~~~~i~~~~~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
|.+|+++++|+.||++|+||+++||+ |+|++++++++++.+... ..+.|++||++||++|++++++|++++++++.
T Consensus 287 G~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~ 366 (472)
T PRK08742 287 GTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVI 366 (472)
T ss_pred ccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHH
Confidence 99999999999999999999999995 999999999999987531 23468899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceE
Q 011959 371 EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF 450 (474)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~ 450 (474)
+++++++++|++.++.+ .+++.+.++++.|+|++++|..+.... ....++......+.+.|+++||++.+.+ +.++
T Consensus 367 ~~~~~~g~~l~~~~~~~-~~~~~i~dvRG~Gl~~giel~~~~~~~--~~~~~~~~~~~~~~~~~~~~Gll~~~~g-~vi~ 442 (472)
T PRK08742 367 ARNQPTAARMTQLAAQI-GEHPHVADVRQAGMVVAFELTRGGNKR--TPFPPAARVGLHAYRAALARGVVLRPLG-DVLY 442 (472)
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCeeeEeccceEEEEEeccCcccc--ccCCchhHHHHHHHHHHHHCCeEEEecC-CEEE
Confidence 99999999999777664 668889999999999999997532110 0001122234677889999999998865 4555
Q ss_pred E--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 451 T--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 451 ~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+ ++++|++||++++++|++++++
T Consensus 443 ~~PpL~it~~ei~~~~~~l~~~l~~ 467 (472)
T PRK08742 443 WMPPYCVDEAQLALLADTTRHAIDE 467 (472)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHH
Confidence 4 7999999999999999999875
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=525.99 Aligned_cols=389 Identities=19% Similarity=0.294 Sum_probs=324.1
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHhhCC-CCCe
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVP-SIEM 157 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~la~~l~~~~~-~~~~ 157 (474)
|+++++++|+|+||.|||+||||.+++|+.++||+||+|.+|+++|++++. ..++.++...+|+++|++..| +.++
T Consensus 30 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~ 109 (466)
T PRK07030 30 LIPIRRGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSR 109 (466)
T ss_pred CceEEeeeccEEEECCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCcCE
Confidence 568999999999999999999999999999999999999999999999853 235678899999999999988 5789
Q ss_pred EEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEc--
Q 011959 158 VRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA-- 228 (474)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~-- 228 (474)
|+|+|||+||++.|+|+||.+ ++|.+||.+.++|||++.++++.++.......+ |..+++......+.+..
T Consensus 110 v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~ 189 (466)
T PRK07030 110 CFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPE 189 (466)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCcccccc
Confidence 999999999999999999887 578899999999999999999887754322111 11111111100111111
Q ss_pred -------cCCCHHHHHHHHhcCCCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc
Q 011959 229 -------PFNDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 299 (474)
Q Consensus 229 -------~~~d~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~ 299 (474)
+.++++.+++++.++++++++||+|| +++++|.+.++++|+++|+++|++||++||+|||+||| |+|.+|+
T Consensus 190 ~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a 269 (466)
T PRK07030 190 GMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFA 269 (466)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchH
Confidence 12346778888887778999999999 79999999999999999999999999999999999999 9999999
Q ss_pred ccccCCCCceeehhhhcCCCc-ceEEEEecHHHHHhhcCC----CCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHH
Q 011959 300 QEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 374 (474)
Q Consensus 300 ~~~~g~~pdi~t~sK~l~~G~-~iG~~~~~~~i~~~~~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 374 (474)
++++|+.||++|++|+++||+ |+|++++++++++.+... ....|++||++||++|++++++|++++++++.++++
T Consensus 270 ~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~ 349 (466)
T PRK07030 270 CEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNR 349 (466)
T ss_pred HHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999995 999999999999987521 234688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceE--Ee
Q 011959 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TS 452 (474)
Q Consensus 375 ~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~--~~ 452 (474)
+++++|+++|+++. +++.+.++++.|+|+++++..++...- +. ..+......+.+.|+++|+++.+.+ ..++ ++
T Consensus 350 ~~G~~l~~~L~~l~-~~~~v~~vrG~Gl~~gie~~~~~~~~~-~~-~~~~~~~~~i~~~~~~~Gvl~~~~g-~~i~~~Pp 425 (466)
T PRK07030 350 ALARRMAEATAHLA-DHPHVAEVRQTGMILAIEMVQDKASKT-PY-PWQERRGLKVYQHALERGALLRPLG-SVVYFLPP 425 (466)
T ss_pred HHHHHHHHHHHHHh-cCCCEEEeEeceeEEEEEeccCccccc-cC-cchhHHHHHHHHHHHHCCeEEEecC-CEEEEECC
Confidence 99999999999884 688899999999999999975432110 00 0122234578899999999998865 3444 37
Q ss_pred cCCcHHHHHHHHHHHHHHHhhC
Q 011959 453 LAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+++|++||++++++|+++++++
T Consensus 426 l~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 426 YVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred ccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998763
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=524.02 Aligned_cols=385 Identities=23% Similarity=0.309 Sum_probs=322.3
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CC-CCCCHHHHHHHHHHHhhCC-CCC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF-GAPCLLENVLAEMVISAVP-SIE 156 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~-~~~~~~~~~la~~l~~~~~-~~~ 156 (474)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|++++. .. .+.++...+|+++|++..| +.+
T Consensus 12 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 91 (443)
T PRK07483 12 TLPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAGLE 91 (443)
T ss_pred CCceEEeceEEEEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 4899999999999999999999999999999999999999999999999853 22 2467888999999999987 578
Q ss_pred eEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEc-
Q 011959 157 MVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA- 228 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~- 228 (474)
+++|+|||+||++.|+|+||.+ ++|.+||.++++|||++.++++.++.......+ |..+++ ..+..
T Consensus 92 ~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~------~~~~~~ 165 (443)
T PRK07483 92 HVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEA------HHVSPC 165 (443)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCC------EEeCCC
Confidence 9999999999999999999998 678999999999999999999888754322111 111111 01111
Q ss_pred -cCCC--------------HHHHHHHHh-cCCCCeEEEEEccccC-CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 011959 229 -PFND--------------VSALENLFE-NNKGEIAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291 (474)
Q Consensus 229 -~~~d--------------~~~le~~l~-~~~~~~a~vi~ep~~~-~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (474)
+|++ ++++++++. .+++++++||+||+++ ++|.+.|+++||++|+++|+|||++||+|||+||
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 245 (443)
T PRK07483 166 YAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCG 245 (443)
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeC
Confidence 1232 256777664 3457899999999998 5899999999999999999999999999999999
Q ss_pred c-ccCCCccccccCCCCceeehhhhcCCCc-ceEEEEecHHHHHhhcCCC-CcccccCCCCChHHHHHHHHHHHHhcCCC
Q 011959 292 F-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAG-PMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (474)
Q Consensus 292 ~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~-~iG~~~~~~~i~~~~~~~~-~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (474)
| |+|.+|+++++|+.||++|+||+++||+ |+|++++++++++.+.... .+.|++||++||++|++++++|+++++++
T Consensus 246 fGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~ 325 (443)
T PRK07483 246 MGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDG 325 (443)
T ss_pred cccCcHHHHHhhcCCCCCeeeehhhhccCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 9 9999999999999999999999999996 9999999999999886421 24588999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---
Q 011959 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--- 445 (474)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--- 445 (474)
+.+++++++++|+++|+++..+++.+.+++|.|+|+++++.++.... ....++......+.+.|+++||++.+.+
T Consensus 326 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~ 403 (443)
T PRK07483 326 LLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRATK--APFDPALKLHARIKREAMARGLMVYPMGGTI 403 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeeccccc--CCCCchhhHHHHHHHHHHHCCcEEEecCccc
Confidence 99999999999999999988889999999999999999997532110 0001122345678899999999997653
Q ss_pred ----CcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 446 ----FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 ----~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+.+++ ++++|++|||+++++|++++++
T Consensus 404 ~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~ 437 (443)
T PRK07483 404 DGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDA 437 (443)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 134444 7999999999999999999875
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-66 Score=521.72 Aligned_cols=407 Identities=23% Similarity=0.334 Sum_probs=331.3
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHh
Q 011959 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (474)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 130 (474)
.+++++.++.++++..... ...+|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~--------~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~ 73 (445)
T PRK08593 2 SKAHQLIQEDEHYFAKSGR--------IKYYPLVIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADK 73 (445)
T ss_pred chHHHHHHHHHHhhccccc--------cCCCCceEEeeeeCEEEeCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHh
Confidence 3556677776665422110 01138999999999999999999999999999999999999999999999998
Q ss_pred cCCC---CCCCHHHHHHHHHHHhhCCCC--CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCC
Q 011959 131 GTSF---GAPCLLENVLAEMVISAVPSI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG 205 (474)
Q Consensus 131 ~~~~---~~~~~~~~~la~~l~~~~~~~--~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~ 205 (474)
+..+ .+.++...+|+++|++.+|+. ++|+|+|||+||++.|+|+||.+++|.+||.++++|||++.++++.++..
T Consensus 74 ~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~ 153 (445)
T PRK08593 74 FIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGIS 153 (445)
T ss_pred ccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCC
Confidence 6433 246888999999999999843 79999999999999999999999999999999999999999999887742
Q ss_pred C-ccCCC-CCCCCCCCCCCCceEEcc--CCC-------HHHHHHHHhcC--CCCeEEEEEccccCCCCcccCCHHHHHHH
Q 011959 206 V-ATLGL-PDSPGVPKGATYETLTAP--FND-------VSALENLFENN--KGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (474)
Q Consensus 206 ~-~~~~~-~~~~g~~~~~~~~~~~~~--~~d-------~~~le~~l~~~--~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (474)
. ....+ |..+++......+....+ .++ ++++++++.++ ++++++||+||+++++|.+.|+++||++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l 233 (445)
T PRK08593 154 LNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEAL 233 (445)
T ss_pred cccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHH
Confidence 1 11111 212221100000011111 111 24555555432 46899999999999999999999999999
Q ss_pred HHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCCh
Q 011959 273 RRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351 (474)
Q Consensus 273 ~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~ 351 (474)
+++|++||++||+||||+|| |+|.+++++++|+.||++|+||++++|+|+|++++++++++.+.. ..+.+|+++||
T Consensus 234 ~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~G~p~gav~~~~~i~~~~~~---~~~~~T~~~~p 310 (445)
T PRK08593 234 YKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGGMPMSAIVGRKEIMESLEA---PAHLFTTGANP 310 (445)
T ss_pred HHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccCCcccEEEEEcHHHHhhhcc---CCCCCCCCCCH
Confidence 99999999999999999999 999988999999999999999999999999999999999998862 34567999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHH
Q 011959 352 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY 431 (474)
Q Consensus 352 ~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (474)
++|++++++|+.++++++++++++++++|++.|+++..+++++.++++.|+|+++++..++.. ..++......+.
T Consensus 311 l~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~-----~~~~~~~~~~~~ 385 (445)
T PRK08593 311 VSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKL-----KTRDNEAALKIC 385 (445)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCc-----CCCcHHHHHHHH
Confidence 999999999999998899999999999999999999888999999999999999999753211 123445567889
Q ss_pred HHHHHCCeEecccCCcceE--EecCCcHHHHHHHHHHHHHHHhh
Q 011959 432 RGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 432 ~~l~~~Gv~v~~~~~~~~~--~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+.|+++||++.+.+.+.++ +++.+|++||++++++|++++++
T Consensus 386 ~~~~~~Gv~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 429 (445)
T PRK08593 386 NYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFTA 429 (445)
T ss_pred HHHHHCCeEEeccCCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 9999999999776545555 47999999999999999999865
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-66 Score=519.53 Aligned_cols=406 Identities=29% Similarity=0.421 Sum_probs=338.7
Q ss_pred CCchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHH
Q 011959 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127 (474)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~ 127 (474)
+..++|++++++.+++++.+.. ..+|+++++++|+|+||.|||+||||.+++|+.++||+||+|.+|+.+|
T Consensus 12 ~~~~~s~~l~~~~~~~~~~~~~---------~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q 82 (441)
T PRK05769 12 LPGPKAREIIERDEKYLAQSTR---------RWYPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQ 82 (441)
T ss_pred CCCccHHHHHHHHHHhhCcccc---------cCCCeeEEecceEEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHH
Confidence 3345677788877777765421 1148999999999999999999999999999999999999999999999
Q ss_pred HHhcCCC---CCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhc
Q 011959 128 MKKGTSF---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKA 202 (474)
Q Consensus 128 ~~~~~~~---~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~ 202 (474)
++++... .+.++...+|+++|++..| ..++|+|+|||+||++.|+|+||.+++|.+||.++++|||++.++++.+
T Consensus 83 l~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t 162 (441)
T PRK05769 83 AEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLT 162 (441)
T ss_pred HHhccCccCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhc
Confidence 9986433 2457889999999999997 3589999999999999999999999999999999999999999999887
Q ss_pred CCCC-ccCCC-CCCCCCCCCCCCceEEccCC--C--------HHHHHH-HHhc--CCCCeEEEEEccccCCCCcccCCHH
Q 011959 203 GSGV-ATLGL-PDSPGVPKGATYETLTAPFN--D--------VSALEN-LFEN--NKGEIAAIILEPVVGNSGFIAPKPD 267 (474)
Q Consensus 203 g~~~-~~~~~-~~~~g~~~~~~~~~~~~~~~--d--------~~~le~-~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~ 267 (474)
+... ....+ |..+++......+.+..|++ | ++.+++ ++++ +++++++||+||+++++|.+.|+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~ 242 (441)
T PRK05769 163 ASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKN 242 (441)
T ss_pred CCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHH
Confidence 5421 11111 33334433333344455554 1 344666 4432 3568999999999999999999999
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccC
Q 011959 268 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGT 346 (474)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t 346 (474)
||++|+++|++||+++|+||||+|| |+|.+++++++|+.||++||||++++|+|+|++++++++++.+. ..+.+|
T Consensus 243 ~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~~G~p~gav~~~~~i~~~~~----~~~~~T 318 (441)
T PRK05769 243 FFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGGLPLGAVIGRAELMFLPP----GSHANT 318 (441)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEcccccCCcccEEEEEehhhhhcCC----CCCCCC
Confidence 9999999999999999999999999 99998899999999999999999999999999999999986432 357789
Q ss_pred CCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHH
Q 011959 347 LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 426 (474)
Q Consensus 347 ~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 426 (474)
|++||++|++++++|+++++ ++++++++++++|++.|+++..+++++.++++.|+|++++|.+++ ..++...
T Consensus 319 ~~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~-------~~~~~~~ 390 (441)
T PRK05769 319 FGGNPVAAAAALATLEELEE-GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDR-------KEPDPKL 390 (441)
T ss_pred CCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCC-------ccccHHH
Confidence 99999999999999999988 999999999999999999998888989999999999999996532 1233445
Q ss_pred HHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 427 FARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 427 ~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
...+.+.|+++||++.+.+.+.+++ ++++|++|||+++++|+++++++
T Consensus 391 ~~~~~~~~~~~Gil~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 391 RDKVLYEAFKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred HHHHHHHHHhCCcEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5778899999999998876555555 68899999999999999998753
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=518.64 Aligned_cols=419 Identities=21% Similarity=0.283 Sum_probs=337.8
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
..+|.++.++.+++++.++.+. ..+. ...|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+++|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~ 82 (460)
T PRK06541 6 VNSDTDLQALAKRHLWMHFTRH-GAYI--DAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAG 82 (460)
T ss_pred cccHHHHHHHhhcccccCccCc-cccc--cCCCceEEeCcccEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHh
Confidence 3456777777777777655433 1111 113788999999999999999999999999999999999999999999999
Q ss_pred hcC---CCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh---c---CCcEEEEEeCCCCCCchhHH
Q 011959 130 KGT---SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---T---GRERIIKFEGCYHGHADPFL 199 (474)
Q Consensus 130 ~~~---~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~---~---~~~~ii~~~~~yhg~~~~~~ 199 (474)
+.. .+.+.++...+|+++|++..| +.++++|++||+||++.|+|+||.+ + +|.+||.++++|||++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~ 162 (460)
T PRK06541 83 TLAFFPLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGAL 162 (460)
T ss_pred hCcCccccccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhh
Confidence 853 335678889999999999987 4789999999999999999999988 3 47899999999999999999
Q ss_pred HhcCCCCccCC-CCCCCCCCCCCCCceEEcc-CC-C--------HHHHHHHHhc-CCCCeEEEEEccccCCCCcccCCHH
Q 011959 200 VKAGSGVATLG-LPDSPGVPKGATYETLTAP-FN-D--------VSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPD 267 (474)
Q Consensus 200 ~~~g~~~~~~~-~~~~~g~~~~~~~~~~~~~-~~-d--------~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~ 267 (474)
+.++....... .|..+++......+.+..| ++ + ++.+++++++ +++++++||+||+++++|.+.++++
T Consensus 163 s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~ 242 (460)
T PRK06541 163 AITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPG 242 (460)
T ss_pred cCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHH
Confidence 88775432211 1223333222222333333 32 2 3678888864 3568999999999999999999999
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCc-ceEEEEecHHHHHhhcCC-CCcccc
Q 011959 268 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA-GPMYQA 344 (474)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~-~iG~~~~~~~i~~~~~~~-~~~~~~ 344 (474)
||++|+++|++||++||+||||+|| |+|.+|+++++|+.||++||||++++|+ |+|++++++++++.+... ....+.
T Consensus 243 yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~~ 322 (460)
T PRK06541 243 YFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHG 322 (460)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCCCccccC
Confidence 9999999999999999999999999 9999999999999999999999999997 999999999999988643 234567
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCc--Cccccccc
Q 011959 345 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY--NFEDAKKS 422 (474)
Q Consensus 345 ~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~--~~~~~~~~ 422 (474)
+|+++||+++++++++|+.++++++++++++++++|+++|+++.. ++++.++++.|+|++++|.++... ++... ..
T Consensus 323 ~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~-~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~-~~ 400 (460)
T PRK06541 323 YTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLD-LPIVGDVRGDGYFYGIELVKDKATKETFTDD-ES 400 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecceEEEEEEecCcccccCCcch-hh
Confidence 899999999999999999998889999999999999999998865 788889999999999999753211 11000 00
Q ss_pred chHHHHHHHHHHHHCCeEeccc--CCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 423 ETTKFARFYRGMLEEGVYFAPS--QFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 423 ~~~~~~~~~~~l~~~Gv~v~~~--~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+......+.+.|+++||++.+. +.+.+++ ++++|++|||+++++|++++++
T Consensus 401 ~~~~~~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~ 455 (460)
T PRK06541 401 ERLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTE 455 (460)
T ss_pred hhhHHHHHHHHHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1112236788999999999874 3344544 6889999999999999999865
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-66 Score=524.13 Aligned_cols=389 Identities=24% Similarity=0.318 Sum_probs=318.6
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHhhCC--C
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF----GAPCLLENVLAEMVISAVP--S 154 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~----~~~~~~~~~la~~l~~~~~--~ 154 (474)
.|+++++++|+|+||.|||+||||.+++|+++|||+||+|++|+++|++++..+ +.+++...+|+++|.+.++ +
T Consensus 71 ~p~~i~~~~G~~l~D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~ 150 (504)
T PLN02760 71 EPLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARK 150 (504)
T ss_pred CCceEEeeeeeEEEECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCC
Confidence 489999999999999999999999999999999999999999999999985422 3578889999999999864 3
Q ss_pred CCeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEE
Q 011959 155 IEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLT 227 (474)
Q Consensus 155 ~~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~ 227 (474)
.++++|+|||+|||+.|||+||.+ +++.+||.++++|||++..++.++|.......+ +..+++.+......+.
T Consensus 151 ~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~ 230 (504)
T PLN02760 151 MGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWR 230 (504)
T ss_pred CCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccc
Confidence 578999999999999999999876 357899999999999999888877753321111 1111111111111111
Q ss_pred c--cCCC--------HHHHHHHHh-cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC
Q 011959 228 A--PFND--------VSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 295 (474)
Q Consensus 228 ~--~~~d--------~~~le~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g 295 (474)
+ |..+ .++|++++. ++++++++||+||+++++|++.|+++|+++|+++|++||++||+|||+||| |+|
T Consensus 231 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG 310 (504)
T PLN02760 231 FHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLG 310 (504)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccc
Confidence 1 1111 245777664 445689999999999999999999999999999999999999999999999 999
Q ss_pred CCccccccCCCCceeehhhhcCCCc-ceEEEEecHHHHHhhcCC----CCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 296 YGGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~t~sK~l~~G~-~iG~~~~~~~i~~~~~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
.+|+++++|+.||++||||++++|+ |+|++++++++++.+... ..+.+++||++||++|++++++|++++++++.
T Consensus 311 ~~~a~e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~ 390 (504)
T PLN02760 311 TMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIP 390 (504)
T ss_pred hhhHHHhcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999985 999999999999988632 13458899999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceE
Q 011959 371 EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF 450 (474)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~ 450 (474)
+++++++++|+++|+++ .+++++.+++|.|+|+++++.++.... ....++......+.+.|+++||++.+.+ ..++
T Consensus 391 ~~~~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~--~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-~~lr 466 (504)
T PLN02760 391 EHVNKIAPRFQDGIKAF-SGSPIIGEIRGTGLILGTEFVDNKSPN--DPFPAEWGVGAYFGAECKKRGMLVRVAG-DNIM 466 (504)
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCeeeEEeCceEEEEEEecCCccc--ccccchhHHHHHHHHHHHhCCcEEEecC-CEEE
Confidence 99999999999999997 678889999999999999997542110 0011122345678899999999998765 3455
Q ss_pred E--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 451 T--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 451 ~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+ ++++|++|||+++++|++++++
T Consensus 467 l~Ppl~it~eeid~~~~~l~~al~~ 491 (504)
T PLN02760 467 MSPPLIITPEEVDELISIYGKALKA 491 (504)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHH
Confidence 5 5889999999999999999864
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-66 Score=521.57 Aligned_cols=389 Identities=24% Similarity=0.357 Sum_probs=318.2
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCCCC--
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVPSI-- 155 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~~~-- 155 (474)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+++|++++.. ..++++...+|+++|++.+|+.
T Consensus 21 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 100 (442)
T TIGR00709 21 LPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKM 100 (442)
T ss_pred CCceEEeccccEEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCC
Confidence 38899999999999999999999999999999999999999999999988532 2257888999999999999742
Q ss_pred -Ce-EEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCC-
Q 011959 156 -EM-VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN- 231 (474)
Q Consensus 156 -~~-v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~- 231 (474)
.+ ++|+|||+||++.|||+||.+++|.+||.++++|||++.++++.++......++ +..+++......+.+..+++
T Consensus 101 ~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (442)
T TIGR00709 101 DYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGI 180 (442)
T ss_pred CccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccC
Confidence 34 555699999999999999999999999999999999999999887743221111 11222221112223334443
Q ss_pred ----CH----HHHHHHHh---cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc
Q 011959 232 ----DV----SALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 299 (474)
Q Consensus 232 ----d~----~~le~~l~---~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~ 299 (474)
+. +.+++.+. ..++++++||+||+++++|.+.|+++||++|+++|++||++||+||||+|| |+|.+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a 260 (442)
T TIGR00709 181 GGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFA 260 (442)
T ss_pred CchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhH
Confidence 12 22344443 234679999999999999999999999999999999999999999999999 9999999
Q ss_pred ccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 011959 300 QEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 379 (474)
Q Consensus 300 ~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 379 (474)
++++|+.||++|+||++++|+|+|+++++++ ++.+. ...+.+||++||++|++++++|+.++++++.+++++++++
T Consensus 261 ~~~~gv~PDiv~~gK~l~~G~Pigav~~~~~-~~~~~---~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~ 336 (442)
T TIGR00709 261 FEHAGIEPDFVVMSKAVGGGLPLAVLLIAPE-FDAWQ---PAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGER 336 (442)
T ss_pred HHHcCCCCcEEEEcccccCCcccEEEEEchH-HhccC---CCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999988 45554 3457789999999999999999999889999999999999
Q ss_pred HHHHHHHHhhhcCCeeEEeeeceeEEEEEecCC-CcCcccccccchHHHHHHHHHHHHCCeEecccC--Ccce--EEecC
Q 011959 380 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP-VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAG--FTSLA 454 (474)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~--~~~~~ 454 (474)
|+++|+++..+++++.+++|.|+|++++|.++. ..+......++......+...|+++||++.+.+ .+.+ .++++
T Consensus 337 l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~ 416 (442)
T TIGR00709 337 ITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPIT 416 (442)
T ss_pred HHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCC
Confidence 999999998889999999999999999997532 122111112233456778899999999997754 2333 45899
Q ss_pred CcHHHHHHHHHHHHHHHhh
Q 011959 455 HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 455 ~t~e~i~~~l~~l~~~~~~ 473 (474)
+|++++++++++|++++++
T Consensus 417 it~~ei~~~~~~l~~~l~~ 435 (442)
T TIGR00709 417 IDQEECEEGISRFKQAVEE 435 (442)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999865
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-65 Score=511.81 Aligned_cols=377 Identities=28% Similarity=0.390 Sum_probs=323.2
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHhhCCC--CC
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVPS--IE 156 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~la~~l~~~~~~--~~ 156 (474)
|+++++++|+|+||.|||+||||.+|+++.++||+||+|.+|+++|+++.... .++++...+|+++|++.+|+ .+
T Consensus 23 p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~ 102 (425)
T PRK07495 23 QIYADRAENAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGDFAK 102 (425)
T ss_pred CeeEEeeeecEEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCCCCC
Confidence 88999999999999999999999999999999999999999999999985422 35678889999999999984 37
Q ss_pred eEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCC-CccCCCCCCCCCCCCCCCceEEccCCC---
Q 011959 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFND--- 232 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~d--- 232 (474)
+++|+|||+||++.|+|+||.++++.+||.++++|||++.+++..++.. .....+ ... ..++..+|+++
T Consensus 103 ~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~ 175 (425)
T PRK07495 103 KTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGF------GAM-MPDVYHVPFPVELH 175 (425)
T ss_pred EEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCC------CCC-CCCeEEecCCcccc
Confidence 9999999999999999999999999999999999999999888877642 111111 110 12344555543
Q ss_pred -------HHHHHHHHhc--CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccc
Q 011959 233 -------VSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 302 (474)
Q Consensus 233 -------~~~le~~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~ 302 (474)
++++++++++ +++++++||+||+++++|.+.++++|+++|+++|++||++||+||||+|| |+|.++++++
T Consensus 176 g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~ 255 (425)
T PRK07495 176 GVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEH 255 (425)
T ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecc
Confidence 5666877763 34689999999999999999999999999999999999999999999999 9998888999
Q ss_pred cCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 011959 303 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382 (474)
Q Consensus 303 ~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 382 (474)
+|+.||++||||++++|+|+|++++++++++.+.. ..+.+||++||++|++++++|+.++++++.++++++++++++
T Consensus 256 ~gv~pDi~tlsK~l~~G~pigav~~~~~i~~~~~~---~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~ 332 (425)
T PRK07495 256 HEVAADLTTMAKGLAGGFPLAAVTGRAEIMDAPGP---GGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQ 332 (425)
T ss_pred cCCCCCEEeehhhhcCCccceEEEEcHHHHhccCC---CCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998863 346789999999999999999999888999999999999999
Q ss_pred HHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC--cceEE--ecCCcHH
Q 011959 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSD 458 (474)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~--~~~~t~e 458 (474)
+|+++..+++.+.++++.|+|+++++.+... ..++......+.+.|+++|+++.+.+. +.+++ ++++|++
T Consensus 333 ~L~~l~~~~~~i~~vrG~Gl~~~iel~~~~~------~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it~~ 406 (425)
T PRK07495 333 RLASLRETVPEIADIRGPGFMNAVEFNDADS------GLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDD 406 (425)
T ss_pred HHHHHHhhCCCeeeeecCceEEEEEEecCCC------CCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCccCHH
Confidence 9999988888889999999999999965321 123444567789999999999976542 44444 7999999
Q ss_pred HHHHHHHHHHHHHhhC
Q 011959 459 DIQHTITAAEKVLRQI 474 (474)
Q Consensus 459 ~i~~~l~~l~~~~~~~ 474 (474)
++|+++++|+++++++
T Consensus 407 ~id~~~~~l~~~l~~~ 422 (425)
T PRK07495 407 VFAEALDILEASILEA 422 (425)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998753
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-65 Score=518.16 Aligned_cols=389 Identities=21% Similarity=0.298 Sum_probs=318.5
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---CCC-CCCHHHHHHHHHHHhhCCC-C
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFG-APCLLENVLAEMVISAVPS-I 155 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~-~~~~~~~~la~~l~~~~~~-~ 155 (474)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|+++.. .++ .+++...+|+++|.+..|+ .
T Consensus 33 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 112 (466)
T PRK07036 33 GSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGDL 112 (466)
T ss_pred CCceEEeCceeEEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCCCc
Confidence 4899999999999999999999999999999999999999999999998842 233 5788899999999999984 7
Q ss_pred CeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEc
Q 011959 156 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 228 (474)
Q Consensus 156 ~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~ 228 (474)
++|+|+|||+||++.|+|+||.+ ++|.+||.++++|||++.++++.++.......+ +...++......+.+..
T Consensus 113 ~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (466)
T PRK07036 113 NHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRR 192 (466)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCccccc
Confidence 89999999999999999999988 457899999999999999888877753322111 11111110000111111
Q ss_pred cCC---------CHHHHHHHHhc-CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC
Q 011959 229 PFN---------DVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (474)
Q Consensus 229 ~~~---------d~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (474)
+.+ .++.+++.+.. +++++++||+||+++++|.+.|+++|+++|+++|++||++||+|||+||| |+|.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~ 272 (466)
T PRK07036 193 PAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHF 272 (466)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchh
Confidence 111 13456666653 56789999999999999999999999999999999999999999999999 99988
Q ss_pred cccc-ccCCCCceeehhhhcCCCc-ceEEEEecHHHHHhhcCC---C-CcccccCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 298 GAQE-YFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA---G-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 298 ~~~~-~~g~~pdi~t~sK~l~~G~-~iG~~~~~~~i~~~~~~~---~-~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
|+.+ ++|+.||++|+||+++||+ |+|++++++++++.+... . .+.+++||++||++|++++++|++++++++++
T Consensus 273 ~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~ 352 (466)
T PRK07036 273 FASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCE 352 (466)
T ss_pred hhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 8887 7999999999999999994 999999999999988632 1 24577899999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE
Q 011959 372 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT 451 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~ 451 (474)
++++++++|+++|+++ .+++++.++++.|+|++++|.++... .+....+......+.+.|+++||++.+.+ +.+++
T Consensus 353 ~~~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~~ve~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~-~~~~l 428 (466)
T PRK07036 353 HVREVGPYFEERLASL-RELPLVGDVRGDHLMACVECVADKGS--KALLPEDIAIGQRIDRHCQERGLLVRPLE-HLCVL 428 (466)
T ss_pred HHHHHHHHHHHHHHHh-ccCCCEEEEEeeceEEEEEEccCccc--cCCCCchhHHHHHHHHHHHHCCcEEeecC-CEEEE
Confidence 9999999999999876 56889999999999999999754321 01111233455678899999999998765 33444
Q ss_pred --ecCCcHHHHHHHHHHHHHHHhh
Q 011959 452 --SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 452 --~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++++|++|||+++++|++++++
T Consensus 429 ~Ppl~it~~~id~~~~~l~~al~~ 452 (466)
T PRK07036 429 SPPLIITRAQIDEIVAILRAAIEE 452 (466)
T ss_pred eCCCcCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999998865
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=469.85 Aligned_cols=392 Identities=27% Similarity=0.366 Sum_probs=337.1
Q ss_pred CchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 128 (474)
....|++++++..++-....+ ..|+++.+++|+++||.+|++|+||.+++++.+.||+||.|.+++++|.
T Consensus 19 ~~~aS~~~~~~E~k~~ahnyh----------pLpvvf~ka~g~~vwD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~ 88 (427)
T KOG1402|consen 19 NTTASQQIMERENKYGAHNYH----------PLPVVFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQA 88 (427)
T ss_pred CccchhhhhchhhhcccccCC----------cCceEEEecCCcEEECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHH
Confidence 344456677776665443322 2489999999999999999999999999999999999999999999999
Q ss_pred HhcCCC--CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhc--------CCcEEEEEeCCCCCCchhH
Q 011959 129 KKGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCYHGHADPF 198 (474)
Q Consensus 129 ~~~~~~--~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~--------~~~~ii~~~~~yhg~~~~~ 198 (474)
++.+.. .+.++...++++.+.+++ +.++|+-+|+|.||+|.|+|+||.+. .+.+|+...++|||.+.++
T Consensus 89 ~kLtlssrafYnd~~~~f~~~vt~lf-~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~a 167 (427)
T KOG1402|consen 89 DKLTLSSRAFYNDVLGEFAEYVTKLF-GYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGA 167 (427)
T ss_pred hHhhhhhHHHhhhhHHHHHHHHHHhc-CcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeee
Confidence 985432 245777789999999999 67899999999999999999999652 3456777799999999999
Q ss_pred HHhcCCCCccCCC-CCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Q 011959 199 LVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (474)
Q Consensus 199 ~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (474)
+++++..-....+ |..++ .+..+||+|.++|+.+|+. +.++++|+||+||+.|++.|+++||.++++||+
T Consensus 168 is~s~d~ds~~~fgp~~P~-------~~~~v~Y~d~eale~~l~~--~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCt 238 (427)
T KOG1402|consen 168 ISLSTDPDSWDGFGPFLPG-------VVDKVPYGDAEALEVALKS--PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCT 238 (427)
T ss_pred EEecCCcchhhccCCCCCC-------cceeeccCCHHHHHHHhcC--CCeeEEEeeccccccceEeCCchhHHHHHHHHH
Confidence 9988774222111 33333 2678899999999999986 589999999999999999999999999999999
Q ss_pred HhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHH
Q 011959 278 ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 355 (474)
Q Consensus 278 ~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~a 355 (474)
||++++|.||||||+ |+|++++++|..+.||++.|+|+|+|| +|++++++++++|-.+. +.-|++||++||++|+
T Consensus 239 kynvl~I~DEvQTGl~RTGk~la~d~env~PDivilgKalSGG~~Pvsavl~~~~im~~~~---pgeHgsTyggNpLg~~ 315 (427)
T KOG1402|consen 239 KYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILGKALSGGVYPVSAVLADDDIMLNIK---PGEHGSTYGGNPLGCA 315 (427)
T ss_pred hhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEeccccCCeeeeEEEEecHHHHhccC---CCccccccCCChHHHH
Confidence 999999999999999 999999999999999999999999999 69999999999999887 5669999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH
Q 011959 356 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (474)
Q Consensus 356 aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (474)
+++++|+++.++++.++..+++..++.+|.++..+.+ ++.+|||+|++.++++...+. .......++-.|
T Consensus 316 vaiAalevi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~~~~---------~~~~aw~~cl~l 386 (427)
T KOG1402|consen 316 VAIAALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKT---------SGQDAWDVCLAL 386 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhheeeccceEEEEEeccccc---------cchhHHHHHHcc
Confidence 9999999999999999999999999999999988776 567899999999999964321 123345677788
Q ss_pred HHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHh
Q 011959 435 LEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 435 ~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~ 472 (474)
.++|++..|.....+|+ ++.++++|+++.++++++.+.
T Consensus 387 k~~g~LAkptH~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 387 KENGLLAKPTHGNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred cccccccCCCCCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 89999999987666666 799999999999999998764
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-65 Score=511.23 Aligned_cols=394 Identities=28% Similarity=0.450 Sum_probs=334.0
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC
Q 011959 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (474)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 132 (474)
+.+++++.+++++.++.+. +|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~---------~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~ 73 (421)
T PRK06777 3 NSELNQRRLEATPRGVGVM---------CDFYAERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFT 73 (421)
T ss_pred hHHHHHHHHHhcccccCcC---------CCeeEEeeecCEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcc
Confidence 4567777778888776532 3799999999999999999999999999999999999999999999999864
Q ss_pred CCC---CCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCC-
Q 011959 133 SFG---APCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV- 206 (474)
Q Consensus 133 ~~~---~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~- 206 (474)
... .+++...+|+++|++..| +.++++|+|||+||++.|+|+||.+++|.+||.++++|||++.++++.++...
T Consensus 74 ~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~ 153 (421)
T PRK06777 74 HTAYQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAP 153 (421)
T ss_pred cccccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcc
Confidence 332 367788999999999987 36899999999999999999999999999999999999999999998876421
Q ss_pred ccCCC-CCCCCCCCCCCCceEEccCC----------CHHHHHHHHhc--CCCCeEEEEEccccCCCCcccCCHHHHHHHH
Q 011959 207 ATLGL-PDSPGVPKGATYETLTAPFN----------DVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 273 (474)
Q Consensus 207 ~~~~~-~~~~g~~~~~~~~~~~~~~~----------d~~~le~~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~ 273 (474)
....+ |..+ .+..++++ +++.+++++++ +++++++||+||+++++|...++++|+++|+
T Consensus 154 ~~~~~~~~~~--------~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~ 225 (421)
T PRK06777 154 YKVGFGPFPG--------SIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALR 225 (421)
T ss_pred cccCCCCCCC--------CcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHH
Confidence 11111 1111 12333332 36778888864 4578999999999999999999999999999
Q ss_pred HHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChH
Q 011959 274 RITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352 (474)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~ 352 (474)
++|++||++||+||||+|| |+|.+++++++++.||++|+||++++|+|+||+++++++++.+.. ..+.+||++||+
T Consensus 226 ~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~~G~pigav~~~~~i~~~~~~---~~~~~T~~~~p~ 302 (421)
T PRK06777 226 TLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGGMPISAVVGRAEVMDAPAP---GGLGGTYAGNPL 302 (421)
T ss_pred HHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEeeehhhcCCCceEEEEEcHHHHhccCC---CCCCCCCCcCHH
Confidence 9999999999999999999 999888889999999999999999999999999999999998863 346789999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHH
Q 011959 353 AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (474)
Q Consensus 353 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (474)
+|++++++|+.++++++++++++++++++++|+++..+++.+.++++.|+|+++++..+.. ..++.+....+.+
T Consensus 303 ~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~------~~~~~~~~~~l~~ 376 (421)
T PRK06777 303 AVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQT------GKPSPEFTRQYQR 376 (421)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCcc------CCccHHHHHHHHH
Confidence 9999999999998899999999999999999999988888899999999999999864211 1133345567788
Q ss_pred HHHHCCeEecccCC--cceEE--ecCCcHHHHHHHHHHHHHHHh
Q 011959 433 GMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 433 ~l~~~Gv~v~~~~~--~~~~~--~~~~t~e~i~~~l~~l~~~~~ 472 (474)
.|+++||++.+++. +.+++ ++++|++++++++++|++++.
T Consensus 377 ~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 377 QALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred HHHhCCeEEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 88999999988642 35555 578999999999999999875
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-65 Score=515.92 Aligned_cols=389 Identities=23% Similarity=0.290 Sum_probs=321.8
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHhhCCC-CCe
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVPS-IEM 157 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~la~~l~~~~~~-~~~ 157 (474)
| ++++++|+|+||.|||+||||.+++|+.++||+||+|.+|+++|++++... .+.++...+|+++|++.+|+ .++
T Consensus 15 p-~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~ 93 (447)
T PRK06917 15 P-VISHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDLNW 93 (447)
T ss_pred C-eEEeeeeeEEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCCCE
Confidence 5 589999999999999999999999999999999999999999999985321 25688899999999999984 589
Q ss_pred EEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEE---
Q 011959 158 VRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLT--- 227 (474)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~--- 227 (474)
++|+|||+||++.|+|+||.+ ++|.+||.++++|||++.++++.++.......+ |...+++.........
T Consensus 94 v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 173 (447)
T PRK06917 94 SFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPV 173 (447)
T ss_pred EEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCccccccc
Confidence 999999999999999999765 778999999999999999999887653221111 1111111100011111
Q ss_pred ------ccCCCHHHHHHHHhcCC-CCeEEEEEccccCC-CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc
Q 011959 228 ------APFNDVSALENLFENNK-GEIAAIILEPVVGN-SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 298 (474)
Q Consensus 228 ------~~~~d~~~le~~l~~~~-~~~a~vi~ep~~~~-~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~ 298 (474)
+.+++++.+++++++++ +++++||+||++++ +|.+.|+++|+++|+++|++||++||+|||++|| |+|.+|
T Consensus 174 ~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~ 253 (447)
T PRK06917 174 QKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMF 253 (447)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchh
Confidence 12335678888887653 57999999999985 6799999999999999999999999999999999 999999
Q ss_pred cccccCCCCceeehhhhcCCCc-ceEEEEecHHHHHhhcCC-CCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHH
Q 011959 299 AQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 376 (474)
Q Consensus 299 ~~~~~g~~pdi~t~sK~l~~G~-~iG~~~~~~~i~~~~~~~-~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~ 376 (474)
+++++|+.||++|+||++++|+ |+|++++++++++.+... ...++++||++||++|++++++|+.+++++++++++++
T Consensus 254 a~~~~gv~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~ 333 (447)
T PRK06917 254 AMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEK 333 (447)
T ss_pred hHHhcCCCCCEEEeeehhccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 9999999999999999999996 999999999999988642 23457789999999999999999999888999999999
Q ss_pred HHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-------Ccce
Q 011959 377 TGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAG 449 (474)
Q Consensus 377 ~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~ 449 (474)
+++|++.|+++..+++++.++++.|+|++++|.+++.. .+...++......+.+.|+++||++.+.+ .+.+
T Consensus 334 g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i 411 (447)
T PRK06917 334 GEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKT--KQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAV 411 (447)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCc--CCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEE
Confidence 99999999999888999999999999999999754321 11111223456788899999999998753 2344
Q ss_pred EE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 450 FT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 450 ~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++ ++++|++|||+++++|++++++
T Consensus 412 ~l~Ppl~it~~eid~~~~~l~~~l~~ 437 (447)
T PRK06917 412 IIAPPMTITYSELDELLSIFAKSVEE 437 (447)
T ss_pred EEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 44 6899999999999999999875
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-65 Score=514.37 Aligned_cols=381 Identities=22% Similarity=0.299 Sum_probs=319.5
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCCC-CCeE
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPS-IEMV 158 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~-~~~v 158 (474)
|+++++++|+|+||.|||+||||.++ ++.++||+||+|++|+.+|+++.... .+.++...+|+++|++.+|+ .+++
T Consensus 55 ~~~i~~a~G~~l~D~dG~~ylD~~g~-~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v 133 (459)
T PRK06082 55 LDVLASAEGIYIEDVDGKKYMDFHGN-NVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELNRV 133 (459)
T ss_pred CceEEeeeeeEEEECCCCEEEEcccH-hhcccCCCCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCCCCEE
Confidence 78999999999999999999999854 78999999999999999999885322 35788999999999999984 5899
Q ss_pred EEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCCC-----
Q 011959 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFND----- 232 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d----- 232 (474)
+|++||+||++.|+|+||.++++.+||.++++|||++.+++..++.......+ |..+++........+..|+++
T Consensus 134 ~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (459)
T PRK06082 134 LFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSD 213 (459)
T ss_pred EECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHH
Confidence 99999999999999999999999999999999999999998887754332211 222332222222233444554
Q ss_pred ---HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCc
Q 011959 233 ---VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 308 (474)
Q Consensus 233 ---~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pd 308 (474)
++.++++++++ +++++||+||++++ |.+.|+++||++|+++|++||++||+|||++|| |+|.+|+++++|+.||
T Consensus 214 ~~~~~~l~~~i~~~-~~vAavIvEPv~g~-g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PD 291 (459)
T PRK06082 214 VHYADYLEYVIEKE-GGIGAFIAEAVRNT-DVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPD 291 (459)
T ss_pred HHHHHHHHHHHhcC-CCEEEEEECCccCC-CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCC
Confidence 35578888754 57999999999988 577899999999999999999999999999999 9999999999999999
Q ss_pred eeehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 011959 309 LTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 309 i~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (474)
++|+||++++| +|+|++++++++++.+.. ...+ +||++||++|++++++|++++++++++++++++++|+++|+++
T Consensus 292 iv~~gKgl~gG~~P~~av~~~~~i~~~~~~--~~~~-~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l 368 (459)
T PRK06082 292 ILCIGKGLGGGLVPIAAMITKDKYNTAAQI--SLGH-YTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLEM 368 (459)
T ss_pred EEEecccccCCCCcceEEEEcHHHHhhccC--CCCC-CCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 599999999998865531 2334 7999999999999999999988899999999999999999999
Q ss_pred hhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHH
Q 011959 388 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTIT 465 (474)
Q Consensus 388 ~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~ 465 (474)
..+++++.+++|.|+|++++|..+.. ...++......+...|+++||++.+.+.+.+++ ++++|+++||++++
T Consensus 369 ~~~~~~i~~vrG~Gl~~~ve~~~~~~-----~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~i~~~Ppl~it~~eid~~~~ 443 (459)
T PRK06082 369 KAKYPLIGDVRGIGLLWGVELVTDRH-----TKERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPLIITREELTQALA 443 (459)
T ss_pred HhhCCCeeeeeeccceeEEEEccCcc-----ccCccHHHHHHHHHHHHhCCCEEEecCCCEEEEeCCCccCHHHHHHHHH
Confidence 88899999999999999999975321 112233445678889999999998865555555 58999999999999
Q ss_pred HHHHHHhh
Q 011959 466 AAEKVLRQ 473 (474)
Q Consensus 466 ~l~~~~~~ 473 (474)
++++++.+
T Consensus 444 ~l~~~l~~ 451 (459)
T PRK06082 444 ILEEAIAK 451 (459)
T ss_pred HHHHHHHH
Confidence 99999875
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-65 Score=516.02 Aligned_cols=389 Identities=23% Similarity=0.289 Sum_probs=317.7
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHhhCC-CC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVP-SI 155 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~----~~~~~~~~~~la~~l~~~~~-~~ 155 (474)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+++|++++.. +++.++...+|+++|++.+| +.
T Consensus 32 ~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 111 (456)
T PRK07480 32 GSRVITRAEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGF 111 (456)
T ss_pred CCceEEeceeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCCc
Confidence 37899999999999999999999999999999999999999999999998532 24578999999999999998 47
Q ss_pred CeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEE-
Q 011959 156 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLT- 227 (474)
Q Consensus 156 ~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~- 227 (474)
++++|++||+||++.|+|+||.+ ++|.+||.++++|||++.++++.++........ +..+++........+.
T Consensus 112 ~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~ 191 (456)
T PRK07480 112 NHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGE 191 (456)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCccccc
Confidence 89999999999999999999998 568899999999999999888887653221111 1111111111000111
Q ss_pred ------ccCCC--HHHHHHHH-hcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC
Q 011959 228 ------APFND--VSALENLF-ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (474)
Q Consensus 228 ------~~~~d--~~~le~~l-~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (474)
.++++ ++.+++.+ ..+++++++||+||+++++|.+.|+++||++|+++|++||++||+|||+||| |+|.+
T Consensus 192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~ 271 (456)
T PRK07480 192 GGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEW 271 (456)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence 11222 36676545 4455789999999999999999999999999999999999999999999999 99999
Q ss_pred ccccccCCCCceeehhhhcCCCc-ceEEEEecHHHHHhhc-CCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHH-H
Q 011959 298 GAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVA-PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL-N 374 (474)
Q Consensus 298 ~~~~~~g~~pdi~t~sK~l~~G~-~iG~~~~~~~i~~~~~-~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~-~ 374 (474)
|+++++|+.||++||||+++||+ |+|++++++++++.+. ....+.+++||++||++|++++++|++++++++.+++ +
T Consensus 272 ~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~ 351 (456)
T PRK07480 272 FGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRD 351 (456)
T ss_pred hhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999995 9999999999999883 2233468899999999999999999999989999999 6
Q ss_pred HHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceE--Ee
Q 011959 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TS 452 (474)
Q Consensus 375 ~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~--~~ 452 (474)
+++++|+++|+++ .+++++.+++|.|+|++++|.++.... .+.. ........+.+.|+++||++.+.+ +.++ ++
T Consensus 352 ~~g~~l~~~l~~l-~~~~~i~~vrG~Glm~gie~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~Gll~~~~~-~~l~~~Pp 427 (456)
T PRK07480 352 DTGPYLQKRLREL-ADHPLVGEVRGVGLVGAIELVKDKATR-ERFE-AGGGVGTICRDHCFANGLIMRAVG-DRMIISPP 427 (456)
T ss_pred HHHHHHHHHHHHh-hcCCCeeeEEeecceEEEEEecccccc-ccCc-chhhHHHHHHHHHHHCCcEEeecC-CEEEEECC
Confidence 9999999999995 578899999999999999997542110 0000 001223567788999999998754 3444 46
Q ss_pred cCCcHHHHHHHHHHHHHHHhh
Q 011959 453 LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+++|++|||+++++|++++++
T Consensus 428 l~it~~eid~~~~~l~~al~~ 448 (456)
T PRK07480 428 LVITHAEIDELVEKARKALDA 448 (456)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 889999999999999999865
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-65 Score=514.60 Aligned_cols=390 Identities=23% Similarity=0.263 Sum_probs=316.2
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHhhCCC-C
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVPS-I 155 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~----~~~~~~~~~~la~~l~~~~~~-~ 155 (474)
.|+++++++|+|+||.|||+||||.+++++.+|||+||+|++|+++|+++... ++..++...+|+++|++.+|+ .
T Consensus 36 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 115 (460)
T PRK12403 36 GPRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHY 115 (460)
T ss_pred CCceEEeceeeEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCc
Confidence 38999999999999999999999999999999999999999999999998432 234678899999999999984 5
Q ss_pred CeEEEeCCHHHHHHHHHHHhHhhc---C---CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEE--
Q 011959 156 EMVRFVNSGTEACMGVLRLARAFT---G---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-- 227 (474)
Q Consensus 156 ~~v~~~~sGseA~~~al~~ar~~~---~---~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-- 227 (474)
++++|+|||+|||+.|||+||.++ + +.+||.+.++|||++.+++..++........+..+++.+......+.
T Consensus 116 ~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~ 195 (460)
T PRK12403 116 SHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANG 195 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccc
Confidence 899999999999999999999883 3 45678899999999999998887543221111111111100000111
Q ss_pred -----ccCCC--HHHHHHHHh-cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc
Q 011959 228 -----APFND--VSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 298 (474)
Q Consensus 228 -----~~~~d--~~~le~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~ 298 (474)
.++++ +++|++.+. ++++++++||+||+++++|.+.|+++||++|+++|++||++||+|||++|| |+|.+|
T Consensus 196 ~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~ 275 (460)
T PRK12403 196 GELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWF 275 (460)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh
Confidence 11111 356766553 445689999999999999999999999999999999999999999999999 999999
Q ss_pred cccccCCCCceeehhhhcCCCc-ceEEEEecHHHHHhhcCCC-CcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHH-H
Q 011959 299 AQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAG-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN-K 375 (474)
Q Consensus 299 ~~~~~g~~pdi~t~sK~l~~G~-~iG~~~~~~~i~~~~~~~~-~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~-~ 375 (474)
+++++|+.||++|+||++++|+ |+|++++++++++.+.... .+.+++||++||++|++++++|+++++++++++++ +
T Consensus 276 a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~ 355 (460)
T PRK12403 276 AHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDD 355 (460)
T ss_pred hhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999999999999995 9999999999999886322 33478899999999999999999999888999996 9
Q ss_pred HHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceE--Eec
Q 011959 376 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSL 453 (474)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~--~~~ 453 (474)
++++|++.|+++..+++++.++++.|+|++++|..+....... .........+...|+++|+++.+.+. .++ +++
T Consensus 356 ~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Gll~~~~~~-~~~l~Ppl 432 (460)
T PRK12403 356 TGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKRF--ANENDLAWRCRTIGFEEGVIIRSTLG-RMIMAPAL 432 (460)
T ss_pred HHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCccccccc--cchhHHHHHHHHHHHhCCEEEEecCC-EEEEECCC
Confidence 9999999999998889999999999999999997542211100 00112244577888999999986542 333 478
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q 011959 454 AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~~t~e~i~~~l~~l~~~~~~ 473 (474)
++|++|+|+++++|++++++
T Consensus 433 ~it~~eid~~~~~l~~al~~ 452 (460)
T PRK12403 433 VAGRAEIDELVDKTRIAVDR 452 (460)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999865
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-65 Score=511.54 Aligned_cols=406 Identities=27% Similarity=0.382 Sum_probs=331.3
Q ss_pred hHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc
Q 011959 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG 131 (474)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~ 131 (474)
++.++.++.++++...... ...|+++++++|+|+||.|||+||||.+|+++.++||+||+|.+|+.+|++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~--------~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~ 73 (443)
T PRK08360 2 KPLEIIERYSKVISPANRV--------TYYPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKL 73 (443)
T ss_pred CHHHHHHHHHHhccccccc--------ccCCceEEecceeEEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhc
Confidence 3456666666665432110 01389999999999999999999999999999999999999999999999986
Q ss_pred CCCC---CCCHHHHHHHHHHHhhCCC-CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCC-
Q 011959 132 TSFG---APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV- 206 (474)
Q Consensus 132 ~~~~---~~~~~~~~la~~l~~~~~~-~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~- 206 (474)
..+. ..++...+|+++|++..|. .++++|+|||+||++.|+|+||.+++|.+|+.+.++|||++.+++..++...
T Consensus 74 ~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~ 153 (443)
T PRK08360 74 IHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFP 153 (443)
T ss_pred cCccccccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcc
Confidence 4332 3477889999999999984 5899999999999999999999999999999999999999999988876421
Q ss_pred ccCCCCCCCCCCCCCCCceEEccC---------CCHHHHHHHHhc--CCCCeEEEEEccccCCCCcccCCHHHHHHHHHH
Q 011959 207 ATLGLPDSPGVPKGATYETLTAPF---------NDVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 275 (474)
Q Consensus 207 ~~~~~~~~~g~~~~~~~~~~~~~~---------~d~~~le~~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l 275 (474)
....+...+++......+.+..++ ++++.+++++++ +++++++||+||+++++|.+.++++|+++|+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l 233 (443)
T PRK08360 154 VRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKI 233 (443)
T ss_pred cccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence 111110011111000011111111 235567777764 346899999999999999999999999999999
Q ss_pred HHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHH
Q 011959 276 TKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 354 (474)
Q Consensus 276 ~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~ 354 (474)
|++||++||+||||+|| |+|.+++.+++++.||++||||++++|+|+||+++++++++.+. ...+.+|+++||++|
T Consensus 234 ~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~G~pigav~~~~~i~~~~~---~~~~~~T~~~~p~~~ 310 (443)
T PRK08360 234 LDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDSLP---PLAHAFTLSGNPVAS 310 (443)
T ss_pred HHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccCCceeEEEEEcHHHHhhhc---CCCCCCCCCcCHHHH
Confidence 99999999999999999 99988888889999999999999999999999999999999886 344677999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH
Q 011959 355 TAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (474)
Q Consensus 355 aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (474)
++++++|+.+++++++++++++++++++.|+++..+++++.++++.|+|++++|.+++. .+.++......+.+.|
T Consensus 311 aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~-----~~~~~~~~~~~~~~~l 385 (443)
T PRK08360 311 AAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRE-----TKERAYEEAAKVVWRA 385 (443)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCc-----ccCccHHHHHHHHHHH
Confidence 99999999998889999999999999999999888889889999999999999975321 1113334456788999
Q ss_pred HHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 435 LEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 435 ~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+++|+++.+...+.+++ ++++|+++|++++++|++++++
T Consensus 386 ~~~Gi~~~~~~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~ 426 (443)
T PRK08360 386 WELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDILEEAIED 426 (443)
T ss_pred HHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999998765566666 8999999999999999999865
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=513.11 Aligned_cols=389 Identities=21% Similarity=0.238 Sum_probs=318.6
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---CC-CCCCHHHHHHHHHHHhhCCC-C
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SF-GAPCLLENVLAEMVISAVPS-I 155 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~-~~~~~~~~~la~~l~~~~~~-~ 155 (474)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+++|++++. .+ .+.++...+|+++|++.+|+ .
T Consensus 30 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 109 (460)
T PRK06105 30 GPLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVPM 109 (460)
T ss_pred CCceEEeeeEEEEEECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCC
Confidence 3899999999999999999999999999999999999999999999999853 22 24688889999999999984 6
Q ss_pred CeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEc
Q 011959 156 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 228 (474)
Q Consensus 156 ~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~ 228 (474)
++|+|+|||+||+++|+|+||.+ ++|.+||.++++|||++.+++..++.......+ +..+++......+.+.+
T Consensus 110 ~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~ 189 (460)
T PRK06105 110 SKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRF 189 (460)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCccccc
Confidence 89999999999999999999866 468899999999999999888777643221111 11111111000011111
Q ss_pred c--C--------CCHHHHHHHHhc-CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC
Q 011959 229 P--F--------NDVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 296 (474)
Q Consensus 229 ~--~--------~d~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~ 296 (474)
+ . .+++++|+++.. +++++++||+||+++++|.+.++++||++|+++|++||++||+||||||| |+|+
T Consensus 190 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~ 269 (460)
T PRK06105 190 GLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN 269 (460)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch
Confidence 0 0 024667887753 45689999999999999999999999999999999999999999999999 9999
Q ss_pred CccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC----CCcccccCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 297 GGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 297 ~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
+|+++++|+.||++|+||+++|| +|+|++++++++++.+... +...|.+||++||++|++++++|++++++++++
T Consensus 270 ~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~ 349 (460)
T PRK06105 270 MFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVG 349 (460)
T ss_pred hhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999998 6999999999999988632 123478899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE
Q 011959 372 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT 451 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~ 451 (474)
++++++++|+++|+++ .+++++.++++.|+|+++++..+.... .. ..+.......+.+.|+++||++.+.+ +.+++
T Consensus 350 ~v~~~g~~l~~~L~~l-~~~~~v~~vrG~Gl~~gie~~~~~~~~-~~-~~~~~~~a~~i~~~~~~~Gvl~~~~g-~~i~l 425 (460)
T PRK06105 350 NAAERGARLQARLRAL-ADHPLVGEVRGVGLIAAVELVADKATK-TP-FEPPGKVGARANAAAHEHGVISRAMG-DTLAF 425 (460)
T ss_pred HHHHHHHHHHHHHHHh-hcCCCeEEEEecceEEEEEEecCcccC-CC-CCchhHHHHHHHHHHHHCCeEEEecC-CEEEE
Confidence 9999999999999998 778999999999999999996432110 00 00112334678889999999998864 34444
Q ss_pred --ecCCcHHHHHHHHHHHHHHHhh
Q 011959 452 --SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 452 --~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++++|++|||+++++|++++++
T Consensus 426 ~Ppl~it~~eid~~~~~l~~~l~~ 449 (460)
T PRK06105 426 CPPLIITAAQVDEMVDRFGRALDD 449 (460)
T ss_pred ECCCccCHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999875
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=512.98 Aligned_cols=408 Identities=27% Similarity=0.415 Sum_probs=334.8
Q ss_pred CchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 128 (474)
..++|++++++++++++.++.+. .|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|+
T Consensus 13 ~~~~s~~~~~~~~~~~~~~~~~~---------~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~ 83 (451)
T PRK06918 13 PGPKAASLLERRQNIVPKGVSNG---------IPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQV 83 (451)
T ss_pred CCCCHHHHHHHHHHhhccccccC---------CCceEEeccccEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHH
Confidence 34678899999999998876432 378999999999999999999999999999999999999999999999
Q ss_pred HhcCCCC---CCCHHHHHHHHHHHhhCCC-C-CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcC
Q 011959 129 KKGTSFG---APCLLENVLAEMVISAVPS-I-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG 203 (474)
Q Consensus 129 ~~~~~~~---~~~~~~~~la~~l~~~~~~-~-~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g 203 (474)
+++...+ +.++...+|+++|++..|+ . ++++|+|||+||++.|+|+||.+++|.+||.++++|||++.++++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~ 163 (451)
T PRK06918 84 DQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTS 163 (451)
T ss_pred HhccCccccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcC
Confidence 9864332 3578899999999999984 3 699999999999999999999999999999999999999999998776
Q ss_pred CC-CccCCC-CCCCCCCCCCCCceEEccCC-------C--HHHHHHHHhc--CCCCeEEEEEccccCCCCcccCCHHHHH
Q 011959 204 SG-VATLGL-PDSPGVPKGATYETLTAPFN-------D--VSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (474)
Q Consensus 204 ~~-~~~~~~-~~~~g~~~~~~~~~~~~~~~-------d--~~~le~~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (474)
.. .....+ |..+++......+.+..+.+ + ++.+++++.. +++++++||+||+++++|.++|+++|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~ 243 (451)
T PRK06918 164 KVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQ 243 (451)
T ss_pred CCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHH
Confidence 42 111111 11111110000001111110 0 2345555431 3568999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCC
Q 011959 271 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349 (474)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~ 349 (474)
+|+++|++||++||+||||+|| |+|.+++++++++.||+++|||++++|+|+||+++++++++.+. ...+.+|+++
T Consensus 244 ~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~---~~~~~~T~~g 320 (451)
T PRK06918 244 EVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDESA---PGELGGTYAG 320 (451)
T ss_pred HHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCCCccEEEEEcHHHHhccC---CCCcCcCCCc
Confidence 9999999999999999999999 99988888899999999999999999999999999999999886 3457789999
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHH
Q 011959 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 429 (474)
Q Consensus 350 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 429 (474)
||++|+++.++|+.++++++.+++++++++++++|+++..+++.+.++++.|+|+++++..++. ...++......
T Consensus 321 ~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~vrg~G~~~~~~~~~~~~-----~~~~~~~~~~~ 395 (451)
T PRK06918 321 SPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELVQDRK-----TKEPDKTLTAN 395 (451)
T ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCCCceeeccceeEEEEEEccCCC-----cCCCcHHHHHH
Confidence 9999999999999998889999999999999999999877788888999999999999863321 11234455678
Q ss_pred HHHHHHHCCeEecccCC--cceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 430 FYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 430 ~~~~l~~~Gv~v~~~~~--~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+.+.|+++||++.+++. +.+++ ++++|+++|++++++|++++++
T Consensus 396 l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~ 443 (451)
T PRK06918 396 ICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQA 443 (451)
T ss_pred HHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 88999999999988642 45565 5679999999999999999865
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-64 Score=501.16 Aligned_cols=370 Identities=26% Similarity=0.367 Sum_probs=324.0
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+++|+++....+ ..++...+|+++|++..|..+++
T Consensus 22 ~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~v 101 (408)
T PRK04612 22 RQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRFAEKV 101 (408)
T ss_pred CCceEEEeeeCEEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 4889999999999999999999999999999999999999999999999864333 45788899999999998766899
Q ss_pred EEeCCHHHHHHHHHHHhHhhc-------CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC
Q 011959 159 RFVNSGTEACMGVLRLARAFT-------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~-------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 231 (474)
+|++||+||++.|+|+||.++ ++.+||.++++|||++.++++.++.......+.. ....+..+|++
T Consensus 102 ~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~-------~~~~~~~~~~~ 174 (408)
T PRK04612 102 FLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEP-------LPGGFRYVDFN 174 (408)
T ss_pred EEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCC-------CCCCceEcCCC
Confidence 999999999999999999984 3568999999999999999988775433222110 11235678899
Q ss_pred CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee
Q 011959 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310 (474)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~ 310 (474)
|++.+++++. ++++++||+||+++++|.+.++++|+++|+++|++||++||+||||+|| |+|.+++..++++.||++
T Consensus 175 d~~~l~~~~~--~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~ 252 (408)
T PRK04612 175 DVEALEAAMA--GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIV 252 (408)
T ss_pred CHHHHHHhhC--CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEE
Confidence 9999999886 3589999999999999999999999999999999999999999999999 999888777889999999
Q ss_pred ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 311 t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
||||++++|+|+|++++++++++.+.. ..+.+||++||++|+++.++|+.++++++.+++++++++++++|+++..+
T Consensus 253 t~~K~l~~G~piga~~~~~~~~~~~~~---~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~ 329 (408)
T PRK04612 253 TLAKALGGGFPIGAMLAGPKVAETMQF---GAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEALNAE 329 (408)
T ss_pred EEcchhcCCCceEEEEECHHHHhhhcC---CCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999888863 35778999999999999999999988999999999999999999999888
Q ss_pred cCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHH
Q 011959 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAE 468 (474)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~ 468 (474)
++++.+++|.|+|+++++..+ .......+.+.|+++||++.+.+.+.+++ ++.+|++||++++++|+
T Consensus 330 ~~~i~~vrg~Gl~~~i~~~~~-----------~~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl~it~eeid~~l~~l~ 398 (408)
T PRK04612 330 FGVFAQVRGRGLMLGAVLAPA-----------HAGQAGAILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLARLR 398 (408)
T ss_pred CCCeeeeeccceEEEEEecCc-----------hhhHHHHHHHHHHHCCeEEeeCCCCEEEEcCCccCCHHHHHHHHHHHH
Confidence 999999999999999999632 11234678889999999998876666666 68999999999999999
Q ss_pred HHHhh
Q 011959 469 KVLRQ 473 (474)
Q Consensus 469 ~~~~~ 473 (474)
+++++
T Consensus 399 ~~l~~ 403 (408)
T PRK04612 399 LALAD 403 (408)
T ss_pred HHHHH
Confidence 99865
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-64 Score=503.52 Aligned_cols=374 Identities=26% Similarity=0.420 Sum_probs=320.9
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhCC--CCC
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP--SIE 156 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---~~~~~~~~la~~l~~~~~--~~~ 156 (474)
|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|+++..... ..++...+|+++|++..| +.+
T Consensus 23 ~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~ 102 (421)
T PRK09792 23 NFFAQSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQA 102 (421)
T ss_pred CeeEEeccccEEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHHhCCCCCCc
Confidence 789999999999999999999999999999999999999999999999864332 367888999999999987 347
Q ss_pred eEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCC-CccCCC-CCCCCCCCCCCCceEEccC----
Q 011959 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGL-PDSPGVPKGATYETLTAPF---- 230 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~-~~~~g~~~~~~~~~~~~~~---- 230 (474)
+++|++||+||++.|+|+||.++++.+||.++++|||++.++++.++.. ....++ |... .+..+|+
T Consensus 103 ~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~--------~~~~v~~p~~~ 174 (421)
T PRK09792 103 KTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPG--------SVYHVPYPSDL 174 (421)
T ss_pred eEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCC--------CcEEcCCCccc
Confidence 9999999999999999999999999999999999999999999887642 111111 1111 2333333
Q ss_pred ------CCHHHHHHHHhc--CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcccc
Q 011959 231 ------NDVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE 301 (474)
Q Consensus 231 ------~d~~~le~~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~ 301 (474)
++++.+++++++ +++++++||+||+++++|.+.++++|+++|+++|++||++||+|||++|| |+|.+++++
T Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~ 254 (421)
T PRK09792 175 HGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMD 254 (421)
T ss_pred ccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHH
Confidence 346888888874 34689999999999999999999999999999999999999999999999 999989999
Q ss_pred ccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011959 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 381 (474)
Q Consensus 302 ~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~ 381 (474)
++++.||++||||++++|+|+||+++++++++.+.. ..+.+||++||++|++++++|+.++++++.+++++++++++
T Consensus 255 ~~~~~pDi~t~gK~l~~G~pigav~~~~~i~~~~~~---~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~ 331 (421)
T PRK09792 255 HYADKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAP---GGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLK 331 (421)
T ss_pred hcCCCCcEEEeehhhcCCCceEEEEEcHHHHhccCC---CCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998863 34778999999999999999999988889999999999999
Q ss_pred HHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEE--ecCCcH
Q 011959 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFT--SLAHSS 457 (474)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~--~~~~t~ 457 (474)
+.|+++..+++.+.+++|.|+|++++|.+... ..++......+.+.|+++||++.+.+ .+.+++ ++++++
T Consensus 332 ~~l~~l~~~~p~v~~vrG~Gl~~~ie~~~~~~------~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~ 405 (421)
T PRK09792 332 NTLIDAKESVPAIAAVRGLGSMIAAEFNDPQT------GEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPD 405 (421)
T ss_pred HHHHHHHHhCCCcceecccceEEEEEecCCcc------CCcchHHHHHHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCH
Confidence 99999988889888999999999999964321 12233456788999999999997543 234444 688999
Q ss_pred HHHHHHHHHHHHHHh
Q 011959 458 DDIQHTITAAEKVLR 472 (474)
Q Consensus 458 e~i~~~l~~l~~~~~ 472 (474)
++|++++++|+++++
T Consensus 406 ~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 406 AQFDAAMKILQDALS 420 (421)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999885
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-64 Score=506.77 Aligned_cols=382 Identities=28% Similarity=0.375 Sum_probs=321.3
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHhhCC-CCCe
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SIEM 157 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~la~~l~~~~~-~~~~ 157 (474)
|+++++++|+|+||.|||+||||.+|+++++|||+||+|.+|+++|+++.... ...++...+|+++|++.+| +.++
T Consensus 26 ~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~ 105 (433)
T PRK08117 26 NLPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDC 105 (433)
T ss_pred CceEEeeeeeEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCE
Confidence 48999999999999999999999999999999999999999999999885322 2467889999999999996 5789
Q ss_pred EEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCC-CccCC-CCCCCCCCCCCCCce---------E
Q 011959 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLG-LPDSPGVPKGATYET---------L 226 (474)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~-~~~~~g~~~~~~~~~---------~ 226 (474)
++|+|||+|||+.|||+||.++++.+||.++++|||++.++++.++.. ..... .+..+++......+. .
T Consensus 106 v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (433)
T PRK08117 106 FFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPE 185 (433)
T ss_pred EEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchh
Confidence 999999999999999999999999999999999999999998776532 11111 121222110000000 1
Q ss_pred EccCCCHHHHHHHHhc--CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcccccc
Q 011959 227 TAPFNDVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 303 (474)
Q Consensus 227 ~~~~~d~~~le~~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~ 303 (474)
...++|++++++++++ .++++++||+||+++++|.+.|+++||++|+++|++||++||+||||+|| |+|.+++.+++
T Consensus 186 ~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~ 265 (433)
T PRK08117 186 VCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTF 265 (433)
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhc
Confidence 1122467788888864 34689999999999999999999999999999999999999999999999 99988888899
Q ss_pred CCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 011959 304 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 383 (474)
Q Consensus 304 g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~ 383 (474)
|+.||++||||++++|+|+|++++++++++.+. ...+.+||++||++|++++++|+.++++++++++++++++++++
T Consensus 266 gv~pDi~t~sK~lg~G~pigav~~~~~i~~~~~---~~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~ 342 (433)
T PRK08117 266 GVVPDIMTIAKGIASGLPLSAVVASKELMEQWP---LGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALER 342 (433)
T ss_pred CCCCCEeehhhhccCCCcceeEEEcHHHHhhcc---CCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999885 34577899999999999999999998889999999999999999
Q ss_pred HHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC--cceEE--ecCCcHHH
Q 011959 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDD 459 (474)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~--~~~~t~e~ 459 (474)
|+++..+++.+.++++.|+|++++|.+++ ..++......+.+.|+++||++.+.+. ..+|+ ++.+|+++
T Consensus 343 L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~-------~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~ 415 (433)
T PRK08117 343 LEVLKEKHPVIGDVRGIGLMIGIEIVDPD-------GEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEE 415 (433)
T ss_pred HHHHHhcCCceeeeecCCcEEEEEEecCC-------CCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHH
Confidence 99988788888899999999999997542 113344556788999999999876542 45555 48999999
Q ss_pred HHHHHHHHHHHHhh
Q 011959 460 IQHTITAAEKVLRQ 473 (474)
Q Consensus 460 i~~~l~~l~~~~~~ 473 (474)
|++++++|++++++
T Consensus 416 i~~~~~~l~~~l~~ 429 (433)
T PRK08117 416 IDEGLDILDEALTE 429 (433)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=506.75 Aligned_cols=377 Identities=23% Similarity=0.313 Sum_probs=319.2
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--C-CCCCHHHHHHHHHHHhhCC-CCCe
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SIEM 157 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~-~~~~~~~~~la~~l~~~~~-~~~~ 157 (474)
|+++++++|+|+||.|||+||||.+++|++++||+||+|.+|+++|+++... + ...++...+|+++|++..| +.++
T Consensus 26 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~ 105 (428)
T PRK07986 26 VYPVVSAEGCELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQPLEC 105 (428)
T ss_pred CeeEEeeeeeEEEeCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCCcCE
Confidence 5789999999999999999999999999999999999999999999998532 2 3478889999999999998 4789
Q ss_pred EEEeCCHHHHHHHHHHHhHhh-----cCCcEEEEEeCCCCCCchhHHHhcCCCC-ccCCC-CCCCCCCCCCCCc---eEE
Q 011959 158 VRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYE---TLT 227 (474)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~-----~~~~~ii~~~~~yhg~~~~~~~~~g~~~-~~~~~-~~~~g~~~~~~~~---~~~ 227 (474)
++|++||+||++.|+|+||.+ ++|.+||.++++|||.+.++++.++... ....+ +..+++....... ...
T Consensus 106 v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 185 (428)
T PRK07986 106 VFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGE 185 (428)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchh
Confidence 999999999999999999998 6789999999999999999988766321 11111 1111110000000 001
Q ss_pred ccCCCHHHHHHHHhcCCCCeEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCC
Q 011959 228 APFNDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 305 (474)
Q Consensus 228 ~~~~d~~~le~~l~~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~ 305 (474)
+++||++++++.++++++++++||+||+ ++++|.+.++++||++|+++|++||++||+||||+|| |+|.+|+++++|+
T Consensus 186 ~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv 265 (428)
T PRK07986 186 WDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGI 265 (428)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCC
Confidence 2357889999999876678999999996 8999999999999999999999999999999999999 9999999999999
Q ss_pred CCceeehhhhcCCC-cceEEEEecHHHHHhhcCCC--CcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 011959 306 TPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG--PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382 (474)
Q Consensus 306 ~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~--~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 382 (474)
.||++||||+++|| +|+|++++++++++.+.... .+.+++||++||++|++++++|+.++++++++++++++++|++
T Consensus 266 ~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~ 345 (428)
T PRK07986 266 APDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLRE 345 (428)
T ss_pred CCCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999 59999999999999986421 2457889999999999999999999988999999999999999
Q ss_pred HHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHH
Q 011959 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDI 460 (474)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i 460 (474)
.|+++. +++.+.++|+.|+|+++++..+. ....+.+.|+++||++.+.+ +.+++ ++++|++||
T Consensus 346 ~l~~l~-~~~~i~~vRg~Gl~~~ve~~~~~-------------~~~~~~~~l~~~Gl~~~~~g-~~i~~~Ppl~it~~ei 410 (428)
T PRK07986 346 ELAPLR-DAPMVADVRVLGAIGVVETTRPV-------------NMAALQRFFVEQGVWIRPFG-KLIYLMPPYIILPEQL 410 (428)
T ss_pred HHHHHh-cCCCEEeEeccceEEEEEeCCcc-------------cHHHHHHHHHHCCcEEEecC-CEEEEeCCCCCCHHHH
Confidence 999875 47788899999999999985421 12468889999999998865 44555 799999999
Q ss_pred HHHHHHHHHHHhh
Q 011959 461 QHTITAAEKVLRQ 473 (474)
Q Consensus 461 ~~~l~~l~~~~~~ 473 (474)
++++++|++++++
T Consensus 411 ~~~~~~l~~~l~~ 423 (428)
T PRK07986 411 QRLTAAVNRAVQD 423 (428)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999864
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-64 Score=548.21 Aligned_cols=385 Identities=24% Similarity=0.298 Sum_probs=325.2
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHhhCC-CCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGAPCLLENVLAEMVISAVP-SIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~la~~l~~~~~-~~~~v 158 (474)
.|+++++|+|+|+||.|||+||||.+++ .++||+||+|++|+++|++++ ....+.++...+|+++|++.+| +.+++
T Consensus 606 ~p~~i~~g~G~~l~D~dG~~ylD~~~g~--~~lGH~hp~v~~Ai~~q~~~l~~~~~~~~~~~~~lAe~L~~~~p~~~~~v 683 (1013)
T PRK06148 606 DPIKFVRGWGVWLIDNRGRAYLDCFNNV--CHVGHAHPRVVAAAARQAARLNTNTRYLHDAIVAYAERLTATLPDGLTVA 683 (1013)
T ss_pred CCceEEEeeecEEEECCCCEEEEcccCh--hhcCCCCHHHHHHHHHHHhhcCCcCCcCCHHHHHHHHHHHHhCCCCcCEE
Confidence 4899999999999999999999999985 789999999999999999985 3445678899999999999998 46899
Q ss_pred EEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCC-CCCCCCCCCCceEEccCC--C---
Q 011959 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFN--D--- 232 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~~~~~~~--d--- 232 (474)
+|+|||+||++.|||+||.+|++.+||.++++|||++.+++..++........+. .+++......+.+..||+ +
T Consensus 684 ~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 763 (1013)
T PRK06148 684 FFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEH 763 (1013)
T ss_pred EEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhh
Confidence 9999999999999999999999999999999999999999887763211100011 111111111223455665 2
Q ss_pred ----HHHHHHHHh---cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-Ccccccc
Q 011959 233 ----VSALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF 303 (474)
Q Consensus 233 ----~~~le~~l~---~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~ 303 (474)
.+.+++.++ .+++++++||+||+++++|.+.|+++||++|+++|++||+++|+||||||| |+|. +|+++++
T Consensus 764 ~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~ 843 (1013)
T PRK06148 764 GRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQ 843 (1013)
T ss_pred HHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhc
Confidence 245666554 345689999999999999999999999999999999999999999999999 9996 8999999
Q ss_pred CCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 011959 304 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 383 (474)
Q Consensus 304 g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~ 383 (474)
|+.|||+|+||++|||+|+|++++++++++.+... ..+++||++||++|++++++|++++++++++++++++++|+++
T Consensus 844 gv~PDivt~gK~lggG~Plgav~~~~ei~~~~~~g--~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~ 921 (1013)
T PRK06148 844 GVVPDIVTMGKPIGNGHPMGAVVTTREIADSFDNG--MEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAG 921 (1013)
T ss_pred CCCcceeeecccccCCcceEEEEEcHHHHhhccCC--CccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988632 2367899999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC--cce--EEecCCcHHH
Q 011959 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAG--FTSLAHSSDD 459 (474)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~--~~~~~~t~e~ 459 (474)
|+++..+++++.+++|.|+|+++++..+.. ...++......+.+.|+++||++.+.+. +.+ .+++++|+++
T Consensus 922 L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~-----~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~ 996 (1013)
T PRK06148 922 LRELQDRFDIIGDVRGMGLFLGIELVTDRK-----TKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRAD 996 (1013)
T ss_pred HHHHHHhCCCceEEeeeceEEEEEecCCcc-----ccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHH
Confidence 999998999999999999999999975321 1234445567889999999999987653 333 3489999999
Q ss_pred HHHHHHHHHHHHhhC
Q 011959 460 IQHTITAAEKVLRQI 474 (474)
Q Consensus 460 i~~~l~~l~~~~~~~ 474 (474)
||+++++|+++++++
T Consensus 997 id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 997 ADHLLEVLDDVLAAA 1011 (1013)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998763
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=499.99 Aligned_cols=368 Identities=29% Similarity=0.410 Sum_probs=323.4
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++.+++|+|+||.|||+||||.+++++++|||+||+|++|+.+|+++.. ..++.++...+|+++|++.. +.+++
T Consensus 17 ~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~-~~~~~ 95 (397)
T TIGR03246 17 APFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDAT-FADKV 95 (397)
T ss_pred CCceEEEeecCEEEeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhC-CCCEE
Confidence 4899999999999999999999999999999999999999999999998743 23356788899999999988 46799
Q ss_pred EEeCCHHHHHHHHHHHhHhhc------CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC
Q 011959 159 RFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 232 (474)
+|++||+|||+.|+|+||.++ +|++||.++++|||++..++..++.......+ .+ ....+..+||||
T Consensus 96 ~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~d 168 (397)
T TIGR03246 96 FFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGF--AP-----LPGGIKHAPYND 168 (397)
T ss_pred EEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCC--CC-----CCCceEEeCCCC
Confidence 999999999999999999885 78999999999999999888877653222111 01 112467889999
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t 311 (474)
++++++++. +++++||+||+++++|.+.|+++||++|+++|++||++||+||||+|| |+|.+++.+++|+.||++|
T Consensus 169 ~~~l~~~l~---~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t 245 (397)
T TIGR03246 169 LAAAKALIS---DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILT 245 (397)
T ss_pred HHHHHHHhc---cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEE
Confidence 999999986 369999999999999999999999999999999999999999999999 9999888899999999999
Q ss_pred hhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
+||++++|+|+||+++++++++.+. ...+.+||++||+++++++++|+.++++++.+++++++++++++|+++..++
T Consensus 246 ~~K~lggG~pigav~~~~~i~~~~~---~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~l~~~~ 322 (397)
T TIGR03246 246 SAKALGGGFPIGAMLTTTEIAAHLK---VGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKINARY 322 (397)
T ss_pred eehhhhCCcceeEEEEcHHHHHhcc---CCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999886 3446789999999999999999998878899999999999999999987778
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHH
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~ 469 (474)
+++.++++.|.++++++.+.. ......+++.|+++|+++.+.+.+.+|+ ++.+|+++|++++++|++
T Consensus 323 ~~~~~vrg~G~~~~i~~~~~~-----------~~~~~~~~~~l~~~Gv~~~~~g~~~lR~~p~~~~t~~~i~~~~~~l~~ 391 (397)
T TIGR03246 323 NVFSEIRGKGLLIGAVLTEAY-----------QGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDEGLARFER 391 (397)
T ss_pred CCeEeeecCceEEEEEEcCch-----------hhHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 888899999999999985320 1234678899999999998876666776 799999999999999999
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
++.+
T Consensus 392 ~l~~ 395 (397)
T TIGR03246 392 AIEQ 395 (397)
T ss_pred HHHH
Confidence 9875
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-63 Score=500.44 Aligned_cols=383 Identities=25% Similarity=0.348 Sum_probs=320.5
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhCCC--C
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVPS--I 155 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---~~~~~~~~la~~l~~~~~~--~ 155 (474)
+|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+++|++++.... .+++...+|+++|++..|+ .
T Consensus 15 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~ 94 (420)
T TIGR00700 15 LPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGP 94 (420)
T ss_pred CCeeEEeeeeeEEEeCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCCCC
Confidence 4899999999999999999999999999999999999999999999999864322 4567789999999999973 4
Q ss_pred CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCC-CccCCC-CCCCCCCCCCCCceE-------
Q 011959 156 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGL-PDSPGVPKGATYETL------- 226 (474)
Q Consensus 156 ~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~-~~~~g~~~~~~~~~~------- 226 (474)
++++|++||+||++.|+|+||.+++|.+||.++++|||++.+++..++.. .....+ |..+++......+.+
T Consensus 95 ~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (420)
T TIGR00700 95 KKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDK 174 (420)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccccccccc
Confidence 79999999999999999999999999999999999999999999877642 111111 111111100000000
Q ss_pred EccCC-CHHHHHHHHh--cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccc
Q 011959 227 TAPFN-DVSALENLFE--NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 302 (474)
Q Consensus 227 ~~~~~-d~~~le~~l~--~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~ 302 (474)
..+++ +++.+++++. .+++++++||+||+++++|.++++++|+++|+++|++||++||+||||+|| |+|.++++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~ 254 (420)
T TIGR00700 175 QLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEH 254 (420)
T ss_pred chhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhh
Confidence 11122 2667887774 356789999999999999999999999999999999999999999999999 9998888899
Q ss_pred cCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 011959 303 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382 (474)
Q Consensus 303 ~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 382 (474)
+++.||++||||++++|||+||+++++++++.+. ...+.+|+++||++|++++++|+.++++++.+++++.++++++
T Consensus 255 ~~~~pDi~~lsK~l~~G~pig~v~~~~~i~~~~~---~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~ 331 (420)
T TIGR00700 255 EGPEPDLITTAKSLADGLPLSGVTGRAEIMDAPA---PGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTD 331 (420)
T ss_pred cCCCCCEEEeeccccCCcceEEEEecHHHHhhcC---CCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999886 3457789999999999999999999888999999999999999
Q ss_pred HHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEE--ecCCcHH
Q 011959 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFT--SLAHSSD 458 (474)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~--~~~~t~e 458 (474)
+|+++..+++.+.++++.|+|+++++.+.. ...++......+.+.|+++||++.|++ .+.+++ +++++++
T Consensus 332 ~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~------~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~ 405 (420)
T TIGR00700 332 RLTTLKAVDPRIGDVRGLGAMIAVELVDPG------TTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDE 405 (420)
T ss_pred HHHHHHhhCCCEEEeeccceEEEEEEecCC------CCCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHH
Confidence 999988888888899999999999996421 112344556788889999999999864 245565 4578999
Q ss_pred HHHHHHHHHHHHHh
Q 011959 459 DIQHTITAAEKVLR 472 (474)
Q Consensus 459 ~i~~~l~~l~~~~~ 472 (474)
+|++++++|+++++
T Consensus 406 ~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 406 LLSEGLDILCAILA 419 (420)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-63 Score=500.45 Aligned_cols=384 Identities=25% Similarity=0.332 Sum_probs=317.7
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHhhCC-CCC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVP-SIE 156 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~la~~l~~~~~-~~~ 156 (474)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+++|+++.. .++..++...+|+++|++.+| +.+
T Consensus 28 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~ 107 (442)
T PRK13360 28 APRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGLN 107 (442)
T ss_pred CCceEEeeeeeEEEeCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCCCC
Confidence 4889999999999999999999999999999999999999999999998742 234568888999999999997 578
Q ss_pred eEEEeCCHHHHHHHHHHHhHhhc------CCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCC-ceEEc
Q 011959 157 MVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATY-ETLTA 228 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~-~~~~~ 228 (474)
+|+|+|||+||++.|+|+||.++ +|.+||.+.++|||++.++++.++.......+ +..+++...... .....
T Consensus 108 ~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~ 187 (442)
T PRK13360 108 HVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARN 187 (442)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhcc
Confidence 99999999999999999999885 57899999999999999999888754322111 111111000000 00111
Q ss_pred cCC---------CHHHHHHHHhcC-CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC
Q 011959 229 PFN---------DVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (474)
Q Consensus 229 ~~~---------d~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (474)
++. ++++||++++.+ ++++++||+||+++++|.+.|+++||++|+++|++||++||+||||+|| |+|.+
T Consensus 188 ~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~ 267 (442)
T PRK13360 188 AFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAP 267 (442)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccc
Confidence 111 256788888643 4689999999999999999999999999999999999999999999999 99999
Q ss_pred ccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCC----CcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 298 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 298 ~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~----~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
++++++|+.||++||||++++| +|+|++++++++++.+.... ..++.+||++||++|++++++|++++++++.++
T Consensus 268 ~a~~~~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~ 347 (442)
T PRK13360 268 FAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTR 347 (442)
T ss_pred hhhhhcCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999988 79999999999999875321 235778999999999999999999988889999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE-
Q 011959 373 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 451 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~- 451 (474)
++++++++++.|+++. +++.+.++++.|++.++++..... .+......+.+.|+++||++.+.+ ..+++
T Consensus 348 ~~~~g~~l~~~l~~l~-~~~~v~~vrG~Gl~~~~~l~~~~~--------~~~~~~~~~~~~l~~~Gvl~~~~~-~~lr~~ 417 (442)
T PRK13360 348 AARLAPYWEDALHSLR-DAPHVIDIRNLGLVGAVELAPRDG--------KPGKRAYEVFLKCFEKGLMIRYTG-DILALS 417 (442)
T ss_pred HHHHHHHHHHHHHHhh-cCCCeeeeeccceEEEEEEecCCC--------CcchhHHHHHHHHHHCCcEEEecC-CEEEEe
Confidence 9999999999999874 477788999999999999964211 112234567888999999998765 34555
Q ss_pred -ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 452 -SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 452 -~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
++.+|++|||+++++|+++++++
T Consensus 418 Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 418 PPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999998764
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-63 Score=498.23 Aligned_cols=368 Identities=25% Similarity=0.351 Sum_probs=313.7
Q ss_pred eEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--C-CCCCHHHHHHHHHHHhhCC-CCCeE
Q 011959 83 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SIEMV 158 (474)
Q Consensus 83 ~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~-~~~~~~~~~la~~l~~~~~-~~~~v 158 (474)
+++++++|+|+||.|||+||||.+++|+.++||+||+|.+|+++|+++... + ++.++...+|+++|++..| +.++|
T Consensus 28 ~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v 107 (429)
T PRK06173 28 YPVERADGVMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKI 107 (429)
T ss_pred ceEEeceeeEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCcCEE
Confidence 468999999999999999999999999999999999999999999998542 2 3578889999999999998 57899
Q ss_pred EEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCC-ccCCC-CCCCCCCCCCCCceEEccC
Q 011959 159 RFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTAPF 230 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~-~~~~~-~~~~g~~~~~~~~~~~~~~ 230 (474)
+|++||+||++.|+|+||.+ ++|.+||.+.++|||.+.++++.++... ....+ +..+. +..+|+
T Consensus 108 ~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~--------~~~~~~ 179 (429)
T PRK06173 108 FFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPV--------QYFLPQ 179 (429)
T ss_pred EEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCC--------CeEeCC
Confidence 99999999999999999988 4688999999999999988887765311 11111 11111 111111
Q ss_pred -----------CCHHHHHHHHhcCCCCeEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC
Q 011959 231 -----------NDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (474)
Q Consensus 231 -----------~d~~~le~~l~~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (474)
++++.|++.++++++++++||+||+ ++++|.+.|+++|+++|+++|++||++||+||||+|| |+|.+
T Consensus 180 p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~ 259 (429)
T PRK06173 180 PSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKL 259 (429)
T ss_pred CCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcc
Confidence 1477788888766678999999997 9999999999999999999999999999999999999 99999
Q ss_pred ccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC--CCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHH
Q 011959 298 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 374 (474)
Q Consensus 298 ~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 374 (474)
|+++++|+.||++||||+++|| +|++++++++++++.+... ....+++||++||++|++++++|+++++++++++++
T Consensus 260 ~a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~ 339 (429)
T PRK06173 260 FALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQ 339 (429)
T ss_pred hHHHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999999999999 5999999999999988531 124577899999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--e
Q 011959 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--S 452 (474)
Q Consensus 375 ~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~ 452 (474)
+++++|++.|+++ .+++.+.++++.|+|+++++.+.. ....+.+.|+++||++.+.+ +.+++ +
T Consensus 340 ~~g~~l~~~L~~~-~~~~~v~~vRg~Gl~~~iel~~~~-------------~~~~i~~~l~e~Gi~v~~~g-~~l~~~Pp 404 (429)
T PRK06173 340 RIEAQLKQELAPA-AEFDSVAEVRVLGAIGVVEMKEPV-------------NMATLQPRFVEHGIWVRPFG-KLVYIMPP 404 (429)
T ss_pred HHHHHHHHHHHHh-hcCCCeeeeeccceEEEEEeCCcc-------------cHHHHHHHHHHCCeEEEecC-CEEEEeCC
Confidence 9999999999976 456777889999999999995421 12568889999999998875 45544 7
Q ss_pred cCCcHHHHHHHHHHHHHHHhh
Q 011959 453 LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+++|++|+++++++|++++++
T Consensus 405 l~it~~ei~~~~~~l~~~l~~ 425 (429)
T PRK06173 405 FIISPDELSQLTSGLLRVLKQ 425 (429)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-63 Score=495.42 Aligned_cols=393 Identities=20% Similarity=0.214 Sum_probs=313.8
Q ss_pred CCchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHH
Q 011959 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127 (474)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~ 127 (474)
...+++++++++++++++. +.+ .+|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+++|
T Consensus 17 ~~~~~s~~l~~~~~~~~~~------~~~----~~p~~~~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q 86 (464)
T TIGR00699 17 IPGPKSKAAMKQLNEVFDA------RAV----HFLADYEKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSP 86 (464)
T ss_pred CCCccHHHHHHHHHhhhcc------cCc----ccceEEEecccCEEEeCCCCEEEEccCCHhhhcCCCCCHHHHHHHHHH
Confidence 4467788999998877522 111 248999999999999999999999999999999999999999999985
Q ss_pred -HH-hcC-CCCCCCHHHHHHHHHHHh----hCC-CCCeEEEeCCHHHHHHHHHHHhHhhcC-------------------
Q 011959 128 -MK-KGT-SFGAPCLLENVLAEMVIS----AVP-SIEMVRFVNSGTEACMGVLRLARAFTG------------------- 180 (474)
Q Consensus 128 -~~-~~~-~~~~~~~~~~~la~~l~~----~~~-~~~~v~~~~sGseA~~~al~~ar~~~~------------------- 180 (474)
+. ... ...+.+....+|+++|.+ ..| +.++|+|+|||+||++.|||+||.+++
T Consensus 87 ~~~~~l~~~~~~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~ 166 (464)
T TIGR00699 87 EMATTLINRPALGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCM 166 (464)
T ss_pred HHHHhhcccccCCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Confidence 33 322 223566677888888754 676 578999999999999999999987732
Q ss_pred --------CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCc-----------eEEccCCCHHHHHHHHh
Q 011959 181 --------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYE-----------TLTAPFNDVSALENLFE 241 (474)
Q Consensus 181 --------~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~-----------~~~~~~~d~~~le~~l~ 241 (474)
+.+||.++++|||++.++++.++........+....+....... ......++++.++++++
T Consensus 167 ~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 246 (464)
T TIGR00699 167 DNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIK 246 (464)
T ss_pred cccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHH
Confidence 23899999999999999999887532111011001110000000 00111235778889998
Q ss_pred cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCC--CceeehhhhcC-
Q 011959 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT--PDLTTLGKIIG- 317 (474)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~--pdi~t~sK~l~- 317 (474)
++++++++||+||+++++|.+.|+++||++|+++|++||++||+|||++|| |+|.+|+++++|+. ||++|+||+++
T Consensus 247 ~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~gK~lg~ 326 (464)
T TIGR00699 247 KWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQT 326 (464)
T ss_pred hcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEehhhhcc
Confidence 766789999999999999999999999999999999999999999999999 99999999999997 99999999996
Q ss_pred CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-CeeE
Q 011959 318 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAIC 396 (474)
Q Consensus 318 ~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~ 396 (474)
+|+. +++ +. +.......+++||++||++|++++++|+.++++++.+++++++++|+++|+++..+++ .+.+
T Consensus 327 gG~~----~~~-~~---~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~ 398 (464)
T TIGR00699 327 AGYF----FHD-PA---FRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQN 398 (464)
T ss_pred CCcc----ccc-hh---ccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceee
Confidence 6753 233 22 2222245688999999999999999999999999999999999999999999988888 7889
Q ss_pred Ee--eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHH
Q 011959 397 GG--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 397 v~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~ 471 (474)
++ +.|+|+++++.+ ......+.+.|+++|+++.+.+.+.+++ ++++|++|||+++++|++++
T Consensus 399 vRg~G~Glm~gie~~~-------------~~~~~~i~~~~~~~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 399 LRGKGRGTFIAWDTPD-------------EAKRDKLLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred ecccCeEEEEEEecCC-------------HHHHHHHHHHHHHCCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 99 999999999832 1234678899999999998876555555 79999999999999999864
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-63 Score=498.19 Aligned_cols=398 Identities=30% Similarity=0.509 Sum_probs=330.8
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccC-CCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc
Q 011959 53 SEEAFNVAKELMPGGVNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG 131 (474)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~ 131 (474)
|.++++++++++|+|++++.|.+.++. ..|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|++++
T Consensus 1 s~~l~~~a~~~~p~g~~~~~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~ 80 (431)
T PRK06209 1 SQLLQSRLHALIPGGAHTYAKGDDQYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDG 80 (431)
T ss_pred CHHHHHHHHhhCCCCCCCCccccccCCCCCCeEEEeccCCEEEeCCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhC
Confidence 468999999999999998888775443 3589999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEE-eCCCCCCchhHHHhcCCCCccCC
Q 011959 132 TSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF-EGCYHGHADPFLVKAGSGVATLG 210 (474)
Q Consensus 132 ~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~-~~~yhg~~~~~~~~~g~~~~~~~ 210 (474)
..++.+...+.+|+++|.+.+|+.++++|+|||+||++.|+|+||.+++|.+|+.+ .++|||+..+....+
T Consensus 81 ~~~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~-------- 152 (431)
T PRK06209 81 CNFTRPSAIELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTT-------- 152 (431)
T ss_pred cCCCCCCHHHHHHHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccC--------
Confidence 76666777788999999999987789999999999999999999999999999999 678887543322110
Q ss_pred CCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 011959 211 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290 (474)
Q Consensus 211 ~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (474)
+...+.+.........++|||+++|+++++++++++++||+||++++ .|+++||++|+++|++||++||+||||+
T Consensus 153 -~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~t 227 (431)
T PRK06209 153 -PMSAGIPASVSALTVTFRYNDIASLEALFEDHPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMIT 227 (431)
T ss_pred -CCCCCCChhHhccccccCCCCHHHHHHHHHhCCCCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 11112111112235678899999999999876678999999999876 7789999999999999999999999999
Q ss_pred CcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHh--hcC---CCCcccccCCCCChHHHHHHHHHHHHhc
Q 011959 291 GFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEM--VAP---AGPMYQAGTLSGNPLAMTAGIHTLKRLK 365 (474)
Q Consensus 291 g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~--~~~---~~~~~~~~t~~~~~~~~aaa~aal~~~~ 365 (474)
||+.+..+..+++|+.||++|+||++|+|+|+|++++++++++. +.. .+.+.+.+|+++||++|++++++|++++
T Consensus 228 G~~~~~~g~~~~~gv~PDi~t~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~ 307 (431)
T PRK06209 228 GFRWHMRGAQKLYGIVPDLSCFGKALGNGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYR 307 (431)
T ss_pred cCCcCcchhhHHhCCCcceeeehhhhcCCcccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHh
Confidence 99323344556789999999999999999999999999999987 321 1223477899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC
Q 011959 366 EPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ 445 (474)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~ 445 (474)
+++++++++++++++++.|+++..++++..++++.|.++.+++...... ..+.......+.+.|+++|+++.
T Consensus 308 ~~~~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gi~~p--- 379 (431)
T PRK06209 308 DEDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGN-----GQPSQAFRTLFLQETIRRGVLMP--- 379 (431)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcc-----cCCcHHHHHHHHHHHHHCCcccc---
Confidence 8899999999999999999998888898888999999888887532110 11223334578889999999873
Q ss_pred CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 446 FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 ~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.++++..||++||++++++|++++++
T Consensus 380 --~l~is~~ht~~dId~~l~~l~~~l~~ 405 (431)
T PRK06209 380 --SLVVSYAHGDADIERTIDAVHGALGV 405 (431)
T ss_pred --cccccccCCHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999998865
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-63 Score=497.64 Aligned_cols=377 Identities=27% Similarity=0.383 Sum_probs=324.2
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--C-CCCCHHHHHHHHHHHhhCC-CCC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SIE 156 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~-~~~~~~~~~la~~l~~~~~-~~~ 156 (474)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|++++.. + +++++...+|+++|++.+| +.+
T Consensus 24 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~ 103 (423)
T PRK05964 24 PPIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGLD 103 (423)
T ss_pred CCeeEEeccccEEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 48999999999999999999999999999999999999999999999998542 2 4578889999999999998 578
Q ss_pred eEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC
Q 011959 157 MVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 230 (474)
+++|++||+||++.|+|+||.+ ++|.+||.++++|||++.+++..++....... ..+.. .....+.+|+
T Consensus 104 ~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~---~~~~~--~~~~~~~~~~ 178 (423)
T PRK05964 104 HVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHAL---YTPLL--FEQVTAPFPP 178 (423)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCcccccc---ccCcC--CCCEEeCCCc
Confidence 9999999999999999999988 68899999999999999999988765432211 11111 1123556666
Q ss_pred CC-----HHHHHHHHhcCCCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcccccc
Q 011959 231 ND-----VSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 303 (474)
Q Consensus 231 ~d-----~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~ 303 (474)
+| +++++++++++++++++||+|| +++++|.+.++++||++|+++|++||++||+||||+|| |+|.+++++++
T Consensus 179 ~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~ 258 (423)
T PRK05964 179 DGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQA 258 (423)
T ss_pred chhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhc
Confidence 77 8889999987777899999999 69999999999999999999999999999999999999 99988888999
Q ss_pred CCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC---CCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 011959 304 GVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 379 (474)
Q Consensus 304 g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 379 (474)
|+.||++++||++++| +|+|++++++++++.+... ....+++||++||+++++++++|+.++++++.+++++++++
T Consensus 259 ~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~ 338 (423)
T PRK05964 259 GVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAG 338 (423)
T ss_pred CCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999988 7999999999999988531 23457789999999999999999999888899999999999
Q ss_pred HHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcH
Q 011959 380 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSS 457 (474)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~ 457 (474)
+++.|+++. .++.+.++++.|+|+++++.+++. ......+.+.|+++||++.+.+ +.+++ ++.+|+
T Consensus 339 l~~~l~~l~-~~~~i~~vrg~Gl~~~i~l~~~~~----------~~~~~~l~~~l~~~Gv~v~~~~-~~lR~~p~l~~t~ 406 (423)
T PRK05964 339 LAEGLEPFR-DLPGVADVRVLGAIGAVELDRPVL----------ERDGPALRAFALERGVLLRPLG-NTIYLMPPYIITA 406 (423)
T ss_pred HHHHHHhhc-cCCCeEEeecccEEEEEEeccCcc----------hhHHHHHHHHHHHCCeEEEecC-CEEEEeCCcccCH
Confidence 999999873 466677899999999999964310 1234678899999999998865 45555 578999
Q ss_pred HHHHHHHHHHHHHHhhC
Q 011959 458 DDIQHTITAAEKVLRQI 474 (474)
Q Consensus 458 e~i~~~l~~l~~~~~~~ 474 (474)
+|||+++++|+++++++
T Consensus 407 edId~~v~~l~~al~~~ 423 (423)
T PRK05964 407 EELDRITDAIVEVADEL 423 (423)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999875
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-63 Score=497.25 Aligned_cols=384 Identities=27% Similarity=0.361 Sum_probs=316.6
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHHhhCC-CCC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVP-SIE 156 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~la~~l~~~~~-~~~ 156 (474)
.|+++.+++|+|+||.|||+||||.+++++.++||+||+|.+|+++|+++.. .+.+.++...+|+++|++.+| +.+
T Consensus 31 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p~~~~ 110 (445)
T PRK09221 31 APRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGGLD 110 (445)
T ss_pred CCceEEeccccEEEeCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 4789999999999999999999999999999999999999999999998742 233568888999999999997 478
Q ss_pred eEEEeCCHHHHHHHHHHHhHhhc------CCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCc-eEEc
Q 011959 157 MVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYE-TLTA 228 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~-~~~~ 228 (474)
+|+|++||+||++.|+|+||.++ ++.+||.+.++|||.+.++++.++.......+ +..+++....... ....
T Consensus 111 ~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (445)
T PRK09221 111 HVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPEN 190 (445)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCcccccc
Confidence 99999999999999999999885 47799999999999999999887653222111 1111111000000 0000
Q ss_pred cCC---------CHHHHHHHHhcC-CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC
Q 011959 229 PFN---------DVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (474)
Q Consensus 229 ~~~---------d~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (474)
++. .+++++++++.+ ++++++||+||+++++|.+.|+++||++|+++|++||++||+||||+|| |+|.+
T Consensus 191 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~ 270 (445)
T PRK09221 191 AFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAA 270 (445)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchh
Confidence 111 146788888754 3689999999999999999999999999999999999999999999999 99999
Q ss_pred ccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCC----CcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 298 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 298 ~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~----~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
++++++|+.||++|+||++++| +|+|++++++++++.+.... ...+.+||++||++|++++++|+.++++++.++
T Consensus 271 ~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~ 350 (445)
T PRK09221 271 FAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFER 350 (445)
T ss_pred hHHHhcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999988 79999999999999875311 234778999999999999999999988899999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE-
Q 011959 373 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 451 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~- 451 (474)
++++++++++.|+++ .+++.+.++++.|+|.++++..... .+......+.+.|+++||++.+.+ ..+++
T Consensus 351 ~~~~g~~l~~~l~~l-~~~~~v~~vrg~Gl~~~v~~~~~~~--------~~~~~~~~~~~~~~~~Gv~~~~~~-~~lr~~ 420 (445)
T PRK09221 351 AAELAPYFEDAVHSL-KGLPHVIDIRNIGLVAGIELAPRPG--------APGARGYEAFMKCFEKGLLVRYTG-DTIALS 420 (445)
T ss_pred HHHHHHHHHHHHHhh-ccCCCEEEEecCceEEEEEEecccc--------cccchHHHHHHHHHHCCeEEeecC-CEEEEE
Confidence 999999999999987 3577788999999999999964211 011223567889999999997754 34555
Q ss_pred -ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 452 -SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 452 -~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
++++|++|||+++++|+++++++
T Consensus 421 Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 421 PPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhh
Confidence 58999999999999999998764
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=493.75 Aligned_cols=369 Identities=24% Similarity=0.379 Sum_probs=313.7
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CC--CCCCCHHHHHHHHHHHhhC--C-C
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TS--FGAPCLLENVLAEMVISAV--P-S 154 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~--~~~~~~~~~~la~~l~~~~--~-~ 154 (474)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+++|+++. .. ....++...+|+++|++.. | +
T Consensus 17 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~ 96 (412)
T TIGR02407 17 FPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRG 96 (412)
T ss_pred CCceEEecccCEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccC
Confidence 489999999999999999999999999999999999999999999999863 21 2235788899999999975 3 2
Q ss_pred C-CeEEE-eCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC--
Q 011959 155 I-EMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-- 230 (474)
Q Consensus 155 ~-~~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-- 230 (474)
. ++++| +|||+||++.|+|+||.+++|.+||.++++|||++.++++.++.......+ +.+ ...+..+|+
T Consensus 97 ~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~----~~~---~~~~~~~p~~~ 169 (412)
T TIGR02407 97 LDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGA----GVP---LSNVSRMPYDG 169 (412)
T ss_pred CCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCC----CCC---CCCeEECCCCC
Confidence 3 35766 499999999999999999999999999999999999999988754322111 110 113455555
Q ss_pred ------CCHHHHHHHHhcCC---CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccc
Q 011959 231 ------NDVSALENLFENNK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ 300 (474)
Q Consensus 231 ------~d~~~le~~l~~~~---~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~ 300 (474)
++++.+++++.+++ +++++||+||+++++|.+.++++||++|+++|++||++||+||||+|| |+|.++++
T Consensus 170 ~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~ 249 (412)
T TIGR02407 170 YLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSF 249 (412)
T ss_pred ccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHh
Confidence 35788899887543 578999999999999999999999999999999999999999999999 99999999
Q ss_pred cccCCCCceeehhhhcCC-CcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-hcCCCHHHHHHHHHH
Q 011959 301 EYFGVTPDLTTLGKIIGG-GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKEPGTYEYLNKITG 378 (474)
Q Consensus 301 ~~~g~~pdi~t~sK~l~~-G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-~~~~~~~~~~~~~~~ 378 (474)
+++++.||++++||++++ |+|+|++++++++ +.+. ...+.+||++||++|+++.++|+. ++++++.+++++.++
T Consensus 250 ~~~~v~PDi~~~~K~lg~~G~pigav~~~~~~-~~~~---~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~ 325 (412)
T TIGR02407 250 EPAGIEPDIVCLSKSISGYGLPLALTLIKPEL-DVWK---PGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSE 325 (412)
T ss_pred cccCCCCCEEEechhccCCccceeEEEEchhh-hccC---CCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 999999999999999998 9999999999886 5554 345788999999999999999995 777889999999999
Q ss_pred HHHHHHHHHhhhcC-CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC--cceE--Eec
Q 011959 379 ELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGF--TSL 453 (474)
Q Consensus 379 ~l~~~L~~~~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~--~~~ 453 (474)
+++++|+++..+++ .+.++++.|+|+++++.+. .....+.+.|+++||++.+.+. +.++ +++
T Consensus 326 ~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~~-------------~~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l 392 (412)
T TIGR02407 326 IIQERLDRIVAEYPELIKQVRGRGLMQGIECGDG-------------DLAGKIAKAAFENGLIIETSGPNDEVIKLLPPL 392 (412)
T ss_pred HHHHHHHHHHhhCCCceEeeecceeEEEEEecCh-------------HHHHHHHHHHHHCCCEEeccCCCCCEEEEECCC
Confidence 99999999888787 6789999999999999531 2346788999999999987543 3445 479
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q 011959 454 AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~~t~e~i~~~l~~l~~~~~~ 473 (474)
++|++|+++++++|++++++
T Consensus 393 ~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 393 TIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999864
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-63 Score=494.89 Aligned_cols=375 Identities=20% Similarity=0.292 Sum_probs=310.7
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--C-CCCCHHHHHHHHHHHhhCC-CCC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SIE 156 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~-~~~~~~~~~la~~l~~~~~-~~~ 156 (474)
.|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|+++... + +..++...+|+++|++..| +.+
T Consensus 22 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 101 (422)
T PRK05630 22 RNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNGLD 101 (422)
T ss_pred CCeeEEeceeeEEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCCcC
Confidence 48999999999999999999999999999999999999999999999998532 2 3467888999999999987 478
Q ss_pred eEEEeCCHHHHHHHHHHHhHhhc------CCcEEEEEeCCCCCCchhHHHhcCCCC-ccCCC-CCCCCCCCCCCCceEEc
Q 011959 157 MVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTA 228 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~-~~~~~-~~~~g~~~~~~~~~~~~ 228 (474)
+++|++||+||++.|+|+||.++ +|.+||.+.++|||.+.++++.++... ....+ |..++............
T Consensus 102 ~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 181 (422)
T PRK05630 102 HVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGS 181 (422)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCC
Confidence 99999999999999999999985 578999999999999999998766321 11000 11111100000000011
Q ss_pred cCCC----HHHHHHHHhcCCCCeEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccc
Q 011959 229 PFND----VSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 302 (474)
Q Consensus 229 ~~~d----~~~le~~l~~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~ 302 (474)
++++ .+.+++++. +++++||+||+ ++.+|.+.|+++|+++|+++|++||++||+|||++|| |+|.++++++
T Consensus 182 ~~~~~~~~~~~~~~~~~---~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~ 258 (422)
T PRK05630 182 SPQEISEYLRSLELLID---ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLA 258 (422)
T ss_pred ChHHHHHHHHHHHHHHh---hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHh
Confidence 1222 244555554 47999999996 9999999999999999999999999999999999999 9999999999
Q ss_pred cCCCCceeehhhhcCCCc-ceEEEEecHHHHHhhcCC---CCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 011959 303 FGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 378 (474)
Q Consensus 303 ~g~~pdi~t~sK~l~~G~-~iG~~~~~~~i~~~~~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~ 378 (474)
+|+.||++||||+++||+ |+|++++++++++.+... +.+.|++||++||++|++++++|+.+++++++++++++++
T Consensus 259 ~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~ 338 (422)
T PRK05630 259 AGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEA 338 (422)
T ss_pred cCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 999999999999999995 999999999999988531 2346789999999999999999999988899999999999
Q ss_pred HHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceE--EecCCc
Q 011959 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHS 456 (474)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~--~~~~~t 456 (474)
+|++.|+++. +++.+.++|+.|+|+++++.++. ....+.+.|+++|+++.+.+ +.++ +++++|
T Consensus 339 ~l~~~L~~l~-~~~~v~~vRg~Gl~~~ie~~~~~-------------~~~~~~~~~~~~Gl~~~~~g-~~l~~~PpL~it 403 (422)
T PRK05630 339 ELIAGLSPLA-HLPGVADVRVLGAIGVVEMEQPV-------------DMEEATQAAVDHGVWLRPFG-RLVYVMPPYITT 403 (422)
T ss_pred HHHHHHHHhh-cCCCeeeeeccccEEEEEECCcc-------------cHHHHHHHHHHCCeEEEecC-CEEEEECCccCC
Confidence 9999998764 47778899999999999996421 12467889999999998765 4445 479999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011959 457 SDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 457 ~e~i~~~l~~l~~~~~~ 473 (474)
++|||+++++|+++++.
T Consensus 404 ~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 404 SEQIAQICAALAAAVKA 420 (422)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999864
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-63 Score=483.01 Aligned_cols=350 Identities=27% Similarity=0.383 Sum_probs=304.9
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCCCCCeEE
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMVR 159 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~~~v~ 159 (474)
|+.+.+++|+|+||.|||+||||.+++++.++||+||+|++|+++|+++.... .+.++...+|++++++.. +.++++
T Consensus 7 ~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~ 85 (364)
T PRK04013 7 RLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWV-NYEYVY 85 (364)
T ss_pred CccEEEeecCEEEECCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhc-CCCEEE
Confidence 88899999999999999999999999999999999999999999999985322 357888999999999988 568999
Q ss_pred EeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHH
Q 011959 160 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (474)
Q Consensus 160 ~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~ 239 (474)
|+|||+||++.|+|+||.+++|++||.++++|||++.+++..++.......+ .+. ..++..+|+||++.+++.
T Consensus 86 ~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~--~p~-----~~~~~~~~~~d~~~l~~~ 158 (364)
T PRK04013 86 MGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDF--EPL-----VPGFKHIPFNDVEAAKEA 158 (364)
T ss_pred EeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCC--CCC-----CCCcEEecCCCHHHHHHH
Confidence 9999999999999999999999999999999999999998877653322111 111 124567889999999998
Q ss_pred HhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcCCC
Q 011959 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGG 319 (474)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G 319 (474)
+. +++++||+||+++++|.++++++||++|+++|++||++||+|||++|||+|.+|+++++++.||++|+||++++|
T Consensus 159 i~---~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~~gK~lggG 235 (364)
T PRK04013 159 IT---KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTMGKGIGNG 235 (364)
T ss_pred hc---CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEEecccccCC
Confidence 86 479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee
Q 011959 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (474)
+|+|+++.++++ . ...+++||++||++|++++++|+.++++++.+++++. |+++. .+.+.++||
T Consensus 236 ~P~~a~~~~~~~----~---~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~-------l~~l~--~~~v~~vRG 299 (364)
T PRK04013 236 VPVSLTLTNFDV----E---RGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK-------FIEIK--GERVVTTRG 299 (364)
T ss_pred ceeEEEEecccc----c---CCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH-------HHHhc--cCcceeeee
Confidence 999999998775 2 2357889999999999999999999999999888764 23332 266889999
Q ss_pred eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.|+|++++|..+ ...+.+.|+++|+++.+.+.+.+++ ++++|++++++++++|++++++
T Consensus 300 ~Gl~~gve~~~~---------------~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~ 360 (364)
T PRK04013 300 RGLMIGIVLKKP---------------VGKYVEELQNRGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVIND 360 (364)
T ss_pred CcEEEEEEeCCc---------------HHHHHHHHHhCCcEEeeCCCCEEEEeCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999531 2467889999999998876555554 7999999999999999999875
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=487.06 Aligned_cols=362 Identities=25% Similarity=0.393 Sum_probs=316.7
Q ss_pred EEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhhCCCCCeEEEeC
Q 011959 85 FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEMVRFVN 162 (474)
Q Consensus 85 ~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~~~~~v~~~~ 162 (474)
+++++|+|+||.|||+||||.+++++.++||+||+|.+|+++|++++..++ +.++...+|+++|++.. +.++|+|++
T Consensus 1 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v~f~~ 79 (382)
T PLN00144 1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASS-FADRVFFCN 79 (382)
T ss_pred CeeeeccEEEeCCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcC-CCCeEEEeC
Confidence 468999999999999999999999999999999999999999999864332 35788899999999987 467999999
Q ss_pred CHHHHHHHHHHHhHhhcC-------------CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEcc
Q 011959 163 SGTEACMGVLRLARAFTG-------------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229 (474)
Q Consensus 163 sGseA~~~al~~ar~~~~-------------~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 229 (474)
||+||++.|+|+||.+++ +.+||.++++|||++.+++..++...... +..+.. ..+..+|
T Consensus 80 sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~--~~~~~~-----~~~~~~~ 152 (382)
T PLN00144 80 SGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRT--PFEPLM-----PGVTFVE 152 (382)
T ss_pred CcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccc--cCCCCC-----CCeEEeC
Confidence 999999999999999875 47899999999999999998877543221 111222 2367789
Q ss_pred CCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCc
Q 011959 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 308 (474)
Q Consensus 230 ~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pd 308 (474)
+||++.|++.+.. +++++||+||+++++|.+.++.+|+++|+++|++||++||+||||+|| |+|.+++++++++.||
T Consensus 153 ~~d~~~l~~~~~~--~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD 230 (382)
T PLN00144 153 YGNLEAARKLIQK--GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD 230 (382)
T ss_pred CCCHHHHHHhcCC--CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC
Confidence 9999999998863 479999999999999999999999999999999999999999999999 9998888888999999
Q ss_pred eeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Q 011959 309 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388 (474)
Q Consensus 309 i~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~ 388 (474)
++||||++++|+|+|++++++++++.+.. ..+.+||++||++|+++.++|+.++++++.++++++++++++.|+++.
T Consensus 231 i~t~sK~l~~G~pig~v~~~~~~~~~~~~---~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~ 307 (382)
T PLN00144 231 IMTLAKPLAGGLPIGAVLVTEKVASAINP---GDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKL 307 (382)
T ss_pred EEEecccccCCcceEEEEEcHHHHhccCC---CCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998863 347789999999999999999999889999999999999999999988
Q ss_pred hhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-cceEE--ecCCcHHHHHHHHH
Q 011959 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFT--SLAHSSDDIQHTIT 465 (474)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~--~~~~t~e~i~~~l~ 465 (474)
.+++.+.++++.|+|+|++|... ...+.+.++++||++.+.+. +.+++ ++++++++++++++
T Consensus 308 ~~~~~~~~vrg~G~~~~l~l~~~---------------~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~~~~~~~i~~~~~ 372 (382)
T PLN00144 308 GGNPHVKEVRGVGLLVGIQLDVP---------------AGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELEQAVE 372 (382)
T ss_pred hhCCCceeeecCceEEEEEecCc---------------cHHHHHHHHHCCeEEeecCCCCEEEEeCCCccCHHHHHHHHH
Confidence 88888889999999999999311 14688899999999998753 45555 67799999999999
Q ss_pred HHHHHHhhC
Q 011959 466 AAEKVLRQI 474 (474)
Q Consensus 466 ~l~~~~~~~ 474 (474)
+|++++.++
T Consensus 373 ~l~~~l~~~ 381 (382)
T PLN00144 373 ILADCLPAL 381 (382)
T ss_pred HHHHHHHhc
Confidence 999998763
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-62 Score=534.53 Aligned_cols=407 Identities=23% Similarity=0.291 Sum_probs=334.8
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHh
Q 011959 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (474)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 130 (474)
+++.+++++.+++++.+.... + ..|+++++++|+|+||.|||+||||.+++ .++||+||+|++|+.+|+.+
T Consensus 544 ~~~~~l~~~~~~~~~~~~~~~---~----~~p~~i~~g~G~~l~D~dG~~ylD~~~~~--~~lGh~hp~v~~Ai~~q~~~ 614 (972)
T PRK06149 544 PDAAALLARRDASFARVQKHY---Y----ADPPQIERGWRHHLFDMAGRSYLDMVNNV--TVLGHGHPRLAAAAARQWSL 614 (972)
T ss_pred CCHHHHHHHHHHhhccchhhc---c----cCCCeEEEeeeeEEEeCCCCEEEECCCCc--cccCCCCHHHHHHHHHHHHh
Confidence 467789999888887665322 1 14789999999999999999999999986 58999999999999999988
Q ss_pred cCCCC-CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCcc
Q 011959 131 GTSFG-APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (474)
Q Consensus 131 ~~~~~-~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (474)
+...+ +..+...+|+++|++.+| +.++++|+|||+|||+.|||+||+++++.+||.++++|||++.+++..++.....
T Consensus 615 l~~~~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~ 694 (972)
T PRK06149 615 LNTNSRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADN 694 (972)
T ss_pred ccccccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCcccc
Confidence 54332 467788999999999998 5789999999999999999999999999999999999999999887765431100
Q ss_pred CCC--CCCCCCCCCCCCceEEccCC--C-----HHHHHHHHh---cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHH
Q 011959 209 LGL--PDSPGVPKGATYETLTAPFN--D-----VSALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 209 ~~~--~~~~g~~~~~~~~~~~~~~~--d-----~~~le~~l~---~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
... +...++......+.+..+|+ + .+++++.++ ++++++++||+||+++++|.+.++++||++|+++|
T Consensus 695 ~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc 774 (972)
T PRK06149 695 PQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAV 774 (972)
T ss_pred ccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHH
Confidence 000 11111111112233343442 2 344444443 34568999999999999999999999999999999
Q ss_pred HHhCCEEEEeccccCc-ccCC-CccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHH
Q 011959 277 KENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 354 (474)
Q Consensus 277 ~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~ 354 (474)
++||+++|+||||||| |+|. +++++++|+.|||+|+||++|+|+|+|++++++++++.+... ..+++|+++||++|
T Consensus 775 ~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~G~Pl~av~~~~~i~~~~~~~--~~~~sT~~gnP~~~ 852 (972)
T PRK06149 775 RARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGHPLGAVITRREIAEALEAE--GYFFSSTGGSPVSC 852 (972)
T ss_pred HHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccCCeeeEEEEEcHHHHhhhccC--CcccCCCCCCHHHH
Confidence 9999999999999999 9997 668999999999999999999999999999999999988642 23457889999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH
Q 011959 355 TAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (474)
Q Consensus 355 aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (474)
++++++|++++++++.+++++++++|+++|+++..+++++.+++|.|+|++++|..+.. ...++......+.+.|
T Consensus 853 aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~-----~~~~~~~~~~~i~~~l 927 (972)
T PRK06149 853 RIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQ-----TLEPATEETAAICDRL 927 (972)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcc-----cCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999988899999999999999999964321 1123445567899999
Q ss_pred HHCCeEecccCC--cceE--EecCCcHHHHHHHHHHHHHHHhh
Q 011959 435 LEEGVYFAPSQF--EAGF--TSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 435 ~~~Gv~v~~~~~--~~~~--~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+++||++.+.+. +.++ +++++|++++|+++++|++++++
T Consensus 928 ~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 928 LELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred HhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 999999998764 3455 47899999999999999999875
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=487.64 Aligned_cols=368 Identities=26% Similarity=0.361 Sum_probs=320.1
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++++++|+|+||.|||+||||.+++++++|||+||+|++|+.+|+++.. ..++.++...+|+++|++.. +.+++
T Consensus 21 ~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v 99 (406)
T PRK12381 21 APFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDAT-FADRV 99 (406)
T ss_pred CCceEEEeecCEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccCccCCHHHHHHHHHHHhhC-CCCeE
Confidence 4789999999999999999999999999999999999999999999998743 22345777899999999987 46899
Q ss_pred EEeCCHHHHHHHHHHHhHhhc------CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC
Q 011959 159 RFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 232 (474)
+|++||+||++.|+|+||.++ ++.+|+.++++|||++..++..++.......+ ..+ ...+..+||||
T Consensus 100 ~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~d 172 (406)
T PRK12381 100 FFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDF---APL----PPDIRHAAYND 172 (406)
T ss_pred EEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCC---CCC----CCCeeEeCCCC
Confidence 999999999999999999885 78899999999999999888887753322111 111 12357789999
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t 311 (474)
++++++.+. +++++||+||+++++|.+.++++|+++|+++|++||++||+||||+|| |+|.+++++++++.||++|
T Consensus 173 ~~~l~~~l~---~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t 249 (406)
T PRK12381 173 LNSASALID---DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLT 249 (406)
T ss_pred HHHHHHhcc---CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEE
Confidence 999999886 379999999999999999999999999999999999999999999999 9998888888999999999
Q ss_pred hhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
|||++++|+|+|++++++++++.+. ...+.+||++||++++++.++|+.+++++++++++++++++++.|+++..++
T Consensus 250 ~sK~l~gG~~ig~~~~~~~~~~~~~---~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~ 326 (406)
T PRK12381 250 TAKALGGGFPIGAMLTTEKCASVMT---VGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINARY 326 (406)
T ss_pred ehhhhhCCCceEEEEEcHHHHhhcC---CCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999886 3456789999999999999999999888899999999999999999987777
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHH
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~ 469 (474)
+.+.++++.|+|+++++.++. ......+.+.|+++||++.+.+.+.+|+ ++.+|+++|++++++|++
T Consensus 327 ~~~~~vrg~Gl~~~~~l~~~~-----------~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~t~~~i~~~~~~l~~ 395 (406)
T PRK12381 327 GLFSEIRGLGLLIGCVLNAEY-----------AGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLDRFAR 395 (406)
T ss_pred CCEEEEecCeEEEEEEecCch-----------hhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCccCCHHHHHHHHHHHHH
Confidence 878899999999999985320 1234678899999999998766566766 577999999999999999
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
++++
T Consensus 396 ~l~~ 399 (406)
T PRK12381 396 ACER 399 (406)
T ss_pred HHHH
Confidence 8865
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-62 Score=490.13 Aligned_cols=369 Identities=25% Similarity=0.379 Sum_probs=310.4
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-C--CCCCCCHHHHHHHHHHHhhCC---C
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-T--SFGAPCLLENVLAEMVISAVP---S 154 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~--~~~~~~~~~~~la~~l~~~~~---~ 154 (474)
+|+++++|+|+|+||.|||+||||.+++++.++||+||+|.+|+++|+++. . .....++...+|+++|++..+ +
T Consensus 21 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~ 100 (425)
T PRK09264 21 FPVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRG 100 (425)
T ss_pred CCccEEeeecCEEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcC
Confidence 388999999999999999999999999999999999999999999999862 2 123457888999999999753 2
Q ss_pred CC-eEEEe-CCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC--
Q 011959 155 IE-MVRFV-NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-- 230 (474)
Q Consensus 155 ~~-~v~~~-~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-- 230 (474)
.+ +++|+ |||+||++.|+|+||.+++|.+||.++++|||++.++++.++........ +.+ ..++..+|+
T Consensus 101 ~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~----~~~---~~~~~~~p~~~ 173 (425)
T PRK09264 101 LDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGA----GVP---LNNVTRMPYDG 173 (425)
T ss_pred CCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCC----CCC---CCCeEEeCCCC
Confidence 33 67674 89999999999999999999999999999999999999988754322111 100 112444554
Q ss_pred ------CCHHHHHHHHhcCC---CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccc
Q 011959 231 ------NDVSALENLFENNK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ 300 (474)
Q Consensus 231 ------~d~~~le~~l~~~~---~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~ 300 (474)
+|++++++++++++ +++++||+||+++++|++.++++||++|+++|++||++||+||||+|| |+|.++++
T Consensus 174 ~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~ 253 (425)
T PRK09264 174 YFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSF 253 (425)
T ss_pred ccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHH
Confidence 47888999987532 479999999999999999999999999999999999999999999999 99999899
Q ss_pred cccCCCCceeehhhhcCC-CcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHH-HHhcCCCHHHHHHHHHH
Q 011959 301 EYFGVTPDLTTLGKIIGG-GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL-KRLKEPGTYEYLNKITG 378 (474)
Q Consensus 301 ~~~g~~pdi~t~sK~l~~-G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal-~~~~~~~~~~~~~~~~~ 378 (474)
+++++.||++||||++++ |+|+|++++++++. .+. ...+.+||++||+++++++++| +.++++++.++++++++
T Consensus 254 ~~~~v~PDi~t~~K~l~~~G~pigav~~~~~i~-~~~---~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~ 329 (425)
T PRK09264 254 ERAGITPDIVTLSKSISGYGLPMALVLIKPELD-VWK---PGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGE 329 (425)
T ss_pred hhcCCCCCEEEeccccCCCccceEEEEEchhhh-ccC---CCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999999997 99999999998873 443 3456789999999999999999 66666789999999999
Q ss_pred HHHHHHHHHhhhcCC-eeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC--cceEE--ec
Q 011959 379 ELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SL 453 (474)
Q Consensus 379 ~l~~~L~~~~~~~~~-~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~--~~ 453 (474)
+++++|+++..+++. ..++++.|+++++++.+ ......+.+.|+++||++.+.+. ..+++ ++
T Consensus 330 ~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~-------------~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l 396 (425)
T PRK09264 330 LVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGD-------------GELAGKIAAEAFENGLIIETSGPEDEVVKLLPPL 396 (425)
T ss_pred HHHHHHHHHHHhCCCceecceecccEEEEEecC-------------hHHHHHHHHHHHHCCCEEeccCCCCCEEEEeCCC
Confidence 999999998777764 47899999999999853 13346788999999999987653 33444 67
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q 011959 454 AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~~t~e~i~~~l~~l~~~~~~ 473 (474)
++|+++|++++++|++++++
T Consensus 397 ~~t~~ei~~~~~~l~~~l~~ 416 (425)
T PRK09264 397 TIDEEELEEGLDILEEAVAE 416 (425)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999998864
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-62 Score=484.68 Aligned_cols=363 Identities=28% Similarity=0.440 Sum_probs=310.7
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++.+++|+|+||.|||+||||.++++++++||+||+|.+|+++|+++... ....++.+.+|+++|.+.. +.+++
T Consensus 18 ~~~~~~~~~G~~~~d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v 96 (395)
T PRK03715 18 PDIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAFYNEPMAKLAGLLTQHS-CFDKV 96 (395)
T ss_pred CCceEEeeecCEEEECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHhhcc-CCCEE
Confidence 47899999999999999999999999999999999999999999999987532 2246788999999998875 46899
Q ss_pred EEeCCHHHHHHHHHHHhHhhc-----CCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCCC
Q 011959 159 RFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~-----~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d 232 (474)
+|++||+|||+.|+++||.++ ++.+||.++++|||++..++..++.......+ |...+ +...+++|
T Consensus 97 ~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~--------~~~~~~~d 168 (395)
T PRK03715 97 FFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPG--------FPKAELND 168 (395)
T ss_pred EEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCC--------ceeeCCch
Confidence 999999999999999999873 67899999999999999999888754322111 11112 34457889
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t 311 (474)
++++++.+. +++++||+||+++++|.+.|+++|+++|+++|++||++||+||||+|| |+|.+|+++++|+.||++|
T Consensus 169 ~~~l~~~l~---~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t 245 (395)
T PRK03715 169 IASVEKLIT---DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMT 245 (395)
T ss_pred HHHHHHHcC---CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceee
Confidence 999999886 368999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
|||++++|+|+|+++++++++. +. +..+++||++||++|++++++|++++++++++++++++++|+++|+++..++
T Consensus 246 ~gK~lg~G~p~~av~~~~~i~~-~~---~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~ 321 (395)
T PRK03715 246 LGKGIGGGVPLAALLAKAEVAV-FE---AGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEER 321 (395)
T ss_pred ehhhhhCCcceEEEEEcccccc-cc---CCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999863 32 3357889999999999999999999889999999999999999999987777
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC---CeEecccCCcceEE--ecCCcHHHHHHHHHH
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE---GVYFAPSQFEAGFT--SLAHSSDDIQHTITA 466 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~ 466 (474)
+ +.++++.|+|+++++.++ ....+.+.+.+. |+++.+...+.+|+ ++.+|++||++++++
T Consensus 322 ~-i~~vrG~Glm~~i~l~~~--------------~~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p~l~~t~~ei~~~~~~ 386 (395)
T PRK03715 322 G-LEGERGEGLLRALLLGKD--------------IGPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAM 386 (395)
T ss_pred C-cCeEEcceeEEEEEecCc--------------hHHHHHHHHHhccCCCEEEeecCCCEEEEeCCcccCHHHHHHHHHH
Confidence 7 457999999999999542 012344444444 99997666566665 689999999999999
Q ss_pred HHHHHhhC
Q 011959 467 AEKVLRQI 474 (474)
Q Consensus 467 l~~~~~~~ 474 (474)
|+++++++
T Consensus 387 l~~~l~~~ 394 (395)
T PRK03715 387 LRSVLDKL 394 (395)
T ss_pred HHHHHHhh
Confidence 99998764
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-61 Score=490.02 Aligned_cols=394 Identities=26% Similarity=0.394 Sum_probs=332.7
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
..+++++.+..+++...+.. ..|+++++++|+|+||.||++||||.+++++.++||+||+|++|+++|++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~----------~~p~~~~~a~G~~l~d~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~ 105 (474)
T PLN02624 36 SDSSAHLIELEEKYSAHNYH----------PIPVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAE 105 (474)
T ss_pred CcchHHHHHHHHHhhccccC----------CCCceEEeeeeCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHH
Confidence 33456777777776544221 24889999999999999999999999999999999999999999999999
Q ss_pred hcCCC--CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhc--------CCcEEEEEeCCCCCCchhHH
Q 011959 130 KGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCYHGHADPFL 199 (474)
Q Consensus 130 ~~~~~--~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~--------~~~~ii~~~~~yhg~~~~~~ 199 (474)
+.... .+.++...+|+++|++.+ +.++++|+|||+||++.|||+||.++ ++.+||.+.++|||++.+++
T Consensus 106 ~~~~~~~~~~~~~~~~la~~L~~~~-~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~ 184 (474)
T PLN02624 106 KLTLSSRAFYNDKFPEFAEYLTSMF-GYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAI 184 (474)
T ss_pred hcCCcccccCCHHHHHHHHHHHhhc-CCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHh
Confidence 85432 256788899999999988 47899999999999999999999863 34579999999999999999
Q ss_pred HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh
Q 011959 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279 (474)
Q Consensus 200 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~ 279 (474)
+.++.......+ .+.. ..+..+||||++.++++++.+++++++||+||+++++|.+.|+++||++|+++|++|
T Consensus 185 s~~~~~~~~~~~--~~~~-----~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~ 257 (474)
T PLN02624 185 SMSCDNEATRGF--GPLL-----PGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKH 257 (474)
T ss_pred hcCCCccccccC--CCCC-----CCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc
Confidence 887653222111 1111 235677999999999999876678999999999999999999999999999999999
Q ss_pred CCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHH
Q 011959 280 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 357 (474)
Q Consensus 280 g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa 357 (474)
|++||+||||+|| |+|.+++.+++++.||+++|||++++| +|+|++++++++++.+. +..+++||++||++++++
T Consensus 258 gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~---~~~~~~T~~g~pl~~aaa 334 (474)
T PLN02624 258 NVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIK---PGEHGSTFGGNPLASAVA 334 (474)
T ss_pred CCEEEEeccccCcCcCcchhhHHhcCCCCCEEEecccccCCCCcceeeeecHHHHhHhc---cCCcCCCCCCCHHHHHHH
Confidence 9999999999999 999888888899999999999999976 89999999999998876 345778999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH
Q 011959 358 IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 436 (474)
Q Consensus 358 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 436 (474)
.++|+.++++++.+++.+++++++++|+++..+++ .+.++++.|+|+++++..+. .+.....++++.|++
T Consensus 335 ~aaLe~l~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~---------~~~~~a~~~~~~L~e 405 (474)
T PLN02624 335 MAALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPK---------LGPVSAYDVCLKLKE 405 (474)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCC---------cChHHHHHHHHHHHh
Confidence 99999998888999999999999999999877777 46679999999999885321 012334678888999
Q ss_pred CCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 437 EGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 437 ~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+||++.|.+...+|+ ++.+|+++|++++++|+++++.
T Consensus 406 ~GV~v~p~~~~~lR~~p~l~~t~e~id~~l~~L~~~l~~ 444 (474)
T PLN02624 406 RGLLAKPTHDTIIRLAPPLSISEDELQECSKALSDVLEH 444 (474)
T ss_pred CCeEEecCCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 999999887666777 5799999999999999998753
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=488.49 Aligned_cols=375 Identities=21% Similarity=0.295 Sum_probs=307.9
Q ss_pred eEEEeeccCEEEEc-CCCEEEeccCChhhccCCCCCHHHHH--HHHHHHHhcC-----CCCCCCHHHHHHHHHHHhhC-C
Q 011959 83 IVFDSVKGSHMWDI-DGNEYIDYVGSWGPAIIGHADDQVLA--ALGETMKKGT-----SFGAPCLLENVLAEMVISAV-P 153 (474)
Q Consensus 83 ~~~~~~~G~~~~d~-dG~~~iD~~~~~~~~~lG~~~p~v~~--a~~~~~~~~~-----~~~~~~~~~~~la~~l~~~~-~ 153 (474)
+++++++|+|+||. |||+||||.+++++.++||+||+|.+ |+++|+++.. ...+.++...+|+++|++.. |
T Consensus 28 ~~i~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~p 107 (443)
T PRK08297 28 LDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLGD 107 (443)
T ss_pred eEEEeccCCEEEECCCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcCC
Confidence 44899999999995 99999999999999999999999999 9999998632 22456788899999999987 4
Q ss_pred -CCCeEEEeCCHHHHHHHHHHHhHhhc------------CCcEEEEEeCCCCCCchhHHHhcCCCCc-cCCCCCC--CCC
Q 011959 154 -SIEMVRFVNSGTEACMGVLRLARAFT------------GRERIIKFEGCYHGHADPFLVKAGSGVA-TLGLPDS--PGV 217 (474)
Q Consensus 154 -~~~~v~~~~sGseA~~~al~~ar~~~------------~~~~ii~~~~~yhg~~~~~~~~~g~~~~-~~~~~~~--~g~ 217 (474)
+.++|+|+|||+||++.|+|+||.++ +|.+||.+.++|||+++++++.++.... ....+.. ..+
T Consensus 108 ~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~ 187 (443)
T PRK08297 108 PELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRI 187 (443)
T ss_pred CCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCcccc
Confidence 57899999999999999999998773 3578999999999999999998864221 1111111 001
Q ss_pred CCCC-C--------CceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011959 218 PKGA-T--------YETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (474)
Q Consensus 218 ~~~~-~--------~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (474)
+... . .+...+++++++++++++.++++++++||+||+++++|.+.|+++||++|+++|++||++||+|||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV 267 (443)
T PRK08297 188 DNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEV 267 (443)
T ss_pred CCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEech
Confidence 0000 0 001122334577788888877789999999999999999999999999999999999999999999
Q ss_pred ccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcC--CCCcccccCCCCChHHHHHHHHHHHHhc
Q 011959 289 MTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLK 365 (474)
Q Consensus 289 ~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~--~~~~~~~~t~~~~~~~~aaa~aal~~~~ 365 (474)
|||| |+|.+|+++++|+.||++||||+++ +|+++..+++.+.... .....+++||++||++|++++++|+.++
T Consensus 268 ~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~----~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~ 343 (443)
T PRK08297 268 QTGVGLTGTAWAYQQLGVRPDIVAFGKKTQ----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIE 343 (443)
T ss_pred hhccCccchHHHHHhcCCCCCEEEeccccc----ccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999973 5666666665443211 0123578999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhcCCee-EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc
Q 011959 366 EPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS 444 (474)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~ 444 (474)
++++++++++++++++++|+++..+++.+. ++++.|+|++++|.+ ......+.+.|+++||++.+.
T Consensus 344 ~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~~-------------~~~~~~~~~~l~~~Gvl~~~~ 410 (443)
T PRK08297 344 EDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLPT-------------TADRDEVIRRLWEEGVLVLPC 410 (443)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEecC-------------HHHHHHHHHHHHHCCEEEecC
Confidence 899999999999999999999988888665 999999999999953 123467889999999999887
Q ss_pred CCcceEE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 445 QFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 445 ~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+...+++ ++++|+++||+++++|+++++++
T Consensus 411 ~~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 411 GERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred CCCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 6555555 79999999999999999998764
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-60 Score=473.46 Aligned_cols=380 Identities=25% Similarity=0.355 Sum_probs=320.8
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHh
Q 011959 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (474)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 130 (474)
.++++++++.++++..... ..|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~----------~~p~~~~~~~G~~l~d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~ 71 (396)
T PRK04073 2 TKSEKIIELTNHYGAHNYH----------PLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADK 71 (396)
T ss_pred chHHHHHHHHHHhcccccC----------CCCceEEeeeecEEEECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhh
Confidence 4567888877776543221 248899999999999999999999999999999999999999999999998
Q ss_pred cCCC--CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh--------cCCcEEEEEeCCCCCCchhHHH
Q 011959 131 GTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLV 200 (474)
Q Consensus 131 ~~~~--~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~~ 200 (474)
.... ...++...+|+++|++..+ .++++|++||+||++.||++||.+ +++++||.++++|||++..++.
T Consensus 72 ~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~ 150 (396)
T PRK04073 72 VTLTSRAFHSDQLGPWYEKVAKLTG-KDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVS 150 (396)
T ss_pred ccccccccCCHHHHHHHHHHHhcCC-CCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHh
Confidence 5322 3467788999999999874 579999999999999999999987 5788999999999999999988
Q ss_pred hcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC
Q 011959 201 KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280 (474)
Q Consensus 201 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g 280 (474)
.++.......+ .+. ...+..++++|++++++.+. +++++||+||++|++|.+.|+++|+++|+++|++||
T Consensus 151 ~~~~~~~~~~~--~~~-----~~~~~~~~~~d~~~l~~~i~---~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g 220 (396)
T PRK04073 151 LSSEEEYKRGF--GPM-----LPGIKKIPYGDLEALKAAIT---PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEEN 220 (396)
T ss_pred hcCCcccccCC--CCC-----CCCceEeCCCCHHHHHHhcc---cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 87753221111 111 12356788999999999886 368999999999999999999999999999999999
Q ss_pred CEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHH
Q 011959 281 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 358 (474)
Q Consensus 281 ~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~ 358 (474)
++||+||+|+|| ++|.+++.+++++.||+++|||++++| +|+|++++++++++.+. ...+..||++||+++++++
T Consensus 221 ~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~---~~~~~~t~~~~~~~~aaa~ 297 (396)
T PRK04073 221 VLFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFT---PGSHGSTFGGNPLACAVSI 297 (396)
T ss_pred CEEEEecchhCCCcCcHHHHhhhcCCCCCEEEecccccCCCCcceEEEEcHHHHhhhc---CCCCCCCCCCCHHHHHHHH
Confidence 999999999999 888877778889999999999999965 99999999999999886 3346779999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCC
Q 011959 359 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 438 (474)
Q Consensus 359 aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 438 (474)
++|+.++++++.++++++++++.+.|+++. ++.+.++++.|+|+++++... ...+.+.|+++|
T Consensus 298 aaL~~~~~~~l~~~~~~~~~~l~~~L~~l~--~~~i~~~~~~g~~~~~~~~~~---------------~~~~~~~l~~~G 360 (396)
T PRK04073 298 AALEVLEEEKLPERSLELGEYFKEQLKEID--NPMIKEVRGRGLFIGVELNEP---------------ARPYCEALKEEG 360 (396)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhhc--CCcccceecceEEEEEEecch---------------HHHHHHHHHHCC
Confidence 999998778899999999999999998862 344567889999999887421 257888899999
Q ss_pred eEecccCCcceEEe--cCCcHHHHHHHHHHHHHHH
Q 011959 439 VYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 439 v~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~~ 471 (474)
|++.+.+...+|++ +.+|+|++++++++|++++
T Consensus 361 v~~~~~~~~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 361 LLCKETHETVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred eEEecCCCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 99987665667774 7999999999999999876
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-59 Score=468.68 Aligned_cols=365 Identities=27% Similarity=0.402 Sum_probs=317.3
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++++++|+|+||.|||+||||.+|++++++||+||+|++|+++|++++...+ +.++...+|+++|++.. +.+++
T Consensus 13 ~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v 91 (389)
T PRK01278 13 ADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIPEQERLAERLVENS-FADKV 91 (389)
T ss_pred CCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccccCChHHHHHHHHHHhhC-CCCEE
Confidence 4889999999999999999999999999999999999999999999998753322 45788899999999987 46799
Q ss_pred EEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC
Q 011959 159 RFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 232 (474)
+|++||+||++.|++++|.+ +++++||.++++|||++..++..++.......+. + ....+..++++|
T Consensus 92 ~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~d 164 (389)
T PRK01278 92 FFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFG--P-----LVPGFDQVPFGD 164 (389)
T ss_pred EEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCC--C-----CCCCceEeCCCC
Confidence 99999999999999999887 6678999999999999999988776533221110 0 112356678899
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t 311 (474)
++++++.++. ++++|++||+++++|.+.++++|+++|+++|++||++||+||||+|| |+|.+++.+++++.||++|
T Consensus 165 ~~~l~~~l~~---~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t 241 (389)
T PRK01278 165 IEALKAAITP---NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMA 241 (389)
T ss_pred HHHHHHhhCC---CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEE
Confidence 9999999863 79999999999999988899999999999999999999999999999 8888778788899999999
Q ss_pred hhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
|||++++|+|+||+++++++++.+. ...+.+|+++||+++++++++|+.++++++.+++++++++++++|+++...+
T Consensus 242 ~sK~l~~G~~ig~~~~~~~~~~~~~---~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~ 318 (389)
T PRK01278 242 VAKGIGGGFPLGACLATEEAAKGMT---PGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDRF 318 (389)
T ss_pred EehhccCCcceEEEEEcHHHHhccC---CCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999998886 3457789999999999999999998777889999999999999999987667
Q ss_pred C-CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHH
Q 011959 392 G-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 468 (474)
Q Consensus 392 ~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~ 468 (474)
+ ++.++++.|.++++++..+ ..++++.|+++||++.|.+.+.+|++ +++++++|++++++|+
T Consensus 319 ~~~~~~v~g~G~~~~i~~~~~---------------~~~~~~~l~~~GV~~~p~~~~~lR~~p~~~~~~~~i~~~l~~l~ 383 (389)
T PRK01278 319 PDVIEEVRGKGLLLGLKCVVP---------------NRDLVQALRDEGLLTVGAGDNVVRLLPPLIITEEEIDEALERLE 383 (389)
T ss_pred CCceeeEecccEEEEEEEecC---------------HHHHHHHHHHCCeEEeecCCCEEEEeCCcccCHHHHHHHHHHHH
Confidence 6 7778999999999887421 25788999999999999876777774 6799999999999999
Q ss_pred HHHhhC
Q 011959 469 KVLRQI 474 (474)
Q Consensus 469 ~~~~~~ 474 (474)
++++++
T Consensus 384 ~~l~~~ 389 (389)
T PRK01278 384 RAAESL 389 (389)
T ss_pred HHHHhC
Confidence 998764
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-58 Score=463.76 Aligned_cols=368 Identities=28% Similarity=0.399 Sum_probs=317.0
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++.+++|+|+||.||++||||.+|+++++|||+||+|.+++.++++++...+ +.++...+|+++|++.. +.+++
T Consensus 22 ~~~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~ 100 (403)
T PRK05093 22 AEFIPVRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDAT-FAERV 100 (403)
T ss_pred CCeeEEEeecCEEEeCCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhC-CCCEE
Confidence 4889999999999999999999999999999999999999999999998743222 35667789999999987 56899
Q ss_pred EEeCCHHHHHHHHHHHhHhhc------CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC
Q 011959 159 RFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 232 (474)
+|++||+|||+.|+++||.++ ++++||.++++|||++..++..++..... .++.. ...++..+++||
T Consensus 101 ~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~d 173 (403)
T PRK05093 101 FFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYS------DGFGP-KPADITHVPFND 173 (403)
T ss_pred EEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhh------hcCCC-CCCCcEEeCCCC
Confidence 999999999999999999885 68899999999999999887776542211 11111 122467889999
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t 311 (474)
++.+++.+. +++++||+||+++++|.+.++++|+++|+++|++||+++|+||||+|| ++|.+++.+++++.||+.+
T Consensus 174 ~~~l~~~l~---~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s 250 (403)
T PRK05093 174 LAAVKAVID---DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILT 250 (403)
T ss_pred HHHHHHHhc---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEE
Confidence 999999886 368999999999999999999999999999999999999999999999 8887777778899999999
Q ss_pred hhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
|||++++|+|+||+++++++++.+. ...+..|++++|+.|+++.++|+.+.++++.++++++++++++.|+++..++
T Consensus 251 ~sK~l~~G~rig~vv~~~~i~~~l~---~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 327 (403)
T PRK05093 251 SAKALGGGFPIGAMLTTAEIASHFK---VGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKINQKY 327 (403)
T ss_pred ecccccCCcceEEEEEcHHHHhhcC---CCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999886 3346678999999999999999998778899999999999999999987667
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHH
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~ 469 (474)
++...+++.|.++++++.... .....++++.|+++||++.+.+.+.+|+ ++.+++++|++++++|++
T Consensus 328 ~~~~~~~~~G~~~~~~l~~~~-----------~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~~~~~~~~~~i~~~~~~l~~ 396 (403)
T PRK05093 328 GVFSEIRGMGLLIGAELKPQY-----------KGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADIDEGLARFEK 396 (403)
T ss_pred CCeEeEeeCceEEEEEecCcc-----------hhHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 777789999999999985310 1124678899999999999877667777 688899999999999999
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
++.+
T Consensus 397 ~l~~ 400 (403)
T PRK05093 397 AVAK 400 (403)
T ss_pred HHHH
Confidence 8865
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-59 Score=468.99 Aligned_cols=372 Identities=21% Similarity=0.285 Sum_probs=300.4
Q ss_pred CeE--EEeeccCEEEEc-CCCEEEeccCChhhccCCCCCHHHH--HHHHHHHHhcC----C-CCCCCHHHHHHHHHHHhh
Q 011959 82 PIV--FDSVKGSHMWDI-DGNEYIDYVGSWGPAIIGHADDQVL--AALGETMKKGT----S-FGAPCLLENVLAEMVISA 151 (474)
Q Consensus 82 p~~--~~~~~G~~~~d~-dG~~~iD~~~~~~~~~lG~~~p~v~--~a~~~~~~~~~----~-~~~~~~~~~~la~~l~~~ 151 (474)
|++ +++++|+|+||. |||+||||.+++++.++||+||+|+ +|+.+|+++.. . ....++...+++++|.+.
T Consensus 18 p~~~~~~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 97 (431)
T TIGR03251 18 DLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARV 97 (431)
T ss_pred ceeeEEEeccCCEEEECCCCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHh
Confidence 444 699999999996 9999999999999999999999999 99999998752 1 134577778999999988
Q ss_pred C-C-CCCeEEEeCCHHHHHHHHHHHhHhhcC------------CcEEEEEeCCCCCCchhHHHhcCCCCcc-CCCCCCCC
Q 011959 152 V-P-SIEMVRFVNSGTEACMGVLRLARAFTG------------RERIIKFEGCYHGHADPFLVKAGSGVAT-LGLPDSPG 216 (474)
Q Consensus 152 ~-~-~~~~v~~~~sGseA~~~al~~ar~~~~------------~~~ii~~~~~yhg~~~~~~~~~g~~~~~-~~~~~~~g 216 (474)
. + +.++++|+|||+||++.|+|+||.+++ +.+||.++++|||++.++++.++..... ...|....
T Consensus 98 ~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~ 177 (431)
T TIGR03251 98 LGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDW 177 (431)
T ss_pred cCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCC
Confidence 6 3 578999999999999999999998863 4789999999999999999888753221 11111100
Q ss_pred --C--CCC---CC----CceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011959 217 --V--PKG---AT----YETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (474)
Q Consensus 217 --~--~~~---~~----~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (474)
+ +.. .. .....+.+++++++++.+.++++++++||+||+++++|.+.++++||++|+++|++||++||+
T Consensus 178 ~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~ 257 (431)
T TIGR03251 178 PRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIF 257 (431)
T ss_pred ccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 0 000 00 001111234567778888777789999999999999999999999999999999999999999
Q ss_pred eccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhc--CCCCcccccCCCCChHHHHHHHHHHH
Q 011959 286 DEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTLK 362 (474)
Q Consensus 286 DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~--~~~~~~~~~t~~~~~~~~aaa~aal~ 362 (474)
||||+|| |+|.+|+++++|+.||++++||++ ++++++..+++.+... ......+.+||++||++|++++++|+
T Consensus 258 DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK~~----~~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~ 333 (431)
T TIGR03251 258 DEVQTGVGLTGTAWAYQQLGVQPDIVAFGKKT----QVCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILE 333 (431)
T ss_pred ecchhccCccchHHHHHhcCCCCCEEEecccC----ccceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHH
Confidence 9999999 999999999999999999999997 4555555555433221 01123477899999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEe
Q 011959 363 RLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 441 (474)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 441 (474)
.++++++.+++++++++++++|+++..+++ ++.++++.|+|+++++.. ......+.+.|+++||++
T Consensus 334 ~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~-------------~~~~~~~~~~l~~~Gvl~ 400 (431)
T TIGR03251 334 IIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPS-------------TADRDEVIRQLYREGVLL 400 (431)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCC-------------HHHHHHHHHHHHhCCeEE
Confidence 998888999999999999999999877888 888999999999999842 123457889999999999
Q ss_pred cccCCcceE--EecCCcHHHHHHHHHHHHHH
Q 011959 442 APSQFEAGF--TSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 442 ~~~~~~~~~--~~~~~t~e~i~~~l~~l~~~ 470 (474)
.+.+...++ +++.+|++|||+++++|+++
T Consensus 401 ~~~g~~~lr~~P~l~~t~~eid~~l~~l~~~ 431 (431)
T TIGR03251 401 LGCGERSIRFRPPLTVTREEIDAAIDAIRRV 431 (431)
T ss_pred ecCCCCeEEEECCccCCHHHHHHHHHHHHhC
Confidence 887655555 47999999999999999863
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-60 Score=461.48 Aligned_cols=315 Identities=37% Similarity=0.593 Sum_probs=277.1
Q ss_pred EEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCC-CCCeEE
Q 011959 84 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIEMVR 159 (474)
Q Consensus 84 ~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~~~~v~ 159 (474)
++++++|+|+||.||++||||.+++++.++||+||+|.+++++++.+... ....++...+|+++|.+.+| +.++++
T Consensus 1 ~i~~a~G~~l~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~ 80 (339)
T PF00202_consen 1 FIERAEGAYLWDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVF 80 (339)
T ss_dssp EEEEEEBTEEEETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEE
T ss_pred CeEEeecCEEEECCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceee
Confidence 58999999999999999999999999999999999999999999988643 34578889999999999998 688999
Q ss_pred EeCCHHHHHHHHHHHhH------hhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCCC
Q 011959 160 FVNSGTEACMGVLRLAR------AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 160 ~~~sGseA~~~al~~ar------~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d 232 (474)
|++||+||++.|||+|| ..++|.+|+.+.++|||.+.+++..++........ +. ...+..+|+++
T Consensus 81 f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~--------~~~~~~~p~~~ 152 (339)
T PF00202_consen 81 FANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPL--------YPGVVFVPFPD 152 (339)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSS--------STTEEEEETTC
T ss_pred eccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcccccccccc--------ccccccccCCc
Confidence 99999999999999999 88999999999999999999999987664333211 11 12357788887
Q ss_pred HHH----------HHHHHh-cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccc
Q 011959 233 VSA----------LENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ 300 (474)
Q Consensus 233 ~~~----------le~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~ 300 (474)
... +++.+. .+++++++||+||+++++|.+.++++||++|+++|+|||++||+|||+||| |+|++|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~ 232 (339)
T PF00202_consen 153 PAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFAS 232 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGH
T ss_pred cchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccce
Confidence 666 444333 335689999999999999999999999999999999999999999999999 99999999
Q ss_pred cccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 011959 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGEL 380 (474)
Q Consensus 301 ~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l 380 (474)
+++|+.||++|+||++++|+|+|++++++++++.+.. ..+.+||++||++|++++++|+.++++++.++++++++++
T Consensus 233 ~~~gv~PDiv~~gK~l~gG~p~sav~~~~~i~~~~~~---~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l 309 (339)
T PF00202_consen 233 EHYGVDPDIVTFGKGLGGGLPISAVLGSEEIMEAFQP---GSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERL 309 (339)
T ss_dssp HHHTSSSSEEEEEGGGGTTSSEEEEEEEHHHHTTSCT---TSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred ecccccCcccccccchhhhhhcccccccchhhccccc---cccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998863 3388999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCeeEEeeeceeEEEEEe
Q 011959 381 TQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (474)
Q Consensus 381 ~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (474)
+++|+++..+++.+.++++.|+|++++|.
T Consensus 310 ~~~L~~l~~~~~~i~~vrg~Gl~~~ie~~ 338 (339)
T PF00202_consen 310 REGLRELAARYPLIGEVRGIGLMIGIELV 338 (339)
T ss_dssp HHHHHHHHHHTTTEEEEEEETTEEEEEES
T ss_pred HHHHHHHHHhCCCeEEEeeeCeEEEEEEE
Confidence 99999998888999999999999999985
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=465.62 Aligned_cols=377 Identities=23% Similarity=0.305 Sum_probs=313.4
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--C-CCCCHHHHHHHHHHHhhCC-CCCe
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SIEM 157 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~-~~~~~~~~~la~~l~~~~~-~~~~ 157 (474)
++.+++++|+|+||.|||+||||.+++++.+|||+||+|++++++++++... + +..++...+++++|++..| +.++
T Consensus 28 ~~~~~~a~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~ 107 (427)
T TIGR00508 28 VYPVESADGVELTLDDGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDC 107 (427)
T ss_pred CceEEeeeeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCE
Confidence 4678999999999999999999999999999999999999999999998532 2 3467788999999999987 4689
Q ss_pred EEEeCCHHHHHHHHHHHhHhhc------CCcEEEEEeCCCCCCchhHHHhcCCCC-ccCCC-CCCCCCCCCCCC-ceEEc
Q 011959 158 VRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATY-ETLTA 228 (474)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~-~~~~~-~~~~g~~~~~~~-~~~~~ 228 (474)
++|++||+||++.|+|+||.++ ++.+||.++++|||++.++++.++... ....+ +..+........ ..+..
T Consensus 108 v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 187 (427)
T TIGR00508 108 VFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDE 187 (427)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccc
Confidence 9999999999999999999884 578999999999999999988776421 11000 111111000000 01112
Q ss_pred cC--CCHHHHHHHHhcCCCCeEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccC
Q 011959 229 PF--NDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG 304 (474)
Q Consensus 229 ~~--~d~~~le~~l~~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g 304 (474)
++ +|+++++++++++++++++||+||+ ++++|.+.++++||++|+++|++||++||+||||+|| |+|.+|+.++++
T Consensus 188 ~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~ 267 (427)
T TIGR00508 188 EWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAG 267 (427)
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcC
Confidence 22 3678889888876678999999997 8999999999999999999999999999999999999 999999999999
Q ss_pred CCCceeehhhhcCCCc-ceEEEEecHHHHHhhcCC--CCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011959 305 VTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 381 (474)
Q Consensus 305 ~~pdi~t~sK~l~~G~-~iG~~~~~~~i~~~~~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~ 381 (474)
+.||++|+||+++||+ |++++++++++++.+... ....+.+||++||+++++++++|++++++++.+++++++++|+
T Consensus 268 v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~ 347 (427)
T TIGR00508 268 VVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLK 347 (427)
T ss_pred CCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999995 999999999999988642 1234778999999999999999999988899999999999999
Q ss_pred HHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHH
Q 011959 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDD 459 (474)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~ 459 (474)
++|+++. .++...++++.|+|+++++.++. ....+.+.|+++||++.+.+ ..+++ ++++|++|
T Consensus 348 ~~L~~l~-~~~~i~~vrg~G~~~~i~~~~~~-------------~~~~~~~~l~~~Gv~~~~~~-~~l~~~ppl~~t~~~ 412 (427)
T TIGR00508 348 RELSPLR-KNPVVKDVRVLGAIGVVEMYKPV-------------NVEELQKKFVEQGVWIRPFG-KLIYVMPPYIITTEQ 412 (427)
T ss_pred HHHHHhh-cCCCEEeEeccccEEEEEECCcc-------------CHHHHHHHHHHCCeEEEecC-CEEEEECCCCCCHHH
Confidence 9999874 35556789999999999995321 12568899999999998765 34555 68899999
Q ss_pred HHHHHHHHHHHHhh
Q 011959 460 IQHTITAAEKVLRQ 473 (474)
Q Consensus 460 i~~~l~~l~~~~~~ 473 (474)
||+++++|++++++
T Consensus 413 id~~~~~l~~~l~~ 426 (427)
T TIGR00508 413 LQKLTAALIEALHE 426 (427)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999875
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=481.31 Aligned_cols=412 Identities=19% Similarity=0.237 Sum_probs=320.0
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccC----EEEEcCCC----EEEeccCChhhccCC-CCCHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGS----HMWDIDGN----EYIDYVGSWGPAIIG-HADDQV 120 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~----~~~d~dG~----~~iD~~~~~~~~~lG-~~~p~v 120 (474)
..+++++.+++++++....+ +.+.+. ...+.+|++++|. |++|.+|+ +|||++++||++++| |+||+|
T Consensus 311 ~~~~~~~~~~a~~~iw~Pft-q~~~~~--~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I 387 (817)
T PLN02974 311 LQRLQSMPKEAGEVLWWPFT-QHALVP--RDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPEL 387 (817)
T ss_pred hHHHHHHHHHHhhhccCCcc-cccccC--CCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCHHH
Confidence 34567788888887754332 111111 1137889999998 99999998 999999999999999 589999
Q ss_pred HHHHHHHHHhcCCC---CCCCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHhH-hhc---------------
Q 011959 121 LAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLAR-AFT--------------- 179 (474)
Q Consensus 121 ~~a~~~~~~~~~~~---~~~~~~~~~la~~l~~~~~-~-~~~v~~~~sGseA~~~al~~ar-~~~--------------- 179 (474)
.+|+++|+++..++ ++.++...+|+++|.+..+ + .++|+|++|||||+|.|||+|| .++
T Consensus 388 ~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~ 467 (817)
T PLN02974 388 ARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRG 467 (817)
T ss_pred HHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCccccccccc
Confidence 99999999985432 3578899999999999654 3 6899999999999999999995 352
Q ss_pred ---CCcEEEEEeCCCCCCchhHHHhcCCCCccCCC--CCC-CCCCCCCCCc--------eEEccCC--------------
Q 011959 180 ---GRERIIKFEGCYHGHADPFLVKAGSGVATLGL--PDS-PGVPKGATYE--------TLTAPFN-------------- 231 (474)
Q Consensus 180 ---~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~--~~~-~g~~~~~~~~--------~~~~~~~-------------- 231 (474)
+|.+||.++++|||.+.+++..++.......+ |.. +......... ...+|++
T Consensus 468 ~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 547 (817)
T PLN02974 468 GDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWES 547 (817)
T ss_pred ccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCcccccccccccccccc
Confidence 37789999999999999999998743221110 100 0000000000 0001110
Q ss_pred -----------------CHHHHHHHHhc-----CCCCeEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011959 232 -----------------DVSALENLFEN-----NKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (474)
Q Consensus 232 -----------------d~~~le~~l~~-----~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (474)
..+.+++.|++ .++++++||+||+ ++.+|++.|+++|+++|+++|++||++||+|||
T Consensus 548 ~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV 627 (817)
T PLN02974 548 RDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEV 627 (817)
T ss_pred ccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeec
Confidence 02557777753 3568999999995 899999999999999999999999999999999
Q ss_pred ccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC---CCcccccCCCCChHHHHHHHHHHHH
Q 011959 289 MTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKR 363 (474)
Q Consensus 289 ~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~---~~~~~~~t~~~~~~~~aaa~aal~~ 363 (474)
+||| |+|.+|+++++|+.|||+|++|+++|| +|+|++++++++++.+... ..+.|++||++||++|++++++|++
T Consensus 628 ~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~ 707 (817)
T PLN02974 628 FTGLWRLGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQW 707 (817)
T ss_pred ccCCCcccchhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHH
Confidence 9999 999999999999999999999999999 5999999999999998521 2456899999999999999999999
Q ss_pred hcCCCHHHHHHHH----HHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCc-CcccccccchHHHHHHHHHHH-HC
Q 011959 364 LKEPGTYEYLNKI----TGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY-NFEDAKKSETTKFARFYRGML-EE 437 (474)
Q Consensus 364 ~~~~~~~~~~~~~----~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~ 437 (474)
++++++.+++.++ ++++.+.|.+.+.+++.+.++++.|+|++++|.++... .+ .......+.+.++ ++
T Consensus 708 ~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~------~~~~a~~v~~~~~~~~ 781 (817)
T PLN02974 708 YKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGY------SSLYARSVVRRLRRED 781 (817)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCccccc------chHHHHHHHHHHHHhC
Confidence 9887555555444 45556666444566889999999999999999764211 11 2234567888889 99
Q ss_pred CeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHH
Q 011959 438 GVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 438 Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~ 471 (474)
||++++.+ +.+++ ++.+++++++++++++.+.+
T Consensus 782 Gl~~r~~G-nvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 782 GIYARPLG-NVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred CEEEEecC-CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999875 44443 78999999999999999876
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-57 Score=457.74 Aligned_cols=400 Identities=28% Similarity=0.431 Sum_probs=328.8
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC
Q 011959 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (474)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 132 (474)
.+++.++++++.++++..+ +|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~---------~p~~~~~~~G~~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~ 74 (425)
T PRK08088 4 NKSLMQRRSAAVPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS 74 (425)
T ss_pred HHHHHHHHHHhhccccCCC---------CCceEEeeeeCEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCC
Confidence 4567777777777765432 3899999999999999999999999999999999999999999999999853
Q ss_pred CCC---CCCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCC-
Q 011959 133 SFG---APCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV- 206 (474)
Q Consensus 133 ~~~---~~~~~~~~la~~l~~~~~-~-~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~- 206 (474)
... ..++...+|+++|++..| + .++++|++||+||++.|+++||.++++.+||.++++|||.+.+++..++...
T Consensus 75 ~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~ 154 (425)
T PRK08088 75 HTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNP 154 (425)
T ss_pred CccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCc
Confidence 221 236677899999999886 3 3699999999999999999999999999999999999999999998776411
Q ss_pred ccCCC-CCCCCCCCCCCCceEEccCCC------HHHHHHHHh--cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Q 011959 207 ATLGL-PDSPGVPKGATYETLTAPFND------VSALENLFE--NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (474)
Q Consensus 207 ~~~~~-~~~~g~~~~~~~~~~~~~~~d------~~~le~~l~--~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (474)
...++ +...++.. ..+..++++ ++.|+++++ .+++++++||+||+++++|.+.++++|+++|+++|+
T Consensus 155 ~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~ 230 (425)
T PRK08088 155 YSAGMGLMPGHVYR----ALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCD 230 (425)
T ss_pred cccCCCCCCCCcEE----cCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHH
Confidence 11111 00111100 001111221 567888886 345689999999999999999999999999999999
Q ss_pred HhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHH
Q 011959 278 ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 356 (474)
Q Consensus 278 ~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aa 356 (474)
+||++||+||+|+|| ++|.+++++++++.||+.+|||++++|+|+||+++++++++.+.. ..+.+|+++||+.|++
T Consensus 231 ~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G~rig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~~a 307 (425)
T PRK08088 231 EHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAP---GGLGGTYAGNPIACAA 307 (425)
T ss_pred HcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccCCCcceeeEecHHHHhhcCC---CCCCCCCCcCHHHHHH
Confidence 999999999999999 888777777889999999999999999999999999999998873 3467799999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH
Q 011959 357 GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 436 (474)
Q Consensus 357 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 436 (474)
+.++|+.++.+++++++++.++++++.|.++..+++.+..+++.|+|+|+++.++. +...|+......+.+.|++
T Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G~~~~l~l~~~~-----~~~~p~~~~~~~l~~~~~~ 382 (425)
T PRK08088 308 ALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDG-----DHSKPNAKLTAQIVARARD 382 (425)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccceEEEEEEecCC-----CCCCCCHHHHHHHHHHHHh
Confidence 99999998878999999999999999999988888888889999999999996432 1122445566789999999
Q ss_pred CCeEecccCC--cceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 437 EGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 437 ~Gv~v~~~~~--~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+||++.+.+. +.+++ ++.+|+++|++++++|++++.+
T Consensus 383 ~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 383 KGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred CCCEEecCCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHh
Confidence 9998876542 45565 4578999999999999999875
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-57 Score=452.39 Aligned_cols=364 Identities=28% Similarity=0.403 Sum_probs=313.2
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCC--CC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPS--IE 156 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~--~~ 156 (474)
.|+++++++|+|+||.|||+||||.+++++++|||+||+|.+++.+++++... ..+++....+|+++|++.++. .+
T Consensus 25 ~~~~~~~~~G~~~~d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~ 104 (398)
T PRK03244 25 PPLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATEPQIALAERLVELLGAPEGG 104 (398)
T ss_pred CCceEEEeeecEEEECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccCCHHHHHHHHHHHHhCCCCCCC
Confidence 37899999999999999999999999999999999999999999999987422 225677778999999999862 47
Q ss_pred eEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHH
Q 011959 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 236 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l 236 (474)
+++|++||+||++.|+++++. +++++||.++++|||++..++...+.......+ .....++..+|++|++++
T Consensus 105 ~v~~~~sgsea~~~al~~~~~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~d~~~l 176 (398)
T PRK03244 105 RVFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPF-------EPLPGGVEHVPYGDVDAL 176 (398)
T ss_pred EEEEeCchHHHHHHHHHHHHH-HCCCeEEEECCCcCCccHHHHhccCCcccccCC-------CCCCCCceEeCCCCHHHH
Confidence 999999999999999999877 678899999999999999988776643221111 011224677888999999
Q ss_pred HHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhh
Q 011959 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKI 315 (474)
Q Consensus 237 e~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~ 315 (474)
++.+. +++++|++||+++++|.+.|+++|+++|+++|++||++||+||+|+|| |+|.+++++++++.||++||||+
T Consensus 177 ~~~~~---~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~sK~ 253 (398)
T PRK03244 177 AAAVD---DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLAKG 253 (398)
T ss_pred HHhhc---CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEEchh
Confidence 99885 378999999999999999999999999999999999999999999999 98887777888999999999999
Q ss_pred cCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee
Q 011959 316 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (474)
Q Consensus 316 l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (474)
+++|+|+|++++++++++.+. ...+.+||++||++|+++.++|+.++++++.++++++++++++.|+++ .++.+.
T Consensus 254 l~~G~~ig~~~~~~~~~~~~~---~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~ 328 (398)
T PRK03244 254 LGGGLPIGACLAFGPAADLLT---PGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEAL--GHPLVD 328 (398)
T ss_pred hhCCcccEEEEEcHHHHhhcc---CCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc--CCCcee
Confidence 999999999999999999886 344677999999999999999998888889999999999999999876 356667
Q ss_pred EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++++.|+++++++..+ ....+.+.|+++||++.+.+.+.+|+ ++.+|++||++++++|++++++
T Consensus 329 ~v~g~g~~~~i~~~~~--------------~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~ 394 (398)
T PRK03244 329 HVRGRGLLLGIVLTAP--------------VAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVAALPAILDA 394 (398)
T ss_pred eEeeccEEEEEEEecc--------------HHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 8899999999998421 23578899999999998876566666 4779999999999999999875
Q ss_pred C
Q 011959 474 I 474 (474)
Q Consensus 474 ~ 474 (474)
+
T Consensus 395 ~ 395 (398)
T PRK03244 395 A 395 (398)
T ss_pred c
Confidence 3
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=448.24 Aligned_cols=362 Identities=29% Similarity=0.410 Sum_probs=312.7
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
+|+++++++|+|+||.||++||||.+|+++.+|||+||+|++|+.+++++... ....++++.+|++++.+..+ .+++
T Consensus 11 ~~~~~~~~~G~~~~d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~ 89 (377)
T PRK02936 11 FPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSA-GDLV 89 (377)
T ss_pred CCceEEEeecCEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCC-CCEE
Confidence 47899999999999999999999999999999999999999999999987422 22457888999999998774 5799
Q ss_pred EEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHH
Q 011959 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~ 238 (474)
+|++||++|++.|++++|.++++++||.++++|||++...+..++.......+ . ....++..+|+||++++++
T Consensus 90 ~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~d~~~l~~ 162 (377)
T PRK02936 90 FFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGF------G-PLLPGFTHVPFNDIKALKE 162 (377)
T ss_pred EEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccC------C-CCCCCceEeCCCCHHHHHH
Confidence 99999999999999999999999999999999999999888776542221111 0 0112356789999999999
Q ss_pred HHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcC
Q 011959 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG 317 (474)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~ 317 (474)
.+. +++++|++||+++++|.++++++|+++|+++|++||++||+||+|+|| ++|.++..+++++.||++||||+++
T Consensus 163 ~~~---~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~ 239 (377)
T PRK02936 163 VMN---EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKGLG 239 (377)
T ss_pred hcc---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEccccc
Confidence 886 368999999999999999999999999999999999999999999999 8887777778899999999999999
Q ss_pred CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 318 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 318 ~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
+|+|+||+++++++++.+. ...+.+|+++||++++++.++|+.+.+++++++++++++++++.|++...+++.+..+
T Consensus 240 ~G~~ig~v~~~~~~~~~~~---~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 316 (377)
T PRK02936 240 NGIPVGAMIGKKELGTAFG---PGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNI 316 (377)
T ss_pred CCCccEEEEEcHHHHhhcc---CCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEeE
Confidence 9999999999999999886 3346678999999999999999998667899999999999999999876667777778
Q ss_pred eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHHHHH
Q 011959 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~~ 471 (474)
++.|.++++++.++ ...+.+.|.++||++.+.+.+.+|++ +.++++++++++++|++++
T Consensus 317 ~~~g~~~~i~~~~~---------------~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 317 RGKGLMIGIECTEE---------------VAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred eecceEEEEEecch---------------HHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 88999999988531 35688899999999998876777875 7899999999999998764
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=443.10 Aligned_cols=386 Identities=23% Similarity=0.350 Sum_probs=321.1
Q ss_pred HHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC
Q 011959 54 EEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS 133 (474)
Q Consensus 54 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~ 133 (474)
++++++.+++...+.. ..|+++.+++|+|+||.||++||||.+++++.++||+||+|++|+.+++++...
T Consensus 2 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~~~~~~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~ 71 (401)
T TIGR01885 2 EEAIERENKYGAHNYH----------PLPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTL 71 (401)
T ss_pred hhHHHHHHHhhhcccC----------CCCceEEeeecCEEEeCCCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccc
Confidence 4566666665443321 237889999999999999999999999999999999999999999999987432
Q ss_pred CC--CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh--------cCCcEEEEEeCCCCCCchhHHHhcC
Q 011959 134 FG--APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAG 203 (474)
Q Consensus 134 ~~--~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~~~~g 203 (474)
.. ..++...+|+++|++.+ +.++++|++||++||+.|+++||.+ +++..|+.++++|||++...+..++
T Consensus 72 ~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~ 150 (401)
T TIGR01885 72 SSRAFYNDVFGEFAEYVTKLF-GYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMST 150 (401)
T ss_pred cccccCCHHHHHHHHHHHhhc-CCCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcC
Confidence 22 35778899999999988 4689999999999999999999876 3578899999999999999888776
Q ss_pred CCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEE
Q 011959 204 SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL 283 (474)
Q Consensus 204 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~ll 283 (474)
.......+ .. ....+..++|+|+++|+++++++++++++||+||+++++|.+.|+++||++|+++|++||+++
T Consensus 151 ~~~~~~~~---~~----~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~ll 223 (401)
T TIGR01885 151 DPDSRTNF---GP----YVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLL 223 (401)
T ss_pred Cccccccc---CC----CCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 42221111 00 012357789999999999997666789999999999999999999999999999999999999
Q ss_pred EEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHH
Q 011959 284 IFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 361 (474)
Q Consensus 284 I~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal 361 (474)
|+||||+|| ++|.+++.+++++.||++++||++++| +|+|++++++++++.+.. ..+..|+++||++++++.++|
T Consensus 224 i~DEv~~g~g~~G~~~~~~~~~~~~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~---~~~~~t~~~~p~~~~aa~a~L 300 (401)
T TIGR01885 224 IADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKP---GEHGSTYGGNPLACAVAVAAL 300 (401)
T ss_pred EEechhhCCCccchhhHHhhcCCCCCEEEeeccccCCCCCcEEEEEcHHHHhhccC---CCCCCCCCCCHHHHHHHHHHH
Confidence 999999999 988877777889999999999999976 899999999999998863 335578999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEe
Q 011959 362 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 441 (474)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 441 (474)
+.++++++.++++++++++++.|+++. .+++.++++.|.|+.+++..+.. .....++.+.|.++||++
T Consensus 301 ~~i~~~~l~~~~~~~~~~~~~~L~~l~--~~~~~~~~g~g~~~~i~~~~~~~----------~~~~~~l~~~l~~~Gv~v 368 (401)
T TIGR01885 301 EVLEEEKLAENAEKLGEIFRDQLKKLP--KPIITEVRGRGLLNAIVIDESKT----------GRTAWDLCLKLKEKGLLA 368 (401)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHhcc--CCceeEEeecCeeEEEEeccCcc----------hhHHHHHHHHHHhCCEEE
Confidence 999877889999999999999999873 45667889999999998853210 123467889999999999
Q ss_pred cccCCcceEE--ecCCcHHHHHHHHHHHHHHHh
Q 011959 442 APSQFEAGFT--SLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 442 ~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~ 472 (474)
.+.+...+|+ ++.+|+++|++++++|+++++
T Consensus 369 ~~~~~~~lRi~p~l~~t~~~i~~~l~~l~~~l~ 401 (401)
T TIGR01885 369 KPTHGNIIRLAPPLVITEEQLDEGLEIIKKVID 401 (401)
T ss_pred EecCCCEEEEeCCccCCHHHHHHHHHHHHHHhC
Confidence 8877666777 478999999999999998763
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=444.54 Aligned_cols=394 Identities=35% Similarity=0.534 Sum_probs=332.1
Q ss_pred HHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCC
Q 011959 57 FNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA 136 (474)
Q Consensus 57 ~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~ 136 (474)
+++++++++.|++ . ...|+++.+++|+++||.||++||||.+|++++++||+||+|++++.+++.++..+..
T Consensus 2 ~~~~~~~~~~~~~-~-------~~~~~~~~~~~g~~~~d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~ 73 (413)
T cd00610 2 FERDRKVLWHGYT-V-------RPYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSL 73 (413)
T ss_pred cchhhhhcccccc-C-------CCCCceEEeeecCEEEeCCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccC
Confidence 3566778888764 1 1258999999999999999999999999999999999999999999999987654433
Q ss_pred ---CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCC
Q 011959 137 ---PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212 (474)
Q Consensus 137 ---~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~ 212 (474)
.++...+|++.+++.++ +.++++|++||++|++.|++++|.++++++|++++++|||++...+..++....
T Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~----- 148 (413)
T cd00610 74 GFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKY----- 148 (413)
T ss_pred cccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccc-----
Confidence 47889999999999997 689999999999999999999998999999999999999999988887664211
Q ss_pred CCCCCCCCCCCceEEccCC-----------CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCC
Q 011959 213 DSPGVPKGATYETLTAPFN-----------DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 281 (474)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~-----------d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~ 281 (474)
.+.......++..+|++ |++.|++.++++++++++|++||+++++|.+.++++|+++|+++|++||+
T Consensus 149 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~ 226 (413)
T cd00610 149 --RGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGI 226 (413)
T ss_pred --cccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 11111222346778887 89999999987666899999999999999999999999999999999999
Q ss_pred EEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHH
Q 011959 282 LLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360 (474)
Q Consensus 282 llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aa 360 (474)
+||+||+|+|| +.|..+..+++++.||++|+||++++|+|+||+++++++++.+. .....+.+|+++|+++++++.++
T Consensus 227 ~li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~sK~l~~g~~~g~~~~~~~~~~~~~-~~~~~~~~t~~~~~~~~~a~~a~ 305 (413)
T cd00610 227 LLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGKGLGGGLPLGAVLGREEIMDAFP-AGPGLHGGTFGGNPLACAAALAV 305 (413)
T ss_pred EEEEeccccCCCcCcchhhHhhcCCCCCeEEEcccccCccccEEEEEcHHHHHhhc-cCCCCCCCCCCcCHHHHHHHHHH
Confidence 99999999999 88877778888999999999999999999999999999999871 12455667999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeE
Q 011959 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (474)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (474)
|+.++++++.+++++++++++++|+++...++.+..+++.|.++++.+.+....+ .++......+.+.|+++||+
T Consensus 306 l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~gv~ 380 (413)
T cd00610 306 LEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATK-----PPDKELAAKIIKAALERGLL 380 (413)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcC-----CcchHHHHHHHHHHHHCCeE
Confidence 9998878899999999999999999887656667778889999999986532111 12334557789999999999
Q ss_pred ecccCCcceEE--ecCCcHHHHHHHHHHHHHHH
Q 011959 441 FAPSQFEAGFT--SLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 441 v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~ 471 (474)
+.+.+...+|+ ++.+|+++|++++++|++++
T Consensus 381 v~~~~~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 381 LRPSGGNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred EeecCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 99875455665 67889999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-54 Score=436.52 Aligned_cols=384 Identities=24% Similarity=0.330 Sum_probs=316.5
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHh
Q 011959 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (474)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 130 (474)
..+++++++-..+...+.. ..|+++.+++|+|+||.||++||||.+++++.++||+||+|.+|+.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~ 72 (401)
T PRK00854 3 NTSEDLIATEQRLGAHNYK----------PLDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGR 72 (401)
T ss_pred CCCHHHHHHHhhhhhcccC----------CCCceEEeeeeCEEEECCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhh
Confidence 3456677654443333221 237889999999999999999999999999999999999999999999998
Q ss_pred cCCC--CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh--------cCCcEEEEEeCCCCCCchhHHH
Q 011959 131 GTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLV 200 (474)
Q Consensus 131 ~~~~--~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~~ 200 (474)
.... ...++...+|+++|+++++ .++++|++||++|++.|++++|.+ +++++||+++.+|||++..++.
T Consensus 73 ~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~ 151 (401)
T PRK00854 73 LTLTSRAFRNDQLAPLYEELAALTG-SHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVG 151 (401)
T ss_pred ccccccccCCHHHHHHHHHHHhhCC-CCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHh
Confidence 5322 2456788899999999885 579999999999999999999876 3568999999999999988776
Q ss_pred hcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC
Q 011959 201 KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280 (474)
Q Consensus 201 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g 280 (474)
.++.......+ . ....++..+||+|++++++.+. +++++|++||++|++|.+.|+++||++|+++|++||
T Consensus 152 ~~~~~~~~~~~--~-----~~~~~~~~~~~~d~~~le~~i~---~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~g 221 (401)
T PRK00854 152 FSTDPDARGGF--G-----PFTPGFRVVPFGDAEALEAAIT---PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANN 221 (401)
T ss_pred ccCCccccccC--C-----CCCCCeEEeCCCCHHHHHHHhC---CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 65442211111 0 0112467789999999999886 368999999999999999999999999999999999
Q ss_pred CEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHH
Q 011959 281 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 358 (474)
Q Consensus 281 ~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~ 358 (474)
++||+||+|+|| ++|.++..+++|+.||++++||++++| +|+|++++++++++.+. ...+..|+++||+.+++++
T Consensus 222 i~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~---~~~~~~t~~~~~~~~aa~~ 298 (401)
T PRK00854 222 VTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLK---PGQHGSTFGGNPLACAVAR 298 (401)
T ss_pred CEEEEechhhCCCCCchHhHHhhcCCCCCEEEecccccCCccCeEEEEEcHHHHhccc---CCCCCCCCCcCHHHHHHHH
Confidence 999999999999 888766667889999999999999987 69999999999999876 3446678999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCC
Q 011959 359 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 438 (474)
Q Consensus 359 aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 438 (474)
++|+.++++++.++++++++++++.|+++. .....++++.|.|+.+.+..+. .....+++.|+++|
T Consensus 299 a~L~~l~~~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~g~g~~~~i~~~~~~------------~~~~~~~~~L~~~G 364 (401)
T PRK00854 299 AALKVLTEEGMIENAAEMGAYFLEGLRSIR--SNIVREVRGRGLMLAVELEPEA------------GGARQYCEALKERG 364 (401)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHhhc--cCceEEEeccceEEEEEEecCc------------hhHHHHHHHHHHCC
Confidence 999998777899999999999999998863 2334567889999998875321 12367899999999
Q ss_pred eEecccCCcceEEe--cCCcHHHHHHHHHHHHHHHh
Q 011959 439 VYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 439 v~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~~~ 472 (474)
|++.+.+...+|++ +.+|+++|++++++|++++.
T Consensus 365 V~v~~~~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 365 LLAKDTHDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred eEEecCCCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 99987655677775 68999999999999999874
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-54 Score=435.30 Aligned_cols=365 Identities=28% Similarity=0.435 Sum_probs=314.8
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++++++|+|+||.|||+||||.++++++++||+||+|.+++.+++++... ..++++.+.+|++++++.. +.+++
T Consensus 21 ~~~~~~~~~G~~~~d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~~v 99 (396)
T PRK02627 21 LPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYIEPQEELAEKLVELS-GMDKV 99 (396)
T ss_pred CCceEEeeeeCEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhc-CCCEE
Confidence 48899999999999999999999999999999999999999999999987432 2357889999999999987 67899
Q ss_pred EEeCCHHHHHHHHHHHhHhhcCC-----cEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCH
Q 011959 159 RFVNSGTEACMGVLRLARAFTGR-----ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~-----~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~ 233 (474)
+|++||+||++.|+++++.++++ ++|+.++++|||++...+..++......... .....+..++++|+
T Consensus 100 ~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d~ 172 (396)
T PRK02627 100 FFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFE-------PLVEGFIYVPFNDI 172 (396)
T ss_pred EECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCC-------CCCCCceEeCCCCH
Confidence 99999999999999999988876 8899999999999988888776532211110 01123567788999
Q ss_pred HHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeeh
Q 011959 234 SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTL 312 (474)
Q Consensus 234 ~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~ 312 (474)
+++++.+. +++++|++||+++++|...++++++++|+++|++||++||+||+|+|| ++|.+++.+++++.||++||
T Consensus 173 ~~l~~~i~---~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~ 249 (396)
T PRK02627 173 EALKAAIT---DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTL 249 (396)
T ss_pred HHHHHhcC---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEEE
Confidence 99999885 478999999999999988888999999999999999999999999999 88877777788999999999
Q ss_pred hhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 313 GKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 313 sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
||++++|+|+||+++++++++.+. ...+..|+++|+++++++.++|+.++++++.++++++++++++.|.++..+++
T Consensus 250 sK~~~~G~rig~~~~~~~~~~~~~---~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 326 (396)
T PRK02627 250 AKGLGGGVPIGAVLAKEKVADVFT---PGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYP 326 (396)
T ss_pred cchhhCCcccEEEEEcHHHHhccC---CCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999998886 33466799999999999999999888788999999999999999999877777
Q ss_pred CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHH
Q 011959 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~ 470 (474)
....+++.|.++++++... ..++++.|+++||++.+.+.+.+|+ ++.++++++++++++|+++
T Consensus 327 ~~~~~~~~g~~~~i~~~~~---------------~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~~ 391 (396)
T PRK02627 327 GIKEVRGLGLMIGIELDRP---------------AAEIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEV 391 (396)
T ss_pred CeeeeccCcEEEEEEecCc---------------HHHHHHHHHHCCeEEeecCCCEEEEECCcccCHHHHHHHHHHHHHH
Confidence 6677888999999988211 2578899999999999877666777 4689999999999999999
Q ss_pred HhhC
Q 011959 471 LRQI 474 (474)
Q Consensus 471 ~~~~ 474 (474)
++++
T Consensus 392 l~~~ 395 (396)
T PRK02627 392 LKEL 395 (396)
T ss_pred HHhh
Confidence 8753
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=428.54 Aligned_cols=369 Identities=26% Similarity=0.378 Sum_probs=309.5
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--APCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++.+++|+|+||.|||+||||.+++++.++||+||+|++++.+++++..... ..++...++++.+.+.. +.+++
T Consensus 13 ~~~~~~~~~G~~~~d~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 91 (400)
T PTZ00125 13 LPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLF-GYDKV 91 (400)
T ss_pred CCccEEeeecCEEEeCCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCC-CCCEE
Confidence 3788999999999999999999999999999999999999999999998743221 23566677777777665 67899
Q ss_pred EEeCCHHHHHHHHHHHhHhh--------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC
Q 011959 159 RFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 230 (474)
+|++||++|++.|++++|.+ +++++||.++++|||.+...+..++.......+ .+. ...+..+++
T Consensus 92 ~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~ 164 (400)
T PTZ00125 92 LPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNF--GPF-----VPGFELVDY 164 (400)
T ss_pred EEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccC--CCC-----CCCceEeCC
Confidence 99999999999999998754 246889999999999999988877542211101 011 113566788
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCce
Q 011959 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 309 (474)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi 309 (474)
+|+++|++.++ .+++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+|| ++|.++..+++++.||+
T Consensus 165 ~d~~~le~~l~--~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~ 242 (400)
T PTZ00125 165 NDVEALEKLLQ--DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDI 242 (400)
T ss_pred CCHHHHHHHhC--CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCE
Confidence 99999999996 2479999999999999999999999999999999999999999999999 88877777778999999
Q ss_pred eehhhhcCCCc-ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Q 011959 310 TTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388 (474)
Q Consensus 310 ~t~sK~l~~G~-~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~ 388 (474)
+++||++++|+ |+||+++++++++.+.. ..+..|++++|+.++++.++|+.++++++.+++++++++++++|+++.
T Consensus 243 ~~~sK~l~~g~~~ig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~l~ 319 (400)
T PTZ00125 243 VLLGKALSGGLYPISAVLANDDVMLVIKP---GEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELL 319 (400)
T ss_pred EEEcccccCCCcCcEEEEEcHHHHhhccC---CCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999875 99999999999998863 345678999999999999999998877899999999999999999886
Q ss_pred hhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHH
Q 011959 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITA 466 (474)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~ 466 (474)
..++.+..+++.|.++++++..++ ......+.+.|+++||++.|.+.+.+|++ +.++++++++++++
T Consensus 320 ~~~~~~~~~~~~g~~~~v~~~~~~-----------~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~l~~ 388 (400)
T PTZ00125 320 KKSPWVKEIRGKGLLNAIVFDHSD-----------GVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQALEI 388 (400)
T ss_pred hcCCCeEEEecccEEEEEEEccCc-----------chHHHHHHHHHHHCCeEEeecCCCEEEEECCccCCHHHHHHHHHH
Confidence 666777778899999999885321 12346788999999999998876778885 77999999999999
Q ss_pred HHHHHhh
Q 011959 467 AEKVLRQ 473 (474)
Q Consensus 467 l~~~~~~ 473 (474)
|++++++
T Consensus 389 l~~~l~~ 395 (400)
T PTZ00125 389 IKKVLKS 395 (400)
T ss_pred HHHHHHH
Confidence 9998875
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-55 Score=391.44 Aligned_cols=401 Identities=21% Similarity=0.334 Sum_probs=328.7
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC
Q 011959 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (474)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 132 (474)
.++.+++.++++.... ..|.+. +|+.+.|++|.|++|.+|++|||++++. ...||+||+|++|...|+...+
T Consensus 7 K~etlklRk~hIG~~C----q~Fy~s--DP~kivRaq~QYmfDE~g~~yLDCInNV--aHvghchp~VV~A~~kQmat~~ 78 (452)
T KOG1403|consen 7 KTETLKLRKQHIGQAC----QLFYRS--DPLKIVRAQGQYMFDEEGTRYLDCINNV--AHVGHCHPEVVRAGAKQMATIS 78 (452)
T ss_pred hHHHHhHHHhccCcce----eEEecC--CchhhehhccceeeccCcccHHHHhhhh--hhcccCCHHHHHHHHHHHhHhc
Confidence 3567777788775433 233322 4999999999999999999999999986 7889999999999999998743
Q ss_pred -CCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcC------CC
Q 011959 133 -SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG------SG 205 (474)
Q Consensus 133 -~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g------~~ 205 (474)
+..+.+....+.|+.|...+|+.+.++|+|||||||+.|||+||.++++.++|..+..|||+....+..+. .+
T Consensus 79 tN~RFlhd~lv~cA~~l~stlPeLsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~ 158 (452)
T KOG1403|consen 79 TNNRFLHDELVQCARTLTSTLPELSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGG 158 (452)
T ss_pred ccchhhHHHHHHHHHHHhhcCCCceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCC
Confidence 33345666688999999999999999999999999999999999999999999999999999877765542 22
Q ss_pred CccCCCCCCCCCCCCCCCceEEccCC-------C-----HHHHHHHHhc---CCCCeEEEEEccccCCCCcccCCHHHHH
Q 011959 206 VATLGLPDSPGVPKGATYETLTAPFN-------D-----VSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (474)
Q Consensus 206 ~~~~~~~~~~g~~~~~~~~~~~~~~~-------d-----~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (474)
+....+ +--...+++++-.|. | .+.++++++. .+..++++|.|+.++-||.+.||.+|++
T Consensus 159 v~kpd~-----VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq 233 (452)
T KOG1403|consen 159 VAKPDY-----VHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQ 233 (452)
T ss_pred cCCCce-----eEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHH
Confidence 211111 000001112222221 1 3455666643 2346899999999999999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCc-ccCC-CccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCC
Q 011959 271 AIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348 (474)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~ 348 (474)
.+.+..+.+|-+.|.||||+|| |.|. .|+++.+++.|||+|++|.+|+|.|+++++.++++.+.+...+ +-.+.||+
T Consensus 234 ~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmGNGhPVa~VattkeIA~Af~atg-v~YFNTyG 312 (452)
T KOG1403|consen 234 AVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNGHPVAAVATTKEIAQAFHATG-VEYFNTYG 312 (452)
T ss_pred HHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCCCCCeeeEEeccHHHHHHhcccc-ceehhccC
Confidence 9999999999999999999999 9885 6788999999999999999999999999999999999997433 34567999
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHH
Q 011959 349 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 428 (474)
Q Consensus 349 ~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 428 (474)
+||++|+++++.++.++++++.++.++.+++|...|.++..++.+++++||.|+|+++++.++.. .+.|+...+.
T Consensus 313 GnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~-----tRtP~tk~A~ 387 (452)
T KOG1403|consen 313 GNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRK-----TRTPDTKEAH 387 (452)
T ss_pred CCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeecccc-----cCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987632 3457777778
Q ss_pred HHHHHHHHC-CeEecccCCcceE----EecCCcHHHHHHHHHHHHHHHh
Q 011959 429 RFYRGMLEE-GVYFAPSQFEAGF----TSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 429 ~~~~~l~~~-Gv~v~~~~~~~~~----~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
.+..+|.+. ||++...|..... ++++.+++++++++..|++++.
T Consensus 388 ~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld~iLT 436 (452)
T KOG1403|consen 388 WVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDEILT 436 (452)
T ss_pred HHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHHHHHHHHHHH
Confidence 888888865 7999887765443 3789999999999999999874
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-53 Score=423.68 Aligned_cols=360 Identities=27% Similarity=0.352 Sum_probs=304.7
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++.+++|+|+||.||++||||.+++++.++|| ||+|++|+.+++++...+ ....+.+.++++.+... ....+
T Consensus 11 ~~~~~~~~~G~~l~d~dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~--~~~~~ 87 (375)
T PRK04260 11 AAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSPNLYLNSLQEEVAQKLIGD--KDYLA 87 (375)
T ss_pred CCceEEEeeeCEEEeCCCCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHhcC--cCCEE
Confidence 37899999999999999999999999999999999 999999999999874222 23567778888877542 12367
Q ss_pred EEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHH
Q 011959 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~ 238 (474)
+|++||+||++.|++++|.++++++||.++++|||++...+..++.......+ ...+ ..+...++||++++++
T Consensus 88 ~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~dl~~l~~ 160 (375)
T PRK04260 88 FFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGF--GDGV-----PHFSYAIFNDLNSVKA 160 (375)
T ss_pred EEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCC--CCCC-----CCeEEeCCCCHHHHHH
Confidence 99999999999999999999999999999999999998888777653322111 1111 1133346789999999
Q ss_pred HHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcC
Q 011959 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG 317 (474)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~ 317 (474)
.+. +++++|++||+++++|.+.++++||++|+++|++||+++|+||+|+|| ++|.++..+++++.||++||||+++
T Consensus 161 ~l~---~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~ 237 (375)
T PRK04260 161 LVN---KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLA 237 (375)
T ss_pred hcC---CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEEEeccccc
Confidence 885 368999999999999999999999999999999999999999999999 8877767778899999999999999
Q ss_pred CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 318 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 318 ~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
+|+|+||+++++++++.+. ...+.+|+++||++++++.++|+.++.+++.++++++++++++.|.+++.+++.+..+
T Consensus 238 ~G~~ig~~~~~~~~~~~~~---~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 314 (375)
T PRK04260 238 NGVPVGAMLAKSSLGGAFG---YGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTV 314 (375)
T ss_pred CCcceEEEEEcHHHHhhcC---CCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEE
Confidence 9999999999999998886 3346779999999999999999998878899999999999999999988777767788
Q ss_pred eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHH
Q 011959 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~ 471 (474)
++.|+++++++... ...+.+.|.++||++.+.+...+|+ ++.+|++++++++++|++++
T Consensus 315 ~~~g~~~~~~~~~~---------------~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~~i~~~l~~l~~~~ 375 (375)
T PRK04260 315 RGLGYMIGIETTAD---------------LSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSEVF 375 (375)
T ss_pred eccceEEEEEecCc---------------HHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence 89999999998321 2578899999999998876566666 47889999999999998763
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-49 Score=393.05 Aligned_cols=361 Identities=30% Similarity=0.441 Sum_probs=301.4
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++++++|+++||.||++||||.++++++++||+||.|.+++.+++++... ..++.+...+|++++++++ +.+++
T Consensus 9 ~~~~~~~~~g~~~~~~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~~ 87 (379)
T TIGR00707 9 LPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHS-GADRV 87 (379)
T ss_pred CCccEEEeecCEEEeCCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhC-CCCEE
Confidence 58999999999999999999999999999999999999999999999987421 2346788999999999999 56799
Q ss_pred EEeCCHHHHHHHHHHHhHhhcC-----CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCH
Q 011959 159 RFVNSGTEACMGVLRLARAFTG-----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~-----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~ 233 (474)
++++||++|++.++++++.+++ +++|++++++|||+...+...++....... .. ....+...+++||+
T Consensus 88 ~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~d~ 160 (379)
T TIGR00707 88 FFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKG-----FE--PLVPGFSYAPYNDI 160 (379)
T ss_pred EEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhcc-----CC--CCCCCceeeCCCCH
Confidence 9999999999999999887765 689999999999999888777654322100 00 11123456688899
Q ss_pred HHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeeh
Q 011959 234 SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTL 312 (474)
Q Consensus 234 ~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~ 312 (474)
+++++.+.. ++++|+++|+++++|...++.+++++|.++|++||+++|+||+|+|| +.|.++..+.+++.||++||
T Consensus 161 ~~l~~~~~~---~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t~ 237 (379)
T TIGR00707 161 ESLKKAIDD---ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITL 237 (379)
T ss_pred HHHHHHhhh---CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEEE
Confidence 999998863 57899999998888887778888999999999999999999999999 77665555667889999999
Q ss_pred hhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 313 GKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 313 sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
||++++|+|+||+++++++++.+.. ..+..+++.|+++++++.++|+.+++.++.+++++++++++++|+++....+
T Consensus 238 sK~~~~G~riG~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 314 (379)
T TIGR00707 238 AKGLGGGVPIGATLAKEEVAEAFTP---GDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGKNYP 314 (379)
T ss_pred cccccCCcccEEEEEcHHHHhhhcC---CCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999998873 3345678899999999999999887778899999999999999998765554
Q ss_pred CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHHHH
Q 011959 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~ 470 (474)
. ..+++.|.++++.+..+ ..++.+.|.++||++.|.+.+.+|++ +.+|++++++++++|+++
T Consensus 315 ~-~~~~~~g~~~~~~~~~~---------------~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 315 N-KEVRGKGLMLGIELEAP---------------CKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEEA 378 (379)
T ss_pred C-CccccCceEEEEEecCc---------------HHHHHHHHHHCCcEEeeCCCCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 3 34556788888887421 25788899999999999776677876 578999999999999876
Q ss_pred H
Q 011959 471 L 471 (474)
Q Consensus 471 ~ 471 (474)
+
T Consensus 379 ~ 379 (379)
T TIGR00707 379 I 379 (379)
T ss_pred C
Confidence 3
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=321.40 Aligned_cols=395 Identities=19% Similarity=0.238 Sum_probs=313.8
Q ss_pred CCCchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHH
Q 011959 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (474)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (474)
..+.++|+++.+...++...+ .++. +.-.++.-|.|++|+|||.+||..+..++.++|++||.+++++..
T Consensus 34 sIPGPks~~l~kel~~v~~t~---~v~F-------~~dYEkS~GNYlvDvDGN~lLDvYsQIsSvplGYn~P~LvK~a~~ 103 (484)
T KOG1405|consen 34 SIPGPKSQELKKELDKVQDTE---AVHF-------FVDYEKSIGNYLVDVDGNRLLDVYSQISSVPLGYNNPALVKAAQQ 103 (484)
T ss_pred cCCCchhHHHHHHHhHhhccc---ceEE-------ehhhhhhcCceEEecCCCeeehhhhhhcccccCCCCHHHHHHhcC
Confidence 456789999998888776542 2222 344678999999999999999999999999999999999998764
Q ss_pred -HHHh-cC---CCC-C-CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh--------------------
Q 011959 127 -TMKK-GT---SFG-A-PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-------------------- 178 (474)
Q Consensus 127 -~~~~-~~---~~~-~-~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~-------------------- 178 (474)
++.+ .. ..| + +.+..+.|.+.+....| +.++|++.-+|+.|||.|++.|..+
T Consensus 104 p~~~~~lvnRPALg~fP~kd~~~~l~~~ll~~APKG~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~~~s~~e~eScm 183 (484)
T KOG1405|consen 104 PQNATMLVNRPALGNFPPKDFAEKLRQSLLSIAPKGQKQVITMLCGSCANENAYKTAFIWYRAKERGQAGFSAEELESCM 183 (484)
T ss_pred hHHHHHHhccccccCCChhhHHHHHHHHHHhhCcchHHHHHHHhccccccHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 2222 11 112 2 34555666666777778 7889999999999999999987433
Q ss_pred ------cCCcEEEEEeCCCCCCchhHHHhcCCC-CccCCCCCCCCCCCCCCCceEEccC------C------CHHHHHHH
Q 011959 179 ------TGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPF------N------DVSALENL 239 (474)
Q Consensus 179 ------~~~~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~------~------d~~~le~~ 239 (474)
++.-.|+.|.++|||.+.+.++.+.+. +..+..|..+.-... .+.+.+|. | .++++|++
T Consensus 184 ~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~SKpIHKldiPaFdWPiA~--fP~ykYPLdenv~~N~ked~~Cl~~Ve~l 261 (484)
T KOG1405|consen 184 INQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIPAFDWPIAP--FPRYKYPLDENVAENKKEDQGCLAEVEDL 261 (484)
T ss_pred hcCCCCCCceeeeeeccccccccccccccccCccccccCCCCCCCCCCC--CccccCChhhhhhhhhhhhhhHHHHHHHH
Confidence 123359999999999999999888653 455555544432111 12333443 2 47889999
Q ss_pred HhcCC---CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCC--Cceeehh
Q 011959 240 FENNK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT--PDLTTLG 313 (474)
Q Consensus 240 l~~~~---~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~--pdi~t~s 313 (474)
|.++. ..++++|+||+|++||....+++|+++|+++|+|||+.+|+||||||. -+|+.|+.+|+++. ||++|||
T Consensus 262 i~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFS 341 (484)
T KOG1405|consen 262 IVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFS 341 (484)
T ss_pred HHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehh
Confidence 98754 468999999999999999999999999999999999999999999999 89999999999885 7999999
Q ss_pred hhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-
Q 011959 314 KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG- 392 (474)
Q Consensus 314 K~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~- 392 (474)
|-|-. .|++ -.+ .+++..++.++.||.+.|.-+....++++.+.++++.+++...+++|..+|.++..++|
T Consensus 342 KK~q~---gGff-h~~----~frpn~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~ 413 (484)
T KOG1405|consen 342 KKFQT---GGFF-HDE----EFRPNEPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPG 413 (484)
T ss_pred hhhhc---Cccc-cCc----ccCCCchHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 99873 2333 232 34444566788999999999999999999999999999999999999999999999887
Q ss_pred CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHH
Q 011959 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~ 470 (474)
.+-..||+|.|+.+++..+ ...+.+...+.-+|+.+..++...+|+ ++..++.+.+-++++|++.
T Consensus 414 ~~~~~RGrGTF~a~d~ps~-------------~~Rdk~i~~~~~nGv~~GGCg~~siRfRPsLvf~~~Ha~i~l~~~~k~ 480 (484)
T KOG1405|consen 414 KINNLRGRGTFIAWDCPSG-------------SIRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFLDIFDKI 480 (484)
T ss_pred hhhcccccceEEEEeCCCh-------------HHHHHHHHHHHHcCceecccccceeeeccceeehhhhHHHHHHHHHHH
Confidence 4557899999999988543 344678889999999999988776655 7899999999999999999
Q ss_pred HhhC
Q 011959 471 LRQI 474 (474)
Q Consensus 471 ~~~~ 474 (474)
++.+
T Consensus 481 l~~l 484 (484)
T KOG1405|consen 481 LAGL 484 (484)
T ss_pred hccC
Confidence 8764
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=330.32 Aligned_cols=374 Identities=20% Similarity=0.301 Sum_probs=285.9
Q ss_pred hHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHh
Q 011959 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK 130 (474)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~ 130 (474)
..+|.-+..++|.|.....+...... ...+++++++|+++| .||++||||.++ +++|. +||+|++++.+++++
T Consensus 65 ~~~~~~~l~~~~~p~~l~~~~~~~~~--~~~~~~~~~~G~~i~-~~G~~~id~~s~---~~lgl~~~~~i~ea~~~al~~ 138 (481)
T PLN02822 65 TEKEIDELCDEWTPEPLIPPITEEMR--PEPPVLESAAGPHTI-INGKDVVNFASA---NYLGLIGNEKIKESCTSALEK 138 (481)
T ss_pred CHHHHHHHHhcCCCCCCCCCCchhcc--ccCCceecCCCCeEE-ECCceEEEeECC---CcCCCCCCHHHHHHHHHHHHH
Confidence 45678888899999887655432222 124578999999999 899999999998 77777 699999999999988
Q ss_pred -cCC------CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcC
Q 011959 131 -GTS------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG 203 (474)
Q Consensus 131 -~~~------~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g 203 (474)
+.+ ++++.+...+|+++|+++++..+.++|++|++ ++..+++ ++++++++|++++.||+.....+.+.+
T Consensus 139 ~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~-a~~sai~---a~~~~gd~Ii~d~~~H~s~~~~~~ls~ 214 (481)
T PLN02822 139 YGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLS-TIFSVIP---AFCKKGDIIVADEGVHWGIQNGLYLSR 214 (481)
T ss_pred hCCCCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHH-HHHHHHH---HhCCCCCEEEEeCCccHHHHHHHHHcC
Confidence 432 33567889999999999998677788876555 7888888 788899999999999987655554433
Q ss_pred CCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC------CCe-EEEEEccccCCCCcccCCHHHHHHHHHHH
Q 011959 204 SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK------GEI-AAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 204 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~------~~~-a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
.+++.++|||.++++..+++.. +++ ++|++|++++++|.+.| +++|+++|
T Consensus 215 -------------------~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~----L~~i~~l~ 271 (481)
T PLN02822 215 -------------------STIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP----LDEIVRLK 271 (481)
T ss_pred -------------------CeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC----HHHHHHHH
Confidence 2467889999999988776421 234 89999999999999999 99999999
Q ss_pred HHhCCEEEEecccc-C-c-ccCCCccccccCC---CCceee--hhhhcC-CCcceEEEEecHHHHHhhcCCCCcccccCC
Q 011959 277 KENGALLIFDEVMT-G-F-RLAYGGAQEYFGV---TPDLTT--LGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 347 (474)
Q Consensus 277 ~~~g~llI~DEv~~-g-~-r~g~~~~~~~~g~---~pdi~t--~sK~l~-~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~ 347 (474)
++||++||+||+|+ | + ++|. +..+++++ .+|+++ |||+++ .| ||+++++++++.++. ..+..+|
T Consensus 272 ~k~~~~LIvDEa~s~gvlG~~G~-G~~e~~~v~~~~~dii~~s~sKalg~~G---G~i~g~~~ii~~~~~---~~~~~~f 344 (481)
T PLN02822 272 EKYRFRVLLDESNSFGVLGKSGR-GLSEHFGVPIEKIDIITAAMGHALATEG---GFCTGSARVVDHQRL---SSSGYVF 344 (481)
T ss_pred HHcCCEEEEECCccccccCCCCC-ChHHHcCCCCCCCeEEEecchhhhhhCC---eEEEcCHHHHHHHHh---cCCceee
Confidence 99999999999996 2 2 3443 46788988 688875 889998 33 889999999998873 2345577
Q ss_pred CCC--hHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccch
Q 011959 348 SGN--PLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSET 424 (474)
Q Consensus 348 ~~~--~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~ 424 (474)
+++ |..++|++++|+.+++ ++++++++++++++++.|++.. ++.....+.+.++.+.+.+.. . ....+.
T Consensus 345 sa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~---g~~~~~~~~spi~~l~l~~~~-~----~~~~~~ 416 (481)
T PLN02822 345 SASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIP---GLSIGSNTLSPIVFLHLEKST-G----SAKEDL 416 (481)
T ss_pred ccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---CcccCCCCCCCEEEEEeCCCc-c----cccchH
Confidence 665 8889999999998876 6788999999999999998752 222223345667777774210 0 001122
Q ss_pred HHHHHHHHHHH-HCCeEecccCC---------cceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 425 TKFARFYRGML-EEGVYFAPSQF---------EAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 425 ~~~~~~~~~l~-~~Gv~v~~~~~---------~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
....++++.|+ ++||++.+..+ +.+|+ +..+|++||++++++|++++++
T Consensus 417 ~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~ 477 (481)
T PLN02822 417 SLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAAS 477 (481)
T ss_pred HHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 34568899998 88999987532 23565 5779999999999999998865
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=309.42 Aligned_cols=361 Identities=18% Similarity=0.261 Sum_probs=251.8
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCC-CCCHHHHHHHHHHHHh-
Q 011959 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGETMKK- 130 (474)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~~- 130 (474)
.+....|+++.+. +.+.. ++.++.+.+++|+++||.||++||||.++ +++| |+||+|++|+.+++++
T Consensus 8 ~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~G~~~~d~~g~~~ld~~s~---~~lgl~~~p~v~~A~~~~l~~~ 76 (402)
T PRK07505 8 NKKRINRAEKFWD-------AAYDE-GLNGLTVGEREGILITLADGHTFVNFVSC---SYLGLDTHPAIIEGAVDALKRT 76 (402)
T ss_pred HHHHHHhhHHHHH-------HHHhc-ccccceeeccCCccEEecCCceEEEeecC---CccCCCCCHHHHHHHHHHHHHh
Confidence 4455666665432 22211 22467899999999999999999999985 8999 9999999999999987
Q ss_pred c-CCCC-----CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHh--hc-CCcEEEEEeCCCCCCchhHHHh
Q 011959 131 G-TSFG-----APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA--FT-GRERIIKFEGCYHGHADPFLVK 201 (474)
Q Consensus 131 ~-~~~~-----~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~--~~-~~~~ii~~~~~yhg~~~~~~~~ 201 (474)
+ ..++ ...+...+++++|++.++. ++++++||++|++.++++++. ++ ++.++|+++++|||......
T Consensus 77 g~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~-- 152 (402)
T PRK07505 77 GSLHLSSSRTRVRSQILKDLEEALSELFGA--SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILK-- 152 (402)
T ss_pred CCCCCCccchhhhhHHHHHHHHHHHHHhCC--CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhh--
Confidence 3 2221 2356788999999999854 778888999999999998653 24 56779999999998421110
Q ss_pred cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCC
Q 011959 202 AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 281 (474)
Q Consensus 202 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~ 281 (474)
+ ... ...++..+|++|+++++++++.+ ..+++++||++++ |.+.+ +++|+++|++||+
T Consensus 153 -~-------------~~~-~~~~v~~~~~~d~~~l~~~~~~~--~~~~vl~~p~~~~-G~~~~----~~~i~~l~~~~~~ 210 (402)
T PRK07505 153 -G-------------ICA-DETEVETIDHNDLDALEDICKTN--KTVAYVADGVYSM-GGIAP----VKELLRLQEKYGL 210 (402)
T ss_pred -h-------------hhh-cCCeEEEeCCCCHHHHHHHHhcC--CCEEEEEeccccc-CCcCC----HHHHHHHHHHcCC
Confidence 0 000 01257788999999999988643 4688899998765 66777 8999999999999
Q ss_pred EEEEeccc--cCc-ccCCCccccccCC-CCcee----ehhhhcCCCcceEEEE-ecHHHHHhhcCCCCcccccCCCC--C
Q 011959 282 LLIFDEVM--TGF-RLAYGGAQEYFGV-TPDLT----TLGKIIGGGLPVGAYG-GRRDIMEMVAPAGPMYQAGTLSG--N 350 (474)
Q Consensus 282 llI~DEv~--~g~-r~g~~~~~~~~g~-~pdi~----t~sK~l~~G~~iG~~~-~~~~i~~~~~~~~~~~~~~t~~~--~ 350 (474)
+||+||+| ++| ++|.++..++++. .||.+ |+||+++++ .|+++ .++++++.+.. ..+..||++ +
T Consensus 211 ~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~--Gg~~~~~~~~~~~~~~~---~~~~~t~~~~~~ 285 (402)
T PRK07505 211 FLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS--GGVIMLGDAEQIELILR---YAGPLAFSQSLN 285 (402)
T ss_pred EEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc--CeEEEeCCHHHHHHHHH---hCCCceeCCCCC
Confidence 99999998 567 7777666677887 67743 799999853 37765 47888888763 223445554 4
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHH
Q 011959 351 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARF 430 (474)
Q Consensus 351 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 430 (474)
++++++++++++.+.++.+.+. .+++++.+..... . ....+++.+.++...... +.....++
T Consensus 286 ~~a~aa~~a~l~~~~~~~~~~~----~~~l~~~~~~~~~-~-~~~~~~g~~~~i~~~~~~------------~~~~~~~~ 347 (402)
T PRK07505 286 VAALGAILASAEIHLSEELDQL----QQKLQNNIALFDS-L-IPTEQSGSFLPIRLIYIG------------DEDTAIKA 347 (402)
T ss_pred HHHHHHHHHHHHHHhccCcHHH----HHHHHHHHHHHHH-H-HHhcCCCCCCCEEEEEeC------------CHHHHHHH
Confidence 5899999999987655444332 2333333322110 0 011124444443222111 11234678
Q ss_pred HHHHHHCCeEecccCC-------cceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 431 YRGMLEEGVYFAPSQF-------EAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 431 ~~~l~~~Gv~v~~~~~-------~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+.|+++||++.+..+ ..+|++ +.+|+|++++++++|++++++
T Consensus 348 ~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 348 AKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred HHHHHHCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 8999999999987521 346664 568999999999999998864
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=285.87 Aligned_cols=333 Identities=23% Similarity=0.319 Sum_probs=264.8
Q ss_pred EeeccCEEEEcCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHh-cCCC------CCCCHHHHHHHHHHHhhCCCCCe
Q 011959 86 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVISAVPSIEM 157 (474)
Q Consensus 86 ~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~~------~~~~~~~~~la~~l~~~~~~~~~ 157 (474)
.+..+..++ .+|++++||++| +|||. .||++++++.+.+++ +... .++.+...+|.++|++++ +.|.
T Consensus 27 ~~~~~~~~~-~~~~~~~nf~SN---dYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~-g~e~ 101 (388)
T COG0156 27 DRRQGLAIR-ADGRKVLNFCSN---DYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL-GAEA 101 (388)
T ss_pred cccCCccee-cCCceeEeeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh-CCCc
Confidence 334455554 669999999999 99999 599999999999988 4322 246788888999998888 7889
Q ss_pred EEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHH
Q 011959 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (474)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le 237 (474)
+++.+||..||..++. ++.+++++|+.|.-.|.+....+.++ ..+++.++|||+++||
T Consensus 102 al~f~SGy~AN~~~i~---~l~~~~dli~~D~lnHASiidG~rls-------------------~a~~~~f~HnD~~~Le 159 (388)
T COG0156 102 ALLFSSGFVANLGLLS---ALLKKGDLIFSDELNHASIIDGIRLS-------------------RAEVRRFKHNDLDHLE 159 (388)
T ss_pred EEEEcccchhHHHHHH---HhcCCCcEEEEechhhhhHHHHHHhC-------------------CCcEEEecCCCHHHHH
Confidence 9999999999999999 78899999999999999765554433 3468899999999999
Q ss_pred HHHhcCC---CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCc---e
Q 011959 238 NLFENNK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPD---L 309 (474)
Q Consensus 238 ~~l~~~~---~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pd---i 309 (474)
++++++. .+.+.|++|.+++|.|++.| |++|.+||+||+++|++||+| .|+ .....+..+++|+.++ +
T Consensus 160 ~~l~~~~~~~~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi 235 (388)
T COG0156 160 ALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDI 235 (388)
T ss_pred HHHHhhhccCCCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceE
Confidence 9998632 14689999999999999999 999999999999999999999 677 5545667788888754 3
Q ss_pred e--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHH
Q 011959 310 T--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIID 386 (474)
Q Consensus 310 ~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~ 386 (474)
+ ||||+||+ --|++.+++.+++.+....+.+.++| +.+|..++++.++|+.+++ ++.+++++++..++++.+..
T Consensus 236 ~~gTlsKAlGs--~Gg~v~g~~~~~d~L~~~ar~~ifSt-alpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~ 312 (388)
T COG0156 236 IVGTLGKALGS--SGGYIAGSAALIDYLRNRARPFIFST-ALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKA 312 (388)
T ss_pred EEEEchhhhcc--cCceeeCcHHHHHHHHHhCCceeccC-CCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence 3 89999995 14667899999999987667777755 7889999999999999987 78899999999999966654
Q ss_pred HhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcc-------eEE--ecCCcH
Q 011959 387 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------GFT--SLAHSS 457 (474)
Q Consensus 387 ~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-------~~~--~~~~t~ 457 (474)
..... .+....++.+.+ .+...+.++...|+++||++.+..++. +|+ +..||+
T Consensus 313 ~~~~~-----~~s~s~I~pv~~-------------gd~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~ 374 (388)
T COG0156 313 LGLVL-----LPSESPIIPVIL-------------GDEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTE 374 (388)
T ss_pred cCCcc-----CCCCCCeeeeEe-------------CCHHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCH
Confidence 32111 112222333333 345567888999999999998776554 344 688999
Q ss_pred HHHHHHHHHHHHH
Q 011959 458 DDIQHTITAAEKV 470 (474)
Q Consensus 458 e~i~~~l~~l~~~ 470 (474)
+||+.+++.|.++
T Consensus 375 ~~I~~l~~~l~~~ 387 (388)
T COG0156 375 EDIDRLAEALSEV 387 (388)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=287.53 Aligned_cols=326 Identities=19% Similarity=0.208 Sum_probs=246.2
Q ss_pred CCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHhc-CCC------CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~-~~~------~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~ 168 (474)
+|+++|+|+++ +|||. +||+|++++.+++++. ... .+..+...+|+++++++++ .+++++++||++|+
T Consensus 43 ~~~~~~~~~sn---~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g-~~~~~~~~SG~~An 118 (406)
T PRK13393 43 GPREVTVWCSN---DYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHG-KEAALLFTSGYVSN 118 (406)
T ss_pred CCccEEEeecc---cccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhC-CCcEEEeCCcHHHH
Confidence 46899999999 99999 6999999999999873 211 1235578899999999985 57899999999999
Q ss_pred HHHHH-HhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC-CCC
Q 011959 169 MGVLR-LARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-KGE 246 (474)
Q Consensus 169 ~~al~-~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~ 246 (474)
+.+++ +++.. ++++|+++..||+.....+...+. ++..++++|++++++.++.. +++
T Consensus 119 ~~ai~~l~~~~--~g~~I~~~~~~H~s~~~~~~~~g~-------------------~~~~~~~~d~~~l~~~l~~~~~~~ 177 (406)
T PRK13393 119 WAALSTLGSRL--PGCVILSDELNHASMIEGIRHSRA-------------------EKRIFRHNDPADLERKLSDLDPHR 177 (406)
T ss_pred HHHHHHhhcCC--CCCEEEEccchhHHHHHHHHHcCC-------------------eEEEeCCCCHHHHHHHHHhccCCC
Confidence 99999 43322 456889999999977666543322 24567888999999988754 235
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--ccCCCccccccCCC--Ccee--ehhhhcCCC
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVT--PDLT--TLGKIIGGG 319 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~~--pdi~--t~sK~l~~G 319 (474)
+++|++|++++++|.+.| +++|+++|++||+++|+||+|+ |+ +.|..+ .+++++. +|++ ||||+++.
T Consensus 178 ~~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~-~~~~~~~~~~~i~~~tlsKa~g~- 251 (406)
T PRK13393 178 PKLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGI-AEREGLADRLTIIEGTLAKAFGV- 251 (406)
T ss_pred CEEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch-hhhcCCCCCCeEEEEeCchhhcc-
Confidence 789999999999999999 9999999999999999999995 77 445433 3666665 5676 89999983
Q ss_pred cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe
Q 011959 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP-GTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (474)
..||+++++++++.+......+. .+.+.+|.+++++.++|+.+++. ...++++++++++++.|+++. +. .++
T Consensus 252 -~GG~~~~~~~~~~~l~~~~~~~~-~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~---~~~ 324 (406)
T PRK13393 252 -MGGYITGSAALCDFIRSFASGFI-FTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKAG--IP---HLP 324 (406)
T ss_pred -cCceeeCCHHHHHHHHHhCcCce-ecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC--CC---cCC
Confidence 22788899999888864322222 35678899999999999987653 234566788888888887642 22 235
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC-------CcceEE--ecCCcHHHHHHHHHHHH
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ-------FEAGFT--SLAHSSDDIQHTITAAE 468 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~-------~~~~~~--~~~~t~e~i~~~l~~l~ 468 (474)
+.|.++.+.+.+ .....++.+.|++ +||++.+.. ...+|+ ++.+|++|+|+++++|+
T Consensus 325 ~~~~i~~v~~~~-------------~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~ 391 (406)
T PRK13393 325 NPSHIVPVMVGD-------------PVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALS 391 (406)
T ss_pred CCCCeEEEEeCC-------------HHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 677777765421 1234678888887 599987642 234666 57899999999999999
Q ss_pred HHHhh
Q 011959 469 KVLRQ 473 (474)
Q Consensus 469 ~~~~~ 473 (474)
+++++
T Consensus 392 ~~~~~ 396 (406)
T PRK13393 392 EIWAR 396 (406)
T ss_pred HHHHh
Confidence 98765
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=284.39 Aligned_cols=327 Identities=17% Similarity=0.176 Sum_probs=251.1
Q ss_pred CCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHh-cCCC------CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~~------~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~ 168 (474)
.++++|||+++ +|||. .||++++++.+.+++ +++. .+......+|.+.|++++ +.|.+++++||..||
T Consensus 100 ~~r~~l~FsSn---dYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~-g~e~all~sSGy~AN 175 (476)
T PLN02955 100 RFKKLLLFSGN---DYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK-KKEDCLVCPTGFAAN 175 (476)
T ss_pred CCceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH-CCCcEEEECChHHHH
Confidence 45789999999 99999 599999999999987 3322 235667778888888888 788999999999999
Q ss_pred HHHHHHhHh-----------hcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHH
Q 011959 169 MGVLRLARA-----------FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (474)
Q Consensus 169 ~~al~~ar~-----------~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le 237 (474)
..++...-. ..+++.+|+.|...|.+....+.++.. ....+++.++|||+++|+
T Consensus 176 ~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~---------------~~~a~~~~f~HND~~~Le 240 (476)
T PLN02955 176 MAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAER---------------QGNVEVFVYRHCDMYHLN 240 (476)
T ss_pred HHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccc---------------cCCceEEEeCCCCHHHHH
Confidence 999984210 135677888899999876655543321 001247889999999999
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc--ccCCCccccccCCCCce----ee
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF--RLAYGGAQEYFGVTPDL----TT 311 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~--r~g~~~~~~~~g~~pdi----~t 311 (474)
+++++++++.+.|++|+++++.|.+.| |++|.++|++||++||+||+|+.+ .....+..+++|+.+|+ .|
T Consensus 241 ~~L~~~~~~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~T 316 (476)
T PLN02955 241 SLLSSCKMKRKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGT 316 (476)
T ss_pred HHHHhCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEe
Confidence 999877666789999999999999999 999999999999999999999744 33336677889987765 48
Q ss_pred hhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
|||++|. +.|++++++++++.++..++.+.++| +.+|..+++++++++.+.+ +..+++++++.+++++.+
T Consensus 317 LsKA~G~--~GGfi~gs~~~~~~l~~~~~~~ifSt-alpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~~------ 387 (476)
T PLN02955 317 LSKAAGC--HGGFIACSKKWKQLIQSRGRSFIFST-AIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKALS------ 387 (476)
T ss_pred Cccchhc--cCceeecHHHHHHHHHHhCCCCeecc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc------
Confidence 9999973 45778999999999986666677766 5667777788899998765 456677888888887631
Q ss_pred cCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcc-------eEE--ecCCcHHHHH
Q 011959 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------GFT--SLAHSSDDIQ 461 (474)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-------~~~--~~~~t~e~i~ 461 (474)
+... ...++.+.+ ++......+.+.|+++||++.+..++. +|+ +..||++||+
T Consensus 388 -G~~~----~sPI~pI~i-------------g~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId 449 (476)
T PLN02955 388 -GVDI----SSPIISLVV-------------GNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVK 449 (476)
T ss_pred -CCCC----CCCEEEEEe-------------CCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHH
Confidence 2111 133444444 344556788999999999998776543 454 5799999999
Q ss_pred HHHHHHHHHHhh
Q 011959 462 HTITAAEKVLRQ 473 (474)
Q Consensus 462 ~~l~~l~~~~~~ 473 (474)
+++++|.++.+.
T Consensus 450 ~lv~~L~~~~~~ 461 (476)
T PLN02955 450 KLITALSSCLDF 461 (476)
T ss_pred HHHHHHHHHHhh
Confidence 999999987653
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=285.38 Aligned_cols=328 Identities=21% Similarity=0.213 Sum_probs=244.0
Q ss_pred CCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHhc-CC------CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TS------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~-~~------~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~ 168 (474)
+|+++++|.++ +|||. +||+|++|+.+++++. .. ..+..+...+|++.++++++ .+.+++++||++||
T Consensus 43 ~~~~~~~~~sn---~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g-~~~~l~~~sG~~an 118 (402)
T TIGR01821 43 GAKDVTVWCSN---DYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG-KESALVFTSGYVAN 118 (402)
T ss_pred CCeeEEEeEcc---CcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhC-CCeEEEECchHHHH
Confidence 46999999999 99999 5999999999999883 22 12356778899999999985 56789999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC-CCe
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEI 247 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~ 247 (474)
+.++++++.. .++++|+.+..||+.....+...+. ++..++++|+++++++++... +++
T Consensus 119 ~~ai~~l~~~-~~~~~v~~~~~~h~s~~~~~~~~g~-------------------~~~~~~~~d~~~l~~~l~~~~~~~~ 178 (402)
T TIGR01821 119 DATLATLAKI-IPGCVIFSDELNHASMIEGIRHSGA-------------------EKFIFRHNDVAHLEKLLQSVDPNRP 178 (402)
T ss_pred HHHHHHhhCC-CCCCEEEEcchHhHHHHHHHHHcCC-------------------eEEEECCCCHHHHHHHHHhccCCCC
Confidence 9999975432 2467778888899866555443322 234567789999999987543 357
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--ccCCCccccccCC--CCcee--ehhhhcCCCc
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV--TPDLT--TLGKIIGGGL 320 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~--~pdi~--t~sK~l~~G~ 320 (474)
++|++|++++++|.+.| +++|+++|++||++||+||+|+ |+ ..|. +..+++++ .+|++ ||||+++.
T Consensus 179 ~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~-g~~~~~~~~~~~div~~t~sKa~g~-- 251 (402)
T TIGR01821 179 KIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGG-GIAERDGLMHRIDIIEGTLAKAFGV-- 251 (402)
T ss_pred eEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCC-ccchhccCCCCCeEEEEechhhhcc--
Confidence 89999999999999998 9999999999999999999996 65 3333 23455665 36776 89999983
Q ss_pred ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee
Q 011959 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP-GTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (474)
..||+++++++++.+......+. .+.+.+|.++++++++|+.+++. .+.++++++++++++.|+++. +.+ +.+
T Consensus 252 ~GG~i~~~~~~~~~l~~~~~~~~-~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~---~~~ 325 (402)
T TIGR01821 252 VGGYIAASRKLIDAIRSYAPGFI-FTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEALG--IPV---IPN 325 (402)
T ss_pred CCceeecCHHHHHHHHHhCcCce-ecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHcC--CCc---CCC
Confidence 22788899999988864322222 35578999999999999988763 456667788888888887652 221 234
Q ss_pred eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC-------CcceEE--ecCCcHHHHHHHHHHHHH
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ-------FEAGFT--SLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~-------~~~~~~--~~~~t~e~i~~~l~~l~~ 469 (474)
.+.++.+.+.. .....++.+.|++ +||++.+.. ...+|+ ++.+|++|+++++++|++
T Consensus 326 ~~~i~~i~~~~-------------~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~ 392 (402)
T TIGR01821 326 PSHIVPVIIGD-------------AALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLL 392 (402)
T ss_pred CCCEEEEEeCC-------------HHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 56666665421 1234568888875 599987642 234555 468999999999999999
Q ss_pred HHhhC
Q 011959 470 VLRQI 474 (474)
Q Consensus 470 ~~~~~ 474 (474)
+++++
T Consensus 393 ~~~~~ 397 (402)
T TIGR01821 393 VWDRL 397 (402)
T ss_pred HHHHc
Confidence 88753
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=279.22 Aligned_cols=326 Identities=21% Similarity=0.224 Sum_probs=242.2
Q ss_pred CCEEEeccCChhhccCCCC-CHHHHHHHHHHHHhc-CC------CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHA-DDQVLAALGETMKKG-TS------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~-~~------~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~ 169 (474)
|++++||+++ +|||++ ||+|++++.+++++. .. +.++.+...+|+++|+++++ .+..++++||++|++
T Consensus 45 ~~~~~~~~s~---dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g-~~~~~~~~sG~~an~ 120 (407)
T PRK09064 45 EREVTVWCSN---DYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG-KEAALVFTSGYVSND 120 (407)
T ss_pred CceEEEEECC---CCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC-CCcEEEECcHHHHHH
Confidence 5899999999 999996 999999999999873 21 12356778999999999885 567888899999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC-CCeE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIA 248 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~a 248 (474)
.++++++.. .++.+|+.+..+|+.....+...+. +...++++|+++++++++... ++++
T Consensus 121 ~ai~~l~~~-~~~~~i~~~~~~h~s~~~~~~~~~~-------------------~~~~~~~~d~~~le~~l~~~~~~~~~ 180 (407)
T PRK09064 121 ATLSTLAKL-IPDCVIFSDELNHASMIEGIRRSRC-------------------EKHIFRHNDVAHLEELLAAADPDRPK 180 (407)
T ss_pred HHHHHHhCC-CCCCEEEEeCcchHHHHHHHHHcCC-------------------cEEEECCCCHHHHHHHHHhccCCCCe
Confidence 999975433 3456777776667754433332221 245667889999999987542 4678
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--ccCCCccccccCC--CCcee--ehhhhcCCCcc
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV--TPDLT--TLGKIIGGGLP 321 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~--~pdi~--t~sK~l~~G~~ 321 (474)
+|++|++++++|.+.| +++|+++|++||++||+||+|+ |+ +.|..+ .++.++ .+|++ ||||++|. .
T Consensus 181 ~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~--~ 253 (407)
T PRK09064 181 LIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGV--M 253 (407)
T ss_pred EEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhc--c
Confidence 9999999999999998 9999999999999999999996 64 445433 456665 46777 89999973 2
Q ss_pred eEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeee
Q 011959 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP-GTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (474)
Q Consensus 322 iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (474)
.||+++++++++.+......+. .+.+.+|.++++++++|+.+++. ...++++++++++++.|+++. +.+ +.+.
T Consensus 254 GG~~~~~~~~~~~l~~~~~~~~-~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~---~~~~ 327 (407)
T PRK09064 254 GGYIAGSAALVDAVRSYAPGFI-FTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAAG--IPV---MPNE 327 (407)
T ss_pred CceEecCHHHHHHHHHhCcccc-ccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC--CCC---CCCC
Confidence 3788899999988764322222 25578899999999999988763 346788889999999988752 221 2234
Q ss_pred ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccCC-------cceEE--ecCCcHHHHHHHHHHHHHH
Q 011959 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF-------EAGFT--SLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~-------~~~~~--~~~~t~e~i~~~l~~l~~~ 470 (474)
+.++.+.+.+ .....++.+.|++ +||++.+..+ ..+|+ ++.+|++|+++++++|+++
T Consensus 328 ~~iv~i~~~~-------------~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~ 394 (407)
T PRK09064 328 SHIVPVMVGD-------------PEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEV 394 (407)
T ss_pred CCEEEEEeCC-------------HHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 5666555421 1234678888875 5999976422 34565 4778999999999999998
Q ss_pred Hhh
Q 011959 471 LRQ 473 (474)
Q Consensus 471 ~~~ 473 (474)
+++
T Consensus 395 ~~~ 397 (407)
T PRK09064 395 WAR 397 (407)
T ss_pred HHH
Confidence 865
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=275.86 Aligned_cols=330 Identities=16% Similarity=0.200 Sum_probs=236.7
Q ss_pred EeccCChhhccCCC-CCHHHHHHHHHHHHh-cCC------CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHH
Q 011959 102 IDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTS------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLR 173 (474)
Q Consensus 102 iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~------~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~ 173 (474)
|||.++ +|||. .||++++++.+++++ +.+ +++......+|.+++++++ +.+..++++||+.|+..++.
T Consensus 1 ~~f~s~---dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~-g~e~al~~~sG~~a~~~~i~ 76 (392)
T PLN03227 1 LNFATH---DFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFL-GTESAILYSDGASTTSSTVA 76 (392)
T ss_pred CCCcCc---CccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHh-CCCcEEEecCcHHHHHHHHH
Confidence 578888 99999 599999999999987 322 2223457788999999888 45678888889999998887
Q ss_pred HhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC----------
Q 011959 174 LARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---------- 243 (474)
Q Consensus 174 ~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~---------- 243 (474)
.+.++++.|+.+...|+.....+...+ ..+..++++|++++++.++..
T Consensus 77 ---~l~~~GD~Vl~~~~~h~s~~~~~~l~~-------------------~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~ 134 (392)
T PLN03227 77 ---AFAKRGDLLVVDRGVNEALLVGVSLSR-------------------ANVRWFRHNDMKDLRRVLEQVRAQDVALKRK 134 (392)
T ss_pred ---HhCCCCCEEEEeccccHHHHHHHHHcC-------------------CeEEEeCCCCHHHHHHHHHHhhhhccccccc
Confidence 345555555555555554433322211 135667888888887765431
Q ss_pred -CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C-c-ccCCCccccccCCCC----ceeehh--
Q 011959 244 -KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G-F-RLAYGGAQEYFGVTP----DLTTLG-- 313 (474)
Q Consensus 244 -~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~-r~g~~~~~~~~g~~p----di~t~s-- 313 (474)
..+++.|++||+++++|.+.| +++|+++|++||++||+||+|+ | + ++|. +..+++|+.| |++++|
T Consensus 135 ~~~~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g~~p~~~~Div~~sls 209 (392)
T PLN03227 135 PTDQRRFLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAGLKPMVHAEIVTFSLE 209 (392)
T ss_pred cCCCcEEEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cHHHHcCCCCCCCceEEEeech
Confidence 135789999999999999999 9999999999999999999995 2 2 3444 6788999998 988654
Q ss_pred hhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCC--hHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 314 KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN--PLAMTAGIHTLKR-LKEPGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 314 K~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~--~~~~aaa~aal~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
|++ |++.|++++++++++.++. ..+..+|+++ |+.+++++++++. ++++++++++++++++++++|++. .
T Consensus 210 k~~--g~~gg~v~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~--~ 282 (392)
T PLN03227 210 NAF--GSVGGMTVGSEEVVDHQRL---SGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNS--S 282 (392)
T ss_pred hhh--hccCcEEecCHHHHHHHHH---hCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc--C
Confidence 554 3456778899999887752 2345567765 7788888877755 444789999999999999999873 4
Q ss_pred cCCeeEEeee--------ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-----------cceE-
Q 011959 391 AGHAICGGYI--------SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------EAGF- 450 (474)
Q Consensus 391 ~~~~~~v~~~--------g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----------~~~~- 450 (474)
++.+.++++. |+++++++.+.+... ...+......+.+.|+++|+++.+.+. ..+|
T Consensus 283 ~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~ 358 (392)
T PLN03227 283 HPYALKLRNRLVITSDPISPIIYLRLSDQEATR----RTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRV 358 (392)
T ss_pred CccccccccccccCCCCCCCEEEEEeCCHHHhh----hhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEE
Confidence 5556666653 557888884321100 001112346889999999999864321 1223
Q ss_pred -EecCCcHHHHHHHHHHHHHHHhh
Q 011959 451 -TSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 451 -~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++..||+||||+++++|++++++
T Consensus 359 ~~~~~~t~eei~~~~~~l~~~~~~ 382 (392)
T PLN03227 359 VANASHTREDIDKLLTVLGEAVEA 382 (392)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999875
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-32 Score=270.21 Aligned_cols=336 Identities=21% Similarity=0.270 Sum_probs=245.1
Q ss_pred eEEEeeccCEEEEcCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHhcC-CC------CCCCHHHHHHHHHHHhhCCC
Q 011959 83 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SF------GAPCLLENVLAEMVISAVPS 154 (474)
Q Consensus 83 ~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~-~~------~~~~~~~~~la~~l~~~~~~ 154 (474)
.++.+++|+++|+ +|++|||+.++ .++|| ++|+|++++.+++.+.. .. .+......+++++++++++
T Consensus 24 ~~~~~~~g~~~~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~- 98 (385)
T PRK05958 24 RPREGGAGRWLVV-DGRRMLNFASN---DYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG- 98 (385)
T ss_pred cccccCCCceeEe-CCceEEEeeCC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-
Confidence 3579999999997 99999999998 67898 78999999999997621 11 1346678899999999884
Q ss_pred CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHH
Q 011959 155 IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS 234 (474)
Q Consensus 155 ~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~ 234 (474)
.+.++++++|++++..+++ .+.++++.|++...+|+.....+...|. ++..++.+|++
T Consensus 99 ~~~~i~~~~g~~~~~~~l~---~~~~~gd~V~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~~ 156 (385)
T PRK05958 99 AERALLFSSGYAANLAVLT---ALAGKGDLIVSDKLNHASLIDGARLSRA-------------------RVRRYPHNDVD 156 (385)
T ss_pred CCcEEEECcHHHHHHHHHH---HhCCCCCEEEEeCccCHHHHHHHHhcCC-------------------ceEEeCCCCHH
Confidence 5677888889999998877 4455555555666777766555444332 23445666899
Q ss_pred HHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--ccCCCccccccC--CCCc-
Q 011959 235 ALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFG--VTPD- 308 (474)
Q Consensus 235 ~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g--~~pd- 308 (474)
++++.++..++++++++++++++++|.+.+ +++|+++|++||++||+||+|. |+ +.|... ...++ ..+|
T Consensus 157 ~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~~~ 231 (385)
T PRK05958 157 ALEALLAKWRAGRALIVTESVFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGL-AAEAGLAGEPDV 231 (385)
T ss_pred HHHHHHHhccCCCeEEEEEecccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCch-HHhhCCCCCCce
Confidence 999999754335788899999999998888 9999999999999999999995 43 233222 22222 3456
Q ss_pred --eeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Q 011959 309 --LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGII 385 (474)
Q Consensus 309 --i~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~ 385 (474)
+.++||++++ +.||+++++++++.+......+ ..+.+.+++.++++.++|+.+++ +.+.+++.++++++.+.|+
T Consensus 232 i~~~s~sK~~~~--~Gg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~ 308 (385)
T PRK05958 232 ILVGTLGKALGS--SGAAVLGSETLIDYLINRARPF-IFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLR 308 (385)
T ss_pred EEEEechhhccc--CCcEEEcCHHHHHHHHHhCccc-eecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 4589999974 3488899999988775322222 23446788888888899988766 3677888888899988888
Q ss_pred HHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-------CcceEEec--CCc
Q 011959 386 DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSL--AHS 456 (474)
Q Consensus 386 ~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~~~~--~~t 456 (474)
+.. +. .+++.|.++++.+.+ .....++.+.|.++||.+.+.. ...+|++. .++
T Consensus 309 ~~~----~~-~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~ 370 (385)
T PRK05958 309 ALG----FQ-LMDSQSAIQPLIVGD-------------NERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHT 370 (385)
T ss_pred HcC----CC-cCCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCC
Confidence 752 21 134567777776631 1234578899999999997632 23567754 479
Q ss_pred HHHHHHHHHHHHHHH
Q 011959 457 SDDIQHTITAAEKVL 471 (474)
Q Consensus 457 ~e~i~~~l~~l~~~~ 471 (474)
++++++++++|++++
T Consensus 371 ~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 371 EADIDRLLEALAEAL 385 (385)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998763
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=267.69 Aligned_cols=331 Identities=18% Similarity=0.200 Sum_probs=237.3
Q ss_pred CCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CC------CCCCCHHHHHHHHHHHhhC
Q 011959 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TS------FGAPCLLENVLAEMVISAV 152 (474)
Q Consensus 80 ~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~------~~~~~~~~~~la~~l~~~~ 152 (474)
+.+++..++.|.++||.+||+||||. +||+|++++.+++++. .. +....+...+|.+.|++++
T Consensus 43 ~~~~~~~~~~g~~~~~~~~~~YL~l~----------~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~ 112 (407)
T PRK07179 43 GKHLVLGKTPGPDAIILQSNDYLNLS----------GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFT 112 (407)
T ss_pred CceEEeecCCCCcEEEeecCCccCCC----------CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHh
Confidence 35888999999999999999999987 6899999999999762 11 1112356788889999888
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC
Q 011959 153 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 153 ~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 232 (474)
+.+.+++++||++|++.+++. +..+++.++.+...|......+...| .++..++++|
T Consensus 113 -g~~~~~~~~sG~~An~~~l~~---l~~~g~~v~~~~~~h~s~~~~~~~~g-------------------~~~~~~~~~d 169 (407)
T PRK07179 113 -GFESCLLCQSGWAANVGLLQT---IADPNTPVYIDFFAHMSLWEGVRAAG-------------------AQAHPFRHND 169 (407)
T ss_pred -CCCcEEEECCHHHHHHHHHHH---hCCCCCEEEEECCcCHHHHHHHHHCC-------------------CeEEEecCCC
Confidence 456789999999999999994 33333444445555543332222111 1345666789
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC-c--ccCCCccccccCCC--C
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-F--RLAYGGAQEYFGVT--P 307 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g-~--r~g~~~~~~~~g~~--p 307 (474)
+++|++.++++ ++++|+++++++++|.+.| +++|+++|++||++||+||+|+. . ++|.. ....+++. +
T Consensus 170 ~~~l~~~l~~~--~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~g-~~~~~~~~~~v 242 (407)
T PRK07179 170 VDHLRRQIERH--GPGIIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGAG-LVAELGLTSRV 242 (407)
T ss_pred HHHHHHHHHhc--CCeEEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCCc-hHHhcCCCCCC
Confidence 99999999743 4688999999999999999 99999999999999999999963 2 23322 24456664 3
Q ss_pred cee--ehhhhcCCCcceEEEEecHHHHHhhcCCCC-cccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 011959 308 DLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGP-MYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQG 383 (474)
Q Consensus 308 di~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~-~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~ 383 (474)
|++ +++|++++ |+|++++++++++.+..... ..+.+| .++..++++.++++.+.+ +..+++++++++++++.
T Consensus 243 di~~~S~sK~~g~--~~G~l~~~~~~~~~~~~~~~~~~~~~t--~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~ 318 (407)
T PRK07179 243 HFITASLAKAFAG--RAGIITCPRELAEYVPFVSYPAIFSST--LLPHEIAGLEATLEVIESADDRRARLHANARFLREG 318 (407)
T ss_pred CEEEeechHhhhc--cCeEEEeCHHHHHHHHHhCcCeeeCCC--CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 775 58999975 79999999998887753221 122233 245556666778887765 45788899999999999
Q ss_pred HHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEec----cc---CCcceEEe--cC
Q 011959 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PS---QFEAGFTS--LA 454 (474)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~---~~~~~~~~--~~ 454 (474)
|+++ ++ .+.+.+.++++.+.. ......+.+.|.++||++. |. +...+|++ ..
T Consensus 319 L~~~----g~--~v~~~~~i~~l~~~~-------------~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~ 379 (407)
T PRK07179 319 LSEL----GY--NIRSESQIIALETGS-------------ERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNAD 379 (407)
T ss_pred HHHc----CC--CCCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCC
Confidence 9875 22 223557777776532 1223567788999999733 32 12356664 56
Q ss_pred CcHHHHHHHHHHHHHHHhh
Q 011959 455 HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 455 ~t~e~i~~~l~~l~~~~~~ 473 (474)
+|++|+++++++|++++++
T Consensus 380 ~t~edi~~~~~~l~~~~~~ 398 (407)
T PRK07179 380 LTASDLDRVLEVCREARDE 398 (407)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 8999999999999998765
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=265.76 Aligned_cols=339 Identities=19% Similarity=0.263 Sum_probs=242.2
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHhc-CC---C---CCCCHHHHHHHHHHHhhCC
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TS---F---GAPCLLENVLAEMVISAVP 153 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~-~~---~---~~~~~~~~~la~~l~~~~~ 153 (474)
|.++.+++|+|+| .||++||||.++ +++|| ++|.+++++.+++.+. .. + .+..+++.++++++++.++
T Consensus 17 ~~~~~~~~g~~~~-~~g~~~id~~~~---~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g 92 (385)
T TIGR01825 17 IRVLESAQGPRVR-VNGKEVINLSSN---NYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKK 92 (385)
T ss_pred ccccccCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhC
Confidence 7889999999999 999999999987 77999 7999999999998752 21 1 1346788999999998885
Q ss_pred CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCH
Q 011959 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (474)
Q Consensus 154 ~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~ 233 (474)
. +..++.+||++++..+++. +.+++++|+.+..+|+.....+...+. +...+++.|+
T Consensus 93 ~-~~~i~~~sG~~a~~~a~~~---~~~~gd~vi~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~ 149 (385)
T TIGR01825 93 T-EAALVFQSGFNTNQGVLSA---LLRKGDIVLSDELNHASIIDGLRLTKA-------------------TKKIYKHADM 149 (385)
T ss_pred C-CcEEEECcHHHHHHHHHHH---hCCCCCEEEEEccccHHHHHHHHhcCC-------------------ceEEeCCCCH
Confidence 4 4556677889999988884 334444555666677655444433332 1223345588
Q ss_pred HHHHHHHhcCC-CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc---ccCCCccccccCCCCc-
Q 011959 234 SALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVTPD- 308 (474)
Q Consensus 234 ~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~---r~g~~~~~~~~g~~pd- 308 (474)
+++++.+++.. +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|..+ +.+. +...++++.+|
T Consensus 150 ~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~ 224 (385)
T TIGR01825 150 DDLDRVLRENPSYGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-GTVHHFGLEDKV 224 (385)
T ss_pred HHHHHHHHhhccCCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-ccHhhcCCCcCC
Confidence 99998887543 35789999999999999888 999999999999999999999543 2332 23344555444
Q ss_pred ---eeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Q 011959 309 ---LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGI 384 (474)
Q Consensus 309 ---i~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L 384 (474)
+.+|||++++ +.||+++++++++.+......+.. +...++..++++.++|+.+.+ .+..+++.++++++.+.|
T Consensus 225 ~i~~~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L 301 (385)
T TIGR01825 225 DIQVGTLSKAIGV--VGGYAAGHKELIEYLKNRARPFLF-STAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGL 301 (385)
T ss_pred cEEEEeccHHhhc--CCCEEecCHHHHHHHHHhCccccc-cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3589999963 458899999998888632221222 223567888888999987654 467888888899999988
Q ss_pred HHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc-------CCcceEE--ecCC
Q 011959 385 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-------QFEAGFT--SLAH 455 (474)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------~~~~~~~--~~~~ 455 (474)
+++. ..+ ....+.++.+.+.. ......+++.|+++||++.+. +...+|+ ++.+
T Consensus 302 ~~~g--~~~---~~~~~~~~~~~~~~-------------~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~ 363 (385)
T TIGR01825 302 GKLG--YDT---GGSETPITPVVIGD-------------EKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEH 363 (385)
T ss_pred HHcC--CCC---CCCCCCEEEEEECC-------------HHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCC
Confidence 7752 221 12233444444321 122357889999999998543 2234555 4689
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011959 456 SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~ 473 (474)
+++++++++++|++++++
T Consensus 364 ~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 364 TKDDLDQALDAYEKVGKE 381 (385)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998865
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-31 Score=263.37 Aligned_cols=342 Identities=21% Similarity=0.271 Sum_probs=241.3
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCC-CHHHHHHHHHHHHh-cCCCC------CCCHHHHHHHHHHHhhCC
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA-DDQVLAALGETMKK-GTSFG------APCLLENVLAEMVISAVP 153 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~-~~~~~------~~~~~~~~la~~l~~~~~ 153 (474)
|.++.+++|.++++.+|++||||.++ ++||++ +|++++++.+++.+ +..++ +..+...+|.+.+++++
T Consensus 21 ~~~~~~~~~~~~~~~~g~~~i~~~~~---~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~- 96 (393)
T TIGR01822 21 ERIITSPQGADIRVADGREVLNFCAN---NYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFL- 96 (393)
T ss_pred ccccccCCCceEEecCCceEEEeeCC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh-
Confidence 66788999999999899999999999 899996 99999999999977 33221 22455678888888888
Q ss_pred CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCH
Q 011959 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (474)
Q Consensus 154 ~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~ 233 (474)
+.+.+++++||++|+..++.. ...+++.|++.++.| ......+...+. ..+.++++|+
T Consensus 97 g~~~~ii~~~~~~a~~~~~~~--l~~~gd~vi~~~~~~-~s~~~~~~~~~~-------------------~~~~~~~~d~ 154 (393)
T TIGR01822 97 GTEDTILYASCFDANGGLFET--LLGAEDAIISDALNH-ASIIDGVRLCKA-------------------KRYRYANNDM 154 (393)
T ss_pred CCCcEEEECchHHHHHHHHHH--hCCCCCEEEEecccc-HHHHHHHHhcCC-------------------ceEEeCCCCH
Confidence 456788889999999988773 233455666655444 433333222221 1234456799
Q ss_pred HHHHHHHhcC---CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCC--C
Q 011959 234 SALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGV--T 306 (474)
Q Consensus 234 ~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~--~ 306 (474)
++|++.+++. +.++++|+++++++++|.+.+ +++|.++|++||++||+||+| .|+ .....+..+..++ .
T Consensus 155 ~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~ 230 (393)
T TIGR01822 155 ADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGR 230 (393)
T ss_pred HHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCC
Confidence 9999988752 226788999999999999988 999999999999999999999 455 2211122334444 3
Q ss_pred Ccee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 011959 307 PDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQG 383 (474)
Q Consensus 307 pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~ 383 (474)
+|++ ++||+++ |+|+||+++++++++.+......+.. +.+.++..++++.++|+.++. ++..++++++.+++++.
T Consensus 231 ~di~~~s~sK~l~-g~r~G~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~ 308 (393)
T TIGR01822 231 VDIITGTLGKALG-GASGGFTTARKEVVELLRQRSRPYLF-SNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRER 308 (393)
T ss_pred CeEEEEEChHHhh-CCCcEEEEeCHHHHHHHHHhCcccee-cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 5666 7999987 57999999999999888642222211 223456667778888887754 56778888999999988
Q ss_pred HHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-------CcceEE--ecC
Q 011959 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFT--SLA 454 (474)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~~--~~~ 454 (474)
|++.. ..+ ..+.+.++.+.+. +.....++++.|+++||++.... ...+|+ +..
T Consensus 309 L~~~g--~~~---~~~~~~~~~i~~~-------------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~ 370 (393)
T TIGR01822 309 MEAAG--FDI---KPADHPIIPVMLY-------------DAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAA 370 (393)
T ss_pred HHHcC--CCC---CCCCCCEEEEEeC-------------CHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECCC
Confidence 87642 111 1223444444432 11234678899999999987432 123454 578
Q ss_pred CcHHHHHHHHHHHHHHHhh
Q 011959 455 HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 455 ~t~e~i~~~l~~l~~~~~~ 473 (474)
+|++||++++++|++++++
T Consensus 371 ~t~edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 371 HTEEQLDRAVEAFTRIGRE 389 (393)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 8999999999999998765
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-31 Score=263.81 Aligned_cols=341 Identities=23% Similarity=0.271 Sum_probs=240.0
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHhc-CCC------CCCCHHHHHHHHHHHhhCC
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAVP 153 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~-~~~------~~~~~~~~~la~~l~~~~~ 153 (474)
+..+++++|.++||.+|++||||.++ +++|+ .+|++.+++.+++.+. ..+ .+..+++.+++++++++++
T Consensus 25 ~~~~~~~~~~~~~~~~g~~~i~l~~~---~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g 101 (397)
T PRK06939 25 ERVITSPQGADITVADGKEVINFCAN---NYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLG 101 (397)
T ss_pred cccccCCCCceEEecCCCeEEEeecc---CccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhC
Confidence 34678999999999999999999987 77899 6999999999998762 211 1345778899999999885
Q ss_pred CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCH
Q 011959 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (474)
Q Consensus 154 ~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~ 233 (474)
.. +.+++++|++++..+++. ....++.||+.++.|.+.. ..+...+. +++.++++|+
T Consensus 102 ~~-~~i~~tsG~~a~~~~~~~--l~~~gd~vi~~~~~~~~~~-~~~~~~~~-------------------~~~~~~~~d~ 158 (397)
T PRK06939 102 TE-DAILYSSCFDANGGLFET--LLGKEDAIISDALNHASII-DGVRLCKA-------------------KRYRYANNDM 158 (397)
T ss_pred CC-cEEEEcChHHHHHHHHHH--hCCCCCEEEEEhhhhHHHH-HHHHhcCC-------------------ceEEeCCCCH
Confidence 43 445556679999999874 2344566777666665432 22222221 2344555689
Q ss_pred HHHHHHHhcC---CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc-c-cCCCccccccCC--
Q 011959 234 SALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-R-LAYGGAQEYFGV-- 305 (474)
Q Consensus 234 ~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-r-~g~~~~~~~~g~-- 305 (474)
+++++.+++. ..++++|+++++++++|.+.+ +++|.++|++||++||+||+|. |+ . .+. +....+++
T Consensus 159 ~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~-~~~~~~~~~~ 233 (397)
T PRK06939 159 ADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGR-GTVEHFGVMD 233 (397)
T ss_pred HHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-CHHHHcCCCC
Confidence 9999888742 226788888889999998776 9999999999999999999994 55 2 222 23334455
Q ss_pred CCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 011959 306 TPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQ 382 (474)
Q Consensus 306 ~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~ 382 (474)
.+|++ ++||+++ |+|+||+++++++++.+......+.. +.+.++..++++.++++.+.+ +++.++++++.+++++
T Consensus 234 ~~~i~~~S~sK~~~-g~r~G~v~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~ 311 (397)
T PRK06939 234 RVDIITGTLGKALG-GASGGYTAGRKEVIDWLRQRSRPYLF-SNSLAPAIVAASIKVLELLEESDELRDRLWENARYFRE 311 (397)
T ss_pred CCcEEEEECHHHhC-ccCceEEEeCHHHHHHHHHhCccccc-cCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34666 8999996 45999999999999888642111111 223456667778888887755 4677888888888888
Q ss_pred HHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-------CcceEEe--c
Q 011959 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTS--L 453 (474)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~~~--~ 453 (474)
.|++.. ... ..+.+.++.+.+. +.....++++.|+++||.+.+.. ...+|++ .
T Consensus 312 ~L~~~~--~~~---~~~~~~~~~~~~~-------------~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~ 373 (397)
T PRK06939 312 GMTAAG--FTL---GPGEHPIIPVMLG-------------DAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSA 373 (397)
T ss_pred HHHHcC--CCc---CCCCCCEEEEEEC-------------CHHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECC
Confidence 887652 111 2234555544332 11234678999999999887532 1345654 5
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q 011959 454 AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~~t~e~i~~~l~~l~~~~~~ 473 (474)
.++++++++++++|++++++
T Consensus 374 ~~~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 374 AHTKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999875
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-30 Score=259.88 Aligned_cols=327 Identities=18% Similarity=0.217 Sum_probs=233.9
Q ss_pred CCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHhc-CC------CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TS------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~-~~------~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~ 168 (474)
+|+++++|.++ +++|. +||+|++++.+++++. .. +....+...+|.++++++++ .+..++++||++|+
T Consensus 44 ~~~~~~~~~sn---~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g-~~~~i~~~sG~~a~ 119 (410)
T PRK13392 44 GPRRVTIWCSN---DYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHG-KESALLFTSGYVSN 119 (410)
T ss_pred CCceEEEEECC---CccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhC-CCCEEEECcHHHHH
Confidence 57899999998 99999 5999999999999873 21 11234457899999999996 46677888899999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC-CCe
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEI 247 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~ 247 (474)
+.+++...... ++++|+.+..+|+.....+...|. ++..++++|.+++++.++... +++
T Consensus 120 ~~~i~~l~~~~-~g~~vi~~~~~h~s~~~~~~~~g~-------------------~~~~~~~~d~~~l~~~l~~~~~~~t 179 (410)
T PRK13392 120 DAALSTLGKLL-PGCVILSDALNHASMIEGIRRSGA-------------------EKQVFRHNDLADLEEQLASVDPDRP 179 (410)
T ss_pred HHHHHHHhcCC-CCCEEEEehhhhHHHHHHHHHcCC-------------------eEEEEeCCCHHHHHHHHHhccCCCC
Confidence 99998431111 235666677788765444433332 234456778888888886532 467
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--ccCCCccccccCC--CCcee--ehhhhcCCCc
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV--TPDLT--TLGKIIGGGL 320 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~--~pdi~--t~sK~l~~G~ 320 (474)
++|++++++|++|.+.+ +++|.++|++||++||+||+|+ |+ ..|.. ..++.++ .+|++ ||||++|.
T Consensus 180 ~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g-~~~~~~~~~~~div~~tlsK~~g~-- 252 (410)
T PRK13392 180 KLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGG-IAERDGLMDRIDMIQGTLAKAFGC-- 252 (410)
T ss_pred EEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCc-hhhhccCCCCCcEEEEEChHhhhc--
Confidence 89999999999999998 9999999999999999999996 65 33322 2344444 35666 89999983
Q ss_pred ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee
Q 011959 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (474)
+.||+++++++++.++.....+.+ +.+.+|++++++.++|+.++. ....++++++.+++++.|+++. +.+ .++
T Consensus 253 ~GG~~~~~~~~~~~l~~~~~~~~~-s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~---~~~ 326 (410)
T PRK13392 253 LGGYIAASADLIDFVRSFAPGFIF-TTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNANG--IPV---MPS 326 (410)
T ss_pred ccchhhcCHHHHHHHHHhCcchhc-cCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC--CCC---CCC
Confidence 237888899999977643333333 456678889999999998765 3455667888888888887652 221 134
Q ss_pred eceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccCC-------cceEEe--cCCcHHHHHHHHHHHHH
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-------EAGFTS--LAHSSDDIQHTITAAEK 469 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-------~~~~~~--~~~t~e~i~~~l~~l~~ 469 (474)
.+.++.+.+. +.....++.+.|+ ++||++.+..+ ..+|++ +.+|++|+++++++|++
T Consensus 327 ~~~~~~i~~~-------------~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~ 393 (410)
T PRK13392 327 PSHIVPVMVG-------------DPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVA 393 (410)
T ss_pred CCCEEEEEeC-------------CHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 5555555442 1123457888887 67999987532 345664 57999999999999999
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
++++
T Consensus 394 ~~~~ 397 (410)
T PRK13392 394 IWDR 397 (410)
T ss_pred HHHH
Confidence 8765
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-30 Score=231.51 Aligned_cols=336 Identities=21% Similarity=0.258 Sum_probs=253.1
Q ss_pred CeEEEeeccCEEEEcCC--CEEEeccCChhhccCCC-CCHHHHHHHHHHHHh-cCCC------CCCCHHHHHHHHHHHhh
Q 011959 82 PIVFDSVKGSHMWDIDG--NEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVISA 151 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG--~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~~------~~~~~~~~~la~~l~~~ 151 (474)
-.++.+.+|..+. ++| +++|+|++| ||||. +||+|++|-.+++++ +... .+.......|..+++++
T Consensus 49 erVi~s~q~p~i~-v~G~~k~ilnFcaN---nYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqf 124 (417)
T KOG1359|consen 49 ERVITSRQGPTIQ-VKGSDKKILNFCAN---NYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQF 124 (417)
T ss_pred eeEEeecccceEE-Eeccccceeeeccc---ccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHH
Confidence 3578889999886 666 579999999 99999 699999999999987 3211 13577888999999988
Q ss_pred CCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC
Q 011959 152 VPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (474)
Q Consensus 152 ~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 231 (474)
+ +.|+.++.+|+..||..++. +...+.+-|..|.-.|.+....+.+. .++.+-
T Consensus 125 h-~rED~ilypscfdANag~fe---ail~pedAvfSDeLNhASIIdGirLc-----------------------kry~h~ 177 (417)
T KOG1359|consen 125 H-GREDTILYPSCFDANAGAFE---AILTPEDAVFSDELNHASIIDGIRLC-----------------------KRYRHV 177 (417)
T ss_pred h-CCCceEEeccccccchHHHH---HhcChhhhhhccccccchhhhhhHHH-----------------------hhhccc
Confidence 8 77889999999999999988 44455555666777787543322211 123344
Q ss_pred CHHHHHHHHhc-CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCC--C
Q 011959 232 DVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGV--T 306 (474)
Q Consensus 232 d~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~--~ 306 (474)
|+-+++..+.+ .+-+.++|+.+.++++.|.+.| |++|.+|++|||.+|++||.| ||| .....+..+.+|+ .
T Consensus 178 dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~ 253 (417)
T KOG1359|consen 178 DVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGD 253 (417)
T ss_pred hhHHHHHHHHHhhhheEEEEEecceeccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCc
Confidence 77777765553 2346889999999999999999 999999999999999999999 888 5545677788886 4
Q ss_pred Ccee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 011959 307 PDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQG 383 (474)
Q Consensus 307 pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~ 383 (474)
+|++ |+||++|| ---||..+++.+++.++...+.+.+++ +.+|.....+.++++.+.. .....+.+.+.+++++.
T Consensus 254 vdiinsTLgKAlGg-a~GGyttgp~~li~llrqr~RpylFSn-slppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~ 331 (417)
T KOG1359|consen 254 VDIINSTLGKALGG-ASGGYTTGPKPLISLLRQRSRPYLFSN-SLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREF 331 (417)
T ss_pred ceehhhhhhhhhcC-CCCCCccCChhHHHHHHhcCCceeecC-CCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 6666 89999983 246778999999999987666666654 5555555566667776544 67888889999999988
Q ss_pred HHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcc-------e--EEecC
Q 011959 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------G--FTSLA 454 (474)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-------~--~~~~~ 454 (474)
++..+. .+... ..++.+....|...+..+.+.|+++|+++....++. + .++..
T Consensus 332 me~aGf-----------------tIsg~-~hPI~pv~lGda~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAa 393 (417)
T KOG1359|consen 332 MEAAGF-----------------TISGA-SHPICPVMLGDARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAA 393 (417)
T ss_pred HHhcCc-----------------eecCC-CCCccceecccHHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehh
Confidence 876522 22111 123334445677888899999999999987765543 2 35899
Q ss_pred CcHHHHHHHHHHHHHHHh
Q 011959 455 HSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 455 ~t~e~i~~~l~~l~~~~~ 472 (474)
||+||||++++++.++.+
T Consensus 394 Ht~edid~~i~Af~~vgr 411 (417)
T KOG1359|consen 394 HTEEDIDRLIEAFSEVGR 411 (417)
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999998865
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-30 Score=253.27 Aligned_cols=334 Identities=18% Similarity=0.197 Sum_probs=236.9
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCe-EEEeCCHHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEM-VRFVNSGTEACMG 170 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~-v~~~~sGseA~~~ 170 (474)
.++||+..| .+.-..++.+++++.+++..+. .|+ +..++++.+++++.++++ .++. |++|+|+++|+..
T Consensus 28 ~~vi~l~iG---~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~ 104 (393)
T COG0436 28 EDVIDLSIG---EPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFL 104 (393)
T ss_pred CCEEEeCCC---CCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHH
Confidence 467888888 6655678999999999998763 332 345778888888888865 3444 9999999999999
Q ss_pred HHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCC-CCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE
Q 011959 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (474)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~-~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (474)
++.. ...++++||+.+|.|..+........|..+ ..+.... .++. -|+++|++.++. ++++
T Consensus 105 ~~~a--~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v-~v~l~~~~~~f~------------~d~~~l~~~i~~---ktk~ 166 (393)
T COG0436 105 AFLA--LLNPGDEVLIPDPGYPSYEAAVKLAGGKPV-PVPLDEEENGFK------------PDLEDLEAAITP---KTKA 166 (393)
T ss_pred HHHH--hcCCCCEEEEeCCCCcCHHHHHHhcCCEEE-EEeCCcCccCCc------------CCHHHHHhhcCc---cceE
Confidence 9984 345668899999999876544444434322 2111000 1110 189999999884 6889
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-C-ccccccCC---CCceeehhhhcC-CCcce
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-G-GAQEYFGV---TPDLTTLGKIIG-GGLPV 322 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~-~~~~~~g~---~pdi~t~sK~l~-~G~~i 322 (474)
|+++.++|++|.+.++++ +++|.++|++||++||+||+|.+| ..+. + ...+..+. ..-+-+|||.++ .|||+
T Consensus 167 i~ln~P~NPTGav~~~~~-l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRv 245 (393)
T COG0436 167 IILNSPNNPTGAVYSKEE-LKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRI 245 (393)
T ss_pred EEEeCCCCCcCcCCCHHH-HHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccce
Confidence 999998899998887655 999999999999999999999999 7763 2 22222221 111237999999 89999
Q ss_pred EEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 323 GAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 323 G~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
||++++ +++++.+. ......+++.+.++|.++.++|+.-++ +...+.++++++.+.+.|.++. ++....
T Consensus 246 G~~v~~~~~l~~~~~---~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~---g~~~~~ 319 (393)
T COG0436 246 GWVVGPPEELIAALR---KLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIG---GLSVVK 319 (393)
T ss_pred eEeecChHHHHHHHH---HHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcC---Ceeecc
Confidence 999999 88888776 344566778999999999999985422 2233456666666666666542 133233
Q ss_pred eeecee-EEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC-------CcceEEecCCcHHHHHHHHHHHH
Q 011959 398 GYISGM-FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAE 468 (474)
Q Consensus 398 ~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~-------~~~~~~~~~~t~e~i~~~l~~l~ 468 (474)
...|.| ++..+... ....+|+..|++ .||.+.|+. .+++|+++..+++++++++++++
T Consensus 320 ~p~Ga~Y~~~~i~~~-------------~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl~ 386 (393)
T COG0436 320 PPEGAFYLFPKIPEL-------------LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLA 386 (393)
T ss_pred CCCeeEEEEeecCCC-------------CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHHHHHHH
Confidence 244444 44444321 112577777775 589999862 24689999999999999999999
Q ss_pred HHHhh
Q 011959 469 KVLRQ 473 (474)
Q Consensus 469 ~~~~~ 473 (474)
++++.
T Consensus 387 ~~~~~ 391 (393)
T COG0436 387 RFLAE 391 (393)
T ss_pred HHHHh
Confidence 98865
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=247.76 Aligned_cols=332 Identities=20% Similarity=0.269 Sum_probs=232.4
Q ss_pred EEeeccCEEEEcCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHh-cCCC------CCCCHHHHHHHHHHHhhCCCCC
Q 011959 85 FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVISAVPSIE 156 (474)
Q Consensus 85 ~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~~------~~~~~~~~~la~~l~~~~~~~~ 156 (474)
++++.|.++. .+|++||||.+| +++|+ .+|++++++.+++.+ +..+ .+..+...++++.++++++ .+
T Consensus 3 ~~~~~~~~~~-~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~-~~ 77 (360)
T TIGR00858 3 LDRGPGPEVV-RDGRRLLNFSSN---DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG-TE 77 (360)
T ss_pred cccCCCCeEE-ECCceEEecccC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-CC
Confidence 4688999997 899999999998 78996 789999999999876 2211 1224667888999998885 34
Q ss_pred eEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHH
Q 011959 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 236 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l 236 (474)
..+++++|++++..+++. ...+++.|++ ...+|+.....+...|. ++..++..|++++
T Consensus 78 ~~i~~~~G~~~~~~~l~~--~~~~gd~v~~-~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~~~l 135 (360)
T TIGR00858 78 AALLFSSGYLANVGVISA--LVGKGDLILS-DALNHASLIDGCRLSGA-------------------RVRRYRHNDVEHL 135 (360)
T ss_pred CEEEECchHHHHHHHHHH--hCCCCCEEEE-EccccHHHHHHHHhcCC-------------------ceEEecCCCHHHH
Confidence 566667789998887773 2233445554 45555544444433332 2334455689999
Q ss_pred HHHHhcCC-CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC-C-CccccccCCCCc-----
Q 011959 237 ENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-Y-GGAQEYFGVTPD----- 308 (474)
Q Consensus 237 e~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g-~-~~~~~~~g~~pd----- 308 (474)
++.++++. .++++|+++++++++|.+.+ +++|.++|++||++||+||+|+.+..+ . .....++++.++
T Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 211 (360)
T TIGR00858 136 ERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQ 211 (360)
T ss_pred HHHHHHcccCCCeEEEEeCCccCCCCCcC----HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEE
Confidence 99987643 35788889999888998888 999999999999999999999633221 1 222344555544
Q ss_pred eeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHH
Q 011959 309 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 309 i~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~ 387 (474)
+.++||++++ +.||+++++++++.+......+ ..+.+.++..++++.++++.+.. +...++++++.+++.+.|+++
T Consensus 212 i~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~ 288 (360)
T TIGR00858 212 VGTLSKALGS--YGAYVAGSQALIDYLINRARTL-IFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEAL 288 (360)
T ss_pred EEechhhhhc--cCcEEEcCHHHHHHHHHhCccc-eecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Confidence 4589999985 3489999999988775322211 12334567778888889987654 457788888888898888764
Q ss_pred hhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-------CcceEEec--CCcHH
Q 011959 388 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSL--AHSSD 458 (474)
Q Consensus 388 ~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~~~~--~~t~e 458 (474)
++. ..+..+.++++.+.. .....++.+.|+++||++.+.. ...+|+++ .++++
T Consensus 289 ----~~~-~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~ 350 (360)
T TIGR00858 289 ----GFT-LMPSCTPIVPVIIGD-------------NASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPG 350 (360)
T ss_pred ----CCc-cCCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHH
Confidence 221 123456777777632 1223578899999999997531 23567754 46999
Q ss_pred HHHHHHHHHH
Q 011959 459 DIQHTITAAE 468 (474)
Q Consensus 459 ~i~~~l~~l~ 468 (474)
++++++++|+
T Consensus 351 ~i~~~l~~l~ 360 (360)
T TIGR00858 351 DIDRLAEALK 360 (360)
T ss_pred HHHHHHHhhC
Confidence 9999999873
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=232.72 Aligned_cols=352 Identities=17% Similarity=0.187 Sum_probs=257.1
Q ss_pred ccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHh-cCCC------CCCCHHHH
Q 011959 71 PVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLEN 142 (474)
Q Consensus 71 ~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~~------~~~~~~~~ 142 (474)
.+|.|+.+++..-.+.-++-. -+...+++--++++ +|||+ .||+|.+|+.+.+++ |... .+++....
T Consensus 145 sYRvFk~vNRlA~~fP~A~~~--se~t~k~VtVWCSN---DYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv 219 (570)
T KOG1360|consen 145 SYRVFKNVNRLAKEFPLAHRY--SEATEKKVTVWCSN---DYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHV 219 (570)
T ss_pred hhHHHHHHhHhhhhccchhhc--cccccCceEEEecC---ccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhh
Confidence 468887765532111111110 01112344445777 89999 599999999999988 3322 24577778
Q ss_pred HHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHH-hHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCC
Q 011959 143 VLAEMVISAVPSIEMVRFVNSGTEACMGVLRL-ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGA 221 (474)
Q Consensus 143 ~la~~l~~~~~~~~~v~~~~sGseA~~~al~~-ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~ 221 (474)
+|.+.|++++ ..+..++++|+.-||+..|-. ++.+ ++.+|..|...|.+....+.. .
T Consensus 220 ~LE~eLA~LH-qK~aALlFsSCfVANDstLftLak~l--pgcei~SD~gNHASMI~GIrn-------------------s 277 (570)
T KOG1360|consen 220 RLEAELADLH-QKEAALLFSSCFVANDSTLFTLAKKL--PGCEIFSDEGNHASMIQGIRN-------------------S 277 (570)
T ss_pred hHHHHHHHHh-cCcceeeeeeeeeccchHHHHHHHHC--CCcEEeccccchHHHHHHhhh-------------------c
Confidence 8888888888 677888888999999998873 2222 467788888999865544332 2
Q ss_pred CCceEEccCCCHHHHHHHHhcCC-CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCc
Q 011959 222 TYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGG 298 (474)
Q Consensus 222 ~~~~~~~~~~d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~ 298 (474)
....+.|.|||++.|+++|+..+ ..++.|-+|.++++.|.+.| |++|+++++|||++-.+|||| .|+ .....+
T Consensus 278 ~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcp----leelcDvah~yGAiTFlDEVHAVGlYG~rGaG 353 (570)
T KOG1360|consen 278 RVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCP----LEELCDVAHKYGAITFLDEVHAVGLYGPRGAG 353 (570)
T ss_pred CCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCC----HHHHHHHHHHhCceeeeehhhhhccccCCCCC
Confidence 23467889999999999998754 35677888999999999999 999999999999999999999 677 444455
Q ss_pred cccccCCC--Ccee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHH
Q 011959 299 AQEYFGVT--PDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYE 371 (474)
Q Consensus 299 ~~~~~g~~--pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~ 371 (474)
..++-|+. .||+ |++|+||+ -.||+.++..+++.++...+.+.++| +.+|..++.|+++++++.. ..++.
T Consensus 354 vgerdGvm~kvDiIsGTLgKafGc--VGGYIAat~~LvDmiRSyAaGFIFTT-SLPP~vl~GAleaVr~lk~~eg~~lR~ 430 (570)
T KOG1360|consen 354 VGERDGVMHKVDIISGTLGKAFGC--VGGYIAATRKLVDMIRSYAAGFIFTT-SLPPMVLAGALEAVRILKSEEGRVLRR 430 (570)
T ss_pred ccccCCcchhhhhcccchhhhccc--ccceehhhhhHHHHHHHhcCceEEec-CCChHHHHhHHHHHHHHhhhhhHHHHH
Confidence 66777774 5777 79999996 23566788899999997777777754 8899999999999998875 34566
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccCCcc--
Q 011959 372 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEA-- 448 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~-- 448 (474)
..+++.+++++.|.+++ +|++ +..+.+.+.+..+......+.+.|+ ++||++....++.
T Consensus 431 ~hqrnv~~~kq~l~~~G--iPVi----------------~~pSHIiPv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV~ 492 (570)
T KOG1360|consen 431 QHQRNVKYVKQLLMELG--IPVI----------------PNPSHIIPVRVGDAALAKQASDILISKHNIYVQAINYPTVA 492 (570)
T ss_pred HHHHHHHHHHHHHHHcC--Cccc----------------CCCcceeeeeccCHHHHHHHHHHHHHhcCeEEEeccCCccc
Confidence 66777788888777652 2221 1123334444556677778888887 6799998766554
Q ss_pred -----eEE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 449 -----GFT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 449 -----~~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+|+ ...||++.++.+++.+..+++++
T Consensus 493 rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 493 RGTERLRIAPTPHHTPQMMNILVNALLDVWNEV 525 (570)
T ss_pred ccceeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 355 46789999999999999998763
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=244.01 Aligned_cols=364 Identities=18% Similarity=0.216 Sum_probs=240.4
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEE----EEcCCCEEEeccCChhhccCCCC--CHHHHHHHHH
Q 011959 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHM----WDIDGNEYIDYVGSWGPAIIGHA--DDQVLAALGE 126 (474)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~----~d~dG~~~iD~~~~~~~~~lG~~--~p~v~~a~~~ 126 (474)
.+.++.|.++.+...+.+.. +.+--+++|....+- ...++++.|||.++ +|||.+ ++.+.+++.+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~---~YLgl~~~~~~~~~~~~~ 126 (489)
T PLN02483 56 IRRLYLRIQDCFNRPIASAP------DAWFDVVERVSNDNNKTLKRTTKTRRCLNLGSY---NYLGFAAADEYCTPRVIE 126 (489)
T ss_pred HHHhhhhcccccCCCCCCCC------CCeEEEEEeecCCCCceEEecCCCceEEEeecC---CccCcCCCCHHHHHHHHH
Confidence 45556666665554433210 111124555444331 22467899999999 999995 5778888888
Q ss_pred HHHh-cCCC------CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHH
Q 011959 127 TMKK-GTSF------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199 (474)
Q Consensus 127 ~~~~-~~~~------~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~ 199 (474)
++++ +... .++.....+|.+.++++++ .+..+++++|+.++..++.. +.++++.|+.+...|......+
T Consensus 127 ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g-~~~ai~~~~G~~an~~~i~a---l~~~Gd~Vi~d~~~h~s~~~~~ 202 (489)
T PLN02483 127 SLKKYSASTCSSRVDGGTTKLHRELEELVARFVG-KPAAIVFGMGYATNSTIIPA---LIGKGGLIISDSLNHNSIVNGA 202 (489)
T ss_pred HHHHhCCCCCccccccCCcHHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHH---hCCCCCEEEEcchhhHHHHHHH
Confidence 8776 3211 2357788899999999885 45566667799999887773 4444444445555555443333
Q ss_pred HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC----------CCCeEEEEEccccCCCCcccCCHHHH
Q 011959 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN----------KGEIAAIILEPVVGNSGFIAPKPDFL 269 (474)
Q Consensus 200 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~----------~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (474)
...| .++..++++|++++++.+++. +....+|++|++.++.|.+.+ +
T Consensus 203 ~~~G-------------------a~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~----l 259 (489)
T PLN02483 203 RGSG-------------------ATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCK----L 259 (489)
T ss_pred HHcC-------------------CeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccC----H
Confidence 3322 246677888999998877631 112358888999999999998 9
Q ss_pred HHHHHHHHHhCCEEEEecccc-Cc--ccCCCccccccCCCC---cee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCc
Q 011959 270 NAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVTP---DLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM 341 (474)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~~p---di~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~ 341 (474)
++|.++|++||++||+||+|+ |. ++| .+..+++++.| |++ ||||++|+ +.||+++++++++.+......
T Consensus 260 ~~I~~la~~~~~~livDEa~s~g~~G~~G-~g~~~~~~v~~~~~dI~~~SfSKs~g~--~GG~i~~~~~li~~l~~~~~~ 336 (489)
T PLN02483 260 PEIVAVCKKYKAYVYLDEAHSIGAVGKTG-RGVCELLGVDPADVDIMMGTFTKSFGS--CGGYIAGSKELIQYLKRTCPA 336 (489)
T ss_pred HHHHHHHHHcCCEEEEECcCccCccCCCC-CchHHhcCCCcccCcEEEEecchhccc--CceEEEcCHHHHHHHHHhCcc
Confidence 999999999999999999995 33 233 33456677654 565 89999984 348999999999998742211
Q ss_pred ccccCCCCChHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCc
Q 011959 342 YQAGTLSGNPLAMTAGIHTLKRLKEP-------GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY 414 (474)
Q Consensus 342 ~~~~t~~~~~~~~aaa~aal~~~~~~-------~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~ 414 (474)
..+ ..+.+|..++++.++|+.+..+ +.+++++++.+++++.|+++ ++.......+.++++.+..
T Consensus 337 ~~~-~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~----G~~v~~~~~sp~~~l~l~~---- 407 (489)
T PLN02483 337 HLY-ATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM----GFEVLGDNDSPVMPIMLYN---- 407 (489)
T ss_pred ccc-cCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC----CCcccCCCCCCEEEEEECC----
Confidence 111 2234667777788888876421 34567788888888888775 2211111223444554421
Q ss_pred CcccccccchHHHHHHHHHHHHCCeEecccCC-------cceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 415 NFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
......+.+.|+++||.+.+.++ ..+|+ +..+|+|+|++++++|+++++.
T Consensus 408 ---------~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~ 466 (489)
T PLN02483 408 ---------PAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDL 466 (489)
T ss_pred ---------HHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 12345788999999999986543 23454 5678999999999999998764
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=222.03 Aligned_cols=348 Identities=15% Similarity=0.128 Sum_probs=249.3
Q ss_pred EeeccCEEEEcCC--CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCCCC-CHHHHHHHHHHHhhCC---CCCeE
Q 011959 86 DSVKGSHMWDIDG--NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGAP-CLLENVLAEMVISAVP---SIEMV 158 (474)
Q Consensus 86 ~~~~G~~~~d~dG--~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~-~~~~~~la~~l~~~~~---~~~~v 158 (474)
.++..+..||..+ ..+| -.|-+...-..+|+|++|+++.+++|. +|.+. .++..++.++..+++. ..+.+
T Consensus 10 r~~t~s~KWd~~~g~~Dvl---PmWVADMDf~~pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i 86 (388)
T COG1168 10 RLGTNSLKWDAHPGNEDVL---PMWVADMDFPTPPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWI 86 (388)
T ss_pred hcCCCceeccccCCCCCcc---eeeeecccCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceE
Confidence 3566777888765 3343 333335555589999999999999974 33333 4478899999999886 47899
Q ss_pred EEeCCHHHHHHHHHHHhHhhcC-CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHH
Q 011959 159 RFVNSGTEACMGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~-~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le 237 (474)
+|+++.--++..+|+ .+|+ ++.|++..|.|+. ...+....|..+...++.... ..+.+ |+++||
T Consensus 87 ~~~p~VVpgi~~~I~---~~T~~gd~Vvi~tPvY~P-F~~~i~~n~R~~i~~pL~~~~--------~~y~i---D~~~LE 151 (388)
T COG1168 87 VFVPGVVPGISLAIR---ALTKPGDGVVIQTPVYPP-FYNAIKLNGRKVIENPLVEDD--------GRYEI---DFDALE 151 (388)
T ss_pred EEcCcchHhHHHHHH---HhCcCCCeeEecCCCchH-HHHHHhhcCcEEEeccccccC--------CcEEe---cHHHHH
Confidence 999999999999999 7776 5778888888877 344555566655443332211 12333 899999
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC-CCccccccCCCCc----ee-
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGGAQEYFGVTPD----LT- 310 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~~~~~~~~g~~pd----i~- 310 (474)
+.+.+. +++++|++.++|++|.+...+| |.+|.+||.+||+++|+||+|..+ ..| ++..+. .+.++ .+
T Consensus 152 ~~~~~~--~vkl~iLCnPHNP~Grvwt~ee-L~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a--~ls~~~a~~~it 226 (388)
T COG1168 152 KAFVDE--RVKLFILCNPHNPTGRVWTKEE-LRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFA--SLSERFADNSIT 226 (388)
T ss_pred HHHhcC--CccEEEEeCCCCCCCccccHHH-HHHHHHHHHHcCCEEEeecccccccccCCCccchh--hcChhhhcceEE
Confidence 999853 6778888888888998887666 999999999999999999999999 666 343332 22222 22
Q ss_pred --ehhhhcC-CCcceEEEE-ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHH
Q 011959 311 --TLGKIIG-GGLPVGAYG-GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGI 384 (474)
Q Consensus 311 --t~sK~l~-~G~~iG~~~-~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L 384 (474)
+-||+|+ +|+.+++++ .++++.+.+.+ ++...+..+.|.+++.|..++++..+. +++.+.++.+.+++.+.|
T Consensus 227 ~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~--~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l 304 (388)
T COG1168 227 LTSASKTFNLAGLKCAYIIISNRELRAKFLK--RLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFL 304 (388)
T ss_pred EeeccccccchhhhheeEEecCHHHHHHHHH--HHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999 899999985 45566455442 222334557799999999999987766 788899999999999999
Q ss_pred HHHhhhcCCeeEEeeece-eEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecc------cCCcceEEecCCc
Q 011959 385 IDAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAP------SQFEAGFTSLAHS 456 (474)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~------~~~~~~~~~~~~t 456 (474)
++.. |-+......|. ++|+++..-... + .++.+.|+++ +|.+.+ .+.+.+|++++.+
T Consensus 305 ~~~~---P~v~v~~p~gTYL~WLD~r~l~l~--------d----~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~acp 369 (388)
T COG1168 305 NKHL---PGVKVTEPQGTYLAWLDCRELGLD--------D----SELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACP 369 (388)
T ss_pred HhhC---CCcEEecCCCceeeeeeccccCCC--------h----HHHHHHHHHhhcEeccCCCccCcCCCceEEEecCCC
Confidence 8764 33333445555 566677542211 1 3455566644 555544 4556779999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011959 457 SDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 457 ~e~i~~~l~~l~~~~~~ 473 (474)
++-+++++++|..+++.
T Consensus 370 r~~L~eal~ri~~al~~ 386 (388)
T COG1168 370 RAILEEALERLKRALKK 386 (388)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998875
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=236.22 Aligned_cols=337 Identities=17% Similarity=0.146 Sum_probs=224.0
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRL 174 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ 174 (474)
+++.+||+..+. +.+ ..+|.+.+++.+.+..+....+ ......+|.+.++++++ ..+++++++|+++|+..+++.
T Consensus 26 ~~~~~i~l~~~~--~~~-~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~ 102 (380)
T PRK06225 26 KDKEMIWMGQNT--NHL-GPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRA 102 (380)
T ss_pred hcCCeEEccCCC--CCC-CCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHH
Confidence 345678887663 444 4789999999999876422222 23345678888888776 567899999999999999984
Q ss_pred hHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC-CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011959 175 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (474)
Q Consensus 175 ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (474)
. ...++.|++.+++|+.. ...+...|..+..++..... +. .-|++++++.+.. ++++|++.
T Consensus 103 ~--~~~gd~vl~~~p~y~~~-~~~~~~~g~~~~~v~~~~~~~~~------------~~d~~~l~~~~~~---~~~~v~l~ 164 (380)
T PRK06225 103 F--LSPGDNAVTPDPGYLII-DNFASRFGAEVIEVPIYSEECNY------------KLTPELVKENMDE---NTRLIYLI 164 (380)
T ss_pred h--cCCCCEEEEcCCCCcch-HHHHHHhCceEEeeccccccCCc------------cCCHHHHHhhcCC---CceEEEEe
Confidence 2 23456788889888753 33444445433322211000 00 0178888887763 46666655
Q ss_pred cccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccc-cCCCCceeehhhhcC-CCcceEEEEecHHH
Q 011959 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY-FGVTPDLTTLGKIIG-GGLPVGAYGGRRDI 331 (474)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~-~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i 331 (474)
.++|++|.+.+.++ +++|.++|++||+++|+||+|.+|..+....... .....++.+|||.+| +|+|+||+++++++
T Consensus 165 ~p~NptG~~~~~~~-~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l 243 (380)
T PRK06225 165 DPLNPLGSSYTEEE-IKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATPDL 243 (380)
T ss_pred CCCCCCCcCCCHHH-HHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCccceeEEEecCHHH
Confidence 55667888776554 9999999999999999999998772222111111 011223558999998 79999999999999
Q ss_pred HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc-CC-eeEEeeeceeEEEEEe
Q 011959 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GH-AICGGYISGMFGFFFT 409 (474)
Q Consensus 332 ~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~-~~~v~~~g~~~~i~~~ 409 (474)
++.+.. . ...+++.|.+++.++.++|+.. +++.+++++..+..++.+.+.+.++ +. ....+..|.++++.+.
T Consensus 244 ~~~~~~---~-~~~~~~~~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~ 317 (380)
T PRK06225 244 IEVVKS---I-VINDLGTNVIAQEAAIAGLKVK--DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDIS 317 (380)
T ss_pred HHHHHH---H-HhcccCCCHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcc
Confidence 988763 1 2246778888988888887642 3444555444444344444433332 22 1223556788888774
Q ss_pred cCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-------CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.... ...++.+.|.++||.+.++. ...+|+++..++|++++++++|++++++
T Consensus 318 ~~~~------------~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~ 376 (380)
T PRK06225 318 EAGI------------DPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVVET 376 (380)
T ss_pred cccC------------CHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 3211 12568888889999998752 2367888888999999999999999875
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=238.56 Aligned_cols=320 Identities=15% Similarity=0.150 Sum_probs=215.9
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCCCC----CHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGAP----CLLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 170 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~~~----~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~ 170 (474)
..+|+..|. ++++ .+|.+++++.+.+... ....|+ ..+++.+++++.+.++ ..++|++|+|+++++..
T Consensus 27 ~~i~l~~~~--~~~~-~~~~~~~al~~~l~~~~~~~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~ 103 (368)
T PRK03317 27 VPVRLNTNE--NPYP-PSPALVADIAEAVAEAAAGLNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQ 103 (368)
T ss_pred ceeEecCCC--CCCC-CCHHHHHHHHHHHhhhhhhhccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHH
Confidence 368888773 3444 7899999999887531 112233 2456666666655543 56899999999999999
Q ss_pred HHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEE
Q 011959 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (474)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (474)
+++. ....++.|++.+++|+++...+ ...|..+.. .+...+. --|++++++.++++ ++++|
T Consensus 104 ~~~~--~~~~gd~v~v~~P~y~~~~~~~-~~~g~~~~~--~~~~~~~------------~~d~~~l~~~~~~~--~~~~i 164 (368)
T PRK03317 104 LLQA--FGGPGRTALGFVPSYSMHPIIA-RGTHTEWVE--GPRAADF------------TLDVDAAVAAIAEH--RPDVV 164 (368)
T ss_pred HHHH--hcCCCCEEEEeCCChHHHHHHH-HhcCCeeEE--cccCCCC------------CCCHHHHHHHHhcc--CCCEE
Confidence 9984 2244577888999998754332 233332222 1111110 01789999988753 34566
Q ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcC-CCcceEEE
Q 011959 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAY 325 (474)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~ 325 (474)
+++.++|++|.+.+ .+++.+||+.++++||+||+|.+| +.+.....+..+..|+++ ||||++| +|+|+||+
T Consensus 165 ~l~~p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~ 240 (368)
T PRK03317 165 FLTSPNNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYL 240 (368)
T ss_pred EEeCCCCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhh
Confidence 66667888999999 777888888889999999999988 555444444445556766 8999998 79999999
Q ss_pred EecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeE
Q 011959 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 404 (474)
Q Consensus 326 ~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~ 404 (474)
++++++++.+.... .+++.++++++++.++|+..+. .+..++++++.+.+.+.|++ +++. ...+.|.++
T Consensus 241 ~~~~~~~~~l~~~~-----~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~-~~~~~~~~~ 310 (368)
T PRK03317 241 AAAPAVVDALRLVR-----LPYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLRE----LGLR-VAPSDANFV 310 (368)
T ss_pred hCCHHHHHHHHhcC-----CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH----CCCE-eCCCCCcEE
Confidence 99999999887321 3677889999999998874322 22233344444444444443 3432 233445554
Q ss_pred EE-EEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-cceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 405 GF-FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 405 ~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
.+ .+. ....+.+.|+++||++.+.+. +++|+++. +.+++++++++|+++++
T Consensus 311 ~~~~~~----------------~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~-~~~~~~~~~~~l~~~~~ 363 (368)
T PRK03317 311 LFGRFA----------------DRHAVWQGLLDRGVLIRDVGIPGWLRVTIG-TPEENDAFLAALAEVLA 363 (368)
T ss_pred EEeccC----------------CHHHHHHHHHHCCEEEEeCCCCCeEEEecC-CHHHHHHHHHHHHHHHH
Confidence 43 221 125688899999999988654 46788765 77899999999998875
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=236.00 Aligned_cols=333 Identities=14% Similarity=0.091 Sum_probs=220.9
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SI-EMVRFVNSGTEACMGV 171 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~---~~~~~~~~la~~l~~~~~---~~-~~v~~~~sGseA~~~a 171 (474)
..|+|..|. ..++ .++.+.+++.+.+... ..|+ +..+++.++++++.+.++ .. ++|++++|+++|+..+
T Consensus 21 ~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~ 97 (378)
T PRK07682 21 GVISLGVGE--PDFV-TPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVA 97 (378)
T ss_pred CeEEeCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHH
Confidence 367777764 2344 4677889888887653 2232 345778888888887643 24 4799999999999999
Q ss_pred HHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEE
Q 011959 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (474)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (474)
++. ...+++.|++.+++|+.+.. .....|..+..++....... .-|++++++.+.. ++++++
T Consensus 98 ~~~--l~~~gd~vl~~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~~~~---~~~~v~ 159 (378)
T PRK07682 98 MRA--IINPGDEVLIVEPSFVSYAP-LVTLAGGVPVPVATTLENEF------------KVQPAQIEAAITA---KTKAIL 159 (378)
T ss_pred HHH--hCCCCCEEEEeCCCchhhHH-HHHHcCCEEEEeecCCccCC------------CCCHHHHHhhcCc---ccEEEE
Confidence 884 23456889999999986433 33333433222111100000 0178999988763 466666
Q ss_pred EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-ccccCCCCc---eeehhhhcC-CCcceEEE
Q 011959 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFGVTPD---LTTLGKIIG-GGLPVGAY 325 (474)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~g~~pd---i~t~sK~l~-~G~~iG~~ 325 (474)
++.++|++|.+.+.++ +++|.++|++|+++||+||+|.+| ..+.... ....+..+. +.+|||.++ +|+|+||+
T Consensus 160 ~~~p~NPtG~~~s~~~-~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~ 238 (378)
T PRK07682 160 LCSPNNPTGAVLNKSE-LEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFI 238 (378)
T ss_pred EECCCCCcCcCcCHHH-HHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhh
Confidence 6656788888776554 999999999999999999999988 5443211 122222223 337999999 89999999
Q ss_pred EecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeecee
Q 011959 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403 (474)
Q Consensus 326 ~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~ 403 (474)
++++++++.+.. .....+++.+++++.++.++|+.... ....+.++++.+.+.+.|++. ++....+..|.+
T Consensus 239 ~~~~~~i~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~p~g~~~ 311 (378)
T PRK07682 239 AAPVYFSEAMLK---IHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI----GLTCHVPGGAFY 311 (378)
T ss_pred hcCHHHHHHHHH---HHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC----CCccCCCCeeEE
Confidence 999999998863 22334566788899988888863211 233445556666666666553 332222334455
Q ss_pred EEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+|+.+..... ...++.+.++ ++||.+.|+. ..++|+++..+++++++++++|++++++
T Consensus 312 ~~~~~~~~~~------------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~ 376 (378)
T PRK07682 312 AFPSISSTGL------------SSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVEN 376 (378)
T ss_pred EEEeccCCCC------------CHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 5555532110 1256777776 6899998862 3468999888999999999999999875
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=233.52 Aligned_cols=333 Identities=17% Similarity=0.136 Sum_probs=223.8
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGV 171 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~---~~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~~~a 171 (474)
..|||..|. +--..++.+.+++.+.+++. ..|+ +..++++.+++++.+.++ +.+ +|++|+|+++|+..+
T Consensus 55 ~~i~l~~G~---P~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~ 131 (413)
T PLN00175 55 GAINLGQGF---PNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAAT 131 (413)
T ss_pred CeEecCCCC---CCCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHH
Confidence 578888884 32224788999999888763 2333 234678888888877654 344 699999999999998
Q ss_pred HHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEE
Q 011959 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (474)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (474)
++. ....++.|++.+++|..+. ..+...|..+..++.... +. .-|++.|++.+.. ++++|+
T Consensus 132 ~~~--l~~~gd~Vlv~~P~y~~~~-~~~~~~g~~~~~v~~~~~-~~------------~~~~~~l~~~~~~---~~k~i~ 192 (413)
T PLN00175 132 ILG--LINPGDEVILFAPFYDSYE-ATLSMAGAKIKTVTLRPP-DF------------AVPEDELKAAFTS---KTRAIL 192 (413)
T ss_pred HHH--hCCCCCEEEEeCCCchhHH-HHHHHcCCEEEEEECCcc-cC------------CCCHHHHHHhcCc---CceEEE
Confidence 884 2355688999998886643 333444443322211100 00 0178899888863 567788
Q ss_pred EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-ccccCCCCce---eehhhhcC-CCcceEEE
Q 011959 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFGVTPDL---TTLGKIIG-GGLPVGAY 325 (474)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~g~~pdi---~t~sK~l~-~G~~iG~~ 325 (474)
+++++|++|.+.+.++ +++|.++|++||++||+||+|..| ..+.... .+..+..+.+ .+|||.++ +|||+||+
T Consensus 193 i~~p~NPtG~~~s~~~-l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~ 271 (413)
T PLN00175 193 INTPHNPTGKMFTREE-LELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWA 271 (413)
T ss_pred ecCCCCCCCcCCCHHH-HHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeee
Confidence 8877888998876554 999999999999999999999887 4332211 1222222233 37999999 89999999
Q ss_pred EecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeecee
Q 011959 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403 (474)
Q Consensus 326 ~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~ 403 (474)
++++++++.+.. .....+++.+++.+.++.++|+..+. ++..+.++++.+.+.+.|++ +++....+..|.+
T Consensus 272 v~~~~l~~~l~~---~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~p~g~~f 344 (413)
T PLN00175 272 IAPPHLTWGVRQ---AHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKE----VGFKVYPSSGTYF 344 (413)
T ss_pred EeCHHHHHHHHH---HHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH----CCCeecCCCeeEE
Confidence 999999988863 23334678889999999888863211 23444555555666665554 3433323334555
Q ss_pred EEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC---------CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ---------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~---------~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+++.+..... ....++++.|+ ++||.+.|+. .+.+|+++..+++++++++++|.+++++
T Consensus 345 ~~~~~~~~~~-----------~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~~~rL~~~~~~ 413 (413)
T PLN00175 345 VMVDHTPFGF-----------ENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMKTKLKR 413 (413)
T ss_pred EEEeccccCC-----------CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHhC
Confidence 6666521110 01256778776 5699998862 2357888888999999999999998763
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=234.72 Aligned_cols=336 Identities=15% Similarity=0.121 Sum_probs=218.3
Q ss_pred EEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHH
Q 011959 94 WDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMG 170 (474)
Q Consensus 94 ~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~ 170 (474)
++..|..++++..+ .+.-..++.+ +++.+++.+. ..|+. .....+|.+.+++++. .+++|++|+|+++|+..
T Consensus 21 ~~~~~~~~~~~~~~---e~~~~~~~~~-~~~~~~~~~~~~~Y~~-~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~ 95 (373)
T PRK07324 21 YDIAESCIDSLTLE---ELLALAGKNP-EAFYQELGQKKLTYGW-IEGSPEFKEAVASLYQNVKPENILQTNGATGANFL 95 (373)
T ss_pred cccccCCCCCCcHH---HHHhccCcch-HHHHHHHhcCCccCCC-CCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHH
Confidence 55666667777666 4444456667 8888877763 33332 2223455555555443 46899999999999999
Q ss_pred HHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEE
Q 011959 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (474)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (474)
++.. ....+++|++..++|.... ......|..+..++.....++ ..|++++++.+.. ++++|
T Consensus 96 ~~~~--l~~~gd~Vl~~~P~y~~~~-~~~~~~g~~v~~v~~~~~~~~------------~~d~~~l~~~~~~---~~kli 157 (373)
T PRK07324 96 VLYA--LVEPGDHVISVYPTYQQLY-DIPESLGAEVDYWQLKEENGW------------LPDLDELRRLVRP---NTKLI 157 (373)
T ss_pred HHHH--hCCCCCEEEEcCCCchhHH-HHHHHcCCEEEEEecccccCC------------CCCHHHHHHhCCC---CCcEE
Confidence 9984 2345678888888886643 333334433322111111111 0178888887753 56788
Q ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCc---eeehhhhcC-CCcceEEE
Q 011959 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD---LTTLGKIIG-GGLPVGAY 325 (474)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pd---i~t~sK~l~-~G~~iG~~ 325 (474)
+++.++|++|.+.+.++ +++|.++|++||++||+||+|.++ ..+... ......++ +.+|||.++ +|+|+||+
T Consensus 158 ~i~~p~NPtG~~~~~~~-l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~--s~~~~~~~~I~~~s~SK~~~~~G~RiG~i 234 (373)
T PRK07324 158 CINNANNPTGALMDRAY-LEEIVEIARSVDAYVLSDEVYRPLDEDGSTP--SIADLYEKGISTNSMSKTYSLPGIRVGWI 234 (373)
T ss_pred EEeCCCCCCCCCCCHHH-HHHHHHHHHHCCCEEEEEccccccccCCCCC--ChhhccCCEEEEecchhhcCCccceeEEE
Confidence 88877888998887555 999999999999999999999888 433211 11122223 337999999 89999999
Q ss_pred EecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeec-eeE
Q 011959 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS-GMF 404 (474)
Q Consensus 326 ~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g-~~~ 404 (474)
++++++++.+.. .....+++.+.+++.++..+|+.. +.+.++.++..+..++.|.+.+.+++....+.+.| .++
T Consensus 235 ~~~~~li~~~~~---~~~~~~~~~~~~~q~~a~~~l~~~--~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~ 309 (373)
T PRK07324 235 AANEEVIDILRK---YRDYTMICAGVFDDMLASLALEHR--DAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTS 309 (373)
T ss_pred ecCHHHHHHHHH---HhCcEEecCChHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEE
Confidence 999999988873 334446677888888888877522 23334433333333344444444443333344444 445
Q ss_pred EEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++.+... ....++++.|+ ++||.+.|+. .+++|+++..+++.+++++++|.+++++
T Consensus 310 ~i~~~~~-------------~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~~~~~l~~~l~rl~~~l~~ 370 (373)
T PRK07324 310 FVKLDVD-------------MPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEFLRE 370 (373)
T ss_pred EEEeCCC-------------CCHHHHHHHHHHhcCEEEECccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 5555321 01246777765 6799999974 2467899888999999999999998865
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=231.70 Aligned_cols=330 Identities=12% Similarity=0.096 Sum_probs=218.6
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCC----CCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA----PCLLENVLAEMVISAVP---SI-EMVRFVNSGTEACM 169 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~----~~~~~~~la~~l~~~~~---~~-~~v~~~~sGseA~~ 169 (474)
|..++||..|. ..++ .++.+.+++.+.+.....+++ ..++++.+++++.+.++ .. ++|++|+|+++++.
T Consensus 31 ~~~~i~l~~g~--p~~~-~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~ 107 (399)
T PRK07681 31 GHKMIDLSIGN--PDMP-PADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLV 107 (399)
T ss_pred CCCeEEeCCCC--CCCC-CCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHH
Confidence 55678888773 2233 578899998887765333333 34677788888876543 45 78999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (474)
.+++. ....++.|++.+++|.++... +...|..+..++.....++ . -|++++++.+.. ++++
T Consensus 108 ~~~~~--~~~~Gd~Vlv~~P~y~~~~~~-~~~~G~~~~~v~~~~~~~~---------~---~d~~~l~~~~~~---~~k~ 169 (399)
T PRK07681 108 HLPMV--YANPGDIILVPDPGYTAYETG-IQMAGATSYYMPLKKENDF---------L---PDLELIPEEIAD---KAKM 169 (399)
T ss_pred HHHHH--hCCCCCEEEECCCCccchHHH-HHhcCCEEEEEecCCCCCC---------c---CCHHHHHHhccc---cceE
Confidence 98874 234567889889999875443 3344443332221111111 0 178888877752 5677
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-c-ccccCCC---CceeehhhhcC-CCcce
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-A-QEYFGVT---PDLTTLGKIIG-GGLPV 322 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~-~~~~g~~---pdi~t~sK~l~-~G~~i 322 (474)
|+++.++|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+... . .+..+.. ..+.+|||.++ +|+|+
T Consensus 170 v~l~~P~NPTG~~~s~~~-~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi 248 (399)
T PRK07681 170 MILNFPGNPVPAMAHEDF-FKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRI 248 (399)
T ss_pred EEEeCCCCCcCcCCCHHH-HHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCcccee
Confidence 777755788998887666 999999999999999999999888 443211 1 1111111 12338999998 89999
Q ss_pred EEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeee
Q 011959 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (474)
Q Consensus 323 G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (474)
||+++++++++.+.. ......++.+.+.+.++.++|+...+ +...+.++++.+.+.+.|++ +++....+..
T Consensus 249 G~~i~~~~l~~~~~~---~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~p~~ 321 (399)
T PRK07681 249 GYMIGNEEIVRALTQ---FKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRT----FGWNVDKPAG 321 (399)
T ss_pred EEEecCHHHHHHHHH---HHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----CCCcccCCCe
Confidence 999999999988863 22233567788888888888753211 12233344444444444443 4433223445
Q ss_pred ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC------CcceEEecCCcHHHHHHHHHHHHH
Q 011959 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
|.++|+.+... ....++.+.+++ +||.+.|+. .+++|+++..+++++++++++|.+
T Consensus 322 g~f~~~~l~~~-------------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 322 SMFVWAEIPKG-------------WTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRN 384 (399)
T ss_pred eeEEEEECCCC-------------CCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 77888877421 112567788877 899998862 236789888899999999999987
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=235.85 Aligned_cols=324 Identities=13% Similarity=0.110 Sum_probs=213.1
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~---~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar 176 (474)
..+||..| ++.....|.+.+++.+.......|+. ..+++..+++++....+..++|++|+|+++|+..+++.
T Consensus 86 ~~i~L~~g---~p~~~~~p~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~-- 160 (431)
T PRK15481 86 PLHDLAGG---NPDPQRLPDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCA-- 160 (431)
T ss_pred hhhhhhcC---CCChhHhHHHHHHHHHhhhhhhhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHH--
Confidence 45676666 33332346677777775544333432 24555666666554333346899999999999999984
Q ss_pred hhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcc-c
Q 011959 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP-V 255 (474)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep-~ 255 (474)
....++.|++.+|+|.++. ..+...|..+..++.. ..++ |++.|++.++. +++++++.| +
T Consensus 161 l~~pgd~Vlv~~P~y~~~~-~~~~~~g~~~~~v~~~-~~g~--------------~~~~l~~~~~~---~~k~i~~~p~p 221 (431)
T PRK15481 161 HLLPGDSVAVEDPCFLSSI-NMLRYAGFSASPVSVD-AEGM--------------QPEKLERALAQ---GARAVILTPRA 221 (431)
T ss_pred hCCCCCEEEEeCCCcHHHH-HHHHHcCCeEEeeccC-CCCC--------------CHHHHHHHHhc---CCCEEEECCCC
Confidence 2344678899999997753 3334445433332221 1121 78999998864 466777774 5
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHh-CCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcCCCcceEEEEecHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKEN-GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIGGGLPVGAYGGRRD 330 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~~G~~iG~~~~~~~ 330 (474)
+|++|.+.+.++ +++|.++|++| +++||+||+|..| ..+....... ..+.++ ||||.+++|+|+||++++++
T Consensus 222 ~NPTG~~~s~~~-~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~--~~~~vi~~~SfSK~~~~GlRiG~~i~~~~ 298 (431)
T PRK15481 222 HNPTGCSLSARR-AAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQ--TTQRWALIRSVSKALGPDLRLAFVASDSA 298 (431)
T ss_pred CCCCCccCCHHH-HHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcC--CCCCEEEEeeeccccCCCceeEEEeCCHH
Confidence 667888887555 99999999999 9999999999887 4332111111 123333 79999999999999999999
Q ss_pred HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEE
Q 011959 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (474)
Q Consensus 331 i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (474)
+++.+.. .....+++.|.+++.++.++|+.-.- ....+.++++.+.+.+.|++ +++....+..|+++|+
T Consensus 299 ~~~~~~~---~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~----~~~~~~~p~gg~f~~~ 371 (431)
T PRK15481 299 TSARLRL---RLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQ----YGIAIPSPGDGLNLWL 371 (431)
T ss_pred HHHHHHH---HHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH----cCCccccCCCeEEEEE
Confidence 9888862 22223456788999999888863110 12233344444444444443 3443334667888888
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-------cceEEecC-CcHHHHHHHHHHHHHHHh
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLA-HSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~~~~~-~t~e~i~~~l~~l~~~~~ 472 (474)
.+..+ ..++.+.|.++||.+.|+.. +++|+++. .+++++++++++|.+++.
T Consensus 372 ~l~~~---------------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 372 PLDTD---------------SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN 430 (431)
T ss_pred ECCCC---------------HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 77421 24677888899999998631 24788766 479999999999999875
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-26 Score=228.15 Aligned_cols=317 Identities=18% Similarity=0.173 Sum_probs=218.7
Q ss_pred CCEEEeccCChhhccCCC-CCHHHHHHHHHHHHhc--------CCCC------CCCHHHHHHHHHHHhhCCCCCeEEEeC
Q 011959 98 GNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG--------TSFG------APCLLENVLAEMVISAVPSIEMVRFVN 162 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~--------~~~~------~~~~~~~~la~~l~~~~~~~~~v~~~~ 162 (474)
..+++||.++ +|||+ .+|.+.+++.+++.+. .+.+ +..+...++.+.++++++ .+.+++++
T Consensus 3 ~~~~~~~~s~---~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~-~~~~l~~~ 78 (370)
T PRK05937 3 ESLSIDFVTN---DFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHG-APEAFIVP 78 (370)
T ss_pred CCceEEeECC---CccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhC-CCeEEEEC
Confidence 3468999999 99999 4999999999988763 2211 145678899999999884 46778899
Q ss_pred CHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhc
Q 011959 163 SGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (474)
Q Consensus 163 sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (474)
||+.|+...+. .+.+++++|+.+..+|++....+.... + ....++++|+++|+++++.
T Consensus 79 sG~~a~~~~~~---~~~~~~d~ii~d~~~H~sv~~~~~~~~------------~-------~~~~~~~~d~~~l~~~l~~ 136 (370)
T PRK05937 79 SGYMANLGLCA---HLSSVTDYVLWDEQVHISVVYSLSVIS------------G-------WHQSFRHNDLDHLESLLES 136 (370)
T ss_pred ChHHHHHHHHH---HhCCCCCEEEEEhhhhHHHHHHHHHcC------------C-------ceEEecCCCHHHHHHHHHh
Confidence 99999976544 455678899999999997766654321 1 1345678899999999975
Q ss_pred CC---CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--ccCCCccccccC---CCCceeehh
Q 011959 243 NK---GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFG---VTPDLTTLG 313 (474)
Q Consensus 243 ~~---~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g---~~pdi~t~s 313 (474)
.. +++.+|+++++++++|.+.| +++|.++|++||++||+||+|+ |. ..+..+. ..++ +.+|+.|||
T Consensus 137 ~~~~~~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~-~~~~~~~~~~~~~tls 211 (370)
T PRK05937 137 CRQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFC-HSLGYENFYAVLVTYS 211 (370)
T ss_pred hhccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchH-HhhCCCCCcEEEEech
Confidence 31 34567889999999999999 9999999999999999999995 53 4443221 2223 235678999
Q ss_pred hhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 314 KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP--GTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 314 K~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
|++|+ +.+++++.+++.+.+......+. .+.+.++++++++.++++.+.+. ...++++++.+++++.|...
T Consensus 212 K~~g~--~G~~vl~~~~~~~~~~~~~~~~~-~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~---- 284 (370)
T PRK05937 212 KALGS--MGAALLSSSEVKQDLMLNSPPLR-YSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSA---- 284 (370)
T ss_pred hhhhc--CceEEEcCHHHHHHHHHhCCCCe-ecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCC----
Confidence 99984 12445566766555442112222 23457888888888999888653 24455555555555544321
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---CcceEEe--cCCcHHHHHHHHHH
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTS--LAHSSDDIQHTITA 466 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~~~~--~~~t~e~i~~~l~~ 466 (474)
. .+....+.+.. .....+.+.|.++||++.... .+.+|++ ..+|+||||++++.
T Consensus 285 ~-------~~~~~~i~~~~--------------~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~ 343 (370)
T PRK05937 285 A-------PGCVQPIFLPG--------------ISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSV 343 (370)
T ss_pred C-------CCCEEEEEeCC--------------hhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 1 11111233311 112567888899999887432 2346765 56899999999999
Q ss_pred HHHHHhh
Q 011959 467 AEKVLRQ 473 (474)
Q Consensus 467 l~~~~~~ 473 (474)
|++++++
T Consensus 344 L~~~~~~ 350 (370)
T PRK05937 344 LATYLEK 350 (370)
T ss_pred HHHHHHH
Confidence 9998764
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-26 Score=229.04 Aligned_cols=339 Identities=9% Similarity=0.111 Sum_probs=221.1
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCC---CCCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SI-EMVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~---~~~~~~~~la~~l~~~~~---~~-~~v~~~~sGseA~ 168 (474)
++..+||..|.. +++ ..+|.+.+++.+.+.+. ..|+ +..++++.+++++.+.++ .. ++|++++|+++++
T Consensus 38 ~~~~i~l~~g~~-~~~-~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al 115 (405)
T PRK06207 38 PGRPVDFSHGDV-DAH-EPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGAL 115 (405)
T ss_pred CCCceecCCcCC-CCC-CCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHH
Confidence 455667776632 222 25688999988887653 2232 245688899999988764 34 7899999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
..+++. ....++.|++.+++|.+... .+...|..+..++...... .+... -|+++|++.++. +++
T Consensus 116 ~~~~~~--l~~~Gd~Vlv~~P~y~~~~~-~~~~~g~~v~~v~~~~~~~------~~~~~---~d~~~l~~~~~~---~~k 180 (405)
T PRK06207 116 FLAVAA--TVARGDKVAIVQPDYFANRK-LVEFFEGEMVPVQLDYLSA------DKRAG---LDLDQLEEAFKA---GVR 180 (405)
T ss_pred HHHHHH--hcCCCCEEEEeCCCchhHHH-HHHHcCCEEEEEeccccCc------ccCCC---cCHHHHHHhhhh---cCe
Confidence 999984 23456789999999987543 3344444332221110000 00000 178999988864 356
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cccccCCCC-ce---eehhhhcC-CCcc
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTP-DL---TTLGKIIG-GGLP 321 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~p-di---~t~sK~l~-~G~~ 321 (474)
+|+++.++|++|.+.+.++ +++|.++|++||++||+||+|..| ..+... ....+...+ .+ .+|||+++ +|+|
T Consensus 181 ~v~l~~P~NPTG~~~s~e~-l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlR 259 (405)
T PRK06207 181 VFLFSNPNNPAGVVYSAEE-IAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYR 259 (405)
T ss_pred EEEECCCCCCCCcCCCHHH-HHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccc
Confidence 6666666788999888666 999999999999999999999988 544321 111112222 22 37999999 8999
Q ss_pred eEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhc-CCeeEEe
Q 011959 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKA-GHAICGG 398 (474)
Q Consensus 322 iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~v~ 398 (474)
+||+++++++++.+.. .......+.+.+.+.++.++|+.-.. ++..+.++++.+.+.+.|+ ++ ++....+
T Consensus 260 iG~ii~~~~l~~~~~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~----~~~~~~~~~p 332 (405)
T PRK06207 260 LGVAFGSPAIIDRMEK---LQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLR----GVEGVFVRAP 332 (405)
T ss_pred eEEEEcCHHHHHHHHH---HHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh----cCCCceecCC
Confidence 9999999999888863 22222445566788888777752100 1223333333334444443 33 2322234
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
..|+++|+.+.... .....+.+.|+ ++||.+.|+. .+++|+++..+++++++++++|.+++
T Consensus 333 ~gg~fl~~~l~~~~------------~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~~l 400 (405)
T PRK06207 333 QAGSYLFPRLPRLA------------VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQLI 400 (405)
T ss_pred CeeEEEEEeCcccC------------CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 46788888774211 01246788887 6899999863 24678998889999999999999988
Q ss_pred hh
Q 011959 472 RQ 473 (474)
Q Consensus 472 ~~ 473 (474)
++
T Consensus 401 ~~ 402 (405)
T PRK06207 401 ER 402 (405)
T ss_pred HH
Confidence 65
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-26 Score=228.90 Aligned_cols=334 Identities=13% Similarity=0.099 Sum_probs=212.6
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 167 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~---~~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA 167 (474)
+|+.++||..|. ..++ .++.+.+++.+.+.... .|+ +..++++++++++.+.++ +++ .|++|+|+++|
T Consensus 28 ~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~a 104 (388)
T PRK07366 28 AGKELIDLSLGS--SDLP-APAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEG 104 (388)
T ss_pred cCCCeEEeCCCC--CCCC-CCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHH
Confidence 356678888773 2333 47899999998876432 232 234677788888876543 456 69999999999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
+..+++. ....++.|++.+++|.++...+ ...|..+..++.....++ ..|++++++.+.. ++
T Consensus 105 l~~~~~~--l~~~gd~Vlv~~P~y~~~~~~~-~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~~~~---~~ 166 (388)
T PRK07366 105 TAHLPLA--VLNPGDFALLLDPGYPSHAGGV-YLAGGQIYPMPLRAENDF------------LPVFADIPTEVLA---QA 166 (388)
T ss_pred HHHHHHH--hCCCCCEEEEcCCCCcchHHHH-HhcCCEEEEEECCCccCC------------CCCHHHHHHhhcc---cc
Confidence 9999884 2345678999999998864333 334443322211100010 0167777665542 45
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCC---Cce---eehhhhcC-CC
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT---PDL---TTLGKIIG-GG 319 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~---pdi---~t~sK~l~-~G 319 (474)
++|++++++|++|.+.+.++ +++|.++|++||++||+||+|..| ..+........... +.+ -+|||++| +|
T Consensus 167 k~i~l~~p~NPTG~~~s~~~-~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~G 245 (388)
T PRK07366 167 RLMVLSYPHNPTTAIAPLSF-FQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGG 245 (388)
T ss_pred eEEEEeCCCCCCCccCCHHH-HHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcc
Confidence 67777777888999887666 999999999999999999999888 44321011111111 222 38999998 89
Q ss_pred cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
+|+||+++++++++.+.... ....++..+..+.++++++...++ +..++.++++.+.+.+.|++ +++....
T Consensus 246 lRiG~~v~~~~li~~l~~~~---~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~----~~~~~~~ 318 (388)
T PRK07366 246 FRIGFAIGNAQLIQALRQVK---AVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQ----IGWPVPL 318 (388)
T ss_pred hhheehcCCHHHHHHHHHHH---hhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----CCCcccC
Confidence 99999999999998886321 111223333344555666532111 23344444444555544443 4443334
Q ss_pred eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHH
Q 011959 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~ 470 (474)
+..|+++|+.+.... + ....++++.++ ++||.+.|+. .+++|++++.+++++++++++|.++
T Consensus 319 p~~g~f~~~~~~~~~----------~-~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 319 PEATMYVWAKLPEPW----------Q-GNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAF 387 (388)
T ss_pred CCeeEEEEEECCccc----------C-CCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 567888888774310 0 00245666664 6799999862 2467888888999999999999875
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-26 Score=226.29 Aligned_cols=333 Identities=14% Similarity=0.107 Sum_probs=219.0
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVL 172 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~al 172 (474)
.+|+|..|.. .++ .++.+.+++.+.+.... .|+ +..+++.++++++.+.++ ..+++++++|+++|+..++
T Consensus 25 ~~i~l~~g~~--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~ 101 (382)
T PRK06108 25 GVLPLWFGES--DLP-TPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAA 101 (382)
T ss_pred CeEEecCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHH
Confidence 4678887742 232 47899999998887642 232 245778888888887654 4689999999999999999
Q ss_pred HHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE
Q 011959 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
+. ....++.|++.+++|.... ..+...|..+..++...... .+. -|++++++.++. ++++|++
T Consensus 102 ~~--l~~~gd~vl~~~p~y~~~~-~~~~~~g~~~~~v~~~~~~~--------~~~---~d~~~l~~~~~~---~~~~i~l 164 (382)
T PRK06108 102 QA--LVGPGDEVVAVTPLWPNLV-AAPKILGARVVCVPLDFGGG--------GWT---LDLDRLLAAITP---RTRALFI 164 (382)
T ss_pred HH--hcCCCCEEEEeCCCccchH-HHHHHCCCEEEEeeCCCCCC--------Ccc---CCHHHHHHhcCc---cceEEEE
Confidence 84 2334677888888886643 33333444332211110000 000 178899888753 4667777
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc-CCCc-c-ccccCCCCce---eehhhhcC-CCcceEE
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AYGG-A-QEYFGVTPDL---TTLGKIIG-GGLPVGA 324 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~-g~~~-~-~~~~g~~pdi---~t~sK~l~-~G~~iG~ 324 (474)
+.++|++|.+.+ .+.+++|.++|++||++||+||+|.+| .. +... . ....+..+.+ .+|||.++ +|+|+||
T Consensus 165 ~~p~NPtG~~~~-~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~ 243 (382)
T PRK06108 165 NSPNNPTGWTAS-RDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGW 243 (382)
T ss_pred ECCCCCCCcccC-HHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceee
Confidence 667788898875 444999999999999999999999988 43 2111 1 1111112222 37999998 7999999
Q ss_pred EEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeece
Q 011959 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 402 (474)
Q Consensus 325 ~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~ 402 (474)
+++++++++.+.. .....+.+.+++.+.++.++|+...+ ++..++++++.+.+.+.|++.. ++....+..|.
T Consensus 244 ~~~~~~~~~~~~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~p~~g~ 317 (382)
T PRK06108 244 LVAPPALGQVLEK---LIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALP---GVEVAKPDGAM 317 (382)
T ss_pred eeCCHHHHHHHHH---HHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCC---CCcccCCCeeE
Confidence 9999999888763 22334566788899898888864211 2344455555555555554431 22222223455
Q ss_pred eEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
++++.+... ....++++.|+ ++||++.|+. ..++|+++..+++++++++++|.++++
T Consensus 318 ~~~~~l~~~-------------~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 318 YAFFRIPGV-------------TDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLA 381 (382)
T ss_pred EEEEeCCCC-------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 667666321 01246777776 5799998752 346788887799999999999999875
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=228.18 Aligned_cols=323 Identities=15% Similarity=0.136 Sum_probs=214.4
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF 178 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~ 178 (474)
.+|++..|- +.+| .+|++++++.+.+.....|+.+ ...+|.+.++++++ ..++|++++|+++++..+++. ..
T Consensus 33 ~~~~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~Y~~~--~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~--~~ 105 (369)
T PRK08153 33 FRARIGANE--SGFG-PSPSVIAAMREAAAEIWKYGDP--ENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRL--YV 105 (369)
T ss_pred ceeEecCCC--CCCC-CCHHHHHHHHHHHHHhhcCCCC--ccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHH--hc
Confidence 456887763 3444 6889999998877543334322 24577777777775 567999999999999998884 23
Q ss_pred cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCC
Q 011959 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (474)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (474)
..++.|++.+++|.+....+ ...|..+..+ |.... ..|++++++.+.. +++++|++..++|+
T Consensus 106 ~~gd~vlv~~p~y~~~~~~~-~~~g~~~~~v--p~~~~-------------~~~~~~l~~~~~~--~~~~~i~l~~P~NP 167 (369)
T PRK08153 106 EPGDPVVTSLGAYPTFNYHV-AGFGGRLVTV--PYRDD-------------REDLDALLDAARR--ENAPLVYLANPDNP 167 (369)
T ss_pred CCCCEEEECCCcchHHHHHH-HHcCCeEEEe--eCCCC-------------CCCHHHHHHHhcc--cCCcEEEEeCCCCC
Confidence 45677888888887754322 2223322211 11000 1167777665543 24566666555677
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEecHHHHH
Q 011959 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIME 333 (474)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~i~~ 333 (474)
+|.+.+.++ +.+|.++|+ ++++||+||+|..| ..+...... ...++++ ||||++| +|+|+||+++++++++
T Consensus 168 tG~~~~~~~-l~~l~~~~~-~~~~lI~DE~y~~~~~~~~~~~~~--~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~ 243 (369)
T PRK08153 168 MGSWHPAAD-IVAFIEALP-ETTLLVLDEAYCETAPAGAAPPID--TDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIK 243 (369)
T ss_pred CCCCCCHHH-HHHHHHhCC-CCcEEEEeCchhhhcCcccchhhh--hcCCCEEEEecchHhccCcchheeeeecCHHHHH
Confidence 899888665 777777776 49999999999888 443221111 1234433 8999999 8999999999999998
Q ss_pred hhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCC
Q 011959 334 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 413 (474)
Q Consensus 334 ~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~ 413 (474)
.+... ..+++.|++++.++.++|+ ++++.+++++..+..++.+.+.+...++. ..+..|.++++.+..
T Consensus 244 ~l~~~-----~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~L~~~g~~-~~p~~~~f~~~~~~~--- 311 (369)
T PRK08153 244 AFDKV-----RNHFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARDRIAAIARANGLT-PLPSATNFVAIDCGR--- 311 (369)
T ss_pred HHHHh-----hcCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCCc-cCCCcCcEEEEECCC---
Confidence 88632 1346789999999998885 34455566666666666665555555542 235566676665521
Q ss_pred cCcccccccchHHHHHHHHHHHHCCeEec-ccC---CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 414 YNFEDAKKSETTKFARFYRGMLEEGVYFA-PSQ---FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~-~~~---~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+......+.+.|+++||.+. |+. ..++|+++. ++++++.++++|++++..
T Consensus 312 ---------~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~-~~~~~~~~~~al~~~~~~ 365 (369)
T PRK08153 312 ---------DGAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG-PDEELDLFAEALPEALEA 365 (369)
T ss_pred ---------CcccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHHHHH
Confidence 11234678899999999995 432 246788866 789999999999998754
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=228.42 Aligned_cols=318 Identities=13% Similarity=0.100 Sum_probs=210.7
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF 178 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~ 178 (474)
+++||.+|. +++| .+|.+.+++.+.++... .++.....+|.+.+++++. +.+++++++|+++++..+++. ..
T Consensus 30 ~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~~--~~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~--~~ 102 (359)
T PRK03158 30 KIVKLASNE--NPYG-PSPKVKEAIAAHLDELA--LYPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRA--LL 102 (359)
T ss_pred ceEEecCCC--CCCC-CCHHHHHHHHHHHHHhh--cCCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHH--Hh
Confidence 688998875 4566 58899999998876532 2234445566666766665 568999999999999988873 22
Q ss_pred cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCC
Q 011959 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (474)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (474)
..++.|++.+++|+++... ....|..+...+.. .+ ..|++++++.+.. ++++++++.++|+
T Consensus 103 ~~gd~v~~~~p~y~~~~~~-~~~~g~~~~~~~~~--~~-------------~~d~~~l~~~~~~---~~~~v~i~~p~NP 163 (359)
T PRK03158 103 NPGTNTVMAEPTFSQYRHN-AIIEGAEVREVPLK--DG-------------GHDLEAMLKAIDE---QTKIVWICNPNNP 163 (359)
T ss_pred CCCCEEEEcCCCHHHHHHH-HHHcCCeEEEEecC--CC-------------CcCHHHHHHhcCC---CCCEEEEeCCCCC
Confidence 4567899999999875433 23334332221111 00 0178888877653 5667776667888
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-CccccccCCCCce---eehhhhcC-CCcceEEEEecHHHH
Q 011959 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPDL---TTLGKIIG-GGLPVGAYGGRRDIM 332 (474)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~~pdi---~t~sK~l~-~G~~iG~~~~~~~i~ 332 (474)
+|.+.+.++ +.++.+.|+ +|++||+||+|..| ..+. .......+..+.+ .||||.++ +|+|+||++++++++
T Consensus 164 tG~~~~~~~-l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~ 241 (359)
T PRK03158 164 TGTYVNHEE-LLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEELI 241 (359)
T ss_pred CCCCCCHHH-HHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHHHH
Confidence 999998444 444444442 69999999999877 4321 1111111112222 38999999 899999999999999
Q ss_pred HhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCC
Q 011959 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (474)
Q Consensus 333 ~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (474)
+.+... ..+++.|++++.++.++|+ +.++.+++.+..+..++.+.+.+.++++. ..++.|.++++.+...
T Consensus 242 ~~~~~~-----~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~g~~i~~~~~~~- 311 (359)
T PRK03158 242 EKLNIA-----RPPFNTTRIAQYAAIAALE---DQAFLKECVEKNAEGLEQYYAFCKEYGLF-YYPSQTNFIFVDTGRD- 311 (359)
T ss_pred HHHHHh-----cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHCCCe-eCCCcCcEEEEECCCC-
Confidence 888632 1246789999999988885 23344444444444444444444444432 3456688888765211
Q ss_pred CcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHH
Q 011959 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~ 470 (474)
..++.+.|+++||.+.++. .+++|+++. +.+++++++++|+++
T Consensus 312 --------------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~-~~~~~~~l~~al~~~ 358 (359)
T PRK03158 312 --------------ANELFEALLKKGYIVRSGAALGFPTGVRITIG-LKEQNDKIIELLKEL 358 (359)
T ss_pred --------------HHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHh
Confidence 2568888899999999862 345777755 889999999999875
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=225.90 Aligned_cols=331 Identities=14% Similarity=0.128 Sum_probs=217.5
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 170 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~ 170 (474)
|.+++++..|.. .++ .++.+.+++.+.+... ..|+ +..++++.+++++.+.++ ..++|++|+|+++|+..
T Consensus 31 ~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 107 (387)
T PRK08960 31 GHDVIHLEIGEP--DFT-TAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLL 107 (387)
T ss_pred CCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHH
Confidence 345677776642 223 4889999999988753 2232 235677788888766543 57899999999999999
Q ss_pred HHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEE
Q 011959 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (474)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (474)
+++. ...+++.|++.+++|......+ ...|..+..++.....+. --|++.+++.+++ +++++
T Consensus 108 ~~~~--~~~~gd~vlv~~p~y~~~~~~~-~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~~~~---~~~~i 169 (387)
T PRK08960 108 ASSL--LVDPGKHWLLADPGYPCNRHFL-RLVEGAAQLVPVGPDSRY------------QLTPALVERHWNA---DTVGA 169 (387)
T ss_pred HHHH--hcCCCCEEEEcCCCCcchHHHH-HhcCCeEEEEecCcccCC------------CCCHHHHHHHhCc---cceEE
Confidence 9984 2345678999999998765433 333443322221111010 0178899888764 34455
Q ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcC-CCcceEEE
Q 011959 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAY 325 (474)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~ 325 (474)
++..++|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+.. .......++++ +|||.+| +|+|+||+
T Consensus 170 ~i~~p~NPtG~~~~~~~-~~~l~~~~~~~~~~li~De~Y~~~~~~~~~--~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~ 246 (387)
T PRK08960 170 LVASPANPTGTLLSRDE-LAALSQALRARGGHLVVDEIYHGLTYGVDA--ASVLEVDDDAFVLNSFSKYFGMTGWRLGWL 246 (387)
T ss_pred EEECCCCCCCcCcCHHH-HHHHHHHHHHcCCEEEEEccccccccCCCC--CChhhccCCEEEEeecccccCCcccEEEEE
Confidence 55445678898887666 999999999999999999999888 43221 12233445654 6999998 89999999
Q ss_pred EecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHHHHHHHhhhcCCeeE-Eeee
Q 011959 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE----YLNKITGELTQGIIDAGKKAGHAIC-GGYI 400 (474)
Q Consensus 326 ~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~----~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~ 400 (474)
++++++++.+.. .....+.+.+.+.+.++.++|+. ...++.+ .++++.+.+.+.|+ .+++... .+..
T Consensus 247 ~~~~~~~~~~~~---~~~~~~~~~s~~~q~a~~~~l~~-~~~~~l~~~~~~~~~~~~~l~~~L~----~~~~~~~~~p~g 318 (387)
T PRK08960 247 VAPPAAVPELEK---LAQNLYISASTPAQHAALACFEP-ETLAILEARRAEFARRRDFLLPALR----ELGFGIAVEPQG 318 (387)
T ss_pred EcCHHHHHHHHH---HHhhhccCCCHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHHH----hcCCcCCcCCCe
Confidence 999999888763 22333456688888888888752 1122333 33344444444444 3443322 3445
Q ss_pred ceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC-------CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-------~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
|.++++++.+.. .+ ..++++.|+ ++||.+.|+. .+++|+++..+.+.+.+++++|.++++
T Consensus 319 ~~f~~~~~~~~~---------~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 319 AFYLYADISAFG---------GD---AFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGLR 386 (387)
T ss_pred eEEEEEeccccC---------CC---HHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 677777764310 01 246777766 6799999861 236788888889999999999998775
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=229.22 Aligned_cols=321 Identities=13% Similarity=0.140 Sum_probs=220.7
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHh
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~a 175 (474)
+++.+||+..|. +++| .+|.+++++.+.+..... |+.....+|.+.++++++ ..++|++++|+++++..+++.
T Consensus 27 ~~~~~i~l~~ne--n~~~-~~~~v~~a~~~~~~~~~~--Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~- 100 (366)
T PRK01533 27 GDHSFVKLASNE--NPFG-CSPRVLDELQKSWLDHAL--YPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRA- 100 (366)
T ss_pred CCCceEEeCCCC--CCCC-CCHHHHHHHHHHHHhcCc--CCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH-
Confidence 356789988875 5666 688999999887655332 344445567777777775 678999999999999999884
Q ss_pred HhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
....++.|++.+++|.++... ....|..+..++. ..+. -|++++++.+++ ++++++++.+
T Consensus 101 -l~~~gd~vlv~~P~y~~~~~~-~~~~g~~v~~v~~--~~~~-------------~d~~~l~~~~~~---~~~~v~i~~P 160 (366)
T PRK01533 101 -VLKAGDNIVTAGATFPQYRHH-AIIEGCEVKEVAL--NNGV-------------YDLDEISSVVDN---DTKIVWICNP 160 (366)
T ss_pred -hcCCCCEEEEcCCcHHHHHHH-HHHcCCEEEEeec--CCCC-------------cCHHHHHHHhCc---CCcEEEEeCC
Confidence 223457888889998775443 3344443322211 1110 178999888763 4556666666
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccccCCCCcee---ehhhhcC-CCcceEEEEecH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRR 329 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~ 329 (474)
+|++|.+.+.++ +++|.++|++++ ++|+||+|.+| ..+.. .......-.+.++ ||||.++ +|+|+||+++++
T Consensus 161 ~NPTG~~~~~~~-l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~ 238 (366)
T PRK01533 161 NNPTGTYVNDRK-LTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHE 238 (366)
T ss_pred CCCCCCCcCHHH-HHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCH
Confidence 788999888666 888999998876 57779999877 43211 1111122223333 7999999 899999999999
Q ss_pred HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEe
Q 011959 330 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (474)
Q Consensus 330 ~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (474)
++++.+... ..+++.|.+++.++.++|+ +.++.+++++.....++.+.+.....++. ..++.|+|+++.+.
T Consensus 239 ~~~~~l~~~-----~~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~~~l~~~g~~-~~~~~~nf~~~~~~ 309 (366)
T PRK01533 239 ELIEKLNVV-----RLPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYESFCKENEIP-FYQSQTNFIFLPVE 309 (366)
T ss_pred HHHHHHHHh-----cCCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhCCCc-cCCCcCcEEEEeCC
Confidence 999988732 1357889999999998884 34455455544444455555544444432 23557888888762
Q ss_pred cCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
+ ...+.+.|+++||.+++. .+++|++ ..+.+++++++++|+++++
T Consensus 310 ~----------------~~~~~~~l~~~GI~Vr~~-~~~iRis-~~~~~~~~~l~~al~~~~~ 354 (366)
T PRK01533 310 N----------------GGEIYEACAHAGFIIRPF-PNGVRIT-VGTREQNEGVISVLQQHFE 354 (366)
T ss_pred C----------------HHHHHHHHHHCCcEEccC-CCceEEe-CCCHHHHHHHHHHHHHHHH
Confidence 1 146889999999999985 3567777 4577999999999998874
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=224.63 Aligned_cols=343 Identities=15% Similarity=0.121 Sum_probs=219.3
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 167 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~---~~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA 167 (474)
.|..++||..+ ++.+..++.+.+++.+.+... ..|+ +..+++..+++++.+.++ ..+ +|++|+|+++|
T Consensus 31 ~~~~~~~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~a 107 (403)
T PRK08636 31 AGEDIIDFSMG---NPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEG 107 (403)
T ss_pred cCCCEEEcCCc---CCCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHH
Confidence 45668888877 555545677888877766542 2232 234678888888877653 455 79999999999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHH----HHHHHHhcC
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS----ALENLFENN 243 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~----~le~~l~~~ 243 (474)
+..+++. ...+++.|++.+++|.+.... ....|..+..++.....+. .+ |++ .++++++++
T Consensus 108 l~~~~~~--l~~~gd~Vlv~~P~y~~~~~~-~~~~g~~~~~v~~~~~~~~---------~~---d~~~l~~~l~~~~~~~ 172 (403)
T PRK08636 108 YVHLVQA--ITNPGDVAIVPDPAYPIHSQA-FILAGGNVHKMPLEYNEDF---------EL---DEDQFFENLEKALRES 172 (403)
T ss_pred HHHHHHH--hCCCCCEEEEcCCCCcchHHH-HHhcCCEEEEEeccccccC---------cc---ChhhhhhHHHHHHhhc
Confidence 9999984 234578888889999775433 3344443332221101100 01 444 567777655
Q ss_pred CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cccccCCCCc----eeehhhhcC
Q 011959 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPD----LTTLGKIIG 317 (474)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pd----i~t~sK~l~ 317 (474)
..++++++++.++|++|.+.+.++ +++|.++|++|+++||+||+|..| ..+... ....+.-.+| +.+|||.++
T Consensus 173 ~~~~~~i~~~~P~NPTG~~~s~~~-~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 251 (403)
T PRK08636 173 SPKPKYVVVNFPHNPTTATVEKSF-YERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYN 251 (403)
T ss_pred cCCceEEEEeCCCCCCCccCCHHH-HHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccC
Confidence 456777777766788999888777 999999999999999999999877 443211 1111111122 236999997
Q ss_pred -CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeE
Q 011959 318 -GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (474)
Q Consensus 318 -~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (474)
+|+|+||+++++++++.+.. ......++.+.+.+.++..+++. .+.+++++++.....++.+.+.+.+.++...
T Consensus 252 ~~GlRiG~iv~~~~li~~~~~---~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 326 (403)
T PRK08636 252 MAGWRVGFVVGNKKLVGALKK---IKSWLDYGMFTPIQVAATIALDG--DQSCVEEIRETYRKRRDVLIESFANAGWELQ 326 (403)
T ss_pred CccceeeeeeCCHHHHHHHHH---HHHHhcccCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 89999999999999988763 22222345566677766655542 1233333333333333333333333443333
Q ss_pred EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHH
Q 011959 397 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 397 v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
.+..|+++|+.+.+.. . .....++.+.++ ++||.+.|+. .+++|+++..+++++++++++|.+
T Consensus 327 ~p~~g~~~~~~l~~~~-~---------~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~~~rl~~ 396 (403)
T PRK08636 327 KPRASMFVWAKIPEPA-R---------HLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNIKK 396 (403)
T ss_pred CCCcceEEEEECCCcc-C---------CCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 3456788888774210 0 001246766655 6899998862 246789888899999999999999
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
+++.
T Consensus 397 ~l~~ 400 (403)
T PRK08636 397 FLKE 400 (403)
T ss_pred HHHh
Confidence 8864
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=225.76 Aligned_cols=331 Identities=12% Similarity=0.024 Sum_probs=217.3
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhCC----CC-CeEEEeCCHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP----SI-EMVRFVNSGTEAC 168 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---~~~~~~~~la~~l~~~~~----~~-~~v~~~~sGseA~ 168 (474)
.|+++|||..|. ..++ .++.+.+++.+.+.....|+ +..+++..+++++.+.++ +. ++|++|+|+++++
T Consensus 27 ~~~~~i~l~~~~--p~~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al 103 (396)
T PRK09147 27 ADLPPISLSIGE--PKHP-TPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREAL 103 (396)
T ss_pred cCCCeEecCCCC--CCCC-CCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHH
Confidence 477888988874 2333 47889999888765433343 235678888888877654 23 4899999999999
Q ss_pred HHHHHHhHhhcC---CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCC
Q 011959 169 MGVLRLARAFTG---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (474)
Q Consensus 169 ~~al~~ar~~~~---~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (474)
..+++. .... ++.|++.+++|.++... ....|..+..++.....++ . -|++++++.+.+
T Consensus 104 ~~~~~~--l~~~~~~gd~vlv~~P~y~~~~~~-~~~~g~~~~~vp~~~~~~~---------~---~d~~~l~~~~~~--- 165 (396)
T PRK09147 104 FAFAQT--VIDRDGPGPLVVCPNPFYQIYEGA-ALLAGAEPYFLNCDPANNF---------A---PDFDAVPAEVWA--- 165 (396)
T ss_pred HHHHHH--HcCCCCCCCEEEEcCCCccchHHH-HHhcCCEEEEeccCccccC---------c---cCHHHHHHHHhh---
Confidence 999984 2233 56788889999775433 3344443333222111110 0 178888877653
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC--Ccc-c---cccCC--CCcee---ehh
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGA-Q---EYFGV--TPDLT---TLG 313 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~--~~~-~---~~~g~--~pdi~---t~s 313 (474)
++++++++.++|++|.+.+.++ +++|.++|++|+++||+||+|..| ..+. ... . ...+. .+.++ +||
T Consensus 166 ~~k~i~l~nP~NPTG~~~s~~~-~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~S 244 (396)
T PRK09147 166 RTQLLFVCSPGNPTGAVLPLDD-WKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLS 244 (396)
T ss_pred ccEEEEEcCCCCCcCccCCHHH-HHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccc
Confidence 4667777666788999887666 999999999999999999999877 4331 111 1 01111 12233 799
Q ss_pred hhcC-CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 314 KIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 314 K~l~-~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
|.++ +|+|+||+++++++++.+.. .....+++.+++.+.++.+++..-.. ....+.++++.+.+.+.|.+.
T Consensus 245 K~~~~~GlRiG~~~~~~~l~~~~~~---~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~---- 317 (396)
T PRK09147 245 KRSNVPGLRSGFVAGDAALLKKFLL---YRTYHGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAPV---- 317 (396)
T ss_pred cccCCccceeeeecCCHHHHHHHHH---HhhhcccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 9987 79999999999999988763 22223456788888887777631100 122333444444444444432
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------------CcceEEecCCcHH
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------------FEAGFTSLAHSSD 458 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------------~~~~~~~~~~t~e 458 (474)
+....+..|.++|+.+... ..++++.|+ ++||.+.|+. .+++|++++.+++
T Consensus 318 -~~~~~p~~g~f~~~~~~~~---------------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~ 381 (396)
T PRK09147 318 -LDVQLPDAGFYLWAKVPGD---------------DTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLA 381 (396)
T ss_pred -cCCCCCCeeEEEEEECCCC---------------HHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCHH
Confidence 2222355788888876310 146777776 6799998763 2357888888999
Q ss_pred HHHHHHHHHHHHHh
Q 011959 459 DIQHTITAAEKVLR 472 (474)
Q Consensus 459 ~i~~~l~~l~~~~~ 472 (474)
++++++++|.++++
T Consensus 382 ~l~~~l~rl~~~~~ 395 (396)
T PRK09147 382 ECVEAAERIVDFCR 395 (396)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998874
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=226.02 Aligned_cols=338 Identities=14% Similarity=0.085 Sum_probs=219.5
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 167 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~---~~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA 167 (474)
.|+.+|||..|. ..++ .++.+.+++.+.+... ..|. +..+++..+++++.+.++ ..+ +|++|+|++++
T Consensus 28 ~~~~~i~l~~~~--p~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a 104 (405)
T PRK09148 28 AGADIIDLGMGN--PDLP-TPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEG 104 (405)
T ss_pred cCCCeEEcCCCC--CCCC-CCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHH
Confidence 466788888762 2233 3788888888876532 2232 234677888888876543 355 79999999999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
+..+++. ....++.|++.+++|.++...+ ...|..+..++... .+ ++++++++.++.+.+++
T Consensus 105 l~~~~~~--l~~~gd~Vl~~~P~y~~~~~~~-~~~g~~v~~v~~~~-~~--------------~~~~~l~~~~~~~~~~~ 166 (405)
T PRK09148 105 FANMAQA--ITAPGDVILCPNPSYPIHAFGF-IMAGGVIRSVPAEP-DE--------------EFFPALERAVRHSIPKP 166 (405)
T ss_pred HHHHHHH--hcCCCCEEEEcCCCCcccHHHH-HhcCCEEEEEeCCC-CC--------------CCccCHHHHHhhccccc
Confidence 9999884 2345678999999998864433 23343222211100 00 02344556665443456
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cccccCCCCc----eeehhhhcC-CCc
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPD----LTTLGKIIG-GGL 320 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pd----i~t~sK~l~-~G~ 320 (474)
.+++++.++|++|.+.+.++ +++|.++|++||++||+||+|..| ..+... ....+.-.++ +-+|||.++ +|+
T Consensus 167 ~~v~l~~P~NPtG~~~s~~~-l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGl 245 (405)
T PRK09148 167 IALIVNYPSNPTAYVADLDF-YKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGW 245 (405)
T ss_pred eEEEEeCCCCCCCcCCCHHH-HHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcch
Confidence 77777766788998887666 999999999999999999999887 433221 1111111122 337999999 899
Q ss_pred ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe
Q 011959 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (474)
|+||+++++++++.+.. .....+++.+.+++.++.+.|+..++ +...+.++++.+.+.+.|++ +++....+
T Consensus 246 R~G~~v~~~~~i~~l~~---~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~p 318 (405)
T PRK09148 246 RMGFAVGNERLIAALTR---VKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGR----AGWDIPPP 318 (405)
T ss_pred heeeeeCCHHHHHHHHH---HHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----cCCccCCC
Confidence 99999999999988863 22333556678888888887752111 22344445555555555544 34332234
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
..|+++|+.+.... .. ....++.+.|+ ++||.+.|+. ..++|+++..+++++++++++|.+++
T Consensus 319 ~~g~f~~~~l~~~~-~~---------~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~~~l 388 (405)
T PRK09148 319 AASMFAWAPIPEAF-RH---------LGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRIRQAARNIKRFL 388 (405)
T ss_pred CeeEEEEEECCCcc-CC---------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 56778888764210 00 01246777766 6899999862 24678888889999999999999887
Q ss_pred hh
Q 011959 472 RQ 473 (474)
Q Consensus 472 ~~ 473 (474)
++
T Consensus 389 ~~ 390 (405)
T PRK09148 389 SS 390 (405)
T ss_pred HH
Confidence 64
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=221.51 Aligned_cols=320 Identities=24% Similarity=0.299 Sum_probs=217.5
Q ss_pred CEEEeccCChhhccCCCC-CHHHHHHHHHHHHhcC-C------CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHA-DDQVLAALGETMKKGT-S------FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 170 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~-~------~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~ 170 (474)
++||.|+++ .+||++ ||+|++++++.+++.. . .....+...++.+.++++++ .+..+++++|++++..
T Consensus 1 ~~~~~~~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~~~iv~~sg~~a~~~ 76 (349)
T cd06454 1 KKVLNFCSN---DYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHG-KEAALVFSSGYAANDG 76 (349)
T ss_pred CCceecccC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhC-CCCEEEeccHHHHHHH
Confidence 468999998 999996 9999999999998732 1 11356777899999999884 4567888899999998
Q ss_pred HHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC--CCCeE
Q 011959 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGEIA 248 (474)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~a 248 (474)
+++.. ..+++.|++.+ .+|......+...|. ++..++..|.+++++++++. +++++
T Consensus 77 ~~~~~--~~~gd~Vl~~~-~~~~~~~~~~~~~g~-------------------~~~~~~~~~~~~le~~i~~~~~~~~~~ 134 (349)
T cd06454 77 VLSTL--AGKGDLIISDS-LNHASIIDGIRLSGA-------------------KKRIFKHNDMEDLEKLLREARRPYGKK 134 (349)
T ss_pred HHHHh--cCCCCEEEEeh-hhhHHHHHHHHHcCC-------------------ceEEecCCCHHHHHHHHHHhhccCCCe
Confidence 88732 23345566544 455544333333232 12233444788999988753 24678
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc-c-cCCCccccccC---CCCcee--ehhhhcCCCc
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-R-LAYGGAQEYFG---VTPDLT--TLGKIIGGGL 320 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-r-~g~~~~~~~~g---~~pdi~--t~sK~l~~G~ 320 (474)
+|+++++++++|...+ +++|.++|++||++||+||+|. |. . .+.. ...+. ...|++ +++|.+++
T Consensus 135 ~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~--~~~~~~~~~~~~i~~~s~sK~~~~-- 206 (349)
T cd06454 135 LIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHSVGVYGPHGRG--VEEFGGLTDDVDIIMGTLGKAFGA-- 206 (349)
T ss_pred EEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCC--hhhhccccccCcEEEeechhhhcc--
Confidence 8899999999998887 9999999999999999999995 43 2 1211 11111 134554 79999985
Q ss_pred ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee
Q 011959 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (474)
+.|++++++++++.+......+. .+.+.++..++++.++|+.+.+ +...+++.++.+++++.|.+. ++.....+
T Consensus 207 ~gG~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~ 281 (349)
T cd06454 207 VGGYIAGSKELIDYLRSYARGFI-FSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL----GFPVGGSP 281 (349)
T ss_pred cCCEEECCHHHHHHHHHhchhhh-ccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc----CCcccCCC
Confidence 55888999999887764222222 2335678888899999988765 556777788888888877664 22211111
Q ss_pred eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-------CcceEEec--CCcHHHHHHHHHHHHHH
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSL--AHSSDDIQHTITAAEKV 470 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~~~~--~~t~e~i~~~l~~l~~~ 470 (474)
.+.++.+.+. +.....++.+.|.++||.+.+.+ ...+|+++ ..+++++++++++|+++
T Consensus 282 ~~~~~~~~~~-------------~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 282 SHIIPPLIGD-------------DPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred CCcEEEEeCC-------------ChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 2222222211 11234678899999999987642 23567754 46999999999999864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=223.98 Aligned_cols=343 Identities=14% Similarity=0.065 Sum_probs=215.4
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--CC--CCCHHHHHHHHHHHhhCC----CCC-eEEEeCCHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG--APCLLENVLAEMVISAVP----SIE-MVRFVNSGTEA 167 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~--~~~~~~~~la~~l~~~~~----~~~-~v~~~~sGseA 167 (474)
.|++++|+..|. ..++ .+|.+.+++.+.+..... |. +...++..+++++.+.++ +.+ +|++|+|++++
T Consensus 42 ~~~~~i~L~~g~--p~~~-~~~~~~~~l~~~~~~~~~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~a 118 (410)
T PRK06290 42 PDMELIDMGVGE--PDEM-ADESVVEVLCEEAKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPA 118 (410)
T ss_pred CCCCeEEcCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHH
Confidence 455678888874 3444 577888888887654221 22 235667777777766543 244 79999999999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
+..+++. ....++.|++.+++|.+... .+...|..+..++.....++ ..|++++++.+.. ++
T Consensus 119 l~~~~~~--~~~~gd~Vlv~~P~y~~~~~-~~~~~g~~v~~v~~~~~~~~------------~~d~~~l~~~~~~---~~ 180 (410)
T PRK06290 119 LAMLPSC--FINPGDVTLMTVPGYPVTGT-HTKYYGGEVYNLPLLEENNF------------LPDLDSIPKDIKE---KA 180 (410)
T ss_pred HHHHHHH--hCCCCCEEEEeCCCCccHHH-HHHHcCCEEEEEecCCCcCC------------cCCHHHHHHhhcc---cc
Confidence 9999884 23456788899999987533 33334443332221100010 0178888887753 56
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-ccccCCC---CceeehhhhcC-CCcc
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFGVT---PDLTTLGKIIG-GGLP 321 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~g~~---pdi~t~sK~l~-~G~~ 321 (474)
++|+++.++|++|.+.+.++ +++|.++|++||++||+||+|..+ ..+.... .+..+.. .-+.+|||.++ +|+|
T Consensus 181 k~i~l~nP~NPTG~v~s~e~-l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlR 259 (410)
T PRK06290 181 KLLYLNYPNNPTGAVATKEF-YEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWR 259 (410)
T ss_pred eEEEEECCCCCCCcCCCHHH-HHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhh
Confidence 77777755788999887666 999999999999999999999877 4332111 1111111 12237999997 8999
Q ss_pred eEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeee
Q 011959 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (474)
Q Consensus 322 iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (474)
+||+++++++++.+.. .......+.+.+++.++.++|+...- +...++++++.+.+.+.|++ +++....+..
T Consensus 260 iG~ii~~~~l~~~l~~---~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~p~g 332 (410)
T PRK06290 260 LAFVVGNELIVKAFAT---VKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNE----VGFKAEMPGG 332 (410)
T ss_pred eEeEEeCHHHHHHHHH---HHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHh----CCCeecCCCe
Confidence 9999999999988863 21222334455777777777753110 23344445555555555544 3433222334
Q ss_pred ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCC-eEecccCC--cceEEecC---CcHHHHHHHHHHHHHHHhhC
Q 011959 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG-VYFAPSQF--EAGFTSLA---HSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~~~--~~~~~~~~---~t~e~i~~~l~~l~~~~~~~ 474 (474)
|.++|+.+.+...... ......++++.|+++| +++.|+.. .++|++++ .++|+.++++++|++.+.++
T Consensus 333 ~f~l~v~lp~~~~~~~------~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 333 TFYLYVKAPKGTKSGI------KFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred eeEEEEECCCccccCC------CCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence 5555666643210000 0012357889999886 45555432 35788765 59999999999999998764
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=222.88 Aligned_cols=330 Identities=14% Similarity=0.094 Sum_probs=212.9
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~---~~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~ 168 (474)
|..+|||..+ ++....+|.+.+++.+.+.... .|+ +..+++.++++++.+.++ ..+ +|++|+|+++++
T Consensus 31 ~~~~i~l~~~---~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l 107 (389)
T PRK08068 31 GHDVINLGQG---NPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGL 107 (389)
T ss_pred CCCeEEecCC---CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHH
Confidence 3456888777 5555567889999998876532 232 235677788887765543 355 799999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
..+++. ...+++.|++.+++|..+... +...|..+..++.....++. -|++++++.+.. +++
T Consensus 108 ~~~~~~--~~~~gd~vlv~~P~y~~~~~~-~~~~g~~~~~i~~~~~~~~~------------~d~~~l~~~~~~---~~~ 169 (389)
T PRK08068 108 VELPQC--LMNPGDTILVPDPGYPDYLSG-VALARAQFETMPLIAENNFL------------PDYTKIPEEVAE---KAK 169 (389)
T ss_pred HHHHHH--hCCCCCEEEEcCCCCcchHHH-HHhcCCEEEEeecccccCCC------------CCHHHHHHhccc---cce
Confidence 988773 234567789989999765433 33444433222211011110 167888877753 456
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC-CC-ccccccCCCCc---eeehhhhcC-CCcc
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YG-GAQEYFGVTPD---LTTLGKIIG-GGLP 321 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~~-~~~~~~g~~pd---i~t~sK~l~-~G~~ 321 (474)
+|++..++|++|.+.+.++ +++|.++|++||++||+||+|..| ..+ .. ......+..+. +.+|||.+| +|+|
T Consensus 170 ~v~l~~P~NPTG~~~s~~~-~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlR 248 (389)
T PRK08068 170 LMYLNYPNNPTGAVATKAF-FEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWR 248 (389)
T ss_pred EEEEECCCCCCCCcCCHHH-HHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccce
Confidence 6666645788998887666 999999999999999999999777 443 11 11122222222 237999998 8999
Q ss_pred eEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee
Q 011959 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (474)
Q Consensus 322 iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (474)
+||+++++++++.+.... .....+.+++.+.++.+++....+ +.+++.++++.+.+.+.|++ +++.. .++
T Consensus 249 iG~~~~~~~l~~~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~----~g~~~-~~~ 320 (389)
T PRK08068 249 VAFAVGNESVIEAINLLQ---DHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACRE----IGWEV-DAP 320 (389)
T ss_pred eEeEecCHHHHHHHHHHH---hhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----CCCcc-cCC
Confidence 999999999998886321 111234445566666666642111 23455555555566665554 34322 233
Q ss_pred ec-eeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC------CcceEEecCCcHHHHHHHHHHHHHH
Q 011959 400 IS-GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 400 ~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~ 470 (474)
.| .++++.+... ....++.+.|++ +||++.|+. .+++|+++..+++.+.+++++|.++
T Consensus 321 ~g~~~~~v~~~~~-------------~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 386 (389)
T PRK08068 321 KGSFFAWMPVPKG-------------YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGKL 386 (389)
T ss_pred CeeEEEEEECCCC-------------CCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence 44 5567776421 012578888886 699998852 2467888888889999999988764
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=218.91 Aligned_cols=316 Identities=17% Similarity=0.172 Sum_probs=222.5
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHh
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARA 177 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~ 177 (474)
.++|+.+|. |++| .+|.+.+++.+.++....| |+....+|.+.+++++. ..+.|+.+||.+|.+...++. .
T Consensus 23 ~~i~LssNe--nP~g-p~~~~~~~~~~~~~~~~rY--Pd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~--~ 95 (356)
T COG0079 23 GIIKLSSNE--NPYG-PPPKVIEAIRAALDKLNRY--PDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRA--F 95 (356)
T ss_pred cceeecCCC--CCCC-CCHHHHHHHHHHHHhhccC--CCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHH--h
Confidence 688999887 8888 5699999999988754434 55567788888888875 357899999999999999984 2
Q ss_pred hcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC----CCHHHHHHHHhcCCCCeEEEEEc
Q 011959 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFENNKGEIAAIILE 253 (474)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~a~vi~e 253 (474)
..+++.|++..++|.-+...+. ..|.. ++.++. .|++.+.+.+.+ ++.+|++.
T Consensus 96 ~~~gd~vl~~~Ptf~~Y~~~a~-~~g~~-------------------~~~v~~~~~~~d~~~~~~~~~~---~~~lv~i~ 152 (356)
T COG0079 96 VEPGDTVLIPEPTFSMYEIAAQ-LAGAE-------------------VVKVPLKEFRLDLDAILAAIRD---KTKLVFLC 152 (356)
T ss_pred hcCCCEEEEcCCChHHHHHHHH-hcCCe-------------------EEEecccccccCHHHHHHhhhc---CCCEEEEe
Confidence 3345799999999866443332 22322 222222 267777777763 46677777
Q ss_pred cccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEec
Q 011959 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGR 328 (474)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~ 328 (474)
.++|++|...+.++ ++++.+.|.+ +.+||+||+|..| . ........-.++++ ||||++| +|+|+||++++
T Consensus 153 nPNNPTG~~~~~~~-l~~l~~~~~~-~~~vVvDEAY~eF~~---~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~ 227 (356)
T COG0079 153 NPNNPTGTLLPREE-LRALLEALPE-GGLVVIDEAYIEFSP---ESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIAN 227 (356)
T ss_pred CCCCCCCCCCCHHH-HHHHHHhCCC-CcEEEEeCchhhcCC---chhhhhccCCCCEEEEEecHHhhhcchhceeeccCC
Confidence 66788898888666 7777777777 9999999999988 5 11122222233354 8999999 99999999999
Q ss_pred HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEE
Q 011959 329 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408 (474)
Q Consensus 329 ~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~ 408 (474)
+++++.+.+ ....|+.|.++++++.++|+.- ++.+...+....-+++|.+.+.+.++....++.++|+.+.+
T Consensus 228 ~~~i~~l~~-----vr~p~~v~~~a~~aa~aal~~~---~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~aNFvlv~~ 299 (356)
T COG0079 228 PELIAALNK-----VRPPFNVSSPALAAAIAALRDA---DYLEESVERIREERERLYAALKALGLFGVFPSQANFVLVRV 299 (356)
T ss_pred HHHHHHHHH-----hcCCCCCCHHHHHHHHHHcccH---HHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcEEEEEC
Confidence 999999984 3357888999999999988643 34444444444444444444444442223455678877776
Q ss_pred ecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-----cceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----EAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+ .. ...+.+.|+++||+++.... .++|++ ..|+|+.++++++|+++++.
T Consensus 300 ~~-------------~~-~~~l~~~L~~~giivR~~~~~~~~~~~lRit-vgt~een~~ll~AL~~~~~~ 354 (356)
T COG0079 300 PD-------------AE-AAALAEALLKKGILVRDCSSVGLLPGYLRIT-VGTPEENDRLLAALREVLKG 354 (356)
T ss_pred CC-------------cc-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEE-eCCHHHHHHHHHHHHHHHhc
Confidence 42 12 35788999999999998743 245655 45777779999999998764
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=223.41 Aligned_cols=321 Identities=15% Similarity=0.116 Sum_probs=211.6
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHh
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~a 175 (474)
+|.+++||..|. ++++ .+|.+.+++.+.+.....| +.....+|.+.++++++ ..++|++|+|+++++..+++.
T Consensus 28 ~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~Y--~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~- 101 (357)
T PRK14809 28 DPDDLVKLSSNE--NPHG-PSPAAVEAIREAAERVHSY--PKASHADLTAALADRWDVSPEQVWLANGGDGALDYLARA- 101 (357)
T ss_pred CccceeEecCCC--CCCC-CCHHHHHHHHHHHhhhhcC--CCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH-
Confidence 456799998874 4455 6788999998877653333 33334567777777776 678999999999999999884
Q ss_pred HhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
....++.|++.+++|..+.. .....|..+...+.+...++ . .|++++++.+. ++++|+++++
T Consensus 102 -~~~~gd~V~v~~P~y~~~~~-~~~~~g~~~~~~~l~~~~~~-----------~-~~~~~~~~~~~----~~k~i~l~~p 163 (357)
T PRK14809 102 -MLDPGDTVLVPDPGFAYYGM-SARYHHGEVREYPVSKADDF-----------E-QTADTVLDAYD----GERIVYLTSP 163 (357)
T ss_pred -hcCCCCEEEEeCCChHHHHH-HHHHcCCeEEEEecccCcCC-----------C-cCHHHHHHhhc----CCcEEEEeCC
Confidence 23456788888998864332 23333443322222111111 0 15666655432 3566777777
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cccccCCCCceeehhhhcC-CCcceEEEEecHHHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIM 332 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i~ 332 (474)
+|++|.+.+.++ +++|.++|++ +++||+||+|..| ..+... ..+..+-..-+.||||.++ +|+|+||++++++++
T Consensus 164 ~NPTG~~~s~~~-~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~ 241 (357)
T PRK14809 164 HNPTGSEIPLDE-VEALAERTDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWA 241 (357)
T ss_pred CCCCCcCCCHHH-HHHHHHhCcc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHH
Confidence 788999998666 7777777764 7899999999888 433211 1111111122348999998 899999999999999
Q ss_pred HhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCC
Q 011959 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (474)
Q Consensus 333 ~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (474)
+.+... ..+++.+++++.++.++|+ ++++.++.++..+..++.+.+.+.... .+..|+++++.+.+
T Consensus 242 ~~~~~~-----~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~g~f~~~~~~~-- 307 (357)
T PRK14809 242 DAYARV-----NTPFAASELACRAGLAALD---DDEHVERTVETARWAREYIREELDAPT----WESAGNFVLAEVGD-- 307 (357)
T ss_pred HHHHHh-----CCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhcCcc----CCCCCCEEEEECCC--
Confidence 988731 2356778888888888774 233444444444444444444333222 24678888876521
Q ss_pred CcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
..++.+.|.++||.+.++. .+++|+++. +++++++++++|+++++
T Consensus 308 --------------~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~~-~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 308 --------------ASAVAEAAQERGVIVRDCTSFGLPECIRITCG-TREETERAVEVLNEVLA 356 (357)
T ss_pred --------------HHHHHHHHHHCCEEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHhc
Confidence 1467788889999999874 235788765 57899999999999875
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=223.22 Aligned_cols=337 Identities=14% Similarity=0.114 Sum_probs=222.7
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC---C-CCeEEEeCCHHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---S-IEMVRFVNSGTEACMG 170 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~---~~~~~~~~la~~l~~~~~---~-~~~v~~~~sGseA~~~ 170 (474)
+.+|||..|.. .++ .++.+.+++.+.+... ..|+ +..++++.+++++...++ . .++|++++|+++|+..
T Consensus 30 ~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~ 106 (391)
T PRK07309 30 PGILKLTLGEP--DFT-TPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSA 106 (391)
T ss_pred CCeEEcCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 45889888852 344 3678889988877653 2232 235677778887766543 2 3689999999999999
Q ss_pred HHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEE
Q 011959 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (474)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (474)
+++. ...+++.|++.+++|.++. ......|..+..++.. ..+. . -|++.+++.+++.++++++|
T Consensus 107 ~~~~--~~~~gd~vl~~~p~y~~~~-~~~~~~g~~~~~~~~~-~~~~---------~---~d~~~l~~~~~~~~~~~~~i 170 (391)
T PRK07309 107 SLTA--ILEPGDKVLLPAPAYPGYE-PIVNLVGAEIVEIDTT-ENDF---------V---LTPEMLEKAILEQGDKLKAV 170 (391)
T ss_pred HHHH--hcCCCCEEEEeCCCCcchH-HHHHHcCCEEEEEecC-CcCC---------c---CCHHHHHHHhhccCCCeEEE
Confidence 9884 2345678899999998854 3344444433221110 0000 0 17899999887654467788
Q ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccccCCCCce---eehhhhcC-CCcceEE
Q 011959 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDL---TTLGKIIG-GGLPVGA 324 (474)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pdi---~t~sK~l~-~G~~iG~ 324 (474)
+++.++|++|.+.+..+ +++|.++|++||+++|+||+|..| ..+.. .....+. ..++ .+|||.++ +|+|+||
T Consensus 171 ~l~~P~NPtG~~~s~~~-~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~g~~GlRvG~ 248 (391)
T PRK07309 171 ILNYPANPTGVTYSREQ-IKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYL-PDQTILINGLSKSHAMTGWRIGL 248 (391)
T ss_pred EEECCCCCCCcCcCHHH-HHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhc-cCCEEEEecChhhccCccceeEE
Confidence 77756788898887666 999999999999999999999888 43422 1111111 1122 27999998 8999999
Q ss_pred EEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeece
Q 011959 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 402 (474)
Q Consensus 325 ~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~ 402 (474)
+++++++++.+.. .....+.+.+++++.++.+.|+.... ....++++++.+++.+.|++ +++....+..|.
T Consensus 249 ~v~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~p~gg~ 321 (391)
T PRK07309 249 IFAPAEFTAQLIK---SHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTD----LGFKIIKPDGAF 321 (391)
T ss_pred EEeCHHHHHHHHH---HHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHH----CCCeecCCCeeE
Confidence 9999999988863 12223346688888888887763211 22344555555656655554 343333334455
Q ss_pred eEEEEEecCCCcCcccccccchHHHHHHHHH-HHHCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRG-MLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
++++.+.... .....++.+. +.++||.+.|+. .+++|+++..+.+++++++++|.++++++
T Consensus 322 ~~~~~l~~~~-----------~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~i~~l~~~~~~~ 389 (391)
T PRK07309 322 YIFAKIPAGY-----------NQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYMEEH 389 (391)
T ss_pred EEEEECCCCC-----------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 6666653210 0012456655 457899998763 24678888888999999999999998753
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=219.20 Aligned_cols=327 Identities=15% Similarity=0.110 Sum_probs=211.4
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGVL 172 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~---~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~~~al 172 (474)
+++||..+.. .++ .+|++.+++++.......|.. ..+++.++++++.+.++ +.+ +|++|+|+++|+..++
T Consensus 1 ~~~~~~~g~p--~~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~ 77 (350)
T TIGR03537 1 RLFDFGTGDP--KEP-TPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFP 77 (350)
T ss_pred CeEeccCCCC--CCC-CCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHH
Confidence 3578887742 233 478899999887654333432 34777888888876643 355 8999999999999988
Q ss_pred HHhHhhcCC----cEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 173 RLARAFTGR----ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 173 ~~ar~~~~~----~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
. .+.+. +.|++.+++|.++...+ ...|..+..++.....++ . -|++++++.+.+ +++
T Consensus 78 ~---~~~~~g~~~d~Vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~~~~~---------~---~d~~~l~~~~~~---~~~ 138 (350)
T TIGR03537 78 L---VFIDPEEDRRRVIFGTPGYPVYERGA-LFAGGEPTAVKLKKEDGF---------L---LRLEKVEKSILE---ETK 138 (350)
T ss_pred H---HHcCCCCCCceEEEcCCCCcchHHHH-HhcCCEEEEcccCcccCC---------c---cCHHHHHHhhhh---ccE
Confidence 7 33332 58999999998755443 334443332221111111 0 178999888764 467
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcC-CCcceE
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVG 323 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG 323 (474)
++++++++|++|.+.+.++ +++|.++|++||+++|+||+|..+ ..+.......++. +.++ +|||.++ +|+|+|
T Consensus 139 ~i~i~~p~NPtG~~~~~~~-~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~g~~GlRiG 216 (350)
T TIGR03537 139 IVWINYPHNPTGATAPRSY-LKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGI-ENVLAFHSLSKRSGMTGYRSG 216 (350)
T ss_pred EEEEeCCCCCcCcccCHHH-HHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCc-CCEEEEeecccccCCccccce
Confidence 7777777888998887666 999999999999999999999766 3222211111121 2222 7999997 799999
Q ss_pred EEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeecee
Q 011959 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403 (474)
Q Consensus 324 ~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~ 403 (474)
|+++++++++.+.. .....+.+.+++++.++.+++. ++++.++.++..+..++.+.+.+.++++....+..|.+
T Consensus 217 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~g~~~ 290 (350)
T TIGR03537 217 FVAGDEKLISFLRK---LRANFGVASPDFVQAAAKAAWS---DDNHVLERRKIFKRKRDLFIEFFNKVGLEYLYPDATFY 290 (350)
T ss_pred eeecCHHHHHHHHH---HHHhhccCCCHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeEEE
Confidence 99999999888763 2122233455567777766654 23333333333333333333333334443233344556
Q ss_pred EEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------CcceEEecCCcHHHHHHHHHHHHH
Q 011959 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
+++.+... ....++++.|.++||++.++. .+++|+++..+++++++++++|++
T Consensus 291 ~~~~~~~~-------------~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 291 LWVKVPSG-------------IDAKDYALRLLENGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRLWER 349 (350)
T ss_pred EEEECCCC-------------CCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHhc
Confidence 77776421 112578889999999998753 245788877889999999998875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=223.29 Aligned_cols=330 Identities=15% Similarity=0.123 Sum_probs=217.0
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMG 170 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~---~~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~~~ 170 (474)
+.++||..|. +-...++.+.+++.+.++.. ..|. +..+++.++++++.+.++ ..+ ++++++|+++|+..
T Consensus 30 ~~~i~l~~g~---~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~ 106 (386)
T PRK09082 30 HGAINLSQGF---PDFDGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFA 106 (386)
T ss_pred CCEEEecCCC---CCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHH
Confidence 3568888873 22235788999998887653 2232 245678889998887764 233 79999999999999
Q ss_pred HHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEE
Q 011959 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (474)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (474)
+++.. ...++.|++.+++|.+.. ..+...|..+..++... .+. .-|++++++.++. ++++|
T Consensus 107 ~~~~~--~~~gd~Vli~~p~y~~~~-~~~~~~g~~~~~~~~~~-~~~------------~~d~~~l~~~~~~---~~~~v 167 (386)
T PRK09082 107 AILAL--VRPGDEVIVFDPSYDSYA-PAIELAGGRAVRVALQP-PDF------------RVDWQRFAAAISP---RTRLI 167 (386)
T ss_pred HHHHH--cCCCCEEEEeCCCchhhH-HHHHHcCCEEEEEecCc-ccc------------cCCHHHHHHhcCc---cceEE
Confidence 99842 345678888888776643 33344444332221110 010 0178899888863 46777
Q ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC--ccccccCCCCcee---ehhhhcC-CCcceE
Q 011959 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDLT---TLGKIIG-GGLPVG 323 (474)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~--~~~~~~g~~pdi~---t~sK~l~-~G~~iG 323 (474)
+++.++|++|.+.+..+ +++|.++|++||+++|+||+|..+ ..+.. ......+....++ +|||.++ +|+|+|
T Consensus 168 ~l~~p~NPtG~~~~~~~-~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG 246 (386)
T PRK09082 168 ILNTPHNPSGTVWSAAD-MRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVG 246 (386)
T ss_pred EEeCCCCCCCcCCCHHH-HHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhh
Confidence 77777788998887666 999999999999999999999877 43321 1122223323333 7999997 899999
Q ss_pred EEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeec
Q 011959 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 401 (474)
Q Consensus 324 ~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g 401 (474)
|+++++++++.+.. ......++.+.+++.++.+.++...+ +.+.+.++++.+.+.+.|++ .++.......|
T Consensus 247 ~iv~~~~l~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~~~~~~~g~ 319 (386)
T PRK09082 247 YCVAPAALSAEFRK---VHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALAN----SRFKLLPCEGT 319 (386)
T ss_pred hhhCCHHHHHHHHH---HHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh----CCCcccCCCee
Confidence 99999999988873 22334567788888887776652111 22334445555555555554 33332223445
Q ss_pred eeEEEEEecCCCcCcccccccchHHHHHHHHHH-HHCCeEecccC--------CcceEEecCCcHHHHHHHHHHHHH
Q 011959 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~--------~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
.++++.+.+-+ .....++++.| .++||.+.|+. .+++|+++..+++++++++++|.+
T Consensus 320 ~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 320 YFQLVDYSAIS-----------DLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAAERLCQ 385 (386)
T ss_pred EEEEEeccccC-----------CCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 66777764210 00125677766 47799998863 135789888899999999999875
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=221.94 Aligned_cols=324 Identities=15% Similarity=0.166 Sum_probs=216.5
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHh
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~a 175 (474)
++++++||.++. +++| .+|.+++++.+.+.....| +.....+|.+.++++++ ..++|++++|+++++..+++.
T Consensus 30 ~~~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~y--~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~- 103 (367)
T PRK02731 30 GIADIIKLASNE--NPLG-PSPKAIEAIRAAADELHRY--PDGSGFELKAALAEKFGVDPERIILGNGSDEILELLARA- 103 (367)
T ss_pred CCCceEEecCCC--CCCC-CCHHHHHHHHHHHHhhcCC--CCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHH-
Confidence 677899999885 5677 5788999999987654333 32223567777777775 467899999999998887773
Q ss_pred HhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
....++.|++.+++|..+.. .....|..+...+. ... ..|++++++.++. ++++|+++.+
T Consensus 104 -l~~~gd~vl~~~p~y~~~~~-~~~~~g~~~~~~~~--~~~-------------~~~~~~l~~~~~~---~~~~v~l~~p 163 (367)
T PRK02731 104 -YLGPGDEVIYSEHGFAVYPI-AAQAVGAKPVEVPA--KDY-------------GHDLDAMLAAVTP---RTRLVFIANP 163 (367)
T ss_pred -hcCCCCEEEEecCCHHHHHH-HHHHcCCeEEEecc--cCC-------------CCCHHHHHHHhCC---CCcEEEEeCC
Confidence 23346788888888865432 23333433222111 000 1178999888862 5677777777
Q ss_pred cCCCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-ccCC-CccccccCCCCcee---ehhhhcC-CCcceEEEEe
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAY-GGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGG 327 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~-~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~ 327 (474)
+|++|.+.+ .+++.++|+. +|+++|+||+|.++ ..+. ......++..++++ +|||.+| +|+|+||+++
T Consensus 164 ~nptG~~~~----~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~ 239 (367)
T PRK02731 164 NNPTGTYLP----AEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIA 239 (367)
T ss_pred CCCCCcCCC----HHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeC
Confidence 888999998 4455555554 49999999999877 4332 22223333334544 7999998 7999999999
Q ss_pred cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEE
Q 011959 328 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (474)
Q Consensus 328 ~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (474)
++++++.+.... .+++.+++++.++.+.|+ +.++.+++++..+..++.+.+.+.++++.. .++.|.++++.
T Consensus 240 ~~~~~~~l~~~~-----~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~g~~~~i~ 310 (367)
T PRK02731 240 PPEIIDALNRVR-----QPFNVNSLALAAAVAALD---DDAFVEKSRALNAEGMAWLTEFLAELGLEY-IPSVGNFILVD 310 (367)
T ss_pred CHHHHHHHHHcc-----CCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHCCCcc-CCCCceEEEEE
Confidence 999998887321 245668888888877775 233344444444444444444444444332 24568888887
Q ss_pred EecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+... ....++.+.|.++||++.++. .+.+|+++. +.+++++++++|+++++.
T Consensus 311 ~~~~-------------~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~-~~~e~~~l~~aL~~~~~~ 366 (367)
T PRK02731 311 FDDG-------------KDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG-TEEENRRFLAALKEFLAA 366 (367)
T ss_pred CCCC-------------CCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 6321 113578889999999998863 235788875 788999999999998763
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-25 Score=224.23 Aligned_cols=343 Identities=11% Similarity=0.059 Sum_probs=213.0
Q ss_pred CCCEEEeccCChhhccC----CCCCHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCCeEEEeCCH
Q 011959 97 DGNEYIDYVGSWGPAII----GHADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIEMVRFVNSG 164 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~l----G~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~---~~~~v~~~~sG 164 (474)
+++.+|++..| ++. -..++++.+++.+.+..+..+.| ..++++.+++++.+.++ .+++|++|+|+
T Consensus 64 ~~~~vi~l~~G---dp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~ 140 (462)
T PLN02187 64 VNKTILPLGHG---DPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGC 140 (462)
T ss_pred CCCCeEECCCC---CCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCH
Confidence 35778888777 332 22467899999988876432222 23577778887776544 57899999999
Q ss_pred HHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC
Q 011959 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (474)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (474)
++|+..+++. ...+++.|++.+++|.++.. .....|..+..++.....+. . -|+++|+++++.+
T Consensus 141 ~~al~~~~~~--l~~pGd~Vlv~~P~y~~y~~-~~~~~g~~~~~~~l~~~~~~---------~---~d~~~l~~~~~~~- 204 (462)
T PLN02187 141 NQGIEIVFES--LARPNANILLPRPGFPHYDA-RAAYSGLEVRKFDLLPEKEW---------E---IDLEGIEAIADEN- 204 (462)
T ss_pred HHHHHHHHHH--hcCCCCEEEEeCCCCccHHH-HHHHcCCEEEEEeCccccCC---------c---cCHHHHHHhcCCC-
Confidence 9999999994 23456889999999987533 33444544332222100000 0 1789998887632
Q ss_pred CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cccccCCCCcee---ehhhhcC-C
Q 011959 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLT---TLGKIIG-G 318 (474)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pdi~---t~sK~l~-~ 318 (474)
..+.++++| +|++|.+.+.++ +++|.++|++||++||+||+|..| ..+..+ ....+.-...++ +|||.++ +
T Consensus 205 -~~~v~i~nP-~NPTG~v~s~e~-l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~p 281 (462)
T PLN02187 205 -TVAMVVINP-NNPCGNVYSHDH-LKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVP 281 (462)
T ss_pred -cEEEEEeCC-CCCCCCccCHHH-HHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCc
Confidence 334455555 578898887666 999999999999999999999987 444222 111121111232 7999988 8
Q ss_pred CcceEEEEec-H-HH---HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 319 GLPVGAYGGR-R-DI---MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 319 G~~iG~~~~~-~-~i---~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
|||+||++++ + .+ ++.+........ .+.+.+.+++.++.++|+...+ +...+.++++.+.+.+.|++
T Consensus 282 GlRiG~~v~~~p~~~~~~~~~~~~~~~~~~-~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~---- 356 (462)
T PLN02187 282 GWKIGWIALNDPEGVFETTKVLQSIKQNLD-VTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKD---- 356 (462)
T ss_pred cceeEEEEecCchhHHHHHHHHHHHHHhcc-ccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 9999999873 3 22 223321111111 1224478889888888863111 22334444445555555543
Q ss_pred cCCeeE--EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHH
Q 011959 391 AGHAIC--GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTI 464 (474)
Q Consensus 391 ~~~~~~--v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l 464 (474)
++.... .+..|+++++.+.......+ . ...+.+.+.+.++||.+.|+. .+++|+++...++.+++++
T Consensus 357 ~~~~~~~~~P~gg~fl~~~l~~~~~~~~-----~--~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~~~e~l~~al 429 (462)
T PLN02187 357 IPCVVCPKKPESCTYLLTKLELSLMDNI-----K--DDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDAL 429 (462)
T ss_pred CCCCcCCCCCCEeEEEEeecChhhCCCC-----C--CHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCCCHHHHHHHH
Confidence 332221 24456777776632100000 0 011233455678899999863 3468999998999999999
Q ss_pred HHHHHHHhh
Q 011959 465 TAAEKVLRQ 473 (474)
Q Consensus 465 ~~l~~~~~~ 473 (474)
++|.+++++
T Consensus 430 ~rL~~~l~~ 438 (462)
T PLN02187 430 ERLKGFCTR 438 (462)
T ss_pred HHHHHHHHH
Confidence 999998864
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-25 Score=220.64 Aligned_cols=330 Identities=14% Similarity=0.094 Sum_probs=210.5
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~---~~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~ 168 (474)
|..++|+..| ++--..++.+.+++.+.+... ..|+ +..+++.++++++.+.++ +.+ .+++|+|+++++
T Consensus 30 ~~~~i~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i 106 (385)
T PRK09276 30 GVDVISLGIG---DPDLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGI 106 (385)
T ss_pred CCCEEEecCC---CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence 4456787777 322225788999999887652 2232 224677788888876543 344 588899999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
..+++. ....++.|++.+++|..+.. .....|..+..++.....++. -|++++++.+.. +++
T Consensus 107 ~~~~~~--~~~~gd~Vl~~~P~y~~~~~-~~~~~g~~~~~v~~~~~~g~~------------~d~~~l~~~~~~---~~~ 168 (385)
T PRK09276 107 AHIPLA--FVNPGDVVLVPDPGYPVYKI-GTIFAGGEPYFMPLKEENGFL------------PDLDAIPEDVAK---KAK 168 (385)
T ss_pred HHHHHH--hCCCCCEEEEcCCCCcChHH-HHHHcCCEEEEEecCCCCCCc------------CCHHHHHHhccc---cce
Confidence 999884 23456789999999977543 333444433322211111110 168888777652 567
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc--ccccc---CCCCceeehhhhcC-CCcc
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG--AQEYF---GVTPDLTTLGKIIG-GGLP 321 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~--~~~~~---g~~pdi~t~sK~l~-~G~~ 321 (474)
+|++++++|++|.+.+.++ +++|.++|++||++||+||+|..| ..+... ..+.. +....+.+|||.+| +|+|
T Consensus 169 ~v~l~~p~NPtG~~~~~~~-~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlR 247 (385)
T PRK09276 169 LMFINYPNNPTGAVADLEF-FEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWR 247 (385)
T ss_pred EEEEeCCCCCCCCCCCHHH-HHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchh
Confidence 7777766788998887666 999999999999999999999877 433211 11111 11223448999998 8999
Q ss_pred eEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee
Q 011959 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (474)
Q Consensus 322 iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (474)
+||+++++++++.+.... .....+.+++.+.++.++|+..+. +...+.++++.+.+.+.|++ .++....+.
T Consensus 248 iG~~i~~~~l~~~~~~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~ 320 (385)
T PRK09276 248 IGFAVGNADLIAGLGKVK---SNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRK----LGLEVEPPK 320 (385)
T ss_pred heeeeCCHHHHHHHHHHH---hhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccCCC
Confidence 999999999998886321 112334566777777777752111 22333444444555555544 343222223
Q ss_pred eceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHH
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
.|.++++.+... ....++.+.|+ ++||++.++. ..++|+++..+++++.+++++|.+
T Consensus 321 ~~~~~~v~~~~~-------------~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 321 ATFYVWAPVPKG-------------YTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKK 384 (385)
T ss_pred cceEEEEECCCC-------------CCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCCCHHHHHHHHHHHhh
Confidence 455567766321 01256777776 5799999862 246789888889999999988864
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-25 Score=220.53 Aligned_cols=336 Identities=16% Similarity=0.149 Sum_probs=220.3
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~---~~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~ 168 (474)
|++++||..+ ++.+..++.+.+++.+.+.... .|+ +..+++.++++++.+.++ ..+ ++++|+|+++++
T Consensus 28 ~~~~i~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l 104 (395)
T PRK08175 28 GEDIIDFSMG---NPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGL 104 (395)
T ss_pred CCCeEEcCCC---CCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence 4566788777 5666567778888887765422 232 234677888888876543 345 799999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
..+++. ....+++|++.+++|......+ ...|..+..++. ..+ ..+.++++++++...++++
T Consensus 105 ~~~~~~--~~~~gd~Vlv~~P~y~~~~~~~-~~~g~~~~~v~~--~~~-------------~~~~~~l~~~l~~~~~~~~ 166 (395)
T PRK08175 105 AHLMLA--TLDHGDTVLVPNPSYPIHIYGA-VIAGAQVRSVPL--VEG-------------VDFFNELERAIRESYPKPK 166 (395)
T ss_pred HHHHHH--hCCCCCEEEEcCCCCcchHHHH-HHcCCeEEEEec--ccC-------------CCcHHHHHHHHhhccCCce
Confidence 988774 2345678888888887654433 233332211111 000 0147888888875444677
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCC--CCc----eeehhhhcC-CCc
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV--TPD----LTTLGKIIG-GGL 320 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~--~pd----i~t~sK~l~-~G~ 320 (474)
+|+++.++|++|.+.+.++ +++|.++|++||++||+||+|..+ ..+.... ....+ ..| +.+|||.+| +|+
T Consensus 167 ~v~i~~p~NPtG~~~~~~~-~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~-~~~~~~~~~~~~i~~~S~SK~~g~pGl 244 (395)
T PRK08175 167 MMILGFPSNPTAQCVELEF-FEKVVALAKRYDVLVVHDLAYADIVYDGWKAP-SIMQVPGAKDVAVEFFTLSKSYNMAGW 244 (395)
T ss_pred EEEEeCCCCCCCCCCCHHH-HHHHHHHHHHcCcEEEEecchHhhccCCCCCc-chhcCCCcccCEEEEeeccccccCcch
Confidence 8887766788898887666 899999999999999999999877 4332111 11111 122 237999997 899
Q ss_pred ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe
Q 011959 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (474)
|+||+++++++++.+.+ ......++.+.+.+.++.++|+..+. +.+.+.++++.+.+.+.|++ +++....+
T Consensus 245 RiG~~~~~~~l~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~~~~~p 317 (395)
T PRK08175 245 RIGFMVGNPELVSALAR---IKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHE----AGWMVEMP 317 (395)
T ss_pred hheeeeCCHHHHHHHHH---HHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----cCCcccCC
Confidence 99999999999998763 22223456677788888777753211 22334444444555555544 34333334
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
..|+++++++.+.. . .....++++.++ ++||.+.|+. .+++|+++..+++.+.+++++|.+++
T Consensus 318 ~~g~~i~i~l~~~~-~---------~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l 387 (395)
T PRK08175 318 KASMYVWAKIPEPY-A---------AMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMF 387 (395)
T ss_pred CEEEEEEEECCccc-C---------CCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 56888888875321 0 001256777666 6799998862 23678888888999999999999988
Q ss_pred hh
Q 011959 472 RQ 473 (474)
Q Consensus 472 ~~ 473 (474)
++
T Consensus 388 ~~ 389 (395)
T PRK08175 388 RA 389 (395)
T ss_pred Hh
Confidence 65
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-25 Score=219.40 Aligned_cols=329 Identities=13% Similarity=0.122 Sum_probs=215.3
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC-C---CCeEEEeCCHHHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP-S---IEMVRFVNSGTEACMGV 171 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~---~~~~~~~~la~~l~~~~~-~---~~~v~~~~sGseA~~~a 171 (474)
.+|||..|. ..++ .++.+.+++.+.+... ..|+ +..++++++++++.++++ . .+++++++|+++++..+
T Consensus 30 ~~i~l~~g~--p~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~ 106 (384)
T PRK12414 30 DALNLSQGA--PNFA-PDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAA 106 (384)
T ss_pred CeEEcCCCC--CCCC-CCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHH
Confidence 467888774 2333 4888999998877653 2332 235778889999888765 2 25799999999999999
Q ss_pred HHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEE
Q 011959 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (474)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (474)
++. ...++++|++.+++|.++.. .....|..+..++... .+. . -|++.|++.++. ++++|+
T Consensus 107 ~~~--l~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~v~~~~-~~~---------~---~d~~~l~~~l~~---~~~~v~ 167 (384)
T PRK12414 107 ISA--LVHPGDEVIYFEPSFDSYAP-IVRLQGATPVAIKLSP-EDF---------R---VNWDEVAAAITP---RTRMII 167 (384)
T ss_pred HHH--hcCCCCEEEEeCCCccchHH-HHHHcCCEEEEEecCc-ccc---------c---cCHHHHHhhcCc---ccEEEE
Confidence 984 24566889999999876433 3333343322211110 010 0 178899888863 567777
Q ss_pred EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc--cccccCCCCcee---ehhhhcC-CCcceEE
Q 011959 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG--AQEYFGVTPDLT---TLGKIIG-GGLPVGA 324 (474)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~--~~~~~g~~pdi~---t~sK~l~-~G~~iG~ 324 (474)
++.++|++|.+.+..+ +++|.++|++||+++|+||+|..| ..+... ...+.+....++ +|||.++ +|+|+||
T Consensus 168 i~~p~NPTG~~~s~~~-~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~ 246 (384)
T PRK12414 168 VNTPHNPSATVFSAAD-LARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGY 246 (384)
T ss_pred EcCCCCCCCcCCCHHH-HHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEE
Confidence 7777788998887555 999999999999999999999877 433211 111122222333 7999998 8999999
Q ss_pred EEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeecee
Q 011959 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403 (474)
Q Consensus 325 ~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~ 403 (474)
+++++++++.+.. .....+++.+.+++.++.+.|+.-.. ....+.++++++.+.+.|++ +++....+..|.+
T Consensus 247 ~v~~~~l~~~l~~---~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~----~g~~~~~~~gg~~ 319 (384)
T PRK12414 247 CLAPAELMDEIRK---VHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAG----SRFELLPSEGSFF 319 (384)
T ss_pred EecCHHHHHHHHH---HHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHh----CCCeecCCCcceE
Confidence 9999999888763 22334677788898888877752111 12344555555556555554 3432222334455
Q ss_pred EEEEEecCCCcCcccccccchHHHHHHH-HHHHHCCeEecccC--------CcceEEecCCcHHHHHHHHHHHHH
Q 011959 404 FGFFFTEGPVYNFEDAKKSETTKFARFY-RGMLEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gv~v~~~~--------~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
+++.+.... +.. ..++. +.|.++||.+.|+. .+++|+++..+++++++++++|.+
T Consensus 320 ~~~~~~~~~----------~~~-~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 320 MLARFRHFS----------DES-DSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLVEGARRLCS 383 (384)
T ss_pred EEEcccccC----------CCC-HHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 555553210 000 13444 55668899998863 245889888899999999999864
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-25 Score=219.41 Aligned_cols=331 Identities=18% Similarity=0.137 Sum_probs=215.4
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVL 172 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~al 172 (474)
.++||..|. ..+. .++.+.+++.+.+... ..|+ +..++++.+++++.+.++ ..+++++|+|+++|+..++
T Consensus 30 ~~i~l~~g~--p~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~ 106 (384)
T PRK06348 30 DIIDLSLGD--PDLI-TDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLAL 106 (384)
T ss_pred CcEEcCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHH
Confidence 468888773 2233 4677877666655432 2333 234677788888876543 5789999999999999999
Q ss_pred HHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE
Q 011959 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
+.. ..+++.|++.+++|.++...+. ..|..+..++.....+. . -|+++|++.++. ++++|++
T Consensus 107 ~~~--~~~gd~vlv~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~---------~---~d~~~l~~~~~~---~~~~v~l 168 (384)
T PRK06348 107 QSI--LDPGDEVIIHEPYFTPYKDQIE-MVGGKPIILETYEEDGF---------Q---INVKKLEALITS---KTKAIIL 168 (384)
T ss_pred HHh--cCCCCEEEEeCCCCcchHHHHH-HcCCEEEEecCCcCcCC---------c---CCHHHHHHhhCc---CccEEEE
Confidence 842 3446788888888877544433 33432222111001111 0 178999988863 4566666
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccc-cccCCCCce---eehhhhcC-CCcceEEEE
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-EYFGVTPDL---TTLGKIIG-GGLPVGAYG 326 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~-~~~g~~pdi---~t~sK~l~-~G~~iG~~~ 326 (474)
+.++|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+..... ...+..+.+ .+|||.++ +|+|+||++
T Consensus 169 ~~p~NPtG~~~s~~~-~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v 247 (384)
T PRK06348 169 NSPNNPTGAVFSKET-LEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVI 247 (384)
T ss_pred eCCCCCCCcCCCHHH-HHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeee
Confidence 666788898886555 999999999999999999999988 43321111 111222233 37999999 899999999
Q ss_pred ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeE
Q 011959 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 404 (474)
Q Consensus 327 ~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~ 404 (474)
+++++++.+. ......+++.+++++.++..+|+..++ +.+.+.++++.+.+.+.|+++ . ++....+..|.++
T Consensus 248 ~~~~~~~~~~---~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~-~--~~~~~~p~gg~~~ 321 (384)
T PRK06348 248 APDYIIETAK---IINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESI-P--NLSLHPPKGSIYA 321 (384)
T ss_pred cCHHHHHHHH---HHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcC-C--CceeccCCeeEEE
Confidence 9999988876 233344677889999998888863221 233444455555555555542 1 2222223345566
Q ss_pred EEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHH
Q 011959 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~ 470 (474)
|+.+..... ...++++.|+ ++||.+.|+. ...+|+++..+++++++++++|.+.
T Consensus 322 ~~~~~~~~~------------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 322 FINIKKTGL------------SSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFNRIEKM 382 (384)
T ss_pred EEecccCCC------------CHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecCCHHHHHHHHHHHHhh
Confidence 777642110 1256777776 5699998763 2467888888999999999999764
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-25 Score=219.22 Aligned_cols=330 Identities=14% Similarity=0.109 Sum_probs=212.4
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~~---~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~ 168 (474)
|..++||..|. ..++ .++.+.+++.+.+... ..|+. ..+++.++++++.+.++ ..+ .|++|+|+++++
T Consensus 28 ~~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l 104 (383)
T TIGR03540 28 GVDVISLGIGD--PDLP-TPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGI 104 (383)
T ss_pred CCCeEEeCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHH
Confidence 44667777773 2333 4788999998877642 22322 24677888888876543 334 689999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
..+++. ....++.|++.+++|.++... ....|..+..++.....++ . -|++++++.+.. +++
T Consensus 105 ~~~~~~--~~~~gd~vlv~~P~y~~~~~~-~~~~G~~v~~v~~~~~~g~---------~---~d~~~l~~~~~~---~~~ 166 (383)
T TIGR03540 105 AHIPLA--FVNPGDIVLVPDPGYPVYRIG-TLFAGGEPYEMPLKEENGF---------L---PDFDAIPEDIAK---KAK 166 (383)
T ss_pred HHHHHH--hCCCCCEEEEeCCCCcchHHH-HHhcCCEEEEEecCcccCC---------c---cCHHHHHhhccc---cce
Confidence 999984 234567889989999875443 3344443332221111111 0 178888877753 567
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-cc-ccccCC---CCceeehhhhcC-CCcc
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GA-QEYFGV---TPDLTTLGKIIG-GGLP 321 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~-~~~~g~---~pdi~t~sK~l~-~G~~ 321 (474)
+|+++.++|++|.+.+.++ +++|.++|++||++||+||+|..+ ..+.. .. ....+. ...+.+|||.+| +|+|
T Consensus 167 ~v~i~~P~NPtG~~~~~~~-~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlR 245 (383)
T TIGR03540 167 LMFINYPNNPTGAVAPLKF-FKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWR 245 (383)
T ss_pred EEEEeCCCCCcCccCCHHH-HHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccce
Confidence 7777755788998887666 999999999999999999999877 43321 11 111111 122348999998 8999
Q ss_pred eEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee
Q 011959 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (474)
Q Consensus 322 iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (474)
+||+++++++++.+... ......+.+.+.+.++.++|+...+ ++..+.++++.+.+.+.|++ +++....+.
T Consensus 246 iG~~i~~~~l~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~~~~~~~ 318 (383)
T TIGR03540 246 IGMAVGNADLIAGLGKV---KTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKK----IGIDVEKPK 318 (383)
T ss_pred eeEEeCCHHHHHHHHHH---HHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh----CCCEecCCC
Confidence 99999999998887631 1122334566777777777753211 22333444444555555543 443332333
Q ss_pred eceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHH
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
.|.++++.+.+. ....++.+.|+ ++||.+.++. .+.+|+++..+++++++++++|.+
T Consensus 319 ~~~~~~~~l~~~-------------~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 319 ATFYVWVPVPEG-------------YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK 382 (383)
T ss_pred cceEEEEECCCC-------------CCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecCCHHHHHHHHHHHhh
Confidence 455677776421 11256777775 6799999862 246889888899999999988864
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=217.12 Aligned_cols=301 Identities=13% Similarity=0.141 Sum_probs=206.7
Q ss_pred ccCCC-CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcC-CcEEEEE
Q 011959 111 AIIGH-ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG-RERIIKF 187 (474)
Q Consensus 111 ~~lG~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~-~~~ii~~ 187 (474)
+|||. .||+|+++..+.+++. +++.++..+|.++++++++ ..+.+++++||++|+..++. ++.+ ++.|++.
T Consensus 28 ~ylgl~~~~~~~~~~~~~~~~~---~g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~---al~~~gd~Vli~ 101 (346)
T TIGR03576 28 DLTGLAGGFKIDEEDLELLETY---VGPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATIL---ALEPPGRKVVHY 101 (346)
T ss_pred ccccCCCChhHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHH---HhCCCCCEEEEC
Confidence 77888 5999999999998873 4577899999999999996 45899999999999999998 4544 4566653
Q ss_pred --eCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCC
Q 011959 188 --EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265 (474)
Q Consensus 188 --~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~ 265 (474)
+..+|......+...|.. . +.++|+++++. . +++++|++++ .+++|.+.+.
T Consensus 102 ~~d~p~~~s~~~~~~l~ga~-------------------~--~~~~~l~~l~~----~-~~~~lIiitg-~s~~G~v~~~ 154 (346)
T TIGR03576 102 LPEKPAHPSIPRSCKLAGAE-------------------Y--FESDELSELKK----I-DGTSLVVITG-STMDLKVVSE 154 (346)
T ss_pred CCCCCCchhHHHHHHHcCCE-------------------E--eccCCHHHHhh----C-cCceEEEEEC-CCCCCcccCH
Confidence 335666655555444431 1 12346665432 1 2456777776 4778888765
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCc--c-cCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCC
Q 011959 266 PDFLNAIRRITKENGALLIFDEVMTGF--R-LAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 340 (474)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~--r-~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~ 340 (474)
++ |++|.++|++||++||+||+|..+ . .+. +....++ +|++ ||||++ +|+|+||+++++++++.+.+...
T Consensus 155 ~~-L~~i~~la~~~~~~livDEAy~~~~~~~~~~-~~~~~~~--~divv~s~SKal-aG~r~G~v~~~~~li~~l~~~~~ 229 (346)
T TIGR03576 155 ED-LKRVIKQAKSKEAIVLVDDASGARVRRLYGQ-PPALDLG--ADLVVTSTDKLM-DGPRGGLLAGRKELVDKIKSVGE 229 (346)
T ss_pred HH-HHHHHHHHHHcCCEEEEECCccccccccCCC-CCHHHcC--CcEEEeccchhc-cccceEEEEeCHHHHHHHHHhhc
Confidence 55 999999999999999999999543 1 122 1222333 4544 799966 47899999999999998875332
Q ss_pred cccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccc
Q 011959 341 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (474)
Q Consensus 341 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (474)
.+ .++.+++.++++.++|+.+..+...+.++++.+.+++.+++ ..+. +..++|+++.+...
T Consensus 230 ~~---~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~----~~~~---~~~~~f~~~~~~~~--------- 290 (346)
T TIGR03576 230 QF---GLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDK----LNVE---RTPTGFVIKGVEEE--------- 290 (346)
T ss_pred Cc---ccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh----CCCC---cCCCeEEEEeCCCC---------
Confidence 22 33468889999999998654344566666776666666653 2221 22344656554210
Q ss_pred ccchHHHHHHHHHHHHCCeEecccC-----CcceEEecCCcHH---HHHHHHHHHHHHHh
Q 011959 421 KSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSD---DIQHTITAAEKVLR 472 (474)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~~~~~~t~e---~i~~~l~~l~~~~~ 472 (474)
+ ..+.+.+.|.++||++.|+. .+++|+++...++ +++.++++|++.++
T Consensus 291 --~--~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~~~al~~~~~ 346 (346)
T TIGR03576 291 --K--LIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAAKDAERIGDDYLVEAVKDSLK 346 (346)
T ss_pred --C--HHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEecChHHhcCHHHHHHHHHhccC
Confidence 0 11344566678899999853 3467888887766 89999999988653
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=231.10 Aligned_cols=341 Identities=11% Similarity=0.061 Sum_probs=212.1
Q ss_pred cCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~ 168 (474)
..|+.+|+|..|-. +++|. .++++++++.+.+.....|+. ..++++++++++..... ..++|++++|+++++
T Consensus 143 ~~g~~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal 221 (517)
T PRK13355 143 AAGTHILKLNIGNP-APFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELI 221 (517)
T ss_pred HcCCCeEEecCcCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHH
Confidence 35778899988722 34565 478899999888765443432 24566777777655432 468999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
..+++. ....++.|++.+++|..+...+ ...|..+..+......++ .-|++++++.+.. +++
T Consensus 222 ~~~~~~--l~~~Gd~Vli~~P~y~~y~~~~-~~~g~~~v~~~~~~~~~~------------~~d~~~l~~~~~~---~~k 283 (517)
T PRK13355 222 NLSMSA--LLDDGDEVLIPSPDYPLWTACV-NLAGGTAVHYRCDEQSEW------------YPDIDDIRSKITS---RTK 283 (517)
T ss_pred HHHHHH--hCCCCCEEEEcCCCCcCHHHHH-HHCCCEEEEeecCcccCC------------CCCHHHHHHhcCc---Cce
Confidence 999984 2345688999999998765433 333433222111100010 0178999988763 456
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCce-----eehhhhcC-CCcc
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL-----TTLGKIIG-GGLP 321 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi-----~t~sK~l~-~G~~ 321 (474)
+|++..++|++|.+.+.++ +++|.++|++||++||+||+|..| ..+.... ......+|+ -+|||.++ +|||
T Consensus 284 ~i~i~nP~NPTG~v~~~~~-l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~-s~~~~~~~~~vi~~~S~SK~~~~~G~R 361 (517)
T PRK13355 284 AIVIINPNNPTGALYPREV-LQQIVDIAREHQLIIFSDEIYDRLVMDGLEHT-SIASLAPDLFCVTFSGLSKSHMIAGYR 361 (517)
T ss_pred EEEEECCCCCCCcCcCHHH-HHHHHHHHHHcCcEEEEehhhhhhcCCCCCcc-cHHHhCCCCeEEEEecchhhccCcccc
Confidence 6655555788998887555 999999999999999999999888 5442211 111122442 26899997 7999
Q ss_pred eEEEEe--cHHH----HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHH---HHHHHHHHHHHHHHHHhhhc
Q 011959 322 VGAYGG--RRDI----MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYE---YLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 322 iG~~~~--~~~i----~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~---~~~~~~~~l~~~L~~~~~~~ 391 (474)
+||+++ ++++ ++.+.. .....++.|.+++.++.++|+.... +++.+ ++.++++++.+.|+ +.
T Consensus 362 iG~~i~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~----~~ 433 (517)
T PRK13355 362 IGWMILSGNKRIAKDYIEGLNM----LANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALN----AI 433 (517)
T ss_pred eEEEEeeCchhhHHHHHHHHHH----HhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHh----cC
Confidence 999984 4543 333321 1112345678888888888852111 12222 22233344444443 33
Q ss_pred CCeeEEeeecee-EEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------CcceEEecCCcHHHHHHHH
Q 011959 392 GHAICGGYISGM-FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTI 464 (474)
Q Consensus 392 ~~~~~v~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l 464 (474)
+......+.|.| +++.+..... +. .+ ....+.+.|.++||.+.|+. .+++|+++..++++|++++
T Consensus 434 ~g~~~~~p~g~fy~~~~l~~~~~-~~-----~~--~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~~~~~l~~a~ 505 (517)
T PRK13355 434 PGISAVKPKAAFYIFPKIDVKKF-NI-----HD--DEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAM 505 (517)
T ss_pred CCcccCCCCeeeEEEeecCcccC-CC-----CC--HHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCCCHHHHHHHH
Confidence 222233445555 4445532100 00 01 11234456678899998862 3467899989999999999
Q ss_pred HHHHHHHhh
Q 011959 465 TAAEKVLRQ 473 (474)
Q Consensus 465 ~~l~~~~~~ 473 (474)
++|.++++.
T Consensus 506 ~rl~~~~~~ 514 (517)
T PRK13355 506 DRLADFFSY 514 (517)
T ss_pred HHHHHHHHH
Confidence 999998864
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=220.96 Aligned_cols=351 Identities=17% Similarity=0.138 Sum_probs=207.3
Q ss_pred CCEEEeccCChhhccC--CC-CCHHHHHHHHHHHHhcC--CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHH
Q 011959 98 GNEYIDYVGSWGPAII--GH-ADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTE 166 (474)
Q Consensus 98 G~~~iD~~~~~~~~~l--G~-~~p~v~~a~~~~~~~~~--~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGse 166 (474)
|+.++++..| ++. +. .++.+.+++.+.+.+.. .|+ +..++++.+++++.+.++ .+++|++|+|+++
T Consensus 31 g~~~~~~~~G---~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~ 107 (433)
T PRK06855 31 GVKITWENIG---DPIAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGD 107 (433)
T ss_pred cccccccccC---CCcccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHH
Confidence 3344555444 332 33 57788888888775432 222 245778888888877643 5689999999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
|+..++. ....++.|++.+++|+++........|..+..++.....++ .-|+++|++.++.++ +
T Consensus 108 al~~~~~---l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~------------~~d~~~l~~~~~~~~-~ 171 (433)
T PRK06855 108 AIAKIYG---LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNW------------YPDLDDLENKVKYNP-S 171 (433)
T ss_pred HHHHHHH---hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCC------------CCCHHHHHHHHhcCC-C
Confidence 9988875 34567889999999998543222222322221111100111 017899999987532 3
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-c-ccccC--CCCceeehhhhcC-CCc
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-A-QEYFG--VTPDLTTLGKIIG-GGL 320 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~-~~~~g--~~pdi~t~sK~l~-~G~ 320 (474)
++++++..++|++|.+.+.++ +++|.++|++||++||+||+|..| ..+... . .+... ...-+.+|||.++ +||
T Consensus 172 ~~~i~l~~P~NPTG~~~s~~~-~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGl 250 (433)
T PRK06855 172 IAGILLINPDNPTGAVYPKEI-LREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGS 250 (433)
T ss_pred ceEEEEECCCCCCCcCCCHHH-HHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcc
Confidence 455554445788898887666 999999999999999999999988 544221 1 11111 0111237999998 899
Q ss_pred ceEEEEec-----H---HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc-
Q 011959 321 PVGAYGGR-----R---DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA- 391 (474)
Q Consensus 321 ~iG~~~~~-----~---~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~- 391 (474)
|+||++++ + ++++.+.. ... ...+.+.+++.++.++|+.-.-+++.+++++..+.-++.+.+.+.++
T Consensus 251 RiG~ii~p~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~ 326 (433)
T PRK06855 251 RCGWIEVYNADKDEVFKKYINSILN---AKM-IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVP 326 (433)
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHH---hhc-cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999872 2 23343321 111 23456788888888777521102223222222222223333333333
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccccc---cch------------HHHHHHH-HHHHHCCeEecccCC-----cceE
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKK---SET------------TKFARFY-RGMLEEGVYFAPSQF-----EAGF 450 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~---~~~------------~~~~~~~-~~l~~~Gv~v~~~~~-----~~~~ 450 (474)
++....+..|.++|+.+.+..... ..... ++. ....+++ ..+.++||.+.|+.. ..+|
T Consensus 327 ~~~~~~p~gg~~~w~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~R 405 (433)
T PRK06855 327 GLKVNRTNGAFYMTVVFEDGVLNN-KQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFR 405 (433)
T ss_pred CeeccCCCeeEEEeeccccccccc-cccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceE
Confidence 222223445677787774320000 00000 000 0123455 445678999998731 2578
Q ss_pred EecCC-cHHHHHHHHHHHHHHHhh
Q 011959 451 TSLAH-SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 451 ~~~~~-t~e~i~~~l~~l~~~~~~ 473 (474)
++++. ++++|++++++|.+++++
T Consensus 406 ls~~~~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 406 VTLLERDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred EEECCCcHHHHHHHHHHHHHHHHH
Confidence 88774 999999999999998865
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-25 Score=220.14 Aligned_cols=339 Identities=14% Similarity=0.066 Sum_probs=216.6
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGV 171 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~a 171 (474)
..+|||..|. ..++ .++.+.+++.+.+.... .|+ +..++++++++++.+.++ ..+++++++|+++|+..+
T Consensus 33 ~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 109 (391)
T PRK08361 33 ENVISLGIGE--PDFD-TPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLA 109 (391)
T ss_pred cCeEEcCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHH
Confidence 3568887774 2333 36889999888776532 232 234667777777765543 468999999999999999
Q ss_pred HHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEE
Q 011959 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (474)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (474)
++. ....++.|++.+++|.+.. ..+...|..+..++.....+. ..|++++++.++. ++++++
T Consensus 110 ~~~--l~~~g~~Vlv~~p~y~~~~-~~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~i~~---~~~~v~ 171 (391)
T PRK08361 110 FES--LLEEGDEVIIPDPAFVCYV-EDAKIAEAKPIRIPLREENEF------------QPDPDELLELITK---RTRMIV 171 (391)
T ss_pred HHH--hcCCCCEEEEcCCCCcccH-HHHHHcCCEEEEEecCCccCC------------CCCHHHHHHhccc---ccEEEE
Confidence 884 2345677888888887753 334444443332221110000 0178999888864 456666
Q ss_pred EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccccCCCCce--eehhhhcC-CCcceEEEE
Q 011959 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDL--TTLGKIIG-GGLPVGAYG 326 (474)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pdi--~t~sK~l~-~G~~iG~~~ 326 (474)
++.++|++|.+.+.++ +++|.++|++|+++||+||+|..| ..+.. .....+....++ .+|||.++ +|+|+||++
T Consensus 172 i~~p~NPtG~~~~~~~-~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~ 250 (391)
T PRK08361 172 INYPNNPTGATLDKEV-AKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVI 250 (391)
T ss_pred EeCCCCCCCcCcCHHH-HHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhc
Confidence 6666788998887655 899999999999999999999877 43321 111111111223 37999999 899999999
Q ss_pred ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc-CCeeEEeeeceeEE
Q 011959 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFG 405 (474)
Q Consensus 327 ~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~v~~~g~~~~ 405 (474)
+++++++.+.. .....+++.+.+.+.++..+|+.....+..+++++..+..++.+.+.+..+ ++....+..|.++|
T Consensus 251 ~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~ 327 (391)
T PRK08361 251 APEQVIKDMIK---LHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVF 327 (391)
T ss_pred cCHHHHHHHHH---HHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEE
Confidence 99999887752 222234566778888887777532112233444333333333333333333 22222233455677
Q ss_pred EEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 406 FFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+.+..... ...++.+.|+ ++||.+.|+. ..++|+++..+++++++++++|.++++++
T Consensus 328 ~~l~~~~~------------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~l~~~ 391 (391)
T PRK08361 328 ANIDETGM------------SSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKALEEL 391 (391)
T ss_pred EECCCCCC------------CHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhcC
Confidence 77642110 1246777776 5799998863 24678888889999999999999998764
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-25 Score=219.03 Aligned_cols=320 Identities=15% Similarity=0.082 Sum_probs=210.5
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEE-eCCHHHHHHHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRF-VNSGTEACMGVLR 173 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~-~~sGseA~~~al~ 173 (474)
.+++++|||..|. +++| .+|.+++++.+.+.....| +.....+|.+.++++++ ..+++++ ++|.++++..+++
T Consensus 31 ~~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~y--~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~ 105 (361)
T PRK00950 31 IDPESIIKLGSNE--NPLG-PSPKAVEAIEKELSKIHRY--PEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMR 105 (361)
T ss_pred CCccceEEccCCC--CCCC-CCHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHH
Confidence 4567899998874 4566 6889999998877653333 33334677777877775 4678888 6777788888887
Q ss_pred HhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011959 174 LARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (474)
Q Consensus 174 ~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (474)
. ...+++.|++.+++|..+.. .....|..+...+.....+ .|++++++.+.. ++++++++
T Consensus 106 ~--~~~~gd~vlv~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~--------------~~~~~l~~~~~~---~~~~v~~~ 165 (361)
T PRK00950 106 T--FIDPGDEVIIPTPTFSYYEI-SAKAHGAKPVYAKREEDFS--------------LDVDSVLNAITE---KTKVIFLC 165 (361)
T ss_pred H--hcCCCCEEEEcCCChHHHHH-HHHHcCCEEEEeecCCCCC--------------cCHHHHHHHhcc---CCCEEEEe
Confidence 4 23445778888888765432 3333344332211110001 178889887753 45666666
Q ss_pred cccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCcc-ccccCCCCceeehhhhcC-CCcceEEEEecHHH
Q 011959 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA-QEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDI 331 (474)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~-~~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i 331 (474)
.++|++|.+.+ .+++.++|+++|+++|+||+|.+|....... ...++-...+.+|||.+| +|+|+||+++++++
T Consensus 166 ~p~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~ 241 (361)
T PRK00950 166 TPNNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWL 241 (361)
T ss_pred CCCCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHHH
Confidence 66788999999 7789999999999999999998773111111 111111112238999998 89999999999999
Q ss_pred HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecC
Q 011959 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411 (474)
Q Consensus 332 ~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~ 411 (474)
++.+... ..+++.++++++++.++|+ +.+++++..+..+..++.|.+.+. + ...+..|.++++.+...
T Consensus 242 ~~~~~~~-----~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~l~---~-~~~~~~~~~i~~~~~~~ 309 (361)
T PRK00950 242 IDYYMRA-----KTPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYNELP---F-KVYPSEANFVLVDVTPM 309 (361)
T ss_pred HHHHHHh-----cCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhhcC---e-eECCCcceEEEEECCCC
Confidence 9887632 2245567888888777774 334444444444444544444322 1 11234567777776210
Q ss_pred CCcCcccccccchHHHHHHHHHHHHCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
...++++.|.++||++.++. ...+|+++. +.+++++++++|++++
T Consensus 310 --------------~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~-~~~~~~~l~~~L~~il 360 (361)
T PRK00950 310 --------------TAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG-TFEENERFLEILKEIV 360 (361)
T ss_pred --------------CHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC-CHHHHHHHHHHHHHHh
Confidence 12578889999999998742 235788876 7789999999999876
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=218.03 Aligned_cols=331 Identities=14% Similarity=0.100 Sum_probs=213.9
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~~---~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~ 168 (474)
|+.++||..+ ++.+..++.+.+++.+.+... ..|+. ..+++.++++++.+.++ ..+ .+++|+|+++|+
T Consensus 34 g~~~i~l~~g---~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al 110 (394)
T PRK05942 34 GLDLIDLGMG---NPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGL 110 (394)
T ss_pred CCCeEEcCCC---CCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHH
Confidence 4567888877 555555677888887777542 22321 24678888888876643 355 588999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
..++.. ....++.|++.+++|.+..... ...|..+..++.....++ . -|++++++.+.. +++
T Consensus 111 ~~~~~~--~~~~gd~Vlv~~P~y~~~~~~~-~~~g~~~~~v~~~~~~~~---------~---~d~~~l~~~~~~---~~k 172 (394)
T PRK05942 111 THLALA--YVNPGDVVLVPSPAYPAHFRGP-LIAGAQIYPIILKPENDW---------L---IDLSSIPEEVAQ---QAK 172 (394)
T ss_pred HHHHHH--hCCCCCEEEEcCCCCcchHHHH-HHcCCEEEEeecCCccCC---------c---cCHHHHHHhccc---cce
Confidence 999884 2455678999999998754433 333433222111100010 0 178888887752 567
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccc-ccc---CCCCceeehhhhcC-CCcc
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-EYF---GVTPDLTTLGKIIG-GGLP 321 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~-~~~---g~~pdi~t~sK~l~-~G~~ 321 (474)
+|++..++|++|.+.+.++ +++|.++|++||++||+||+|..| ..+.. ... +.. +....+.+|||.++ +|+|
T Consensus 173 ~i~l~~P~NPtG~~~s~~~-~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlR 251 (394)
T PRK05942 173 ILYFNYPSNPTTATAPREF-FEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWR 251 (394)
T ss_pred EEEEcCCCCCCCCcCCHHH-HHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhh
Confidence 7777766788998887666 999999999999999999999877 43321 111 111 11223447999997 8999
Q ss_pred eEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee
Q 011959 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (474)
Q Consensus 322 iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (474)
+||+++++++++.+.. ......++.+.+++.++.++|+..++ ++..++++++.+++.+.|++ .++....+.
T Consensus 252 iG~i~~~~~l~~~l~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~~~~~~~ 324 (394)
T PRK05942 252 VGFVVGNRHIIQGLRT---LKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGE----LGWNIPPTK 324 (394)
T ss_pred eeeeecCHHHHHHHHH---HHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH----CCCeecCCC
Confidence 9999999999998873 22222456677788888888863221 23444455555555555543 343322233
Q ss_pred eceeEEEEEecCCCcCcccccccchHHHHHHHHH-HHHCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHH
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG-MLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~ 470 (474)
.|.++|+.+.... + ..++... +.++||.+.++. .+++|+++..+.+.+.+++++|.++
T Consensus 325 ~~~f~~~~~~~~~----------~---~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 325 ATMYLWVPCPVGM----------G---STDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQA 389 (394)
T ss_pred eeeEEEEECCCCC----------C---HHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 4557777764210 0 1345544 457899998752 2467888877778888888887664
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-24 Score=214.83 Aligned_cols=333 Identities=15% Similarity=0.098 Sum_probs=214.9
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMG 170 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~---~~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~~~ 170 (474)
..++||..+. +.-..++.+.+++.+.++.. ..|+ +..+++.++++++.+.++ +.+ +|++|+|+++|+..
T Consensus 28 ~~~i~l~~~~---p~~~~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~ 104 (387)
T PRK07683 28 DNLISLTIGQ---PDFPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDI 104 (387)
T ss_pred CCeEEecCCC---CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 4567887773 22224688999999988753 2232 245777888888876543 456 89999999999999
Q ss_pred HHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEE
Q 011959 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (474)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (474)
+++. ....++.|++..++|.++... ....|..+..++.. ..++ . -|.+++++.+.. +++++
T Consensus 105 ~~~~--l~~~gd~Vl~~~p~y~~~~~~-~~~~g~~~~~~~~~-~~~~-----------~-~~~~~l~~~~~~---~~~~i 165 (387)
T PRK07683 105 AFRT--ILEPGTEVILPAPIYPGYEPI-IRLCGAKPVFIDTR-STGF-----------R-LTAEALENAITE---KTRCV 165 (387)
T ss_pred HHHH--hCCCCCEEEEcCCCccchHHH-HHHcCCEEEEeecC-cccC-----------C-CCHHHHHHhcCc---CceEE
Confidence 9885 234567888888888875433 33344433221110 0111 0 167888887763 45667
Q ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cccccCCCCce---eehhhhcC-CCcceEE
Q 011959 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDL---TTLGKIIG-GGLPVGA 324 (474)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pdi---~t~sK~l~-~G~~iG~ 324 (474)
++..++|++|.+.+..+ +++|.++|+++|++||+||+|..+ ..+... ..++.+...++ .+|||.++ +|+|+||
T Consensus 166 ~i~~p~NPtG~~~s~~~-~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~ 244 (387)
T PRK07683 166 VLPYPSNPTGVTLSKEE-LQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGF 244 (387)
T ss_pred EEeCCCCCCCcCCCHHH-HHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEE
Confidence 77666788998887666 999999999999999999999877 433221 12221222222 37999999 8999999
Q ss_pred EEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeece
Q 011959 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 402 (474)
Q Consensus 325 ~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~ 402 (474)
+++++++++.+.. .......+.+.+++.++.+.|+.... +..+++++++.+.+.+.|.+ .++....+..|.
T Consensus 245 i~~~~~l~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~ 317 (387)
T PRK07683 245 LFAPSYLAKHILK---VHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLIS----MGLDVEKPTGAF 317 (387)
T ss_pred EEcCHHHHHHHHH---HHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH----cCCcccCCCeeE
Confidence 9999999888763 11222344567788888777753211 22334444555555555544 343322333455
Q ss_pred eEEEEEecCCCcCcccccccchHHHHHHHHH-HHHCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRG-MLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+++..+..... ...++... +.++||.+.|+. .+++|+++..+++++.+++++|.+++++
T Consensus 318 ~~~~~~~~~~~------------~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 318 YLFPSIGHFTM------------SSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred EEEEecccCCC------------CHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 55555432110 01345544 567899998863 2467899888999999999999998764
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=218.93 Aligned_cols=325 Identities=11% Similarity=0.043 Sum_probs=210.4
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGV 171 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~a 171 (474)
|+.++||..|. .+++ .++.+.+++.+.......|. +..++++++++++.++++ ..++|++|+|+++|+..+
T Consensus 23 ~~~~i~l~~~~--p~~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~ 99 (374)
T PRK05839 23 EYKGLDLTIGE--PQFE-TPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNF 99 (374)
T ss_pred CCCeEEcCCCC--CCCC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHH
Confidence 78899998875 3345 46888888887664433343 235778888988888754 578999999999999888
Q ss_pred HHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEE
Q 011959 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (474)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (474)
++....-.+++.|++..++|..+...+ ...|..+..++.....++ .. |++.. .++ ++++|+
T Consensus 100 ~~~~~~~~~gd~vlv~~P~y~~~~~~~-~~~g~~v~~v~~~~~~~~---------~~---d~~~~--~~~----~~k~v~ 160 (374)
T PRK05839 100 PQFVLFDKQNPTIAYPNPFYQIYEGAA-IASRAKVLLMPLTKENDF---------TP---SLNEK--ELQ----EVDLVI 160 (374)
T ss_pred HHHHhcCCCCCEEEECCCCchhhHHHH-HhcCCEEEEeecccccCC---------cC---Ccchh--hhc----cccEEE
Confidence 773211134577888888887754443 344443333222111111 00 22221 222 466777
Q ss_pred EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-cccc---C--CCCcee---ehhhhcC-CCc
Q 011959 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYF---G--VTPDLT---TLGKIIG-GGL 320 (474)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~---g--~~pdi~---t~sK~l~-~G~ 320 (474)
+..++|++|.+.+.++ +++|.++|++||++||+||+|..| ..+.... .... + ..++++ +|||.++ +|+
T Consensus 161 i~nP~NPTG~~~s~~~-l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~Gl 239 (374)
T PRK05839 161 LNSPNNPTGRTLSLEE-LIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGL 239 (374)
T ss_pred EeCCCCCcCcccCHHH-HHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccc
Confidence 7666788998887666 999999999999999999999877 3222111 1100 0 112333 7999987 899
Q ss_pred ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeee
Q 011959 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (474)
|+||+++++++++.+.. ......++.+.+.+.++.+++. ++++.+++++..+..++.+.+.+ +.. .+..
T Consensus 240 RiG~ii~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l---~~~--~p~g 308 (374)
T PRK05839 240 RSGFIAGDASILKKYKA---YRTYLGCASPLPLQKAAAVAWL---DDEHAEFFRNIYAKNLKLAREIL---GIT--IPPA 308 (374)
T ss_pred eeEEEecCHHHHHHHHH---HHhhcCCCCChHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHhc---CCC--CCCe
Confidence 99999999999888763 2122234567777777776663 23444443333333333333322 221 4556
Q ss_pred ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC--------CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~--------~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
|.++|+.+.+ ..++.+.|++ +||.+.|+. .+++|+++..+++++++++++|.+++
T Consensus 309 g~fi~~~~~~----------------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~l 372 (374)
T PRK05839 309 TFYVWLPVDN----------------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYL 372 (374)
T ss_pred eEEEEEeCCC----------------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 7788877631 1467788875 899999852 24688988889999999999999887
Q ss_pred h
Q 011959 472 R 472 (474)
Q Consensus 472 ~ 472 (474)
+
T Consensus 373 ~ 373 (374)
T PRK05839 373 E 373 (374)
T ss_pred h
Confidence 5
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=219.28 Aligned_cols=338 Identities=14% Similarity=0.123 Sum_probs=216.5
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGV 171 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~a 171 (474)
..++||..+. +-...++.+.+++.+.+... ..|+. ...++.++++++.+.++ ..+++++++|+++|+..+
T Consensus 31 ~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~ 107 (393)
T PRK05764 31 RDVISLGAGE---PDFDTPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNA 107 (393)
T ss_pred CCEEEeCCCC---CCCCCCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHH
Confidence 3577888874 32335789999999888653 22322 34667777777766543 357899999999999999
Q ss_pred HHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEE
Q 011959 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (474)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (474)
++. ....++.|++.+++|.++.. .....|..+..++.....++ .-|++.+++.++. ++++|+
T Consensus 108 ~~~--~~~~gd~vl~~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~l~~---~~~~v~ 169 (393)
T PRK05764 108 FMA--LLDPGDEVIIPAPYWVSYPE-MVKLAGGVPVFVPTGEENGF------------KLTVEQLEAAITP---KTKALI 169 (393)
T ss_pred HHH--hcCCCCEEEecCCCCcchHH-HHHHcCCEEEEEecCcccCC------------cCCHHHHHHhhCc---cceEEE
Confidence 884 23456788888888876433 33333443322111100010 0168899888853 456666
Q ss_pred EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccc-cc-cCCCCc---eeehhhhcC-CCcceE
Q 011959 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-EY-FGVTPD---LTTLGKIIG-GGLPVG 323 (474)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~-~~-~g~~pd---i~t~sK~l~-~G~~iG 323 (474)
+..++|++|.+.+.++ +++|.++|++||+++|+||+|..+ ..+.. ... +. .+.... +.+|||.++ .|+|+|
T Consensus 170 ~~~p~NPtG~~~~~~~-~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG 248 (393)
T PRK05764 170 LNSPSNPTGAVYSPEE-LEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLG 248 (393)
T ss_pred EECCCCCCCcccCHHH-HHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeE
Confidence 6666777898877665 999999999999999999999877 43321 111 11 122222 236999999 899999
Q ss_pred EEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhc-CCeeEEeee
Q 011959 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYI 400 (474)
Q Consensus 324 ~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~v~~~ 400 (474)
|+++++++++.+.. .....+.+.+++++.++.+.|+...+ +.+.++++++.+.+++.|++ + ++....+..
T Consensus 249 ~i~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~g 321 (393)
T PRK05764 249 YAAGPKELIKAMSK---LQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNE----IPGLECPKPEG 321 (393)
T ss_pred EEecCHHHHHHHHH---HHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhh----CCCCcccCCCc
Confidence 99999999988863 22223456788888888888752111 23334444444555555543 3 322222333
Q ss_pred ceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
|.++++.+...... ......++.+.++ ++||.+.++. .+.+|+++.++++++++++++|.+++++
T Consensus 322 ~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~~~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 322 AFYVFPNVSKLLGK--------SITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYATSLEDLEEGLERIERFLES 391 (393)
T ss_pred ceEEEEeccccccc--------ccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 45666666431100 0001246777765 5799998863 2467999989999999999999999875
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=218.71 Aligned_cols=341 Identities=13% Similarity=0.075 Sum_probs=215.2
Q ss_pred CCEEEeccCChhhc--cCCCCCHHHHHHHHHHHHhcC--CCC---CCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPA--IIGHADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP--SIEMVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~--~lG~~~p~v~~a~~~~~~~~~--~~~---~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~ 168 (474)
|+.+++|..|...+ .++ .++.+.+++.+.+.... .|+ +..++++++++++..... ..++|++++|+++|+
T Consensus 30 ~~~~i~l~~g~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al 108 (401)
T TIGR01264 30 EKPMIKLSIGDPTVFGNLP-TDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAI 108 (401)
T ss_pred CCCeeecCCCCCCCcCCCC-CCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHH
Confidence 35678888773211 122 57889999988876532 232 223556667766654311 467899999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
..+++.. ...++.|++.+++|..+. ......|..+...+....... . -|++.+++.++. +++
T Consensus 109 ~~~~~~l--~~~gd~v~i~~P~y~~~~-~~~~~~g~~v~~~~~~~~~~~---------~---~d~~~l~~~~~~---~~~ 170 (401)
T TIGR01264 109 EMCIAAL--ANAGQNILVPRPGFPLYE-TLAESMGIEVKLYNLLPDKSW---------E---IDLKQLESLIDE---KTA 170 (401)
T ss_pred HHHHHHh--CCCCCEEEEeCCCChhHH-HHHHHcCCEEEEeecCCccCC---------C---CCHHHHHHHhcc---Cce
Confidence 9999842 235678898899887643 333444443322211100000 0 178899888764 356
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCc--e---eehhhhcC-CCcc
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD--L---TTLGKIIG-GGLP 321 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pd--i---~t~sK~l~-~G~~ 321 (474)
+|++..++|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+..+. ......++ + -+|||.++ +|+|
T Consensus 171 ~v~~~~p~NPtG~~~~~~~-~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~vi~~~SfSK~~~~~GlR 248 (401)
T TIGR01264 171 ALIVNNPSNPCGSVFSRQH-LEEILAVAERQCLPIIADEIYGDMVFSGATFE-PLASLSSTVPILSCGGLAKRWLVPGWR 248 (401)
T ss_pred EEEEcCCCCCCCCCCCHHH-HHHHHHHHHHCCCEEEEEhhhhhhccCCcccc-cHHHcCCCCcEEEEccCcccCCCccce
Confidence 6677666778898877655 999999999999999999999988 5442211 11122222 3 27999977 7999
Q ss_pred eEEEEecH------HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 322 VGAYGGRR------DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 322 iG~~~~~~------~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
+||+++++ ++++.+.. ... ..++.+++++.++.+.|+...+ +...+.++++.+.+.+.|+++ . +
T Consensus 249 iG~iv~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~-~--~ 321 (401)
T TIGR01264 249 LGWIIIHDRRGILRDIRDGLVK---LSQ-RILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAV-P--G 321 (401)
T ss_pred EEEEEecCcchhHHHHHHHHHH---Hhh-ccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhC-C--C
Confidence 99998863 34444431 111 2356688899988888863111 223344444445555555442 0 2
Q ss_pred CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC----CcceEEecCCcHHHHHHHHHHH
Q 011959 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAA 467 (474)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l 467 (474)
+....+..|+++++.+..... ++.....++.+.|+ ++||++.|+. .+++|+++..+++++++++++|
T Consensus 322 ~~~~~p~~g~f~~~~~~~~~~--------~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~~~~~l~~~l~rl 393 (401)
T TIGR01264 322 LRPVMPSGAMYMMVGIEMEHF--------PEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTVPVVMMEEACSRI 393 (401)
T ss_pred CcccCCCeeeEEEEEeccccc--------CCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcCCHHHHHHHHHHH
Confidence 222345678888888743100 00011246777776 7899998863 2467888888899999999999
Q ss_pred HHHHhhC
Q 011959 468 EKVLRQI 474 (474)
Q Consensus 468 ~~~~~~~ 474 (474)
.++++++
T Consensus 394 ~~~~~~~ 400 (401)
T TIGR01264 394 QEFCERH 400 (401)
T ss_pred HHHHhcc
Confidence 9998764
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=217.64 Aligned_cols=330 Identities=13% Similarity=0.036 Sum_probs=214.9
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhCC-----CC-CeEEEeCCHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP-----SI-EMVRFVNSGTE 166 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---~~~~~~~~la~~l~~~~~-----~~-~~v~~~~sGse 166 (474)
..|+.++||..|. ..++ .++.+++++.+.+.....|+ +..+++.++++++.+.++ +. ++|++|+|+++
T Consensus 25 ~~~~~~i~l~~~~--p~~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~ 101 (393)
T TIGR03538 25 PASKPPIALSIGE--PKHP-TPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTRE 101 (393)
T ss_pred hcCCCeEEecCCC--CCCC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHH
Confidence 4577788888874 2333 57889999998776433343 235678888888877643 34 47999999999
Q ss_pred HHHHHHHHhHhhcCCc--EEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC
Q 011959 167 ACMGVLRLARAFTGRE--RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (474)
Q Consensus 167 A~~~al~~ar~~~~~~--~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (474)
++..+++.. ...++ .|++.+++|.++.. .....|..+..++.....++. -|++++++.+.+
T Consensus 102 al~~~~~~l--~~~gd~~~vlv~~P~y~~~~~-~~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~~~~-- 164 (393)
T TIGR03538 102 ALFAFAQAV--INPGQAPLVVMPNPFYQIYEG-AALLAGAEPYFLNCTAENGFL------------PDFDAVPESVWR-- 164 (393)
T ss_pred HHHHHHHHH--cCCCCcceEEecCCCCcchHH-HHHhcCCeEEEeeccccCCCC------------CCHHHHHHHHhh--
Confidence 999999842 22333 37777888877543 333444433322211111110 178888887753
Q ss_pred CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC--Ccc----ccccCC--CCcee---eh
Q 011959 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGA----QEYFGV--TPDLT---TL 312 (474)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~--~~~----~~~~g~--~pdi~---t~ 312 (474)
++++|+++.++|++|.+.+.++ +++|.++|++|+++||+||+|..+ ..+. ... ....+. .+.++ +|
T Consensus 165 -~~k~i~l~~p~NPtG~~~s~~~-~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 242 (393)
T TIGR03538 165 -RCQLLFVCSPGNPTGAVLSLDT-LKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSL 242 (393)
T ss_pred -cceEEEEeCCCCCcCcccCHHH-HHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecc
Confidence 4677777666788998887665 999999999999999999999877 4321 111 111111 12333 79
Q ss_pred hhhcC-CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 313 GKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 313 sK~l~-~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
||.++ +|+|+||+++++++++.+.. .....+++.+++.+.++.+++..-+. ....+.++++.+.+.+.|++.
T Consensus 243 SK~~~~~GlRvG~~i~~~~l~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~--- 316 (393)
T TIGR03538 243 SKRSNLPGLRSGFVAGDAEILKAFLR---YRTYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV--- 316 (393)
T ss_pred hhhcCCcccceEEEecCHHHHHHHHH---HHHhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 99987 79999999999999888763 22223456788888888777642100 223334444455555555442
Q ss_pred cCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------------CcceEEecCCcH
Q 011959 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------------FEAGFTSLAHSS 457 (474)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------------~~~~~~~~~~t~ 457 (474)
+....+..|.++|+.+.. + ..++.+.|+ ++||.+.|+. .+++|+++..++
T Consensus 317 --~~~~~p~gg~f~~~~~~~------------~---~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~ 379 (393)
T TIGR03538 317 --LDLELPDAGFYLWPKVPG------------D---DEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPL 379 (393)
T ss_pred --CcccCCCeeEEEEEECCC------------C---HHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCH
Confidence 122235567788887631 0 146777776 5799997763 235788888899
Q ss_pred HHHHHHHHHHHHH
Q 011959 458 DDIQHTITAAEKV 470 (474)
Q Consensus 458 e~i~~~l~~l~~~ 470 (474)
+++++++++|.++
T Consensus 380 ~~l~~~l~~l~~~ 392 (393)
T TIGR03538 380 EECVEAAERIRSF 392 (393)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=218.57 Aligned_cols=342 Identities=14% Similarity=0.050 Sum_probs=212.9
Q ss_pred CCEEEeccCChhhc-cCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011959 98 GNEYIDYVGSWGPA-IIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (474)
Q Consensus 98 G~~~iD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~ 169 (474)
|..+||+..|.... .++ .++.+.+++.+.+.... .|+ +..++++.+++++...++ +.++|++++|+++|+.
T Consensus 29 ~~~~i~l~~g~p~~~~~~-p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 107 (398)
T PRK08363 29 GIKVIRLNIGDPVKFDFQ-PPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQ 107 (398)
T ss_pred CCCeEEEeCCCCCcCCCC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence 66889998884321 233 58899999998876532 232 234566777777665543 4679999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (474)
.+++. ....++.|++.+++|.++...+ ...|............++ . -|++.+++.+.. ++++
T Consensus 108 ~~~~~--~~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~v~~~~~~~~~~---------~---~d~~~l~~~~~~---~~~~ 169 (398)
T PRK08363 108 LIFGA--LLDPGDEILIPGPSYPPYTGLV-KFYGGVPVEYRTIEEEGW---------Q---PDIDDIRKKITE---KTKA 169 (398)
T ss_pred HHHHH--hCCCCCEEEEcCCCCcchHHHH-HHcCCEEEEeccccccCC---------c---CCHHHHHhhCCc---ceEE
Confidence 99984 2445678888888887764433 333322111100000111 0 178888887753 4566
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcC-CCcceEE
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGA 324 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~ 324 (474)
|++..++|++|.+.+.++ +++|.++|++||++||+||+|..+ ..+.......+.-..+++ +|||.++ +|+|+||
T Consensus 170 v~l~~p~NPtG~~~~~~~-~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ 248 (398)
T PRK08363 170 IAVINPNNPTGALYEKKT-LKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGY 248 (398)
T ss_pred EEEECCCCCCCcCcCHHH-HHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEE
Confidence 666666778898887666 999999999999999999999877 433221111111122333 7999976 8999999
Q ss_pred EEe--cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeee
Q 011959 325 YGG--RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (474)
Q Consensus 325 ~~~--~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (474)
+++ ++++++.+..........+++.+.+++.++.++|+...+ .+..++++++.+.+.+.|++ ++.....++.
T Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~----~~~~~~~~p~ 324 (398)
T PRK08363 249 IYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNE----IPGISTTKPQ 324 (398)
T ss_pred EEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhc----CCCCEecCCC
Confidence 986 666665554210011112456788888888888853111 23334444555555555443 3222223344
Q ss_pred cee-EEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 401 SGM-FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 401 g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
|.+ +++.+..... .+ ....+.+.|.++||.+.|+. ..++|+++..+++++++++++|.+++++
T Consensus 325 g~~~~~~~l~~~~~--------~~--~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 325 GAFYIFPRIEEGPW--------KD--DKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEFMRE 394 (398)
T ss_pred eEEEEEEEeccCCC--------CC--HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 444 4445532100 00 11233455678999998863 2357888888999999999999998764
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-24 Score=215.32 Aligned_cols=340 Identities=15% Similarity=0.084 Sum_probs=216.0
Q ss_pred CCCEEEeccCChhhccC----CCCCHHHHHHHHHHHHhc--CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCH
Q 011959 97 DGNEYIDYVGSWGPAII----GHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSG 164 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~l----G~~~p~v~~a~~~~~~~~--~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sG 164 (474)
.|+.+|+|..| ++. -..++.+++++.+.+... ..|+ +..++++++++++...++ ..++|++++|+
T Consensus 29 ~~~~~i~l~~G---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~ 105 (409)
T PLN02656 29 NGKRVISLGMG---DPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGC 105 (409)
T ss_pred cCCeeeecCCC---CCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCCh
Confidence 57788999888 443 346899999999988763 2332 234677778888776543 46799999999
Q ss_pred HHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC
Q 011959 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (474)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (474)
++|+..++... ...++.|++.+++|..+ .......|..+..++.....+. . -|++++++.++.
T Consensus 106 ~~al~~~~~~l--~~~gd~Vlv~~p~y~~~-~~~~~~~g~~~~~i~~~~~~~~---------~---~d~~~l~~~~~~-- 168 (409)
T PLN02656 106 TQAIDVALSML--ARPGANILLPRPGFPIY-ELCAAFRHLEVRYVDLLPEKGW---------E---VDLDAVEALADQ-- 168 (409)
T ss_pred HHHHHHHHHHH--hCCCCeEEEeCCCCCcH-HHHHHHcCCEEEEEeCCCcCCC---------C---CCHHHHHHHhcc--
Confidence 99999999842 34567888888888654 3333334443322221101111 0 178899888763
Q ss_pred CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cccccCCCCce---eehhhhcC-C
Q 011959 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDL---TTLGKIIG-G 318 (474)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pdi---~t~sK~l~-~ 318 (474)
+++++++..++|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+..+ ....++-...+ -+|||.++ +
T Consensus 169 -~~~~v~l~~P~NPtG~~~s~~~-~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~p 246 (409)
T PLN02656 169 -NTVALVIINPGNPCGNVYSYQH-LKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVP 246 (409)
T ss_pred -CceEEEEECCCCCCCCCCCHHH-HHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCc
Confidence 3444444444677888876555 999999999999999999999988 544321 11112211223 37999977 8
Q ss_pred CcceEEEEec--------HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHH
Q 011959 319 GLPVGAYGGR--------RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 319 G~~iG~~~~~--------~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~ 387 (474)
|||+||++++ +++++.+.. ... ...+.+.+++.++.++|+...+ ....+.++++.+.+.+.|++
T Consensus 247 GlRiG~~i~~~~~~~~~~~~~~~~~~~---~~~-~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~- 321 (409)
T PLN02656 247 GWRLGWFVTTDPSGSFRDPKIVERIKK---YFD-ILGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKE- 321 (409)
T ss_pred ceeEEEEEEeCcccccccHHHHHHHHH---HHh-hhcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 9999999983 577777752 111 1234678889998888863111 22333444444444444443
Q ss_pred hhhcCCee--EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHH
Q 011959 388 GKKAGHAI--CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQ 461 (474)
Q Consensus 388 ~~~~~~~~--~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~ 461 (474)
++... ..+..|+++|+.+........ . .....+.+.|.++||.+.|+. .+++|+++..++++++
T Consensus 322 ---~~~~~~~~~p~gg~~~w~~l~~~~~~~~-----~--~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~~~e~l~ 391 (409)
T PLN02656 322 ---IPCITCPHKPEGSMAVMVKLNLSLLEDI-----S--DDIDFCFKLAREESVIILPGTAVGLKNWLRITFAADPSSLE 391 (409)
T ss_pred ---CCCCcCCcCCCeEEEEEEecchhhcCCC-----C--CHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCCCHHHHH
Confidence 33211 123456777777642100000 0 011234567778999999873 2468898888999999
Q ss_pred HHHHHHHHHHhh
Q 011959 462 HTITAAEKVLRQ 473 (474)
Q Consensus 462 ~~l~~l~~~~~~ 473 (474)
+++++|++++..
T Consensus 392 eal~rl~~~~~~ 403 (409)
T PLN02656 392 EALGRIKSFYLR 403 (409)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=215.80 Aligned_cols=333 Identities=17% Similarity=0.172 Sum_probs=216.7
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGV 171 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~---~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~~~a 171 (474)
..+||..|... ++ .++.+.+++.+.+... ..|+. ..++++.+++++.+.++ .++ +|++|+|+++|+..+
T Consensus 27 ~~i~l~~g~p~--~~-~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~ 103 (387)
T PRK08912 27 GAINLGQGFPD--DP-GPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAA 103 (387)
T ss_pred CeEEccCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHH
Confidence 56888888532 23 4788888888877543 22322 34677888888876543 456 899999999999988
Q ss_pred HHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCC-CCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEE
Q 011959 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (474)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (474)
+.. ...+++.|++.+++|..+.. .+...|..+..++... ..++ |++++++.+.. +++++
T Consensus 104 ~~~--~~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~~~--------------~~~~l~~~~~~---~~~~v 163 (387)
T PRK08912 104 LLA--LVEPGDEVVLFQPLYDAYLP-LIRRAGGVPRLVRLEPPHWRL--------------PRAALAAAFSP---RTKAV 163 (387)
T ss_pred HHH--hcCCCCEEEEeCCCchhhHH-HHHHcCCEEEEEecCcccCcC--------------CHHHHHHHhCc---cceEE
Confidence 884 23456788888888876543 3344444332221110 0011 78899888753 45666
Q ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc--cccccCCCCc-e--eehhhhcC-CCcceE
Q 011959 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG--AQEYFGVTPD-L--TTLGKIIG-GGLPVG 323 (474)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~--~~~~~g~~pd-i--~t~sK~l~-~G~~iG 323 (474)
++..++|++|.+.+.++ +++|.++|++|+++||+||+|..| ..+..+ ..+..+.... + .+|||.++ +|+|+|
T Consensus 164 ~l~~p~NPtG~~~s~~~-~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG 242 (387)
T PRK08912 164 LLNNPLNPAGKVFPREE-LALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVG 242 (387)
T ss_pred EEeCCCCCcCcccCHHH-HHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeE
Confidence 66666788998887666 999999999999999999999877 433211 1122222222 2 37999999 899999
Q ss_pred EEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeec
Q 011959 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 401 (474)
Q Consensus 324 ~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g 401 (474)
|+++++++++.+.. .....+++.++..+.++.++|....+ +++.++++++.+.+.+.|++ +++....+..|
T Consensus 243 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~g~ 315 (387)
T PRK08912 243 FVCAAPPLLRVLAK---AHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRR----IGFPVLPSQGT 315 (387)
T ss_pred EEecCHHHHHHHHH---HHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccCCCcc
Confidence 99999999988763 22223456677777777777642111 23445555555555555554 34322222345
Q ss_pred eeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC--------CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~--------~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
.++++.+..... .....++++.|+ ++||++.|+. .+++|+++..+++++++++++|.++++
T Consensus 316 ~~l~~~l~~~~~----------~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~~~~l~~~l~rl~~~l~ 385 (387)
T PRK08912 316 YFLTVDLAPLGL----------AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAARR 385 (387)
T ss_pred eEEEecccccCC----------CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 566766643100 011256777776 5799998852 246789888899999999999999876
Q ss_pred h
Q 011959 473 Q 473 (474)
Q Consensus 473 ~ 473 (474)
+
T Consensus 386 ~ 386 (387)
T PRK08912 386 R 386 (387)
T ss_pred c
Confidence 4
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=216.23 Aligned_cols=341 Identities=13% Similarity=0.093 Sum_probs=214.7
Q ss_pred EcCCCEEEeccCChhhccC--C--CCCHHHHHHHHHHHHhc--CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeC
Q 011959 95 DIDGNEYIDYVGSWGPAII--G--HADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SIEMVRFVN 162 (474)
Q Consensus 95 d~dG~~~iD~~~~~~~~~l--G--~~~p~v~~a~~~~~~~~--~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~ 162 (474)
..+|+.+|+|..| ++. + -.+|.+.+++.+.+.+. ..|+ +..++++.+++++.+.++ ..++|++|+
T Consensus 28 ~~~~~~~i~l~~G---~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~ 104 (409)
T PLN00143 28 EDDHRLAISFGFG---DPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTL 104 (409)
T ss_pred cCCCCceeeCCCC---CCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEec
Confidence 3457788898888 443 2 26888999999988753 2232 345678888888876643 568999999
Q ss_pred CHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhc
Q 011959 163 SGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (474)
Q Consensus 163 sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (474)
|+++++..+++. ....++.|++.+++|+++.. .....|..+...+.....++ . -|+++|+++++.
T Consensus 105 G~~~al~~~~~~--l~~~gd~v~v~~P~y~~~~~-~~~~~g~~~~~~~~~~~~~~---------~---~d~~~l~~~~~~ 169 (409)
T PLN00143 105 GCKHAAEIIIKV--LARPEANILLPRPGFPDVET-YAIFHHLEIRHFDLLPEKGW---------E---VDLDAVEAIADE 169 (409)
T ss_pred ChHHHHHHHHHH--HcCCCCEEEEcCCCCcCHHH-HHHHcCCEEEEEeccCCCCC---------c---CCHHHHHHhccc
Confidence 999999999984 23456789999999987543 33333433222111000111 0 178999888753
Q ss_pred CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cccccCCCCcee---ehhhhcC
Q 011959 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLT---TLGKIIG 317 (474)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pdi~---t~sK~l~ 317 (474)
+ ..+.++++| +|++|.+.+.++ +++|.++|++|+++||+||+|.+| ..+..+ ....+.-.+.++ +|||.++
T Consensus 170 ~--~~~~~~~nP-~NPTG~~~s~~~-~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~ 245 (409)
T PLN00143 170 N--TIAMVIINP-GNPCGSVYSYEH-LNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWM 245 (409)
T ss_pred C--CEEEEEECC-CCCCCCccCHHH-HHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcC
Confidence 2 344555555 678898887666 999999999999999999999988 544221 112222122233 7999977
Q ss_pred -CCcceEEEEe--cHHHH------HhhcCCCCcccccCCCCChHHHHHHHHHHHHh-cC--CCHHHHHHHHHHHHHHHHH
Q 011959 318 -GGLPVGAYGG--RRDIM------EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE--PGTYEYLNKITGELTQGII 385 (474)
Q Consensus 318 -~G~~iG~~~~--~~~i~------~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~-~~--~~~~~~~~~~~~~l~~~L~ 385 (474)
+|+|+||+++ ++.++ +.+. .......+ .+.+++.++.++|+.. .. ++..++++++.+.+.+.|.
T Consensus 246 ~pGlRvG~~v~~~p~~~~~~~~~~~~~~---~~~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 321 (409)
T PLN00143 246 IPGWGLGWLVTCDPSGLLQICEIADSIK---KALNPAPF-PPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLK 321 (409)
T ss_pred CCccceEEEEeeCchhhhhhHHHHHHHH---HHHhccCC-CCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999988 33332 2222 11111222 4678888888777521 00 2334444444444444444
Q ss_pred HHhhhcCCee--EEeeeceeEEEEEecCCCcCcccccccchHHHHHHH-HHHHHCCeEecccC----CcceEEecCCcHH
Q 011959 386 DAGKKAGHAI--CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY-RGMLEEGVYFAPSQ----FEAGFTSLAHSSD 458 (474)
Q Consensus 386 ~~~~~~~~~~--~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gv~v~~~~----~~~~~~~~~~t~e 458 (474)
+ .+... ..+..|+++|+.+...... +.....++. +.+.++||.+.|+. .+++|+++..+++
T Consensus 322 ~----~~~~~~~~~p~gg~f~w~~l~~~~~~--------~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~~~~ 389 (409)
T PLN00143 322 E----IPCIMCPQKAEGAFFALVKLNLLLLE--------DIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQS 389 (409)
T ss_pred c----CCCCCCCCCCCeeEEEEEecchhhcC--------CCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcCCHH
Confidence 3 33221 2234677888877421000 000113444 45578899999874 3468999888999
Q ss_pred HHHHHHHHHHHHHhh
Q 011959 459 DIQHTITAAEKVLRQ 473 (474)
Q Consensus 459 ~i~~~l~~l~~~~~~ 473 (474)
++++++++|.+++++
T Consensus 390 ~l~~al~rl~~~l~~ 404 (409)
T PLN00143 390 SLEDGLGRLKSFCGR 404 (409)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=217.42 Aligned_cols=340 Identities=14% Similarity=0.082 Sum_probs=211.0
Q ss_pred CCEEEeccCChhhccCC--CCCHHHHHHHHHHHHhcC--CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHH
Q 011959 98 GNEYIDYVGSWGPAIIG--HADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 167 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~--~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA 167 (474)
|+.+|++..|-. ..++ -.++++.+++.+.+..+. .|+ +..+++..+++++.+.++ ..++|++|+|+++|
T Consensus 51 ~~~~i~l~~G~P-~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~a 129 (430)
T PLN00145 51 PRPVLPLGHGDP-SAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQA 129 (430)
T ss_pred CCCeeeCCCCCC-CCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHH
Confidence 677888887722 1122 247899999999887642 232 234667777777766543 46899999999999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
+..+++.. ..+++.|++.+++|..+.. .....|..+..+++....++ . -|+++++++++. ++
T Consensus 130 l~l~~~~l--~~~Gd~Vlv~~P~y~~y~~-~~~~~g~~~~~~~~~~~~~~---------~---~d~~~l~~~~~~---~~ 191 (430)
T PLN00145 130 IEIIMSVL--AQPGANILLPRPGYPLYEA-RAVFSGLEVRHFDLLPERGW---------E---VDLEGVEALADE---NT 191 (430)
T ss_pred HHHHHHHh--cCCCCEEEEcCCCCccHHH-HHHHcCCEEEEeeCCcccCC---------c---CCHHHHHHHhCc---Cc
Confidence 99999842 2456789999999887543 33333443322221111110 0 188999988864 34
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cccccCCCCcee---ehhhhcC-CCcc
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLT---TLGKIIG-GGLP 321 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pdi~---t~sK~l~-~G~~ 321 (474)
+++++..++|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+..+ ....++-...++ +|||.++ +|||
T Consensus 192 ~~i~i~~P~NPtG~v~~~~~-l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~R 270 (430)
T PLN00145 192 VAMVIINPNNPCGSVYSYEH-LAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWR 270 (430)
T ss_pred eEEEEeCCCCCCCCCCCHHH-HHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCee
Confidence 44554444678898887666 999999999999999999999887 443221 111122122233 7999977 8999
Q ss_pred eEEEEe--cHHHHH------hhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 322 VGAYGG--RRDIME------MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 322 iG~~~~--~~~i~~------~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
+||+++ ++.+++ .+. .. .....+.+.+.+.++..+|+.-.+ ++.++.++++.+.+.+.|++
T Consensus 271 lG~iv~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~---- 342 (430)
T PLN00145 271 LGWIATCDPNGILKETKVVDSIR---NY-LNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKE---- 342 (430)
T ss_pred EEEEEEecchhhhhhhHHHHHHH---HH-hcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 999986 444433 222 11 112224567888888887763111 22333444444444444433
Q ss_pred cCCee-E-EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC----CcceEEecCCcHHHHHHH
Q 011959 391 AGHAI-C-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHT 463 (474)
Q Consensus 391 ~~~~~-~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~ 463 (474)
++... . .+..|+++++.+....... .....+++..++ ++||++.|+. .+++|+++..++++++++
T Consensus 343 ~~g~~~~~~P~ga~y~~v~l~~~~~~~--------~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~~~~~l~~a 414 (430)
T PLN00145 343 IKCITCPHKPEGSMFVMVKLDLSCLSG--------IKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAIDPPSLEDG 414 (430)
T ss_pred CCCCCCCcCCCeeeEEEeccChhhcCC--------CCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHH
Confidence 32222 2 2455666777663210000 001245665554 6799999863 346789888899999999
Q ss_pred HHHHHHHHhh
Q 011959 464 ITAAEKVLRQ 473 (474)
Q Consensus 464 l~~l~~~~~~ 473 (474)
+++|.+++.+
T Consensus 415 l~rl~~~~~~ 424 (430)
T PLN00145 415 LERLKSFCLR 424 (430)
T ss_pred HHHHHHHHHH
Confidence 9999998864
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=217.03 Aligned_cols=328 Identities=13% Similarity=0.127 Sum_probs=211.9
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhc---CCCC--CCCHHHHHHHHHHHhhC-----CCCCeEEEeCCHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG---TSFG--APCLLENVLAEMVISAV-----PSIEMVRFVNSGTEAC 168 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~--~~~~~~~~la~~l~~~~-----~~~~~v~~~~sGseA~ 168 (474)
..++|+..|. ++++ .+|.+++++.+.+..+ ..|. +..+++.++++++.+.+ -..++|++|+|+++++
T Consensus 28 ~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al 104 (374)
T PRK02610 28 IQLDRLDTNE--FPYD-LPPDLKQKLAWLYQQGIESNRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELI 104 (374)
T ss_pred cceeEecCCC--CCCC-CCHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHH
Confidence 4588888874 3333 6789999999877653 1221 12345566666665442 1467899999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCC-CCCCCCCCCCceEEccCCCHHHHHHHHhcC-CCC
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SPGVPKGATYETLTAPFNDVSALENLFENN-KGE 246 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~ 246 (474)
..++... ...+.+.|++.+++|.++. ......|..+..++... ..++ |+++|++.+++. ..+
T Consensus 105 ~~~~~~~-~~~g~~~Vlv~~P~y~~~~-~~~~~~g~~~~~~~~~~~~~~~--------------d~~~l~~~~~~~~~~~ 168 (374)
T PRK02610 105 RSLLIAT-CLGGEGSILVAEPTFSMYG-ILAQTLGIPVVRVGRDPETFEI--------------DLAAAQSAIEQTQNPP 168 (374)
T ss_pred HHHHHHH-cCCCCCeEEEcCCChHHHH-HHHHHcCCEEEEecCCcccCCC--------------CHHHHHHHHHhhcCCC
Confidence 8777631 2233347999999997754 33344454433222110 0111 789999888641 125
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCce---eehhhhcC-CCcc
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL---TTLGKIIG-GGLP 321 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi---~t~sK~l~-~G~~ 321 (474)
+++|++.+++|++|.+.+.++ +++|.++| ++++||+||+|..| ..... ....-.+++ -+|||.+| +|+|
T Consensus 169 ~k~i~l~~P~NPTG~~~s~~~-l~~l~~~~--~~~~iI~De~Y~~~~~~~~~---~~~~~~~~~ivi~SfSK~~g~~GlR 242 (374)
T PRK02610 169 VRVVFVVHPNSPTGNPLTAAE-LEWLRSLP--EDILVVIDEAYFEFSQTTLV---GELAQHPNWVILRTFSKAFRLAAHR 242 (374)
T ss_pred ceEEEEeCCCCCCCCCCCHHH-HHHHHhcc--CCcEEEEeccccccCccchH---HHHhcCCCEEEEEecchhccCcccc
Confidence 777777677888999988766 88888877 49999999999877 32111 111112333 37999997 8999
Q ss_pred eEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeec
Q 011959 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 401 (474)
Q Consensus 322 iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g 401 (474)
+||+++++++++.+.... ..++.+.+++.++.++|+.. +.+.+++++..+. ++.+.+.+..++.....+..|
T Consensus 243 iG~~v~~~~l~~~l~~~~-----~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~~p~~g 314 (374)
T PRK02610 243 VGYAIGHPELIAVLEKVR-----LPYNLPSFSQLAAQLALEHR--QELLAAIPEILQE-RDRLYQALQELPQLRVWPSAA 314 (374)
T ss_pred eeeeecCHHHHHHHHHhc-----CCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHH-HHHHHHHHHhCCCcEeCCCcc
Confidence 999999999998887421 23566888888888777532 2333333333322 333333333332222235667
Q ss_pred eeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
.++++.+... .....+++.|.++||.+.+. .+++|+++.. .+++++++++|+++++.+
T Consensus 315 ~f~~~~l~~~-------------~~~~~~~~~l~~~gi~v~~~-~~~lRls~~~-~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 315 NFLYLRLSQD-------------AALAALHQALKAQGTLVRHT-GGGLRITIGT-PEENQRTLERLQAALTQL 372 (374)
T ss_pred eEEEEeCCCC-------------CCHHHHHHHHHHCCEEEEeC-CCeEEEeCCC-HHHHHHHHHHHHHHHhhc
Confidence 7888776421 11256788889999999864 3568898775 567899999999988754
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=215.92 Aligned_cols=351 Identities=12% Similarity=0.029 Sum_probs=221.9
Q ss_pred CEEEEcCCCEEEeccCChhhcc-CCCCCHHHHHHHHHHHHhc--CCCC---CCCHHHHHHHHHHHhhC--------C-CC
Q 011959 91 SHMWDIDGNEYIDYVGSWGPAI-IGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAV--------P-SI 155 (474)
Q Consensus 91 ~~~~d~dG~~~iD~~~~~~~~~-lG~~~p~v~~a~~~~~~~~--~~~~---~~~~~~~~la~~l~~~~--------~-~~ 155 (474)
.++.+..|+.+|||..|..... .=..++.+.+++.+.+... ..|+ +..++++.+++++.+.+ . +.
T Consensus 25 ~~~~~~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~ 104 (412)
T PTZ00433 25 NAKPSPSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKK 104 (412)
T ss_pred hhccCCCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCCh
Confidence 3455568888999998843211 0125788999998887652 2333 23567778888877542 1 46
Q ss_pred CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHH
Q 011959 156 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 235 (474)
Q Consensus 156 ~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~ 235 (474)
+++++|+|+++++..+++. ....++.|++.+++|..+.. .....|..+..++...... + --|+++
T Consensus 105 ~~i~it~G~~~al~~~~~~--~~~~gd~vlv~~P~y~~~~~-~~~~~g~~~~~i~~~~~~~---------~---~~d~~~ 169 (412)
T PTZ00433 105 DNVVLCSGVSHAILMALTA--LCDEGDNILVPAPGFPHYET-VCKAYGIEMRFYNCRPEKD---------W---EADLDE 169 (412)
T ss_pred hhEEEeCChHHHHHHHHHH--hcCCCCEEEEccCCcccHHH-HHHHcCCEEEEEecCcccc---------C---cCCHHH
Confidence 8999999999999999984 23456788888888877533 3333443322211110000 0 017888
Q ss_pred HHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cccccC-CCCcee--
Q 011959 236 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFG-VTPDLT-- 310 (474)
Q Consensus 236 le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g-~~pdi~-- 310 (474)
|++.++. ++++|++..++|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+..+ ....+. -.+-++
T Consensus 170 l~~~~~~---~~~~i~~~~p~NPtG~~~s~~~-~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~ 245 (412)
T PTZ00433 170 IRRLVDD---RTKALIMTNPSNPCGSNFSRKH-VEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILG 245 (412)
T ss_pred HHHHhcc---CceEEEEeCCCCCCCcccCHHH-HHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEc
Confidence 9887763 4566667666788998887666 999999999999999999999988 443221 111111 111222
Q ss_pred ehhhhcC-CCcceEEEEe------cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 011959 311 TLGKIIG-GGLPVGAYGG------RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 383 (474)
Q Consensus 311 t~sK~l~-~G~~iG~~~~------~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~ 383 (474)
+|||.++ +|+|+||+++ .+++++.+.. . ...+++.+++.+.++.++|+.- .+.+.+++++..+.-++.
T Consensus 246 SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~---~-~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~~ 320 (412)
T PTZ00433 246 GTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKR---L-GMLVCGPCSVVQAALGEALLNT-PQEHLEQIVAKLEEGAMV 320 (412)
T ss_pred cchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHH---H-hhccCCCChHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHH
Confidence 7999996 8999999986 2457666652 1 1123567889998888887631 123333333333333333
Q ss_pred HHHHhhhc-CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC----CcceEEecCCcH
Q 011959 384 IIDAGKKA-GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSS 457 (474)
Q Consensus 384 L~~~~~~~-~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~~~~~~t~ 457 (474)
+.+.+.++ ++....+..|+++++.+......+ .....++++.|+ ++||.+.++. .+++|+++...+
T Consensus 321 l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~~--------~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~~~ 392 (412)
T PTZ00433 321 LYNHIGECIGLSPTMPRGSMFLMSRLDLEKFRD--------IKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISRPV 392 (412)
T ss_pred HHHHHhcCCCCcccCCCeeEEEEEEechhhcCC--------CCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecCCH
Confidence 33333332 222223445777887774211000 001256788887 5799999874 246788888889
Q ss_pred HHHHHHHHHHHHHHhh
Q 011959 458 DDIQHTITAAEKVLRQ 473 (474)
Q Consensus 458 e~i~~~l~~l~~~~~~ 473 (474)
+++++++++|.++++.
T Consensus 393 e~l~~al~~l~~~~~~ 408 (412)
T PTZ00433 393 EVLREAVERIKAFCER 408 (412)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=215.23 Aligned_cols=324 Identities=15% Similarity=0.163 Sum_probs=208.9
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRL 174 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ 174 (474)
.++++++||..|. +++| .++.+++++.+.+.....| +.....+|.+.++++++ +.++|++++|+++++..+++.
T Consensus 17 ~~~~~~i~l~~~~--~~~~-~p~~~~~a~~~~~~~~~~y--~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~ 91 (356)
T PRK08056 17 ISPDQLLDFSANI--NPLG-MPVSLKRAIIDNLDCAERY--PDVEYRHLHQALARHHQVPASWILAGNGETESIFAVVSG 91 (356)
T ss_pred CChhhEEEecccc--CCCC-CCHHHHHHHHHHHHhcccC--cCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHH
Confidence 4567789998764 5666 6788999998877654333 33345778788888776 678999999999999998884
Q ss_pred hHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011959 175 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (474)
Q Consensus 175 ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (474)
+.+ +++++.+++|..+.. .....|..+..++.....++ . .| +++++.+. +++++|++..
T Consensus 92 ---l~~-g~viv~~P~y~~~~~-~~~~~g~~~~~v~~~~~~~~-----------~-~~-~~~~~~~~---~~~k~v~l~~ 150 (356)
T PRK08056 92 ---LKP-RRAMIVTPGFAEYRR-ALQQVGCEIRRYSLREADGW-----------Q-LT-DAILEALT---PDLDCLFLCT 150 (356)
T ss_pred ---hCC-CCEEEeCCCcHHHHH-HHHHcCCeEEEEecccccCC-----------C-cc-HHHHHhcc---CCCCEEEEeC
Confidence 334 357888888866432 33444443332211111111 0 02 23444443 3566777766
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCc---eeehhhhcC-CCcceEEEEe-c
Q 011959 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD---LTTLGKIIG-GGLPVGAYGG-R 328 (474)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pd---i~t~sK~l~-~G~~iG~~~~-~ 328 (474)
++|++|.+.+. +.+++|.++|++||++||+||+|.+| ..+.... ..+...+. +.+|||.++ +|+|+||+++ +
T Consensus 151 p~NPTG~~~~~-~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~ 228 (356)
T PRK08056 151 PNNPTGLLPER-QLLQAIAERCKSLNIALILDEAFIDFIPDETGFI-PQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSD 228 (356)
T ss_pred CcCCCCCCCCH-HHHHHHHHHHHhcCCEEEEecchhccCCcchHHH-HHhccCCCEEEEEechhhccCcchhheeeecCC
Confidence 77888987654 44999999999999999999999888 4332111 11111123 237999999 8999999987 4
Q ss_pred HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEE
Q 011959 329 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (474)
Q Consensus 329 ~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (474)
+++++.+... ...++.+.+++.++.++++.-.. ....+.++++.+++.+.|++ .+.....+..|.++++.
T Consensus 229 ~~~~~~l~~~-----~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~~~~~~~~~~~ 299 (356)
T PRK08056 229 DAAVARMRRQ-----QMPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCA----LPLLTVWPGRANYLFLR 299 (356)
T ss_pred HHHHHHHHHh-----CCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhc----CCCcEEcCCCCcEEEEE
Confidence 6777777531 23456677777777777641000 22334455555555555543 32122234567777776
Q ss_pred EecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC------cceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
+..+ ..++++.|+++||.+.++.. +++|+++. ++++.+.+++.|+++++
T Consensus 300 ~~~~---------------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 300 CERP---------------DIDLQRALLTQRILIRSCANYPGLDSRYYRVAIR-SAAENERLLAALRNVLT 354 (356)
T ss_pred cCCC---------------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEEc-CHHHHHHHHHHHHHHHc
Confidence 5321 14688899999999987631 35677754 67999999999998764
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=215.66 Aligned_cols=344 Identities=11% Similarity=0.074 Sum_probs=218.1
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 170 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~ 170 (474)
|.+++|+..|.. .++ .+|.+.+++.+.+.+.. .|+ +..++++++++++.+.++ ..++|++++|+++|+..
T Consensus 32 ~~~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~ 108 (402)
T PRK06107 32 GRSIVDLTVGEP--DFD-TPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFL 108 (402)
T ss_pred cCCEEEcCCCCC--CCC-CCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 345677777742 222 47889999999887532 232 234788899998887764 46789999999999999
Q ss_pred HHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEE
Q 011959 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (474)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (474)
+++. ....++.|++.+++|.++.... ...+.....+..+...++ . -|++++++.+.. ++++|
T Consensus 109 ~~~~--~~~~gd~vl~~~p~y~~y~~~~-~~~~~~~~~v~~~~~~~~-----------~-~~~~~l~~~~~~---~~~~v 170 (402)
T PRK06107 109 ALMA--TLEAGDEVIIPAPYWVSYPDMV-LANDGTPVIVACPEEQGF-----------K-LTPEALEAAITP---RTRWL 170 (402)
T ss_pred HHHH--hcCCCCEEEEecCCCcCHHHHH-HHcCCEEEEecCCcccCC-----------C-CCHHHHHhhcCc---CceEE
Confidence 9873 2345677888888777754333 333322211111111111 0 167888887753 45666
Q ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHh-CCEEEEeccccCc-ccCCCcc-c-cc-cCCCCcee---ehhhhcC-CCcc
Q 011959 251 ILEPVVGNSGFIAPKPDFLNAIRRITKEN-GALLIFDEVMTGF-RLAYGGA-Q-EY-FGVTPDLT---TLGKIIG-GGLP 321 (474)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~-r~g~~~~-~-~~-~g~~pdi~---t~sK~l~-~G~~ 321 (474)
++..++|++|.+.+.++ +++|.++|++| ++++|+||+|..+ ..+..+. . .. .+....++ +|||.++ +|+|
T Consensus 171 ~l~~p~NPtG~~~s~~~-~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlR 249 (402)
T PRK06107 171 ILNAPSNPTGAVYSRAE-LRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWR 249 (402)
T ss_pred EEECCCCCCCcCcCHHH-HHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccc
Confidence 66555778898887666 99999999998 9999999999877 4332111 1 11 11122333 6899998 8999
Q ss_pred eEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee
Q 011959 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (474)
Q Consensus 322 iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (474)
+||+++++++++.+.. .....+++.+.+++.++..+|+.-.. ....+.++++.+.+.+.|++. -++....+.
T Consensus 250 iG~~~~~~~~~~~~~~---~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~---~g~~~~~p~ 323 (402)
T PRK06107 250 IGYAAGPADLIAAINK---LQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAI---PGLSCLVPD 323 (402)
T ss_pred eeeeecCHHHHHHHHH---HHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcC---CCCcccCCC
Confidence 9999999999988873 33334567788899998888852111 222334444455555555432 022222234
Q ss_pred eceeEEEEEecCCCcCcccccccch---HHHHHHHHHH-HHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSET---TKFARFYRGM-LEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~l-~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
.|.++|+.+..-. ....+.. .....+.+.+ .++||.+.|+. .+++|+++..++|++++++++|.+.+
T Consensus 324 gg~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~~~e~l~~~l~~l~~~l 398 (402)
T PRK06107 324 GAFYLYVNCAGLI-----GKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIATSLETLEEACARIERAV 398 (402)
T ss_pred cceEEeeeccccc-----ccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 4666676652100 0000100 0123455545 57899999873 24689998899999999999999998
Q ss_pred hhC
Q 011959 472 RQI 474 (474)
Q Consensus 472 ~~~ 474 (474)
+++
T Consensus 399 ~~~ 401 (402)
T PRK06107 399 AAL 401 (402)
T ss_pred Hhc
Confidence 764
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=211.31 Aligned_cols=330 Identities=19% Similarity=0.157 Sum_probs=221.0
Q ss_pred CCHHHHHHHHHHHHhc-C----CCCCCCHHHHHHHHHHHhhCC----CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEE
Q 011959 116 ADDQVLAALGETMKKG-T----SFGAPCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 186 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~-~----~~~~~~~~~~~la~~l~~~~~----~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~ 186 (474)
.+..|.+++++.+... . ...+..++...|++++.+.++ ..++|++|+|+.+|+..++.. .+..++.||+
T Consensus 45 ~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~--l~~~GDeVii 122 (420)
T KOG0257|consen 45 PPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLG--LLNPGDEVIV 122 (420)
T ss_pred CcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHH--HcCCCCEEEE
Confidence 4566888888887663 2 112467888899999998665 356899999999999988884 4567899999
Q ss_pred EeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEc-cCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCC
Q 011959 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA-PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265 (474)
Q Consensus 187 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~-~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~ 265 (474)
++|.|..+.....-..|.++....-+ ..| ++..- -..|.+.||..+.+ ++++|+++.++|++|.+.+.
T Consensus 123 ~eP~fd~Y~~~~~maG~tpv~v~~~~-~~g-------~~~s~~~~~D~~~le~~~t~---kTk~Ii~ntPhNPtGkvfsR 191 (420)
T KOG0257|consen 123 FEPFFDCYIPQVVMAGGTPVFVPLKP-KEG-------NVSSSDWTLDPEELESKITE---KTKAIILNTPHNPTGKVFSR 191 (420)
T ss_pred ecCcchhhhhHHhhcCCcceeecccc-ccc-------cccCccccCChHHHHhhccC---CccEEEEeCCCCCcCcccCH
Confidence 99999998777766666544321111 011 00100 12389999999984 68899999999999999887
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-C--ccccccCC---CCceeehhhhcC-CCcceEEEEecHHHHHhhcC
Q 011959 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAY-G--GAQEYFGV---TPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAP 337 (474)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~--~~~~~~g~---~pdi~t~sK~l~-~G~~iG~~~~~~~i~~~~~~ 337 (474)
++ |++|++||++||+++|+||||--+ ..+. + ++.. -|+ ...+.++||+++ .|||+||+++++.++....
T Consensus 192 ee-Le~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~asl-Pgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~~- 268 (420)
T KOG0257|consen 192 EE-LERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASL-PGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSALF- 268 (420)
T ss_pred HH-HHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecC-CchhheEEEeccccceeeeeeeeeeeeechHHhhhhHH-
Confidence 77 999999999999999999999766 5553 1 2211 222 333447999999 7999999999888888776
Q ss_pred CCCcccccCCCCChHHHHHHHHHHHHhc---C-------CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEE
Q 011959 338 AGPMYQAGTLSGNPLAMTAGIHTLKRLK---E-------PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (474)
Q Consensus 338 ~~~~~~~~t~~~~~~~~aaa~aal~~~~---~-------~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (474)
.......+..+...+.|..+++..-. + .++...++++++.+.+.|.++ ++....+..+.+++.+
T Consensus 269 --~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l----g~~v~~p~gayyl~ad 342 (420)
T KOG0257|consen 269 --PVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL----GLKVTGPEGAYYLWAD 342 (420)
T ss_pred --HHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc----CCccccCCCceEEEEe
Confidence 33344455556566666666654322 1 125566777777777777765 4444455667778888
Q ss_pred EecC-CCcCcccccccchHHHHHHHHHHH-HCCeEecccCC-----------cceEEecCCcHHHHHHHHHHHHH
Q 011959 408 FTEG-PVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-----------EAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 408 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-----------~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
|... +...+... .+....-.+.+.+. +.|+.+.|... ..+++.++.+++-++.++++|++
T Consensus 343 fs~~~~~~~~~~~--~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k~~~~L~~a~e~l~~ 415 (420)
T KOG0257|consen 343 FSLAKSWPFFEEI--LEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCKADETLRKAIERLKK 415 (420)
T ss_pred ccccccCCcchhh--ccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 8611 11000000 00001134566666 55887766531 12355678888999999998873
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-24 Score=213.89 Aligned_cols=334 Identities=16% Similarity=0.148 Sum_probs=214.8
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGV 171 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~~~a 171 (474)
.++||..|.... ..++.+.+++.+.+.... .|. +..++++.+++++.+.++ ..+ +|++|+||++|+..+
T Consensus 25 ~~i~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~ 101 (387)
T PRK07777 25 GAVNLGQGFPDE---DGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAA 101 (387)
T ss_pred CeEEccCCCCCC---CCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHH
Confidence 468888875321 235778888887776532 232 234667777777766654 234 799999999999998
Q ss_pred HHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEE
Q 011959 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (474)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (474)
+.. ...+++.|++..++|++.. ..+...|..+...+...... .+. -|++++++.+.. ++++|+
T Consensus 102 ~~~--~~~~gd~vli~~p~y~~~~-~~~~~~g~~~~~~~~~~~~~--------~~~---~d~~~l~~~~~~---~~~~v~ 164 (387)
T PRK07777 102 VLG--LVEPGDEVLLIEPYYDSYA-AVIAMAGAHRVPVPLVPDGR--------GFA---LDLDALRAAVTP---RTRALI 164 (387)
T ss_pred HHH--hcCCCCEEEEeCCCchhhH-HHHHHCCCEEEEeecCCccC--------CCc---CCHHHHHHhcCc---ccEEEE
Confidence 873 2345678888888887754 34444444322211110000 000 178899888763 467777
Q ss_pred EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-cccccc-CCCCc---eeehhhhcC-CCcceEE
Q 011959 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF-GVTPD---LTTLGKIIG-GGLPVGA 324 (474)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~-g~~pd---i~t~sK~l~-~G~~iG~ 324 (474)
+++++|++|.+.+.++ +++|.++|++|+++||+||+|.++ ..+.. .....+ +...+ +.+|||.++ +|+|+||
T Consensus 165 l~~p~NPtG~~~~~~~-~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~ 243 (387)
T PRK07777 165 VNSPHNPTGTVLTAAE-LAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGW 243 (387)
T ss_pred EcCCCCCCCccCCHHH-HHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEE
Confidence 8777888998886554 999999999999999999999877 43321 111111 21112 237999999 8999999
Q ss_pred EEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeece
Q 011959 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 402 (474)
Q Consensus 325 ~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~ 402 (474)
+++++++++.+.. .....+++.+.+.+.++..+++..+. ..+.+.++++.+.+.+.|++. ++....+..|.
T Consensus 244 ~~~~~~l~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~g~~ 316 (387)
T PRK07777 244 ACGPAPLIAAVRA---AKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEA----GFEVHDSAGTY 316 (387)
T ss_pred EecCHHHHHHHHH---HHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC----CCCccCCCcce
Confidence 9999999887763 22333555666677676666653211 234455666666666666553 32222233455
Q ss_pred eEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC---------CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ---------FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~---------~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
++++.+..... ....++++.|+ ++||.+.|+. .+.+|+++..+++++++++++|.++..
T Consensus 317 ~~~~~~~~~~~-----------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~~ 385 (387)
T PRK07777 317 FLCADPRPLGY-----------DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRALRG 385 (387)
T ss_pred EEEecccccCC-----------CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence 56666532110 01257888887 5799998763 235789888899999999999998754
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=215.85 Aligned_cols=318 Identities=17% Similarity=0.170 Sum_probs=205.0
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 177 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~ 177 (474)
+.++++..|. ++++ .+|.+++++.+.+.....| +.....+|.+.++++++ ..++|++++|+++++..+++. .
T Consensus 43 ~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~Y--~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~--l 115 (370)
T PRK09105 43 EGAVFLNANE--CPLG-PSPAARDAAARSAALSGRY--DLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLA--F 115 (370)
T ss_pred CCcEEecCCC--CCCC-CCHHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHH--H
Confidence 4456666663 3454 6889999998877654334 33336788888888876 678999999999999999984 2
Q ss_pred hcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccC
Q 011959 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (474)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (474)
...+++|++.+++|.++.. .....|..+..++. ..+. ..|++++++.. ++++++++..++|
T Consensus 116 ~~~gd~Vli~~P~y~~~~~-~~~~~g~~~~~v~~--~~~~------------~~d~~~l~~~~----~~~~~v~l~nP~N 176 (370)
T PRK09105 116 TSPTAGLVTADPTYEAGWR-AADAQGAPVAKVPL--RADG------------AHDVKAMLAAD----PNAGLIYICNPNN 176 (370)
T ss_pred cCCCCEEEEeCCChHHHHH-HHHHcCCeEEEecC--CCCC------------CCCHHHHHhcC----CCCCEEEEeCCCC
Confidence 3456789998988876533 33444443332211 1110 01677776542 2455666655678
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEecHHHHH
Q 011959 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIME 333 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~i~~ 333 (474)
++|.+.+.++ ++++.+.|+ ++++||+||+|..|... ....+..+..++++ +|||.+| .|+|+||+++++++++
T Consensus 177 PTG~~~~~~~-l~~l~~~~~-~~~~lIvDEaY~~f~~~-~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~ 253 (370)
T PRK09105 177 PTGTVTPRAD-IEWLLANKP-AGSVLLVDEAYIHFSDA-PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLA 253 (370)
T ss_pred CCCcCcCHHH-HHHHHHhCC-CCcEEEEECchHHhccC-cchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHH
Confidence 8999887555 777777654 59999999999766211 11122222234544 7999998 8999999999999999
Q ss_pred hhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCC
Q 011959 334 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (474)
Q Consensus 334 ~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (474)
.+.. . ..++.+.+++.++.++|+..+- +...++++++.+++.+.|++ +++. ..++.|.++.+.+..
T Consensus 254 ~l~~---~---~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~----~g~~-~~~~~~~f~~~~~~~-- 320 (370)
T PRK09105 254 KLAR---F---GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKK----KGYK-CTPSQANCFMVDVKR-- 320 (370)
T ss_pred HHHh---c---CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH----CCCC-cCCCCCcEEEEeCCC--
Confidence 8873 2 2345677777887777753110 22334444445555555544 3432 234567776654421
Q ss_pred CcCcccccccchHHHHHHHHHHHHCCeEeccc---CCcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPS---QFEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---~~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
...++++.|+++||.+... ..+++|+++. +++++++++++|+++++
T Consensus 321 -------------~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~~-~~~~~~~l~~al~~~~~ 369 (370)
T PRK09105 321 -------------PAKAVADAMAKQGVFIGRSWPIWPNWVRVTVG-SEEEMAAFRSAFAKVMR 369 (370)
T ss_pred -------------CHHHHHHHHHHCCcEEecCCCCCCCeEEEEcC-CHHHHHHHHHHHHHHhh
Confidence 0257889999999998422 1346788866 67889999999988763
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=212.68 Aligned_cols=320 Identities=16% Similarity=0.173 Sum_probs=207.2
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 177 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~ 177 (474)
..++||..|. +.++. ++.+.+++.+.+.....| +.....+|.+.++++++ ..++|++++|+++++..+++.
T Consensus 19 ~~~~~l~~~~--~~~~~-p~~~~~a~~~~~~~~~~Y--~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~--- 90 (354)
T PRK06358 19 NMILDFSANI--NPLGV-PESLKQAITENLDKLVEY--PDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKV--- 90 (354)
T ss_pred cceEEecCCC--CCCCC-CHHHHHHHHHHHHhhhcC--CCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH---
Confidence 3478987764 45553 789999999887654434 33334677777777775 678999999999999999884
Q ss_pred hcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccC
Q 011959 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (474)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (474)
+ .++.|++.+++|+.+...+ ...|..+...+.....++ .. | +++.+.+.. +++++++..++|
T Consensus 91 ~-~~~~v~i~~P~y~~~~~~~-~~~g~~~~~~~~~~~~~~-----------~~-d-~~~~~~~~~---~~~~v~~~~P~N 152 (354)
T PRK06358 91 T-KPKKVLILAPTFAEYERAL-KAFDAEIEYAELTEETNF-----------AA-N-EIVLEEIKE---EIDLVFLCNPNN 152 (354)
T ss_pred h-CCCcEEEecCChHHHHHHH-HHcCCeeEEEeCccccCC-----------Cc-c-HHHHHhhcc---CCCEEEEeCCCC
Confidence 4 3468999999998754333 333433222111000010 01 4 344444432 355554444478
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cccccCCCCcee---ehhhhcC-CCcceEEEEe-cHH
Q 011959 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLT---TLGKIIG-GGLPVGAYGG-RRD 330 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~-~~~ 330 (474)
++|.+.+.++ +++|.++|++|+++||+||+|..| ..+... .....+..++++ +|||.++ +|+|+||+++ ++.
T Consensus 153 PtG~~~~~~~-~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~ 231 (354)
T PRK06358 153 PTGQLISKEE-MKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKN 231 (354)
T ss_pred CCCCccCHHH-HHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHH
Confidence 8898887666 999999999999999999999988 443211 111222223443 7999999 9999999987 467
Q ss_pred HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEe
Q 011959 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (474)
Q Consensus 331 i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (474)
+++.+... . ..++.+.+++.++.++|+.-.. ....+.++++.+.+.+.|++ ++.....++.|.++++.+.
T Consensus 232 ~~~~~~~~---~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~~~~g~f~~~~~~ 302 (354)
T PRK06358 232 LAEKLLQM---R--EPWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSE----FKGIKVYKPSVNFIFFKLE 302 (354)
T ss_pred HHHHHHHh---C--CCCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc----CCCcEEcCCcceEEEEEcC
Confidence 87777632 1 2466788888888888742110 22334444455555555543 3222223456778777663
Q ss_pred cCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC------cceEEecCCcHHHHHHHHHHHHHHH
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
+ ..++.+.|+++||.+.++.. +++|++ ..++++.++++++|++++
T Consensus 303 ~----------------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls-~~~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 303 K----------------PIDLRKELLKKGILIRSCSNYRGLDENYYRVA-VKSREDNKKLLKALEVIL 353 (354)
T ss_pred c----------------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE-eCCHHHHHHHHHHHHHHh
Confidence 2 14788899999999998631 246666 457788999999998875
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-24 Score=213.73 Aligned_cols=330 Identities=13% Similarity=0.071 Sum_probs=215.5
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CCC---CCCHHHHHHHHHHHhhCC---C-CCeEEEeCCHHHHHHHH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---S-IEMVRFVNSGTEACMGV 171 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~---~~~~~~~~la~~l~~~~~---~-~~~v~~~~sGseA~~~a 171 (474)
++|+..|. ..+. .++.+.+|+.+.+.... .|. +..+++.++++++++.++ . .+.+++++|+++++..+
T Consensus 29 ~~~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~ 105 (389)
T PRK05957 29 TISLGQGV--VSYP-PPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNA 105 (389)
T ss_pred eEEccCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHH
Confidence 56776663 2233 57889999988776432 222 235778889999988765 2 56899999999999988
Q ss_pred HHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEE
Q 011959 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (474)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (474)
++.. ..+++.|++.+++|..+.. .....|..+..++.....+ -|++++++.++. ++++|+
T Consensus 106 ~~~~--~~~gd~Vlv~~P~y~~~~~-~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~i~~---~~klv~ 165 (389)
T PRK05957 106 ILAI--TDPGDEIILNTPYYFNHEM-AITMAGCQPILVPTDDNYQ--------------LQPEAIEQAITP---KTRAIV 165 (389)
T ss_pred HHHh--cCCCCEEEEeCCCCcCHHH-HHHhcCCEEEEeecCCCCC--------------cCHHHHHHhcCc---CceEEE
Confidence 8742 3456778888888866432 3333343322211110001 178999988863 567777
Q ss_pred EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-cc-ccccCCCCc---eeehhhhcC-CCcceEE
Q 011959 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GA-QEYFGVTPD---LTTLGKIIG-GGLPVGA 324 (474)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~-~~~~g~~pd---i~t~sK~l~-~G~~iG~ 324 (474)
+..++|++|.+.+..+ +++|.++|++||++||+||+|.+| ..+.. .. ....+.... +.+|||.++ +|+|+||
T Consensus 166 ~~~p~NPtG~~~~~~~-~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~ 244 (389)
T PRK05957 166 TISPNNPTGVVYPEAL-LRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGY 244 (389)
T ss_pred EeCCCCCCCcCcCHHH-HHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEE
Confidence 7777888999888666 999999999999999999999888 43321 11 111122222 347999998 8999999
Q ss_pred EEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCC-eeEEeeec
Q 011959 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYIS 401 (474)
Q Consensus 325 ~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~v~~~g 401 (474)
+++++++++.+.. .......+.+.+++.++..+|+.-.. ++..+.++++.+.+.+.|+++. +. ....+..|
T Consensus 245 ~~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~---~~~~~~~~~gg 318 (389)
T PRK05957 245 MVIPIHLLEAIKK---IQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQ---DRCTLHPANGA 318 (389)
T ss_pred EecCHHHHHHHHH---HHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcC---CCccccCCCee
Confidence 9999999988873 22222345566788887777752110 2233444555555555554421 11 11223346
Q ss_pred eeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecC-CcHHHHHHHHHHHHHHHhh
Q 011959 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~-~t~e~i~~~l~~l~~~~~~ 473 (474)
.++|+.+... ....++++.|+ ++||.+.|+. .+++|+++. .+++++++++++|.+.+++
T Consensus 319 ~~~~~~~~~~-------------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~ 385 (389)
T PRK05957 319 FYCFLKVNTD-------------LNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLKT 385 (389)
T ss_pred EEEEEeCCCC-------------CChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 6677776321 11256788887 5899999873 235788875 5899999999999998865
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-24 Score=210.52 Aligned_cols=317 Identities=15% Similarity=0.135 Sum_probs=210.2
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhc
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT 179 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~ 179 (474)
.+||..|. +.++ .++.+++++.+.+.......++.....+|.+.++++++ ..++|++++|+++++..+++. ...
T Consensus 24 ~~~l~~~~--~~~~-~p~~~~~a~~~~~~~~~~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~--l~~ 98 (351)
T PRK14807 24 KYKMDANE--TPFE-LPEEVIKNIQEIVKSSQVNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLA--FIN 98 (351)
T ss_pred eeEccCCC--CCCC-CCHHHHHHHHHHhhcCcccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHH--hcC
Confidence 36666663 3333 57899999988776432223333335678888888776 568999999999999998884 234
Q ss_pred CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCC
Q 011959 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (474)
.++.|++.+++|.++ .......|..+..++.....+ -|++++++.++.+ ++++|+++.++|++
T Consensus 99 ~gd~Vlv~~p~y~~~-~~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~~~~~--~~k~v~l~~p~NPt 161 (351)
T PRK14807 99 KGDVVIYPHPSFAMY-SVYSKIAGAVEIPVKLKEDYT--------------YDVGSFIKVIEKY--QPKLVFLCNPNNPT 161 (351)
T ss_pred CCCEEEEeCCChHHH-HHHHHHcCCeEEEeecCCCCC--------------CCHHHHHHHhhcc--CCCEEEEeCCCCCC
Confidence 567899999998753 333344454333221110001 1789999888642 56777777778889
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEecHHHHHhh
Q 011959 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIMEMV 335 (474)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~i~~~~ 335 (474)
|.+.+ .+++.++|++++.++|+||+|.+|. +... .......++++ +|||.++ +|+|+||+++++++++.+
T Consensus 162 G~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~-~~~~-~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~ 235 (351)
T PRK14807 162 GSVIE----REDIIKIIEKSRGIVVVDEAYFEFY-GNTI-VDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYL 235 (351)
T ss_pred CCCCC----HHHHHHHHHhCCCEEEEeCcchhhc-ccch-HHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHHHH
Confidence 99999 7778888889889999999998772 1111 11111123333 7999998 899999999999999988
Q ss_pred cCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcC
Q 011959 336 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 415 (474)
Q Consensus 336 ~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~ 415 (474)
.... ..++.+++++.++.+.|+...-++..++++++.+.+.+.|+++ .++. ..++.|.++++.+.+
T Consensus 236 ~~~~-----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~---~g~~-~~~~~~~~~~i~~~~----- 301 (351)
T PRK14807 236 NLVK-----SPYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKI---PGIK-VYPSKTNFILVKFKD----- 301 (351)
T ss_pred HHcc-----CCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC---CCcE-ECcCCccEEEEEcCC-----
Confidence 7321 1345678888888888763111333444555555555555432 1222 234567777776631
Q ss_pred cccccccchHHHHHHHHHHHHCCeEecccC-----CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 416 FEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
...+.+.|+++||.+.+.. .+++|+++. +.++.+++++.|++++
T Consensus 302 -----------~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 302 -----------ADYVYQGLLERGILVRDFSKVEGLEGALRITVS-SCEANDYLINGLKELL 350 (351)
T ss_pred -----------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC-CHHHHHHHHHHHHHhh
Confidence 2567888999999997653 245788765 5678899999998764
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-24 Score=213.85 Aligned_cols=319 Identities=16% Similarity=0.083 Sum_probs=209.0
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHh
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~a 175 (474)
.+..+|||..|. ++++ .+|.+++++.+. .....| +.....+|.+.+++++. ..++|++++|+++++..+++.
T Consensus 50 ~~~~~i~l~~n~--~p~~-~~~~v~~a~~~~-~~~~~Y--p~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~- 122 (380)
T PLN03026 50 KPEDIVKLDANE--NPYG-PPPEVLEALGNM-KFPYVY--PDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRC- 122 (380)
T ss_pred CccceEEccCCC--CCCC-CCHHHHHHHHhh-HhhccC--CCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHH-
Confidence 466889998874 4555 678898888652 222223 33335678888888776 578999999999999999874
Q ss_pred HhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
....++.|++.+++|..+. ......|..+..++.....+ .|++++++.++. +++++|+++++
T Consensus 123 -~~~~gd~Vlv~~P~y~~y~-~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~~~~--~~~~~v~l~~P 184 (380)
T PLN03026 123 -VLDPGDKIIDCPPTFGMYV-FDAAVNGAEVIKVPRTPDFS--------------LDVPRIVEAVET--HKPKLLFLTSP 184 (380)
T ss_pred -hcCCCCEEEEcCCChHHHH-HHHHHcCCEEEEeecCCCCC--------------cCHHHHHHHHhc--cCCcEEEEeCC
Confidence 2345578898898886432 22333444332221110001 178999888842 25677777777
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEecHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRD 330 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~ 330 (474)
+|++|.+.+ .+++.++++.. ++||+||+|..| ..+... ....-.++++ ||||.+| +|+|+||++++++
T Consensus 185 ~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~--~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~ 257 (380)
T PLN03026 185 NNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQESRM--KWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLS 257 (380)
T ss_pred CCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCcchH--HHHHhCCCEEEEecchHhhcCccccceeeecCHH
Confidence 888999998 56666777654 899999999887 433211 1111123333 7999999 8999999999999
Q ss_pred HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEe
Q 011959 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (474)
Q Consensus 331 i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (474)
+++.+.... ..++.+.+++.++.++|+..+. ++..+.++++++++.+.|++ ++.....+..|+++++.+.
T Consensus 258 ~i~~l~~~~-----~~~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~p~~~~f~~~~~~ 328 (380)
T PLN03026 258 IIEYLWRAK-----QPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKE----VPFLEPYPSDANFILCRVT 328 (380)
T ss_pred HHHHHHHhc-----CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH----CCCCeECCCCCeEEEEECC
Confidence 998886321 2466788888888888853111 23344455555555555554 3322223556778777764
Q ss_pred cCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHH
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~ 470 (474)
.. ....++.+.|+++||.+.++. .+++|+++. +.++++++++.|+++
T Consensus 329 ~~-------------~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~-~~~~~~~l~~al~~~ 379 (380)
T PLN03026 329 SG-------------RDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG-KPEHTDALMEALKQL 379 (380)
T ss_pred CC-------------CCHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC-CHHHHHHHHHHHHHh
Confidence 21 012568888999999998753 245788866 677888998888764
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-24 Score=212.22 Aligned_cols=315 Identities=14% Similarity=0.085 Sum_probs=203.5
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhCC----CCCeEEEeCCHHHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMG 170 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---~~~~~~~~la~~l~~~~~----~~~~v~~~~sGseA~~~ 170 (474)
+..++||..+ ++....++.+.+++.+.... ..|+ +..++++.+++++.+.++ ..++|++|+|+++++..
T Consensus 26 ~~~~i~l~~~---~p~~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~ 101 (364)
T PRK07865 26 PDGIVDLSVG---TPVDPVPPVIQEALAAAADA-PGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAW 101 (364)
T ss_pred CCCEEEcCCC---CCCCCCCHHHHHHHHHHHhh-CCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHH
Confidence 3456788777 44444578888988775533 2333 234778889998887643 36799999999999988
Q ss_pred HHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEE
Q 011959 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (474)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (474)
++.+. ....++.|++.+++|.+..... ...|.. +..+ +++++++. .++++|
T Consensus 102 ~~~~l-~~~~gd~Vl~~~p~y~~~~~~~-~~~g~~-------------------~~~~--~~~~~l~~------~~~~~v 152 (364)
T PRK07865 102 LPTLL-GLGPGDVVVIPELAYPTYEVGA-RLAGAT-------------------VVRA--DSLTELGP------QRPALI 152 (364)
T ss_pred HHHHH-cCCCCCEEEECCCCcccHHHHH-HhcCCE-------------------EEec--CChhhCCc------ccceEE
Confidence 76631 1245678888888887643322 222221 2222 23333322 256788
Q ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-ccc--cCCC-Cce---eehhhhcC-CCcc
Q 011959 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEY--FGVT-PDL---TTLGKIIG-GGLP 321 (474)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~--~g~~-pdi---~t~sK~l~-~G~~ 321 (474)
++++++|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+.... ... .+.. +.+ .+|||.++ +|+|
T Consensus 153 ~~~~p~NPtG~~~~~~~-~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR 231 (364)
T PRK07865 153 WLNSPSNPTGRVLGVDH-LRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYR 231 (364)
T ss_pred EEcCCCCCCCccCCHHH-HHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCcee
Confidence 88777888999988666 999999999999999999999877 4332211 111 0111 222 27999997 8999
Q ss_pred eEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeee
Q 011959 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (474)
Q Consensus 322 iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (474)
+||+++++++++.+.. ......++.+++.+.++.++|+..+. +..++.++++.+.+.+.|++ +++....+..
T Consensus 232 iG~i~~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~ 304 (364)
T PRK07865 232 AGFVAGDPALVAELLE---VRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEA----AGFRVDHSEA 304 (364)
T ss_pred eEEEecCHHHHHHHHH---HHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH----cCCcccCCCc
Confidence 9999999999888763 22223456688888887777642110 22333444444444444443 4433222334
Q ss_pred ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------CcceEEecCCcHHHHHHHHHHHH
Q 011959 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAE 468 (474)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~ 468 (474)
|.++++.+... ...+.+.|.++||++.|+. .+++|+++..+++++++++++|.
T Consensus 305 ~~~~~~~~~~~---------------~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~~~~~~l~ 363 (364)
T PRK07865 305 GLYLWATRGED---------------CWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTATDERIAAAVERLA 363 (364)
T ss_pred cEEEEEeCCCC---------------HHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecCCHHHHHHHHHHhh
Confidence 55666654211 1456788889999998853 23578888778999999999885
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=218.82 Aligned_cols=332 Identities=14% Similarity=0.100 Sum_probs=206.5
Q ss_pred EEEeccCChhhccCCCCC--HHHHHHHHHHHHhcC--CCC---CCCHHHHHHHHHHHhhCC---CCCeE--EEeCCHHHH
Q 011959 100 EYIDYVGSWGPAIIGHAD--DQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---SIEMV--RFVNSGTEA 167 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~~--~~~---~~~~~~~~la~~l~~~~~---~~~~v--~~~~sGseA 167 (474)
..|||..|...++-++.+ +.+.+++.+.++... .|+ +..++++++++++.+... ..+++ ++|+|+++|
T Consensus 27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~a 106 (396)
T PRK09257 27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGA 106 (396)
T ss_pred CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHH
Confidence 457888875433433333 678888877765422 232 345677778877765542 35666 999999999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC--CCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCC
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL--PDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~--~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (474)
+..++++......++.|++.+++|.++.. .+...|..+..++. +...++ |++.+++.+++.+.
T Consensus 107 l~~~~~~l~~~~pGd~Vlv~~P~y~~~~~-~~~~~g~~~v~v~~~~~~~~~~--------------d~~~l~~~~~~~~~ 171 (396)
T PRK09257 107 LRVGADFLKRAFPDAKVWVSDPTWPNHRA-IFEAAGLEVKTYPYYDAATKGL--------------DFDAMLADLSQAPA 171 (396)
T ss_pred HHHHHHHHHHhCCCCeEEECCCCcccHHH-HHHHcCCcEEEEeccccccCcc--------------CHHHHHHHHHhCCC
Confidence 99998743223567889999999988643 34444544333221 111111 78999998875433
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc-CC-Cccc-cccCCCCce---eehhhhcC-
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AY-GGAQ-EYFGVTPDL---TTLGKIIG- 317 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~-g~-~~~~-~~~g~~pdi---~t~sK~l~- 317 (474)
+..++++...+|++|.+.+.++ +++|.++|++||++||+||+|.+| .. +. .... ...+..+++ .+|||.++
T Consensus 172 ~~~~~i~~~p~NPTG~~~s~~~-~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~ 250 (396)
T PRK09257 172 GDVVLLHGCCHNPTGADLTPEQ-WDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGL 250 (396)
T ss_pred CCEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCcc
Confidence 4556666777888998887666 999999999999999999999887 32 11 1111 111122233 37999999
Q ss_pred CCcceEEEEe---cHHH----HHhhcCCCCcccccCCCCChHHHHHHHHHHHHh------cC--CCHHHHHHHHHHHHHH
Q 011959 318 GGLPVGAYGG---RRDI----MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQ 382 (474)
Q Consensus 318 ~G~~iG~~~~---~~~i----~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~l~~ 382 (474)
+|||+||+++ +++. ++.+. ........+.+++.+.++.+.|+.- .+ ++.+++++++++.+.+
T Consensus 251 ~GlRiG~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~ 327 (396)
T PRK09257 251 YGERVGALSVVAEDAEEADRVLSQLK---ATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVE 327 (396)
T ss_pred ccccceeEEEEeCCHHHHHHHHHHHH---HHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999973 4443 33332 1112223345677777777666421 01 2344555555555666
Q ss_pred HHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecC-CcHHHHH
Q 011959 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQ 461 (474)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~-~t~e~i~ 461 (474)
.|++......+....+..|.++|+.+.. ..+.+.+.++||++.|.+ |+++. .++++|+
T Consensus 328 ~L~~~~~~~~~~~~~p~gg~~~w~~l~~-----------------~~~~~l~~~~~V~~~p~~----ri~~~~~~~~~i~ 386 (396)
T PRK09257 328 ALKAKGPSRDFDFIARQRGMFSYSGLTP-----------------EQVDRLREEFGVYAVGSG----RINVAGLNESNID 386 (396)
T ss_pred HHHhcCCCCCcccccccceEEEecCCCH-----------------HHHHHHHHcCCEEEcCCC----eEEEeeCCHHHHH
Confidence 6655421101222234456667765521 233444467799998853 77765 8999999
Q ss_pred HHHHHHHHHH
Q 011959 462 HTITAAEKVL 471 (474)
Q Consensus 462 ~~l~~l~~~~ 471 (474)
+++++|.+++
T Consensus 387 ~~~~~i~~~~ 396 (396)
T PRK09257 387 YVAEAIAAVL 396 (396)
T ss_pred HHHHHHHhhC
Confidence 9999998763
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-24 Score=211.09 Aligned_cols=314 Identities=17% Similarity=0.171 Sum_probs=207.7
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 177 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~ 177 (474)
.++|||..|. +.++ .+|++++++.+++.....|+.+. ..++.+.++++++ ..+++++++|+++++..+++..
T Consensus 19 ~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~y~~~~--~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l-- 91 (346)
T TIGR01141 19 KEVIKLNSNE--NPFG-PPPKAKEALRAEADKLHRYPDPD--PAELKQALADYYGVDPEQILLGNGSDEIIELLIRAF-- 91 (346)
T ss_pred CceEEccCCC--CCCC-CCHHHHHHHHHhHHHhhcCCCCC--HHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHh--
Confidence 4799999873 3444 58899999999876544443322 2567777777775 5678999999999998888742
Q ss_pred hcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccC
Q 011959 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (474)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (474)
...+++|++.+++|..+ .......|..+...+... .+ ..|++.+++.+. +++++|+++.++|
T Consensus 92 ~~~gd~v~~~~p~y~~~-~~~~~~~g~~~~~~~~~~-~~-------------~~d~~~l~~~~~---~~~~~v~l~~p~N 153 (346)
T TIGR01141 92 LEPGDAVLVPPPTYSMY-EISAKIHGAEVVKVPLDE-DG-------------QLDLEDILVAID---DKPKLVFLCSPNN 153 (346)
T ss_pred cCCCCEEEEcCCCHHHH-HHHHHHcCCeEEEeccCC-CC-------------CCCHHHHHHhcC---CCCCEEEEeCCCC
Confidence 24567888888887532 222233343332211110 01 127899988764 3577788777788
Q ss_pred CCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEecHH
Q 011959 258 NSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRD 330 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~ 330 (474)
++|.+.+ ++++.++|+.+ |+++|+||+|.+| ..+... ......++++ ++||.++ +|+|+||++++++
T Consensus 154 ptG~~~~----~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~ 227 (346)
T TIGR01141 154 PTGNLLS----RSDIEAVLERTPEDALVVVDEAYGEFSGEPSTL--PLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAE 227 (346)
T ss_pred CCCCCCC----HHHHHHHHHhCCCCcEEEEECchhhhcCCccHH--HHHhhCCCEEEEehhhHhhhchhhhceeeecCHH
Confidence 8999998 55566666555 9999999999877 332111 1122223433 7999997 7999999999999
Q ss_pred HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEe
Q 011959 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (474)
Q Consensus 331 i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (474)
+++.+... ..+++.+++++.++.++++.... ....++++++.+++++.|++. . ++. ..+..|.++++++.
T Consensus 228 ~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~-~~~~~g~~~~~~~~ 298 (346)
T TIGR01141 228 IIDALNKV-----RAPFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKL-P--GLE-VYPSDANFVLIRFP 298 (346)
T ss_pred HHHHHHhc-----cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc-C--CCE-ECCCcCCEEEEecC
Confidence 99888732 12466788898888877754321 234455555555555555543 1 222 23445777777763
Q ss_pred cCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----CcceEEecCCcHHHHHHHHHHHH
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSDDIQHTITAAE 468 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~~~~~~t~e~i~~~l~~l~ 468 (474)
. ...++.+.|.++||++.++. ...+|+++. ++++++++++.|+
T Consensus 299 ~---------------~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~-~~~~i~~~~~~l~ 346 (346)
T TIGR01141 299 R---------------DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG-TREENDRFLAALR 346 (346)
T ss_pred C---------------CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC-CHHHHHHHHHHhC
Confidence 2 12578889999999998864 246788865 8899999998763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-24 Score=214.40 Aligned_cols=337 Identities=18% Similarity=0.184 Sum_probs=228.6
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-----CCC---CCCCHHHHHHHHHHHhhCC---CCCeEEEeCCH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-----TSF---GAPCLLENVLAEMVISAVP---SIEMVRFVNSG 164 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----~~~---~~~~~~~~~la~~l~~~~~---~~~~v~~~~sG 164 (474)
.+....+||..++. .+--.......+++.+.+... ..+ .+..+++..+++++....+ .+++|++|+|.
T Consensus 86 ~~~~~~i~f~~g~p-~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~ 164 (459)
T COG1167 86 EDDPSVIDFAGGLP-DPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGA 164 (459)
T ss_pred cCCCceecCCCCCC-CcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCH
Confidence 34467889998863 221124556666666655431 111 1345677788888874433 56799999999
Q ss_pred HHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC
Q 011959 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (474)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (474)
.+|++.++++ ....++.|++-+++|++. ...+...|..+..++.. ..|+ |+++||+.++++
T Consensus 165 q~al~l~~~~--l~~pGd~v~vE~PtY~~~-~~~~~~~g~~~~~vp~d-~~G~--------------~~e~le~~~~~~- 225 (459)
T COG1167 165 QQALDLLLRL--LLDPGDTVLVEDPTYPGA-LQALEALGARVIPVPVD-EDGI--------------DPEALEEALAQW- 225 (459)
T ss_pred HHHHHHHHHH--hCCCCCEEEEcCCCcHHH-HHHHHHcCCcEEecCCC-CCCC--------------CHHHHHHHHhhc-
Confidence 9999999984 233467777778899984 44444445544332221 3343 899999999875
Q ss_pred CCeEEEEEcccc-CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc----cccccCCCCceeehhhhcCC
Q 011959 245 GEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG----AQEYFGVTPDLTTLGKIIGG 318 (474)
Q Consensus 245 ~~~a~vi~ep~~-~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~----~~~~~g~~pdi~t~sK~l~~ 318 (474)
+++++.+.|.+ |++|.+++.+. .++|.++|++||+++|.||+|..| ..+..- +.+..+-...+.||||.+.+
T Consensus 226 -~~k~~y~~P~~qNPtG~tms~~r-R~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~P 303 (459)
T COG1167 226 -KPKAVYVTPTFQNPTGVTMSLER-RKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAP 303 (459)
T ss_pred -CCcEEEECCCCCCCCCCccCHHH-HHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhccc
Confidence 68899999955 66899888777 999999999999999999999888 443322 11111223335589999999
Q ss_pred CcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---HHHHHhhhcC---
Q 011959 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ---GIIDAGKKAG--- 392 (474)
Q Consensus 319 G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~---~L~~~~~~~~--- 392 (474)
|+|+||+++++++++.+. ...+..+.+.+.+.+.+...-+. +..+.+++++.++.+++ .+.+.+.++.
T Consensus 304 glRlG~vv~p~~~~~~~~---~~k~~~~~~~s~~~Q~~la~~l~---~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~ 377 (459)
T COG1167 304 GLRLGYVVAPPELIEKLL---RLKQAADLGPSSLSQAALAAFLL---SGHYDRHLRRLRREYARRRDALLEALAEYLPEL 377 (459)
T ss_pred ccceeeeeCCHHHHHHHH---HHHHHhcCCCChHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999887 34455677778888777766665 22333343333333333 3333333332
Q ss_pred CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---------CcceEEecCC-cHHHHHH
Q 011959 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFTSLAH-SSDDIQH 462 (474)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------~~~~~~~~~~-t~e~i~~ 462 (474)
..+..+..|+++|+.+... ....++.+.++++||.+.+.+ .+.+++++.. +++++++
T Consensus 378 ~~~~~p~gG~flwl~l~~~-------------~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~ 444 (459)
T COG1167 378 ATWTRPEGGLFLWLELPEG-------------IDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEE 444 (459)
T ss_pred eeeecCCceEEEEEEcCCC-------------CCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHH
Confidence 2334555688999988543 123678899999999998832 1246776544 7999999
Q ss_pred HHHHHHHHHhh
Q 011959 463 TITAAEKVLRQ 473 (474)
Q Consensus 463 ~l~~l~~~~~~ 473 (474)
++++|.+++++
T Consensus 445 gi~~l~~~~~~ 455 (459)
T COG1167 445 GIKRLAALLRE 455 (459)
T ss_pred HHHHHHHHHHH
Confidence 99999998865
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-24 Score=212.48 Aligned_cols=332 Identities=16% Similarity=0.119 Sum_probs=212.3
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~ 169 (474)
|..++||.++.. .+. .++.+.+++.+.+.... .|+ +..+++..+++++.+.++ ..++|++++|+++|+.
T Consensus 28 ~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~ 104 (386)
T PRK07550 28 DGPLIDLSQAVP--GYP-PPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFW 104 (386)
T ss_pred CCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH
Confidence 445688888742 222 47788888888765321 232 345677888888877653 4689999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (474)
.+++.. ...++.|++.+++|.++.. .+...|..+..++.....+. ..|++++++.++. ++++
T Consensus 105 ~~~~~l--~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~v~~~~~~~~------------~~~~~~l~~~~~~---~~~~ 166 (386)
T PRK07550 105 AAMVTL--AGAGDEVILPLPWYFNHKM-WLDMLGIRPVYLPCDEGPGL------------LPDPAAAEALITP---RTRA 166 (386)
T ss_pred HHHHHh--cCCCCEEEEcCCCCcchHH-HHHhcCCEEEEEecCCCcCC------------CCCHHHHHHHhcc---cCcE
Confidence 998842 3456778888888866533 33344443322211100111 0178889998874 3455
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-Cc-cccccCCCCc---eeehhhhcC-CCcce
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GG-AQEYFGVTPD---LTTLGKIIG-GGLPV 322 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~-~~~~~g~~pd---i~t~sK~l~-~G~~i 322 (474)
|++..++|++|.+.+.+ .+++|.++|++||++||+||+|.+| ..+. .. .....+...+ +.+|||.++ +|+|+
T Consensus 167 v~~~~P~NPtG~~~~~~-~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri 245 (386)
T PRK07550 167 IALVTPNNPTGVVYPPE-LLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRV 245 (386)
T ss_pred EEEeCCCCCCCcccCHH-HHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccce
Confidence 45444557788877644 4999999999999999999999887 3221 11 1111111222 348999999 89999
Q ss_pred EEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeee
Q 011959 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (474)
Q Consensus 323 G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (474)
||+++++++++.+.. .....+.+.+.+++.++...++.+++ +...+.++++.+.+.+.|.+. .++ ...+..
T Consensus 246 G~i~~~~~~~~~~~~---~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~-~~~~~g 318 (386)
T PRK07550 246 GAVVASPARIAEIEK---FMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARL---PGW-ELLASG 318 (386)
T ss_pred EeeecCHHHHHHHHH---HHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhC---CCc-eeCCCc
Confidence 999999999887763 22333556678888888877754322 233444555555555555543 122 112334
Q ss_pred ceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecC-CcHHHHHHHHHHHHHH
Q 011959 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKV 470 (474)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~-~t~e~i~~~l~~l~~~ 470 (474)
|.++|+.+.... ....++++.|+ ++||.+.|+. ...+|+++. .+++++++++++|.++
T Consensus 319 ~~~~~~~~~~~~------------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 319 AYFAYVRHPFPD------------RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred eEEEEecCCCCC------------CCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 566676653211 11256777765 6799998852 346788876 4799999999999875
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-24 Score=217.79 Aligned_cols=331 Identities=12% Similarity=0.052 Sum_probs=203.2
Q ss_pred CHHHHHHHHHHHHhc----CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHhHhh-cCCcEEE
Q 011959 117 DDQVLAALGETMKKG----TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAF-TGRERII 185 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~----~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~al~~ar~~-~~~~~ii 185 (474)
+..+++++.+.++.. ..|+ +..++++++++++.+..+ ..++|++|+|+++|+..+++. .. ..++.|+
T Consensus 90 P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~--l~~~~gD~Vl 167 (481)
T PTZ00377 90 PADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQL--LIGDPSDGVM 167 (481)
T ss_pred CHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHH--hccCCCCEEE
Confidence 457778777666542 1122 235678888888876543 578999999999999999984 22 3567899
Q ss_pred EEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC---CCCeEEEEEccccCCCCcc
Q 011959 186 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFI 262 (474)
Q Consensus 186 ~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i 262 (474)
+.+++|.++... +...|..+..++.....++ . -|+++|++.++.. ..+++++++..++|++|.+
T Consensus 168 v~~P~y~~y~~~-~~~~g~~~v~v~~~~~~~~---------~---~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~ 234 (481)
T PTZ00377 168 IPIPQYPLYSAA-ITLLGGKQVPYYLDEEKGW---------S---LDQEELEEAYEQAVRNGITPRALVVINPGNPTGQV 234 (481)
T ss_pred ECCCCchhHHHH-HHHcCCEEEEEEeccccCC---------C---CCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcC
Confidence 989999875433 3334433322211111111 0 1789999988631 1256665555557889988
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC-CCc-cc-cc-cCCCC------cee---ehhhhc-C-CCcceEEEE
Q 011959 263 APKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGG-AQ-EY-FGVTP------DLT---TLGKII-G-GGLPVGAYG 326 (474)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~~~-~~-~~-~g~~p------di~---t~sK~l-~-~G~~iG~~~ 326 (474)
.+.++ +++|.++|++||++||+||+|..+ ..+ ..+ .. .. .++.+ .++ +|||++ + +|||+||++
T Consensus 235 ~s~e~-~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~ 313 (481)
T PTZ00377 235 LTRDV-MEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFE 313 (481)
T ss_pred CCHHH-HHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEE
Confidence 87666 999999999999999999999877 432 221 11 10 11211 233 699985 6 799999998
Q ss_pred e---cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-C----CHHHH-------HHHHHHHHHHHHHHHhhhc
Q 011959 327 G---RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-P----GTYEY-------LNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 327 ~---~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~----~~~~~-------~~~~~~~l~~~L~~~~~~~ 391 (474)
+ ++++++.+... . ...++.|++++.++.++|+.... + .+.++ ++++.+.+.+.|+++ .
T Consensus 314 ~~~~p~~li~~l~~~---~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~---~ 386 (481)
T PTZ00377 314 LTNIPPEVREQIYKL---A-SINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKI---E 386 (481)
T ss_pred EeCCCHHHHHHHHHH---h-heecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C
Confidence 6 89998888632 1 22346788999999888853211 1 12222 334444444444432 1
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccc--cccchHHHHHH-HHHHHHCCeEecccC-------CcceEEecCCcHHHHH
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDA--KKSETTKFARF-YRGMLEEGVYFAPSQ-------FEAGFTSLAHSSDDIQ 461 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~-~~~l~~~Gv~v~~~~-------~~~~~~~~~~t~e~i~ 461 (474)
++....+..|+++|+.+..+. ..... ...... ...+ .+.|.++||.+.|+. .+++|+++..++++++
T Consensus 387 g~~~~~p~gg~fl~~~~~l~~--~~~~~~~~~~~~~-~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~ 463 (481)
T PTZ00377 387 GVSCQPVEGAMYAFPRIELPE--KAIQEAKERGLAP-DVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIE 463 (481)
T ss_pred CcEeecCCeeEEEEeeccCch--hhHHHHHhcCCCc-HHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHH
Confidence 333223334566665543110 00000 000000 1223 455567899998863 1358898888889999
Q ss_pred HHHHHHHHHHhh
Q 011959 462 HTITAAEKVLRQ 473 (474)
Q Consensus 462 ~~l~~l~~~~~~ 473 (474)
+++++|.+++++
T Consensus 464 ~~l~rl~~~~~~ 475 (481)
T PTZ00377 464 EMVKKIKEFHES 475 (481)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=208.95 Aligned_cols=302 Identities=15% Similarity=0.097 Sum_probs=199.6
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~ 178 (474)
.++||+.+|. +++|...+.+.+ ..+.. | +... .+|.+.+++++ +.++|++++|+++++..++. .
T Consensus 20 ~~~i~l~~ne--~p~~~~~~~~~~---~~~~~---y--p~~~-~~Lr~~ia~~~-~~~~I~it~Gs~~al~~~~~---~- 83 (330)
T PRK05664 20 ADWLDLSTGI--APWPWPVPAIPA---DAWAR---L--PETD-DGLEAAARAYY-GAPQLLPVAGSQAAIQALPR---L- 83 (330)
T ss_pred HHheeecCCc--CCCCCCCcccCH---HHHHh---C--CCCh-HHHHHHHHHHh-CCCCEEECcCHHHHHHHHHH---c-
Confidence 3578888887 777876444432 22222 2 2222 56777777777 57899999999999988764 2
Q ss_pred cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCC
Q 011959 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (474)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (474)
..++.|++.+|+|.+....+ ...|. +++.+| ++++++.+++ ....++++| +|+
T Consensus 84 ~~gd~v~v~~P~y~~~~~~~-~~~g~-------------------~~~~v~---~~~~~~~~~~---~~~v~l~nP-~NP 136 (330)
T PRK05664 84 RAPGRVGVLSPCYAEHAHAW-RRAGH-------------------QVRELD---EAEVEAALDS---LDVLVVVNP-NNP 136 (330)
T ss_pred cCCCEEEEcCCChHHHHHHH-HHcCC-------------------eEEEec---hhhHhhhhcC---CCEEEEeCC-cCC
Confidence 35678999999998754332 22232 234443 3456666542 224566666 478
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEecHHHHH
Q 011959 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIME 333 (474)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~i~~ 333 (474)
+|.+.+.++ +++|.++|+++|++||+||+|.++ ...... . +.-.++++ ||||++| +|+|+||+++++++++
T Consensus 137 TG~~~s~~~-l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~--~-~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~ 212 (330)
T PRK05664 137 TGRRFDPAR-LLAWHARLAARGGWLVVDEAFMDNTPQHSLA--A-CAHRPGLIVLRSFGKFFGLAGARLGFVLAEPALLR 212 (330)
T ss_pred CCCccCHHH-HHHHHHHHHhcCCEEEEECCcccCCCccccc--c-cccCCCEEEEeeccccccCCCcceEEEEeCHHHHH
Confidence 898887666 999999999999999999999877 322111 1 11123433 7999999 8999999999999999
Q ss_pred hhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCC
Q 011959 334 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (474)
Q Consensus 334 ~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (474)
.+... ..+++.+.+++.++.++|+.... +..++.++++.+++.+.|++ +++.. ..+.+.++++.+.
T Consensus 213 ~~~~~-----~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~-~~~~~~f~~~~~~--- 279 (330)
T PRK05664 213 ALAEL-----LGPWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRR----HGLTP-AGGCALFQWVRTE--- 279 (330)
T ss_pred HHHHh-----cCCCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH----CCCcc-cCCcceEEEEecC---
Confidence 88732 12456678888888888863211 33445555555555555554 33321 1222345555431
Q ss_pred CcCcccccccchHHHHHHHHHHHHCCeEecccC-CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+ ...+.+.|.++||.+...+ .+++|+++..++++++++++.|+++.++
T Consensus 280 ----------~---~~~~~~~l~~~gi~v~~f~~~~~iRis~~~~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 280 ----------D---AAALHEFLARRGILTRLFEQPASLRFGLPADEADWARLDQALLAYRKE 328 (330)
T ss_pred ----------C---HHHHHHHHHHCCeEEEECCCCCeEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 1 2578888999999998653 3467888877888999999999887654
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=211.87 Aligned_cols=295 Identities=16% Similarity=0.147 Sum_probs=191.7
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF 178 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~ 178 (474)
++|||..|. |+++ ...... .||.....+|.+.+++++. ..++|++++|+++++..++++ .
T Consensus 17 ~~i~l~~Ne--np~~------------~~~~~~--~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~---~ 77 (332)
T PRK06425 17 RIIDFSANI--NDFM------------DIGDIS--IYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSY---I 77 (332)
T ss_pred CEEEecccc--CCCc------------Chhhcc--cCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH---h
Confidence 578888886 5553 011122 2466667889999998886 578999999999999998863 3
Q ss_pred cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC----CHHHHHHHHhcCCCCeEEEEEcc
Q 011959 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN----DVSALENLFENNKGEIAAIILEP 254 (474)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~----d~~~le~~l~~~~~~~a~vi~ep 254 (474)
++++|++.+|+|..+...+ ...|..+ ..+|.+ |.+.+ +.. ++++|+++.
T Consensus 78 -~~~~vv~~~P~y~~y~~~~-~~~G~~v-------------------~~vp~~~~~~~~~~l----~~~--~~k~v~l~n 130 (332)
T PRK06425 78 -NVGNIIIVEPNFNEYKGYA-FTHGIRI-------------------SALPFNLINNNPEIL----NNY--NFDLIFIVS 130 (332)
T ss_pred -CCCcEEEeCCChHHHHHHH-HHcCCeE-------------------EEEeCCcccCcHHHH----hhc--CCCEEEEeC
Confidence 3356888899987754433 3334322 222221 33333 222 455666666
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEecH
Q 011959 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRR 329 (474)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~ 329 (474)
++|++|.+.+.++ +++|.++|++||++||+||+|..| ..+........+-.++++ ||||+++ +|+|+||+++++
T Consensus 131 P~NPTG~~~s~~~-~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~ 209 (332)
T PRK06425 131 PDNPLGNLISRDS-LLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDD 209 (332)
T ss_pred CCCCcCCccCHHH-HHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCH
Confidence 6788998887666 999999999999999999999988 433211111122223443 7999999 999999999999
Q ss_pred HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEE
Q 011959 330 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 405 (474)
Q Consensus 330 ~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~ 405 (474)
++++.+... ...++.+.+++.+ +..... +...+.++++++++.+.|++ +++....++.|++++
T Consensus 210 ~li~~l~~~-----~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~g~~~~~~~~g~f~~ 276 (332)
T PRK06425 210 YNMKISRKI-----TEPWSVCDPAIDF----IRSIDLDYVAKHSLDIMENERSYLINNLEA----MGFRAAGDPSANFIT 276 (332)
T ss_pred HHHHHHHHc-----CCCCccCHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----CCCEECCCCCceEEE
Confidence 999988731 1233444443322 221111 23344455555555555554 343222245688888
Q ss_pred EEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC------cceEEecCCcHHHHHHHHHHHHHHH
Q 011959 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
+.+.+ ..++.+.|+++||.+.++.. +++|+++. +.+++++++++|++++
T Consensus 277 ~~~~~----------------~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 277 FMIPD----------------AHDFYSYLLKNGILVRLLDDYECLGEQYIRIAIR-RRSFNIKLVNALRNFL 331 (332)
T ss_pred EEcCC----------------HHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC-CHHHHHHHHHHHHHHh
Confidence 87631 25788899999999988631 35677755 6789999999999875
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-24 Score=210.56 Aligned_cols=319 Identities=16% Similarity=0.117 Sum_probs=203.7
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar 176 (474)
++.+|||..|. ++++ .+|.+.+++.+.+.... ..|+.....+|.+.+++++. ..++|++|+|+++++..+++.
T Consensus 23 ~~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~-~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~-- 96 (353)
T PRK05387 23 LAKLIKLNTNE--NPYP-PSPKVLEAIRAALGDDL-RLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLA-- 96 (353)
T ss_pred ccceeeccCCC--CCCC-CCHHHHHHHHHHhhhhh-hcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHH--
Confidence 35688998885 3444 47899999998776422 12233333677777777775 578999999999999999984
Q ss_pred hhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
....++.|++.+++|..+ .......|..+..++.....+ -|++++++ ..++|++..++
T Consensus 97 l~~~gd~vlv~~P~y~~~-~~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~-------~~~~v~~~~P~ 154 (353)
T PRK05387 97 FFNHDRPLLFPDITYSFY-PVYAGLYGIPYEEIPLDDDFS--------------IDVEDYLR-------PNGGIIFPNPN 154 (353)
T ss_pred hcCCCCEEEEeCCCHHHH-HHHHHHcCCEEEEeecCCCCC--------------CCHHHHHh-------cCCEEEEeCCC
Confidence 234567788888888543 333344444332221110000 16777652 12445555557
Q ss_pred CCCCcccCCHHHHHHHHHHHHHh-CCEEEEeccccCcccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEecHHH
Q 011959 257 GNSGFIAPKPDFLNAIRRITKEN-GALLIFDEVMTGFRLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDI 331 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~i 331 (474)
|++|.+.+ .+++.+|++++ ++++|+||+|..|..... ....+..++++ +|||.++ +|+|+||+++++++
T Consensus 155 NPtG~~~~----~~~~~~l~~~~~~~~livDe~y~~~~~~~~--~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~ 228 (353)
T PRK05387 155 APTGIALP----LAEIERILAANPDSVVVIDEAYVDFGGESA--IPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPEL 228 (353)
T ss_pred CCCCCCCC----HHHHHHHHHhCCCcEEEEeCcccccCCcch--HHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHH
Confidence 88999998 45555556554 999999999987621111 11111123332 7999999 89999999999999
Q ss_pred HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEec
Q 011959 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410 (474)
Q Consensus 332 ~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~ 410 (474)
++.+..... ...+++.+.+++.++.++|+..+. ++..++++++.+++.+.|++ +++. ..+..|.++++.+..
T Consensus 229 ~~~l~~~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~-~~~~~~~~~~~~~~~ 301 (353)
T PRK05387 229 IEALNRVKN--SFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEA----LGFE-VLPSKANFVFARHPS 301 (353)
T ss_pred HHHHHHhhc--cCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----CCCe-ECCCcCcEEEEECCC
Confidence 988863211 123566788888888887752111 33445555555666666554 3432 234456666665421
Q ss_pred CCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
. ...++.+.|.++||.+.+.+ ...+|+++. +++++++++++|++++.
T Consensus 302 ~--------------~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~-~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 302 H--------------DAAELAAKLRERGIIVRHFNKPRIDQFLRITIG-TDEEMEALVDALKEILA 352 (353)
T ss_pred C--------------CHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHHHhh
Confidence 1 12578888999999986553 235788765 77999999999999875
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-24 Score=209.83 Aligned_cols=315 Identities=15% Similarity=0.100 Sum_probs=205.7
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhCC----CCCeEEEeCCHHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP----SIEMVRFVNSGTEACM 169 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---~~~~~~~~la~~l~~~~~----~~~~v~~~~sGseA~~ 169 (474)
++..++|+.++ ++....+|.+.+++.+.... ..|. +..+++.++++++.++++ ..++|++|+|+++++.
T Consensus 19 ~~~~~i~l~~~---~p~~~~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~ 94 (357)
T TIGR03539 19 HPDGIVDLSVG---TPVDPVPPLIRAALAAAADA-PGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVA 94 (357)
T ss_pred CCCCeEEccCC---CCCCCCCHHHHHHHHHHHhh-CCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHH
Confidence 44567888887 44444578899988776543 2232 345778889988877643 3589999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (474)
.++++. ....++.|++.+++|.+.... +...|.. ++.+ ++++.++ . +++++
T Consensus 95 ~~~~~l-~~~~gd~Vl~~~p~y~~~~~~-~~~~g~~-------------------~~~v--~~~~~l~----~--~~~~~ 145 (357)
T TIGR03539 95 WLPTLL-GLGPGDTVVIPELAYPTYEVG-ALLAGAT-------------------PVAA--DDPTELD----P--VGPDL 145 (357)
T ss_pred HHHHHH-cCCCCCEEEECCCCcHHHHHH-HHhcCCE-------------------Eecc--CChhhcC----c--cCccE
Confidence 887731 124567888889999765433 2222321 1111 2333332 1 35788
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-ccc--cCC-CCc-ee--ehhhhcC-CCc
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEY--FGV-TPD-LT--TLGKIIG-GGL 320 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~--~g~-~pd-i~--t~sK~l~-~G~ 320 (474)
|+++.++|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+.... ... .+. ... ++ +|||.++ +|+
T Consensus 146 v~~~~p~NPtG~~~~~~~-~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~ 224 (357)
T TIGR03539 146 IWLNSPGNPTGRVLSVDE-LRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGY 224 (357)
T ss_pred EEEeCCCCCcCccCCHHH-HHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCce
Confidence 888888888999887766 999999999999999999999877 4332211 110 011 112 22 7999996 899
Q ss_pred ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee
Q 011959 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (474)
|+||+++++++++.+.. ......++.+.+++.++.++|+.... ......++++.+.+.+.|++ .++....+.
T Consensus 225 R~G~~i~~~~~~~~~~~---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~----~g~~~~~p~ 297 (357)
T TIGR03539 225 RAGFVAGDPALVAELLT---VRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEK----AGFRIDHSE 297 (357)
T ss_pred eEEEEecCHHHHHHHHH---HHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH----cCCCCcCCC
Confidence 99999999999888763 22223456788888888777742110 22334444555555555544 343222233
Q ss_pred eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------CcceEEecCCcHHHHHHHHHHH
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAA 467 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l 467 (474)
.|.++++.+.. ....+.+.|.++||.+.|+. .+++|+++..+++++++++++|
T Consensus 298 ~~~~~~~~~~~---------------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~~~~~i~~~~~~l 356 (357)
T TIGR03539 298 AGLYLWATRGE---------------DAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARL 356 (357)
T ss_pred ccEEEEEECCC---------------CHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence 45555555421 12467788889999998863 2467888888899999999876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=210.44 Aligned_cols=301 Identities=16% Similarity=0.080 Sum_probs=199.4
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar 176 (474)
.+++||.+|. |++|.+.+.+.. ..+.. ||... .+|.+.++++++ ..++|+++||++|++....+
T Consensus 24 ~~~i~ls~Ne--np~~~~~~~~~~---~~~~~-----Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~--- 89 (339)
T PRK06959 24 DAWLDLSTGI--NPHGYPVPPVPA---DAWRR-----LPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA--- 89 (339)
T ss_pred hhhceeccCC--CCCCCCCCCCCH---HHHHh-----CCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH---
Confidence 4689999997 888876333321 22222 35544 789999999886 24799999999999986544
Q ss_pred hhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
.+ ++++|++.+++|.++...+ ...|. +++.++.++ +.+ .+. -..+++++| +
T Consensus 90 ~~-~~g~v~v~~P~y~~y~~~~-~~~g~-------------------~~~~v~~~~-~~~----~~~--~~~v~l~nP-n 140 (339)
T PRK06959 90 LL-PRGRVGIAPLAYSEYAPAF-ARHGH-------------------RVVPLDEAA-DTL----PAA--LTHLIVVNP-N 140 (339)
T ss_pred hc-CCCeEEEcCCCcHHHHHHH-HHCCC-------------------EEEeecccc-hhc----ccc--CCEEEEeCC-C
Confidence 33 3456888889987754333 22232 123333322 222 111 124566666 5
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEecHHH
Q 011959 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDI 331 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~i 331 (474)
|++|.+.+.++ +++|.+.|.++++++|+||+|..| ..... ....+ .++++ ||||.+| +|+|+||+++++++
T Consensus 141 NPTG~~~s~~~-l~~l~~~~~~~~~~vI~DEay~~~~~~~s~--~~~~~-~~~vi~l~SfSK~~gl~GlRiGy~v~~~~l 216 (339)
T PRK06959 141 NPTAERLPAAR-LLRWHAQLAARGGTLIVDEAFADTLPAASL--AAHTD-RPGLVVLRSVGKFFGLAGVRAGFVLAAPAL 216 (339)
T ss_pred CCCCCCCCHHH-HHHHHHHHHHcCCEEEEECCCccCCCcccc--hhccC-CCCEEEEecChhhcCCcchheEEEecCHHH
Confidence 78898887666 888888899999999999999887 32111 11111 23433 8999999 89999999999999
Q ss_pred HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEec
Q 011959 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410 (474)
Q Consensus 332 ~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~ 410 (474)
++.+... ...++.|.+++.++.++|+.-.- +...+.++++++++.+.|+++ ++. +...++++++.+.+
T Consensus 217 i~~l~~~-----~~~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~----g~~--~~~~~~f~~~~~~~ 285 (339)
T PRK06959 217 LAALRDA-----LGAWTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH----GFA--VHATPLFSWTDDPR 285 (339)
T ss_pred HHHHHHh-----cCCCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC----CCC--ccCcceEEEEeCCC
Confidence 9988742 13566788899998888852111 334455555555566665553 322 12345566665421
Q ss_pred CCCcCcccccccchHHHHHHHHHHHHCCeEecccC-CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
..++.+.|.++||+++..+ .+++|+++..+++++++++++|+++++.
T Consensus 286 ----------------~~~l~~~l~~~GI~vr~~~~~~~lRisi~~~~~e~~~l~~al~~~~~~ 333 (339)
T PRK06959 286 ----------------AAALHAALARRGIWTRYFAPPPSVRFGLPADEAEWQRLEDALAECVPT 333 (339)
T ss_pred ----------------HHHHHHHHHhCCeEEEECCCCCeEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 2578899999999998753 3467888877899999999999988764
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=212.59 Aligned_cols=319 Identities=17% Similarity=0.167 Sum_probs=209.7
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF 178 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~ 178 (474)
.+|||..+. ..+| .++.+.+++.+.+.....| +.....++.+.+++++. ..++|++++|.++++..+++. ..
T Consensus 23 ~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~y--~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~--~~ 95 (352)
T PRK03321 23 GAIKLSSNE--TPFG-PLPSVRAAIARAAAGVNRY--PDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQA--TA 95 (352)
T ss_pred cceeccCCC--CCCC-CCHHHHHHHHHHHHhcCcC--CCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHH--hc
Confidence 378888774 3344 4678999998877653333 34445667777777765 567899999888888888773 23
Q ss_pred cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCC
Q 011959 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (474)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (474)
..++.|++..++|..+ .......|..+..++.....+ .|++.+++.++. ++++|+++.++|+
T Consensus 96 ~~gd~Vli~~p~y~~~-~~~~~~~g~~~~~v~~~~~~~--------------~~~~~l~~~~~~---~~~~v~l~~p~NP 157 (352)
T PRK03321 96 GPGDEVIFAWRSFEAY-PILVQVAGATPVQVPLTPDHT--------------HDLDAMAAAITD---RTRLIFVCNPNNP 157 (352)
T ss_pred CCCCEEEeCCCCHHHH-HHHHHHcCCEEEEccCCCCCC--------------CCHHHHHHhhcc---CCCEEEEeCCCCC
Confidence 4567788877777432 223333343322211110011 178899888863 4567777677788
Q ss_pred CCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-ccCCC-ccccccCCCCcee---ehhhhcC-CCcceEEEEecHH
Q 011959 259 SGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRD 330 (474)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~ 330 (474)
+|.+.+ .+++.++|++ +++++|+||+|.+| ..+.. .....+...++++ +|||.++ +|+|+||++++++
T Consensus 158 tG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~ 233 (352)
T PRK03321 158 TGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPE 233 (352)
T ss_pred cCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHH
Confidence 999998 5666677666 69999999999888 54321 1122222334554 7999999 8999999999999
Q ss_pred HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEe
Q 011959 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (474)
Q Consensus 331 i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (474)
+++.+.. . ..+++.+++++.++.++|+.... .+..+++.+..+.+.+.|++ .++. ..+..|+++++.+.
T Consensus 234 ~~~~~~~---~--~~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~----~~~~-~~~~~g~~i~i~l~ 303 (352)
T PRK03321 234 VIAALRK---V--AVPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRA----AGWT-VPPSQANFVWLPLG 303 (352)
T ss_pred HHHHHHH---h--cCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----CCCc-cCCCCCCEEEEeCC
Confidence 9998873 1 24577889999988888853221 12222233333444444443 3332 12345778777763
Q ss_pred cCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.. ...+.+.|.++||.+.+.+...+|+++ .+.+++++++++|++++.-
T Consensus 304 ~~---------------~~~~~~~l~~~gI~v~~~~~~~iRi~~-~~~~~~~~~~~al~~~~~~ 351 (352)
T PRK03321 304 ER---------------TADFAAAAAEAGVVVRPFAGEGVRVTI-GAPEENDAFLRAARAWRAG 351 (352)
T ss_pred CC---------------HHHHHHHHHHCCEEEEccCCCcEEEee-CCHHHHHHHHHHHHHHhcc
Confidence 11 257888899999999987655688875 5889999999999998754
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-24 Score=210.59 Aligned_cols=319 Identities=14% Similarity=0.102 Sum_probs=207.4
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHh
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLA 175 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~-~~~v~~~~sGseA~~~al~~a 175 (474)
++.++|+..|. ++++ .+|.+++++.+.+......+|+.....+|.+.+++++. . .++|++++|+++++..+++.
T Consensus 25 ~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~- 100 (356)
T PRK04870 25 ATGMVKLDAME--NPYR-LPAELRAELGERLAEVALNRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALA- 100 (356)
T ss_pred CCCceeCcCCC--CCCC-CCHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHH-
Confidence 46788887773 4444 68899999999886532223333334667777777765 2 24899999999999998884
Q ss_pred HhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
....++.|++.+++|.++. ......|..+..++.....+ -|++++++.++.+ ++++|++..+
T Consensus 101 -~~~~gd~vlv~~P~y~~~~-~~~~~~g~~~~~i~~~~~~~--------------~d~~~l~~~~~~~--~~~~v~l~~p 162 (356)
T PRK04870 101 -CAKPGATVLAPEPGFVMYR-MSAKLAGLEFVGVPLTADFT--------------LDLPAMLAAIAEH--RPALVFLAYP 162 (356)
T ss_pred -hcCCCCEEEECCCCHHHHH-HHHHHcCCEEEEecCCCCCC--------------CCHHHHHHHhhcC--CCCEEEEcCC
Confidence 2345678898898887643 33344454333222111011 1789999988643 5667777666
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCce---eehhhhcC-CCcceEEEEecHHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL---TTLGKIIG-GGLPVGAYGGRRDI 331 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi---~t~sK~l~-~G~~iG~~~~~~~i 331 (474)
+|++|.+.+.++ +++|.++| ++++|+||+|..|...... ....-.+++ .+||| ++ +|+|+||+++++++
T Consensus 163 ~NPtG~~~~~~~-~~~i~~~~---~~~ii~De~y~~~~~~~~~--~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~ 235 (356)
T PRK04870 163 NNPTGNLFDDAD-VERIIEAA---PGLVVVDEAYQPFAGDSWL--PRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAW 235 (356)
T ss_pred CCCCCCCCCHHH-HHHHHHHC---CCEEEEECCchhhcCcchH--HHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHH
Confidence 788999988554 66666666 7899999999877211111 111111233 37999 77 79999999999999
Q ss_pred HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEec
Q 011959 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410 (474)
Q Consensus 332 ~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~ 410 (474)
++.+.... ..++.+.+++.++..+++..+. ++..++++++.+.+.+.|+++ .++ ...+..|.++++.+.+
T Consensus 236 i~~~~~~~-----~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~-~~~~~~~~~~~~~~~~ 306 (356)
T PRK04870 236 IAELDKVR-----PPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAAL---PGV-TVFPSAANFILVRVPD 306 (356)
T ss_pred HHHHHHcc-----CCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC---CCc-EECCCCCeEEEEECCC
Confidence 98886321 2356677888887777753211 334455555556666555542 122 2234567777776531
Q ss_pred CCCcCcccccccchHHHHHHHHHHHHCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
...+.+.|.++||.+.++. .+++|+++. +.+++++++++|++++
T Consensus 307 ----------------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 307 ----------------AAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG-TPEENAQFLAALKAAL 356 (356)
T ss_pred ----------------HHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC-CHHHHHHHHHHHHHhC
Confidence 1467788899999998752 235677766 6899999999998763
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=223.79 Aligned_cols=351 Identities=11% Similarity=0.062 Sum_probs=216.8
Q ss_pred EEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CC---CeEEEeCCHHHH
Q 011959 92 HMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI---EMVRFVNSGTEA 167 (474)
Q Consensus 92 ~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~---~~v~~~~sGseA 167 (474)
++.+.+|..+|++..|- +.++ .+|.+++++.+.+.+...+.+..+++.+++++++++++ .. ++|++++|.+++
T Consensus 690 ~~~~~~g~~vI~LsinE--~d~p-pPp~V~eAi~eal~~~~~s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~el 766 (1082)
T PLN02672 690 SVSGSQESSLIHMDVDE--SFLP-VPSAVKASIFESFVRQNISESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLAL 766 (1082)
T ss_pred CCcccCCCCEEEEeCCC--CCCC-CCHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHH
Confidence 34556788899998884 3444 78999999998876643322345678999999999875 22 489999988888
Q ss_pred HHHHHHHhHhhc-CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 168 CMGVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 168 ~~~al~~ar~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
+..+++ ++. +++.|++.+|+|..+. ......|..+..++.....++. -|++.|++.++.. ..
T Consensus 767 L~lll~---aLl~pGD~VLVp~PtY~~Y~-~~a~~~Ga~vv~Vpl~~e~gf~------------lD~d~Le~al~~~-~~ 829 (1082)
T PLN02672 767 FNKLVL---CCVQEGGTLCFPAGSNGTYV-SAAKFLKANFRRIPTKSSDGFK------------LTAKTLASTLETV-KK 829 (1082)
T ss_pred HHHHHH---HHcCCCCEEEEeCCChHHHH-HHHHHcCCEEEEEecccccCCC------------CCHHHHHHHhccC-CC
Confidence 888887 444 4578888888887744 4444445544332221111210 1788999988642 12
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc---cc-c---cc-CCCC--cee---eh
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG---AQ-E---YF-GVTP--DLT---TL 312 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~---~~-~---~~-g~~p--di~---t~ 312 (474)
..+++++|++|++|.+.+.++ +++|.++|++||++||+||+|.++ ..+... .. + .+ ...+ .++ +|
T Consensus 830 ~~I~L~nPnhNPTG~v~S~ee-Le~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~Sf 908 (1082)
T PLN02672 830 PWVYISGPTINPTGLLYSNSE-IEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGL 908 (1082)
T ss_pred CEEEEECcCCCCcCccCCHHH-HHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCc
Confidence 456777787688998887666 999999999999999999999988 544221 00 0 11 1112 232 79
Q ss_pred hhhcC-CCcceEEEEecH-HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHH
Q 011959 313 GKIIG-GGLPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG-------TYEYLNKITGELTQG 383 (474)
Q Consensus 313 sK~l~-~G~~iG~~~~~~-~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~-------~~~~~~~~~~~l~~~ 383 (474)
||.++ +|||+||+++++ ++++.+..... ....+..+.+++.+++++++. +..+ ..+.++++.+++.+.
T Consensus 909 SKkf~lpGLRIGylIap~~eLi~~l~~~~~--~s~~~~~~q~Aaaaalall~~-~~~~~~~~l~e~r~~Lk~rRd~L~e~ 985 (1082)
T PLN02672 909 STELLSGGHEFGFLALNDSVLIDAFHSAPG--LSRPHSTLKYTIKKLLGLKNQ-KSSDLLDGVAEQKKILKSRAERLKET 985 (1082)
T ss_pred HHhhccHHHHheeEEeCCHHHHHHHHHhhh--hcCCCcHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 799999999864 58888763110 111112223333333333310 1122 233344555555555
Q ss_pred HHHHhhhcCCeeEEeee-ceeEEEEEecCCCcCcccccccc-----hHHHHHHHHHHHHC-CeEecccCC----cceEEe
Q 011959 384 IIDAGKKAGHAICGGYI-SGMFGFFFTEGPVYNFEDAKKSE-----TTKFARFYRGMLEE-GVYFAPSQF----EAGFTS 452 (474)
Q Consensus 384 L~~~~~~~~~~~~v~~~-g~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~-Gv~v~~~~~----~~~~~~ 452 (474)
|++ +++. ..++. |.++|+.+..-.... .....++ .....++++.|+++ ||.+.|+.. +++|++
T Consensus 986 L~~----~Gi~-v~~PeGGFfLwl~l~~~l~~~-~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIs 1059 (1082)
T PLN02672 986 LEA----CGWD-VLEPQGGISMVAKPSAYLGKT-VKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFS 1059 (1082)
T ss_pred HHH----CCCe-EecCCcEEEEEEEcccccccc-ccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEE
Confidence 544 4443 33444 445555432100000 0000000 01235788888865 999998732 467899
Q ss_pred cCCcHHHHHHHHHHHHHHHh
Q 011959 453 LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~~ 472 (474)
++.+++++++++++|+++.+
T Consensus 1060 fa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1060 FALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred ecCCHHHHHHHHHHHHHHHH
Confidence 99999999999999998754
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-24 Score=208.27 Aligned_cols=301 Identities=18% Similarity=0.169 Sum_probs=198.1
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 177 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~ 177 (474)
.+.+||..|+ +.++. | ..+.. ......| ++....+|.++++++++ ..+++++++|+++++..+.+ .
T Consensus 17 ~~~~~~~~~~--~~~~~--~-~~~~~---~~~~~~y--~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~---~ 83 (330)
T TIGR01140 17 EDWLDFSTGI--NPLGP--P-VPPIP---ASAWARY--PDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPR---L 83 (330)
T ss_pred hheeEccccC--CCCCC--C-hhhcc---hHHHhhC--CCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHH---H
Confidence 3568888886 55543 2 22221 1111223 32224778888888776 46899999999999988665 3
Q ss_pred hcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccC
Q 011959 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (474)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (474)
+.++ +|++.+++|+.+... +...|. ++..++ |++.+++.++ ++++|+++.++|
T Consensus 84 l~~g-~vl~~~p~y~~~~~~-~~~~g~-------------------~~~~~~--d~~~l~~~~~----~~~~v~i~~p~N 136 (330)
T TIGR01140 84 LAPG-RVLVLAPTYSEYARA-WRAAGH-------------------EVVELP--DLDRLPAALE----ELDVLVLCNPNN 136 (330)
T ss_pred hCCC-eEEEeCCCcHHHHHH-HHHcCC-------------------EEEEeC--CHHHHHhhcc----cCCEEEEeCCCC
Confidence 4444 788889998875332 222222 234444 8899988874 234555555567
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEecHHHH
Q 011959 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIM 332 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~i~ 332 (474)
++|.+.+.++ +++|.++|++||+++|+||+|.+| ..... ....+..++++ +|||.+| +|+|+||++++++++
T Consensus 137 PtG~~~~~~~-~~~l~~~a~~~~~~ii~De~y~~~~~~~~~--~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~ 213 (330)
T TIGR01140 137 PTGRLIPPET-LLALAARLRARGGWLVVDEAFIDFTPDASL--APQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALL 213 (330)
T ss_pred CCCCCCCHHH-HHHHHHHhHhcCCEEEEECcccccCCccch--hhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHH
Confidence 8888876555 999999999999999999999887 32111 11112123333 8999999 899999999999999
Q ss_pred HhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCC
Q 011959 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (474)
Q Consensus 333 ~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (474)
+.+... ...++.++++++++.+.++ +.++.++.+++.+..++.+.+.+.+++.....++.|.|+|+.+..
T Consensus 214 ~~l~~~-----~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~f~~~~~~~-- 283 (330)
T TIGR01140 214 ARLREA-----LGPWTVNGPARAAGRAALA---DTAWQAATRARLAAERARLAALLARLGGLEVVGGTALFLLVRTPD-- 283 (330)
T ss_pred HHHHhc-----CCCCCchHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCCeEEEEEcCC--
Confidence 988742 2245677888888777775 334444455555555555555555555333345567777776531
Q ss_pred CcCcccccccchHHHHHHHHHHHHCCeEecccCC------cceEEecCCcHHHHHHHHHHH
Q 011959 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAA 467 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------~~~~~~~~~t~e~i~~~l~~l 467 (474)
..++++.|+++||++.|+.. +++|+++....++ ++++++|
T Consensus 284 --------------~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~-~~~~~~l 329 (330)
T TIGR01140 284 --------------AAALHEALARRGILIRDFDNFPGLDPRYLRFALPTDEEN-DRLEEAL 329 (330)
T ss_pred --------------HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEecCHHHH-HHHHHhh
Confidence 15788999999999998632 3578887766666 8877766
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-23 Score=207.17 Aligned_cols=332 Identities=16% Similarity=0.161 Sum_probs=209.3
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhC-C-CCCeEEEeCCHHHHHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAV-P-SIEMVRFVNSGTEACMGVLR 173 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---~~~~~~~~la~~l~~~~-~-~~~~v~~~~sGseA~~~al~ 173 (474)
..++||..|. ..++ .++.+.+++.+.......|+ +..+++.++++++...- + +.++|++++|+++|+..+++
T Consensus 30 ~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~ 106 (397)
T PRK07568 30 IKVYHLNIGQ--PDIK-TPEVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMM 106 (397)
T ss_pred CCEEEecCCC--CCCC-CCHHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHH
Confidence 3466776663 2222 36888888877654333332 23456667777665321 1 46799999999999999988
Q ss_pred HhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011959 174 LARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (474)
Q Consensus 174 ~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (474)
.. ...++.|++.+++|.... ......|..+..++.....++ ...+++.+++.++. ++++|++.
T Consensus 107 ~l--~~~gd~Vl~~~p~y~~~~-~~~~~~g~~~~~v~~~~~~g~-----------~~~~~~~l~~~~~~---~~~~v~i~ 169 (397)
T PRK07568 107 AI--CDPGDEILVPEPFYANYN-GFATSAGVKIVPVTTKIEEGF-----------HLPSKEEIEKLITP---KTKAILIS 169 (397)
T ss_pred Hh--cCCCCEEEEecCCCccHH-HHHHHcCCEEEEeecCcccCC-----------CCCCHHHHHHhcCc---cceEEEEE
Confidence 42 345678888888876543 333344443322211101111 01257888888753 45667665
Q ss_pred cccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC--ccccccCCCCcee---ehhhhcC-CCcceEEEE
Q 011959 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDLT---TLGKIIG-GGLPVGAYG 326 (474)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~--~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~ 326 (474)
.++|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+.. ......+..++++ +|||.++ +|+|+||++
T Consensus 170 ~p~NPtG~~~~~~~-~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~ 248 (397)
T PRK07568 170 NPGNPTGVVYTKEE-LEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLI 248 (397)
T ss_pred CCCCCCCccCCHHH-HHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEe
Confidence 55678898877666 999999999999999999999988 55432 1112222233443 7999999 699999998
Q ss_pred ec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-eece
Q 011959 327 GR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISG 402 (474)
Q Consensus 327 ~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~ 402 (474)
++ +++++.+.. ... .+++.+.+.+.++.++|+..++ +.+.+.++++.+.+.+.|++ ++...... ..|.
T Consensus 249 ~~~~~~~~~~~~---~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~p~g~~ 320 (397)
T PRK07568 249 SKNKELIAAAMK---LCQ-ARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNK----IPGVVCEKPKGAF 320 (397)
T ss_pred cCCHHHHHHHHH---Hhh-ccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhc----CCCceecCCCcce
Confidence 74 678876642 111 2457788888888887753211 22344445555555555543 32222233 3445
Q ss_pred eEEEEEecCCCcCcccccccchHHHHHHHHHHHH------CCeEecccC---------CcceEEecCCcHHHHHHHHHHH
Q 011959 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE------EGVYFAPSQ---------FEAGFTSLAHSSDDIQHTITAA 467 (474)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~Gv~v~~~~---------~~~~~~~~~~t~e~i~~~l~~l 467 (474)
++++.+... ...++.+.|++ +||.+.|+. .+++|+++..+++++++++++|
T Consensus 321 ~~~~~l~~~--------------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~~~~~~~~~l 386 (397)
T PRK07568 321 YIIAKLPVD--------------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAMEIL 386 (397)
T ss_pred EEEEecCCC--------------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHHHHHHHHHHH
Confidence 567666321 12456666664 599998852 1367888888899999999999
Q ss_pred HHHHhh
Q 011959 468 EKVLRQ 473 (474)
Q Consensus 468 ~~~~~~ 473 (474)
.+++++
T Consensus 387 ~~~l~~ 392 (397)
T PRK07568 387 KEALEK 392 (397)
T ss_pred HHHHHH
Confidence 998865
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-24 Score=214.24 Aligned_cols=337 Identities=16% Similarity=0.131 Sum_probs=203.7
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc------CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG------TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGT 165 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~------~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGs 165 (474)
|..++|+..|. ..++ .+|.+.+++.+.+.+. ..|+ +..+++..+++++.+..+ .+++|++|+|+.
T Consensus 33 ~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~ 109 (409)
T PRK07590 33 EAKIIRLGIGD--VTQP-LPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAK 109 (409)
T ss_pred CCceEEecCcC--CCCC-CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHH
Confidence 55677887773 2333 5788999999887652 1232 234567777777655443 578999999999
Q ss_pred HHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCC-CccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC
Q 011959 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (474)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (474)
+++...+. .+.+++.|++.+|+|.++...+. ..|.. +.. + .+. ..+++.++.+.-+.++.-+.+
T Consensus 110 ~al~~l~~---~~~~gd~V~v~~P~Y~~~~~~~~-~~g~~~~~~---~--~~~----~~~~~~v~~~~~~~~~~d~~~-- 174 (409)
T PRK07590 110 CDTGNILD---IFGPDNTIAVTDPVYPVYVDTNV-MAGRTGEAN---E--DGR----YSGIVYLPCTAENNFVPELPE-- 174 (409)
T ss_pred HHHHHHHH---hcCCCCEEEEeCCCCcchHHHHH-HcCCccccc---c--ccc----ccceeEeecccccCCcccCcc--
Confidence 99987544 45567889999999988654333 33321 100 0 000 001222222100001000111
Q ss_pred CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-cccccc-CCCCc---eeehhhhcC-
Q 011959 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF-GVTPD---LTTLGKIIG- 317 (474)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~-g~~pd---i~t~sK~l~- 317 (474)
.++++|++..++|++|.+.+.++ +++|.++|++||++||+||+|..| ..+.. -....+ +.... +-||||.++
T Consensus 175 ~~~k~i~l~nP~NPTG~~~s~~~-~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~ 253 (409)
T PRK07590 175 EKVDIIYLCFPNNPTGTVLTKEQ-LKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGF 253 (409)
T ss_pred cCceEEEEeCCCCCcCCcCCHHH-HHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCC
Confidence 25666766666788999887666 999999999999999999999888 44321 111111 11112 237999998
Q ss_pred CCcceEEEEecHHHHHhhcCCC--------CcccccCC-CCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHH
Q 011959 318 GGLPVGAYGGRRDIMEMVAPAG--------PMYQAGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGII 385 (474)
Q Consensus 318 ~G~~iG~~~~~~~i~~~~~~~~--------~~~~~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~ 385 (474)
+|+|+||+++++++++.+.... ......++ +.+.+++.++.++++.-.. +.+.+.++++.+.+.+.|+
T Consensus 254 pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~ 333 (409)
T PRK07590 254 TGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLE 333 (409)
T ss_pred cCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999887331000 00111222 4677888888777642100 2233444445555555554
Q ss_pred HHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHH
Q 011959 386 DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSD 458 (474)
Q Consensus 386 ~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e 458 (474)
+ +++....+..|+++|+.+... ....++++.++ ++||++.|+. .+++|+++..+++
T Consensus 334 ~----~~~~~~~~~g~~f~wi~~~~~-------------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~ 396 (409)
T PRK07590 334 S----AGFEVYGGVNAPYIWVKTPDG-------------MSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFGSRE 396 (409)
T ss_pred h----cCCceecCCcceEEEEECCCC-------------CCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccCCHH
Confidence 4 343222223567888877431 01245677776 5699998863 2357888777999
Q ss_pred HHHHHHHHHHHH
Q 011959 459 DIQHTITAAEKV 470 (474)
Q Consensus 459 ~i~~~l~~l~~~ 470 (474)
++++++++|.++
T Consensus 397 ~l~~~l~rl~~~ 408 (409)
T PRK07590 397 NVLEAMERIKKA 408 (409)
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=209.03 Aligned_cols=319 Identities=11% Similarity=0.092 Sum_probs=204.0
Q ss_pred eeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC----CCCeEEEeC
Q 011959 87 SVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP----SIEMVRFVN 162 (474)
Q Consensus 87 ~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~~v~~~~ 162 (474)
+++|.+-+...|+..||+..|- +.++ .+|.+++++.+.+.......|+.....+|.+.+++++. +.++|++|+
T Consensus 7 ~~~~~~~~~~~~~~~i~l~~~~--~~~~-~p~~~~~~~~~~~~~~~~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~ 83 (335)
T PRK14808 7 IAKRAYPYETEKRDRTYLALNE--NPFP-FPEDLVDEVFRRLNSDTLRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGN 83 (335)
T ss_pred hhccCcCCCCCCCceeEecCCC--CCCC-CCHHHHHHHHHHhhhhhhhcCCCCChHHHHHHHHHHhCCCCCCcceEEEcC
Confidence 4566666667888999998874 4555 68899999988775422111222234455555555543 478999999
Q ss_pred CHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhc
Q 011959 163 SGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (474)
Q Consensus 163 sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (474)
|+++++..+++. + +.|++.+++|.++... ....|..+..+ |..... .++.. .+.
T Consensus 84 Ga~~~i~~~~~~---~---d~v~v~~P~y~~~~~~-~~~~g~~~~~v--~~~~~~--------------~~~~~--~~~- 137 (335)
T PRK14808 84 GADEIIYVMMLM---F---DRSVFFPPTYSCYRIF-AKAVGAKFLEV--PLTKDL--------------RIPEV--NVG- 137 (335)
T ss_pred CHHHHHHHHHHH---h---CcEEECCCCHHHHHHH-HHHcCCeEEEe--cCCCcC--------------CCChh--Hcc-
Confidence 999999999983 4 5688889998875433 33334333221 111110 01111 122
Q ss_pred CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCce---eehhhhcC-C
Q 011959 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL---TTLGKIIG-G 318 (474)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi---~t~sK~l~-~ 318 (474)
..+++++..++|++|.+.+ .+++.+|+ +++++||+||+|..|...... ......+++ .+|||+++ +
T Consensus 138 ---~~~~i~i~nP~NPTG~~~s----~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~--~~~~~~~~vi~~~S~SK~~~l~ 207 (335)
T PRK14808 138 ---EGDVVFIPNPNNPTGHVFE----REEIERIL-KTGAFVALDEAYYEFHGESYV--DLLKKYENLAVIRTFSKAFSLA 207 (335)
T ss_pred ---CCCEEEEeCCCCCCCCCcC----HHHHHHHH-hcCCEEEEECchhhhcCCchH--HHHHhCCCEEEEEechhhccCc
Confidence 3466777777788999988 44455556 589999999999877211111 111112233 37999999 8
Q ss_pred CcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 319 G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
|+|+||+++++++++.+.... .+++.+.+++.++.++++..+. .+..+.+.++.+++.+.|++ .++. ..
T Consensus 208 GlRvG~~v~~~~~~~~l~~~~-----~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~----~g~~-~~ 277 (335)
T PRK14808 208 AQRIGYVVSSEKFIDAYNRVR-----LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALRE----MGYR-IT 277 (335)
T ss_pred ccceEEEEeCHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH----CCCE-EC
Confidence 999999999999999886321 2466788888888888763211 22233444444445544443 3432 23
Q ss_pred eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecCCcHHHHHHHHHHHHHH
Q 011959 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~t~e~i~~~l~~l~~~ 470 (474)
++.|.|+++.+... ....+.+.|.++||++.... ..+|+++ .+.++.+++++.|+++
T Consensus 278 ~~~g~f~~~~l~~~--------------~~~~~~~~l~~~Gi~V~~~~-~~~Risi-~~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 278 DSRGNFVFIFMEKE--------------EKERLLEHLRAKNIAVRSFR-EGVRITI-GKREENDMILKELEVF 334 (335)
T ss_pred CCCCeEEEEeCCCc--------------cHHHHHHHHHHCCeEEEECC-CCeEEec-CCHHHHHHHHHHHHhh
Confidence 56788888876421 12568889999999998653 5678874 4578999999998753
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-23 Score=207.96 Aligned_cols=333 Identities=12% Similarity=0.101 Sum_probs=213.6
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVL 172 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~al 172 (474)
.++||..+. ..++ .+|.+.+++.+.+... ..|+ +..+++..+++++.+.++ ..+++++|+|+++|+..++
T Consensus 31 ~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~ 107 (388)
T PRK07337 31 DIIHMGIGE--PDFT-APEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLAC 107 (388)
T ss_pred CEEEeCCcC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHH
Confidence 456776663 1222 4788999998887643 2332 234677888888876543 4678999999999999888
Q ss_pred HHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE
Q 011959 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
.. ....++.|++.+++|.+....+ ...|..+..++.....+ +. -|++++++.+.. ++++|++
T Consensus 108 ~~--l~~~gd~Vlv~~p~y~~~~~~~-~~~g~~~~~~~~~~~~~---------~~---~~~~~l~~~~~~---~~~~v~l 169 (388)
T PRK07337 108 LA--LVERGDEVLMPDPSYPCNRHFV-AAAEGRPVLVPSGPAER---------FQ---LTAADVEAAWGE---RTRGVLL 169 (388)
T ss_pred HH--hcCCCCEEEEeCCCchhhHHHH-HHcCCEEEEeecCCccC---------Cc---CCHHHHHhhcCc---cceEEEE
Confidence 84 2345678999899988754333 33333222211110000 00 168888887753 4566666
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEe
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGG 327 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~ 327 (474)
..++|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+... ......++++ +|||.++ +|+|+||+++
T Consensus 170 ~~p~NPtG~~~~~~~-~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~ 246 (388)
T PRK07337 170 ASPSNPTGTSIAPDE-LRRIVEAVRARGGFTIVDEIYQGLSYDAAPV--SALSLGDDVITINSFSKYFNMTGWRLGWLVV 246 (388)
T ss_pred ECCCCCCCcCcCHHH-HHHHHHHHHHCCCEEEEeccccccccCCCCc--ChhhccCCEEEEEechhhcCCchhheeeeec
Confidence 556778898887666 999999999999999999999877 433211 1122334543 7999997 8999999999
Q ss_pred cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc--C-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE-Eeeecee
Q 011959 328 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--E-PGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGM 403 (474)
Q Consensus 328 ~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g~~ 403 (474)
++++++.+.. .......+.+.+++.++.++++.-. . ....+.++++.+++.+.|++ .++... .+..|++
T Consensus 247 ~~~l~~~l~~---~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~----~~~~~~~~p~~g~f 319 (388)
T PRK07337 247 PEALVGTFEK---LAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALES----LGFKVPVMPDGAFY 319 (388)
T ss_pred CHHHHHHHHH---HHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHh----cCCccccCCCeeEE
Confidence 9999888763 2222234567888888777764210 0 12233444445555555544 333222 3456788
Q ss_pred EEEEEecCCCcCcccccccchHHHHHHHHHH-HHCCeEecccC-------CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~-------~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
+|+.+.... .++.....++++.+ .++||.+.|+. .+++|+++..+++++++++++|.+++
T Consensus 320 ~~~~~~~~~--------~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 320 VYADCRGVA--------HPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLF 387 (388)
T ss_pred EEEeccccc--------CCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence 888875310 00111124666664 47899998752 24678888888999999999998875
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=208.84 Aligned_cols=321 Identities=15% Similarity=0.147 Sum_probs=205.3
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar 176 (474)
+..+|||..|. ++++ .++.+.+++.+.......|+.+.. .+|.+.++++++ ..++|++++|+++++..+++.
T Consensus 35 ~~~~i~l~~~~--~~~~-~~~~~~~al~~~~~~~~~Y~~~~g--~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~-- 107 (371)
T PRK05166 35 VPRIAKLGSNE--NPLG-PSPAVRRAFADIAELLRLYPDPQG--RALREAIAARTGVPADRIILGNGSEDLIAVICRA-- 107 (371)
T ss_pred CcceEEcCCCC--CCCC-CCHHHHHHHHHHHHHhhcCCCCcH--HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHH--
Confidence 44689998875 4565 678899998876544333432222 367777777775 567999999999999988874
Q ss_pred hhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
....++.|++.+++|.... ......|..+..++.....++ |++++++.++. ++++|++..++
T Consensus 108 ~~~~gd~vli~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~~--------------~~~~l~~~~~~---~~~~v~l~~p~ 169 (371)
T PRK05166 108 VLRPGDRVVTLYPSFPLHE-DYPTMMGARVERVTVTPDLGF--------------DLDALCAAVAR---APRMLMFSNPS 169 (371)
T ss_pred hcCCCCEEEEcCCChHHHH-HHHHHcCCeEEEeecCCCCCC--------------CHHHHHHhhhc---CCCEEEEeCCC
Confidence 2345677888888887643 233333433322111100111 78999888864 34566666667
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-Ccccccc-CCCCcee---ehhhhcC-CCcceEEEEe-c
Q 011959 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF-GVTPDLT---TLGKIIG-GGLPVGAYGG-R 328 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~-g~~pdi~---t~sK~l~-~G~~iG~~~~-~ 328 (474)
|++|.+.+.++ +++|.++|++ +++||+||+|..| ..+. ......+ ...++++ ||||.++ +|+|+||+++ +
T Consensus 170 NPtG~~~~~~~-~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~ 247 (371)
T PRK05166 170 NPVGSWLTADQ-LARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSD 247 (371)
T ss_pred CCCCCCCCHHH-HHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCC
Confidence 88999887555 7777777764 8899999999877 3221 1111111 1222333 7999999 9999999764 7
Q ss_pred HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEE
Q 011959 329 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (474)
Q Consensus 329 ~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (474)
+++++.+... ...++.|.+++.++.++|..-.. ++.++.++++.+++.+.|++ +++. ..++.|.++++.
T Consensus 248 ~~l~~~~~~~-----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~----~g~~-~~p~~g~fl~~~ 317 (371)
T PRK05166 248 PELVGLLDRV-----RTPFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAE----MGYR-IAPSRANFLFFD 317 (371)
T ss_pred HHHHHHHHHh-----ccCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----CcCe-eCCCcCCEEEEe
Confidence 8888877631 12456788888888877752110 22333444444555555544 3432 245567887776
Q ss_pred EecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
+..+ ..++.+.|+++||.+.|+. .+++|+++. +.++.+++++.|++++
T Consensus 318 ~~~~---------------~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~-~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 318 ARRP---------------ASAVAEALLRQGVIVKPWKQPGFETFIRVSIG-SPEENDHFVAALDKVL 369 (371)
T ss_pred CCCC---------------HHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC-CHHHHHHHHHHHHHHh
Confidence 4211 2568889999999998863 235677766 4666788888887664
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=212.39 Aligned_cols=305 Identities=15% Similarity=0.130 Sum_probs=191.3
Q ss_pred CCHHHHHHHHHHHhhCC-----CCCeEEEeCCHHHHHHHHHHHhHhh-cCCcEEEEEeCCCCCCchhHHHhcCCCCccCC
Q 011959 137 PCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAF-TGRERIIKFEGCYHGHADPFLVKAGSGVATLG 210 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~-----~~~~v~~~~sGseA~~~al~~ar~~-~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~ 210 (474)
..+++.++++++.+.++ ..++|++|+|+++++..++. .+ ..++.|++.+|+|.+....+....|..+..++
T Consensus 88 ~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~---~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~ 164 (468)
T PLN02450 88 LPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMF---CLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIH 164 (468)
T ss_pred hHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHH---HhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEe
Confidence 45778888888876532 46789999999999999988 44 44677888888887754433323343332221
Q ss_pred CCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC---CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 011959 211 LPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287 (474)
Q Consensus 211 ~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DE 287 (474)
.....++ . -|++.+++.+++. +.++++|++..++|++|.+.+.++ +++|.++|++||++||+||
T Consensus 165 ~~~~~~~-----------~-~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~-l~~ll~~a~~~~~~iI~DE 231 (468)
T PLN02450 165 CSSSNGF-----------Q-ITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTE-LNLLVDFITAKNIHLISDE 231 (468)
T ss_pred cCCccCC-----------c-CCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHH-HHHHHHHHHHCCcEEEEEc
Confidence 1101111 0 1678888877641 235676666666778898877665 9999999999999999999
Q ss_pred cccCc-ccCCCcc--cccc------C--CCCce---eehhhhcC-CCcceEEEEecHH-HHHhhcCCCCcccccCCCCCh
Q 011959 288 VMTGF-RLAYGGA--QEYF------G--VTPDL---TTLGKIIG-GGLPVGAYGGRRD-IMEMVAPAGPMYQAGTLSGNP 351 (474)
Q Consensus 288 v~~g~-r~g~~~~--~~~~------g--~~pdi---~t~sK~l~-~G~~iG~~~~~~~-i~~~~~~~~~~~~~~t~~~~~ 351 (474)
+|.++ ..+..+. .+.. + ....+ -+|||.++ +|+|+||++++++ +++.+.. ... ....+.
T Consensus 232 ~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~---~~~--~~~~s~ 306 (468)
T PLN02450 232 IYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATK---MSS--FGLVSS 306 (468)
T ss_pred cccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHH---Hhh--cCCCCH
Confidence 99877 4442221 1111 1 11223 37999998 8999999999754 5665542 111 123577
Q ss_pred HHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHH
Q 011959 352 LAMTAGIHTLKRLKE-----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 426 (474)
Q Consensus 352 ~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 426 (474)
+++.++.+.|+.-.- .+.+++++++.+.+.+.|+ ++++....+..|+++|+.+...- . ......
T Consensus 307 ~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~----~~gi~~~~~~~g~flwi~l~~~~-~------~~~~~~ 375 (468)
T PLN02450 307 QTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLE----AAGIKCLKSNAGLFCWVDMRHLL-K------SNTFEA 375 (468)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH----HcCCcccCCCceEEEEEEchHhc-C------cCCchH
Confidence 888887777742110 1122333333344444443 44543333445668888774210 0 001112
Q ss_pred HHHHHHHHH-HCCeEecccC------CcceEEecC-CcHHHHHHHHHHHHHHHhh
Q 011959 427 FARFYRGML-EEGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 427 ~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~-~t~e~i~~~l~~l~~~~~~ 473 (474)
..++.+.++ ++||.+.|+. .+++|++++ .+++++++++++|++++++
T Consensus 376 ~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~ 430 (468)
T PLN02450 376 EMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLKSFVES 430 (468)
T ss_pred HHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 234566665 5799999873 246889888 4899999999999998864
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-23 Score=205.05 Aligned_cols=319 Identities=15% Similarity=0.117 Sum_probs=198.9
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 177 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~ 177 (474)
..++||..+. ++++ .++.+.+++.+.+.....|+.+ ...+|.+.++++++ +.++|++++|+++++..+++ .
T Consensus 22 ~~~i~l~~~~--n~~~-~~~~~~~a~~~~~~~~~~Y~~~--~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~---~ 93 (360)
T PRK07392 22 DAILDFSASI--NPLG-PPESVIAAIQSALSALRHYPDP--DYRELRLALAQHHQLPPEWILPGNGAAELLTWAGR---E 93 (360)
T ss_pred ccEEEeCCcC--CCCC-CCHHHHHHHHHHHHHhhcCCCc--CHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHH---H
Confidence 3678888664 5555 6789999998877654334322 23466677776665 67899999999999999888 4
Q ss_pred hcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccC
Q 011959 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (474)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (474)
+.+++.|++.+++|.++.. .+...|..+..++.....+.. ....+++.+++.. . ..+++++..++|
T Consensus 94 l~~g~~vlv~~P~y~~~~~-~~~~~g~~~~~v~~~~~~~~~---------~~~~~~~~~~~~~---~-~~~~~~l~nP~N 159 (360)
T PRK07392 94 LAQLRAVYLITPAFGDYRR-ALRAFGATVKELPLPLDQPSP---------GLTLRLQTLPPQL---T-PNDGLLLNNPHN 159 (360)
T ss_pred hCCCCeEEEECCCcHHHHH-HHHHcCCeEEEEecccccCCc---------ccccCHHHHHHhc---c-CCCEEEEeCCCC
Confidence 4456789999999987543 333445433322211111100 0001455544332 2 345666666688
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-ccccCCCCcee---ehhhhcC-CCcceEEEEecHHH
Q 011959 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDI 331 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~i 331 (474)
++|.+.+ .++|.++++++++ +|+||+|.+| ..+.... ....+..+.++ +|||.++ +|+|+||+++++++
T Consensus 160 PTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~ 234 (360)
T PRK07392 160 PTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDR 234 (360)
T ss_pred CCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHH
Confidence 8999998 5678888999985 6669999988 5442111 11122223333 7999999 99999999999999
Q ss_pred HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEE
Q 011959 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE----YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (474)
Q Consensus 332 ~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~----~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (474)
++.+... . ..++.+.+++.++.++|+. ..+.+ .++++.+++.+.|+ +++.....++.|.++++.
T Consensus 235 ~~~~~~~---~--~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~r~~l~~~L~----~~~~~~~~~~~~~fl~~~ 302 (360)
T PRK07392 235 LQRWQQW---R--DPWPVNGLAAAAAIAALAD---RDFQQQTWAWLPPAREALFQGLA----SLPGLTPLPSAANFLLVQ 302 (360)
T ss_pred HHHHHhh---C--CCCCCCHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHH----hCCCcEECCCCCCEEEEE
Confidence 8887631 1 2467788999998888752 23333 34444444444443 332222234567777766
Q ss_pred EecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 408 FTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
+.. ...++.+.++ ++||.+.|+. .+++|+++... ++.+++.+.|+++++
T Consensus 303 ~~~---------------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~-~~~~~l~~al~~~~~ 358 (360)
T PRK07392 303 SQG---------------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTE-AENQRLLEALAAILA 358 (360)
T ss_pred cCC---------------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCH-HHHHHHHHHHHHHhh
Confidence 531 1246777654 6799998873 13567776653 444566666665543
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-24 Score=213.07 Aligned_cols=334 Identities=13% Similarity=0.102 Sum_probs=205.5
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHH----Hhc--CCCC---CCCHHHHHHHHHHHhhCC---CCCeEE--EeCCH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETM----KKG--TSFG---APCLLENVLAEMVISAVP---SIEMVR--FVNSG 164 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~----~~~--~~~~---~~~~~~~~la~~l~~~~~---~~~~v~--~~~sG 164 (474)
...+|+..|.....- .++.+.+++.+++ ... ..|+ +..++++++++++.+... ..++|+ .+++|
T Consensus 29 ~~~i~l~~g~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~ 106 (404)
T PTZ00376 29 PSKVNLGIGAYRDEN--GKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSG 106 (404)
T ss_pred cccEecccceeECCC--CCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCc
Confidence 456788777321111 2223344444443 211 2232 235677777777755432 456888 48899
Q ss_pred HHHHHHHHHHhHhhc-CCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-C-CCCCCCCCCCCceEEccCCCHHHHHHHHh
Q 011959 165 TEACMGVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-P-DSPGVPKGATYETLTAPFNDVSALENLFE 241 (474)
Q Consensus 165 seA~~~al~~ar~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~d~~~le~~l~ 241 (474)
++|+..++.+.+.+. .++.|++.+++|+++.. .+...|..+..++. + ...++ |++.+++.++
T Consensus 107 ~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~-~~~~~G~~~~~v~l~~~~~~~~--------------d~~~l~~~~~ 171 (404)
T PTZ00376 107 TGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVN-IFKSAGLNVKEYRYYDPKTKGL--------------DFDGMLEDLR 171 (404)
T ss_pred chHHHHHHHHHHHhcCCCCEEEEcCCCchhHHH-HHHHcCCceeeccccCcccCCc--------------CHHHHHHHHH
Confidence 999999887654554 56789999999988644 44455554433222 0 01111 7899999887
Q ss_pred cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC---Cccccc-cCCCCce---eehh
Q 011959 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEY-FGVTPDL---TTLG 313 (474)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~~~~~-~g~~pdi---~t~s 313 (474)
+..++.+++++..++|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+. ...... ....+++ .+||
T Consensus 172 ~~~~~~~~~~~~~p~NPTG~~~s~~~-~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfS 250 (404)
T PTZ00376 172 TAPNGSVVLLHACAHNPTGVDPTEEQ-WKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFS 250 (404)
T ss_pred hCCCCCEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCC
Confidence 54334567777778888999887666 999999999999999999999888 4321 101111 1111233 3799
Q ss_pred hhcC-CCcceEEE---EecHHHHHhhcCC-CCcccccCC-CCChHHHHHHHHHHHHhc---C-----CCHHHHHHHHHHH
Q 011959 314 KIIG-GGLPVGAY---GGRRDIMEMVAPA-GPMYQAGTL-SGNPLAMTAGIHTLKRLK---E-----PGTYEYLNKITGE 379 (474)
Q Consensus 314 K~l~-~G~~iG~~---~~~~~i~~~~~~~-~~~~~~~t~-~~~~~~~aaa~aal~~~~---~-----~~~~~~~~~~~~~ 379 (474)
|.++ +|||+||+ ++++++++.+... ... ...++ +.+++++.++.++|+.-. + .+.+++++++++.
T Consensus 251 K~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~ 329 (404)
T PTZ00376 251 KNMGLYGERIGALHIVCANKEEAANVLSQLKLI-IRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQL 329 (404)
T ss_pred CcccccccccceEEEEeCCHHHHHHHHHHHHHH-HhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 89999998 5788765544210 011 11233 346678888887774211 0 1223445566666
Q ss_pred HHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccCCcceEEecC-CcH
Q 011959 380 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQFEAGFTSLA-HSS 457 (474)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~~~~~~-~t~ 457 (474)
+.+.|++.....++....+..|.++|+.+. .++++.|+++ ||++.|++ |++++ .+.
T Consensus 330 l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~------------------~~~~~~L~~~~~v~v~p~~----Ris~~~~~~ 387 (404)
T PTZ00376 330 LYDELKALGSPGDWEHIINQIGMFSFTGLT------------------KEQVERLIEKYHIYLLDNG----RISVAGLTS 387 (404)
T ss_pred HHHHHHhcCCCCcccccccCceEEEecCCC------------------HHHHHHHHHhCCEeecCCC----eEEEeccCH
Confidence 666665542110111112334555555441 3577778866 99999874 78775 899
Q ss_pred HHHHHHHHHHHHHHhh
Q 011959 458 DDIQHTITAAEKVLRQ 473 (474)
Q Consensus 458 e~i~~~l~~l~~~~~~ 473 (474)
++++.++++|++++.-
T Consensus 388 ~~~~~~~~~l~~~~~~ 403 (404)
T PTZ00376 388 KNVDYVAEAIHDVVRN 403 (404)
T ss_pred HhHHHHHHHHHHHHhc
Confidence 9999999999998753
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=209.47 Aligned_cols=340 Identities=13% Similarity=0.075 Sum_probs=210.1
Q ss_pred CCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhC--C-CCCeEEEeCCHHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAV--P-SIEMVRFVNSGTEACM 169 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~---~~~~~~~la~~l~~~~--~-~~~~v~~~~sGseA~~ 169 (474)
.|+.++||..|.. +++++ .++++.+++.+.+.....|+. ..++++.+++++.... + ..++|++++|+++++.
T Consensus 31 ~~~~~i~l~~g~p-~~~~~~~~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~ 109 (404)
T PRK09265 31 EGHKILKLNIGNP-APFGFEAPDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIV 109 (404)
T ss_pred cCCCeEEecCCCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHH
Confidence 4557788877632 33454 578899988887654333432 2345666666664332 2 4678999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (474)
.+++. ...+++.|++.+++|..+...+ ...|..+.........++ .-|++++++.+.. ++++
T Consensus 110 ~~~~~--~~~~gd~Vlv~~p~y~~~~~~~-~~~g~~~v~~~~~~~~~~------------~~d~~~l~~~~~~---~~~~ 171 (404)
T PRK09265 110 MAMQA--LLNNGDEVLVPAPDYPLWTAAV-SLSGGKPVHYLCDEEAGW------------FPDLDDIRSKITP---RTKA 171 (404)
T ss_pred HHHHH--hCCCCCEEEEeCCCCcChHHHH-HHcCCEEEEEecccccCC------------CCCHHHHHHhccc---cceE
Confidence 99884 2345678999888887654433 333332221111000010 0178889888753 4566
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCc--e---eehhhhcC-CCcce
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD--L---TTLGKIIG-GGLPV 322 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pd--i---~t~sK~l~-~G~~i 322 (474)
|++..++|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+.... ......++ + -+|||.++ +|+|+
T Consensus 172 v~l~~P~NPtG~~~~~~~-~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~vi~~~S~SK~~~~pGlRi 249 (404)
T PRK09265 172 IVIINPNNPTGAVYSKEL-LEEIVEIARQHNLIIFADEIYDKILYDGAVHI-SIASLAPDLLCVTFNGLSKAYRVAGFRV 249 (404)
T ss_pred EEEECCCCCCCcCCCHHH-HHHHHHHHHHCCCEEEEehhhhhccCCCCCcC-CHHHcCCCceEEEEecchhhccCcccce
Confidence 665555778998887666 999999999999999999999887 4432111 11111222 2 26999996 79999
Q ss_pred EEEEe--cHH----HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHH---HHHHHHHHHHHHHHHHHhhhc-
Q 011959 323 GAYGG--RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTY---EYLNKITGELTQGIIDAGKKA- 391 (474)
Q Consensus 323 G~~~~--~~~----i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~---~~~~~~~~~l~~~L~~~~~~~- 391 (474)
||+++ +++ +++.+.. ....+++.|.+++.++.++|+..+. +.+. +++.++.+.+.+.|++ +
T Consensus 250 G~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~----~~ 321 (404)
T PRK09265 250 GWMVLSGPKKHAKGYIEGLDM----LASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNA----IP 321 (404)
T ss_pred EEEEEeCchHHHHHHHHHHHH----HhccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 99985 444 3333321 1123456788888888888742111 1121 2334444444444443 3
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------CcceEEecCCcHHHHHHHHH
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTIT 465 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~ 465 (474)
++....+..|+++|+.+..... +.....+.+.+.+.++||.+.|+. ..++|+++..++++++++++
T Consensus 322 ~~~~~~p~~g~~l~~~~~~~~~--------~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~~~e~l~~~l~ 393 (404)
T PRK09265 322 GVSCVKPKGALYAFPKLDPKVY--------PIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIG 393 (404)
T ss_pred CCcccCCCcceEEEEEeccccc--------CCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCCCHHHHHHHHH
Confidence 2222334457777777743110 000112356678889999998863 23578888889999999999
Q ss_pred HHHHHHhh
Q 011959 466 AAEKVLRQ 473 (474)
Q Consensus 466 ~l~~~~~~ 473 (474)
+|.++++.
T Consensus 394 rl~~~l~~ 401 (404)
T PRK09265 394 RIGRFLSG 401 (404)
T ss_pred HHHHHHHH
Confidence 99998864
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=209.15 Aligned_cols=342 Identities=13% Similarity=0.067 Sum_probs=213.0
Q ss_pred CCCEEEeccCChhhc-cCCCCCHHHHHHHHHHHHhcC--CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHH
Q 011959 97 DGNEYIDYVGSWGPA-IIGHADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 167 (474)
Q Consensus 97 dG~~~iD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~--~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA 167 (474)
.|..++|+..|.... +.-..++.+++++.+.+.... .|+ +..+++..+++.+....+ ..+++++++|+++|
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~a 108 (403)
T TIGR01265 29 PEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQA 108 (403)
T ss_pred cCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHH
Confidence 466788888874321 112257899999998886532 232 123455666666654322 35789999999999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
+..+++.. ...++.|++.+++|..+.. .....|..+...+.....+. . -|++.+++.+.. ++
T Consensus 109 l~~~~~~l--~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~~---------~---~d~~~l~~~~~~---~~ 170 (403)
T TIGR01265 109 IEICIEAL--ANPGANILVPRPGFPLYDT-RAAFSGLEVRLYDLLPEKDW---------E---IDLDGLEALADE---KT 170 (403)
T ss_pred HHHHHHHh--CCCCCEEEEeCCCchhHHH-HHHHcCCEEEEecCCcccCC---------c---cCHHHHHHHhCc---Cc
Confidence 99999952 2456778888888765433 23333433322111100010 0 178999888753 45
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cccccCCCCcee---ehhhhcC-CCcc
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDLT---TLGKIIG-GGLP 321 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pdi~---t~sK~l~-~G~~ 321 (474)
+++++..++|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+..+ ....+.-.++++ +|||.++ +|+|
T Consensus 171 ~~v~i~~p~NPtG~~~~~~~-~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlR 249 (403)
T TIGR01265 171 VAIVVINPSNPCGSVFSRDH-LQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWR 249 (403)
T ss_pred cEEEEecCCCCCCCCCCHHH-HHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcce
Confidence 66666666778898877666 999999999999999999999988 544221 111111112233 7999976 7999
Q ss_pred eEEEEec--HH-----HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 322 VGAYGGR--RD-----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 322 iG~~~~~--~~-----i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
+||++++ ++ +++.+.. . ...+++.+.+++.++.++|+...+ ...++.++++.+.+.+.|++ +
T Consensus 250 iG~~v~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~ 321 (403)
T TIGR01265 250 LGWIIIHDPHGIFRDTVLQGLKN---L-LQRILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKD----I 321 (403)
T ss_pred EEEEEEeCchhhhHHHHHHHHHH---H-hhhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 9999873 22 3333321 1 112456688888888888863111 22334444444555555443 3
Q ss_pred -CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH-HHCCeEecccC----CcceEEecCCcHHHHHHHHH
Q 011959 392 -GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTIT 465 (474)
Q Consensus 392 -~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~ 465 (474)
++....+..|+++|+.+...... +.....++.+.+ .++||.+.|+. .+++|+++...++.++++++
T Consensus 322 ~~~~~~~p~~g~f~~~~~~~~~~~--------~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~~~~~l~~~l~ 393 (403)
T TIGR01265 322 PGLVCPKPEGAMYLMVKLELELFP--------EIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITVPESMLEEACS 393 (403)
T ss_pred CCceecCCCceeEEEEeccccccC--------CCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecCCHHHHHHHHH
Confidence 22222355688888887532100 000124566665 47899999874 24678888888999999999
Q ss_pred HHHHHHhh
Q 011959 466 AAEKVLRQ 473 (474)
Q Consensus 466 ~l~~~~~~ 473 (474)
+|.+++++
T Consensus 394 ~l~~~~~~ 401 (403)
T TIGR01265 394 RIKEFCER 401 (403)
T ss_pred HHHHHHHh
Confidence 99998865
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=207.71 Aligned_cols=320 Identities=16% Similarity=0.205 Sum_probs=204.0
Q ss_pred EEEeccCChhhccCC-CCCHHHHHHHHHHHH---h-cCCCCC-CCHHHHHHHHHHHhhCC-------CCC-eEEEeCCHH
Q 011959 100 EYIDYVGSWGPAIIG-HADDQVLAALGETMK---K-GTSFGA-PCLLENVLAEMVISAVP-------SIE-MVRFVNSGT 165 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~---~-~~~~~~-~~~~~~~la~~l~~~~~-------~~~-~v~~~~sGs 165 (474)
++|||.+| ++.+ .++|.+.+++.+..+ . ...++| +.....+|.+.+++++. +.+ .+++++|..
T Consensus 2 ~~I~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~ 78 (363)
T PF00155_consen 2 DVINLGSN---APLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQ 78 (363)
T ss_dssp TEEESSSS---STSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHH
T ss_pred CEEEEECC---CCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccc
Confidence 57888888 4444 356666666555443 1 222222 23334444444444442 356 677777656
Q ss_pred HHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEcc-------CCCHHHHHH
Q 011959 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP-------FNDVSALEN 238 (474)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~d~~~le~ 238 (474)
+++..++.+.+ ..+++.|++.+++|.+. ...+...|.. ++.++ +.|+++|++
T Consensus 79 ~~~~~~~~~~~-~~~~~~vlv~~P~y~~~-~~~~~~~g~~-------------------~~~~~~~~~~~~~~d~~~l~~ 137 (363)
T PF00155_consen 79 AALFLLLRLLK-INPGDTVLVPDPCYPSY-IEAARLLGAE-------------------VIPVPLDSENDFHLDPEALEE 137 (363)
T ss_dssp HHHHHHHHHHH-SSTTSEEEEEESSSTHH-HHHHHHTTSE-------------------EEEEEEEETTTTEETHHHHHH
T ss_pred cchhhhhhccc-ccccccceecCCccccc-cccccccCce-------------------eeecccccccccccccccccc
Confidence 66655555321 34667888888888774 3333344432 33333 348999999
Q ss_pred HHhcCC-C--CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC-CCc-c-ccccCCCCcee--
Q 011959 239 LFENNK-G--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGG-A-QEYFGVTPDLT-- 310 (474)
Q Consensus 239 ~l~~~~-~--~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g-~~~-~-~~~~g~~pdi~-- 310 (474)
.+++.+ + ++.+|+++.++|++|...+.++ +++|.++|++||++||+||+|.++..+ ..+ . .....-.++++
T Consensus 138 ~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~-l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~ 216 (363)
T PF00155_consen 138 ALDELPSKGPRPKAVLICNPNNPTGSVLSLEE-LRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVV 216 (363)
T ss_dssp HHHTSHTTTETEEEEEEESSBTTTTBB--HHH-HHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEE
T ss_pred ccccccccccccceeeeccccccccccccccc-ccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceee
Confidence 998642 2 3567777777888999887666 999999999999999999999888333 211 1 22223334433
Q ss_pred -ehhhhcC-CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHH
Q 011959 311 -TLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-----PGTYEYLNKITGELTQG 383 (474)
Q Consensus 311 -t~sK~l~-~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~ 383 (474)
+|||.+| .|+|+||+++++++++.++. ... .+..+.+.+.++.+.+..... +...++++++.+++.+.
T Consensus 217 ~S~SK~~g~~GlRvG~i~~~~~~~~~l~~---~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~ 291 (363)
T PF00155_consen 217 GSLSKSFGLPGLRVGYIVAPPELIERLRR---FQR--SGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREA 291 (363)
T ss_dssp EESTTTTTSGGGTEEEEEEEHHHHHHHHH---HHH--HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccccccccccccccchhhhhhhhhh---ccc--cccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHH
Confidence 7999999 79999999999999998873 222 233377777777777654331 33445555555555555
Q ss_pred HHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccCC----cceEEec-CCcH
Q 011959 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQF----EAGFTSL-AHSS 457 (474)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~----~~~~~~~-~~t~ 457 (474)
|++. ++.......|.++++.+.. ....++.+.|+++ ||.+.|+.. ..+|+++ .+++
T Consensus 292 L~~~----~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~a~~~~ 353 (363)
T PF00155_consen 292 LEEI----GITVLPPEAGFFLWVRLDP--------------NDAEELAQELLEEYGILVRPGSYFGVPGYIRISLASHSE 353 (363)
T ss_dssp HHHT----TSEEEHHSBSSEEEEEESH--------------HHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEGGCSCH
T ss_pred HHHh----hhheeeccCccEEEEEccc--------------chHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEeccCCH
Confidence 5443 5444434456666655532 1346788889988 999998642 3678888 8999
Q ss_pred HHHHHHHHHH
Q 011959 458 DDIQHTITAA 467 (474)
Q Consensus 458 e~i~~~l~~l 467 (474)
+++++++++|
T Consensus 354 e~~~~~~~~l 363 (363)
T PF00155_consen 354 EDLEEALERL 363 (363)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhC
Confidence 9999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=210.69 Aligned_cols=334 Identities=14% Similarity=0.153 Sum_probs=206.5
Q ss_pred EEEeccCChhhccCCCCC--HHHHHHHHHHHHhc------CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHH
Q 011959 100 EYIDYVGSWGPAIIGHAD--DQVLAALGETMKKG------TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGT 165 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~------~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGs 165 (474)
..|||..| ++.-... +.+.+++.+.+... ..|+ +..++++.+++++.+.++ .+++|++|+|++
T Consensus 31 ~~i~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~ 107 (416)
T PRK09440 31 GAIMLGGG---NPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQ 107 (416)
T ss_pred CceeccCC---CCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChH
Confidence 35787776 3321222 35667776665431 1233 234778888888876543 568999999999
Q ss_pred HHHHHHHHHhHhhc------CCcEEEE-EeCCCCCCchhHHHhc---CCCCccCCCCCCCCCCCCCCCceEEccC-CCHH
Q 011959 166 EACMGVLRLARAFT------GRERIIK-FEGCYHGHADPFLVKA---GSGVATLGLPDSPGVPKGATYETLTAPF-NDVS 234 (474)
Q Consensus 166 eA~~~al~~ar~~~------~~~~ii~-~~~~yhg~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~ 234 (474)
+|+..++++ +. .++.|++ .+++|+++...+.... +.+....+.+. + .+.+ -|++
T Consensus 108 ~al~~~~~~---l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~d~~ 172 (416)
T PRK09440 108 SAFFYLFNL---FAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPE----------G--QFKYHVDFE 172 (416)
T ss_pred HHHHHHHHH---HhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccc----------c--ccccCCCHH
Confidence 999999884 33 2467888 6999988654322111 00000000000 0 0011 1677
Q ss_pred HHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCc-cccccCCCCce---e
Q 011959 235 ALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG-AQEYFGVTPDL---T 310 (474)
Q Consensus 235 ~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~-~~~~~g~~pdi---~ 310 (474)
.|+ +. .+++++++.+++|++|.+.+.++ +++|.++|++|+++||+||+|..+.....+ .... ...+.+ .
T Consensus 173 ~l~--~~---~~~~~i~l~~P~NPTG~~~s~~~-~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~-~~~~~vI~~~ 245 (416)
T PRK09440 173 HLH--ID---EDTGAICVSRPTNPTGNVLTDEE-LEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATP-LWNPNIILCM 245 (416)
T ss_pred Hcc--cC---CCceEEEEecCCCCCCccCCHHH-HHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCc-cccCCeEEEe
Confidence 776 22 25667777666788999987666 999999999999999999999643211111 0000 112233 3
Q ss_pred ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHH
Q 011959 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP-----GTYEYLNKITGELTQGII 385 (474)
Q Consensus 311 t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~-----~~~~~~~~~~~~l~~~L~ 385 (474)
+|||...+|+|+||+++++++++.+.. .......+.+.+++.++.++|+.-.-. .+...++++.+.+++.|.
T Consensus 246 SfSK~~~pGlRiG~~i~~~~l~~~~~~---~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~ 322 (416)
T PRK09440 246 SLSKLGLPGVRCGIVIADEEIIEALSN---MNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLR 322 (416)
T ss_pred cccccCCCcceEEEEeCCHHHHHHHHH---HHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799974489999999999999988863 222223466888998888887521100 122333444455555555
Q ss_pred HHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-------------cceEEe
Q 011959 386 DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------------EAGFTS 452 (474)
Q Consensus 386 ~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------~~~~~~ 452 (474)
+.+...++....+..|.++|+.+..... ...++.+.|.++||.+.|+.. +++|++
T Consensus 323 ~~l~~~~~~~~~p~gg~fiw~~~~~~~~------------~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis 390 (416)
T PRK09440 323 RYLPDEPCLIHKPEGAIFLWLWFKDLPI------------TTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMN 390 (416)
T ss_pred HhcccCCeEEecCCCceEEEEECCCCCC------------CHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEE
Confidence 5433222222233457888887743110 124677788899999988521 257888
Q ss_pred cCCcHHHHHHHHHHHHHHHhh
Q 011959 453 LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+..+++++++++++|.+++++
T Consensus 391 ~~~~~~~l~~~i~~l~~~~~~ 411 (416)
T PRK09440 391 YVQDDEEIEKGIAILAEEVEK 411 (416)
T ss_pred ecCCHHHHHHHHHHHHHHHHH
Confidence 877999999999999998864
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=205.39 Aligned_cols=309 Identities=15% Similarity=0.137 Sum_probs=197.9
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHh
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~a 175 (474)
.|..++||..|. ++++ .+|.+.+++.+.+.......|+.....+|.+.+++++. +.++|++++|+++++..+++
T Consensus 16 ~~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~-- 90 (337)
T PRK03967 16 EGNYRIWLDKNE--NPFD-LPEELKEEIFEELKRVPFNRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVK-- 90 (337)
T ss_pred CCCceEEecCCC--CCCC-CCHHHHHHHHHHhhcCccccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHH--
Confidence 345678888774 4554 57889999998875422223344445667777777765 67899999999999988777
Q ss_pred HhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
.+ .++.|++.+++|..+. ......|..+..++.....+ -|++.+++.+. +++++++..+
T Consensus 91 -~~-~gd~V~v~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~~~----~~~~v~~~~P 149 (337)
T PRK03967 91 -LF-EGKHIVITPPTFGMYS-FYAKLNGIPVIDVPLKEDFT--------------IDGERIAEKAK----NASAVFICSP 149 (337)
T ss_pred -Hh-CCCeEEEeCCChHHHH-HHHHHcCCeEEEeecCCCCC--------------cCHHHHHHhcc----CCCEEEEeCC
Confidence 34 4678999999986532 23334444332221110001 16788877643 3445555555
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEecHHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDI 331 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~i 331 (474)
+|++|.+.+ .++|.++++ +++++|+||+|.+|..... .......++++ +|||.++ +|+|+||+++++++
T Consensus 150 ~NPtG~~~~----~~~l~~i~~-~~~~ii~De~y~~~~~~~~--~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~ 222 (337)
T PRK03967 150 NNPTGNLQP----EEEILKVLE-TGKPVVLDEAYAEFSGKSL--IGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEI 222 (337)
T ss_pred CCCCCCCCC----HHHHHHHHh-cCCEEEEECchhhhcccch--HHHHhhCCCEEEEecchHhhcchhhhheeeecCHHH
Confidence 788999988 566777774 7999999999988721111 11112223443 7999999 89999999999999
Q ss_pred HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEec
Q 011959 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410 (474)
Q Consensus 332 ~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~ 410 (474)
++.+.... ..++.+.+++.++.++|+..+. .+.++.+.+.++.+.+.|.+ +. .++.|.++++.+
T Consensus 223 i~~~~~~~-----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~----~~----~~~~~~~~~~~~-- 287 (337)
T PRK03967 223 IDALYRIK-----PPFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGE----YA----YPSDANFLLLKL-- 287 (337)
T ss_pred HHHHHhhc-----CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcc----Cc----CCCCCcEEEEhH--
Confidence 98887421 2456688898888888753211 12222333333334433332 21 235566666543
Q ss_pred CCCcCcccccccchHHHHHHHHHHHHCCeEecccC---CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
.+.+.|+++||.+.+.. .+++|+++. +.++.+++++.|+++..
T Consensus 288 ------------------~~~~~l~~~gi~v~~~~~~~~~~~Ri~~~-~~~~~~~l~~~l~~~~~ 333 (337)
T PRK03967 288 ------------------DAYDYLLENGIVVRKLSGRLEGHIRVTVG-KREENDEFIKALKEIKE 333 (337)
T ss_pred ------------------HHHHHHHHCCEEEEeCCCCCCCeEEEecC-CHHHHHHHHHHHHHHHH
Confidence 25688889999997642 235777755 56788888888887764
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-23 Score=209.29 Aligned_cols=307 Identities=13% Similarity=0.078 Sum_probs=192.3
Q ss_pred CCHHHHHHHHHHHhhCC-----CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC
Q 011959 137 PCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL 211 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~-----~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~ 211 (474)
..+++.++++++.+.++ ++++|++|+|+++|++.+++. ....++.|++.+|+|.+.........|..+..++.
T Consensus 96 ~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~--l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~ 173 (496)
T PLN02376 96 LKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFC--LADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPC 173 (496)
T ss_pred cHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHH--hCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeC
Confidence 46788889998887542 568999999999999999983 23445778888888888544332234544333222
Q ss_pred CCCCCCCCCCCCceEEccCCCHHHHHHHHhc---CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011959 212 PDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (474)
Q Consensus 212 ~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (474)
....+. . -|++++++.+++ ...++++|++..++|++|.+.+.++ +++|.++|++||++||+||+
T Consensus 174 ~~~~~~---------~---~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~-l~~L~~~a~~~~i~lI~DEi 240 (496)
T PLN02376 174 SSSDNF---------K---LTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDT-LTNLVRFVTRKNIHLVVDEI 240 (496)
T ss_pred CCCccC---------c---CCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHH-HHHHHHHHHHcCCEEEEEcC
Confidence 100110 0 067888765432 1236777777777788999887666 99999999999999999999
Q ss_pred ccCc-ccCCCcc--ccc---cC---CCCc----eeehhhhcC-CCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHH
Q 011959 289 MTGF-RLAYGGA--QEY---FG---VTPD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLA 353 (474)
Q Consensus 289 ~~g~-r~g~~~~--~~~---~g---~~pd----i~t~sK~l~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~ 353 (474)
|..+ ..+..+. .+. ++ ..++ +.+|||.|+ +|+|+||+++ ++.+.+.+.. .. .....+.++
T Consensus 241 Y~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~---~~--~~~~vs~~~ 315 (496)
T PLN02376 241 YAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARK---MS--SFGLVSSQT 315 (496)
T ss_pred ccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHH---Hh--hcCCCCHHH
Confidence 9887 4442221 111 11 1233 237999998 8999999998 4566665542 11 112356777
Q ss_pred HHHHHHHHHHhcCCCHH-HHH---HHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHH
Q 011959 354 MTAGIHTLKRLKEPGTY-EYL---NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 429 (474)
Q Consensus 354 ~aaa~aal~~~~~~~~~-~~~---~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 429 (474)
+.++.+.|+ +.++. +.+ ++..+..++.+.+.+.+.++....+..|+++|+.+...-.. ....+...+
T Consensus 316 Q~a~~~~L~---d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~------~~~~~~e~~ 386 (496)
T PLN02376 316 QLMLASMLS---DDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRD------RNSFESEIE 386 (496)
T ss_pred HHHHHHHhC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCceEEEEEEchhhhcc------CCchhHHHH
Confidence 777776664 33332 222 22222222333333333444333345678888887431000 001112246
Q ss_pred HHHHHHH-CCeEecccC------CcceEEecC-CcHHHHHHHHHHHHHHHh
Q 011959 430 FYRGMLE-EGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 430 ~~~~l~~-~Gv~v~~~~------~~~~~~~~~-~t~e~i~~~l~~l~~~~~ 472 (474)
+++.+++ .||.+.|+. .+++|+++. .+++++++++++|.+++.
T Consensus 387 l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~ 437 (496)
T PLN02376 387 LWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQDFVS 437 (496)
T ss_pred HHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHH
Confidence 7777776 599999873 236788887 588999999999999875
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=202.19 Aligned_cols=329 Identities=14% Similarity=0.111 Sum_probs=212.9
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhc----CCC---CCCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSF---GAPCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~---~~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~ 168 (474)
...+||..+ ++-...++.+.+++.+.+... ..| .+..+++..+++++...+. .++++++++|+++++
T Consensus 33 ~~~~~l~~g---~p~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al 109 (394)
T PRK06836 33 DNVFDFSLG---NPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGAL 109 (394)
T ss_pred CCeEEecCc---CCCCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHH
Confidence 356788776 332235788999888776542 112 1234666777777766542 468899999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCC-CCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~-~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
..+++.. ...++.|++.+++|.++.. .+...|..+..++.... .++ |++++++.++. ++
T Consensus 110 ~~~~~~l--~~~gd~Vli~~p~~~~~~~-~~~~~g~~v~~v~~~~~~~~~--------------d~~~l~~~~~~---~~ 169 (394)
T PRK06836 110 NVALKAI--LNPGDEVIVFAPYFVEYRF-YVDNHGGKLVVVPTDTDTFQP--------------DLDALEAAITP---KT 169 (394)
T ss_pred HHHHHHh--cCCCCEEEEcCCCCccHHH-HHHHcCCEEEEEecCCccCcC--------------CHHHHHhhcCc---Cc
Confidence 9998842 3455778888888877543 33334443332221110 011 78999998863 56
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHH------hCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcC
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKE------NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG 317 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~------~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~ 317 (474)
++|++..++|++|.+.+.++ +++|.++|++ ||+++|+||+|.+| ..+.... ......++++ +|||.++
T Consensus 170 ~~v~~~~p~NPtG~~~~~~~-~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~i~~~S~SK~~~ 247 (394)
T PRK06836 170 KAVIINSPNNPTGVVYSEET-LKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP-YIFKYYDNSIVVYSFSKSLS 247 (394)
T ss_pred eEEEEeCCCCCCCcCCCHHH-HHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCC-ChHHccCcEEEEecchhhcc
Confidence 77777777888999888777 9999999999 89999999999888 4332111 1111122333 7999999
Q ss_pred -CCcceEEEEecHHHHHh---hcCCCCcc-cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 318 -GGLPVGAYGGRRDIMEM---VAPAGPMY-QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 318 -~G~~iG~~~~~~~i~~~---~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
+|+|+||+++++++.+. +....... ..+..+.+++.+.++...++ +....+.++++.+.+.+.|++ ++
T Consensus 248 ~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~r~~l~~~L~~----~g 320 (394)
T PRK06836 248 LPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLD---ATVDVSIYKRNRDLLYDGLTE----LG 320 (394)
T ss_pred CcceeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHh----CC
Confidence 89999999998876432 11000000 11123556777777665553 222344556666666666654 34
Q ss_pred CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHH
Q 011959 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAE 468 (474)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~ 468 (474)
+....+..|.++++.+... ...++++.|.++||.+.|+. .+++|+++..+++++++++++|+
T Consensus 321 ~~~~~~~gg~~~~~~~~~~--------------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~~~~~~~~~~i~~l~ 386 (394)
T PRK06836 321 FECVKPQGAFYLFPKSPEE--------------DDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYCVDTETIERSLPAFE 386 (394)
T ss_pred CEeecCCceEEEEEeCCCC--------------CHHHHHHHHHhCCEEEECchhcCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 3322333456666654221 12466788889999999873 24678888889999999999999
Q ss_pred HHHhh
Q 011959 469 KVLRQ 473 (474)
Q Consensus 469 ~~~~~ 473 (474)
+++++
T Consensus 387 ~~l~~ 391 (394)
T PRK06836 387 KLAKE 391 (394)
T ss_pred HHHHH
Confidence 99875
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=197.40 Aligned_cols=298 Identities=16% Similarity=0.094 Sum_probs=191.8
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar 176 (474)
+...+|||..|. ++++ +|.+.+++.+.+.....| +. ...|.++++++++ ++|++|+|+++|+..++.
T Consensus 6 ~~~~~i~l~~~~--np~~--p~~~~~a~~~~~~~~~~y--p~--~~~l~~~ia~~~~--~~I~vt~G~~~al~~~~~--- 72 (311)
T PRK08354 6 REEGLIDFSASV--NPYP--PEWLDEMFERAKEISGRY--TY--YEWLEEEFSKLFG--EPIVITAGITEALYLIGI--- 72 (311)
T ss_pred CccceeEecCCC--CCCC--CHHHHHHHHHHHHHhhcC--CC--hHHHHHHHHHHHC--CCEEECCCHHHHHHHHHH---
Confidence 445689998874 5654 688999998876543323 32 3557777777764 579999999999988775
Q ss_pred hhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
.+.+++.|++.+++|.++...+ ...|..+ ..++ .|++.+++.+++ ....++++| +
T Consensus 73 ~~~~gd~vlv~~P~y~~~~~~~-~~~g~~~-------------------~~~~-~d~~~l~~~~~~---~~~vi~~~P-~ 127 (311)
T PRK08354 73 LALRDRKVIIPRHTYGEYERVA-RFFAARI-------------------IKGP-NDPEKLEELVER---NSVVFFCNP-N 127 (311)
T ss_pred hhCCCCeEEEeCCCcHHHHHHH-HHcCCEE-------------------eecC-CCHHHHHHhhcC---CCEEEEecC-C
Confidence 3346788999999998754433 3333322 1112 278888887762 234555566 6
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcC-CCcceEEEEecHHHHHh
Q 011959 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEM 334 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i~~~ 334 (474)
|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+.. .. .....-+-+|||+++ +|+|+||+++ +.+.
T Consensus 128 NPTG~~~~~~~-l~~l~~~a~~~~~~li~De~y~~f~~~~~~--~~-~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~~ 200 (311)
T PRK08354 128 NPDGKFYNFKE-LKPLLDAVEDRNALLILDEAFIDFVKKPES--PE-GENIIKLRTFTKSYGLPGIRVGYVKG---FEEA 200 (311)
T ss_pred CCCCCccCHHH-HHHHHHHhhhcCcEEEEeCcchhccccccc--cC-CCcEEEEeccHhhcCCccceeeeeee---hHHH
Confidence 78898887666 999999999999999999999988 43321 11 111111237999999 9999999988 4444
Q ss_pred hcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCc
Q 011959 335 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY 414 (474)
Q Consensus 335 ~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~ 414 (474)
++... ..+..+.++++++.+.++ + ..++++++.+.+++..+.+..... .++.|.++.+.+.+
T Consensus 201 l~~~~-----~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~---- 262 (311)
T PRK08354 201 FRSVR-----MPWSIGSTGYAFLEFLIE----D-DFEHLRKTMPLIWREKERFEKALY----VKSDANFFIKDVGD---- 262 (311)
T ss_pred HHHcC-----CCccCCHHHHHHHHHHHH----h-HHHHHHHHHHHHHHHHHHHHHhcC----CCCCCcEEEEECCC----
Confidence 44211 134455555555554443 2 234555555555555544322111 24567776654321
Q ss_pred CcccccccchHHHHHHHHHHHHCCeEecccCC----cceEEecCCcHHHHHHHHHHHHHH
Q 011959 415 NFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~~~~~~~t~e~i~~~l~~l~~~ 470 (474)
..++++.|.++||.+.++.. +++|+++. +.++.+++++.|+++
T Consensus 263 ------------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~-~~~~~~~l~~al~~~ 309 (311)
T PRK08354 263 ------------AEKFVEFLKRNGILVRDCTSFGLPGYIRFSVR-DREENEKLIRALREW 309 (311)
T ss_pred ------------HHHHHHHHHHCCeEEEecccCCCCCeEEEEeC-CHHHHHHHHHHHHHh
Confidence 14678889999999998742 45677665 445677777777764
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=205.42 Aligned_cols=346 Identities=12% Similarity=0.113 Sum_probs=212.3
Q ss_pred EEEcC--CCEEEeccCChhhccCCCCCHHHHHHHHHHHHh-------------cCC---CCCCCHHHHHHHHHHHhhCC-
Q 011959 93 MWDID--GNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-------------GTS---FGAPCLLENVLAEMVISAVP- 153 (474)
Q Consensus 93 ~~d~d--G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-------------~~~---~~~~~~~~~~la~~l~~~~~- 153 (474)
.||.+ -+-||++...- |.| .+..+.+.+++..+. ... +.+...++.++|+.+.++++
T Consensus 39 ~~~~~~np~g~i~l~~ae--N~l--~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~ 114 (447)
T PLN02607 39 PYDESHNPSGVIQMGLAE--NQV--SFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGG 114 (447)
T ss_pred CCCcccCCCceEEEechh--hhh--hHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCC
Confidence 35543 33477765442 323 456677666664320 011 12346788889999887642
Q ss_pred ----CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEcc
Q 011959 154 ----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229 (474)
Q Consensus 154 ----~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 229 (474)
.+++|++|+|+++|++.++.. ....++.|++..|.|.+.........|..+..+......++ .
T Consensus 115 ~~~v~p~~Ivit~G~t~al~~l~~~--l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f-----------~ 181 (447)
T PLN02607 115 KARFDPDRIVLTAGATAANELLTFI--LADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNF-----------Q 181 (447)
T ss_pred CCCcCHHHeEEcCChHHHHHHHHHH--hCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCC-----------c
Confidence 467999999999999998773 23456778888888877644332233433322211101111 0
Q ss_pred CCCHHHHHHHHhc---CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc--ccc-
Q 011959 230 FNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA--QEY- 302 (474)
Q Consensus 230 ~~d~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~--~~~- 302 (474)
-|++++++.+++ .+.+++++++..++|++|.+.+.++ +++|.++|++|++.||+||+|.++ ..+..+. .+.
T Consensus 182 -~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~-l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~ 259 (447)
T PLN02607 182 -VTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSV-LEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIV 259 (447)
T ss_pred -CCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHH-HHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHH
Confidence 178899888764 2236777777666788898887655 999999999999999999999875 3322221 111
Q ss_pred --cCC-C-Cc-e---eehhhhcC-CCcceEEEEe-cHHHHHhhcCCCCcccccCC-CCChHHHHHHHHHHHHhcCCCHH-
Q 011959 303 --FGV-T-PD-L---TTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKEPGTY- 370 (474)
Q Consensus 303 --~g~-~-pd-i---~t~sK~l~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~~~- 370 (474)
.+. . ++ + .+|||.|| +|+|+||+++ ++++++.+.. . ..+ ..+.+++.++.+.|+ ++++.
T Consensus 260 ~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~---~---~~~~~~s~~~q~~~~~~L~---d~~~~~ 330 (447)
T PLN02607 260 EARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARR---M---SSFTLVSSQTQHLLASMLS---DEEFTE 330 (447)
T ss_pred hhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHH---H---hhcCCCCHHHHHHHHHHhC---CchhHH
Confidence 111 1 22 2 27999999 8999999987 6777776652 1 122 346667766666554 33333
Q ss_pred HHHHHHHHHHHH---HHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC-
Q 011959 371 EYLNKITGELTQ---GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ- 445 (474)
Q Consensus 371 ~~~~~~~~~l~~---~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~- 445 (474)
+.+.++.+++++ .+.+.+.++++....+..|+++|+.+.... ..+..+...++++.+++ +||.+.|+.
T Consensus 331 ~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~-------~~~~~~~e~~l~~~ll~~~gV~v~pG~~ 403 (447)
T PLN02607 331 NYIRTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLL-------ETPTREGELALWDSILREVKLNISPGSS 403 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCeeEEEEEEchHhh-------cCCCchhHHHHHHHHHHhCCEEEcCccc
Confidence 233333333322 233333344544333456888898874310 00111122456766665 699999873
Q ss_pred -----CcceEEecCC-cHHHHHHHHHHHHHHHhh
Q 011959 446 -----FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 -----~~~~~~~~~~-t~e~i~~~l~~l~~~~~~ 473 (474)
.+++|+++.. +++++++++++|.+++++
T Consensus 404 f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~ 437 (447)
T PLN02607 404 CHCSEPGWFRVCFANMSEDTLEVALKRIHRFMDR 437 (447)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 2467888885 899999999999998853
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=201.20 Aligned_cols=294 Identities=12% Similarity=0.117 Sum_probs=184.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCC
Q 011959 140 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK 219 (474)
Q Consensus 140 ~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~ 219 (474)
...++.+.+++++ +.+.+++++||++++..++... ...++.|++....++... ..+...|..
T Consensus 52 ~~~~~~e~lA~~~-g~~~~~i~~g~~~a~~~~~~~l--~~~gd~Vl~~~~~h~s~~-~~~~~~g~~-------------- 113 (370)
T TIGR02539 52 PIHDFLEDLAEFL-GMDEARVTHGAREGKFAVMHAL--CKEGDWVVLDGLAHYTSY-VAAERAGLN-------------- 113 (370)
T ss_pred HHHHHHHHHHHHh-CCCceEEECChHHHHHHHHHHh--hCCCCEEEECCcccHHHH-HHHHHcCCE--------------
Confidence 4567777788887 5677888999999999998842 233455555444544433 333333332
Q ss_pred CCCCceEEccCC-------CHHHHHHHHhcC----CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011959 220 GATYETLTAPFN-------DVSALENLFENN----KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (474)
Q Consensus 220 ~~~~~~~~~~~~-------d~~~le~~l~~~----~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (474)
+..+|++ |+++|++.++.. .+++++|+++.+++++|.+.+ +++|.++|++||++||+||+
T Consensus 114 -----~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDea 184 (370)
T TIGR02539 114 -----VKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNCA 184 (370)
T ss_pred -----EEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEECc
Confidence 3333332 899999988642 125678888888888999988 99999999999999999999
Q ss_pred ccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCC-----CCChHHHHHHHHHH
Q 011959 289 MTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL-----SGNPLAMTAGIHTL 361 (474)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~-----~~~~~~~aaa~aal 361 (474)
|.....+. .. ....+|++ |++|++++|.|+||+++++++++.+......+...+. .....++.++.+++
T Consensus 185 ~~~g~~~~--~~--~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 260 (370)
T TIGR02539 185 YTVGRMPV--SA--KEIGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASF 260 (370)
T ss_pred cccCCcCC--CH--HHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHH
Confidence 96211110 11 11235654 7999999777899999999999988753322111110 11223555666667
Q ss_pred HHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCee--EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCC
Q 011959 362 KRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 438 (474)
Q Consensus 362 ~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 438 (474)
+...+ -....+..++.++++++|+++ ++.. ..+....++.+.+.... .....+......+.+.|.++|
T Consensus 261 ~~~~~~l~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~s~t~~v~~~~~~~~-----~~~~~~~~~~~~~~~~L~e~G 331 (370)
T TIGR02539 261 PHVVERVKRWDEEVKKTRWFVAELEDI----GFIQLGQKPKEHDLVKFETPGFH-----EIAQKHKRRGYFLYEELKKRG 331 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC----CcEEEccCCCcCceEEEECCchh-----HHhhhhccccHHHHHHHHhCC
Confidence 64322 111223334456788888765 3221 11234555554432100 000011122356889999999
Q ss_pred eE-ecccCCcceEEe-cCCcHHHHHHHHHHHHHHHhh
Q 011959 439 VY-FAPSQFEAGFTS-LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 439 v~-v~~~~~~~~~~~-~~~t~e~i~~~l~~l~~~~~~ 473 (474)
|+ +.++....+|++ ..+|++|+++++++|++++++
T Consensus 332 I~~ir~~~~~~iRis~~~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 332 IHGIRSGQTKYFKLSVYGLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred CccccCCcceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 98 776544567776 568999999999999998875
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=203.53 Aligned_cols=335 Identities=15% Similarity=0.119 Sum_probs=199.7
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc------CCCC---CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG------TSFG---APCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~------~~~~---~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~ 168 (474)
|..++|+..|. ..++ .+|.+.+++.+.+.+. ..|+ +...+++++++.+.+..-..++|++|+|+++++
T Consensus 32 ~~~~i~l~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al 108 (402)
T TIGR03542 32 SADIIRLGIGD--TTQP-LPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDV 108 (402)
T ss_pred CCCeEEcCCCC--CCCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHH
Confidence 46678888773 2233 4788999998887653 1122 223555666665432112578999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCC-CCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~-~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
..... .+.+++.|++.+|+|.++...+. ..|. ++.. ..+. ...+..++.+.-+.+..-+.+. .++
T Consensus 109 ~~l~~---l~~~gd~Vlv~~P~y~~~~~~~~-~~g~~~~~~-----~~~~----~~~~~~v~~~~~~~~~~~~~~~-~~~ 174 (402)
T TIGR03542 109 FRLQS---LFGSDNTVAVQDPVYPAYVDSNV-MAGRAGVLD-----DDGR----YSKITYLPCTKENNFIPDLPEE-PKI 174 (402)
T ss_pred HHHHH---hcCCCCEEEEeCCCCcchHHHHH-HcCCccccc-----cccc----cceEEEeecchhhCCCCCcccc-CCc
Confidence 87544 34566789999999988654443 3332 1110 0000 0022333321100110001111 256
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-Ccc-ccccCCC---CceeehhhhcC-CCc
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGA-QEYFGVT---PDLTTLGKIIG-GGL 320 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~-~~~~g~~---pdi~t~sK~l~-~G~ 320 (474)
++|++..++|++|.+.+.++ +++|.++|++||++||+||+|..| ..+. ... ....+.. ..+.+|||.+| +|+
T Consensus 175 ~~i~l~nP~NPTG~~~s~~~-~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGl 253 (402)
T TIGR03542 175 DIIYLCSPNNPTGTVLTKEQ-LKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGV 253 (402)
T ss_pred eEEEEeCCCCCCCccCCHHH-HHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCc
Confidence 77777677788998887666 999999999999999999999988 4332 111 1111111 12337999998 899
Q ss_pred ceEEEEecHHHH--------HhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhh
Q 011959 321 PVGAYGGRRDIM--------EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGK 389 (474)
Q Consensus 321 ~iG~~~~~~~i~--------~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~ 389 (474)
|+||++++++++ ..+.. .......+.+.+++.++.+.++.-.. .+..+.++++.+.+.+.|++
T Consensus 254 RiG~~i~~~~l~~~~~~~~~~~~~~---~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~--- 327 (402)
T TIGR03542 254 RLGWTVVPKELTYADGHSVIQDWER---RQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEA--- 327 (402)
T ss_pred ceEEEEecHHHhhcchhhHHHHHHH---HhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHh---
Confidence 999999998876 22210 01111224577888777666642110 11233344444555555544
Q ss_pred hcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHH
Q 011959 390 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQH 462 (474)
Q Consensus 390 ~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~ 462 (474)
+++....+..|.++++.+... ....++.+.|+ ++||.+.|+. .+++|+++..+++++++
T Consensus 328 -~~~~~~~~~~~~f~~v~l~~~-------------~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~ 393 (402)
T TIGR03542 328 -AGFKVYGGEHAPYLWVKTPEG-------------ISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFGKRENIVE 393 (402)
T ss_pred -cCceecCCCceeEEEEECCCC-------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHH
Confidence 333222223567888877421 01246777777 5699998863 24578887779999999
Q ss_pred HHHHHHHH
Q 011959 463 TITAAEKV 470 (474)
Q Consensus 463 ~l~~l~~~ 470 (474)
++++|+++
T Consensus 394 ~l~~l~~~ 401 (402)
T TIGR03542 394 ACERIKEA 401 (402)
T ss_pred HHHHHHhh
Confidence 99999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=206.94 Aligned_cols=305 Identities=13% Similarity=0.117 Sum_probs=198.3
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhc
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT 179 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~ 179 (474)
.+|+.+|. +++|. ++.+. .... ..||.....+|+++++++++ ..++|++++|++|++..+++. +.
T Consensus 30 ~~~l~~Ne--np~~~-~~~~~------~~~~--~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~---~~ 95 (351)
T PRK01688 30 DVWLNANE--YPTAV-EFQLT------QQTL--NRYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRA---FC 95 (351)
T ss_pred ceEecCCC--CCCCC-Chhhc------cccc--ccCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHH---hc
Confidence 57887775 66763 34321 1112 22455556789999998887 678999999999999999984 43
Q ss_pred C--CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccC
Q 011959 180 G--RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (474)
Q Consensus 180 ~--~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (474)
+ ++.|++.+++|..+. ......|..+..++...... -|++++++.+. ++++|++..++|
T Consensus 96 ~~g~~~vli~~P~y~~y~-~~~~~~G~~~~~v~~~~~~~--------------~d~~~l~~~~~----~~~lv~l~nPnN 156 (351)
T PRK01688 96 EPGKDAILYCPPTYGMYS-VSAETIGVEIRTVPTLDNWQ--------------LDLPAIADNLD----GVKVVYVCSPNN 156 (351)
T ss_pred CCCCCEEEEcCCCHHHHH-HHHHHcCCEEEEeecCCCCC--------------CCHHHHHHhcc----CCcEEEEeCCCC
Confidence 3 367888889886543 33334444333221110001 17888887763 456666666678
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEecHHHH
Q 011959 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIM 332 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~i~ 332 (474)
++|.+.+.++ +++|.+.|++ +++||+||+|..| .... ........++++ ||||++| +|+|+||++++++++
T Consensus 157 PTG~~~~~~~-l~~l~~~~~~-~~~vivDEay~~f~~~~s--~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i 232 (351)
T PRK01688 157 PTGNLINPQD-LRTLLELTRG-KAIVVADEAYIEFCPQAS--LAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVI 232 (351)
T ss_pred CCCCCCCHHH-HHHHHHhCCC-CcEEEEECchhhcCCCCC--hHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHH
Confidence 8999887655 7778777776 6899999999887 3211 112222234544 7999999 899999999999999
Q ss_pred HhhcCCCCcccccCCCCChHHHHHHHHHHHHh--cC-CCHHHHHHHHHHHHHHHHHHHhhhcCCe-eEEeeeceeEEEEE
Q 011959 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE-PGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFF 408 (474)
Q Consensus 333 ~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~v~~~g~~~~i~~ 408 (474)
+.+.+. ...++.|.+++.++.++|+.. +. .+..+.+.+.++++.+.|++ ++.. ...++.++++++.+
T Consensus 233 ~~l~~~-----~~~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~~ps~~nfi~~~~ 303 (351)
T PRK01688 233 NLLLKV-----IAPYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKE----IPCVEQVFDSETNYILARF 303 (351)
T ss_pred HHHHhc-----cCCCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh----CCCCCeECCCCCcEEEEEc
Confidence 888742 124567777787877777521 00 22233444444555555543 3222 23355677777665
Q ss_pred ecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----CcceEEecCCcHHHHHHHHHHHH
Q 011959 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSDDIQHTITAAE 468 (474)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~~~~~~t~e~i~~~l~~l~ 468 (474)
.+ ..++.+.|+++||++++.+ .+++|+++. +++++++++++|+
T Consensus 304 ~~----------------~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~-~~~e~~~l~~al~ 351 (351)
T PRK01688 304 TA----------------SSAVFKSLWDQGIILRDQNKQPGLSNCLRITIG-TREECQRVIDALR 351 (351)
T ss_pred CC----------------HHHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC-CHHHHHHHHHhhC
Confidence 21 2578889999999998643 245788755 7899999998873
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=197.45 Aligned_cols=312 Identities=13% Similarity=0.132 Sum_probs=197.3
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar 176 (474)
+..++||..|. ++++ .++.+++++.+.+.....|.. .....+|.+.++++++ ..++|++|+|+++++..+++
T Consensus 21 ~~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~Y~~-~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~--- 93 (349)
T PRK07908 21 GPGLLDFAVNV--RHDT-PPEWLRERLAARLGDLAAYPS-TEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR--- 93 (349)
T ss_pred CCCeEEecCCC--CCCC-CCHHHHHHHHHHhhHhhcCCC-ccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh---
Confidence 56899998873 3344 688899999998765433321 2234566666666665 67899999999999998877
Q ss_pred hhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
+ .++++++..++|.... ..+...|..+..++.....++ |++.+ + ++++++++..++
T Consensus 94 -l-~~~~viv~~P~y~~~~-~~~~~~G~~i~~v~~~~~~~~--------------d~~~l----~---~~~~~i~l~np~ 149 (349)
T PRK07908 94 -L-RPRRAAVVHPSFTEPE-AALRAAGIPVHRVVLDPPFRL--------------DPAAV----P---DDADLVVIGNPT 149 (349)
T ss_pred -c-CCCeEEEeCCCChHHH-HHHHHcCCEEEeeccCcccCc--------------ChhHh----c---cCCCEEEEcCCC
Confidence 2 2367777888886643 333344543322211100010 44433 2 245677776667
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEecHHHH
Q 011959 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIM 332 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~i~ 332 (474)
|++|.+.+ .++|.++|++ +.++|+||+|..|..+........+. ++++ +|||.++ +|+|+||++++++++
T Consensus 150 NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~-~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~ 223 (349)
T PRK07908 150 NPTSVLHP----AEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDL-PGVLVLRSLTKTWSLAGLRVGYALGAPDVL 223 (349)
T ss_pred CCCCCCcC----HHHHHHHHhc-CCEEEEECcchhhccCCccccccccC-CCEEEEeecccccCCccceeeeeecCHHHH
Confidence 88999998 5567888864 78888999998762222111111121 2333 7999999 899999999999999
Q ss_pred HhhcCCCCcccccCCCCChHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEe
Q 011959 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-E--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (474)
Q Consensus 333 ~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (474)
+.+.+.. . .+..+++.++++.+.++... + ++..++++++++++.+.|++ +++....+..|+++++.+.
T Consensus 224 ~~~~~~~---~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~p~~g~~~~~~~~ 294 (349)
T PRK07908 224 ARLTRGR---A--HWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRA----VGARVVDPAAAPFVLVRVP 294 (349)
T ss_pred HHHHhcC---C--CCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh----CCcEeccCCCceEEEEECC
Confidence 9887421 1 24455666665554443100 0 22334444445555555543 3433333356888887763
Q ss_pred cCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
+ ...+.+.|.++||.+.++. .+++|+++ .+++++++++++|++++.
T Consensus 295 ~----------------~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~-~~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 295 D----------------AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV-RPRAEVPVLVQALAEILK 346 (349)
T ss_pred c----------------HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe-CCCccHHHHHHHHHHHHh
Confidence 2 1467788889999998752 24678887 478899999999998765
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=198.32 Aligned_cols=331 Identities=17% Similarity=0.162 Sum_probs=198.3
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHH-HHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGET-MKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~ 178 (474)
+++||.++.+. ..+|.+.+++.+. ... ..+ ++.+...+|.+.+++++ +.+.++++++|++++..++... .
T Consensus 6 ~~~~~~~~~~~----~~~~~~~~a~~~~~~~~-~~~-~~~~~~~~l~~~la~~~-~~~~~~~~~~Gs~a~~~~l~~~--~ 76 (353)
T PLN02721 6 RVVDLRSDTVT----KPTDAMRAAMANAEVDD-DVL-GYDPTALRLEEEMAKIF-GKEAALFVPSGTMGNLISVLVH--C 76 (353)
T ss_pred hhhhhhccccc----CCCHHHHHHHHhccCCC-ccc-CCCHHHHHHHHHHHHHh-CCceeEEecCccHHHHHHHHHH--c
Confidence 46788888533 3689999998764 221 122 23444678888888888 4566889999999998888742 2
Q ss_pred c-CCcEEEEEeCCCCCCchh--HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC----CCCeEEEE
Q 011959 179 T-GRERIIKFEGCYHGHADP--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN----KGEIAAII 251 (474)
Q Consensus 179 ~-~~~~ii~~~~~yhg~~~~--~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~----~~~~a~vi 251 (474)
. +++.|++.+++|...... .....|..+..+ +..+.. ..|++++++.+++. .+++++|+
T Consensus 77 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v--~~~~~~------------~~d~~~l~~~i~~~~~~~~~~~~~v~ 142 (353)
T PLN02721 77 DVRGSEVILGDNSHIHLYENGGISTLGGVHPRTV--KNNEDG------------TMDLDAIEAAIRPKGDDHFPTTRLIC 142 (353)
T ss_pred cCCCCeEEEcCccceehhcccchhhhcCceeEec--CCCcCC------------CcCHHHHHHHHHhccCCCCCcceEEE
Confidence 2 567888888876433321 222223222111 110000 01799999998742 13678899
Q ss_pred EccccCC-CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-CccccccCCCCc--eeehhhhcCCCcceEE-E
Q 011959 252 LEPVVGN-SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPD--LTTLGKIIGGGLPVGA-Y 325 (474)
Q Consensus 252 ~ep~~~~-~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~~pd--i~t~sK~l~~G~~iG~-~ 325 (474)
+++++++ +|.+. +.+.+++|.++|++||++||+||+|. + .... ...........| ++++||++++ |+|+ +
T Consensus 143 l~~~~~np~G~~~-~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~--~~G~~~ 218 (353)
T PLN02721 143 LENTHANCGGRCL-SVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVKAADSVSVCLSKGLGA--PVGSVI 218 (353)
T ss_pred EeccccccCCccc-cHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhhhCCEEEEecccccCC--ceeeEE
Confidence 9887766 55555 45559999999999999999999984 2 1000 001111111233 4579999974 5776 5
Q ss_pred EecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee-EEeeeceeE
Q 011959 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMF 404 (474)
Q Consensus 326 ~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~~ 404 (474)
++++++++.+......... +.......+++++.+++.. .+..++..++.+++.+.|+++. ++.. ..+..+.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~ 292 (353)
T PLN02721 219 VGSKSFIRKAKRLRKTLGG-GMRQVGVLAAAALVALQEN--VPKLEDDHKKAKLLAEGLNQIK---GLRVNVAAVETNIV 292 (353)
T ss_pred ecCHHHHHhHHHHHHhcCC-CeehhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCC---CcEEecCCccceEE
Confidence 7888888776421111111 1111122233344444322 1123334455666777666531 2211 112345666
Q ss_pred EEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHHHHHhhC
Q 011959 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
++.+.... ......+++.|.++||.+.+.+...+|++ +.++++++++++++|++++..+
T Consensus 293 ~~~~~~~~-----------~~~~~~~~~~L~~~gi~v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~~ 353 (353)
T PLN02721 293 YFDITDGS-----------RITAEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCFQQAALTL 353 (353)
T ss_pred EEEccCCc-----------cccHHHHHHHHHhCCcEEecCCCceEEEEecCcCCHHHHHHHHHHHHHHhhcC
Confidence 77663210 01235789999999999999877777775 4679999999999999987643
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=206.58 Aligned_cols=332 Identities=14% Similarity=0.152 Sum_probs=203.0
Q ss_pred CHHHHHHHHHHHHh--cC---CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHhHhh-cCCcEE
Q 011959 117 DDQVLAALGETMKK--GT---SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAF-TGRERI 184 (474)
Q Consensus 117 ~p~v~~a~~~~~~~--~~---~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~al~~ar~~-~~~~~i 184 (474)
+.++++.+.+.+.. +. .|+ +..++++.+++++.++.+ ..++|++|+|+++|+..++++. . ..++.|
T Consensus 142 p~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l--~~~~gd~V 219 (534)
T PLN02231 142 SADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL--IRSEKDGI 219 (534)
T ss_pred CHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHh--ccCCCCEE
Confidence 45677777776664 21 122 245678888888877643 5789999999999999999942 2 246889
Q ss_pred EEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC---CCeEEEEEccccCCCCc
Q 011959 185 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILEPVVGNSGF 261 (474)
Q Consensus 185 i~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~a~vi~ep~~~~~G~ 261 (474)
++..|+|.++. ..+...|..+..+++....++ . -|+++|++.+++.. .+++++++..++|++|.
T Consensus 220 li~~P~Y~~y~-~~~~~~g~~~v~~~l~~~~~~---------~---~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~ 286 (534)
T PLN02231 220 LCPIPQYPLYS-ASIALHGGTLVPYYLDEATGW---------G---LEISELKKQLEDARSKGITVRALVVINPGNPTGQ 286 (534)
T ss_pred EEeCCCChhHH-HHHHHcCCEEEEEecCcccCC---------C---CCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCc
Confidence 99999998754 333444443322211100000 0 17899999886421 14666665555778998
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc-CCCc-cccc----cCC---CCcee---ehhhhc-C-CCcceEEEE
Q 011959 262 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-AYGG-AQEY----FGV---TPDLT---TLGKII-G-GGLPVGAYG 326 (474)
Q Consensus 262 i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~-g~~~-~~~~----~g~---~pdi~---t~sK~l-~-~G~~iG~~~ 326 (474)
+.+.++ +++|.++|++||++||+||+|..+ .. +..+ .... .|. ...++ +|||++ + +|+|+||++
T Consensus 287 vls~e~-l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~ 365 (534)
T PLN02231 287 VLAEEN-QRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 365 (534)
T ss_pred CCCHHH-HHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEE
Confidence 887666 999999999999999999999888 53 3222 1111 111 12244 799987 5 799999997
Q ss_pred e---cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc--C----------CCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 327 G---RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--E----------PGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 327 ~---~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--~----------~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
+ ++++++.+.+. .. .+.+.+.+++.++..+++--. + +.+.+.++++.+.+.+.|+++
T Consensus 366 ~~~~~~~l~~~l~k~---~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~---- 437 (534)
T PLN02231 366 VTGFTSDVREQIYKV---AS-VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSL---- 437 (534)
T ss_pred EecCCHHHHHHHHHH---Hh-hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 5 68888887632 11 234556777777776663210 0 123345555566666655543
Q ss_pred CCeeEEeeeceeEEE-EEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccCC-------cceEEecCCcHHHHHH
Q 011959 392 GHAICGGYISGMFGF-FFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-------EAGFTSLAHSSDDIQH 462 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-------~~~~~~~~~t~e~i~~ 462 (474)
+.....++.|.|+.+ .+.-+. ................++..|+ +.||.+.|+.. .++|+++..+++++++
T Consensus 438 ~gi~~~~p~Ggfylw~~l~lp~-~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~~~e~l~e 516 (534)
T PLN02231 438 EGVTCNKAEGAMYLFPRIHLPQ-KAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPA 516 (534)
T ss_pred CCceecCCCeeeEEeccccCcH-HHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeCCCHHHHHH
Confidence 222334455555444 332100 0000000000000123556565 56999998731 2478888889999999
Q ss_pred HHHHHHHHHhh
Q 011959 463 TITAAEKVLRQ 473 (474)
Q Consensus 463 ~l~~l~~~~~~ 473 (474)
++++|.+++++
T Consensus 517 al~RL~~~~~~ 527 (534)
T PLN02231 517 IVSRLTEFHKS 527 (534)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=202.78 Aligned_cols=320 Identities=14% Similarity=0.128 Sum_probs=204.3
Q ss_pred CChhhccCCCCCHHHHHHHHHHHHhc-CCCC--------CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHh
Q 011959 106 GSWGPAIIGHADDQVLAALGETMKKG-TSFG--------APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (474)
Q Consensus 106 ~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~--------~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~a 175 (474)
.+++....||++|++++++..+. .. +.|. +..+++.+++++++++++ +.+.+.++++|+++.+.++..+
T Consensus 23 ~~l~~g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~ 101 (398)
T cd00613 23 SFLGSGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAA 101 (398)
T ss_pred ccccccccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHH
Confidence 34444678999999988877766 32 1222 123567889999999885 3447888887887777777765
Q ss_pred HhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-----CHHHHHHHHhcCCCCeEEE
Q 011959 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENNKGEIAAI 250 (474)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~a~v 250 (474)
+...++++.|++...+|+.+...+...+... + .++..++++ |++++++.+. +++++|
T Consensus 102 ~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~---------g------~~~~~v~~~~~~~~d~~~l~~~i~---~~t~~v 163 (398)
T cd00613 102 IRAYHKRNKVLVPDSAHPTNPAVARTRGEPL---------G------IEVVEVPSDEGGTVDLEALKEEVS---EEVAAL 163 (398)
T ss_pred HhcccCCCEEEEcCccCcchHHHHHHhcccC---------C------cEEEEeccCCCCCcCHHHHHHhcC---CCeEEE
Confidence 5443234455566778888877776655210 0 012222221 6888888875 368899
Q ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcC----CCcceE
Q 011959 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIG----GGLPVG 323 (474)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~----~G~~iG 323 (474)
++++++ ++|.+. +++++|+++|++||++||+|++|... .... ...+ .+|++ +++|.+. ||+++|
T Consensus 164 iv~~~~-~~G~~~---~~l~~i~~la~~~g~~livD~~~~~~~~~~~---~~~~--~~d~~~~s~~K~~~p~g~Ggp~~g 234 (398)
T cd00613 164 MVQYPN-TLGVFE---DLIKEIADIAHSAGALVYVDGDNLNLTGLKP---PGEY--GADIVVGNLQKTGVPHGGGGPGAG 234 (398)
T ss_pred EEECCC-CCceec---chHHHHHHHHHhcCCEEEEEeccccccCCCC---hHHc--CCCEEEeeccccCCCCCCCCCcee
Confidence 998865 678774 34799999999999999999998522 1111 1122 36766 5788773 368899
Q ss_pred EEEecHHHHHhhcCCC-----------C---------------cccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHH
Q 011959 324 AYGGRRDIMEMVAPAG-----------P---------------MYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLN 374 (474)
Q Consensus 324 ~~~~~~~i~~~~~~~~-----------~---------------~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~ 374 (474)
+++.++++++.+.... . .....+++++++.++++.++++.+.+ +++.++++
T Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~ 314 (398)
T cd00613 235 FFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAH 314 (398)
T ss_pred EEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9999988887653210 0 01123456677777777777776654 34567888
Q ss_pred HHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc---CCcceEE
Q 011959 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS---QFEAGFT 451 (474)
Q Consensus 375 ~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---~~~~~~~ 451 (474)
+++++++++|+++.... ... ......+.+.+.. .......++++.|+++||++... +...+|+
T Consensus 315 ~~~~~l~~~L~~~~~~~-~~~--~~~~~~v~~~~~~-----------~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRi 380 (398)
T cd00613 315 LNANYLAKRLKEVGGVL-PFN--GPFFHEFVLRLPP-----------LYGIRAEDLAKALIDGGFHAPTMYLPVDGTLMI 380 (398)
T ss_pred HHHHHHHHHHHhcCCcc-cCC--CCeeEEEEEEcCC-----------cchHHHHHHHHhhhhcCccccccccCCCCeEEE
Confidence 88888888888753221 010 0111112333211 00123467889999999987653 3345665
Q ss_pred --ecCCcHHHHHHHHHHH
Q 011959 452 --SLAHSSDDIQHTITAA 467 (474)
Q Consensus 452 --~~~~t~e~i~~~l~~l 467 (474)
+..+|+||||+++++|
T Consensus 381 s~~~~~t~edid~~~~~L 398 (398)
T cd00613 381 EPTETETKEELDALLEAL 398 (398)
T ss_pred EcCCCCCHHHHHHHHHhC
Confidence 5788999999999864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=197.80 Aligned_cols=314 Identities=18% Similarity=0.180 Sum_probs=201.2
Q ss_pred CCHHHHHHHHHHHHhc---CCC---CCCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEE
Q 011959 116 ADDQVLAALGETMKKG---TSF---GAPCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 186 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~---~~~---~~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~ 186 (474)
.+|.+++++.+ .... ..+ ....+++..+++.+...++ ..+.+++++||++++..+++.. ...+++|++
T Consensus 12 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~--~~~g~~vl~ 88 (350)
T cd00609 12 PPPEVLEALAA-AALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRAL--LNPGDEVLV 88 (350)
T ss_pred CCHHHHHHHHH-HhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHh--CCCCCEEEE
Confidence 46666666554 1111 111 2345677788888877653 3678999999999999999853 234577777
Q ss_pred EeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCH
Q 011959 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 187 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
.+++|++.. ..+...+..+..++....... ..+.+.+++.. .+++++|+++++++++|.+.+.+
T Consensus 89 ~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~---~~~~~~v~i~~~~~~tG~~~~~~ 152 (350)
T cd00609 89 PDPTYPGYE-AAARLAGAEVVPVPLDEEGGF------------LLDLELLEAAK---TPKTKLLYLNNPNNPTGAVLSEE 152 (350)
T ss_pred cCCCchhHH-HHHHHCCCEEEEEecccccCC------------ccCHHHHHhhc---CccceEEEEECCCCCCCcccCHH
Confidence 777776643 333333322211111100000 00113444433 24789999999888899877644
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc----cccccCCCCceeehhhhcC-CCcceEEEEecH-HHHHhhcCCC
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGG----AQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAG 339 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~----~~~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~-~i~~~~~~~~ 339 (474)
.+.+|.++|++||+++|+||+|+++ ..+... .....+....+.+++|.++ +|+++|++++++ ++++.+..
T Consensus 153 -~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~-- 229 (350)
T cd00609 153 -ELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKK-- 229 (350)
T ss_pred -HHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHH--
Confidence 4999999999999999999999877 443321 1111222222347999999 889999999999 78888863
Q ss_pred CcccccCCCCChHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHHHHhhhcCCee-EEeeeceeEEEEEecCCCcCc
Q 011959 340 PMYQAGTLSGNPLAMTAGIHTLKRLK-E-PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNF 416 (474)
Q Consensus 340 ~~~~~~t~~~~~~~~aaa~aal~~~~-~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~~~i~~~~~~~~~~ 416 (474)
.....+++.+..++.++..+|+... . +...++++++.+++++.|++.. ... .....|.++++.+...
T Consensus 230 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~~g~~~~~~~~~~----- 299 (350)
T cd00609 230 -LLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELG----PLVVVKPSGGFFLWLDLPEG----- 299 (350)
T ss_pred -HHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcC----CccccCCCccEEEEEecCCC-----
Confidence 2233456778888888888887652 1 4455666666666766666542 221 3445677777766321
Q ss_pred ccccccchHHHHHHHHHHHHCCeEeccc------CCcceEEecCCcHHHHHHHHHHHHH
Q 011959 417 EDAKKSETTKFARFYRGMLEEGVYFAPS------QFEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------~~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
.....+.+.|.++||.+.+. ....+|+++...++|+++++++|++
T Consensus 300 --------~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~~~~i~~~~~al~~ 350 (350)
T cd00609 300 --------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLAE 350 (350)
T ss_pred --------ChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCCHHHHHHHHHHhhC
Confidence 11245666777889999876 3346788665559999999998863
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-22 Score=199.64 Aligned_cols=297 Identities=16% Similarity=0.113 Sum_probs=175.6
Q ss_pred CHHHHHHHHHHHhhCCC---CCeEEE--eCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-
Q 011959 138 CLLENVLAEMVISAVPS---IEMVRF--VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL- 211 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~---~~~v~~--~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~- 211 (474)
.++++++++++.+.... .+.|.. +.+|+.+....+.+...+.+++.|++.+|+|.++. ..+...|..+..+++
T Consensus 94 ~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~-~~~~~~g~~~~~v~l~ 172 (423)
T PLN02397 94 AEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHH-NIFRDAGVPVRTYRYY 172 (423)
T ss_pred HHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHH-HHHHHcCCeEEEeecc
Confidence 46667777766544321 133321 33444443333333223446788999999987754 333344443322211
Q ss_pred C-CCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 011959 212 P-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290 (474)
Q Consensus 212 ~-~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (474)
+ ...+ .|++.+++.++...+++.++++...+|++|.+.+.++ +++|.++|++||++||+||+|.
T Consensus 173 ~~~~~~--------------~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~-l~~i~~~a~~~~~~vI~De~Y~ 237 (423)
T PLN02397 173 DPKTRG--------------LDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQ-WEQISDLIKSKNHLPFFDSAYQ 237 (423)
T ss_pred cCcCCc--------------cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhCCcEEEEecccC
Confidence 0 0011 1788888877654345677777778888998887665 9999999999999999999999
Q ss_pred Cc-ccCC--C-cccccc-CCCCcee---ehhhhcC-CCcceEEEE---ecHHHHHhhcC-CCCcccccCCCCChHHHHHH
Q 011959 291 GF-RLAY--G-GAQEYF-GVTPDLT---TLGKIIG-GGLPVGAYG---GRRDIMEMVAP-AGPMYQAGTLSGNPLAMTAG 357 (474)
Q Consensus 291 g~-r~g~--~-~~~~~~-g~~pdi~---t~sK~l~-~G~~iG~~~---~~~~i~~~~~~-~~~~~~~~t~~~~~~~~aaa 357 (474)
+| ..+. . .....+ ....+++ +|||+++ .|||+||++ .++++++.+.. ..........+.+.+++.++
T Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 317 (423)
T PLN02397 238 GFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIV 317 (423)
T ss_pred CccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Confidence 88 4321 1 111111 1112233 7999999 799999984 35665443221 00111122334566777777
Q ss_pred HHHHHHhc-------C-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHH
Q 011959 358 IHTLKRLK-------E-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 429 (474)
Q Consensus 358 ~aal~~~~-------~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 429 (474)
.++|+.-. . +++++.++++++.+.+.|+++....++....+..|.++|+.+. .+
T Consensus 318 ~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~------------------~~ 379 (423)
T PLN02397 318 ATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLN------------------KE 379 (423)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCCC------------------HH
Confidence 76664210 0 2344566666677777776652111122223444555555441 24
Q ss_pred HHHHHH-HCCeEecccCCcceEEecC-CcHHHHHHHHHHHHHHHh
Q 011959 430 FYRGML-EEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 430 ~~~~l~-~~Gv~v~~~~~~~~~~~~~-~t~e~i~~~l~~l~~~~~ 472 (474)
+++.|+ ++||++.+.+ |++++ .+++.+++++++|++++.
T Consensus 380 ~~~~Ll~~~~V~v~~~~----Ri~~~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 380 QVDRMTKEYHIYMTRDG----RISMAGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred HHHHHHHhCCEEECCCC----eEEEeeCCHHHHHHHHHHHHHHHh
Confidence 667776 5699997543 88775 899999999999999875
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-22 Score=196.03 Aligned_cols=319 Identities=19% Similarity=0.155 Sum_probs=199.7
Q ss_pred eccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCc
Q 011959 103 DYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 182 (474)
Q Consensus 103 D~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~ 182 (474)
||.+. +++| .+|.+++++.+.+.... ..++.....++.+.++++++ .+.++++++|++|+..+++.. ..+++
T Consensus 1 ~~~~~---~~~~-~~~~v~~a~~~~~~~~~-~~~~~~~~~~l~~~~a~~~g-~~~~~~~~~gt~a~~~~~~~l--~~~gd 72 (338)
T cd06502 1 DFRSD---TVTG-PTPEMLEAMAAANVGDD-VYGEDPTTAKLEARAAELFG-KEAALFVPSGTAANQLALAAH--TQPGG 72 (338)
T ss_pred Ccccc---cCCC-CCHHHHHHHHhcccCCc-ccCCCHHHHHHHHHHHHHhC-CCeEEEecCchHHHHHHHHHh--cCCCC
Confidence 67777 8888 88999999988654322 22456778899999999885 678999999999999999842 33445
Q ss_pred EEEEEeCCCCCCch-h--HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC----CCeEEEEEccc
Q 011959 183 RIIKFEGCYHGHAD-P--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK----GEIAAIILEPV 255 (474)
Q Consensus 183 ~ii~~~~~yhg~~~-~--~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~----~~~a~vi~ep~ 255 (474)
.|++. ..+|.... . .....|..+..++. ..+ ..|+++++++++++. +++++|+++++
T Consensus 73 ~v~~~-~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~-------------~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p 136 (338)
T cd06502 73 SVICH-ETAHIYTDEAGAPEFLSGVKLLPVPG--ENG-------------KLTPEDLEAAIRPRDDIHFPPPSLVSLENT 136 (338)
T ss_pred eEEEe-cCcceeeecCCcHHHHcCceEEeecC--CCC-------------cCCHHHHHHHhhccCCCcCCcceEEEEEee
Confidence 56654 44444322 1 11223332222111 000 128999999987521 25677777766
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc---ccCCCccccccCCCCcee--ehhhhcCCCcceEEE-EecH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY-GGRR 329 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~---r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~-~~~~ 329 (474)
+|+| .+.+ .+.+++|.++|++||++||+||+|..+ ..+. ....+...+|++ +++|+++. +.|++ ++++
T Consensus 137 ~n~g-~~~~-~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~~~~--~~g~~~~~~~ 210 (338)
T cd06502 137 TEGG-TVYP-LDELKAISALAKENGLPLHLDGARLANAAAALGV--ALKTYKSGVDSVSFCLSKGGGA--PVGAVVVGNR 210 (338)
T ss_pred cCCc-cccC-HHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC--CHHHHHhcCCEEEEeccccCCC--ccceEEECCH
Confidence 6654 4444 444999999999999999999998422 1121 112222245554 78999973 33554 6788
Q ss_pred HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEe
Q 011959 330 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (474)
Q Consensus 330 ~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (474)
++++.+..... ..+++++.+++.+++++++|+.-...+..+++.++.+++.+.|+++. .. .....+.++.+.+.
T Consensus 211 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~----~~-~~~~~~~~~~v~~~ 284 (338)
T cd06502 211 DFIARARRRRK-QAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEELG----GL-ESEVQTNIVLLDPV 284 (338)
T ss_pred HHHHHHHHHHH-HhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcC----CC-cccccCCeEEEecC
Confidence 88888763211 12245566777888887777531113445677777778888777642 21 11234455555432
Q ss_pred cCCCcCcccccccchHHHHHHHHHHH---HCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHH
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGML---EEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~---~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~ 469 (474)
. .......+.+.+. ++|+++.+.+...+|+ ++.+|++|++++++++++
T Consensus 285 ~------------~~~~~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 285 E------------ANAVFVELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred C------------ccHHHHHHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 1 1122334444443 7899998775566776 466799999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=197.69 Aligned_cols=285 Identities=12% Similarity=0.108 Sum_probs=183.4
Q ss_pred HHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcC-C-cEEEEEeCCCCCCchhHHHhcCCCCccCCCC-CCCC
Q 011959 141 ENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG-R-ERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSPG 216 (474)
Q Consensus 141 ~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~-~-~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~-~~~g 216 (474)
..+|.+.++++++ ..++|++++|+++++..+++ .+.. + +.|++.+++| +.........|..+..++.. ...+
T Consensus 61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~---~~~~~g~~~vlv~~p~y-~~~~~~~~~~g~~~~~v~~~~~~~~ 136 (364)
T PRK04781 61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVR---ALCVPGRDAVLVTPPVF-GMYAVCARLQNAPLVEVPLVDGADG 136 (364)
T ss_pred HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHH---HhcCCCCCeEEEcCCCh-HHHHHHHHHcCCEEEEEecCCCccC
Confidence 4667777777765 57899999999999999998 4433 3 5677666665 33333333444433322211 0111
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g 295 (474)
+. .|++++++.+.. +++++|++..++|++|.+.+.++ +++|.++|+ ++++||+||+|..| ...
T Consensus 137 ~~------------~d~~~l~~~~~~--~~~~lv~l~~p~NPTG~~~~~~~-~~~l~~~~~-~~~~iI~Deay~~f~~~~ 200 (364)
T PRK04781 137 FH------------ADVPAIVAAALA--SNAKLVFLCSPSNPAGSAIALDQ-IERALQALQ-GKALVVVDEAYGEFSDVP 200 (364)
T ss_pred CC------------cCHHHHHHHHhc--cCCeEEEEcCCCCCCCCCcCHHH-HHHHHHhCC-CCcEEEEeCcchhhcCCc
Confidence 10 167776554432 25677777777788999998555 666766664 47999999999888 321
Q ss_pred CCccccccCCCCcee---ehhhhcC-CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc--C-CC
Q 011959 296 YGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--E-PG 368 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--~-~~ 368 (474)
.. ....+..++++ ||||++| +|+|+||+++++++++.+.+. ...++.+.+++.++.++|+.-. . .+
T Consensus 201 ~~--~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~-----~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 273 (364)
T PRK04781 201 SA--VGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRC-----QAPYPVPTPCAALAEQALSAPALAVTAR 273 (364)
T ss_pred ch--HHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhc-----cCCCCCCHHHHHHHHHHHhcccHHHHHH
Confidence 11 11222334444 7999999 899999999999999988742 2346678888888887775311 0 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---
Q 011959 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--- 445 (474)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--- 445 (474)
..+.++++++.+.+.|+++ . ++....+..|+++++.+.+ ..++.+.|.++||.+.++.
T Consensus 274 ~~~~~~~~r~~l~~~L~~~-~--~~~~~~p~~g~f~~~~~~~----------------~~~~~~~l~~~gI~v~~~~~~~ 334 (364)
T PRK04781 274 RVAEVRAERERLHAALAQL-P--GVRRVYPSQGNFLLVRFDD----------------AEAAFQALLAAGVVVRDQRAAP 334 (364)
T ss_pred HHHHHHHHHHHHHHHHHhC-C--CCCeECCCCCcEEEEEcCC----------------HHHHHHHHHHCCeEEeeCCCCC
Confidence 2333444445555555432 0 2222346678888887631 1467888899999998863
Q ss_pred --CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 446 --FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 446 --~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
.+++|+++. +.++.++++++|+++..
T Consensus 335 ~~~~~~Ris~~-~~~~~~~l~~al~~~~~ 362 (364)
T PRK04781 335 RLSDALRITLG-TPEQNDRVLAALQRTQA 362 (364)
T ss_pred CCCCeEEEeCC-CHHHHHHHHHHHHHHHh
Confidence 235677765 67899999999988654
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-22 Score=193.47 Aligned_cols=320 Identities=17% Similarity=0.139 Sum_probs=196.0
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcC
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~ 180 (474)
+|||.++ .+-| .+|.+++++.+.......| ++.....+|.+.+++++ +.+.+++++||++++..++.. ....
T Consensus 1 ~~~~~~~---~~~~-p~~~~~~a~~~~~~~~~~Y-~~~~~~~~L~~~la~~~-g~~~~~v~~~g~~a~~~~l~~--~~~~ 72 (333)
T PRK10534 1 MIDLRSD---TVTR-PSRAMLEAMMAAPVGDDVY-GDDPTVNALQDYAAELS-GKEAALFLPTGTQANLVALLS--HCER 72 (333)
T ss_pred Ccccccc---cCCC-CCHHHHHHHHhccCCCccc-CCCHHHHHHHHHHHHHh-CCCeEEEeCchHHHHHHHHHH--hcCC
Confidence 3789988 5555 8899999998755443322 36777889999999888 566678999999999888874 2334
Q ss_pred CcEEEEEeCCCCCCchh-HHHhcC-CCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC---CCeEEEEEccc
Q 011959 181 RERIIKFEGCYHGHADP-FLVKAG-SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILEPV 255 (474)
Q Consensus 181 ~~~ii~~~~~yhg~~~~-~~~~~g-~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~a~vi~ep~ 255 (474)
+++|++..++|...... .....+ ..... .+.... + ..|+++|++.+..+. .++++|+++.+
T Consensus 73 gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----------~-~~d~~~l~~~i~~~~~~~~~~~lv~l~np 138 (333)
T PRK10534 73 GEEYIVGQAAHNYLYEAGGAAVLGSIQPQP--IDAAAD-----------G-TLPLDKVAAKIKPDDIHFARTRLLSLENT 138 (333)
T ss_pred CCeeEEechhhhhHhcCCchHHhcCceEEe--ecCCCC-----------C-CCCHHHHHHhhcccCcCcccceEEEEecC
Confidence 56677655544221111 011111 11111 010000 0 117899988885321 13566776643
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-CccccccCCCCc--eeehhhhcCCCcceE-EEEecHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPD--LTTLGKIIGGGLPVG-AYGGRRD 330 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~~pd--i~t~sK~l~~G~~iG-~~~~~~~ 330 (474)
+ +|.+.+.++ +++|.++|++||++||+||+|. | .... ...........| +++|||+++. ++| |++++++
T Consensus 139 ~--~G~v~~~~~-l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~--~~G~~~~~~~~ 212 (333)
T PRK10534 139 H--NGKVLPREY-LKQAWEFTRERNLALHVDGARI-FNAVVAYGCELKEITQYCDSFTICLSKGLGT--PVGSLLVGNRD 212 (333)
T ss_pred C--CCeecCHHH-HHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCHHHHHhcCCEEEEEeEcCCCC--cccceEEcCHH
Confidence 2 488887666 8999999999999999999986 3 2110 001111111123 4589998863 588 5788999
Q ss_pred HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEec
Q 011959 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410 (474)
Q Consensus 331 i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~ 410 (474)
+++.+...... ....++.+.++++++.++|+.. .+.+++..+.++++.+.|+++ ++. ..++.++|+++.+..
T Consensus 213 ~i~~~~~~~~~-~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~L~~~----g~~-~~~~~~nfv~~~~~~ 284 (333)
T PRK10534 213 YIKRARRWRKM-TGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQLREA----GAD-VMRQDTNMLFVRVGE 284 (333)
T ss_pred HHHHHHHHHHH-hCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHhC----CCc-cCCCCceEEEEECCc
Confidence 99888631111 1112233456677777777532 233344444556777777664 322 123457777766531
Q ss_pred CCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHh
Q 011959 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~ 472 (474)
.....+.+.|.++||++.++. .+++ ++.+|+|++++++++|++++.
T Consensus 285 --------------~~~~~~~~~l~~~gi~v~~~~--~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 285 --------------EQAAALGEYMRERNVLINASP--IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred --------------hhHHHHHHHHHHcCeeecCCc--eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 112567888999999998864 3455 345899999999999998764
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=203.75 Aligned_cols=335 Identities=16% Similarity=0.129 Sum_probs=189.5
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhh-C-C---C--CCeEEEeCCHHHHHHHHHHHhH---hh
Q 011959 113 IGHA-DDQVLAALGETMKKGTSFG---APCLLENVLAEMVISA-V-P---S--IEMVRFVNSGTEACMGVLRLAR---AF 178 (474)
Q Consensus 113 lG~~-~p~v~~a~~~~~~~~~~~~---~~~~~~~~la~~l~~~-~-~---~--~~~v~~~~sGseA~~~al~~ar---~~ 178 (474)
.+.. ++.|.+ +.+.+. +..|. +..++++++++.+.+. . . . .++|++|+|+++|+..++.... ..
T Consensus 110 p~~~~~~~v~e-~~~~~~-~~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll 187 (527)
T PRK09275 110 LGFDADEFVYE-LVDGII-GDNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLL 187 (527)
T ss_pred CCCCCCHHHHH-HHHHHh-cCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcC
Confidence 3444 445556 555553 33343 2346677777755432 1 1 1 3489999999999999987321 24
Q ss_pred cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCC--CCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~--~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
..+++|++.+|+|..+.... ...+.+...+.++. ..++ . -|++++++++. +++++|+++.++
T Consensus 188 ~pGD~Vlv~~P~y~~Y~~~~-~l~g~~~~~v~v~~~~~~~f-----------~-~d~~~l~~~~~---~~tkai~l~nP~ 251 (527)
T PRK09275 188 KAGDKIALMTPIFTPYLEIP-ELPRYDLEVVHINADEENEW-----------Q-YPDSELEKLRD---PSIKALFLVNPS 251 (527)
T ss_pred CCCCEEEEeCCChHHHHHHH-HHcCCCeEEEEeecCcccCC-----------C-CCHHHHHhhcC---CCCCEEEEeCCc
Confidence 56789999999998854332 23332221111111 0111 0 16888888765 356777776667
Q ss_pred CCCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCcccCCCccccccCCCC-ce---eehhhhcC-CCcceEEEEecH
Q 011959 257 GNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGFRLAYGGAQEYFGVTP-DL---TTLGKIIG-GGLPVGAYGGRR 329 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~r~g~~~~~~~~g~~p-di---~t~sK~l~-~G~~iG~~~~~~ 329 (474)
|++|.+.+.++ +++|.++|++ +|++||+||+|..|....... ....| .+ .+|||.++ +|||+||+++++
T Consensus 252 NPTG~v~s~e~-l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~---~~~~~~~~I~v~SfSK~f~mtG~RlG~i~~~~ 327 (527)
T PRK09275 252 NPPSVAMSDES-LEKIADIVNEKRPDLMIITDDVYGTFVDDFRSL---FAVLPYNTILVYSFSKYFGATGWRLGVIALHE 327 (527)
T ss_pred CCcCCCCCHHH-HHHHHHHHHhcCCCcEEEECCCChhhcccccCH---HHhCCCCEEEEeehhhhccCcHhHHhhhhcCc
Confidence 88898887665 9999999965 499999999998772111111 11123 22 37999998 899999999987
Q ss_pred H-----HHHhh-----------------------------cCCCCcccccCCCCChHHHHH-HHHHH-HHhcC-CCHHHH
Q 011959 330 D-----IMEMV-----------------------------APAGPMYQAGTLSGNPLAMTA-GIHTL-KRLKE-PGTYEY 372 (474)
Q Consensus 330 ~-----i~~~~-----------------------------~~~~~~~~~~t~~~~~~~~aa-a~aal-~~~~~-~~~~~~ 372 (474)
+ +++.+ .....+....|.+.+.+.|.+ ++.++ ..++. +.+.+.
T Consensus 328 ~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~~~~~~~~ 407 (527)
T PRK09275 328 DNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDEEDAYKKA 407 (527)
T ss_pred hhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCchHHHHH
Confidence 6 33322 000122334566777777665 32111 11222 222222
Q ss_pred HHHHHHHHHHHHHHHhhhcCCee--EEeeeceeEEEEEecCC----CcCcccccccchHHHHHHHHHHH-HCCeEecccC
Q 011959 373 LNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGFFFTEGP----VYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ 445 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~--~v~~~g~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~ 445 (474)
+.+.++++...+....+... ..+..+.++++++..-. ...+...... .....+|+..|+ +.||.+.|+.
T Consensus 408 ---~~~~~~~Rr~~l~~~Lg~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~-~~~~~~f~~~Ll~e~gV~v~PG~ 483 (527)
T PRK09275 408 ---MKDIIRRRYKALYEGLGLPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKK-NYSPVDLLFRLAEETGVVLLPGG 483 (527)
T ss_pred ---HHHHHHHHHHHHHHHcCCCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhc-cCCHHHHHHHHHhcCCEEEeCch
Confidence 22223222222222223221 22344555555553210 0011110000 001245666666 5699998873
Q ss_pred -----CcceEEecC-CcHHHHHHHHHHHHHHHhh
Q 011959 446 -----FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 -----~~~~~~~~~-~t~e~i~~~l~~l~~~~~~ 473 (474)
.+++|++++ .+++++.++.++|.+++++
T Consensus 484 ~Fg~~~~~vRis~a~~~~~~~~~~~~rl~~~l~~ 517 (527)
T PRK09275 484 GFGGPEWSVRVSLANLNEEDYAKIGKAIRKLLDE 517 (527)
T ss_pred hhCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 236899987 6889999999999998864
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-22 Score=195.18 Aligned_cols=309 Identities=14% Similarity=0.126 Sum_probs=191.4
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar 176 (474)
+...+|+..|- +++|.. +.+ .+.....| +.....+|.+.++++++ ..++|++++|+++++..+++.
T Consensus 30 ~~~~~~l~~ne--~~~~~~-~~~------~~~~~~~Y--p~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~-- 96 (354)
T PRK04635 30 GRGDIWINANE--SPFNNE-YKL------DLARLNRY--PECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRA-- 96 (354)
T ss_pred CCCcEEeeCCC--CCCCCC-hhh------hhHHhccC--CCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHH--
Confidence 34557877775 555533 322 11122223 33335777777877776 678999999999999999984
Q ss_pred hhc-CC-cEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011959 177 AFT-GR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (474)
Q Consensus 177 ~~~-~~-~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (474)
+. .+ +.|++.+++|..+.. .....|..+..++...... -|++.+++ + +++++|+++.
T Consensus 97 -~~~~g~d~vlv~~P~y~~y~~-~~~~~g~~v~~v~~~~~~~--------------~~~~~l~~-~----~~~~li~i~n 155 (354)
T PRK04635 97 -FCEPGQDSIACFGPTYGMYAI-SAETFNVGVKALPLTADYQ--------------LPLDYIEQ-L----DGAKLVFICN 155 (354)
T ss_pred -hcCCCCCeEEEcCCChHHHHH-HHHHcCCEEEEEecCCCCC--------------CCHHHHHh-c----cCCCEEEEeC
Confidence 43 33 678988888876433 2333444333221110000 15676653 2 2567777777
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEecHH
Q 011959 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRD 330 (474)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~ 330 (474)
++|++|.+.+.++ +++|.+.|+ +++||+||+|..|.... .........++++ ||||.++ +|+|+||++++++
T Consensus 156 P~NPTG~~~~~~~-l~~l~~~~~--~~~vivDeay~~~~~~~-s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~ 231 (354)
T PRK04635 156 PNNPTGTVIDRAD-IEQLIEMTP--DAIVVVDEAYIEFCPEY-SVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEE 231 (354)
T ss_pred CCCCCCccCCHHH-HHHHHHhCC--CcEEEEeCchHhhccCc-chHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHH
Confidence 7888999998444 555555544 59999999998773211 1111112224433 7999999 8999999999999
Q ss_pred HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc--C-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEE
Q 011959 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--E-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (474)
Q Consensus 331 i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (474)
+++.+... ...++.+.+.+.++.++|+... . .+..+.++++++.+.+.|++ ++.....++.|.++++.
T Consensus 232 ~~~~l~~~-----~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~~~~g~f~~~~ 302 (354)
T PRK04635 232 LIEILMRV-----IAPYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSM----YGGAKVLEGNGNYVLAK 302 (354)
T ss_pred HHHHHHhh-----cCCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh----CCCceECCCCCcEEEEE
Confidence 99887631 1245667777777777775210 0 12233344445555555544 33122234567777776
Q ss_pred EecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHH
Q 011959 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~ 470 (474)
+.+ ..++.+.|.++||.+.... .+.+|+++. +++++++++++|++-
T Consensus 303 ~~~----------------~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~~-~~e~~~~l~~al~~~ 352 (354)
T PRK04635 303 FDD----------------VDAVFKALWDAGIVARAYKDPRLANCIRFSFS-NRAETDKLIGLIRNQ 352 (354)
T ss_pred CCC----------------HHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHHh
Confidence 531 1467788889999987653 245788864 789999999999763
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-21 Score=190.70 Aligned_cols=314 Identities=18% Similarity=0.150 Sum_probs=198.7
Q ss_pred CCCCHHHHHHHHHHHHhcC--C--CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhc--CCcEEEE
Q 011959 114 GHADDQVLAALGETMKKGT--S--FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT--GRERIIK 186 (474)
Q Consensus 114 G~~~p~v~~a~~~~~~~~~--~--~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~--~~~~ii~ 186 (474)
.+.+|.+++++.+++.... . +........++++++++.++ ..+.+++++||++|+..+++.++... ++++||+
T Consensus 30 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~ 109 (371)
T PRK13520 30 TEPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVV 109 (371)
T ss_pred cCchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEe
Confidence 3478999999999887521 1 11123444788999999886 34468899999999999998765542 3567877
Q ss_pred EeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCH
Q 011959 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 187 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
.+..+..+ .......|..+..++... .+ ..|+++|++.++. ++++|++...++++|.+.|
T Consensus 110 ~~~~h~s~-~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~---~~~~vi~~~~~~~tG~~~~-- 169 (371)
T PRK13520 110 PESAHFSF-DKAADMLGVELRRAPLDD-DY-------------RVDVKAVEDLIDD---NTIGIVGIAGTTELGQVDP-- 169 (371)
T ss_pred cCcchHHH-HHHHHHcCceEEEecCCC-CC-------------cCCHHHHHHHHhh---CCEEEEEEcCCcCCcccCC--
Confidence 77655442 222223333222211110 00 1279999999974 3455554445567899998
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-c-cCCC---ccccccCCCCceee--hhhhcCCCcceEEEEe-cHHHHHhhcCC
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGF-R-LAYG---GAQEYFGVTPDLTT--LGKIIGGGLPVGAYGG-RRDIMEMVAPA 338 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r-~g~~---~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~-~~~i~~~~~~~ 338 (474)
+++|.++|++||+++|+||+|+++ . .... +..... ..|.++ ..|...+|+|+|+++. ++++++.+...
T Consensus 170 --l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~--~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~ 245 (371)
T PRK13520 170 --IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLP--GVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVD 245 (371)
T ss_pred --HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCC--CCceEEECCccccCccCCceEEEEcCHHHHHhhccc
Confidence 999999999999999999999765 2 1111 111112 235444 3464446789998864 66677766421
Q ss_pred CCcc-------cccCCCCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEE
Q 011959 339 GPMY-------QAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408 (474)
Q Consensus 339 ~~~~-------~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~ 408 (474)
.+.. ..+|. ++..++++.++|+.+.++ +..++..++.+++++.|+++ ++.........++.+.+
T Consensus 246 ~~~~~~~~~~~~~gt~--~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~v~~~~ 319 (371)
T PRK13520 246 TPYLTSKKQATLTGTR--SGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER----GFEPVIEPVLNIVAFDD 319 (371)
T ss_pred CccccCCCCcceEeec--cChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC----CCEEecCCCceEEEEec
Confidence 1111 11222 345577778888876543 36677777777777777654 32211223344555443
Q ss_pred ecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-cceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
. ...++.+.|.++||.+.+... ..+|++ ..+|++|++++++.|++++++
T Consensus 320 ~----------------~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~ 371 (371)
T PRK13520 320 P----------------NPDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVKKR 371 (371)
T ss_pred C----------------CHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhhC
Confidence 2 125788899999999987643 346764 457999999999999988753
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-21 Score=191.49 Aligned_cols=304 Identities=13% Similarity=0.095 Sum_probs=191.8
Q ss_pred CCHHHHHHHHHHHhhCC--C---CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC
Q 011959 137 PCLLENVLAEMVISAVP--S---IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL 211 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~--~---~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~ 211 (474)
..+++..+++++.+..+ . .+++++|+|+++++..+++. ....++.|++.+|+|..+........|..+..++.
T Consensus 46 ~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~--l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~ 123 (388)
T PRK08637 46 IPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADL--FVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPI 123 (388)
T ss_pred CHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHH--hcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecc
Confidence 34666777777665432 1 25789999999999999884 22346788888999877654333344554433222
Q ss_pred C-CCCCCCCCCCCceEEccCCCHHHHHHHHhc-CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH-----hCCEEE
Q 011959 212 P-DSPGVPKGATYETLTAPFNDVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-----NGALLI 284 (474)
Q Consensus 212 ~-~~~g~~~~~~~~~~~~~~~d~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-----~g~llI 284 (474)
. ...++ |++++++.++. ..+...++++..++|++|.+.+.++ +++|.++|++ |+++||
T Consensus 124 ~~~~~~~--------------d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~-~~~l~~~~~~~~~~~~~~~iI 188 (388)
T PRK08637 124 FDEDGGF--------------DTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKE-ATAIVEAIKELADAGTKVVAV 188 (388)
T ss_pred cCCCCcC--------------CHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHH-HHHHHHHHHHHHhcCCcEEEE
Confidence 1 11122 78999888862 1123445555556788998887666 9999999886 999999
Q ss_pred EeccccCc-ccCCCcc--c-cccCCCCce--e---ehhhhcC-CCcceEEEEe------cHHHHHhhcCCC-CcccccCC
Q 011959 285 FDEVMTGF-RLAYGGA--Q-EYFGVTPDL--T---TLGKIIG-GGLPVGAYGG------RRDIMEMVAPAG-PMYQAGTL 347 (474)
Q Consensus 285 ~DEv~~g~-r~g~~~~--~-~~~g~~pdi--~---t~sK~l~-~G~~iG~~~~------~~~i~~~~~~~~-~~~~~~t~ 347 (474)
+||+|.+| ..+.... . ...+...++ + ++||.++ +|+|+||++. ++++++.+.... .......+
T Consensus 189 ~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (388)
T PRK08637 189 VDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNIS 268 (388)
T ss_pred ecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccC
Confidence 99999988 5543211 1 112223342 2 6999877 7999999974 367777664210 01111234
Q ss_pred CCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---HHHhhhc----CCeeEEeeeceeEEEEEecCCCcCccccc
Q 011959 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI---IDAGKKA----GHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (474)
Q Consensus 348 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L---~~~~~~~----~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (474)
+.|.+++.++.+.|+ ++.+.+++++....++++. .+.+..+ ++....+..|.++|+.+..
T Consensus 269 ~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~---------- 335 (388)
T PRK08637 269 NGPHPSQSAVLRALN---SPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG---------- 335 (388)
T ss_pred CCCcHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCCh----------
Confidence 678889998888774 3344444444443343332 2222222 1222223456677776631
Q ss_pred ccchHHHHHHHHHHH-HCCeEecccCCcceEEecC-CcHHHHHHHHHHHHHHHhhC
Q 011959 421 KSETTKFARFYRGML-EEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 421 ~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~~~~~-~t~e~i~~~l~~l~~~~~~~ 474 (474)
....++.+.|+ ++||.+.+.+...+|+++. .+++++++++++|.++++.+
T Consensus 336 ----~~~~~l~~~l~~~~gv~~~~~~~~~iRi~~~~~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 336 ----VDAEELRVHLLEKYGIGTIALNETDLRIAFSCVEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred ----HHHHHHHHHHhhhcceEEEeccCCceEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 12357888886 5799887665567888764 58999999999999998764
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=188.77 Aligned_cols=332 Identities=12% Similarity=0.057 Sum_probs=202.5
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCC--C---C---CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCc
Q 011959 111 AIIGHADDQVLAALGETMKKGTS--F---G---APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 182 (474)
Q Consensus 111 ~~lG~~~p~v~~a~~~~~~~~~~--~---~---~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~ 182 (474)
.-+|..++.+++|+.+....... . . ...+...++.+.+++++ +.+.++|++||++|+..+++.. ..+++
T Consensus 27 ~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~-g~~~~~~~~g~t~a~~~al~~l--~~~gd 103 (387)
T PRK09331 27 QRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFL-GMDEARVTHGAREGKFAVMHSL--CKKGD 103 (387)
T ss_pred hcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHh--cCCCC
Confidence 45777899999999998743111 0 1 12345688888888888 5678999999999999999842 23455
Q ss_pred EEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC----CCCeEEEEEccccCC
Q 011959 183 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN----KGEIAAIILEPVVGN 258 (474)
Q Consensus 183 ~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~----~~~~a~vi~ep~~~~ 258 (474)
+|++...++.+ ....+...|..+..++....++. ..|++++++.++++ .+++++|+++.++++
T Consensus 104 ~Vlv~~~~h~s-~~~~~~~~G~~~~~v~~~~~~~~------------~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~ 170 (387)
T PRK09331 104 YVVLDGLAHYT-SYVAAERAGLNVREVPKTGYPEY------------KITPEAYAEKIEEVKEETGKPPALALLTHVDGN 170 (387)
T ss_pred EEEECCCchHH-HHHHHHHcCCEEEEEeCccCcCC------------CcCHHHHHHHHHHhhhccCCCCEEEEEECCCCC
Confidence 66665444433 33334444443322211000000 12799999988743 236788999888888
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcC
Q 011959 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 337 (474)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~ 337 (474)
+|.+.+ +++|.++|++||++||+|++|+ |.. ......+|+...+.+++|+++++.++|++++++++++.+..
T Consensus 171 tG~~~~----l~~I~~la~~~g~~livD~a~~~g~~---~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~ 243 (387)
T PRK09331 171 YGNLAD----AKKVAKVAHEYGIPFLLNGAYTVGRM---PVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVFR 243 (387)
T ss_pred Cccccc----HHHHHHHHHHcCCEEEEECCcccCCc---CCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhccc
Confidence 999988 9999999999999999999995 210 11222345443445789999977799999999998888754
Q ss_pred CCCcccc-----cCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE--eeeceeEEEEEe
Q 011959 338 AGPMYQA-----GTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICG--GYISGMFGFFFT 409 (474)
Q Consensus 338 ~~~~~~~-----~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v--~~~g~~~~i~~~ 409 (474)
..+.+.. ...+.++....+++++++.+.+ .+.+++..++.+++++.|.++. ++.... .....+..++..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~---g~~~~~~~~~~~~i~~~~~~ 320 (387)
T PRK09331 244 TSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIE---GFKQLGEKPRNHDLMKFETP 320 (387)
T ss_pred ccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CEEEeccCcCcCCeEEEeCC
Confidence 3221110 0111233344555566655443 2344555667777777776641 111110 112223323221
Q ss_pred cCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc-ceEE-ecCCcHHHHHHHHHHHHHHHhh
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFT-SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~~-~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
. . .............+.+.|.++||+..+.+.. .+++ +..+|++++++++++|++++++
T Consensus 321 ~--~---~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 321 S--F---DEIAKKHKRRGFFLYEELKKRGIHGIKPGATKEFKLSTYGLTWEQVEYVADAFKEIAEK 381 (387)
T ss_pred c--h---hHHhhhccccchhHHHHHHHcCceEEccCCceEEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 0 0 0000001112356888999999985433333 3444 4568999999999999998765
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-20 Score=186.00 Aligned_cols=327 Identities=15% Similarity=0.151 Sum_probs=203.4
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CC-CCCC------CHHHHHHHHHHHhhCC-C-CCeEEEeCCHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TS-FGAP------CLLENVLAEMVISAVP-S-IEMVRFVNSGTE 166 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~-~~~~------~~~~~~la~~l~~~~~-~-~~~v~~~~sGse 166 (474)
+..|+|..+. |..++.|++++.+.+... .. .+.. .+...++.+.++++++ . .+.|+|++|+++
T Consensus 16 ~~iyld~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~ 89 (398)
T TIGR03392 16 GTVYLDSAAT------ALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTE 89 (398)
T ss_pred CeEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHH
Confidence 4467775543 446789999998887542 11 1111 1334567788888876 2 578999999999
Q ss_pred HHHHHHHHhH--hhcCCcEEEEEeCCCCCCchhHH---HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHh
Q 011959 167 ACMGVLRLAR--AFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 241 (474)
Q Consensus 167 A~~~al~~ar--~~~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~ 241 (474)
++..++.... ....+++||+.++.|++...... ...|..+..++... .+ .-|++++++.++
T Consensus 90 ~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~-------------~~~~~~l~~~i~ 155 (398)
T TIGR03392 90 SINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGA-DL-------------LPDIRQLPELLT 155 (398)
T ss_pred HHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCC-CC-------------CcCHHHHHHHhc
Confidence 9999988431 12456788888888877433222 22333222211110 00 017899998886
Q ss_pred cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehh--hhcCCC
Q 011959 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGG 319 (474)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~s--K~l~~G 319 (474)
. ++++|++..+++++|.+.+ +++|.++|++||+++|+|++|..... .. +.....+|+.++| |.+|.
T Consensus 156 ~---~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~~~~~--~~--~~~~~~~d~~~~s~~K~~gp- 223 (398)
T TIGR03392 156 P---RTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQGVVHG--PP--DVQALDIDFYAFSGHKLYGP- 223 (398)
T ss_pred c---CceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhhcCCC--CC--ChhhcCCCEEEEecccccCC-
Confidence 3 5778888888888999998 99999999999999999999952211 11 1112346887777 97763
Q ss_pred cceEEEEecHHHHHhhcCCCCc------------------ccccCCCCChHHHHHHHHHHHHhcCC---CHHHHHHHHHH
Q 011959 320 LPVGAYGGRRDIMEMVAPAGPM------------------YQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITG 378 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~~------------------~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~ 378 (474)
..+|++++++++++.+.+.... ..+-.-+.|..++.+..++++.+.+. ...++..++.+
T Consensus 224 ~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~ 303 (398)
T TIGR03392 224 TGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLAD 303 (398)
T ss_pred CceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 2389999999988777531100 00001133455677777888876553 33344444555
Q ss_pred HHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------------C
Q 011959 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------F 446 (474)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------------~ 446 (474)
++++.|.++. ++.........++.+.+... ....+.+.|.++||.+.++. .
T Consensus 304 ~l~~~l~~l~---g~~~~~~~~~~i~~~~~~~~--------------~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~ 366 (398)
T TIGR03392 304 LAEERLAQLP---GFRSFRCPGSSLLAFDFAGV--------------HHSDLAALLAESGIALRAGQHCAQPLMAALGVS 366 (398)
T ss_pred HHHHHHhcCC---CeEEeCCCCCcEEEEEeCCc--------------CHHHHHHHHHhCCEEEecCccchHHHHHHhCCC
Confidence 5555554321 22111112234445444211 12467788889999998653 2
Q ss_pred cceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 447 EAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 447 ~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
..+|++ ...|++|++++++.|++++++
T Consensus 367 ~~iRvS~~~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 367 GTLRASFAPYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred CEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 357775 457999999999999998865
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-22 Score=200.18 Aligned_cols=340 Identities=14% Similarity=0.112 Sum_probs=187.4
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCCC---CHHHHHHH-HHHHhhCC----CCC--eEEEeCCHHHHHHHHHHHhH---hh
Q 011959 112 IIGHADDQVLAALGETMKKGTSFGAP---CLLENVLA-EMVISAVP----SIE--MVRFVNSGTEACMGVLRLAR---AF 178 (474)
Q Consensus 112 ~lG~~~p~v~~a~~~~~~~~~~~~~~---~~~~~~la-~~l~~~~~----~~~--~v~~~~sGseA~~~al~~ar---~~ 178 (474)
..+..+|++++++.+.+. +..|..+ .++.++++ +.+.+.+. ..+ +|++|+|+++|+..++.... ..
T Consensus 103 ~p~~~~~~~~~~~~~~~~-~~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll 181 (521)
T TIGR03801 103 QLGFDPDAFLYEMCDGII-GDNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELL 181 (521)
T ss_pred CCCCCCCHHHHHHHHHhh-cCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcC
Confidence 345556677777777653 2234222 23444555 34444322 223 89999999999999887421 23
Q ss_pred cCCcEEEEEeCCCCCCchhHHHhc--CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 179 TGRERIIKFEGCYHGHADPFLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~--g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
.++++|++.+|+|..+.... ... |..+..++.....+ .....+.+ |.+++++++. +++++|+++.++
T Consensus 182 ~pGD~Vlv~~P~y~~y~~~~-~l~~~g~~vv~i~~~~~~~------~g~~~~~~-d~~~l~~~~~---~~~kai~l~nP~ 250 (521)
T TIGR03801 182 KKGDKIALMTPIFTPYLEIP-ELPRYDFEVVRIKADEMTE------DGTHTWQY-PDKELEKLRD---PSIKALFVVNPS 250 (521)
T ss_pred CCCCEEEEeCCCcHHHHHHH-HHhcCCcEEEEeecccccc------cccccCCC-CHHHHHHhcC---CCCcEEEEeCCC
Confidence 45788999999998754332 232 22222211110000 00000111 6788887664 256777765556
Q ss_pred CCCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccCcccCCCccccccCCCC-ce---eehhhhcC-CCcceEEEEecH
Q 011959 257 GNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGFRLAYGGAQEYFGVTP-DL---TTLGKIIG-GGLPVGAYGGRR 329 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~r~g~~~~~~~~g~~p-di---~t~sK~l~-~G~~iG~~~~~~ 329 (474)
|++|.+.+.++ +++|.++|++| +++||+||+|..|...... .....| .+ .+|||.++ +|||+||+++++
T Consensus 251 NPTG~vls~e~-l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s---l~~~~~~~vI~v~SfSK~fg~~G~RlG~i~~~~ 326 (521)
T TIGR03801 251 NPPSVAMSDES-IEKIVDIVANDRPDLMILTDDVYGTFVDDFRS---LFAELPYNTIGVYSFSKYFGATGWRLGTIALHK 326 (521)
T ss_pred CCCCCCCCHHH-HHHHHHHHHhcCCCeEEEECCCchhhcccccc---hhhhCCCCEEEEEcchhhccCchhhhhhhhcCc
Confidence 88888887666 99999999987 9999999999877211111 111223 22 37999998 899999998875
Q ss_pred H-H----H--------HhhcC---------------------CCCcccccCCCCChHHHH-----HHHHHHHHhcCCCHH
Q 011959 330 D-I----M--------EMVAP---------------------AGPMYQAGTLSGNPLAMT-----AGIHTLKRLKEPGTY 370 (474)
Q Consensus 330 ~-i----~--------~~~~~---------------------~~~~~~~~t~~~~~~~~a-----aa~aal~~~~~~~~~ 370 (474)
+ + + +.+.+ ........|.+.+.+.|. ++.+.++. .+.+.
T Consensus 327 ~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~--~~~y~ 404 (521)
T TIGR03801 327 DNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDK--ENAYK 404 (521)
T ss_pred hHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcc--chhHH
Confidence 4 2 2 11110 001223345555555554 23333321 12333
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCee--EEeeeceeEEEEEecCCC----cCcccccccchHHHHHHHHHHH-HCCeEecc
Q 011959 371 EYLNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGFFFTEGPV----YNFEDAKKSETTKFARFYRGML-EEGVYFAP 443 (474)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~--~v~~~g~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~ 443 (474)
+..+ +.++++...+....++.. ..+..|.++++++..-.. ..|........ ...+++..|+ +.||.+.|
T Consensus 405 ~~~~---~~~~~R~~~l~~~Lg~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~-~~~~~~~~L~~e~gV~v~P 480 (521)
T TIGR03801 405 AETK---DICRRREKLLFRGLGLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNY-SPVDVLFRLAEETGIVLLP 480 (521)
T ss_pred HHHH---HHHHHHHHHHHHhcCCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccC-CHHHHHHHHHHhCCEEEeC
Confidence 3322 223222222222223221 223445666666642100 01111100000 1245666666 66999998
Q ss_pred cC-----CcceEEecC-CcHHHHHHHHHHHHHHHhh
Q 011959 444 SQ-----FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 444 ~~-----~~~~~~~~~-~t~e~i~~~l~~l~~~~~~ 473 (474)
+. .+++|++++ .+++++.++.++|.+++++
T Consensus 481 G~~Fg~~~~~vRisla~l~~~~~~~~~~rl~~~~~~ 516 (521)
T TIGR03801 481 GGGFGGPEWSVRVSLANLNEYDYAEIGRAIRKILDE 516 (521)
T ss_pred chhcCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 73 235889887 7999999999999998864
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-20 Score=184.79 Aligned_cols=318 Identities=17% Similarity=0.194 Sum_probs=200.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CC--CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCC
Q 011959 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~--~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (474)
.+|.|.+++........ ....+...++.+.++++++ .. ..++++.||+++++.++.. ...+++++|+.+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~--~~~~~~~vi~~~~~~~ 85 (355)
T TIGR03301 10 TSATVRDAMLVDWCHWD--SEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGS--LVPRDGKLLVLINGAY 85 (355)
T ss_pred CCHHHHHHhhhhccCCC--HHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHh--ccCCCCeEEEECCCch
Confidence 35777777766322110 0113667788888888875 22 2678899999999999985 2345678888888877
Q ss_pred CCch-hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHH
Q 011959 193 GHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (474)
Q Consensus 193 g~~~-~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (474)
+... ......|..+..++.+... ..|++++++.+++++ ++..+++..+++.+|.+.+ +++
T Consensus 86 ~~~~~~~a~~~g~~~~~i~~~~~~--------------~~d~~~l~~~l~~~~-~~~~v~~~~~~~~~G~~~~----~~~ 146 (355)
T TIGR03301 86 GERLAKICEYLGIPHTDLNFSEYE--------------PPDLNRIEEALAADP-DITHVATVHHETTTGILNP----LEA 146 (355)
T ss_pred hhHHHHHHHHcCCceEEEecCCCC--------------CCCHHHHHHHHHhCC-CceEEEEEecCCcccchhH----HHH
Confidence 7532 2222334332221111101 117999999997643 4555555555566888888 899
Q ss_pred HHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcc---------
Q 011959 272 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY--------- 342 (474)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~--------- 342 (474)
|.++|++||+++|+|++++ +. +..+....+++..-+.+++|+++++..+|++++++++++.+......+
T Consensus 147 i~~l~~~~~~~livD~~~s-~g-~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (355)
T TIGR03301 147 IAKVARSHGAVLIVDAMSS-FG-AIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWA 224 (355)
T ss_pred HHHHHHHcCCEEEEEeccc-cC-CcccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHH
Confidence 9999999999999999885 21 112222333333333479999875555899999999988876211110
Q ss_pred -----cccCCCCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCeeE-EeeeceeEEEEEecCC
Q 011959 343 -----QAGTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGP 412 (474)
Q Consensus 343 -----~~~t~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g~~~~i~~~~~~ 412 (474)
....++.+..++.++.++++.+.++ +..++++++.+++++.|++...+ +... ....+.++++.+...+
T Consensus 225 ~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~--~~~~~~~~~~~~~~~~~~~~~ 302 (355)
T TIGR03301 225 YMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQ--PLLPERWQSPIIVSFLYPDDP 302 (355)
T ss_pred HhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCe--eecCCCCCCCcEEEEECCCCC
Confidence 0123456777778888888876543 34556677777777777654211 1111 1123444555543210
Q ss_pred CcCcccccccchHHHHHHHHHHHHCCeEecccCC---cceEEec--CCcHHHHHHHHHHHHHHH
Q 011959 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAGFTSL--AHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~~~~--~~t~e~i~~~l~~l~~~~ 471 (474)
.....++.+.|.++||.+.++.. +.+|++. .+++++++++++.|++++
T Consensus 303 -----------~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 303 -----------DFDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred -----------cchHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 01235788999999999988742 4678853 459999999999998763
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-20 Score=172.96 Aligned_cols=321 Identities=15% Similarity=0.130 Sum_probs=201.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEE
Q 011959 116 ADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF 187 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~ 187 (474)
..++..+|+.+++..+...+| ....+.++|+.+.+..+ ..++|++|.|.++|++.++.. ....+..|++.
T Consensus 79 ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~--LA~p~aNILlP 156 (447)
T KOG0259|consen 79 TSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISS--LANPGANILLP 156 (447)
T ss_pred CCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHH--hcCCCCceecC
Confidence 578899999999988654433 34567788888777666 478999999999999999984 23456788888
Q ss_pred eCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCH
Q 011959 188 EGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 188 ~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
.|+|.-+ +....-.+..+....+ |.. -+.+ |++.+|.++.++ .++.||++|. |+.|.+. +.
T Consensus 157 rPGfp~Y-~~~a~~~~lEVR~ydlLPe~----------~weI---DL~~veal~DEN--T~AivviNP~-NPcGnVy-s~ 218 (447)
T KOG0259|consen 157 RPGFPLY-DTRAIYSGLEVRYYDLLPEK----------DWEI---DLDGVEALADEN--TVAIVVINPN-NPCGNVY-SE 218 (447)
T ss_pred CCCCchH-HHhhhhcCceeEeecccCcc----------ccee---chHHHHHhhccC--eeEEEEeCCC-CCCcccc-cH
Confidence 8888542 2222222333322211 111 1112 899999999864 4555555655 4555555 45
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-ccccc-CCCCcee--ehhhhcC-CCcceEEEEecHH--------HH
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF-GVTPDLT--TLGKIIG-GGLPVGAYGGRRD--------IM 332 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~-g~~pdi~--t~sK~l~-~G~~iG~~~~~~~--------i~ 332 (474)
+-|++|.++|+|+|+++|.||||..+ ..+..| ....| .+.|-++ .+||..- .|||+||++.... ++
T Consensus 219 ~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~ 298 (447)
T KOG0259|consen 219 DHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVV 298 (447)
T ss_pred HHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEecccccccchHHH
Confidence 56999999999999999999999877 555443 33333 3456444 4789766 8999999976432 22
Q ss_pred HhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHH----HHHHHHHHHHHHHHHhhhcCCee-EEeeeceeEEE-
Q 011959 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY----LNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGF- 406 (474)
Q Consensus 333 ~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~~~i- 406 (474)
+.+. .+. .-+.+.+.+.|+|.-.-|+.-. +++.++ ++.+.+...++|. +.|... .+++.|.|+.+
T Consensus 299 q~~~---~~~-~~~~~p~TiiQ~AlP~IL~kTp-~efF~k~~~~lk~na~l~y~~Lk----~IP~l~cp~kPeg~mylmv 369 (447)
T KOG0259|consen 299 QGIK---NFL-DIIPGPATIIQGALPDILEKTP-EEFFDKKLSFLKSNADLCYSRLK----DIPCLTCPVKPEGCMYLMV 369 (447)
T ss_pred HHHH---HHH-hccCCccHhHHHHhHHHHHhCh-HHHHHHHHHHHHhhHHHHHHHHh----cCCCcccCcCCCcceEEEe
Confidence 3332 111 1233445555555444444221 333333 3344444444444 445443 56777776543
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+.-. .+ ++-..-..|++.|. |+.+++-|+. .+++|+.++...+.+++++++|+++..+
T Consensus 370 ~l~~s---~~-----~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~~~~~leea~~Rik~Fc~R 433 (447)
T KOG0259|consen 370 KLNLS---LF-----PDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITVEEEMLEEAFSRIKEFCDR 433 (447)
T ss_pred ccchh---hh-----ccccccHHHHHHHhhhcceEEeccccccCCCeEEEEEccChHHHHHHHHHHHHHHHh
Confidence 33211 11 11122245666665 7789988873 4578999999999999999999998754
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=183.85 Aligned_cols=326 Identities=20% Similarity=0.228 Sum_probs=222.4
Q ss_pred cCCCE--EEeccCChhhccCCC--CCHHHHHHHHHHHHh-cCCC------CCCCHHHHHHHHHHHhhCCCCCeEEEeCCH
Q 011959 96 IDGNE--YIDYVGSWGPAIIGH--ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVISAVPSIEMVRFVNSG 164 (474)
Q Consensus 96 ~dG~~--~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~-~~~~------~~~~~~~~~la~~l~~~~~~~~~v~~~~sG 164 (474)
..|++ .|++.+- |+||. ++-...++..+.+++ +... -+..+...++.+.++++. +.+..+..+-|
T Consensus 131 ~tG~~~~~lNlgSY---NYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~-g~e~a~vF~mG 206 (519)
T KOG1357|consen 131 YTGTRSRCLNLGSY---NYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFL-GVEDAIVFSMG 206 (519)
T ss_pred eccceeeeeeeccc---ccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhc-CCcceEEEecc
Confidence 34554 4555444 88887 344444455555554 2111 135677788888888888 55666666668
Q ss_pred HHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhc--
Q 011959 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN-- 242 (474)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~-- 242 (474)
...|...+. .+.++...|+.+.-.|++..... +..++++..+.|||+++||++|++
T Consensus 207 f~TNs~~~p---~l~~~gsLIiSDelNHaSi~~Ga-------------------RLSgAtiRVfkHNdm~~LEr~Lrd~I 264 (519)
T KOG1357|consen 207 FATNSMNIP---SLLGKGSLIISDELNHASLITGA-------------------RLSGATTRVFRHNDMQGLERLLRDAI 264 (519)
T ss_pred ccccccCcc---eeecCCcceeeccccchheeccc-------------------cccCceEEEEecCCHHHHHHHHHHHH
Confidence 888877777 66788888888888998643222 344557889999999999999974
Q ss_pred -------C-CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCC---ce
Q 011959 243 -------N-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTP---DL 309 (474)
Q Consensus 243 -------~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~p---di 309 (474)
+ +.+...|++|.+.++.|.+.. |.++.++++||.++|+.||+| .|. .....+..+++|+.| ||
T Consensus 265 ~~gqP~Thrp~kki~iivegiysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDI 340 (519)
T KOG1357|consen 265 VYGQPKTHRPWKKILICVEGIYSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDI 340 (519)
T ss_pred hcCCCCcCCcchheeeeeccceeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhhee
Confidence 2 335568888999999999999 888999999999999999999 455 344567888999876 44
Q ss_pred e--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHH
Q 011959 310 T--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-------PGTYEYLNKITGEL 380 (474)
Q Consensus 310 ~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-------~~~~~~~~~~~~~l 380 (474)
+ ||.|+++++ -|++.+++++++.++.........| +.+|+.+.-.+..++.+.- ....+++.++..++
T Consensus 341 mMGtftKSfga~--GGyiagsk~lid~lrt~s~~~~yat-~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yf 417 (519)
T KOG1357|consen 341 MMGTFTKSFGAA--GGYIAGSKELIDYLRTPSPSALYAT-SLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYF 417 (519)
T ss_pred ecceehhhcccc--cceecCcHHHHhhhccCCCceeecc-cCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHH
Confidence 4 899999952 5777899999999985433323333 3455566666777887753 24566777788888
Q ss_pred HHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcc---------eEE
Q 011959 381 TQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---------GFT 451 (474)
Q Consensus 381 ~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~---------~~~ 451 (474)
+..|+..+ |.+..+..++..+...-...+...+.+.|+++++-+...+++. +++
T Consensus 418 r~~l~~~g-----------------fivyG~~dSpVvplll~~~~k~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~ 480 (519)
T KOG1357|consen 418 RWELQKMG-----------------FIVYGNNDSPVVPLLLYGPAKIVAFSREMLERNIGVVVVGFPATPLLESRARFCL 480 (519)
T ss_pred HHhhhcCc-----------------EEEecCCCCCcceeeecCcccccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhh
Confidence 88777642 2222111111111111122334578889999977665555442 345
Q ss_pred ecCCcHHHHHHHHHHHHHHH
Q 011959 452 SLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 452 ~~~~t~e~i~~~l~~l~~~~ 471 (474)
+..||.|+++++++.++++-
T Consensus 481 Sa~ht~e~ld~~l~~i~~~g 500 (519)
T KOG1357|consen 481 SASHTKEDLDRALEVIDRVG 500 (519)
T ss_pred cccccHHHHHHHHHHHhhhc
Confidence 78999999999999998764
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-20 Score=187.51 Aligned_cols=333 Identities=14% Similarity=0.042 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhH
Q 011959 119 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 198 (474)
Q Consensus 119 ~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~ 198 (474)
.+.+++.+++..+...+.......+|.+.+++++ +.+.+++++||++|+..+++ ++.++++||..++.|..+ ...
T Consensus 58 a~~~a~~~a~~~g~~~Y~~~~g~~~Lreaia~~~-~~~~vv~t~ggt~A~~~~~~---all~pGDVii~~p~~~~~-~~~ 132 (460)
T PRK13238 58 AMSDRQWAAMMRGDEAYAGSRSYYRLEDAVKDIF-GYPYTIPTHQGRAAEQILFP---VLIKKGDVVPSNYHFDTT-RAH 132 (460)
T ss_pred hhhHHHHHHHHhCCcccCCCCCHHHHHHHHHHHh-CCCcEEECCCHHHHHHHHHH---HhCCCCCEEccCCcccch-HHH
Confidence 5788888887665432233444566667777766 56789999999999999987 344444477766655543 344
Q ss_pred HHhcCCCCccCCCCCCCCCCCCCCCceEEccC-CCHHHHHHHHhcCC-CCeEEEEEccccCCCCcccCCHHHHHHHHHHH
Q 011959 199 LVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 199 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
+...|..+...+....... . . ...+.. -|++.|++.+.+++ +++++|+++.++|++|..+.+.+.+++|+++|
T Consensus 133 i~~~G~~~v~v~~~~~~~~-~--~--~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia 207 (460)
T PRK13238 133 IELNGATAVDLVIDEALDT-G--S--RHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIA 207 (460)
T ss_pred HHHcCCEEEEEeccccccc-c--c--cccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHH
Confidence 4444543322211100000 0 0 000111 18999999998543 46899999888887664444455599999999
Q ss_pred HHhCCEEEEeccccC--c-cc-----CCCc-ccc-c---cCCCCceeehh--hhcCCCcceEEE-Eec-HHHHHhhcCCC
Q 011959 277 KENGALLIFDEVMTG--F-RL-----AYGG-AQE-Y---FGVTPDLTTLG--KIIGGGLPVGAY-GGR-RDIMEMVAPAG 339 (474)
Q Consensus 277 ~~~g~llI~DEv~~g--~-r~-----g~~~-~~~-~---~g~~pdi~t~s--K~l~~G~~iG~~-~~~-~~i~~~~~~~~ 339 (474)
++||++||+|+++.. . .. +... ... . .+-..|+.++| |.+.+ +.|++ +++ +++++.++...
T Consensus 208 ~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~--~~GG~i~~~d~~l~~~~~~~~ 285 (460)
T PRK13238 208 KKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMV--NIGGLLCFRDEDLFTECRTLC 285 (460)
T ss_pred HHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCC--cceeEEEcChHHHHHHhhhcc
Confidence 999999999997741 1 11 1000 000 0 00113444433 21111 33444 556 57888776432
Q ss_pred Cccc-ccCCCCChHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcc
Q 011959 340 PMYQ-AGTLSGNPLA-MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 417 (474)
Q Consensus 340 ~~~~-~~t~~~~~~~-~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~ 417 (474)
...+ ..|+++++.. ++|...+|+...+++..+...++.++|.+.|++. ++....+..|.++.+++..- .
T Consensus 286 ~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~----G~~~~~p~Gg~~v~~d~~~~-----~ 356 (460)
T PRK13238 286 ILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA----GVPIQTPAGGHAVFVDAGKF-----L 356 (460)
T ss_pred cccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC----CCCeEccCCceEEEEEchhc-----C
Confidence 2222 3488887666 4444446665444566666666678888888763 44444445565555555321 0
Q ss_pred cccccchHHHHHHHHHHH-HCCeEecccC-----------------CcceEEecCC---cHHHHHHHHHHHHHHHh
Q 011959 418 DAKKSETTKFARFYRGML-EEGVYFAPSQ-----------------FEAGFTSLAH---SSDDIQHTITAAEKVLR 472 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-----------------~~~~~~~~~~---t~e~i~~~l~~l~~~~~ 472 (474)
+...........++..|+ +.||.+.|.+ ...+|+.+.- |++++|.+.++|+++.+
T Consensus 357 ~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 357 PHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKE 432 (460)
T ss_pred CCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 000000001245665555 6799887753 1345665545 99999999999998764
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=192.94 Aligned_cols=245 Identities=16% Similarity=0.151 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHhHhh-cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCC
Q 011959 138 CLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAF-TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 213 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~al~~ar~~-~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~ 213 (474)
.++++++++++.+.++ ..++|++|+|+++++..+++. .. ..++.|++.+++|..+... +...|..+..++...
T Consensus 110 ~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~--l~~~pGd~Vli~~P~Y~~y~~~-~~~~g~~~v~v~~~~ 186 (407)
T PLN02368 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNA--VIRGEKDGVLVPVPQYPLYSAT-ISLLGGTLVPYYLEE 186 (407)
T ss_pred HHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHH--HcCCCCCEEEEeCCCCccHHHH-HHHcCCEEEEEeccc
Confidence 4778888888877654 568999999999999999884 22 3578899999999886543 334444332222111
Q ss_pred CCCCCCCCCCceEEccCCCHHHHHHHHhcC---CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 011959 214 SPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290 (474)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (474)
..++ . -|+++|++.++.. ..+++++++..++|++|.+.+.++ +++|.++|++||++||+||+|.
T Consensus 187 ~~~~---------~---~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~-l~~l~~~a~~~~~~II~DE~Y~ 253 (407)
T PLN02368 187 SENW---------G---LDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN-LREILKFCYQERLVLLGDEVYQ 253 (407)
T ss_pred ccCC---------C---CCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHH-HHHHHHHHHHcCCEEEEEcccc
Confidence 1010 0 1789999988632 114665565555788998887666 9999999999999999999998
Q ss_pred Cc-ccCC-Cc-c-cccc-CC------CCcee---ehhhhc-C-CCcceEEEE---ecHHHHHhhcCCCCcccccCCCCCh
Q 011959 291 GF-RLAY-GG-A-QEYF-GV------TPDLT---TLGKII-G-GGLPVGAYG---GRRDIMEMVAPAGPMYQAGTLSGNP 351 (474)
Q Consensus 291 g~-r~g~-~~-~-~~~~-g~------~pdi~---t~sK~l-~-~G~~iG~~~---~~~~i~~~~~~~~~~~~~~t~~~~~ 351 (474)
.| ..+. .+ . .+.. ++ .+.++ +|||++ + +|||+||++ +++++++.+.. . ...+++.|.
T Consensus 254 ~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~---~-~~~~~~~~~ 329 (407)
T PLN02368 254 QNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYK---V-ASIALSPNV 329 (407)
T ss_pred ccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHH---H-hcccCCCCc
Confidence 88 5442 21 1 1111 11 12333 689999 5 899999998 58889888873 2 123567888
Q ss_pred HHHHHHHHHHHHhc-----------C-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEE
Q 011959 352 LAMTAGIHTLKRLK-----------E-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (474)
Q Consensus 352 ~~~aaa~aal~~~~-----------~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (474)
+++.++.++|+.-+ + ..+.+.++++++.+.+.|+++ +........|.|+.+
T Consensus 330 ~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~----~g~~~~~P~Gafy~~ 392 (407)
T PLN02368 330 SGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSC----KNVVCNFTEGAMYSF 392 (407)
T ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCeEeCCCCeeeEec
Confidence 99999998885321 0 123445555666666666543 223334455555443
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-19 Score=181.44 Aligned_cols=326 Identities=15% Similarity=0.163 Sum_probs=204.3
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC---CC------CCHHHHHHHHHHHhhCC--CCCeEEEeCCHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GA------PCLLENVLAEMVISAVP--SIEMVRFVNSGTE 166 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~------~~~~~~~la~~l~~~~~--~~~~v~~~~sGse 166 (474)
+.-|+|-.+. |..++.+.+++.+.+...... +. ..+...++.+.++++++ ..+.|+|++|+++
T Consensus 19 ~~~yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~ 92 (401)
T PRK10874 19 AGVYLDSAAT------ALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTE 92 (401)
T ss_pred ceEEEeCCcc------cCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHH
Confidence 3467775543 446789999998888652111 11 12345677788888886 3578999999999
Q ss_pred HHHHHHHHhH--hhcCCcEEEEEeCCCCCCchhHH---HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHh
Q 011959 167 ACMGVLRLAR--AFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 241 (474)
Q Consensus 167 A~~~al~~ar--~~~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~ 241 (474)
++..+++... ...++++||+.++.|++...... ...|..+..++... .+ ..|++++++.++
T Consensus 93 ~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~-------------~~d~~~l~~~i~ 158 (401)
T PRK10874 93 SINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA-DR-------------LPDVDLLPELIT 158 (401)
T ss_pred HHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC-CC-------------cCCHHHHHHhcC
Confidence 9999988431 12456789998888877432222 22343322211110 00 117899999886
Q ss_pred cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccCCCccccccCCCCceee--hhhhcCC
Q 011959 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTT--LGKIIGG 318 (474)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pdi~t--~sK~l~~ 318 (474)
. ++++|++..+++++|.+.| +++|.++|++||+++|+|++|. |.. ..... ...+|+++ ++|.+|.
T Consensus 159 ~---~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~~g~~---~~~~~--~~~~d~~~~s~~K~~gp 226 (401)
T PRK10874 159 P---RTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQGAVHF---PADVQ--ALDIDFYAFSGHKLYGP 226 (401)
T ss_pred c---CcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCcccccc---cCCch--hcCCCEEEEecccccCC
Confidence 3 5778888888889999998 9999999999999999999995 211 11112 23467664 5597762
Q ss_pred CcceEEEEecHHHHHhhcCCC---Cc---------------ccccCCCCChHHHHHHHHHHHHhcCC---CHHHHHHHHH
Q 011959 319 GLPVGAYGGRRDIMEMVAPAG---PM---------------YQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKIT 377 (474)
Q Consensus 319 G~~iG~~~~~~~i~~~~~~~~---~~---------------~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~ 377 (474)
..+|++++++++++.+.+.. .. ..+...+.|..++.+..++++.+.+. ...++.+++.
T Consensus 227 -~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~ 305 (401)
T PRK10874 227 -TGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLA 305 (401)
T ss_pred -CccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 13799999999888765310 00 00011133556777777778776543 2344555555
Q ss_pred HHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------------
Q 011959 378 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------ 445 (474)
Q Consensus 378 ~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------------ 445 (474)
+++++.|+++. ++.......+.++.+.+... ...++.+.|.++||.+.++.
T Consensus 306 ~~l~~~l~~~~---g~~~~~~~~~~i~~~~~~~~--------------~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~ 368 (401)
T PRK10874 306 TLAEDALAKLP---GFRSFRCQDSSLLAFDFAGV--------------HHSDLVTLLAEYGIALRAGQHCAQPLLAALGV 368 (401)
T ss_pred HHHHHHHhcCC---CEEEeCCCCCcEEEEEECCc--------------CHHHHHHHHHHCCcEEeccccchHHHHHHhCC
Confidence 55555554421 22111122344555554210 12567788889999988743
Q ss_pred CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 446 FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 ~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
...+|++ ...|++|++++++.|+++++.
T Consensus 369 ~~~iRiS~~~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 369 TGTLRASFAPYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred CCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 2356775 345999999999999998765
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=174.93 Aligned_cols=378 Identities=19% Similarity=0.224 Sum_probs=256.0
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHhc
Q 011959 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG 131 (474)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~ 131 (474)
.++.-+...+|.|...-.+.-.-.+. ..+.+++..-+..++ +||+.+++|.+. |+||. .++++.+.+...+.+.
T Consensus 50 ~~eideLiedw~PEPLV~~~~~~~~~-~~~~v~e~~~~~~~~-i~G~~~~N~aS~---NfL~l~~~~~ike~a~~~lrky 124 (467)
T KOG1358|consen 50 EQEIDELIEDWEPEPLVPPVPEDHPV-LNTPVLESVMLPHVT-IDGKDVLNFASA---NFLGLIENEEIKEEASFTLRKY 124 (467)
T ss_pred HHHHHHHHhcCCCCCCCCCCcccccc-cCCcccccccCCceE-ecCceeecccch---hhhhhcccHHHHHHHHHHHHHh
Confidence 46677777888888765543211111 124557777788777 999999999998 99998 5999999999999882
Q ss_pred -C------CCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCC
Q 011959 132 -T------SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS 204 (474)
Q Consensus 132 -~------~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~ 204 (474)
. +|.+..+...+|.+.+++.+ +.+..++.+-|..++..++. +++++++||..+..-+-.....+.
T Consensus 125 GvGsCGPrGFYGt~DvHldlE~~iakF~-G~E~aivYs~gF~ti~S~ip---afsKrGDIi~~de~~nfaIq~Glq---- 196 (467)
T KOG1358|consen 125 GVGSCGPRGFYGTIDVHLDLEKRIAKFM-GTEDAIVYSYGFSTIESAIP---AFSKRGDIIFVDEAVNFAIQKGLQ---- 196 (467)
T ss_pred CCCCcCCCcccccceeecccHHHHHHhh-CCcceeeeccccchhhhcch---hhhccCcEEEEehhhhHHHHHHHh----
Confidence 2 23344555566667777666 55555555668999999999 899999999987654332211111
Q ss_pred CCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC-------C---CeEEEEEccccCCCCcccCCHHHHHHHHH
Q 011959 205 GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-------G---EIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (474)
Q Consensus 205 ~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~-------~---~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (474)
.....+..|.|||++++|+++.+.. . ..+-|++|..+.|+|.+.| +++|.+
T Consensus 197 ---------------lSRS~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p----l~~iv~ 257 (467)
T KOG1358|consen 197 ---------------LSRSTISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP----LPEIVK 257 (467)
T ss_pred ---------------hhhheeEEecCCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc----cHHHHH
Confidence 1233578899999999998876421 1 1457888999999999999 999999
Q ss_pred HHHHhCCEEEEeccc-cCc-ccCCCccccccCCCC---ceee--hhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCC
Q 011959 275 ITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTP---DLTT--LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 347 (474)
Q Consensus 275 l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~p---di~t--~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~ 347 (474)
+..||...+|.||.+ .|. ...+.+..+|+++.+ |+++ ++-++++| -|+++|+.-+.++-+-.+..+.+ +-
T Consensus 258 lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~--GgFc~G~~~i~~hQrLSg~~Y~f-SA 334 (467)
T KOG1358|consen 258 LKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASG--GGFCAGKSFIADHQRLSGSGYCF-SA 334 (467)
T ss_pred HHhhheEEEEEecccccccccccCccccccCCCCccceeeeeeccccccccc--CceeecceeeEeeeeccccceee-ec
Confidence 999999999999999 455 322356779999863 5665 44566632 45667765555443322333333 34
Q ss_pred CCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHH
Q 011959 348 SGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 426 (474)
Q Consensus 348 ~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 426 (474)
+.+|....||..++.++++ ++..+.++.....+...|+.. .++...-.....++.+.+.....+ ...+...
T Consensus 335 slPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~~---s~~~v~~~~~SPi~hl~l~~~~~s-----~e~e~~l 406 (467)
T KOG1358|consen 335 SLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSSN---SGFIVSGSPESPIIHLQLERSYGS-----REKEEKL 406 (467)
T ss_pred cCchhhhhhHHHHHHHHhhCcchhhhhhccccccchhhhcC---CceEEecCcCCceeeeeecccccc-----hHHHHHH
Confidence 6788888999999998877 677778888777777777652 122222222344444444332110 0112344
Q ss_pred HHHHHHHHHHCCeEecccC----------CcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 427 FARFYRGMLEEGVYFAPSQ----------FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 427 ~~~~~~~l~~~Gv~v~~~~----------~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+++++.++.+|+++.... .+.+++ +..+++|||+++.+.++++...
T Consensus 407 L~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 407 LEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVASA 465 (467)
T ss_pred HHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 5778888887798876542 123444 6788999999999999987654
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=184.52 Aligned_cols=313 Identities=16% Similarity=0.151 Sum_probs=196.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHhhCCC-C-CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCC
Q 011959 116 ADDQVLAALGETMKKGTSFGA--PCLLENVLAEMVISAVPS-I-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 191 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~--~~~~~~~la~~l~~~~~~-~-~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (474)
.+++|.+++.+.+.. +.+ ..+...++.+.+++.++. . +.+++++||++|+..+++.. ...++.|++.++++
T Consensus 10 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~--~~~g~~vl~~~~~~ 84 (356)
T cd06451 10 VPPRVLKAMNRPMLG---HRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNL--LEPGDKVLVGVNGV 84 (356)
T ss_pred CCHHHHHHhCCCccC---CCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHh--CCCCCEEEEecCCc
Confidence 467777777544321 222 234467888889888862 3 45789999999999999842 34567788877766
Q ss_pred CCCc-hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHH
Q 011959 192 HGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (474)
Q Consensus 192 hg~~-~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (474)
++.. .......|..+...+.... ...|++++++.++++ ++++|++..+++++|.+.+ ++
T Consensus 85 ~~~~~~~~~~~~g~~~~~v~~~~~--------------~~~~~~~l~~~i~~~--~~~~v~i~~~~~~~G~~~~----~~ 144 (356)
T cd06451 85 FGDRWADMAERYGADVDVVEKPWG--------------EAVSPEEIAEALEQH--DIKAVTLTHNETSTGVLNP----LE 144 (356)
T ss_pred hhHHHHHHHHHhCCCeEEeecCCC--------------CCCCHHHHHHHHhcc--CCCEEEEeccCCCcccccC----HH
Confidence 6532 2223333433222111000 012799999998742 5677777777788999988 99
Q ss_pred HHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcC--CCCcc----
Q 011959 271 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMY---- 342 (474)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~--~~~~~---- 342 (474)
+|.++|++||+++|+|++|. +. +.......++ .|++ +++|.++++.++|+++.++++++.+.. .....
T Consensus 145 ~i~~~a~~~~~~li~D~~~~-~g-~~~~~~~~~~--~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~ 220 (356)
T cd06451 145 GIGALAKKHDALLIVDAVSS-LG-GEPFRMDEWG--VDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDL 220 (356)
T ss_pred HHHHHHHhcCCEEEEeeehh-cc-CccccccccC--ccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecH
Confidence 99999999999999999984 20 0111122223 4555 568999976679999999998877652 10000
Q ss_pred -------c---ccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee-eceeEEEEE
Q 011959 343 -------Q---AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFF 408 (474)
Q Consensus 343 -------~---~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~ 408 (474)
. ....+.++..+.++.++++.+.. +...++.+++.+++++.|++... .+...... .+.++++.+
T Consensus 221 ~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~--~~~~~~~~~~~~~~~~~~ 298 (356)
T cd06451 221 LLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGL--KLLAKPELRSPTVTAVLV 298 (356)
T ss_pred HHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCC--eeccCcccCCCceEEEEC
Confidence 0 11223455556777788877654 34566777777778887776421 11111111 122223332
Q ss_pred ecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEec--CCcHHHHHHHHHHHHHHHh
Q 011959 409 TEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL--AHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~~--~~t~e~i~~~l~~l~~~~~ 472 (474)
.. ......+++.|.++ ||.+.++. ...+|+++ .+|+||+++++++|+++++
T Consensus 299 ~~-------------~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 299 PE-------------GVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred CC-------------CCCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 11 11235788999998 99998653 23567754 5799999999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=179.85 Aligned_cols=314 Identities=16% Similarity=0.116 Sum_probs=194.1
Q ss_pred CCCCHHHHHHHHHHHHhc-CCCC-C------CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHh-hcCCcE
Q 011959 114 GHADDQVLAALGETMKKG-TSFG-A------PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA-FTGRER 183 (474)
Q Consensus 114 G~~~p~v~~a~~~~~~~~-~~~~-~------~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~-~~~~~~ 183 (474)
|..++.+++++.+.++.. ...+ . ......++.+.++++++ ..+.|+|++|+++++..+++.... +.++++
T Consensus 10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~ 89 (381)
T PRK02948 10 TPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKK 89 (381)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCC
Confidence 446899999999888652 1111 1 12445677888888886 567899999999999999875421 223334
Q ss_pred EEEEeCCCCCCchhHH---HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCC
Q 011959 184 IIKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (474)
Q Consensus 184 ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (474)
.|+.....|....... ...|..+..++.. ..+ ..|++++++.+++ ++++|+++.+++++|
T Consensus 90 ~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~-~~~-------------~~d~~~l~~~l~~---~~~lv~~~~~~n~tG 152 (381)
T PRK02948 90 HIITTPMEHASIHSYFQSLESQGYTVTEIPVD-KSG-------------LIRLVDLERAITP---DTVLASIQHANSEIG 152 (381)
T ss_pred EEEECCcccHHHHHHHHHHHhCCCEEEEEeeC-CCC-------------CCCHHHHHHhcCC---CCEEEEEECCcCCcE
Confidence 4555555555433332 2223222211110 001 1278999988863 567888888899999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcC-CCcceEEEEecHHH-HHhh
Q 011959 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPVGAYGGRRDI-MEMV 335 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~-~G~~iG~~~~~~~i-~~~~ 335 (474)
.+.| +++|.++|++||+++|+|++|. | .. ......++ .|++ +++|.+| .| +|+++.++++ +..+
T Consensus 153 ~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~--~~~~~~~~--~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~ 221 (381)
T PRK02948 153 TIQP----IAEIGALLKKYNVLFHSDCVQT-FGKL--PIDVFEMG--IDSLSVSAHKIYGPKG--VGAVYINPQVRWKPV 221 (381)
T ss_pred eehh----HHHHHHHHHHcCCEEEEEChhh-cccc--ccCcccCC--CCEEEecHHhcCCCCc--EEEEEEcCCCCCCCc
Confidence 9998 8999999999999999998884 3 11 11122233 4554 7899887 34 8998888764 1111
Q ss_pred cCCC-CcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee-----eceeEEEE
Q 011959 336 APAG-PMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-----ISGMFGFF 407 (474)
Q Consensus 336 ~~~~-~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-----~g~~~~i~ 407 (474)
.... .......++.|.++++++.++++.+.+ ++..++++++.+++++.|+++ ++.....+ ...++.+.
T Consensus 222 ~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~v~~~~~~~~~~~~i~~~~ 297 (381)
T PRK02948 222 FPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTL----PLPIEVEGHSTSCLPHIIGVT 297 (381)
T ss_pred ccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEeCCCccCcCCEEEEE
Confidence 1000 000112346788888999999887633 455667777777777777654 22111111 11122222
Q ss_pred EecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----------------------CcceEEe--cCCcHHHHHH
Q 011959 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFTS--LAHSSDDIQH 462 (474)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~~~~--~~~t~e~i~~ 462 (474)
+.. ....++...|.++||.+..+. ...+|++ ..+|++|+|+
T Consensus 298 ~~~--------------~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~ 363 (381)
T PRK02948 298 IKG--------------IEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDT 363 (381)
T ss_pred eCC--------------CCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHH
Confidence 211 012456667788999998532 1356776 4469999999
Q ss_pred HHHHHHHHHhh
Q 011959 463 TITAAEKVLRQ 473 (474)
Q Consensus 463 ~l~~l~~~~~~ 473 (474)
+++.|++++++
T Consensus 364 l~~~l~~~~~~ 374 (381)
T PRK02948 364 TIHALETIGNQ 374 (381)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-19 Score=176.62 Aligned_cols=316 Identities=16% Similarity=0.158 Sum_probs=196.5
Q ss_pred CHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCC-C--CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCC
Q 011959 117 DDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPS-I--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~~-~--~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (474)
++.|.+++.+... +.+ ...+...++.+.++++++. . +.+++++||+++++.++.. ....++++|+..+++|
T Consensus 15 ~~~v~~~~~~~~~---~~~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~--l~~~~~~vlv~~~~~~ 89 (363)
T TIGR02326 15 SRTVKEAMLFDWC---TWDSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGS--AVPKDGKLLVVINGAY 89 (363)
T ss_pred CHHHHHHhCCCCC---CCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHh--cCCCCCeEEEEeCChh
Confidence 4556555544331 111 1234456677788887762 2 3699999999999999984 2345677888777777
Q ss_pred CCch-hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHH
Q 011959 193 GHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (474)
Q Consensus 193 g~~~-~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (474)
+... ......|..+..++.+.... -|+++++++++.++ +++.|.+..+.+++|.+.| +++
T Consensus 90 ~~~~~~~a~~~g~~~~~v~~~~~~~--------------~d~~~l~~~l~~~~-~~~~v~~~~~~~~tG~~~~----i~~ 150 (363)
T TIGR02326 90 GARIVQIAEYLGIPHHVVDTGEVEP--------------PDVVEVEAILAADP-AITHIALVHCETTTGILNP----IEA 150 (363)
T ss_pred hHHHHHHHHHcCCceEEEeCCCCCC--------------CCHHHHHHHHhhCC-CccEEEEEeecCCccccCc----HHH
Confidence 7542 22233343332221111111 17999999987643 4556666666788999999 999
Q ss_pred HHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCc-c------
Q 011959 272 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM-Y------ 342 (474)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~-~------ 342 (474)
|.++|++||+++|+|++|+ +. +.......+ .+|++ +++|+++++..+|+++++++.++.+...... .
T Consensus 151 I~~l~~~~g~~livD~~~~-~g-~~~~~~~~~--~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 226 (363)
T TIGR02326 151 VAKLAHRHGKVTIVDAMSS-FG-GIPIDIAEL--HIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQ 226 (363)
T ss_pred HHHHHHHcCCEEEEEcccc-cc-Ccccchhhc--CccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHH
Confidence 9999999999999999885 31 112222223 35655 6889997655689999999888765421110 0
Q ss_pred --------cccCCCCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEec
Q 011959 343 --------QAGTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410 (474)
Q Consensus 343 --------~~~t~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~ 410 (474)
....|+.++..+.+..++++.+.++ +..++++++.+++++.|+++.......... ..+.+.++.+..
T Consensus 227 ~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~~~~ 305 (363)
T TIGR02326 227 WRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEI-QSPIITSFYSPE 305 (363)
T ss_pred HHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccc-CCceEEEEECCC
Confidence 0123456777777777888776443 355667777777777776642111000001 122334444422
Q ss_pred CCCcCcccccccchHHHHHHHHHHHHCCeEecccC---CcceEEe--cCCcHHHHHHHHHHHHHHHh
Q 011959 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTS--LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~~~~--~~~t~e~i~~~l~~l~~~~~ 472 (474)
.+ ......+.+.|.++||.+.++. ...+|++ ..++.+++++++++|++++.
T Consensus 306 ~~-----------~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 306 DP-----------DYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred CC-----------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 10 0112467888999999998774 2457875 34699999999999998864
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-19 Score=178.65 Aligned_cols=322 Identities=18% Similarity=0.145 Sum_probs=192.2
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC--CCC------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAP------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGV 171 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~------~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~a 171 (474)
|+|..+. +..++.|++++.+.+.....+ ... .+...++.+++++.++ ..++++|++||++++..+
T Consensus 2 yld~aa~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~a 75 (379)
T TIGR03402 2 YLDNNAT------TRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTA 75 (379)
T ss_pred cCCCcCC------CCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHH
Confidence 5665443 335789999999987642111 111 2335577788888886 567899999999999999
Q ss_pred HHHhHhh-cCCcEEEEEeCCCCCCchhHH--HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 172 LRLARAF-TGRERIIKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 172 l~~ar~~-~~~~~ii~~~~~yhg~~~~~~--~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
++..... .+++.||+....|++...... ...|..+..++.. ..+ .-|++++++.+++ +++
T Consensus 76 l~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~-~~g-------------~~~~~~l~~~i~~---~~~ 138 (379)
T TIGR03402 76 IKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVD-EEG-------------RLDLEELRAAITD---DTA 138 (379)
T ss_pred HHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccC-CCC-------------cCCHHHHHHhcCC---CcE
Confidence 9864322 344556555555544322211 1123322221111 011 0178999998863 568
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehh--hhcCCCcceEEEE
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYG 326 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~s--K~l~~G~~iG~~~ 326 (474)
+|+++.+++++|.+.| +++|.++|++||+++|+|++|+ + |. ...+......|++++| | +.|...+|++.
T Consensus 139 lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~--g~-~~~~~~~~~~D~~~~s~~K-~~gp~G~g~l~ 209 (379)
T TIGR03402 139 LVSVMWANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-V--GK-IPIDLKEMNIDMLSLSGHK-LHGPKGVGALY 209 (379)
T ss_pred EEEEEcccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-c--cc-cccCcccCCCCEEEEcHHH-cCCCCceEEEE
Confidence 8888888889999999 8899999999999999999995 1 11 1112223456888777 9 44333488887
Q ss_pred ecHHHHHhhcCCCC--c--ccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCe-eEEe-
Q 011959 327 GRRDIMEMVAPAGP--M--YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHA-ICGG- 398 (474)
Q Consensus 327 ~~~~i~~~~~~~~~--~--~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~v~- 398 (474)
.+++.. +.+... . ......+.|..+..+..++++.+.+ +...++.+++.+++++.|.+ ..+.. ....
T Consensus 210 v~~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~~~~ 284 (379)
T TIGR03402 210 IRKGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLA---RIPDARLNGDP 284 (379)
T ss_pred ECCCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh---hCCCEEEeCCC
Confidence 776541 221100 0 0011223466667777777877654 33334555555555555543 12211 1100
Q ss_pred --eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----------------------CcceEEe-
Q 011959 399 --YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFTS- 452 (474)
Q Consensus 399 --~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~~~~- 452 (474)
..+..+.+.+... + ..++...|.++||.+..+. ...+|++
T Consensus 285 ~~~~~~~~~~~~~~~-----------~---~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~ 350 (379)
T TIGR03402 285 TKRLPNTVNISFEYI-----------E---GEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSL 350 (379)
T ss_pred ccCCCCEEEEEecCC-----------C---HHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEc
Confidence 0112222222211 1 2467778888899987642 1346775
Q ss_pred -cCCcHHHHHHHHHHHHHHHhh
Q 011959 453 -LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 453 -~~~t~e~i~~~l~~l~~~~~~ 473 (474)
...|++|||++++.|++++++
T Consensus 351 ~~~~t~~di~~~~~~l~~~~~~ 372 (379)
T TIGR03402 351 SRYNTEEDIDYVLEVLPPIIAR 372 (379)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 456999999999999988764
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-18 Score=172.93 Aligned_cols=314 Identities=15% Similarity=0.140 Sum_probs=193.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---CCC------CCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHhHhh-cC
Q 011959 113 IGHADDQVLAALGETMKKGTS---FGA------PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAF-TG 180 (474)
Q Consensus 113 lG~~~p~v~~a~~~~~~~~~~---~~~------~~~~~~~la~~l~~~~~-~-~~~v~~~~sGseA~~~al~~ar~~-~~ 180 (474)
.|..++.+++++.+.+..... .+. ......++.+.++++++ . .+.+++++|+++++..+++..... .+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~ 87 (373)
T cd06453 8 TSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKP 87 (373)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCC
Confidence 355689999999988755311 111 12334567788888875 3 568999999999999999853211 14
Q ss_pred CcEEEEEeCCCCCCchhHHH---hcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccC
Q 011959 181 RERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (474)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (474)
+++|++.++.|.+....... ..|..+..++... .+ .-|++++++.+.+ ++++|++..+++
T Consensus 88 g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~---~~~~v~~~~~~~ 150 (373)
T cd06453 88 GDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDD-DG-------------QLDLEALEKLLTE---RTKLVAVTHVSN 150 (373)
T ss_pred CCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCC-CC-------------CcCHHHHHHHhcC---CceEEEEeCccc
Confidence 56788777666553222111 2232222111110 00 0178999998864 578888888888
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehh--hhcCCCcceEEEEecHHHHHhh
Q 011959 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMV 335 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~s--K~l~~G~~iG~~~~~~~i~~~~ 335 (474)
++|.+.+ +++|.++|++||++||+|++|+.... ........+|++++| |.+++ .++|++++++++++.+
T Consensus 151 ~tG~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~----~~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~~~~~~ 221 (373)
T cd06453 151 VLGTINP----VKEIGEIAHEAGVPVLVDGAQSAGHM----PVDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEELLEEM 221 (373)
T ss_pred ccCCcCC----HHHHHHHHHHcCCEEEEEhhhhcCce----eeeccccCCCEEEeccccccCC-CCcEEEEEchHHhhcC
Confidence 8999998 89999999999999999999952111 111112356888776 99986 6689999999988877
Q ss_pred cCCCCcc------------------cccCCCCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHhhhcCCe
Q 011959 336 APAGPMY------------------QAGTLSGNPLAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDAGKKAGHA 394 (474)
Q Consensus 336 ~~~~~~~------------------~~~t~~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (474)
.+..... .+...+.|..++.+..++++.+.+.+ ..++.+++.+++++.|+++. ...+.
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~-~~~~~ 300 (373)
T cd06453 222 PPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIP-GVRVY 300 (373)
T ss_pred CCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCC-CeEEe
Confidence 6321000 00111234445555566777766533 44555555566666555431 01111
Q ss_pred eEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------------CcceEEec--CCcHHHH
Q 011959 395 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------FEAGFTSL--AHSSDDI 460 (474)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------------~~~~~~~~--~~t~e~i 460 (474)
......+.++.+.+... ...++.+.|.++||.+.++. ...+|+++ .+|++|+
T Consensus 301 ~~~~~~~~~~~~~~~~~--------------~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di 366 (373)
T cd06453 301 GDAEDRAGVVSFNLEGI--------------HPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEI 366 (373)
T ss_pred CCccccCCeEEEEECCc--------------CHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHH
Confidence 11122355666655321 12578889899999987543 23567764 4699999
Q ss_pred HHHHHHH
Q 011959 461 QHTITAA 467 (474)
Q Consensus 461 ~~~l~~l 467 (474)
|++++.|
T Consensus 367 ~~~~~~l 373 (373)
T cd06453 367 DALVEAL 373 (373)
T ss_pred HHHHhhC
Confidence 9999864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-18 Score=173.93 Aligned_cols=323 Identities=13% Similarity=0.143 Sum_probs=193.2
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CC--CCC-----CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SF--GAP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEACM 169 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~--~~~-----~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~ 169 (474)
..|+|..+. |..++.+++++.+.+.... .. .++ .+...++.+.++++++ ..+.+++++|+++++.
T Consensus 18 ~~yl~~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~ 91 (397)
T TIGR01976 18 RVFFDNPAG------TQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTF 91 (397)
T ss_pred eEEecCCcc------CCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHH
Confidence 367775443 3468999999999886521 11 121 2345788888888886 3457999999999988
Q ss_pred HHHHHhHh-hcCCcEEEEEeCCCCCCchhH---HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCC
Q 011959 170 GVLRLARA-FTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (474)
Q Consensus 170 ~al~~ar~-~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (474)
.++..... ..++++|++.++.|++..... ....|..+..++.....+ ..|++++++.+..
T Consensus 92 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~-------------~~~~~~l~~~i~~--- 155 (397)
T TIGR01976 92 LLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATG-------------ELHPDDLASLLSP--- 155 (397)
T ss_pred HHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCC-------------CcCHHHHHHhcCC---
Confidence 77764322 334577887776666543322 122343322211110001 0178899988863
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceE
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVG 323 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG 323 (474)
++++|+++.+++++|.+.+ +++|.++|++||+++|+||+|.. ... ..... ...+|++ +++|.+| +|+|
T Consensus 156 ~~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~~-~~~-~~~~~--~~~~d~~~~s~~K~~g--~~~G 225 (397)
T TIGR01976 156 RTRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHYA-PHG-LIDVQ--ATGADFLTCSAYKFFG--PHMG 225 (397)
T ss_pred CceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhhc-ccc-CCCHH--HcCCCEEEEechhhcC--CceE
Confidence 5788888888899999988 99999999999999999999941 111 11112 2245655 6889884 5799
Q ss_pred EEEecHHHHHhhcCCCCccccc-------CCCCChHHHHHHHHHHHHhcCCC-------------HHHHHHHHHHHHHHH
Q 011959 324 AYGGRRDIMEMVAPAGPMYQAG-------TLSGNPLAMTAGIHTLKRLKEPG-------------TYEYLNKITGELTQG 383 (474)
Q Consensus 324 ~~~~~~~i~~~~~~~~~~~~~~-------t~~~~~~~~aaa~aal~~~~~~~-------------~~~~~~~~~~~l~~~ 383 (474)
++++++++++.+.+....+... ..+.|...+++..++++.+.+.+ ..+.+.++...+.+.
T Consensus 226 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 305 (397)
T TIGR01976 226 ILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEY 305 (397)
T ss_pred EEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999988776421111111 11234445555556676654321 123333333334444
Q ss_pred HHHHhhhcC-CeeEE----eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc--------------
Q 011959 384 IIDAGKKAG-HAICG----GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-------------- 444 (474)
Q Consensus 384 L~~~~~~~~-~~~~v----~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------------- 444 (474)
|.+.+.+.+ +.... ...+.++.+.+.. ....++.+.|.++||++..+
T Consensus 306 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~ 371 (397)
T TIGR01976 306 LLVGLSDLPGVTLYGVARLAARVPTVSFTVHG--------------LPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLN 371 (397)
T ss_pred HHHHHhcCCCEEEeCCCCccCCCceEEEEeCC--------------cCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCC
Confidence 433332333 11111 1134444444321 11256888899999999754
Q ss_pred -CCcceEEe--cCCcHHHHHHHHHHH
Q 011959 445 -QFEAGFTS--LAHSSDDIQHTITAA 467 (474)
Q Consensus 445 -~~~~~~~~--~~~t~e~i~~~l~~l 467 (474)
....+|++ ..+|++|++++++.|
T Consensus 372 ~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 372 DEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred CCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 12246764 567999999999864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.9e-19 Score=173.87 Aligned_cols=328 Identities=13% Similarity=0.079 Sum_probs=190.8
Q ss_pred cCCCCCHHHHHHHHHHHHhc--CC--CCC----CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcE
Q 011959 112 IIGHADDQVLAALGETMKKG--TS--FGA----PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 183 (474)
Q Consensus 112 ~lG~~~p~v~~a~~~~~~~~--~~--~~~----~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ 183 (474)
.-|+..|.+++++.+.-... .+ .+. ..+...++.+.+++++ +.+++++++|+++++..+++. ...++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~i~~~~g~t~al~~~l~~--~~~~gd~ 85 (361)
T cd06452 9 RGGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFL-GMDEARVTPGAREGKFAVMHS--LCEKGDW 85 (361)
T ss_pred cCCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHc-CCceEEEeCCHHHHHHHHHHH--hcCCCCE
Confidence 34566888888888876331 11 111 1345678888888888 458999999999999999984 2334566
Q ss_pred EEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC----CCeEEEEEccccCCC
Q 011959 184 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK----GEIAAIILEPVVGNS 259 (474)
Q Consensus 184 ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~----~~~a~vi~ep~~~~~ 259 (474)
|++...+|++.. ..+...|..+..++...... + .-|++++++.+++.. .++++|+++.+++++
T Consensus 86 Vl~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~---------~---~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~t 152 (361)
T cd06452 86 VVVDGLAHYTSY-VAAERAGLNVREVPNTGHPE---------Y---HITPEGYAEVIEEVKDEFGKPPALALLTHVDGNY 152 (361)
T ss_pred EEEcCCcchHHH-HHHHhcCCEEEEEecCCCCC---------c---ccCHHHHHHHHHHHhhccCCCceEEEEECCCCCC
Confidence 776655555533 33333444332221110000 0 117899998886421 257788887777888
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCC
Q 011959 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG 339 (474)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~ 339 (474)
|.+.+ +++|.++|++||+++|+||+|..-. ..+....++....+.+++|++++|.|+|++++++++++.+....
T Consensus 153 G~~~~----~~~i~~~~~~~~~~vivD~a~~~g~--~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~ 226 (361)
T cd06452 153 GNLHD----AKKIAKVCHEYGVPLLLNGAYTVGR--MPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTS 226 (361)
T ss_pred eeecc----HHHHHHHHHHcCCeEEEECCcccCC--cCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhccc
Confidence 98877 9999999999999999999995111 01222233443334478999987779999999999998886432
Q ss_pred Ccc-------cccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE--EeeeceeEEEEEe
Q 011959 340 PMY-------QAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAIC--GGYISGMFGFFFT 409 (474)
Q Consensus 340 ~~~-------~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--v~~~g~~~~i~~~ 409 (474)
..+ .+++ .++..+.++.++++.+.+ -..+.+..++.+++++.|+++. ++... ..+...++.+...
T Consensus 227 ~~~~~~~~~~~~~~--~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l~---g~~v~~~~~~~~n~~~~~~~ 301 (361)
T cd06452 227 QMFKIKEVELLGCT--LRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKIE---GIKQLGEKPKNHDLMFFETP 301 (361)
T ss_pred cccccceeeeeccc--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEECCCCCCCceEEEEcC
Confidence 211 1111 122334455555654322 1122222233456666665431 21110 0122333333321
Q ss_pred cCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-cceEEe-cCCcHHHHHHHHHHHHHHH
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTS-LAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~-~~~t~e~i~~~l~~l~~~~ 471 (474)
.+............++.+.|+++||++...+. ..+|+. ..+++|+++.++++|+++.
T Consensus 302 -----~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 302 -----SFDEIAKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred -----CcchhhhhccccchhHHHHHHHcCceEEcCCCceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 00000000001123588999999999654333 234553 3579999999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=174.43 Aligned_cols=311 Identities=16% Similarity=0.151 Sum_probs=191.9
Q ss_pred CCHHHHHHHHHHHHhc--CC--CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh----cCCcEEEE
Q 011959 116 ADDQVLAALGETMKKG--TS--FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF----TGRERIIK 186 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~--~~--~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~----~~~~~ii~ 186 (474)
.+|.+.+++.+.+... .. +........++.++++++++ ..+.+++++||++++..++..++.. .+++.|++
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~ 111 (373)
T TIGR03812 32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIV 111 (373)
T ss_pred chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 6778888887765442 11 11223556888999999886 3457889999999999998765432 23357777
Q ss_pred EeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCH
Q 011959 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 187 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
.+++|+.+ .......|..+..++... .+ ..|++++++.++++ ..+.+++.| ++++|.+.+
T Consensus 112 ~~~~h~~~-~~~~~~~G~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~vv~~~~-~~~tG~~~~-- 171 (373)
T TIGR03812 112 PESAHFSF-EKAAEMLGLELRYAPLDE-DY-------------TVDVKDVEDLIDDN--TIGIVGIAG-TTELGQIDD-- 171 (373)
T ss_pred CCcchHHH-HHHHHHcCCeEEEEeeCC-CC-------------CcCHHHHHHHHhhC--cEEEEEECC-CCCCCccCC--
Confidence 76666543 223333343222211110 00 12799999988743 345566665 567899888
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-cc-CCCc-cccccC---CCCceee--hhhhcCCCcceEEEE-ecHHHHHhhcC
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGF-RL-AYGG-AQEYFG---VTPDLTT--LGKIIGGGLPVGAYG-GRRDIMEMVAP 337 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~-g~~~-~~~~~g---~~pdi~t--~sK~l~~G~~iG~~~-~~~~i~~~~~~ 337 (474)
+++|.++|++||+++|+|++|.++ .. ..++ ...... ...|.++ ..|...+++|.|+++ .++++++.+..
T Consensus 172 --~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~ 249 (373)
T TIGR03812 172 --IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSV 249 (373)
T ss_pred --HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhcc
Confidence 999999999999999999999755 21 1110 000111 1235444 347433567888764 67888777642
Q ss_pred CCCcccccC------CCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEE
Q 011959 338 AGPMYQAGT------LSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408 (474)
Q Consensus 338 ~~~~~~~~t------~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~ 408 (474)
..+ +.... .+.++..++++.++|+.+.+ ++..+++.++.+++++.|+++ +......+...++.+.+
T Consensus 250 ~~~-~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~v~~~~ 324 (373)
T TIGR03812 250 DAP-YLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI----GFEPVIEPVLNIVAFEV 324 (373)
T ss_pred cCc-ccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEcCCCceEEEEEe
Confidence 212 11111 13345677788888887754 346777888888888888764 22211222333433333
Q ss_pred ecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-CcceEEe--cCCcHHHHHHHHHHHHH
Q 011959 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTS--LAHSSDDIQHTITAAEK 469 (474)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~~~--~~~t~e~i~~~l~~l~~ 469 (474)
. + ...+.+.|.++||++.... ...+|++ ..+|++|+++++++|++
T Consensus 325 ~-------------~---~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 325 D-------------D---PEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred C-------------C---HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 1 1 1468888999999998763 3456774 55899999999999975
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-19 Score=168.10 Aligned_cols=323 Identities=19% Similarity=0.185 Sum_probs=202.7
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCC----------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP----------CLLENVLAEMVISAVP-SIEMVRFVNSGTEAC 168 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~----------~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~ 168 (474)
-|+|..+. .+ -+|+|++++...+... ||.| ....++-.+.+++..+ .+++|+||++|||++
T Consensus 3 iYlD~~AT---Tp---~~~~v~~~m~~~~~~~--fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsn 74 (386)
T COG1104 3 IYLDNAAT---TP---VDPEVLEAMLPYLTEV--FGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESN 74 (386)
T ss_pred cccccccc---CC---CCHHHHHHHHHHHHhh--cCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHH
Confidence 47887765 22 4799999999998763 2222 2334455666777776 568999999999999
Q ss_pred HHHHHHh-Hhhc---CCcEEEEEeCCCCCCchhHHHhc---CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHh
Q 011959 169 MGVLRLA-RAFT---GRERIIKFEGCYHGHADPFLVKA---GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 241 (474)
Q Consensus 169 ~~al~~a-r~~~---~~~~ii~~~~~yhg~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~ 241 (474)
..||+-+ .++. +++.||+ ...=|-.....+... |..+-.++ +...|.. |+++|+++|+
T Consensus 75 NlaI~g~~~a~~~~~~~~HIIt-s~iEH~aVl~~~~~Le~~g~~Vtyl~-V~~~G~v-------------~~e~L~~al~ 139 (386)
T COG1104 75 NLAIKGAALAYRNAQKGKHIIT-SAIEHPAVLNTCRYLERQGFEVTYLP-VDSNGLV-------------DLEQLEEALR 139 (386)
T ss_pred HHHHHhhHHhhhcccCCCeEEE-cccccHHHHHHHHHHHhcCCeEEEeC-CCCCCeE-------------cHHHHHHhcC
Confidence 9999953 2222 2345554 445555444433322 32222211 1222321 8999999998
Q ss_pred cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehh--hhcCCC
Q 011959 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGG 319 (474)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~s--K~l~~G 319 (474)
+++.+|.+.-+||+.|.+.| +++|.++|+++|+++++|-||. .|+ ...+......|+++|| |-.| .
T Consensus 140 ---~~T~LVSim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa---~Gk-ipi~~~~~~vD~ls~SaHK~~G-p 207 (386)
T COG1104 140 ---PDTILVSIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA---VGK-IPIDLEELGVDLLSFSAHKFGG-P 207 (386)
T ss_pred ---CCceEEEEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh---cCc-eeccccccCcceEEeehhhccC-C
Confidence 46899999999999999999 9999999999999999999996 232 1122222236899887 4443 2
Q ss_pred cceEEEEecHHHH-HhhcCC---CCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011959 320 LPVGAYGGRRDIM-EMVAPA---GPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGH 393 (474)
Q Consensus 320 ~~iG~~~~~~~i~-~~~~~~---~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (474)
=.+|+++.++.+. +.+... .+....+| .|..+.++..+|+++..+ +....++.+++++|.+.|.+.....-+
T Consensus 208 kGiGaLyv~~~~~~~p~i~GGgQE~g~RsGT--env~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~ 285 (386)
T COG1104 208 KGIGALYVRPGVRLEPLIHGGGQERGLRSGT--ENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYL 285 (386)
T ss_pred CceEEEEECCCCccCceeccCcCCCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 2499998766542 111111 01122233 355666666677776544 566777778888888888765322111
Q ss_pred eeE-EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-----------------------cce
Q 011959 394 AIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------------EAG 449 (474)
Q Consensus 394 ~~~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----------------------~~~ 449 (474)
... .......+.+.|..- ..+.+...|-.+||.+..+.. ..+
T Consensus 286 ~g~~~~rlP~~~~~~f~gv--------------~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~si 351 (386)
T COG1104 286 NGDDEPRLPNILNFSFPGV--------------EGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSI 351 (386)
T ss_pred cCCcccCCCCeEEEEeCCC--------------cHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccE
Confidence 111 122333444444321 124556666677999876531 124
Q ss_pred EEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 450 FTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 450 ~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
|++ ...|++|+|.+++.|.+++++
T Consensus 352 R~S~g~~tt~eei~~~~~~l~~~i~~ 377 (386)
T COG1104 352 RFSLGRFTTEEEIDAAAEALKEIIKR 377 (386)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 665 455999999999999999875
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-18 Score=172.45 Aligned_cols=317 Identities=17% Similarity=0.165 Sum_probs=195.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCC---CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCC
Q 011959 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (474)
..+.+.+++.+... .......+...++.+.+++.++. .+.+++++||+++++.++... ...++++++.+.+|+
T Consensus 16 ~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l--~~~~~~vlv~~~~~~ 91 (368)
T PRK13479 16 TSRTVREAMLRDWG--SWDDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSL--VPRDGKVLVPDNGAY 91 (368)
T ss_pred CCHHHHHHhCCCCC--CCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhc--cCCCCeEEEEeCCch
Confidence 46677777655431 11101224567888888888763 245889999999999999852 345678888887777
Q ss_pred CCch-hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHH
Q 011959 193 GHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (474)
Q Consensus 193 g~~~-~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (474)
+... ......|..+..++..... ..|++++++.+++++ ++++|.+..+++++|.+.| +++
T Consensus 92 ~~~~~~~~~~~g~~~~~i~~~~~~--------------~~d~~~l~~~l~~~~-~~~~v~~~~~~~~tG~~~~----~~~ 152 (368)
T PRK13479 92 GARIAQIAEYLGIAHVVLDTGEDE--------------PPDAAEVEAALAADP-RITHVALVHCETTTGILNP----LDE 152 (368)
T ss_pred HHHHHHHHHHcCCcEEEEECCCCC--------------CCCHHHHHHHHHhCC-CCcEEEEEcccCccccccC----HHH
Confidence 6532 2223334433222111100 127999999887542 4566667677778999998 899
Q ss_pred HHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcc-------
Q 011959 272 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY------- 342 (474)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~------- 342 (474)
|.++|+++|+++|+|++|. |. ....... ...+|++ +++|++.+...+|++++++++++.+......+
T Consensus 153 i~~l~~~~~~~livDa~~~-~g-~~~~~~~--~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (368)
T PRK13479 153 IAAVAKRHGKRLIVDAMSS-FG-AIPIDIA--ELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQ 228 (368)
T ss_pred HHHHHHHcCCEEEEEcccc-cC-Ccccccc--ccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHH
Confidence 9999999999999997773 31 1111122 2235654 68898865444799999999888776421110
Q ss_pred -------cccCCCCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe---eeceeEEEEE
Q 011959 343 -------QAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGG---YISGMFGFFF 408 (474)
Q Consensus 343 -------~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~---~~g~~~~i~~ 408 (474)
....|+.|...+.+..++++.+.+ ++..+++.++.+++++.|+++ ++..... .......+.+
T Consensus 229 ~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~ 304 (368)
T PRK13479 229 WAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL----GFEPLLDAEIQSPIIVTFHA 304 (368)
T ss_pred HhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc----CCcccCCchhcCceEEEEEC
Confidence 111245666677777777876644 234455666666666666554 3211101 1111222222
Q ss_pred ecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC---cceEEec--CCcHHHHHHHHHHHHHHHhhC
Q 011959 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAGFTSL--AHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~~~~--~~t~e~i~~~l~~l~~~~~~~ 474 (474)
...+ .....++.+.|.++||.+.++.. ..+|++. ..+++|++++++.|+++++++
T Consensus 305 ~~~~-----------~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 305 PADP-----------AYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred CCCC-----------CcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 1110 01125788899999999987632 3578854 349999999999999998753
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-18 Score=173.30 Aligned_cols=326 Identities=17% Similarity=0.178 Sum_probs=201.0
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCC-CCC------CHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSF-GAP------CLLENVLAEMVISAVP-S-IEMVRFVNSGTEAC 168 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~-~~~------~~~~~~la~~l~~~~~-~-~~~v~~~~sGseA~ 168 (474)
.|+|..+. |..++.+.+++.+.+... ... +.. .....++.+.++++++ . .+.+++++|+++++
T Consensus 20 ~yld~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l 93 (403)
T TIGR01979 20 VYLDSAAT------SQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESI 93 (403)
T ss_pred EEEeCccc------cCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHH
Confidence 57775433 446788999998877642 111 111 1234577788888876 3 46899999999999
Q ss_pred HHHHHHhH--hhcCCcEEEEEeCCCCCCchhHH---HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC
Q 011959 169 MGVLRLAR--AFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (474)
Q Consensus 169 ~~al~~ar--~~~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (474)
..+++... ....++.|++.+..|++...... ...|..+..++.. ..+ .-|++++++.+.+
T Consensus 94 ~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~-~~~-------------~~~~~~l~~~i~~- 158 (403)
T TIGR01979 94 NLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD-DDG-------------TLDLDDLEKLLTE- 158 (403)
T ss_pred HHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC-CCC-------------CCCHHHHHHHhcc-
Confidence 98887431 13446677777766665432221 1223322211111 001 0178899888863
Q ss_pred CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcc
Q 011959 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLP 321 (474)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~ 321 (474)
++++|++..+++++|.+.| +++|.++|++||+++|+|++|.... ....... ..+|++ +++|.+|+ ..
T Consensus 159 --~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~~g~--~~~~~~~--~~~d~~~~s~~K~~gp-~G 227 (403)
T TIGR01979 159 --KTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQAVPH--MPVDVQA--LDCDFYVFSGHKMYGP-TG 227 (403)
T ss_pred --CCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhhcCc--cccCccc--cCCCEEEEecccccCC-CC
Confidence 5788888888888999999 9999999999999999999995210 0111122 245665 67898762 23
Q ss_pred eEEEEecHHHHHhhcCCCCc------------------ccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHH
Q 011959 322 VGAYGGRRDIMEMVAPAGPM------------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGEL 380 (474)
Q Consensus 322 iG~~~~~~~i~~~~~~~~~~------------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l 380 (474)
+|++++++++++.+.+.... ..+..-+.+...+.+..++++.+.+ +...++..++.+++
T Consensus 228 ~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l 307 (403)
T TIGR01979 228 IGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYA 307 (403)
T ss_pred ceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 89999999887766421000 0000113455566777778877654 34556666666666
Q ss_pred HHHHHHHhhhcCCeeEEe----eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----------
Q 011959 381 TQGIIDAGKKAGHAICGG----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------- 445 (474)
Q Consensus 381 ~~~L~~~~~~~~~~~~v~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------- 445 (474)
++.|+++. ++....+ ..+.++.+.+... ...++.+.|.++||.+..+.
T Consensus 308 ~~~l~~~~---g~~~~~~~~~~~~~~~v~~~~~~~--------------~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~ 370 (403)
T TIGR01979 308 LERLGEIP---GLRIYGPRDAEDRGGIISFNVEGV--------------HPHDVGTILDEEGIAVRSGHHCAQPLMRRFG 370 (403)
T ss_pred HHHHhcCC---CEEEeCCCCccccCceEEEEeCCc--------------CHHHHHHHHhhCCEEEcchhhhhHHHHHHhC
Confidence 66665431 1111111 1255666655321 12457778889999987542
Q ss_pred -CcceEEec--CCcHHHHHHHHHHHHHHHhhC
Q 011959 446 -FEAGFTSL--AHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 446 -~~~~~~~~--~~t~e~i~~~l~~l~~~~~~~ 474 (474)
...+|+++ ..|++|+++++++|+++++.+
T Consensus 371 ~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 371 VPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred CCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 23467754 459999999999999987753
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-17 Score=168.64 Aligned_cols=326 Identities=15% Similarity=0.157 Sum_probs=203.6
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--C-CCCC------CHHHHHHHHHHHhhCC--CCCeEEEeCCHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--S-FGAP------CLLENVLAEMVISAVP--SIEMVRFVNSGTE 166 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~-~~~~------~~~~~~la~~l~~~~~--~~~~v~~~~sGse 166 (474)
+..|+|..+. +..++.|++++.+.+.... . .+.. .+...++.+.++++++ ..++|+|++|+++
T Consensus 23 ~~iYld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~ 96 (406)
T PRK09295 23 PLAYLDSAAS------AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTE 96 (406)
T ss_pred ceEEEeCccc------ccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHH
Confidence 3468886654 3357889999998886521 1 1111 2345577788888885 3579999999999
Q ss_pred HHHHHHHHhH--hhcCCcEEEEEeCCCCCCchhHHH---hcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHh
Q 011959 167 ACMGVLRLAR--AFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 241 (474)
Q Consensus 167 A~~~al~~ar--~~~~~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~ 241 (474)
++..+++... ...++++||+.+..||+....... ..|..+..++... .+ ..|+++|++.++
T Consensus 97 ~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~-~~-------------~~d~~~l~~~i~ 162 (406)
T PRK09295 97 GINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNP-DG-------------TLQLETLPALFD 162 (406)
T ss_pred HHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC-CC-------------CCCHHHHHHhcC
Confidence 9998887421 224457888888777765433222 1233222211110 01 017899998886
Q ss_pred cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceee--hhhhcCCC
Q 011959 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIGGG 319 (474)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t--~sK~l~~G 319 (474)
. ++++|++..+++++|.+.| +++|.++|++||+++|+|++|.-... ..... ...+|+++ ++|.+|+
T Consensus 163 ~---~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~~g~~--~~~~~--~~~~D~~~~s~~K~~gp- 230 (406)
T PRK09295 163 E---RTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQAVMHH--PVDVQ--ALDCDFYVFSGHKLYGP- 230 (406)
T ss_pred C---CcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccccCcc--ccCch--hcCCCEEEeehhhccCC-
Confidence 3 5788888888889999999 99999999999999999999952111 11122 23457664 5697662
Q ss_pred cceEEEEecHHHHHhhcCCCC---c----------------ccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHH
Q 011959 320 LPVGAYGGRRDIMEMVAPAGP---M----------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKIT 377 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~---~----------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~ 377 (474)
-.+|++++++++++.+.+... . ..+.+-+.|..++.+..++++.+.+ +...++.+++.
T Consensus 231 ~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~ 310 (406)
T PRK09295 231 TGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLM 310 (406)
T ss_pred CCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 238999999998776542100 0 0011124567778888888988765 34455566666
Q ss_pred HHHHHHHHHHhhhcCCeeEEe-eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----------
Q 011959 378 GELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------- 445 (474)
Q Consensus 378 ~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------- 445 (474)
+++++.|.++. ++....+ ....++.+.+... ...++.+.|.++||.++.+.
T Consensus 311 ~~l~~~l~~~~---~~~~~~~~~~~~iv~~~~~~~--------------~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~ 373 (406)
T PRK09295 311 HYALSQLESVP---DLTLYGPQNRLGVIAFNLGKH--------------HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYN 373 (406)
T ss_pred HHHHHHHhcCC---CEEEeCCCCCceEEEEEECCc--------------CHHHHHHHHHhCCeEEeccccchHHHHHHHC
Confidence 66666665431 1111111 1234445444211 12456777888999986542
Q ss_pred -CcceEEe--cCCcHHHHHHHHHHHHHHHh
Q 011959 446 -FEAGFTS--LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 446 -~~~~~~~--~~~t~e~i~~~l~~l~~~~~ 472 (474)
...+|++ ...|++|||++++.|+++..
T Consensus 374 ~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 374 VPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred CCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 1246775 45699999999999988754
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=173.98 Aligned_cols=318 Identities=14% Similarity=0.089 Sum_probs=199.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCC
Q 011959 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~-~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~ 194 (474)
+++|++++.+..... ......+...+++++++++++ . .+.+++++||+++++.++.. .+.++++|++.+.+|++.
T Consensus 21 ~~~V~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~--~~~~Gd~Vlv~~~~~~~~ 97 (401)
T PLN02409 21 PERVLRAMNRPNEDH-RSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTN--TLSPGDKVVSFRIGQFSL 97 (401)
T ss_pred CHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHh--cCCCCCEEEEeCCCchhH
Confidence 566666664432110 001124567788888888876 2 35789999999999999874 345678899998777764
Q ss_pred chhH-HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC-CCeEEEEEccccCCCCcccCCHHHHHHH
Q 011959 195 ADPF-LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (474)
Q Consensus 195 ~~~~-~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (474)
.... +...|..+..++.+...+ -|++++++.++.++ +++++|++..+.+.+|.+.| +++|
T Consensus 98 ~~~~~~~~~g~~v~~v~~~~~~~--------------~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~----~~~i 159 (401)
T PLN02409 98 LWIDQMQRLNFDVDVVESPWGQG--------------ADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTND----LAGV 159 (401)
T ss_pred HHHHHHHHcCCceEEEECCCCCC--------------CCHHHHHHHHhhCcCCCccEEEEEeecccccccCC----HHHH
Confidence 3211 222343332221111111 17899999998532 26788888888888999999 8888
Q ss_pred HHH--HHHhCCEEEEeccccCcccCC-CccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCC--ccc--
Q 011959 273 RRI--TKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGP--MYQ-- 343 (474)
Q Consensus 273 ~~l--~~~~g~llI~DEv~~g~r~g~-~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~--~~~-- 343 (474)
.++ |++||+++|+|++++ + |. ....+.++ .|++ +.+|+|+++.++|+++.++++++.+.+... .+.
T Consensus 160 ~~l~~~~~~g~~~vvD~v~s-~--g~~~id~~~~~--~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~ 234 (401)
T PLN02409 160 RKLLDCAQHPALLLVDGVSS-I--GALDFRMDEWG--VDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDW 234 (401)
T ss_pred HHHHhhhccCcEEEEEcccc-c--CCccccccccC--ccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCH
Confidence 888 999999999999996 2 11 11122233 4555 578999866679999999999888764211 110
Q ss_pred --------cc---CCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEe
Q 011959 344 --------AG---TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (474)
Q Consensus 344 --------~~---t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (474)
.+ .++.|...+.+..++++.+.+ +...++.+++.+++++.|+++..+.-....-...+.+.++.+.
T Consensus 235 ~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p 314 (401)
T PLN02409 235 ADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVP 314 (401)
T ss_pred HHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCC
Confidence 11 234555667777888887654 4566677777777777776542111000000011223334332
Q ss_pred cCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC----CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
. .....++.+.|. ++||.+.++. ...+|++ ...+++++..++++|++++.+
T Consensus 315 ~-------------~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~ 372 (401)
T PLN02409 315 E-------------GIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKD 372 (401)
T ss_pred C-------------CCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 111245666665 6699998763 2346774 455999999999999999875
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-18 Score=161.69 Aligned_cols=323 Identities=21% Similarity=0.219 Sum_probs=199.3
Q ss_pred EeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCC
Q 011959 102 IDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR 181 (474)
Q Consensus 102 iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~ 181 (474)
+||.|. +.-| .+|++++++.++-..+..-++.++...++.+++++.+ +.+.++|++|||.||..+|. .++++
T Consensus 2 ~~f~SD---n~~g-~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~~~ae~~-g~~a~~Fv~sGT~aN~lal~---~~~~~ 73 (342)
T COG2008 2 IDFRSD---NVAG-PTPEMREALAAANAVGDDVYGEDPTTNALEQRIAELF-GKEAALFVPSGTQANQLALA---AHCQP 73 (342)
T ss_pred CccccC---ccCC-CCHHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHHh-CCceEEEecCccHHHHHHHH---HhcCC
Confidence 466665 3333 7999999998876443333446777888999999988 55999999999999999999 66677
Q ss_pred cEEEEEeCCCCCCchhH--HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhc---CCCCeEEEEEcccc
Q 011959 182 ERIIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVV 256 (474)
Q Consensus 182 ~~ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~a~vi~ep~~ 256 (474)
...++....-|-..+.+ ....+.+......+...|.. ++++++..+.. +...+..+++|...
T Consensus 74 ~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gkl-------------t~e~v~~~i~~~d~~~~~~~~~~~e~~~ 140 (342)
T COG2008 74 GESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKL-------------TPEDVEAAIRPDDIHHAPTPLAVLENTA 140 (342)
T ss_pred CCeEEEeccccceecccCcHHHHcCCceeccCCCCCCCc-------------CHHHHHHhhcCCCcccCCCceEEEeecc
Confidence 77777766666554322 22222111111111122221 79999987773 12245666666666
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--c-ccCCCccccccCCCCcee--ehhhhcCCCcceEEE-EecHH
Q 011959 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG--F-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY-GGRRD 330 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~-~~~~~ 330 (474)
+++|.+.|.++ |++|.++|++||+.|.+|-+.-. . -.+ -....+.-..|++ ++||.+ |+|+|++ +++++
T Consensus 141 te~GtVy~l~e-l~~i~~~~k~~~l~LHmDGAR~~nA~valg--~~~~~~~~~~D~v~~~~tK~g--~~~~gAiv~gn~~ 215 (342)
T COG2008 141 TEGGTVYPLDE-LEAISAVCKEHGLPLHMDGARLANALVALG--VALKTIKSYVDSVSFCLTKGG--GAPVGAIVFGNRD 215 (342)
T ss_pred CCCceecCHHH-HHHHHHHHHHhCCceeechHHHHHHHHHcC--CCHHHHHhhCCEEEEecccCC--cceeeeEEEcCHH
Confidence 68888877666 99999999999999999965521 1 111 1111222234666 456654 5689998 78888
Q ss_pred HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHH----HHHHHHHHHHHHHhhhcCCeeEEeeeceeEEE
Q 011959 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN----KITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (474)
Q Consensus 331 i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (474)
+++.++...+. .++-++..-+..++++.+|+ +++..... ++.++|.+.|+.. .+.....+...+++.+
T Consensus 216 ~~~~a~~~rK~-~Ggl~~k~r~laA~~~~~l~----~~~~~~~~~Han~mA~~La~~~~~~---~G~~~~~~~~tN~vf~ 287 (342)
T COG2008 216 FAKRARRWRKR-AGGLMRKARFLAAQGLYALE----DDVWRLAADHANAMAARLAEGLEAK---PGVKLAFPVETNMVFV 287 (342)
T ss_pred HHHHHHHHHHH-hcccHhhhhHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHhhhhc---CCceeccCCcccEEEE
Confidence 88777632222 23334444555566666664 33332222 3355555555532 2333333455666666
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHH
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~ 471 (474)
.+.+. ..........+..+|+++.+.+ ..+|+ +...|+++++++++.+++++
T Consensus 288 ~l~~~------------~i~~l~~~~~~~~~~~~~~~~~-~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 288 RLPES------------AIEALRLAGALFYRGVLIGAHG-EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred ECChH------------HHHHHHhhchhheeeeeccCCC-ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 55321 0112334455667788877765 33444 78999999999999998764
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-17 Score=163.87 Aligned_cols=320 Identities=13% Similarity=0.105 Sum_probs=192.5
Q ss_pred EEEeccCChhhccCCCC--CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHh
Q 011959 100 EYIDYVGSWGPAIIGHA--DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA 177 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~ 177 (474)
.+|+..+-+ .+||-+ +++|++++.+.++. +....++..++++++++++ +.+++++++|+++|+..+++..
T Consensus 9 ~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~a~~~-g~~~~~~~~g~t~al~~al~al-- 80 (363)
T TIGR01437 9 KVINASGKM--TILGVSTVSDEVADAQKRGAQN---YFEIKELVNKTGEYIANLL-GVEDAVIVSSASAGIAQSVAAV-- 80 (363)
T ss_pred eEEECCcEe--ecCCCCCCCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhh-CCCeEEEEcCHHHHHHHHHHHH--
Confidence 455544433 567764 89999999998765 3345677889999999988 5678999999999999999853
Q ss_pred hcCCc---------------EEEEEeCCCCCCc---hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHH
Q 011959 178 FTGRE---------------RIIKFEGCYHGHA---DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (474)
Q Consensus 178 ~~~~~---------------~ii~~~~~yhg~~---~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~ 239 (474)
..+++ +||+..+.|+.+. ...+...|..+...+. . ..-|++++++.
T Consensus 81 ~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~---~-------------~~~d~~~le~a 144 (363)
T TIGR01437 81 ITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY---A-------------NECSAEQLEAA 144 (363)
T ss_pred hcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC---C-------------CCCCHHHHHHh
Confidence 22333 7777665554321 2233333432211110 0 01289999999
Q ss_pred HhcCCCCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhc
Q 011959 240 FENNKGEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKII 316 (474)
Q Consensus 240 l~~~~~~~a~vi-~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l 316 (474)
+.. ++++++ +++.++.+|.+.+ +++|.++|++||++||+|++|. +. ......+| .|++ +.+|.+
T Consensus 145 i~~---~t~ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~-~~---~~~~~~~g--~D~~~~S~~K~l 211 (363)
T TIGR01437 145 ITE---KTAAILYIKSHHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAE-ED---LQKYYRLG--ADLVIYSGAKAI 211 (363)
T ss_pred cCh---hceEEEEEecCCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCC-Cc---hHHHHHcC--CCEEEEeCCccc
Confidence 974 445555 5555566787888 8899999999999999999996 20 00011123 3666 567988
Q ss_pred CCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCe
Q 011959 317 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (474)
Q Consensus 317 ~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (474)
+ |++.|++++++++++.+...... ....+......+++..++++.+.+ .+..+...++.++++++|.++. ++.
T Consensus 212 ~-gp~~G~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~i~---g~~ 286 (363)
T TIGR01437 212 E-GPTSGLVLGKKKYIEWVKLQSKG-IGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNTLK---GVS 286 (363)
T ss_pred C-CCceEEEEEcHHHHHHHHhccCC-CcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhcCC---CeE
Confidence 5 56799999998888776421100 001111122334455556665543 4455555566667777776641 111
Q ss_pred eEE--eeece---eEEEEEecCCCcCcccccccchHHHHHHHHHHHHCC--eEeccc--CCcceEEe-cCCcHHHHHHHH
Q 011959 395 ICG--GYISG---MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG--VYFAPS--QFEAGFTS-LAHSSDDIQHTI 464 (474)
Q Consensus 395 ~~v--~~~g~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--v~v~~~--~~~~~~~~-~~~t~e~i~~~l 464 (474)
... ...+. ...+.|.... ......++.+.|.++| |+.++. ....+++. .+.+++|++.++
T Consensus 287 ~~~~~~~~~~~~~~~~v~~~~~~----------~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~~~~~e~~~~~ 356 (363)
T TIGR01437 287 ASIVQDEAGRDIARAEIRFDESE----------LGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRSVTGGQLDIIV 356 (363)
T ss_pred EEEecCCCCCcCceEEEEEeccC----------CCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeecCCHHHHHHHH
Confidence 111 11111 1122222100 0112367888888777 777642 22345552 356799999999
Q ss_pred HHHHHHH
Q 011959 465 TAAEKVL 471 (474)
Q Consensus 465 ~~l~~~~ 471 (474)
++|++++
T Consensus 357 ~~l~~~~ 363 (363)
T TIGR01437 357 ERIREIV 363 (363)
T ss_pred HHHHHhC
Confidence 9998763
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=168.21 Aligned_cols=321 Identities=16% Similarity=0.050 Sum_probs=187.1
Q ss_pred CCCCCHHHHHHHHHHHHhc---C--CC-C---CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCc
Q 011959 113 IGHADDQVLAALGETMKKG---T--SF-G---APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRE 182 (474)
Q Consensus 113 lG~~~p~v~~a~~~~~~~~---~--~~-~---~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~ 182 (474)
.|..++.+.+++.+.++.. . .+ . .......++ +.+ +.++ ..++|+|++|+|+++..+++....-.+++
T Consensus 36 ~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~ 113 (406)
T TIGR01814 36 LGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESL-LKL-RLVGAKEDEVVVMNTLTINLHLLLASFYKPTPKR 113 (406)
T ss_pred cCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhh-ccc-cccCCCCCcEEEeCCchHHHHHHHHHhcCCcCCc
Confidence 3445788999998776541 1 11 1 111222333 334 5554 46789999999999999988421111123
Q ss_pred EEEEEeCCCCCCchhHHH----hcCCCCcc--CCCCC-CCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 183 RIIKFEGCYHGHADPFLV----KAGSGVAT--LGLPD-SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 183 ~ii~~~~~yhg~~~~~~~----~~g~~~~~--~~~~~-~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
.+|+.+..-|......+. ..|..+.. ...+. ..+ .-|++++++.++...+++++|+++.+
T Consensus 114 ~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g-------------~~~~~~l~~~~~~~~~~t~lv~~~~v 180 (406)
T TIGR01814 114 YKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEE-------------TLRLEDILDTIEKNGDDIAVILLSGV 180 (406)
T ss_pred cEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCC-------------ccCHHHHHHHHHhcCCCeEEEEEecc
Confidence 344455444443322221 12322100 00000 000 01688888888654457899999999
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC-CccccccCCCCceeehhhhcCCCcceEEEEecHHHHHh
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEM 334 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~ 334 (474)
++++|.+.| +++|.++|++||+++|+|++|+. |. ....+.+|++..+.+..|.+.+|.. |+++..++..+.
T Consensus 181 ~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~~---G~~~id~~~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~~ 252 (406)
T TIGR01814 181 QYYTGQLFD----MAAITRAAHAKGALVGFDLAHAV---GNVPLDLHDWGVDFACWCTYKYLNAGPG-AGAFVHEKHAHT 252 (406)
T ss_pred ccccceecC----HHHHHHHHHHcCCEEEEEccccc---CCcccccccCCCCEEEEcCccccCCCCC-eEEEEehhhhhh
Confidence 999999999 99999999999999999999961 21 2222334444444467799976543 544444333333
Q ss_pred hcCCCCcccc----------c----------CCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 335 VAPAGPMYQA----------G----------TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 335 ~~~~~~~~~~----------~----------t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
+.+....+.+ . ..+.|..++++..++|+.+.+ +...++.+++.+++++.|+++....
T Consensus 253 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~ 332 (406)
T TIGR01814 253 ERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGP 332 (406)
T ss_pred cCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3321000000 0 112455677777789998865 4455666667777777666531100
Q ss_pred C-Cee----EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEec---CCcHHHHHHH
Q 011959 392 G-HAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSL---AHSSDDIQHT 463 (474)
Q Consensus 392 ~-~~~----~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~---~~t~e~i~~~ 463 (474)
+ +.. +....+.++.+.+. . ....+.+.|.++||++.......+|+++ ..|++||+++
T Consensus 333 ~~~~i~~~~~~~~r~~~v~~~~~-~--------------~~~~~~~~L~~~gi~v~~~~~~~iRiS~~~~~nt~~did~l 397 (406)
T TIGR01814 333 PVLTIITPRDHAQRGCQLSLTHP-V--------------PGKAVFQALIKRGVIGDKREPSVIRVAPVPLYNTFVDVYDA 397 (406)
T ss_pred CceEEeCCCChhhcCCeEEEEec-C--------------CHHHHHHHHHHCCEEEeccCCCeEEEechhccCCHHHHHHH
Confidence 1 111 11123445555442 0 1256788888999988755445678864 4599999999
Q ss_pred HHHHHHHH
Q 011959 464 ITAAEKVL 471 (474)
Q Consensus 464 l~~l~~~~ 471 (474)
+++|++++
T Consensus 398 ~~~l~~~~ 405 (406)
T TIGR01814 398 VNVLEEIL 405 (406)
T ss_pred HHHHHHHh
Confidence 99998875
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.4e-18 Score=169.46 Aligned_cols=326 Identities=16% Similarity=0.146 Sum_probs=184.4
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHH-hc-C-----C-CCCC---CHHHHHHHHHHHhhCCCCCeEEEeCCHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMK-KG-T-----S-FGAP---CLLENVLAEMVISAVPSIEMVRFVNSGTEA 167 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~-~-----~-~~~~---~~~~~~la~~l~~~~~~~~~v~~~~sGseA 167 (474)
++.|++..+- ++ -+|.|++++.+.+. +. . . ++.. ..++...++.+++.++.....++.+||++|
T Consensus 19 ~~~~~~~~~~--~~---~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a 93 (402)
T cd00378 19 RETLELIASE--NF---TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQA 93 (402)
T ss_pred HhCeeeeccC--Cc---CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeecCCcHHH
Confidence 3456665442 33 38999999987653 21 1 1 1111 122223445566777522223444579999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhH----HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPF----LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~----~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (474)
+..+++.. ...+++|++.++.|.+..... +...|..+.....+..+ +.. .-|++++++.+...
T Consensus 94 ~~~~l~~l--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~---~id~~~l~~~i~~~ 160 (402)
T cd00378 94 NLAVYFAL--LEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDP--------ETG---LIDYDALEKMALEF 160 (402)
T ss_pred HHHHHHHh--cCCCCEEEEecCccCccccccccccccccceeEEEecCCcCc--------ccC---CcCHHHHHHHHHhC
Confidence 99999842 345677888888876543211 11122111111110000 000 01899999988643
Q ss_pred CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCcee--ehhhhcCCC
Q 011959 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGG 319 (474)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G 319 (474)
++++|++.+.. .|...+ +++|.++|++||++||+||+| .|+ ..|... . .+. ..|++ +++|++ +|
T Consensus 161 --~~~~v~~~~~~--~~~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~-~-~~~-~~dv~~~s~sK~l-~G 228 (402)
T cd00378 161 --KPKLIVAGASA--YPRPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFP-N-PLP-GADVVTTTTHKTL-RG 228 (402)
T ss_pred --CCCEEEecCcc--cCCCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCC-C-ccc-CCcEEEeccccCC-CC
Confidence 35556654332 234445 999999999999999999997 666 333211 1 111 34654 689999 67
Q ss_pred cceEEEEecH-HHHHhhcCCCCcccccCCCC-ChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCe
Q 011959 320 LPVGAYGGRR-DIMEMVAPAGPMYQAGTLSG-NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (474)
Q Consensus 320 ~~iG~~~~~~-~i~~~~~~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (474)
+|.||+++++ ++++.+...... +.++. ++..++++..++..... ++..+++.++.+++++.|.+. ++.
T Consensus 229 ~~gg~i~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~ 301 (402)
T cd00378 229 PRGGLILTRKGELAKKINSAVFP---GLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER----GFK 301 (402)
T ss_pred CCceEEEeccHHHHHHHHHHhCc---cccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC----CCe
Confidence 8999998877 888877532111 11222 22333333334443322 455667777777777777664 322
Q ss_pred eE-EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------CcceEEec------CCcH
Q 011959 395 IC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSL------AHSS 457 (474)
Q Consensus 395 ~~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------~~~~~~~~------~~t~ 457 (474)
.. .+..+.++++.+..... ....+.+.|.++||.+.+.. ...+|++. .+++
T Consensus 302 ~~~~~~~~~~v~v~~~~~~~------------~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~ 369 (402)
T cd00378 302 VVSGGTDNHLVLVDLRPKGI------------TGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGE 369 (402)
T ss_pred EeecCCCCeEEEEeCCccCC------------CHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCH
Confidence 21 12346677776642110 11356667788899996431 23456632 4579
Q ss_pred HHHHHHHHHHHHHHhh
Q 011959 458 DDIQHTITAAEKVLRQ 473 (474)
Q Consensus 458 e~i~~~l~~l~~~~~~ 473 (474)
+|++++++.|.+++++
T Consensus 370 ~di~~~~~~l~~~~~~ 385 (402)
T cd00378 370 EEMEEIADFIARALKD 385 (402)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-18 Score=170.97 Aligned_cols=351 Identities=14% Similarity=0.051 Sum_probs=191.6
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHh
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLA 175 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~a 175 (474)
..|..||||.+-.++ ..+.++..+++..+...+.......+|.+.+++++ +.+.+++++||++|+..+++
T Consensus 17 ~~~~v~iDlltds~t-------~ams~~~~~a~~~gd~~Y~~~~g~~~Leeaia~~~-g~~~vv~t~~Gt~Al~la~~-- 86 (431)
T cd00617 17 RSEDVYIDLLTDSGT-------GAMSDYQWAAMMLGDEAYAGSKSFYDLEDAVQDLF-GFKHIIPTHQGRGAENILFS-- 86 (431)
T ss_pred CCCCcCCCCCCCCCc-------HHHHHHHHHHHHhCCCccCCCCCHHHHHHHHHHHH-CCCeEEEcCCHHHHHHHHHH--
Confidence 346678898876432 45666666666554322223334456666677666 67899999999999999998
Q ss_pred HhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-CHHHHHHHHhcC-CCCeEEEEEc
Q 011959 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENN-KGEIAAIILE 253 (474)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-d~~~le~~l~~~-~~~~a~vi~e 253 (474)
++.+++++|..++.|..+ .......|..+.......... + .....+.+| |+++|++.+++. .+++++|+++
T Consensus 87 -al~~pGD~V~~~~~f~~~-~~~i~~~Ga~pv~v~i~~~~~-~----~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~ 159 (431)
T cd00617 87 -ILLKPGRTVPSNMHFDTT-RGHIEANGAVPVDLVIDEAHD-A----QELIPFKGNIDVAKLEKLIDEVGAENIPYIVLT 159 (431)
T ss_pred -HhCCCCCEEccCCcccch-HHHHHhCCCEeEEEecccccc-c----ccccCCCCCcCHHHHHHHhCcccCCCccEEEEE
Confidence 445555555555555443 334444444322211110000 0 000011122 899999999854 2457788887
Q ss_pred cccCCC-CcccCCHHHHHHHHHHHHHhCCEEEEecccc-C---c---ccCCCccccccCCCCceeehhhhcC-CCcc---
Q 011959 254 PVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEVMT-G---F---RLAYGGAQEYFGVTPDLTTLGKIIG-GGLP--- 321 (474)
Q Consensus 254 p~~~~~-G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g---~---r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~--- 321 (474)
..+|.+ |...+ .+.+++|+++|++||++||.|+++. + | |.+.........+...+.++||++. +|++
T Consensus 160 ~p~N~~gG~~~s-~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~ 238 (431)
T cd00617 160 ITNNTAGGQPVS-MANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGL 238 (431)
T ss_pred CCcCCCCCccCC-HHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCC
Confidence 666654 66554 5559999999999999999999974 1 1 1110000000011112234555555 4444
Q ss_pred ---eEEEEecH-HHHHhhcCCCC-cccccCCCCChHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee
Q 011959 322 ---VGAYGGRR-DIMEMVAPAGP-MYQAGTLSGNPLAMTAGIH-TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (474)
Q Consensus 322 ---iG~~~~~~-~i~~~~~~~~~-~~~~~t~~~~~~~~aaa~a-al~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (474)
.|++++++ ++++.++.... .....++++...-+.++++ +|+...+.+..++..++.+++.+.|++. +++.
T Consensus 239 ~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r~~l~~~L~~~----G~~v 314 (431)
T cd00617 239 VNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYLGDRLDEA----GVPI 314 (431)
T ss_pred CccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC----CCCc
Confidence 45778876 58887763211 1112233333223333333 6654322333444444557777777665 4444
Q ss_pred EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC-----------------CcceEE---ecC
Q 011959 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------------FEAGFT---SLA 454 (474)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-----------------~~~~~~---~~~ 454 (474)
..+..|.+++++...- .+...++.-....|+..|+ +.||.+...| ...+|+ .-.
T Consensus 315 ~~P~Ggh~v~~d~~~~-----~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~ 389 (431)
T cd00617 315 VEPAGGHAVFIDAREF-----LPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRV 389 (431)
T ss_pred cCCCcceEEEEEhHHh-----cCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccc
Confidence 4455666666665321 0000011112355664444 6678754211 123455 246
Q ss_pred CcHHHHHHHHHHHHHHHhh
Q 011959 455 HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 455 ~t~e~i~~~l~~l~~~~~~ 473 (474)
.|.+++|.+.+.+.+++++
T Consensus 390 ~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 390 YTQDHMDYVAAAVIALYER 408 (431)
T ss_pred cCHHHHHHHHHHHHHHHhh
Confidence 7999999999999988753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=156.98 Aligned_cols=306 Identities=14% Similarity=0.095 Sum_probs=194.2
Q ss_pred CCCHHHHHHHHHHHhhCC-----CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCC
Q 011959 136 APCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG 210 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~-----~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~ 210 (474)
+....++++|+.+...-. ++++++++++++.|+++..-. ...+++..++..|.|.|.....---+|..+.++.
T Consensus 122 Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fc--LadpgdafLvPtPyY~gfdrdl~~rTgveivpv~ 199 (471)
T KOG0256|consen 122 GLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFC--LADPGDAFLVPTPYYPGFDRDLRWRTGVEIVPVH 199 (471)
T ss_pred CchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHH--hcCCCceeeecCCCCCcccccceeccCceEEEEE
Confidence 456677777777776543 578999999999999987763 2345677777777777764333333343333222
Q ss_pred CCCCCCCCCCCCCceEEccCCCHHHHHHHHhc---CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 011959 211 LPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287 (474)
Q Consensus 211 ~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DE 287 (474)
.....++ .+ +.++||+++.+ .+.+++.||+..++|+-|.+.++++ |..+.+++.++++-||+||
T Consensus 200 c~Ss~~f---------~i---tv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~-L~~ll~Fa~~kniHvI~DE 266 (471)
T KOG0256|consen 200 CSSSNGF---------QI---TVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEE-LISLLNFASRKNIHVISDE 266 (471)
T ss_pred eecCCCc---------cc---cHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHH-HHHHHHHHhhcceEEEeeh
Confidence 2111111 00 68888887764 2347888888777788888887777 9999999999999999999
Q ss_pred cccCc-ccCCCc--ccccc---CCCCce----eehhhhcC-CCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHH
Q 011959 288 VMTGF-RLAYGG--AQEYF---GVTPDL----TTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMT 355 (474)
Q Consensus 288 v~~g~-r~g~~~--~~~~~---g~~pdi----~t~sK~l~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~a 355 (474)
||+|- .....| ..+.. ...+|. .++||-|| +|+|+|.+.. ++++.....+ +..+ ...++..|.
T Consensus 267 Iya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~k---mssf--~~vSs~tQ~ 341 (471)
T KOG0256|consen 267 IYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATK---MSSF--GLVSSQTQY 341 (471)
T ss_pred hhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHH---Hhhc--cCCcHHHHH
Confidence 99765 332222 11111 124553 37999999 8999999955 6667777663 2222 234556666
Q ss_pred HHHHHHHH---hcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHH
Q 011959 356 AGIHTLKR---LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARF 430 (474)
Q Consensus 356 aa~aal~~---~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 430 (474)
-....|.. .+. .+...+++.+.+++.++|++ .+++.--.+.|+|+|+++..--.+ ...+.--++
T Consensus 342 ~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~----lgI~cl~s~AGlF~wvDlr~lL~s-------~tfe~El~L 410 (471)
T KOG0256|consen 342 LLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKA----LGIPCLKSNAGLFCWVDLRKLLTS-------LTFEGELEL 410 (471)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHh----cCCceeecCCeeEEEEEhHHhcCc-------CChHHHHHH
Confidence 55554432 000 22334444555555555554 466767788899999998542100 011112356
Q ss_pred HHHHHHC-CeEecccC------CcceEEecCCc-HHHHHHHHHHHHHHHh
Q 011959 431 YRGMLEE-GVYFAPSQ------FEAGFTSLAHS-SDDIQHTITAAEKVLR 472 (474)
Q Consensus 431 ~~~l~~~-Gv~v~~~~------~~~~~~~~~~t-~e~i~~~l~~l~~~~~ 472 (474)
++.++++ ++.+.|+. ++++|++++.. ++.++-++++|..++.
T Consensus 411 w~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 411 WERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLD 460 (471)
T ss_pred HHHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 6777776 99999984 34678876554 4555559999988764
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-17 Score=168.60 Aligned_cols=327 Identities=16% Similarity=0.124 Sum_probs=200.9
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-C-CCCC-------CHHHHHHHHHHHhhCCC--CCeEEEeCCHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-S-FGAP-------CLLENVLAEMVISAVPS--IEMVRFVNSGTEA 167 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~-~~~~-------~~~~~~la~~l~~~~~~--~~~v~~~~sGseA 167 (474)
..|+|..+. |..++.|++++.+.+.... . .... .+...++.+.++++++. .++|+|++|++++
T Consensus 33 ~iyLd~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a 106 (424)
T PLN02855 33 LVYLDNAAT------SQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEA 106 (424)
T ss_pred eEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHH
Confidence 357775332 4467889999988776521 1 1111 12245777888888862 4689999999999
Q ss_pred HHHHHHHh-H-hhcCCcEEEEEeCCCCCCchhHHH---hcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhc
Q 011959 168 CMGVLRLA-R-AFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (474)
Q Consensus 168 ~~~al~~a-r-~~~~~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (474)
+..+++.. . .+..+++|++.+..|++....... ..|..+..++...... .|++++++.++.
T Consensus 107 l~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~--------------~~~~~l~~~i~~ 172 (424)
T PLN02855 107 INLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEV--------------LDVEQLKELLSE 172 (424)
T ss_pred HHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCC--------------cCHHHHHHHhcc
Confidence 99988732 1 234467788877776654332221 2233222211110000 178999998863
Q ss_pred CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccCCCccccccCCCCcee--ehhhhcCCC
Q 011959 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGG 319 (474)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G 319 (474)
++++|++..+++++|.+.| +++|.++|++||+++|+|++|. |.. ..... ...+|++ +++|.+| .
T Consensus 173 ---~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~~g~~---~~~~~--~~~~d~~~~s~~K~~g-p 239 (424)
T PLN02855 173 ---KTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQSVPHM---PVDVQ--TLGADFLVASSHKMCG-P 239 (424)
T ss_pred ---CceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhhcCCc---CCCch--hcCCCEEEeecccccC-C
Confidence 6788888888899999999 8999999999999999999994 211 11122 2235765 6889554 2
Q ss_pred cceEEEEecHHHHHhhcCCCCc-------c-----------cccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHH
Q 011959 320 LPVGAYGGRRDIMEMVAPAGPM-------Y-----------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITG 378 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~~-------~-----------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~ 378 (474)
..+|++++++++++.+.+.... + .+...+.+..+.++..++++.+.+ +...++..++.+
T Consensus 240 ~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~ 319 (424)
T PLN02855 240 TGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGT 319 (424)
T ss_pred CccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 2489999999988776531000 0 001112345566666677877654 344555666666
Q ss_pred HHHHHHHHHhhhcCCeeE----EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC--------
Q 011959 379 ELTQGIIDAGKKAGHAIC----GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ-------- 445 (474)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~----v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~-------- 445 (474)
++++.|+++. ...+... ....+.++.+.+... ...++.+.|.++ ||.+..+.
T Consensus 320 ~l~~~L~~~~-g~~i~~~~~~~~~~r~~~v~~~~~~~--------------~~~~v~~~L~~~~gI~v~~g~~c~~~~~~ 384 (424)
T PLN02855 320 YLYEKLSSVP-GVRIYGPKPSEGVGRAALCAFNVEGI--------------HPTDLSTFLDQQHGVAIRSGHHCAQPLHR 384 (424)
T ss_pred HHHHHHhcCC-CEEEeCCCcccccCcccEEEEEECCc--------------CHHHHHHHhcccCCEEEechhhhhHHHHH
Confidence 6666665431 1111100 012244555554211 124677888777 99987542
Q ss_pred ----CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 446 ----FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 ----~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
...+|++ ...|++|++++++.|+++++.
T Consensus 385 ~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~ 418 (424)
T PLN02855 385 YLGVNASARASLYFYNTKEEVDAFIHALKDTIAF 418 (424)
T ss_pred HhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 1246765 567999999999999998764
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-17 Score=163.07 Aligned_cols=325 Identities=22% Similarity=0.245 Sum_probs=214.9
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhc---CCCCC------CCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG---TSFGA------PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEAC 168 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~~------~~~~~~~la~~l~~~~~-~-~~~v~~~~sGseA~ 168 (474)
.|+|..++ +..+..|++++.+..... .+.+. .....++..+.++++.+ . .+.|+||.+.|+|+
T Consensus 24 vylD~aa~------~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~al 97 (405)
T COG0520 24 VYLDNAAT------SQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEAL 97 (405)
T ss_pred EEecCccc------ccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHH
Confidence 57776654 236889999999987652 11121 13456677888888886 4 48899999999999
Q ss_pred HHHHHHh-HhhcCCcEEEEEeCCCCCCchhHHHhc---CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC
Q 011959 169 MGVLRLA-RAFTGRERIIKFEGCYHGHADPFLVKA---GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (474)
Q Consensus 169 ~~al~~a-r~~~~~~~ii~~~~~yhg~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (474)
..+.... +....+++||+.+--+|.......... |..+...+.. ..+.. +++++++++.
T Consensus 98 n~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~-~~g~~-------------~~~~~~~~i~--- 160 (405)
T COG0520 98 NLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD-DDGLL-------------DLDALEKLIT--- 160 (405)
T ss_pred HHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecC-CCCCc-------------CHHHHHHhcC---
Confidence 9988832 224556889998888888776665544 3222221111 11211 6888888776
Q ss_pred CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehh--hhcCCCcce
Q 011959 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPV 322 (474)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~s--K~l~~G~~i 322 (474)
+++++|.+..+.|.+|.+.| +++|.++|+++|+++++|-+|+- + ....+.-....|.+.|| |.+.|.-.+
T Consensus 161 ~~Tklvais~vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~~---~-h~~idv~~l~~Df~afsgHKwl~gP~Gi 232 (405)
T COG0520 161 PKTKLVALSHVSNVTGTVNP----VKEIAELAHEHGALVLVDAAQAA---G-HLPIDVQELGCDFLAFSGHKWLLGPTGI 232 (405)
T ss_pred CCceEEEEECccccccccch----HHHHHHHHHHcCCEEEEECcccc---C-ccCCCchhcCCCEEEEcccccccCCCce
Confidence 47899999999999999999 99999999999999999999951 1 11122223356777665 867654459
Q ss_pred EEEEecHHHHHhhcCCC---Ccc------cccCC----------CCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHH
Q 011959 323 GAYGGRRDIMEMVAPAG---PMY------QAGTL----------SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGEL 380 (474)
Q Consensus 323 G~~~~~~~i~~~~~~~~---~~~------~~~t~----------~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l 380 (474)
|.+.+++++++.+.+.. ... ...++ +.|..+..+..++++.+++ +...++.+++.+++
T Consensus 233 GvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~ 312 (405)
T COG0520 233 GVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYL 312 (405)
T ss_pred EEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999998875310 000 00111 2244555555677777765 44556666666666
Q ss_pred HHHHHHHhhhcCCeeEEe---eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcc---------
Q 011959 381 TQGIIDAGKKAGHAICGG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA--------- 448 (474)
Q Consensus 381 ~~~L~~~~~~~~~~~~v~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~--------- 448 (474)
.++|.++. ++....+ ..+.++.|.+.... ..++...|.++||.++.+..+.
T Consensus 313 ~~~L~~~~---~v~i~g~~~~~r~~~vsF~v~~~~--------------~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~ 375 (405)
T COG0520 313 LEGLSELP---GVEIYGPPDADRGGIVSFNVKGIH--------------PHDVATLLDEKGIAVRAGHHCAQPLHRLLGV 375 (405)
T ss_pred HHHHhcCC---CeEEecCCcccCceEEEEEeCCCC--------------HHHHHHHHHhCCeEEEeccccccHHHHhcCC
Confidence 66666541 1222222 24666666664321 2578899999998888764322
Q ss_pred ---eEEe--cCCcHHHHHHHHHHHHHHHh
Q 011959 449 ---GFTS--LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 449 ---~~~~--~~~t~e~i~~~l~~l~~~~~ 472 (474)
+|++ +..|+||||++++.|+++.+
T Consensus 376 ~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 376 DATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred CCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 5664 66799999999999998753
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-17 Score=165.93 Aligned_cols=318 Identities=15% Similarity=0.126 Sum_probs=183.3
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCCC-----CCHHHHHH----HHHHHhhCCC-CCeEEEeCCHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGA-----PCLLENVL----AEMVISAVPS-IEMVRFVNSGTE 166 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~~-----~~~~~~~l----a~~l~~~~~~-~~~v~~~~sGse 166 (474)
+.+|++.++- ++ .+|+|++++.+.+... ..... ......++ .+.+++.++. ...+ +++||++
T Consensus 25 ~~~~~l~~~~--n~---~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i-~~~sgt~ 98 (416)
T PRK00011 25 EEHIELIASE--NF---VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANV-QPHSGSQ 98 (416)
T ss_pred hcCeeeeccc--Cc---CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceee-ecCCchH
Confidence 4557777662 22 5899999987765321 11110 11222233 3467777752 2334 4467999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhH--HHhcCCCCccCCCCCCCCCCCCCCCceEEcc------CCCHHHHHH
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAP------FNDVSALEN 238 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~------~~d~~~le~ 238 (474)
|+..+++.. ..+++.|++..++|.+..... ....+.+. ++..++ ..|++++++
T Consensus 99 al~~~l~~l--~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~-----------------~~~~~~~~~~~~~~d~~~l~~ 159 (416)
T PRK00011 99 ANAAVYFAL--LKPGDTILGMDLAHGGHLTHGSPVNFSGKLY-----------------NVVSYGVDEETGLIDYDEVEK 159 (416)
T ss_pred HHHHHHHHh--cCCCCEEEEeccccCCcccccccccccccee-----------------eEeecCcCcccCCcCHHHHHH
Confidence 999988842 345677888877775532111 11111110 111111 128999999
Q ss_pred HHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCcee--ehhh
Q 011959 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGK 314 (474)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~--t~sK 314 (474)
.++++ ++++|++.. ++.|...+ +++|.++|++||+++|+||+| .|+ ..|.. . ...+ ..|++ +++|
T Consensus 160 ~i~~~--~~k~v~~~~--~~~~~~~~----~~~I~~la~~~~~~livD~a~~~g~~~~g~~-~-~~~~-~~di~~~S~~K 228 (416)
T PRK00011 160 LALEH--KPKLIIAGA--SAYSRPID----FKRFREIADEVGAYLMVDMAHIAGLVAAGVH-P-SPVP-HADVVTTTTHK 228 (416)
T ss_pred HHHhc--CCCEEEECC--CcCCCccC----HHHHHHHHHHcCCEEEEECcchhcccccCcc-C-CCCC-CCcEEEecCCc
Confidence 98743 456666642 22344556 899999999999999999998 454 32211 0 1112 34655 6899
Q ss_pred hcCCCcceEEEEec-HHHHHhhcCCCCcccccCCCC-ChHHHHHHHHH-HHHhcC--CCHHHHHHHHHHHHHHHHHHHhh
Q 011959 315 IIGGGLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSG-NPLAMTAGIHT-LKRLKE--PGTYEYLNKITGELTQGIIDAGK 389 (474)
Q Consensus 315 ~l~~G~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~-~~~~~aaa~aa-l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~ 389 (474)
++ +|++.|+++++ +++++.+...... +.++. ....+++...+ ++.+++ ++..++++++.+++++.|++.
T Consensus 229 ~l-~g~~gg~i~~~~~~~~~~l~~~~~~---~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 302 (416)
T PRK00011 229 TL-RGPRGGLILTNDEELAKKINSAVFP---GIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER-- 302 (416)
T ss_pred CC-CCCCceEEEeCCHHHHHHHHHHhCc---cccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--
Confidence 98 46889999885 6888877632111 11222 22233333333 343332 456777888888888888764
Q ss_pred hcCCeeEE-eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------CcceEEe------
Q 011959 390 KAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTS------ 452 (474)
Q Consensus 390 ~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------~~~~~~~------ 452 (474)
++.... .....++++.+.+.. .....+.+.|.++||.+.... ...+|+.
T Consensus 303 --g~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~ 368 (416)
T PRK00011 303 --GFRVVSGGTDNHLVLVDLRSKG------------LTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITT 368 (416)
T ss_pred --CCeeeecCCCCeEEEEeCcccC------------CCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhh
Confidence 321111 122355566553210 012467788889999987321 1235552
Q ss_pred cCCcHHHHHHHHHHHHHHHh
Q 011959 453 LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~~ 472 (474)
..+|++|++++++.|++++.
T Consensus 369 ~~~t~~di~~l~~~l~~~~~ 388 (416)
T PRK00011 369 RGFKEAEMKEIAELIADVLD 388 (416)
T ss_pred cCcCHHHHHHHHHHHHHHHh
Confidence 25689999999999998865
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-18 Score=153.31 Aligned_cols=328 Identities=17% Similarity=0.165 Sum_probs=204.9
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhc
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 179 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~ 179 (474)
..+|+-|- .+--+..++++++.++......|| .++...+|.++.++.+ +.|..+|++||+.+|..+++. ...
T Consensus 22 ~~vDLRSD----TvT~PTdeMr~am~eA~vgDdVyG-eD~tt~rLE~~vA~l~-GKEAgLFv~SGTmgNllaIm~--Hc~ 93 (384)
T KOG1368|consen 22 RSVDLRSD----TVTVPTDEMRRAMAEASVGDDVYG-EDPTTNRLEQRVAELF-GKEAGLFVPSGTMGNLLAIMV--HCH 93 (384)
T ss_pred eccccccc----cccCChHHHHHHHhhcccCccccc-CCccHHHHHHHHHHHh-CccceeeecccccccHHHHHH--Hhc
Confidence 34566554 333356788898888764434454 3344466777777777 889999999999999999995 333
Q ss_pred CC-cEEEEEeCC-CCCCchhHHHh-cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC-----CCCeEEEE
Q 011959 180 GR-ERIIKFEGC-YHGHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-----KGEIAAII 251 (474)
Q Consensus 180 ~~-~~ii~~~~~-yhg~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~-----~~~~a~vi 251 (474)
.+ ..||+=+.+ -|-|-.+.++. +|..+.++. +...+ +-|++++|+.+... .+.+++|.
T Consensus 94 ~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~-~e~dg-------------tm~ledIe~~ir~~~GD~H~p~T~LIc 159 (384)
T KOG1368|consen 94 QRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVK-NENDG-------------TMDLEDIEAAIRVPKGDCHMPPTKLIC 159 (384)
T ss_pred CCCceEEeccchheeehhccChhhhccceeEeee-eCCCC-------------eeeHHHHHHhhcCCCCCccCCCceEEE
Confidence 33 444443322 22222222221 111110000 11111 11799999998742 23578999
Q ss_pred EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc--ccCCCccccccCCCCce--eehhhhcCCCcceEEE-E
Q 011959 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF--RLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAY-G 326 (474)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~--r~g~~~~~~~~g~~pdi--~t~sK~l~~G~~iG~~-~ 326 (474)
+|..++++|....|-||+.++.+||++||+-|..|-+.. | -....-....+.-..|- +||||++|+ |+|-+ +
T Consensus 160 lENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi-~NAavasgV~vk~i~~~fDSVsiCLSKglgA--PVGSViV 236 (384)
T KOG1368|consen 160 LENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI-FNAAVASGVPVKKICSAFDSVSICLSKGLGA--PVGSVIV 236 (384)
T ss_pred eeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhh-hhHHHHcCCCHHHHHHhhhhhhhhhhccCCC--CcccEEE
Confidence 999888877666677889999999999999999996653 1 00111111222223343 489999986 78877 8
Q ss_pred ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-eeceeEE
Q 011959 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFG 405 (474)
Q Consensus 327 ~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~ 405 (474)
|++++++..+..++. .++-+...-+.++|++.+|+. ....+.+-.++...+.+.++... .+...++ -..+|..
T Consensus 237 G~k~FI~kA~~~RKa-lGGGmRQsGvLaaaaLval~~--~~~~L~~dHk~A~~lAe~~~~~~---~i~v~v~a~etNiv~ 310 (384)
T KOG1368|consen 237 GSKDFIDKARHFRKA-LGGGMRQSGVLAAAALVALDE--NVPLLRADHKRAKELAEYINTPE---EIRVEVPAVETNIVN 310 (384)
T ss_pred ccHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhcccc---ceeeecchhhcceee
Confidence 899988766522122 333445566777777777753 23355556666666666665321 1444555 4566666
Q ss_pred EEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHH
Q 011959 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~ 470 (474)
+++.... ...+.+++.+.++||++.++.....|+ ...+|+++++.++..+.+.
T Consensus 311 ~~l~q~~------------~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~~k~ 365 (384)
T KOG1368|consen 311 MVLCQAR------------LTAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYVKSVLSKK 365 (384)
T ss_pred eeccccc------------CCHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHHHHHHHHH
Confidence 6664432 224788999999999998875444555 5677999999999999543
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-16 Score=160.07 Aligned_cols=321 Identities=16% Similarity=0.141 Sum_probs=183.3
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCC---CCCHHHHHHHHHHHh---hCC--CCCeEEEeCCHHHHHHH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVIS---AVP--SIEMVRFVNSGTEACMG 170 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~---~~~~~~~~la~~l~~---~~~--~~~~v~~~~sGseA~~~ 170 (474)
|+|..+. ...++.|++++.+.+... ...+ ++......+.+.+.+ ..+ ..++|+|++|++|++..
T Consensus 2 yld~aa~------~~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~ 75 (382)
T TIGR03403 2 YLDNNAT------TMLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNW 75 (382)
T ss_pred cccCcCC------CCCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHH
Confidence 5665544 225789999999988752 1111 111222333333332 332 35799999999999999
Q ss_pred HHHHhHh--h-cC-CcEEEEEeCCCCCCchhH--HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC
Q 011959 171 VLRLARA--F-TG-RERIIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (474)
Q Consensus 171 al~~ar~--~-~~-~~~ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (474)
+++.... + .+ +++|++....|+...... +...|..+..++... .+. -|++++++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~-~g~-------------~d~~~l~~~i~~-- 139 (382)
T TIGR03403 76 VLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINE-QGT-------------ITAEQVREAITE-- 139 (382)
T ss_pred HHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCC-CCC-------------CCHHHHHHhccc--
Confidence 9985321 1 23 455666654443322221 112233222211110 010 178889888863
Q ss_pred CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehh--hhcCCCcce
Q 011959 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPV 322 (474)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~s--K~l~~G~~i 322 (474)
++++|++..++|++|.+.| +++|.++|++||+++|+|++|. + |. ...+......|++++| |.+|+ ..+
T Consensus 140 -~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~--g~-~~~~~~~~~~D~~~~s~~K~~gp-~G~ 209 (382)
T TIGR03403 140 -KTALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-I--GK-IPVDVQKAGVDFLSFSAHKFHGP-KGV 209 (382)
T ss_pred -CCeEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh-c--CC-CccCccccCCCEEEEcchhhCCC-Cce
Confidence 4678888888889999999 8899999999999999999985 1 11 0111112346777655 97652 127
Q ss_pred EEEEecHHHHHhhcCC----CCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE
Q 011959 323 GAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (474)
Q Consensus 323 G~~~~~~~i~~~~~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (474)
|++..+++. .+.+. .........+.|..++.++.++++.+.+ +...+++++..++++++|.+ .+.+..
T Consensus 210 g~l~vr~~~--~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~----~~~~~~ 283 (382)
T TIGR03403 210 GGLYIRKGV--ELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLE----LPDVFV 283 (382)
T ss_pred EEEEECCCC--CCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc----CCCEEE
Confidence 888776653 11110 0000011345677777777888876654 23334455555555555543 221111
Q ss_pred Eee----eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----------------------Ccce
Q 011959 397 GGY----ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAG 449 (474)
Q Consensus 397 v~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~ 449 (474)
+.+ .+.++.+.+... ....+...|.++||.++.+. ...+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~i 349 (382)
T TIGR03403 284 VGDREHRVPNTILISIKGV--------------EGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAI 349 (382)
T ss_pred ECCCCCCcCCEEEEEeCCC--------------CHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeE
Confidence 111 123434443210 12456667888999998531 1236
Q ss_pred EEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 450 FTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 450 ~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
|++ ...|++|||++++.|++++++
T Consensus 350 R~s~~~~~t~~did~~~~~l~~~~~~ 375 (382)
T TIGR03403 350 RLSLSRFTTEEEIDYTIEVFKKAVQR 375 (382)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 765 566999999999999988764
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.3e-18 Score=168.56 Aligned_cols=243 Identities=15% Similarity=0.122 Sum_probs=159.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++...+|.+++++++ +.+.+++++||++|+..++.. ....++.|++.++.|.+. ...+....
T Consensus 74 ~~Pt~~~LE~~lA~l~-g~~~~l~~~sG~~Ai~~al~a--l~~~GD~Vl~~~~~Y~~~-~~~~~~~~------------- 136 (418)
T PLN02242 74 FNPTVLNLGRQMAALE-GTEAAYCTASGMSAISSVLLQ--LCSSGGHVVASNTLYGGT-HALLAHFL------------- 136 (418)
T ss_pred CChhHHHHHHHHHHHh-CCCeEEEEccHHHHHHHHHHH--HhCCCCEEEEcCCcHHHH-HHHHHHhh-------------
Confidence 5677889999999888 667888999999999999984 234567787777766443 22221100
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (474)
.+..+.++..++..|+++++++++.+ ++++|++|.++|++|.+.+ +++|.++|++||++||+||+|+.+...
T Consensus 137 -~~~~G~~~~~~d~~d~e~l~~~i~~~--~tklV~lesp~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~~~~- 208 (418)
T PLN02242 137 -PRKCNITTTFVDITDLEAVKKAVVPG--KTKVLYFESISNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPMVLS- 208 (418)
T ss_pred -hhccCceEEEcCCCCHHHHHHhcCcC--CCEEEEEecCCCCCCcccC----HHHHHHHHHHhCCEEEEECCCCccCCC-
Confidence 00111234445556899999988632 4789999999999999987 999999999999999999999644211
Q ss_pred CccccccCCCCceeehhhhcCC-Ccc-eEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHH
Q 011959 297 GGAQEYFGVTPDLTTLGKIIGG-GLP-VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYL 373 (474)
Q Consensus 297 ~~~~~~~g~~pdi~t~sK~l~~-G~~-iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~ 373 (474)
...+|...-+.++||.+++ |++ .||+++++++++.+....... ...++.++..+.|++.++. +.. +..+++.
T Consensus 209 ---~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~-~~~~g~~~~~~~A~l~~~~-l~tl~~r~~~~ 283 (418)
T PLN02242 209 ---PARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGA-LMLLGPTMNPKVAFELSER-LPHLSLRMKEH 283 (418)
T ss_pred ---HHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhh-hhccCCCCCHHHHHHHHcC-CCcHHHHHHHH
Confidence 1122332223379999984 676 588899999888876321110 1122334445555554432 222 3455677
Q ss_pred HHHHHHHHHHHHHHhhhcCCee------------EE---eeeceeEEEEEe
Q 011959 374 NKITGELTQGIIDAGKKAGHAI------------CG---GYISGMFGFFFT 409 (474)
Q Consensus 374 ~~~~~~l~~~L~~~~~~~~~~~------------~v---~~~g~~~~i~~~ 409 (474)
.++.+++.+.|++...+.-.+. .. .+.|.|+.|++.
T Consensus 284 ~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~ 334 (418)
T PLN02242 284 CRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMD 334 (418)
T ss_pred HHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEEC
Confidence 8888888888887631110010 11 256888899884
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.3e-17 Score=163.20 Aligned_cols=255 Identities=16% Similarity=0.122 Sum_probs=154.8
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CCC-CC------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG-AP------CLLENVLAEMVISAVP-SIEMVRFVNSGTEAC 168 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~-~~------~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~ 168 (474)
+.|+|..+. +..++.|++++.+.+.... ... .+ .+...++.+.++++++ +.+.++|++|+++++
T Consensus 4 ~~yld~aa~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~ 77 (402)
T TIGR02006 4 PIYLDYAAT------TPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESN 77 (402)
T ss_pred cEEeeCCcC------CCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHH
Confidence 468887654 2358999999988875421 111 11 1335567778888886 467899999999999
Q ss_pred HHHHHHhHh-hc-CCcEEEEEeCCCCCCchhHHH---hcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC
Q 011959 169 MGVLRLARA-FT-GRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (474)
Q Consensus 169 ~~al~~ar~-~~-~~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (474)
+.+++.... .. +++.||+... .|........ ..|..+..++.. ..+ ..|++++++.+++
T Consensus 78 ~~~l~~l~~~~~~~g~~Vi~~~~-~h~s~~~~~~~~~~~g~~v~~v~~~-~~~-------------~~d~~~l~~~l~~- 141 (402)
T TIGR02006 78 NLAIKGIAHFYKSKGNHIITSKT-EHKAVLDTCRYLEREGFEVTYLPPK-SNG-------------LIDLEELKAAIRD- 141 (402)
T ss_pred HHHHHHHHHhhcCCCCEEEECCC-ccHHHHHHHHHHHhcCCEEEEEccC-CCC-------------cCCHHHHHHhcCC-
Confidence 999875432 22 3455655544 4544332221 123222221111 001 0178999988863
Q ss_pred CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehh--hhcCCCcc
Q 011959 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLP 321 (474)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~s--K~l~~G~~ 321 (474)
++++|++..+++++|.+.| +++|.++|++||+++|+|++|+ + |.. ..+..+..+|++++| |.+| ...
T Consensus 142 --~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~--g~~-~~~~~~~~~D~~~~s~~K~~g-p~G 210 (402)
T TIGR02006 142 --DTILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-V--GKI-PINVNELKVDLMSISGHKIYG-PKG 210 (402)
T ss_pred --CCEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-c--CCc-ccCccccCCCEEEEehhhhcC-CCc
Confidence 5688888889899999998 9999999999999999999995 1 111 112223467888777 9765 233
Q ss_pred eEEEEecHHHHHhhcCCCCc----ccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHH
Q 011959 322 VGAYGGRRDIMEMVAPAGPM----YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIID 386 (474)
Q Consensus 322 iG~~~~~~~i~~~~~~~~~~----~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~ 386 (474)
+|+++.+++....+.+.... ......+.+...+.+..++++.+++ +...++.+++.+++++.|.+
T Consensus 211 ~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~ 281 (402)
T TIGR02006 211 IGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKS 281 (402)
T ss_pred eEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 99998887654433321000 0011123455556666688887654 23344455555555555543
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=163.13 Aligned_cols=278 Identities=17% Similarity=0.113 Sum_probs=168.5
Q ss_pred CCHHHHHHHHHHHhhCCC---CCeEEEeCCHHHHHHHHHHHhHhh-----------cCCcEEEEEeCCCCCCchhHHHhc
Q 011959 137 PCLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLARAF-----------TGRERIIKFEGCYHGHADPFLVKA 202 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~---~~~v~~~~sGseA~~~al~~ar~~-----------~~~~~ii~~~~~yhg~~~~~~~~~ 202 (474)
..+++++++++++++++. .+.++|++||++|+..+++.++.. .+.+.+|+.....|..........
T Consensus 36 ~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~ 115 (345)
T cd06450 36 ATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYL 115 (345)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHH
Confidence 357788888999888752 247999999999999999977542 122456666666776554444444
Q ss_pred CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhc---CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh
Q 011959 203 GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279 (474)
Q Consensus 203 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~ 279 (474)
|..+..++.... + .-|+++|++.+++ .+.++++|++...++++|.+.+ +++|.++|++|
T Consensus 116 g~~~~~v~~~~~-~-------------~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~ 177 (345)
T cd06450 116 DVKVRLVPVDED-G-------------RMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP----LEEIADLAEKY 177 (345)
T ss_pred hcCeEEeeeCCC-C-------------CcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC----HHHHHHHHHHh
Confidence 443322211100 1 1189999998874 1224566666666677898877 99999999999
Q ss_pred CCEEEEeccccCc-ccCCCccccccCC-CCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHH
Q 011959 280 GALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 355 (474)
Q Consensus 280 g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~a 355 (474)
|++||+|++|.++ ...........+. ..|.+ +++|.+++++++|+++.+ .+++.
T Consensus 178 ~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~----------------------~~~~~ 235 (345)
T cd06450 178 DLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR----------------------ALKLW 235 (345)
T ss_pred CCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH----------------------HHHHH
Confidence 9999999999755 2211100000111 24543 688988877778877554 22333
Q ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHH
Q 011959 356 AGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (474)
Q Consensus 356 aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (474)
+ +++.+.. ++..++..++.+++.+.|.++. ++.......+.++.+.+.... + ......++.+
T Consensus 236 ~---~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~iv~f~~~~~~--~-------~~~~~~~i~~ 300 (345)
T cd06450 236 A---TLRRFGRDGYGEHIDRIVDLAKYLAELIRADP---GFELLGEPNLSLVCFRLKPSV--K-------LDELNYDLSD 300 (345)
T ss_pred H---HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCceeEEEEEECCcc--h-------hhHHHHHHHH
Confidence 3 3333332 4455666667777777666531 111111223445555543210 0 0122357888
Q ss_pred HHHHCCeEecccC----CcceEEec--CC-cHHHHHHHHHHHHH
Q 011959 433 GMLEEGVYFAPSQ----FEAGFTSL--AH-SSDDIQHTITAAEK 469 (474)
Q Consensus 433 ~l~~~Gv~v~~~~----~~~~~~~~--~~-t~e~i~~~l~~l~~ 469 (474)
.|.++|+++.+.. ...+|++. .+ |++|++++++.|++
T Consensus 301 ~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 301 RLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred HHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 8999965544321 23567753 34 99999999999876
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=165.56 Aligned_cols=237 Identities=19% Similarity=0.162 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++...+|.++++++. +.+.+++++||++|+..+++.. ...++.|++....|++..........
T Consensus 38 ~~p~~~~le~~la~l~-g~~~a~~~~sG~~Ai~~~l~~l--~~~gd~Vl~~~~~y~~~~~~~~~~~~------------- 101 (369)
T cd00614 38 GNPTVDALEKKLAALE-GGEAALAFSSGMAAISTVLLAL--LKAGDHVVASDDLYGGTYRLFERLLP------------- 101 (369)
T ss_pred CChhHHHHHHHHHHHH-CCCCEEEEcCHHHHHHHHHHHH--cCCCCEEEECCCCcchHHHHHHHHHh-------------
Confidence 5667788888888887 4578889999999999999842 34567788877777774322111100
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (474)
..+.++..++.+|++++++.++. ++++|++|+++|++|.+.+ +++|.++|++||++||+|++|.....
T Consensus 102 ---~~g~~~~~v~~~d~~~l~~~i~~---~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD~t~~~~~~-- 169 (369)
T cd00614 102 ---KLGIEVTFVDPDDPEALEAAIKP---ETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVDNTFATPYL-- 169 (369)
T ss_pred ---hcCeEEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcchhc--
Confidence 01123566677789999998863 5789999999999999998 99999999999999999999952211
Q ss_pred CccccccCCCCcee--ehhhhcCC-C-cceEEEEecH-HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 297 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 297 ~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~~-~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
...+....|++ +++|.++| | .+.|++++++ ++++.++.. ........+|..+++++..|+.+ +...+
T Consensus 170 ---~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~---~~~~g~~~~p~~a~~~l~~l~tl--~~r~~ 241 (369)
T cd00614 170 ---QRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFL---RLALGTILSPFDAWLLLRGLKTL--PLRME 241 (369)
T ss_pred ---CChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHH---HHhhCCCCCHHHHHHHHcCCCCH--HHHHH
Confidence 11122345666 79999985 4 7899999987 888777632 11123356777777665555432 34567
Q ss_pred HHHHHHHHHHHHHHHHhh--h--cCC-ee---------EEeeeceeEEEEEe
Q 011959 372 YLNKITGELTQGIIDAGK--K--AGH-AI---------CGGYISGMFGFFFT 409 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~--~--~~~-~~---------~v~~~g~~~~i~~~ 409 (474)
+..++.+++.+.|++... + +|. .. ...+.|.++.|++.
T Consensus 242 ~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~ 293 (369)
T cd00614 242 RHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELK 293 (369)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeC
Confidence 777788888888775421 0 110 00 12356888888875
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=159.82 Aligned_cols=311 Identities=16% Similarity=0.122 Sum_probs=188.3
Q ss_pred CCHHHHHHHHHHHHhcC---CCC-CC-----CHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEE
Q 011959 116 ADDQVLAALGETMKKGT---SFG-AP-----CLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERI 184 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~---~~~-~~-----~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~i 184 (474)
.++.+.+++.+.+++.. .++ +. .....++.+.++++++ ..++|++++|+++++..++.. ....++.|
T Consensus 12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~--~~~~gd~v 89 (376)
T TIGR01977 12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKG--LLKEGDHV 89 (376)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHh--ccCCCCEE
Confidence 46789999998887631 121 22 1445678888888885 234899999999999999874 23456677
Q ss_pred EEEeCCCCCCchhHH---HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCc
Q 011959 185 IKFEGCYHGHADPFL---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 261 (474)
Q Consensus 185 i~~~~~yhg~~~~~~---~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~ 261 (474)
++....|++...... ...|..+..++... .+ ..|++++++.+++ ++++|++..+++++|.
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~~~~---~~~~v~~~~~~n~tG~ 152 (376)
T TIGR01977 90 ITTPMEHNSVARPLECLKEQIGVEITIVKCDN-EG-------------LISPERIKRAIKT---NTKLIVVSHASNVTGT 152 (376)
T ss_pred EECcchhhHHHHHHHHHHHHcCcEEEEEecCC-CC-------------CcCHHHHHHhcCC---CCeEEEEECCCCCccc
Confidence 776655544322211 11133222111110 00 1278999988853 5778888888888999
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHH-HHhhcC
Q 011959 262 IAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDI-MEMVAP 337 (474)
Q Consensus 262 i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i-~~~~~~ 337 (474)
+.+ +++|.++|++||+++|+|++|+ |.. .+..+. ..+|++ ++.|.+++.-.+|+++.+++. +..+..
T Consensus 153 ~~~----~~~i~~l~~~~~~~livD~a~~~g~~---~~~~~~--~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~ 223 (376)
T TIGR01977 153 ILP----IEEIGELAQENGIFFILDAAQTAGVI---PIDMTE--LAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKS 223 (376)
T ss_pred cCC----HHHHHHHHHHcCCEEEEEhhhccCcc---CCCchh--cCCCEEEecccccccCCCCceEEEEcCCcCcCceec
Confidence 999 8899999999999999999995 221 111122 235765 466998753346777665553 111111
Q ss_pred CCCcc-------------cccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCee--EEee
Q 011959 338 AGPMY-------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI--CGGY 399 (474)
Q Consensus 338 ~~~~~-------------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~v~~ 399 (474)
..... .+...+.+...+.+..++|+.+.+ +...++.+++.+++++.|++... ..+.. +...
T Consensus 224 ~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~-~~~~~~~~~~~ 302 (376)
T TIGR01977 224 GGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINK-VKIYGPADPAN 302 (376)
T ss_pred CCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCC-eEEeCCCCccc
Confidence 00000 001123456666777778887765 34566777777777777765321 00100 0011
Q ss_pred eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC--------------CcceEEe--cCCcHHHHHH
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ--------------FEAGFTS--LAHSSDDIQH 462 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--------------~~~~~~~--~~~t~e~i~~ 462 (474)
.+.++.+.+... ....+.+.|.++ ||.+..+. ...+|++ ..+|++|+++
T Consensus 303 ~~~~v~~~~~~~--------------~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~ 368 (376)
T TIGR01977 303 RVGVVSFTVEGI--------------DSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEK 368 (376)
T ss_pred cCCeEEEEECCC--------------CHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHH
Confidence 244555554211 125688888887 98886542 2346764 5679999999
Q ss_pred HHHHHHH
Q 011959 463 TITAAEK 469 (474)
Q Consensus 463 ~l~~l~~ 469 (474)
++++|++
T Consensus 369 ~~~~l~~ 375 (376)
T TIGR01977 369 LLEALSE 375 (376)
T ss_pred HHHHHhh
Confidence 9999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-16 Score=157.06 Aligned_cols=307 Identities=15% Similarity=0.130 Sum_probs=178.1
Q ss_pred CHHHHHHHHHHH-Hh-cCCC------CCCCHHHHHHHH----HHHhhCCCCCeE-EEeCCHHHHHHHHHHHhHhhcC-Cc
Q 011959 117 DDQVLAALGETM-KK-GTSF------GAPCLLENVLAE----MVISAVPSIEMV-RFVNSGTEACMGVLRLARAFTG-RE 182 (474)
Q Consensus 117 ~p~v~~a~~~~~-~~-~~~~------~~~~~~~~~la~----~l~~~~~~~~~v-~~~~sGseA~~~al~~ar~~~~-~~ 182 (474)
||.|++|+...+ .+ +..+ ++ ++...+|.+ ++++++ +.+.+ ++++||+.|+.+++. ++.+ ++
T Consensus 41 ~p~v~~a~~~~~~~~~~~g~~gsr~~~G-~~~~~~lE~~~~~~la~l~-g~~~alv~~~SG~~A~~~~l~---al~~~GD 115 (416)
T PRK13034 41 SPAVMEAQGSVLTNKYAEGYPGKRYYGG-CEFVDEVEALAIERAKQLF-GCDYANVQPHSGSQANGAVYL---ALLKPGD 115 (416)
T ss_pred CHHHHHHhcchhhcCCCCCCCCCcccCC-ChHHHHHHHHHHHHHHHHh-CCCceEEecCCcHHHHHHHHH---HhcCCCC
Confidence 899999999985 44 2211 12 466677777 888888 55566 457999999999998 4455 45
Q ss_pred EEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC------CCHHHHHHHHhcCCCCeEEEEE-ccc
Q 011959 183 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF------NDVSALENLFENNKGEIAAIIL-EPV 255 (474)
Q Consensus 183 ~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~a~vi~-ep~ 255 (474)
.|++...++.+.... |.. +...+. ..+...+++ .|++++++.++.+ ++++|++ +++
T Consensus 116 ~Vl~~~~~~~~~~~~-----g~~------~~~~~~----~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~klVi~~~~~ 178 (416)
T PRK13034 116 TILGMSLSHGGHLTH-----GAK------VSLSGK----WYNAVQYGVDRLTGLIDYDEVEELAKEH--KPKLIIAGFSA 178 (416)
T ss_pred EEEEcCccceeeeec-----CCc------ceeccc----eeeeEEcccccccCCcCHHHHHHHHhhc--CCeEEEECCCc
Confidence 555544444331110 100 000000 000112222 4899999988653 4577777 454
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHH-
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRD- 330 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~- 330 (474)
+ |...+ +.+|.++|++||++||+|++| .|. ..|... ..++ ..|++ +++|+++|+. .|+++++++
T Consensus 179 ~---g~~~d----l~~l~~la~~~g~~livD~Aha~G~~~~g~~~--~~~~-~~Di~~~s~~K~l~g~~-GG~v~~~~~~ 247 (416)
T PRK13034 179 Y---PRELD----FARFREIADEVGALLMVDMAHIAGLVAAGEHP--NPFP-HAHVVTTTTHKTLRGPR-GGMILTNDEE 247 (416)
T ss_pred c---ccccC----HHHHHHHHHHcCCEEEEeCcccccCcccCCCC--CCCC-CceEEEEeCcccCCCCC-CeEEEECcHH
Confidence 4 34445 888999999999999999999 444 333211 1111 25655 6889996532 455666554
Q ss_pred HHHhhcCCCCcccccCCCCChHHHHHH-HHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEE
Q 011959 331 IMEMVAPAGPMYQAGTLSGNPLAMTAG-IHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (474)
Q Consensus 331 i~~~~~~~~~~~~~~t~~~~~~~~aaa-~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (474)
+.+.++. ..+.+.+-+.++...+++ .+.++.++. .++.+++.++.++|++.|.+.+. .+.. ......++.+.
T Consensus 248 ~~~~~~~--~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~--~~~~-~~~~t~i~~v~ 322 (416)
T PRK13034 248 IAKKINS--AVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGY--DLVS-GGTDNHLLLVD 322 (416)
T ss_pred HHHHHHh--hcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcCC--Eecc-CCCCCcEEEEE
Confidence 4444442 111111111223333333 344444432 34578999999999999876521 1110 01234455555
Q ss_pred EecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc------CC----cceEEe------cCCcHHHHHHHHHHHHHHH
Q 011959 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS------QF----EAGFTS------LAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------~~----~~~~~~------~~~t~e~i~~~l~~l~~~~ 471 (474)
+.+.. .....+.+.|.++||++.+. .+ ..+|++ ..++++|++++++.|++++
T Consensus 323 ~~~~~------------~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~ 390 (416)
T PRK13034 323 LRPKG------------LSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVL 390 (416)
T ss_pred cCCCC------------CCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 53321 11244567788889999752 11 235653 3778999999999999887
Q ss_pred hh
Q 011959 472 RQ 473 (474)
Q Consensus 472 ~~ 473 (474)
.+
T Consensus 391 ~~ 392 (416)
T PRK13034 391 DD 392 (416)
T ss_pred hc
Confidence 53
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-17 Score=161.50 Aligned_cols=285 Identities=17% Similarity=0.125 Sum_probs=176.2
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
+++...+|.+.++++++ .+..++++||+.|+..++.. ....++.||+..+.| +.+...+..... ..+
T Consensus 59 ~~pt~~~Le~~lA~l~G-~~~al~~~sG~~Ai~~~l~a--l~~~Gd~Vv~~~~~y-~~~~~~~~~~~~---------~~g 125 (386)
T PRK06767 59 GNPTVKLFEERMAVLEG-GEEALAFGSGMAAISATLIG--FLKAGDHIICSNGLY-GCTYGFLEVLEE---------KFM 125 (386)
T ss_pred CCcchHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHH--HhCCCCEEEEcCCcH-HHHHHHHHHHHh---------hcC
Confidence 45556888888888884 56788889999999888863 233456677666554 434333322111 001
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (474)
+ ++..++..|++++++.++. ++++|++|.++|++|.+.+ +++|.++|+++|+++|+||+|.....+.
T Consensus 126 i------~~~~~~~~d~~~l~~~i~~---~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD~a~a~~~~~~ 192 (386)
T PRK06767 126 I------THSFCDMETEADIENKIRP---NTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVDNTFCSPYLQR 192 (386)
T ss_pred e------EEEEeCCCCHHHHHHhhCc---CceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 1 1223344578899888863 5789999999999999998 9999999999999999999994211111
Q ss_pred CccccccCCCCcee--ehhhhcCC-Ccce-EEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 297 GGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 297 ~~~~~~~g~~pdi~--t~sK~l~~-G~~i-G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
.. ..|. |++ +++|.+++ |.++ |+++++++.++.+........++ ..+|+.+++++..|+.+ +..+++
T Consensus 193 pl---~~g~--Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~--~~~~~~a~l~~~~L~tl--~~r~~~ 263 (386)
T PRK06767 193 PL---ELGC--DAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGG--IMAPFDAWLLLRGLKTL--AVRMDR 263 (386)
T ss_pred ch---hcCC--cEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCC--CCCHHHHHHHHcCCCcH--HHHHHH
Confidence 11 1233 555 68899986 7775 77888988776653110111111 23566655555554432 345566
Q ss_pred HHHHHHHHHHHHHHHhhhcCCee------------EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeE
Q 011959 373 LNKITGELTQGIIDAGKKAGHAI------------CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~------------~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (474)
.+++..++.+.|++. +.+. ..++.|.++.|++... .+...+|.+.|...++.
T Consensus 264 ~~~~a~~la~~L~~~----p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~------------~~~~~~f~~~l~~~~~~ 327 (386)
T PRK06767 264 HCDNAEKIVSFLKNH----DAVEGVWYPEGELASRQMKRGGGVISFSIKGG------------KEETQAFINDLHFITIA 327 (386)
T ss_pred HHHHHHHHHHHHHcC----CCccEEECCCcHHHHHhCCCCCceEEEEEcCC------------HHHHHHHHHhCCccEEe
Confidence 777777777777654 2111 1235678888887421 12345677777655554
Q ss_pred ecccCCc---------------------------ceEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 441 FAPSQFE---------------------------AGFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 441 v~~~~~~---------------------------~~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+.-++.. .+|++. --|+.+.+++-|+++++.+
T Consensus 328 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~sv--GlE~~~dl~~dl~~al~~~ 386 (386)
T PRK06767 328 VSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSV--GLESWEDIVSDLEQALKKI 386 (386)
T ss_pred cCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEe--ccCCHHHHHHHHHHHHhhC
Confidence 4333211 124443 3356778888888887653
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-16 Score=151.73 Aligned_cols=321 Identities=18% Similarity=0.161 Sum_probs=206.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCC
Q 011959 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~--~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg 193 (474)
-+|+|++|+.+..-. ....-......++.+.|...++. .+-+++..||+-|+|+++.. ...++++|++...+.+|
T Consensus 16 v~~~V~~am~~~~~~-h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~s--l~~pgdkVLv~~nG~FG 92 (383)
T COG0075 16 VPPRVLLAMARPMVG-HRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVAS--LVEPGDKVLVVVNGKFG 92 (383)
T ss_pred CCHHHHHHhcCCCCC-CCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHh--ccCCCCeEEEEeCChHH
Confidence 368888887765422 10111245567777888888863 35677889999999999984 34467899999999888
Q ss_pred CchhHHHh-cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHH
Q 011959 194 HADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (474)
Q Consensus 194 ~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (474)
....-+.. .|..+..+..++...+ |++++++.|++++ ++.+|.+-.+-.++|.+.| +++|
T Consensus 93 ~R~~~ia~~~g~~v~~~~~~wg~~v--------------~p~~v~~~L~~~~-~~~~V~~vH~ETSTGvlnp----l~~I 153 (383)
T COG0075 93 ERFAEIAERYGAEVVVLEVEWGEAV--------------DPEEVEEALDKDP-DIKAVAVVHNETSTGVLNP----LKEI 153 (383)
T ss_pred HHHHHHHHHhCCceEEEeCCCCCCC--------------CHHHHHHHHhcCC-CccEEEEEeccCcccccCc----HHHH
Confidence 76655543 3443333222221111 8999999999653 5777777777778999999 9999
Q ss_pred HHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCc--c--------
Q 011959 273 RRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM--Y-------- 342 (474)
Q Consensus 273 ~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~--~-------- 342 (474)
.++|++||+++|+|-|-+ | .|..+-.+.||++.-+..-.|++++---+|.+..+++..+.+...... +
T Consensus 154 ~~~~k~~g~l~iVDaVsS-~-Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~ 231 (383)
T COG0075 154 AKAAKEHGALLIVDAVSS-L-GGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLK 231 (383)
T ss_pred HHHHHHcCCEEEEEeccc-C-CCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHH
Confidence 999999999999998875 1 233455666777554556789999433488888999988887643211 1
Q ss_pred -----cccCCCCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCc
Q 011959 343 -----QAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY 414 (474)
Q Consensus 343 -----~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~ 414 (474)
....|+.+.....+..++|+.+.++ +.+++.+++.+.+++++++++.+.-. +..... .
T Consensus 232 ~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~--~~~~~s------------~ 297 (383)
T COG0075 232 YMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFA--DPERRS------------P 297 (383)
T ss_pred HHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc--CcccCC------------C
Confidence 1223344444555666889888774 45666667777777777766322110 000001 1
Q ss_pred CcccccccchHHHHHHHHHHHH-CCeEecccCC----cceEEe--cCCcHHHHHHHHHHHHHHHhhC
Q 011959 415 NFEDAKKSETTKFARFYRGMLE-EGVYFAPSQF----EAGFTS--LAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~----~~~~~~--~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
.......|.......+...+++ .|+.+.++.. ..+||. -..+.+++..++.+|+.++.++
T Consensus 298 tvta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~ 364 (383)
T COG0075 298 TVTAIKVPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALREL 364 (383)
T ss_pred ceEEEECCCCCCcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHc
Confidence 1111222322222233335554 4898887743 246773 4679999999999999998763
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-16 Score=149.67 Aligned_cols=287 Identities=15% Similarity=0.157 Sum_probs=179.8
Q ss_pred eEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC----C
Q 011959 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN----D 232 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~----d 232 (474)
.++++++-+.+++.++++ .....+.|++-+.+|-+. ...+...|. .++.++.+ +
T Consensus 126 diiit~G~t~~l~~~l~~--~~N~gd~vlie~~ty~~A-L~s~~a~gv-------------------~~ipv~md~~Gi~ 183 (472)
T KOG0634|consen 126 DIIITNGNTDGLFKVLRT--LINRGDHVLIEEYTYPSA-LQSMEALGV-------------------KIIPVKMDQDGID 183 (472)
T ss_pred eEEEecCCchHHHHHHHH--hhcCCCceEEecccchHH-HHhccccCc-------------------eEEeccccCCCCC
Confidence 799999999999999995 233344555545566442 222222222 23333332 7
Q ss_pred HHHHHHHHhcCC------CCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc---C------
Q 011959 233 VSALENLFENNK------GEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL---A------ 295 (474)
Q Consensus 233 ~~~le~~l~~~~------~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~---g------ 295 (474)
+|.|++.+.... .+...+.+-| .+|++|...+.+. .++|.+||+||++++|.||+|-=+ .. +
T Consensus 184 pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~er-rk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~ 262 (472)
T KOG0634|consen 184 PESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLER-RKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELES 262 (472)
T ss_pred HHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHH-HHHHHHHHHHcCEEEEecCccceeeccccCCCccccC
Confidence 999999987532 2355666666 5577888877665 999999999999999999999422 22 1
Q ss_pred CCccccc---------cCC--CCcee---ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHH
Q 011959 296 YGGAQEY---------FGV--TPDLT---TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 361 (474)
Q Consensus 296 ~~~~~~~---------~g~--~pdi~---t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal 361 (474)
..+..+. .+. .-.++ +|||-++.|+|+||+.+++-+++.+-. .....|.+.+.+.+....+.|
T Consensus 263 p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~---~ae~~t~~pSg~sq~iv~a~l 339 (472)
T KOG0634|consen 263 PAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILD---LAEVATSGPSGFSQGIVYAML 339 (472)
T ss_pred ccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhh---hcceeecCcccccHHHHHHHH
Confidence 0111001 111 11233 799999999999999999988777652 334456667778888888888
Q ss_pred HHhcCCCHHHHHHHHHH-------HHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH
Q 011959 362 KRLKEPGTYEYLNKITG-------ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (474)
Q Consensus 362 ~~~~~~~~~~~~~~~~~-------~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (474)
+..-++++++.+.+... .+...|.+.+...-+....+..|+|+|+++.- .++. ....-....+.+...+
T Consensus 340 ~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~---~~~~-~~~~i~q~~e~i~~~~ 415 (472)
T KOG0634|consen 340 KRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPY---INFD-TKKSINQIEEIIFIKA 415 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecc---cccc-cccchHHHHHHHHHHH
Confidence 87665544444444433 33333333322222445567789999999851 1110 0001112334566777
Q ss_pred HHCCeEecccCC----------c-ceEEecC-CcHHHHHHHHHHHHHHHhh
Q 011959 435 LEEGVYFAPSQF----------E-AGFTSLA-HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 435 ~~~Gv~v~~~~~----------~-~~~~~~~-~t~e~i~~~l~~l~~~~~~ 473 (474)
.++||.+.++.. . .+|++.. ...|++++++++|..++++
T Consensus 416 vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike 466 (472)
T KOG0634|consen 416 VKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKE 466 (472)
T ss_pred HHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHH
Confidence 899999887631 1 3455543 4788999999999998875
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-16 Score=157.31 Aligned_cols=254 Identities=19% Similarity=0.186 Sum_probs=150.1
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHH--hc--CCCC-CC------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMK--KG--TSFG-AP------CLLENVLAEMVISAVP-SIEMVRFVNSGTE 166 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~--~~--~~~~-~~------~~~~~~la~~l~~~~~-~~~~v~~~~sGse 166 (474)
+.|+|..+. +..++.+++++.+.+. .. .... .. .+...++.+.++++++ +.+.++|++||++
T Consensus 4 ~iyld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~ 77 (404)
T PRK14012 4 PIYLDYSAT------TPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATE 77 (404)
T ss_pred eEEecCcCC------CCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHH
Confidence 357775543 3468999999988875 21 1110 00 1334567788888886 4577999999999
Q ss_pred HHHHHHHHhHh--hcCCcEEEEEeCCCCCCchhHHHh--cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhc
Q 011959 167 ACMGVLRLARA--FTGRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (474)
Q Consensus 167 A~~~al~~ar~--~~~~~~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (474)
|+..+++.... ...++.||+.+..|+......... .|..+..++.. ..+. -|+++|++.+++
T Consensus 78 al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~-~~g~-------------~d~~~l~~~i~~ 143 (404)
T PRK14012 78 SDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQ-SNGI-------------IDLEKLEAAMRD 143 (404)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccC-CCCc-------------CCHHHHHHhcCC
Confidence 99999875432 234566666655554433222211 23322211111 0110 179999998863
Q ss_pred CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehh--hhcCCCc
Q 011959 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGL 320 (474)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~s--K~l~~G~ 320 (474)
++++|++..+++++|.+.+ +++|.++|++||+++|+|++|+. |.. ..+.....+|++++| |.+|++
T Consensus 144 ---~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~~---g~~-~~~~~~~~~D~~~~s~~K~~gp~- 211 (404)
T PRK14012 144 ---DTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQSV---GKV-PIDLSKLKVDLMSFSAHKIYGPK- 211 (404)
T ss_pred ---CCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchhc---CCc-ccCcccCCCCEEEEehhhccCCC-
Confidence 5678888888889999998 99999999999999999999951 111 011112347877655 977643
Q ss_pred ceEEEEecHHHHHhhcCC--C----CcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHH
Q 011959 321 PVGAYGGRRDIMEMVAPA--G----PMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIID 386 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~--~----~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~ 386 (474)
.+|+++.+++....+.+. + ..+..+| .+.....+..++++.++. +...++.+++.+++.+.|++
T Consensus 212 g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt--~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~ 283 (404)
T PRK14012 212 GIGALYVRRKPRVRLEAQMHGGGHERGMRSGT--LPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKD 283 (404)
T ss_pred ceEEEEEecCCCCCCCceecCCCccCCccCCC--cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 689998877643333210 0 0011111 233334444456655433 33445555555556555544
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-16 Score=154.72 Aligned_cols=310 Identities=14% Similarity=0.076 Sum_probs=190.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCch
Q 011959 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (474)
.++..+++.+.+..+..++ ..+...++++++++++ +.+++++++||++|+..+++.. ...++++||+...+|.+...
T Consensus 10 ~~~e~~a~~~~~~~~~~~~-~g~~~~~~e~~la~~~-g~~~~v~~~sgt~aL~~~l~al-~~~pGd~Viv~~~t~~~~~~ 86 (376)
T TIGR02379 10 TGQELEYIAEAISEGKLSG-DGPFSRRCETWLENRT-GTKKALLTPSCTAALEMAALLL-DIQPGDEVIMPSYTFVSTAN 86 (376)
T ss_pred CHHHHHHHHHHHHcCCccC-CcHHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHHHH
Confidence 3566888888887754332 3456788888888887 6789999999999999988742 24466888888888876433
Q ss_pred hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHH
Q 011959 197 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 197 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
. +...|..+...+... .++ . -|++++++.++. ++++|+ |+ +.+|...+ +++|.++|
T Consensus 87 ~-~~~~G~~~v~vd~d~-~~~---------~---~d~~~le~~i~~---~tk~Ii--p~-~~~G~~~d----~~~I~~la 142 (376)
T TIGR02379 87 A-FVLRGAKIVFVDIRP-DTM---------N---IDETLIESAITH---RTKAIV--PV-HYAGVACD----MDTIMALA 142 (376)
T ss_pred H-HHHcCCEEEEEecCC-CcC---------C---CCHHHHHHhcCc---CceEEE--Ee-CCCCCccC----HHHHHHHH
Confidence 3 333344332221111 000 0 178889988863 566766 33 34577777 89999999
Q ss_pred HHhCCEEEEeccccCcccCCCccccccCCCCceeehh----hhcCCCcceEEEEec-HHHHHhhcCC---CCc-------
Q 011959 277 KENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVAPA---GPM------- 341 (474)
Q Consensus 277 ~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~s----K~l~~G~~iG~~~~~-~~i~~~~~~~---~~~------- 341 (474)
++||++||.|++|+-.. .+.....|..-|+.+|| |.++.|.+.|+++.+ +++.+.++.. +..
T Consensus 143 ~~~~i~vIeDaa~~~g~---~~~~~~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~ 219 (376)
T TIGR02379 143 NKHQLFVIEDAAQGVMS---TYKGRALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQFFRG 219 (376)
T ss_pred HHCCCEEEEECccccCC---ccCCcccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCcccccc
Confidence 99999999999996221 01111233344778888 999988789998665 7777766521 100
Q ss_pred --------ccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh----hcC-CeeEEeeeceeEEEEE
Q 011959 342 --------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK----KAG-HAICGGYISGMFGFFF 408 (474)
Q Consensus 342 --------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~-~~~~v~~~g~~~~i~~ 408 (474)
..+..+..+.+.++.+++.|+.++ +..++-+++.++..+.|..+.. ..+ .+......-.++.+.+
T Consensus 220 ~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~--~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (376)
T TIGR02379 220 EVDKYTWRDIGSSYLPSELQAAYLWAQLEQAD--RINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKL 297 (376)
T ss_pred CCCcceeeeecccCCccHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEE
Confidence 012233445666677767777653 4555666666667777765321 111 0101111112333433
Q ss_pred ecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----------C---------------cceEEe--cCCcHHHH
Q 011959 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------F---------------EAGFTS--LAHSSDDI 460 (474)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------~---------------~~~~~~--~~~t~e~i 460 (474)
... ...+++.+.|.++||...... . ..++++ ...|++|+
T Consensus 298 ~~~-------------~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~ 364 (376)
T TIGR02379 298 KDE-------------DDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQ 364 (376)
T ss_pred CCc-------------CCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHH
Confidence 211 113678899999999765211 0 012343 45699999
Q ss_pred HHHHHHHHHHH
Q 011959 461 QHTITAAEKVL 471 (474)
Q Consensus 461 ~~~l~~l~~~~ 471 (474)
+++++.+++++
T Consensus 365 ~~i~~~i~~~~ 375 (376)
T TIGR02379 365 ARVIQTICDYL 375 (376)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-16 Score=155.91 Aligned_cols=245 Identities=16% Similarity=0.101 Sum_probs=153.0
Q ss_pred CCCHHHHHHHHHHHHhc--CCCC--C-----CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHh-h-cCCc
Q 011959 115 HADDQVLAALGETMKKG--TSFG--A-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA-F-TGRE 182 (474)
Q Consensus 115 ~~~p~v~~a~~~~~~~~--~~~~--~-----~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~-~-~~~~ 182 (474)
..++.|.+++.+.+... .... . ..+...++.+.++++++ ..+.++|++|+++++..+++.+.. + .+++
T Consensus 10 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~ 89 (364)
T PLN02651 10 PIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKK 89 (364)
T ss_pred CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCC
Confidence 46789999999887542 1111 1 12345677888888886 467899999999999999876532 2 3356
Q ss_pred EEEEEeCCCCCCchhHHH--hcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCC
Q 011959 183 RIIKFEGCYHGHADPFLV--KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (474)
Q Consensus 183 ~ii~~~~~yhg~~~~~~~--~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (474)
+||+.+..|+........ ..|..+..++... .+. -|++++++.++. ++++|++..+++++|
T Consensus 90 ~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~-~~~-------------~d~~~l~~~i~~---~t~lv~v~~~~n~tG 152 (364)
T PLN02651 90 HVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS-DGL-------------VDLDELAAAIRP---DTALVSVMAVNNEIG 152 (364)
T ss_pred EEEEcccccHHHHHHHHHHHhcCCEEEEEccCC-CCc-------------CCHHHHHHhcCC---CcEEEEEECCCCCce
Confidence 666655444443222221 1222221111110 010 178999998863 578888888888999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC-CccccccCCCCceee--hhhhcCCCcceEEEEecHHHHHhhcC
Q 011959 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAP 337 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~~i~~~~~~ 337 (474)
.+.| +++|.++|++||+++++|.+|+. |. .+..+. ...|+++ .-|. +|...+|+++.+++..+.+.+
T Consensus 153 ~~~~----l~~I~~~~~~~g~~~~vD~a~~~---g~~~~~~~~--~~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~~l~p 222 (364)
T PLN02651 153 VIQP----VEEIGELCREKKVLFHTDAAQAV---GKIPVDVDD--LGVDLMSISGHKI-YGPKGVGALYVRRRPRVRLEP 222 (364)
T ss_pred eccc----HHHHHHHHHHcCCEEEEEcchhh---CCcccCccc--CCCCEEEechhhh-CCCCceEEEEEcCCCCCCCCc
Confidence 9999 99999999999999999999951 11 122222 3457775 4584 443459999888876665543
Q ss_pred CCCc----ccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHH
Q 011959 338 AGPM----YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIID 386 (474)
Q Consensus 338 ~~~~----~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~ 386 (474)
.... ......+.|..++.+..++|+.+.+ +...++.+++.+++++.|.+
T Consensus 223 ~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~ 277 (364)
T PLN02651 223 LMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRA 277 (364)
T ss_pred cccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 1100 0011224566677777788888764 34445555566666666554
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-16 Score=153.34 Aligned_cols=300 Identities=16% Similarity=0.099 Sum_probs=180.8
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHH
Q 011959 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 200 (474)
Q Consensus 121 ~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~ 200 (474)
.+++.+.+.++.. +......++.+.+++++ +.+.+++++||++|++.+++..+ ...+++|++...+||+.... +.
T Consensus 2 ~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~-~~~~~~~~~sgt~al~~~l~~l~-~~~gd~vl~~~~~~~~~~~~-~~ 76 (352)
T cd00616 2 LEAVEEVLDSGWL--TLGPKVREFEKAFAEYL-GVKYAVAVSSGTAALHLALRALG-IGPGDEVIVPSFTFVATANA-IL 76 (352)
T ss_pred hHHHHHHHHcCCc--cCCHHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHHcC-CCCCCEEEeCCcchHHHHHH-HH
Confidence 3566676666432 23556778888888888 45789999999999999998532 24567888888888875433 33
Q ss_pred hcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC
Q 011959 201 KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280 (474)
Q Consensus 201 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g 280 (474)
..|..+...+..... ...|++++++.++ +++++|++.+ ..|...+ +++|+++|++||
T Consensus 77 ~~g~~~~~~~~~~~~-------------~~~d~~~l~~~i~---~~~~~v~~~~---~~G~~~~----~~~i~~l~~~~~ 133 (352)
T cd00616 77 LLGATPVFVDIDPDT-------------YNIDPELIEAAIT---PRTKAIIPVH---LYGNPAD----MDAIMAIAKRHG 133 (352)
T ss_pred HcCCeEEEEecCCCc-------------CCcCHHHHHHhcC---cCCeEEEEEC---CCCCcCC----HHHHHHHHHHcC
Confidence 333322221111000 0117899998875 3567777654 3576766 899999999999
Q ss_pred CEEEEecccc-Cc-ccCCCccccccCCCCceeehh----hhcCCCcceEEEEec-HHHHHhhcC---CCCc---------
Q 011959 281 ALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVAP---AGPM--------- 341 (474)
Q Consensus 281 ~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~t~s----K~l~~G~~iG~~~~~-~~i~~~~~~---~~~~--------- 341 (474)
++||+|++|+ |. ..+ ...+...|+.++| |.+++| +.|+++.+ +++.+.+.. ....
T Consensus 134 i~li~D~a~~~g~~~~~-----~~~~~~~d~~~~S~~~~K~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (352)
T cd00616 134 LPVIEDAAQALGATYKG-----RKVGTFGDAGAFSFHPTKNLTTG-EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHE 207 (352)
T ss_pred CeEEEECCCCCCCeECC-----EEcccCcceeEEcCCCCCCCccc-CceEEEECCHHHHHHHHHHHHcCCCCCCCccccc
Confidence 9999999995 32 111 1223334555544 999543 46777665 577665542 1100
Q ss_pred ccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe---eeceeEEEEEecCCCcCccc
Q 011959 342 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG---YISGMFGFFFTEGPVYNFED 418 (474)
Q Consensus 342 ~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~---~~g~~~~i~~~~~~~~~~~~ 418 (474)
....++..+++.++.++..++.+ +...++.+++.+++++.|.++. ...+..... ....++.+.+....
T Consensus 208 ~~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~------ 278 (352)
T cd00616 208 ILGYNYRLSEIQAAIGLAQLEKL--DEIIARRREIAERYKELLADLP-GIRLPDVPPGVKHSYHLYVIRLDPEA------ 278 (352)
T ss_pred eeeeccCcCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCCC-CccCCCCCCCCceeeEEEEEEECCcC------
Confidence 01123445677777776666544 4566777788888888887631 111111111 12234444442100
Q ss_pred ccccchHHHHHHHHHHHHCCeEecccCC---------------------------cceEEe--cCCcHHHHHHHHHHHH
Q 011959 419 AKKSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS--LAHSSDDIQHTITAAE 468 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------------~~~~~~--~~~t~e~i~~~l~~l~ 468 (474)
......+.+.|.++||.+..... ..++++ ...|++|++.++++|+
T Consensus 279 -----~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 279 -----GESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred -----CCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 11235788899999996642211 134554 4569999999998874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-15 Score=137.30 Aligned_cols=307 Identities=14% Similarity=0.163 Sum_probs=187.6
Q ss_pred CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHhH--hhcCC-cEEEE-EeCCCCCCchhHHHhcCCCCccC
Q 011959 137 PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLAR--AFTGR-ERIIK-FEGCYHGHADPFLVKAGSGVATL 209 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~al~~ar--~~~~~-~~ii~-~~~~yhg~~~~~~~~~g~~~~~~ 209 (474)
...+...|++.+.+.++ ..+.+.+||+...+...+.-+-- ...|. ++|+. ..+-|-|+.+..+.-.----++
T Consensus 76 ~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~k- 154 (417)
T COG3977 76 KAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAK- 154 (417)
T ss_pred hhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeecc-
Confidence 35677889999999887 36789999987777777766321 11222 23333 3667877665443211000000
Q ss_pred CCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011959 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (474)
Q Consensus 210 ~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (474)
|..+..+ .+.-.+++ |.++|+- .+.+.+|++.-+.|++|.+...+| +.+|-+|+++||+.||.|.+|
T Consensus 155 --P~iel~~--~g~FKY~v---DF~~l~i-----~e~~g~ic~SRPtNPTGNVlTdeE-~~kldalA~~~giPliIDnAY 221 (417)
T COG3977 155 --PNIELLP--AGQFKYHV---DFEHLHI-----GESTGAICVSRPTNPTGNVLTDEE-LAKLDALARQHGIPLIIDNAY 221 (417)
T ss_pred --CCccccc--ccceeecc---CHHHccc-----ccccceEEecCCCCCCCCcccHHH-HHHHHHHhhhcCCcEEEeccc
Confidence 1111111 00001222 6666642 247889999888888998887777 999999999999999999999
Q ss_pred cCc-ccCCCccccccCCCCcee---ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH--
Q 011959 290 TGF-RLAYGGAQEYFGVTPDLT---TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-- 363 (474)
Q Consensus 290 ~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-- 363 (474)
|. .++--|.-...-..++++ ++||.=-.|.|+|-+++++++++.+...... -+......+.+.+...++.
T Consensus 222 -g~PFP~iifsd~~~~w~~NiilC~SLSK~GLPG~R~GIiIane~viqaitnmn~i---isLap~~~G~Aia~~mie~gd 297 (417)
T COG3977 222 -GVPFPGIIFSDATPLWNENIILCMSLSKLGLPGSRCGIIIANEKVIQAITNMNGI---ISLAPGRMGPAIAAEMIESGD 297 (417)
T ss_pred -CCCCCceecccccccCCCCEEEEeehhhcCCCCcceeEEEccHHHHHHHHhccce---eeecCCCccHHHHHHHhhcch
Confidence 34 333222211112245554 5778533799999999999999998742211 1222233344444444431
Q ss_pred ---hcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeE
Q 011959 364 ---LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (474)
Q Consensus 364 ---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (474)
+.++-.+--++++.+...+.|+......++..+-+....|+|+.|.+-+++. .+++++|..+||+
T Consensus 298 l~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dLPItt------------~~LYq~LKa~Gvl 365 (417)
T COG3977 298 LLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLPITT------------EELYQRLKARGVL 365 (417)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhccCCCCH------------HHHHHHHHhCeEE
Confidence 1111222223334444445555555555555444444456677776654433 6899999999999
Q ss_pred ecccCC-------------cceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 441 FAPSQF-------------EAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 441 v~~~~~-------------~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+.|+.+ ..+|++++-+++.|+..+.+|.+.+++
T Consensus 366 ~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~~ie~Gva~lae~ve~ 411 (417)
T COG3977 366 MVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEKGVAILAEEVER 411 (417)
T ss_pred EecccccCCCCCCCCCCccceEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 999842 135889999999999999999988764
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=153.81 Aligned_cols=214 Identities=19% Similarity=0.205 Sum_probs=144.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHH---HhcCCCCccCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPD 213 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~~ 213 (474)
+++....|.+.|+++. +.+.+++++||++|+..++.. ....++.|++.++.|.+...... ...|.
T Consensus 81 ~~Pt~~~Le~~lA~le-g~~~~iv~~sG~~Ai~~~l~a--l~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi--------- 148 (427)
T PRK07049 81 NHPNSEIVEDRLAVYE-GAESAALFSSGMSAIATTLLA--FVRPGDVILHSQPLYGGTETLLAKTFRNFGV--------- 148 (427)
T ss_pred CCcCHHHHHHHHHHHh-CCCcEEEEccHHHHHHHHHHH--HhCCCCEEEEcCCCcccHHHHHHHHHHhcCc---------
Confidence 4555578888888887 566899999999999988874 33456788888888988543321 11122
Q ss_pred CCCCCCCCCCceEEcc-CCCHHHHHHHHhcC--CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH------hCCEEE
Q 011959 214 SPGVPKGATYETLTAP-FNDVSALENLFENN--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE------NGALLI 284 (474)
Q Consensus 214 ~~g~~~~~~~~~~~~~-~~d~~~le~~l~~~--~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~------~g~llI 284 (474)
+++.++ ..|++++++.+.+. .+++++|++|.++|++|.+.+ +++|.+++++ +++++|
T Consensus 149 ----------~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d----~~~l~~la~~~~~~~~~~~~vv 214 (427)
T PRK07049 149 ----------GAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVD----VAAVRRVADAIEARQGHRPIIA 214 (427)
T ss_pred ----------EEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccC----HHHHHHHHHHhhhcccCCCEEE
Confidence 112222 23678888777531 236889999999999999988 6666666665 899999
Q ss_pred EeccccCc-ccCCCccccccCCCCcee--ehhhhcC--CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHH
Q 011959 285 FDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIG--GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 359 (474)
Q Consensus 285 ~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~--~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~a 359 (474)
+||++.++ ... . .+ ++ .|++ ++||.++ +|+|+||+++++++++.+.. .......+.+|+.+.+++.
T Consensus 215 vDety~~~~~~~-p--l~-~g--~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~---~~~~~g~~ls~~~a~l~~r 285 (427)
T PRK07049 215 CDNTLLGPVFQK-P--LE-HG--ADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRA---LRSAIGTQLDPHSCWMLGR 285 (427)
T ss_pred EECCccccccCC-c--cc-cC--CCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHH---HHHhcCCCCCHHHHHHHHc
Confidence 99998654 211 1 11 23 3555 7999999 48999999999998888763 2122233567888777776
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 011959 360 TLKRLKEPGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 360 al~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (474)
.|+.+ ...+++..++.+.+.+.|++.
T Consensus 286 ~L~tl--~~R~~~~~~~a~~la~~L~~~ 311 (427)
T PRK07049 286 SLETL--VLRMERANRNARAVAEFLRDH 311 (427)
T ss_pred CCChH--HHHHHHHHHHHHHHHHHHHhC
Confidence 66543 233455566777777777654
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8e-16 Score=153.05 Aligned_cols=234 Identities=14% Similarity=0.137 Sum_probs=147.2
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhH---HHhcCCCCccCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPD 213 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~ 213 (474)
.++...+|.+.++++.+. +..+.++||++|+..++.. ....+++||+..+.|.+..... +...|.
T Consensus 43 ~~p~~~~L~~~lA~l~g~-~~~v~~~sG~~ai~~~l~a--l~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~--------- 110 (376)
T PRK06460 43 ANPTVLELTKKIVELENA-EMGVAFSSGMGAISTTALA--LLKPGNSVLVHRDMFGRSYRFFTDYLKNWGV--------- 110 (376)
T ss_pred CCccHHHHHHHHHHHhCC-CcEEEeCCHHHHHHHHHHH--HhCCCCEEEEecCCcCcHHHHHHHHHHhhCc---------
Confidence 345567777888877743 4455668899999988873 2334567777665554432211 111121
Q ss_pred CCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcc
Q 011959 214 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFR 293 (474)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r 293 (474)
++..++.++.+.++++++ +++++|+++.++|++|.+.+ +++|.++|++||+++|+||+|..+.
T Consensus 111 ----------~v~~~~~~~~~~l~~~~~---~~tklV~l~sp~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~~ 173 (376)
T PRK06460 111 ----------NVDASNPGSDNIIEKAKS---KRYDVVFVENITNPLLRVVD----ITELSKVCKENGSILIVDATFSTPI 173 (376)
T ss_pred ----------EEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcCccc
Confidence 244455555555655543 36789999999999999999 8889999999999999999995321
Q ss_pred cCCCccccccCCCCcee--ehhhhcCC--CcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCH
Q 011959 294 LAYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (474)
Q Consensus 294 ~g~~~~~~~~g~~pdi~--t~sK~l~~--G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (474)
.... . .++ .|++ ++||.++| +.++|++++++++++.+... ......+.+|..+..++..++.+ +..
T Consensus 174 ~~~~--l-~~~--~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~---~~~~g~~~~~~~a~~~l~~~~~l--~~r 243 (376)
T PRK06460 174 NQKP--L-ELG--ADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQM---RRTLGTSLDPHAAYLTLRGIKTL--KIR 243 (376)
T ss_pred cCCh--h-hcC--CCEEEeecceeccCCCCceEEEEecCHHHHHHHHHH---HHhcCCCCCHHHHHHHHhchhhH--HHH
Confidence 1110 1 123 4555 79999974 36799999999998887631 11112334555444444444433 345
Q ss_pred HHHHHHHHHHHHHHHHHHhh----hcC-Ce---------eEEeeeceeEEEEEe
Q 011959 370 YEYLNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (474)
.+++.++.+++.+.|++... .+| +. ....+.|.|+.|++.
T Consensus 244 ~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~ 297 (376)
T PRK06460 244 MDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVN 297 (376)
T ss_pred HHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence 67778888888888775410 011 00 012367889999985
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-16 Score=155.53 Aligned_cols=238 Identities=16% Similarity=0.146 Sum_probs=153.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
+.++...+|.+.+++.. +.+.+++++||++|+..+++.. ...+++||+..+ .|+.+...+...-. ..
T Consensus 51 ~~~p~~~~le~~la~l~-g~~~~~~~~sG~~Ai~~al~al--~~~Gd~Vl~~~~-~~~~t~~~~~~~~~---------~~ 117 (380)
T TIGR01325 51 YANPTVAAFEERIAALE-GAERAVATATGMSAIQAALMTL--LQAGDHVVASRS-LFGSTVGFISEILP---------RF 117 (380)
T ss_pred CCCchHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEecC-CcchHHHHHHHHHH---------Hh
Confidence 34566788888888877 4578899999999999999742 334567776544 45544332211000 01
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
+ .++..++.+|++++++.++. ++++|++|.++|+.|.+.+ +++|.++|+++|++||+||+|..+...
T Consensus 118 g------~~v~~v~~~d~~~l~~~i~~---~tklV~le~p~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~~~~ 184 (380)
T TIGR01325 118 G------IEVSFVDPTDLNAWEAAVKP---NTKLVFVETPSNPLGELVD----IAALAELAHAIGALLVVDNVFATPVLQ 184 (380)
T ss_pred C------CEEEEECCCCHHHHHHhcCC---CceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 1 13555666789999888763 5789999998888999988 999999999999999999999633111
Q ss_pred CCccccccCCCCcee--ehhhhcCC-Ccce-EEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G~~i-G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
......+|++ +++|.++| |.++ |++++++++++.++. .........+|..+..++..++.+. ...+
T Consensus 185 -----~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~---~~~~~g~~~~p~~a~~~l~~l~tl~--~r~~ 254 (380)
T TIGR01325 185 -----QPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAV---YLRHTGPAMSPFNAWVLLKGLETLS--LRMQ 254 (380)
T ss_pred -----CchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHH---HHHhhCCCCCHHHHHHHHhccCcHH--HHHH
Confidence 1122345776 58999996 6666 666888888777763 1111112345565555555554432 3456
Q ss_pred HHHHHHHHHHHHHHHHh--hh--cCC-e---------eEEeeeceeEEEEEe
Q 011959 372 YLNKITGELTQGIIDAG--KK--AGH-A---------ICGGYISGMFGFFFT 409 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~--~~--~~~-~---------~~v~~~g~~~~i~~~ 409 (474)
+..++...+.+.|++.. .+ +|. . ....+.|.|+.|++.
T Consensus 255 ~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 255 KQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 66677777777776531 00 111 0 012356889999885
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-16 Score=155.33 Aligned_cols=216 Identities=15% Similarity=0.121 Sum_probs=146.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
+++...+|.+.++++++ .+.+++++||+.|+..++.. ....++.||+..+.|.. +.......-
T Consensus 62 ~~p~~~~Le~~iA~~~g-~~~~l~~~sG~~Ai~~al~~--ll~~Gd~Vl~~~~~y~~-~~~~~~~~~------------- 124 (400)
T PRK06234 62 GNPTSTEVENKLALLEG-GEAAVVAASGMGAISSSLWS--ALKAGDHVVASDTLYGC-TFALLNHGL------------- 124 (400)
T ss_pred CCccHHHHHHHHHHHhC-CCcEEEEcCHHHHHHHHHHH--HhCCCCEEEEecCccch-HHHHHHHHH-------------
Confidence 45667788888888884 46789999999999988873 23456677776655543 333221100
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccCccc
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGFRL 294 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~r~ 294 (474)
...+.++..++.+|++++++.++. ++++|++|.++|++|.+.+ +++|.++|++| |++||+||+|.....
T Consensus 125 --~~~G~~v~~vd~~d~e~l~~~i~~---~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~~~~~ 195 (400)
T PRK06234 125 --TRYGVEVTFVDTSNLEEVRNALKA---NTKVVYLETPANPTLKVTD----IKAISNIAHENNKECLVFVDNTFCTPYI 195 (400)
T ss_pred --hhCCeEEEEECCCCHHHHHHHhcc---CCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCCchhc
Confidence 001123555666789999998863 5789999999899999988 99999999997 999999999953311
Q ss_pred CCCccccccCCCCcee--ehhhhcCC-Ccce-EEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 295 AYGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 295 g~~~~~~~~g~~pdi~--t~sK~l~~-G~~i-G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
+.. .+...|++ +++|.+++ |+++ ||+++++++++.++..... ...+...+|..++.++..|+.+ +...
T Consensus 196 ~~~-----l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~-~~~g~~l~p~~a~l~~~~l~tl--~~r~ 267 (400)
T PRK06234 196 QRP-----LQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIK-DMTGSVIGPFEAFLIIRGMKTL--QIRM 267 (400)
T ss_pred CCc-----hhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHhccCcH--HHHH
Confidence 111 12234655 68999985 7765 8889999988877531111 1123466777777766666433 3455
Q ss_pred HHHHHHHHHHHHHHHH
Q 011959 371 EYLNKITGELTQGIID 386 (474)
Q Consensus 371 ~~~~~~~~~l~~~L~~ 386 (474)
++..++..++.+.|++
T Consensus 268 ~~~~~na~~~a~~L~~ 283 (400)
T PRK06234 268 EKHCKNAMKVAKFLES 283 (400)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 6666777777777664
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-15 Score=148.98 Aligned_cols=308 Identities=11% Similarity=0.025 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchh
Q 011959 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197 (474)
Q Consensus 118 p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~ 197 (474)
++-.+++.+.+..+..++ ..+...++++++++++ +.+++++++||++|+..+++.+ ....+++||+...+|.+.. .
T Consensus 11 ~~~~~~~~~~l~~~~~~g-~~~~~~~~e~~la~~~-g~~~~v~~~sgt~al~~~l~~~-~~~~Gd~Viv~~~t~~~~~-~ 86 (375)
T PRK11706 11 GTELDYIQQAMSSGKLCG-DGGFTRRCQQWLEQRF-GSAKVLLTPSCTAALEMAALLL-DIQPGDEVIMPSYTFVSTA-N 86 (375)
T ss_pred HHHHHHHHHHHHcCCccC-CCHHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHHh-CCCCCCEEEECCCCcHHHH-H
Confidence 445777888777664332 3566788888888887 6689999999999999988742 2345678888887777643 3
Q ss_pred HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Q 011959 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (474)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (474)
.+...|..+...+... .++ ..|++++++.++. ++++|++. +.+|...+ +++|.++|+
T Consensus 87 ~~~~~G~~~v~~d~d~-~~~------------~~d~~~le~~i~~---~tk~i~~~---~~~G~~~~----~~~i~~la~ 143 (375)
T PRK11706 87 AFVLRGAKIVFVDIRP-DTM------------NIDETLIEAAITP---KTRAIVPV---HYAGVACE----MDTIMALAK 143 (375)
T ss_pred HHHHcCCEEEEEecCC-CcC------------CcCHHHHHHhcCC---CCeEEEEe---CCCCCccC----HHHHHHHHH
Confidence 3334444322211110 000 1178999998864 45666643 24676666 899999999
Q ss_pred HhCCEEEEeccccCc-ccCCCccccccCCCCceeehh----hhcCCCcceEEEEecHHHHHhhcCC---C--C--c----
Q 011959 278 ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGRRDIMEMVAPA---G--P--M---- 341 (474)
Q Consensus 278 ~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~s----K~l~~G~~iG~~~~~~~i~~~~~~~---~--~--~---- 341 (474)
+||++||.|++|+-. ..+. ...|-.-|+.+|| |.++.|.+.+++..++++.+.++.. + . .
T Consensus 144 ~~~i~vIeD~a~a~g~~~~~----~~~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 219 (375)
T PRK11706 144 KHNLFVVEDAAQGVMSTYKG----RALGTIGHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQ 219 (375)
T ss_pred HcCCEEEEECccccccccCC----eeeecCcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccC
Confidence 999999999999622 2111 1112223777777 9998777777777778887654321 0 0 0
Q ss_pred -------ccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh----hcC-CeeEEeeeceeEEEEEe
Q 011959 342 -------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK----KAG-HAICGGYISGMFGFFFT 409 (474)
Q Consensus 342 -------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~-~~~~v~~~g~~~~i~~~ 409 (474)
..+..+-.+.+.++.+++.|+.+ +...++.+++.+++.+.|..+.. ..+ ..........++++.+.
T Consensus 220 ~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l--~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
T PRK11706 220 VDKYTWVDIGSSYLPSELQAAYLWAQLEAA--DRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLR 297 (375)
T ss_pred CCcceeeecccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEEC
Confidence 01122333456666666666654 34555555666666666654310 001 00001112223444432
Q ss_pred cCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------------------C--------cceEEe--cCCcHHHHH
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------------F--------EAGFTS--LAHSSDDIQ 461 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------------------~--------~~~~~~--~~~t~e~i~ 461 (474)
. .....++.+.|.++||.+.... . ..+.++ ...|++|++
T Consensus 298 ~-------------~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~ 364 (375)
T PRK11706 298 D-------------LEDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQR 364 (375)
T ss_pred C-------------cCCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHH
Confidence 1 1123678899999999754210 0 012333 346899999
Q ss_pred HHHHHHHHHH
Q 011959 462 HTITAAEKVL 471 (474)
Q Consensus 462 ~~l~~l~~~~ 471 (474)
.+++.|++++
T Consensus 365 ~i~~~i~~~~ 374 (375)
T PRK11706 365 TVIDTILEFF 374 (375)
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-15 Score=151.75 Aligned_cols=245 Identities=16% Similarity=0.071 Sum_probs=150.4
Q ss_pred CCCCHHHHHHHHHHHHhc--CCCCC-C------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh--cCC
Q 011959 114 GHADDQVLAALGETMKKG--TSFGA-P------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF--TGR 181 (474)
Q Consensus 114 G~~~p~v~~a~~~~~~~~--~~~~~-~------~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~--~~~ 181 (474)
+..++.|++++.+.+... ..... . .+...++.++++++++ +.+.++|++|++++++.+++..... ..+
T Consensus 8 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g 87 (353)
T TIGR03235 8 TPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKG 87 (353)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 446899999999988542 11110 1 1335678888888886 4678999999999999998854321 122
Q ss_pred cEEEEEeCCCCCCchhHHH---hcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCC
Q 011959 182 ERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (474)
Q Consensus 182 ~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (474)
++.|+.....|........ ..|..+..++... .+ ..|++++++.+++ ++++|+++.++++
T Consensus 88 ~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~-------------~~d~~~l~~~l~~---~~~lv~~~~~~n~ 150 (353)
T TIGR03235 88 KKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDE-SG-------------RIDVDELADAIRP---DTLLVSIMHVNNE 150 (353)
T ss_pred CCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCC-CC-------------cCCHHHHHHhCCC---CCEEEEEEcccCC
Confidence 2444444444544332221 1232222111110 00 1278999988863 5788888999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccCCCccccccCCCCceeehh--hhcCCCcceEEEEecHHHHHhh
Q 011959 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMV 335 (474)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pdi~t~s--K~l~~G~~iG~~~~~~~i~~~~ 335 (474)
+|.+.| +++|.++|++||+++|+|++|. |.. ....+. ...|++++| |.++. ..+|+++.+++..+..
T Consensus 151 tG~~~~----~~~I~~l~~~~~~~~ivD~a~~~g~~---~~~~~~--~~~D~~~~s~~K~~gp-~g~g~l~~~~~~~~~~ 220 (353)
T TIGR03235 151 TGSIQP----IREIAEVLEAHEAFFHVDAAQVVGKI---TVDLSA--DRIDLISCSGHKIYGP-KGIGALVIRKRGKPKA 220 (353)
T ss_pred ceeccC----HHHHHHHHHHcCCEEEEEchhhcCCc---cccccc--cCCCEEEeehhhcCCC-CceEEEEEccCccccc
Confidence 999998 9999999999999999999995 211 111122 246777554 97652 2389998888753321
Q ss_pred cCCCCccc-------ccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHH
Q 011959 336 APAGPMYQ-------AGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIID 386 (474)
Q Consensus 336 ~~~~~~~~-------~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~ 386 (474)
. ..+... ....+.|.....+..++++.+.+ ++..++++++.+++++.|++
T Consensus 221 ~-~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~ 279 (353)
T TIGR03235 221 P-LKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT 279 (353)
T ss_pred c-cCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1 011111 11223456666777778877653 45566677777777776654
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-15 Score=151.08 Aligned_cols=305 Identities=18% Similarity=0.182 Sum_probs=197.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCC---C--C----CCHHHHHHHHHHHhhCC-CC-CeEEEeCCHHHHHHHHHHHhHh-hcCC
Q 011959 114 GHADDQVLAALGETMKKGTSF---G--A----PCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARA-FTGR 181 (474)
Q Consensus 114 G~~~p~v~~a~~~~~~~~~~~---~--~----~~~~~~~la~~l~~~~~-~~-~~v~~~~sGseA~~~al~~ar~-~~~~ 181 (474)
|..++.|++++.+.+...... + . ..+...+..+.+++.++ .. +.|+|++|++++++.++...+. ..++
T Consensus 9 ~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g 88 (371)
T PF00266_consen 9 GPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKPG 88 (371)
T ss_dssp -B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTTT
T ss_pred cCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccccc
Confidence 456899999999988752111 1 1 12345677777888876 34 6899999999999999996432 4677
Q ss_pred cEEEEEeCCCCCCchhHHHh---cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCC
Q 011959 182 ERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (474)
Q Consensus 182 ~~ii~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (474)
++|++....|++........ .|..+..++.+.. + .-|++++++.+. +++++|++..+.+.
T Consensus 89 ~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~-~-------------~~~~~~~~~~l~---~~~~lv~~~~~~~~ 151 (371)
T PF00266_consen 89 DEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPG-G-------------SLDLEDLEEALN---PDTRLVSISHVENS 151 (371)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTT-S-------------SCSHHHHHHHHH---TTESEEEEESBETT
T ss_pred cccccccccccccccccccccccchhhhcccccccc-c-------------hhhhhhhhhhhc---cccceEEeeccccc
Confidence 88999888888765333222 2332221111100 1 117999999997 47899999999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC-CccccccCCCCceee--hhhhcCCCcceEEEEecHHHHHhh
Q 011959 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMV 335 (474)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~~i~~~~ 335 (474)
+|.+.| +++|.++|++||+++++|-+|+ + |. ....+ ...+|+++ .-| |+|+..+|+++.+++.++.+
T Consensus 152 tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~--g~~~id~~--~~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~ 221 (371)
T PF00266_consen 152 TGVRNP----IEEIAKLAHEYGALLVVDAAQS-A--GCVPIDLD--ELGADFLVFSSHK-LGGPPGLGFLYVRPEAIERL 221 (371)
T ss_dssp TTBBSS----HHHHHHHHHHTTSEEEEE-TTT-T--TTSS--TT--TTTESEEEEESTS-TTSSSTEEEEEEEHHHHHHH
T ss_pred ccEEee----eceehhhhhccCCceeEechhc-c--cccccccc--ccccceeeecccc-cCCCCchhhheehhhhhhcc
Confidence 999999 9999999999999999999995 1 11 12222 23467764 569 88766699999999999888
Q ss_pred cCCCCccc------------------ccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCe
Q 011959 336 APAGPMYQ------------------AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (474)
Q Consensus 336 ~~~~~~~~------------------~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (474)
.+...... +..-+.|.....+...+++.+++ +...++..++.+++++.|.++ +..
T Consensus 222 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~----~~~ 297 (371)
T PF00266_consen 222 RPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEEL----PGI 297 (371)
T ss_dssp HTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TTE
T ss_pred ccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcC----Cce
Confidence 54211000 00003456666777788887744 445566666666666666664 321
Q ss_pred e-----EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC------------cceEEe--cCC
Q 011959 395 I-----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------------EAGFTS--LAH 455 (474)
Q Consensus 395 ~-----~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------------~~~~~~--~~~ 455 (474)
. +....+.++.+.+... ....+.+.|.++||.+..+.. +.+|++ ...
T Consensus 298 ~~~~~~~~~~~~~i~~~~~~~~--------------~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~n 363 (371)
T PF00266_consen 298 EVLGPDDEPRRPSIVSFNLPGS--------------DADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYN 363 (371)
T ss_dssp EESSSSCGGBGTTEEEEEETTS--------------SHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTS
T ss_pred eEeeecccccccceEEEeecCC--------------CHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCC
Confidence 1 1123455556655321 125778888888999887421 456775 566
Q ss_pred cHHHHHHH
Q 011959 456 SSDDIQHT 463 (474)
Q Consensus 456 t~e~i~~~ 463 (474)
|++|||++
T Consensus 364 t~~dv~~l 371 (371)
T PF00266_consen 364 TEEDVDRL 371 (371)
T ss_dssp SHHHHHHH
T ss_pred CHHHHhhC
Confidence 99999875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-15 Score=150.91 Aligned_cols=233 Identities=15% Similarity=0.134 Sum_probs=156.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
++++...+|.+.++++.+ .+.+++++||++|+..++.. ...+++.|++..++|.+.........+..
T Consensus 48 ~~~p~~~~le~~lA~l~g-~~~v~~~~gg~~Ai~~~l~a--ll~~GD~Vl~~~p~y~~~~~~~~~~~~~~---------- 114 (382)
T TIGR02080 48 SGNPTRDLLQQALAELEG-GAGAVVTNTGMSAIHLVTTA--LLGPDDLLVAPHDCYGGTYRLLNALAKKG---------- 114 (382)
T ss_pred CCCchHHHHHHHHHHHhC-CCcEEEEcCHHHHHHHHHHH--HcCCCCEEEEcCCCcHHHHHHHHHHHhhc----------
Confidence 456667888888888874 57899999999999999984 24456788888888876443222221111
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~ 294 (474)
++ .+..++..|++++++.++. ++++|+++.++|++|.+.+ +++|.++|+++|++||+||+|..+ ..
T Consensus 115 ~~------~v~~~d~~d~~~l~~ai~~---~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~~~ 181 (382)
T TIGR02080 115 CF------RVLFVDQGDEQALRAALAQ---KPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSPALQ 181 (382)
T ss_pred Ce------EEEEECCCCHHHHHHhcCc---CceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 00 1222233478999988863 5788899988889999988 899999999999999999999533 21
Q ss_pred CCCccccccCCCCcee--ehhhhcCC--CcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCH
Q 011959 295 AYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (474)
Q Consensus 295 g~~~~~~~~g~~pdi~--t~sK~l~~--G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (474)
. . . ..| .|++ +++|.++| +++.|++++ ++++.+.+.. .......+.+|+.+..++..++.+. ..
T Consensus 182 ~-p--l-~~g--aDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~---~~~~~g~~~sp~~a~l~lr~l~tl~--~R 250 (382)
T TIGR02080 182 N-P--L-ALG--ADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAW---WANNLGVTGGAFDSYLTLRGLRTLV--AR 250 (382)
T ss_pred C-c--h-hhC--CCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHH---HHHccCCCCCHHHHHHHHcccchHH--HH
Confidence 1 1 1 123 3555 79999974 578999866 6777776652 2222244678888777766665442 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCee------------------EEeeeceeEEEEEe
Q 011959 370 YEYLNKITGELTQGIIDAGKKAGHAI------------------CGGYISGMFGFFFT 409 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~------------------~v~~~g~~~~i~~~ 409 (474)
.++..++...+.+.|++ ++.+. ...+.|.|+.|++.
T Consensus 251 ~~~~~~na~~~a~~L~~----~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 304 (382)
T TIGR02080 251 MRLQQRNAQAIVEYLQT----QPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELK 304 (382)
T ss_pred HHHHHHHHHHHHHHHHh----CCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEec
Confidence 45556666666666654 22211 12367889999885
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.9e-16 Score=154.59 Aligned_cols=234 Identities=15% Similarity=0.103 Sum_probs=154.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
++++...+|.+.++++. +.+.+++++||+.|+..++.. ....+++||+....|.+ +.......-
T Consensus 67 ~~~p~~~~le~~lA~l~-g~~~al~~~sG~~Ai~~~l~a--ll~~Gd~Vl~~~~~~~~-t~~~~~~~~------------ 130 (403)
T PRK07810 67 YGNPTVSMFEERLRLIE-GAEACFATASGMSAVFTALGA--LLGAGDRLVAARSLFGS-CFVVCNEIL------------ 130 (403)
T ss_pred CCCchHHHHHHHHHHHh-CCCcEEEECChHHHHHHHHHH--HhCCCCEEEEccCCcch-HHHHHHHHH------------
Confidence 35555778888898888 466899999999999998874 23456677766544433 332221100
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cccc
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRL 294 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~ 294 (474)
...+.++..++.+|++++++.++. ++++|++|.+.|++|.+.+ +++|.++|+++|++||+||+|. ++..
T Consensus 131 ---~~~G~~v~~vd~~d~~~l~~ai~~---~tklV~~esp~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a~~~~~ 200 (403)
T PRK07810 131 ---PRWGVETVFVDGEDLSQWEEALSV---PTQAVFFETPSNPMQSLVD----IAAVSELAHAAGAKVVLDNVFATPLLQ 200 (403)
T ss_pred ---HHcCcEEEEECCCCHHHHHHhcCc---CceEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCCccccC
Confidence 001123555666789999998873 5789999999999999988 9999999999999999999994 3211
Q ss_pred CCCccccccCCCCcee--ehhhhcCC-Ccce-EEEEecHHHHH-hhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCH
Q 011959 295 AYGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRRDIME-MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (474)
Q Consensus 295 g~~~~~~~~g~~pdi~--t~sK~l~~-G~~i-G~~~~~~~i~~-~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (474)
. . . ..| .|++ +++|.+++ |.++ |+++++++.+. .++. .........+|..++.++..|+.+ +..
T Consensus 201 ~-~--~-~~g--aDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~---~~~~~g~~~s~~~a~l~l~~L~tl--~~R 269 (403)
T PRK07810 201 R-G--L-PLG--ADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQK---LMRHTGPALSAFNAWVLLKGLETL--ALR 269 (403)
T ss_pred C-h--h-hcC--CcEEEccCCceecCCcCceeEEEEeChHHHHHHHHH---HHHHhCCCCCHHHHHHHHhccCcH--HHH
Confidence 1 1 1 123 4655 68899985 7777 66777877554 2331 111122356788888777777644 345
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCeeEE------------------eeeceeEEEEEec
Q 011959 370 YEYLNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFTE 410 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v------------------~~~g~~~~i~~~~ 410 (474)
.++..++..++.+.|++. +.+..| .+.|.++.|++..
T Consensus 270 ~~~~~~~a~~~a~~L~~~----p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 324 (403)
T PRK07810 270 VRHSNASALRIAEFLEGH----PAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDA 324 (403)
T ss_pred HHHHHHHHHHHHHHHhcC----CCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 556666666666666542 322222 2678899998853
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-15 Score=151.46 Aligned_cols=238 Identities=16% Similarity=0.158 Sum_probs=157.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
+.++...+|.++++++. +.+.+++++||++|+..++.. ....++.||+..+.|++.......... ..
T Consensus 61 ~~~p~~~~le~~lA~l~-g~~~~i~~ssG~~Ai~~~l~a--ll~~GD~Vi~~~~~y~~~~~~~~~~~~----------~~ 127 (398)
T PRK08249 61 NTNPTVQAFEEKVRILE-GAEAATAFSTGMAAISNTLYT--FLKPGDRVVSIKDTYGGTNKIFTEFLP----------RM 127 (398)
T ss_pred CCChHHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHH--hcCCCCEEEEcCCchHHHHHHHHHHHh----------hC
Confidence 35666788888888887 456788899999999999874 234567888888888763221111000 00
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
| .++..++..|++++++.++. ++++|++|.++|++|.+.+ +++|.++|++||++||+|++|..+...
T Consensus 128 G------i~v~~vd~~d~e~l~~~i~~---~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~~~~ 194 (398)
T PRK08249 128 G------VDVTLCETGDHEQIEAEIAK---GCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVVVDNTFATPINQ 194 (398)
T ss_pred C------eEEEEcCCCCHHHHHHhcCC---CCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCcCccccC
Confidence 1 12334445589999998863 5789999988889999998 999999999999999999999633111
Q ss_pred CCccccccCCCCcee--ehhhhcCC-Ccce-EEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G~~i-G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
.. .....|++ +++|.++| |.++ |++++++++++.+... ........++..+..++..|+.+. ...+
T Consensus 195 ~~-----l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~---~~~~g~~~s~~~a~l~l~~l~tL~--~R~~ 264 (398)
T PRK08249 195 NP-----LALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHY---REINGATMDPMSAYLILRGMKTLK--LRVR 264 (398)
T ss_pred Cc-----hhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHH---HHhcCCCCCHHHHHHHHhCcchHH--HHHH
Confidence 11 12234554 68999985 5565 6667888888877531 122334567777777777766553 3445
Q ss_pred HHHHHHHHHHHHHHHHhh----hcC-Ce---------eEEeeeceeEEEEEe
Q 011959 372 YLNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (474)
+..++...+.+.|++... .|| +. ....+.|.++.|++.
T Consensus 265 ~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~ 316 (398)
T PRK08249 265 QQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLK 316 (398)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEc
Confidence 666777777777664210 011 00 012356888888885
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-15 Score=148.00 Aligned_cols=232 Identities=19% Similarity=0.155 Sum_probs=153.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
++++...+|.+.++++. +.+..++++||++|+..++. .+..+++||+.++.|++.........
T Consensus 49 ~~~pt~~~le~~la~l~-g~~~~~~~~sG~~ai~~~~~---ll~~Gd~Vl~~~~~y~~t~~~~~~~~------------- 111 (366)
T PRK08247 49 TGNPTRGVLEQAIADLE-GGDQGFACSSGMAAIQLVMS---LFRSGDELIVSSDLYGGTYRLFEEHW------------- 111 (366)
T ss_pred CCCchHHHHHHHHHHHh-CCCcEEEEcCHHHHHHHHHH---HhCCCCEEEEecCCcCcHHHHHHHHh-------------
Confidence 35666788888888888 44567889999999988764 34566889999999987432221110
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCccc
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGFRL 294 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~r~ 294 (474)
...+.++..++..|++++++.++. ++++|++|.++|+.|.+.+ +++|.++|++||+++|+||+| +++..
T Consensus 112 ---~~~G~~v~~vd~~d~~~l~~~i~~---~tklv~le~P~NP~~~~~d----l~~I~~la~~~g~~lIvD~t~~~~~~~ 181 (366)
T PRK08247 112 ---KKWNVRFVYVNTASLKAIEQAITP---NTKAIFIETPTNPLMQETD----IAAIAKIAKKHGLLLIVDNTFYTPVLQ 181 (366)
T ss_pred ---hccCceEEEECCCCHHHHHHhccc---CceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCcccccc
Confidence 001123555566689999998863 5788888887777766555 999999999999999999999 43311
Q ss_pred CCCccccccCCCCcee--ehhhhcCC--CcceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCH
Q 011959 295 AYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (474)
Q Consensus 295 g~~~~~~~~g~~pdi~--t~sK~l~~--G~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (474)
.. .+ .+ .|++ ++||.++| ++..|+++++ +++.+.+.. .........+|+.+..++..|+.+ +..
T Consensus 182 -~p--~~-~g--~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~---~~~~~g~~~s~~~a~l~~~~l~tl--~~r 250 (366)
T PRK08247 182 -RP--LE-EG--ADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAY---YQNAAGAVLSPFDSWLLIRGMKTL--ALR 250 (366)
T ss_pred -Cc--hh-cC--CcEEEeecceeccCCCceeeeEEecChHHHHHHHHH---HHHhcCCCCChHHHHHHHhccCcH--HHH
Confidence 11 11 22 3544 79999985 4788999886 667766652 122223456777777666666433 234
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCee--EEeeeceeEEEEEe
Q 011959 370 YEYLNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGFFFT 409 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~--~v~~~g~~~~i~~~ 409 (474)
.++.+++.+.+.+.|++ ++.+. ..++.|.|+.|++.
T Consensus 251 ~~~~~~~a~~l~~~L~~----~p~v~~v~~P~~gg~~sf~~~ 288 (366)
T PRK08247 251 MRQHEENAKAIAAFLNE----QPGVTDVLYPGRGGMLSFRLQ 288 (366)
T ss_pred HHHHHHHHHHHHHHHHh----CCCeeEEecCCcCcEEEEEEC
Confidence 44556666666666654 34332 24457888888874
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-15 Score=148.92 Aligned_cols=233 Identities=15% Similarity=0.132 Sum_probs=155.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
++++...+|.++|+++.+ .+.+++++||++|+..++.. ....++.|++.++.|++............
T Consensus 49 ~~~pt~~~L~~~lA~l~g-~~~~i~~~sg~~Ai~~~l~~--l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~---------- 115 (386)
T PRK08045 49 RGNPTRDVVQRALAELEG-GAGAVLTNTGMSAIHLVTTV--FLKPGDLLVAPHDCYGGSYRLFDSLAKRG---------- 115 (386)
T ss_pred CCCccHHHHHHHHHHHhC-CCeEEEECCHHHHHHHHHHH--HcCCCCEEEEcCCCcHHHHHHHHHHHhhC----------
Confidence 456667788888888875 46799999999999999984 23456788888888876443322221110
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~ 294 (474)
++ .+..++..|++++++.++. ++++|+++.++|++|.+.+ +++|.++|+++|+++|+||+|... ..
T Consensus 116 gi------~v~~vd~~d~e~l~~~l~~---~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~~~~ 182 (386)
T PRK08045 116 CY------RVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSPALQ 182 (386)
T ss_pred Ce------EEEEeCCCCHHHHHHhccc---CCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCccccC
Confidence 00 1122223478999888863 5788999988899999998 899999999999999999999533 21
Q ss_pred CCCccccccCCCCcee--ehhhhcCC--CcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCH
Q 011959 295 AYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (474)
Q Consensus 295 g~~~~~~~~g~~pdi~--t~sK~l~~--G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (474)
.. .....|++ +++|.++| +...|++++ ++++.+.+.. .......+.+|+.+..++..|+.+ +..
T Consensus 183 -~p-----l~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~---~~~~~g~~~~p~~~~l~~rgl~tl--~~R 251 (386)
T PRK08045 183 -NP-----LALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW---WANNIGVTGGAFDSYLLLRGLRTL--VPR 251 (386)
T ss_pred -Cc-----hhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhccH--HHH
Confidence 11 12233655 68999984 477888866 5777666642 112224457888887777777543 334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCeeE------------------EeeeceeEEEEEe
Q 011959 370 YEYLNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFT 409 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~~------------------v~~~g~~~~i~~~ 409 (474)
.++..++...+.+.|++. +.+.. ..+.|.|+.|++.
T Consensus 252 ~~~~~~na~~la~~L~~~----p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~ 305 (386)
T PRK08045 252 MELAQRNAQAIVKYLQTQ----PLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD 305 (386)
T ss_pred HHHHHHHHHHHHHHHHcC----CCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEec
Confidence 455666666666666542 22111 2366888888885
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-16 Score=137.48 Aligned_cols=281 Identities=17% Similarity=0.191 Sum_probs=182.0
Q ss_pred HHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCC
Q 011959 142 NVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKG 220 (474)
Q Consensus 142 ~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~ 220 (474)
.++...+.+--| ..|.+.+..|..|.++..+|.. ..+|+++|+.+.++|.-+...+ ...+.
T Consensus 72 k~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~-c~PGkeKIl~cPPtysMY~v~A-~iNd~---------------- 133 (375)
T KOG0633|consen 72 KRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCV-CDPGKEKILDCPPTYSMYVVDA-AINDA---------------- 133 (375)
T ss_pred chhhhhcccCCCCCccceEEecCcHHHHHHHHhhe-ecCCccceeecCCcceeEEEEe-ecCCc----------------
Confidence 455555555555 5789999999999999999843 4467899999999985543221 11222
Q ss_pred CCCceEEccCC-----CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc
Q 011959 221 ATYETLTAPFN-----DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294 (474)
Q Consensus 221 ~~~~~~~~~~~-----d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~ 294 (474)
.++.+|.+ +.+++.+.++.. ..++++++.++.|++|.+...++ +.+|.+.-+ +.++++||+|..| ..
T Consensus 134 ---eVvkvpl~pdF~lnvdai~evl~~d-s~iK~~F~tSPgNPtg~~ik~~d-i~KiLe~p~--nglVVvDEAYidFsg~ 206 (375)
T KOG0633|consen 134 ---EVVKVPLNPDFSLNVDAIAEVLELD-SKIKCIFLTSPGNPTGSIIKEDD-ILKILEMPD--NGLVVVDEAYIDFSGV 206 (375)
T ss_pred ---eEEEecCCCCccccHHHHHHHHhcc-ccceEEEEcCCCCCCcccccHHH-HHHHHhCCC--CcEEEEeeeeEeeccc
Confidence 23333332 688888888753 36889999888888999988555 555555444 7899999999888 43
Q ss_pred CCCccccccCCCCcee---ehhhhcC-CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH--hcC-C
Q 011959 295 AYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR--LKE-P 367 (474)
Q Consensus 295 g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~--~~~-~ 367 (474)
+. ...+..-.|+++ ||||++| +|+|+|+...+.++.+.+...+ ..|+.+..+..+|+++|.- ++. +
T Consensus 207 ~S--~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~K-----aPYNiS~~~s~~AL~Als~~n~kkme 279 (375)
T KOG0633|consen 207 ES--RMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAK-----APYNISVAGSVAALAALSDSNGKKME 279 (375)
T ss_pred cc--cchHhHhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHhcc-----CCccccchhHHHHHHhcCcccchHHH
Confidence 32 222233357766 7999999 8999999999999988887422 2566667777788877751 111 3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCeeEE--eeeceeEEEEEecCCCcCcccccccchHHHHHHH-HHHHHCCeEeccc
Q 011959 368 GTYEYLNKITGELTQGIIDAGKKAGHAICG--GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFY-RGMLEEGVYFAPS 444 (474)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v--~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gv~v~~~ 444 (474)
+.++.+.+.+.+|...|.++ +...+. ....+|+.+++.+. +......+. +.+-+.||+++-.
T Consensus 280 ~~rdaiv~er~RL~keLt~v----~~~~~~~gg~daNFiLi~v~~~-----------~n~~akkly~q~at~~gVvVRfr 344 (375)
T KOG0633|consen 280 DVRDAIVRERERLFKELTEV----PFLNDYPGGSDANFILIEVTGG-----------DNGMAKKLYKQDATKMGVVVRFR 344 (375)
T ss_pred HHHHHHHHHHHHHHHHhhcC----ccccCCCCcccccEEEEEEcCC-----------CcHHHHHHHHHHHHhcceEEEEc
Confidence 34444444445555555443 322221 22456777776543 222334444 4445779998765
Q ss_pred CC-----cceEEecCCcHHHHHHHHHHHHHH
Q 011959 445 QF-----EAGFTSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 445 ~~-----~~~~~~~~~t~e~i~~~l~~l~~~ 470 (474)
+. +.+|++ ..|+|+.+.+++.|+++
T Consensus 345 gse~~c~G~lRit-vGt~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 345 GSEEGCKGYLRIT-VGTPEENTVLMKCLKQF 374 (375)
T ss_pred CCccccceeEEEE-cCCcccchHHHHHHHhh
Confidence 42 245554 55778888888888765
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-15 Score=150.39 Aligned_cols=238 Identities=14% Similarity=0.102 Sum_probs=154.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
++++...+|.++++++. +.+..++++||+.|+..++.. ....+++||+.++.|.+.......... ..
T Consensus 62 ~~~p~~~~Le~~lA~l~-G~~~~~~~~sG~~Ai~~~l~~--~l~~Gd~Vl~~~~~y~~~~~~~~~~~~----------~~ 128 (398)
T PRK07504 62 YSNPTVDMFEKRMCALE-GAEDARATASGMAAVTAAILC--QVKAGDHVVAARALFGSCRYVVETLLP----------RY 128 (398)
T ss_pred CCCchHHHHHHHHHHHh-CCCeeeEecCHHHHHHHHHHH--HhCCCCEEEEcCCchhHHHHHHHHHHh----------hc
Confidence 34566788888888888 556667788999999887763 344567888888777664322211100 00
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
| .++..++..|++++++.++ +++++|++|.++|++|.+.+ +++|.++|+++|+++|+||+|......
T Consensus 129 G------~~v~~vd~~d~e~l~~ai~---~~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~~~~~ 195 (398)
T PRK07504 129 G------IESTLVDGLDLDNWEKAVR---PNTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLVVDNVFATPLFQ 195 (398)
T ss_pred C------eEEEEECCCCHHHHHHhcC---cCceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEEEECCccccccC
Confidence 1 1234444458999998886 36789999999999999998 999999999999999999999522111
Q ss_pred CCccccccCCCCcee--ehhhhcCC-CcceEE-EEecHHHHHh-hcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPVGA-YGGRRDIMEM-VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G~~iG~-~~~~~~i~~~-~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
.. ..+| .|++ +++|.+++ |+++|+ ++++++.++. ++. .........+|..++.++..|+.+ +...
T Consensus 196 ~~---~~~g--aDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~---~~~~~g~~~s~~~A~~~l~~L~tl--~~R~ 265 (398)
T PRK07504 196 KP---LELG--AHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQD---YFRHTGPSLSPFNAWTLLKGLETL--PVRV 265 (398)
T ss_pred Cc---hhhC--CCEEEeeccccccCCccceEEEEEeCcHHHHHHHHH---HHHHhCCCCCHHHHHHHHhccchH--HHHH
Confidence 11 1123 4655 68999985 889865 5677766542 321 111112356777877777777655 3455
Q ss_pred HHHHHHHHHHHHHHHHHh--h--hcC-Ce---------eEEeeeceeEEEEEe
Q 011959 371 EYLNKITGELTQGIIDAG--K--KAG-HA---------ICGGYISGMFGFFFT 409 (474)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~--~--~~~-~~---------~~v~~~g~~~~i~~~ 409 (474)
++..++...+.+.|++.. . .|| +. ...++.|.|+.|++.
T Consensus 266 ~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~ 318 (398)
T PRK07504 266 RQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELK 318 (398)
T ss_pred HHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeC
Confidence 566677777777776531 0 011 00 012356889999985
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-15 Score=148.37 Aligned_cols=212 Identities=11% Similarity=0.081 Sum_probs=139.5
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCC
Q 011959 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~ 217 (474)
++...+|.+.++++. +.+.+++++||++|+..++.. ....+++||+.++.|++.....-.... ..++
T Consensus 49 nPt~~~lE~~lA~l~-g~~~~~~~~sG~~Ai~~al~a--ll~~GD~Vl~~~~~y~~t~~~~~~~~~----------~~gi 115 (377)
T TIGR01324 49 TLTHFALQDAMCELE-GGAGCYLYPSGLAAVTNSILA--FVKAGDHVLMVDSAYEPTRYFCDIVLK----------RMGV 115 (377)
T ss_pred CccHHHHHHHHHHHh-CCCcEEEECcHHHHHHHHHHH--hcCCCCEEEEcCCCcHHHHHHHHHHHH----------hcCc
Confidence 334466777777766 567899999999999999984 244567888888898874321111000 0111
Q ss_pred CCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccCC
Q 011959 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAY 296 (474)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~ 296 (474)
++..++.++.+.+++.++ +++++|++|.+.|++|.+.+ +++|.++|++||+++|+||+|. |+.
T Consensus 116 ------~v~~~d~~~~e~l~~~i~---~~tklV~lesp~Np~g~~~d----l~~I~~la~~~g~~livD~t~a~g~~--- 179 (377)
T TIGR01324 116 ------DITYYDPLIGEDIATLIQ---PNTKVLFLEAPSSITFEIQD----IPAIAKAARNPGIVIMIDNTWAAGLL--- 179 (377)
T ss_pred ------EEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCccccc---
Confidence 233333444577888776 36889999999999988887 9999999999999999999994 331
Q ss_pred CccccccCCCCcee--ehhhhcCC--CcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 297 GGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 297 ~~~~~~~g~~pdi~--t~sK~l~~--G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
+.. .....|++ +++|.++| +.-.|+++++++.++.+.. ..... ....+|..+...+..++.+ .-..++
T Consensus 180 -~~p--l~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~--~~~~~-G~~l~p~~a~~~~rgl~tl--~~R~~~ 251 (377)
T TIGR01324 180 -FKP--LEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLRE--HSYLM-GQMVDADDAYTTLRGLRTL--GVRLKQ 251 (377)
T ss_pred -cCc--cccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHH--HHHHh-CCCCCHHHHHHHHhhhhhH--HHHHHH
Confidence 111 12234665 57999984 4668888998887776652 11122 2345666666655555533 234556
Q ss_pred HHHHHHHHHHHHHH
Q 011959 373 LNKITGELTQGIID 386 (474)
Q Consensus 373 ~~~~~~~l~~~L~~ 386 (474)
..++...+.+.|++
T Consensus 252 ~~~~a~~la~~L~~ 265 (377)
T TIGR01324 252 HQESSLAIAKWLSE 265 (377)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666665
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=152.34 Aligned_cols=239 Identities=14% Similarity=0.073 Sum_probs=154.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
+++...+|.+.++++. +.+.+++++||+.|+..++.. ....++.||+..+.|.+ +...+....
T Consensus 57 ~~p~~~~le~~lA~l~-g~~~av~~~sG~~Ai~~~l~a--l~~~Gd~Vi~~~~~y~~-t~~~~~~~~------------- 119 (391)
T TIGR01328 57 GNPTVSNLEGRIAFLE-GTEAAVATSSGMGAIAATLLT--ILKAGDHLISDECLYGC-TFALLEHAL------------- 119 (391)
T ss_pred CCchHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHH--HhCCCCEEEEecCcchH-HHHHHHHHH-------------
Confidence 4556678888888888 556789999999999988873 23456677776665543 222221100
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (474)
...+.++..++.+|++++++.+.. ++++|++|.++|++|.+.+ +++|.++|++||+++|+||+|.....+.
T Consensus 120 --~~~G~~~~~vd~~d~e~l~~~i~~---~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~livD~a~a~~~~~~ 190 (391)
T TIGR01328 120 --TKFGIQVDFINMAIPEEVKAHIKD---NTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVIVDNTFATPMLTN 190 (391)
T ss_pred --hcCCeEEEEECCCCHHHHHHhhcc---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCchhccCC
Confidence 001123555666689999888863 5789999998899999888 9999999999999999999995211111
Q ss_pred CccccccCCCCcee--ehhhhcCC-Ccc-eEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 297 GGAQEYFGVTPDLT--TLGKIIGG-GLP-VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 297 ~~~~~~~g~~pdi~--t~sK~l~~-G~~-iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
..+...|++ +++|.+++ |.+ .|++++++++++.++........ ....+|..++.++..|+.+ +..+++
T Consensus 191 -----~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~-g~~l~~~~a~l~l~~L~tl--~~r~~~ 262 (391)
T TIGR01328 191 -----PVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMT-GSVISPFDAWLILRGLKTL--NIRMKR 262 (391)
T ss_pred -----chhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCC-CCCCCcHHHHHHHhCcCcH--HHHHHH
Confidence 122234655 68899985 666 46678889988777631111111 2345677766666655433 344566
Q ss_pred HHHHHHHHHHHHHHHhh----hcC-Ce---------eEEeeeceeEEEEEe
Q 011959 373 LNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (474)
..++..++.+.|++... .+| +. ...++.|.++.|+++
T Consensus 263 ~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~ 313 (391)
T TIGR01328 263 HSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELK 313 (391)
T ss_pred HHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeC
Confidence 67777777777765310 011 00 012356888888885
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-15 Score=147.54 Aligned_cols=237 Identities=16% Similarity=0.134 Sum_probs=148.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++...+|.+.+++++ +.+.+++++||++|+..++.. ....++.||+....|.+.........
T Consensus 59 ~~p~~~~le~~la~l~-g~~~~v~~ssG~~Ai~~al~a--l~~~Gd~Vi~~~~~y~~t~~~~~~~~-------------- 121 (390)
T PRK08133 59 TNPTVTMFQERLAALE-GAEACVATASGMAAILAVVMA--LLQAGDHVVSSRSLFGSTVSLFEKIF-------------- 121 (390)
T ss_pred CChHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHH--HhCCCCEEEEccCcchhHHHHHHHHH--------------
Confidence 3555678888888887 456789999999999999874 23456777776666554322111100
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (474)
...+.++..++.+|++++++.++. ++++|++|.++|++|.+.+ +++|.++|++||++||+|+++.......
T Consensus 122 --~~~G~~v~~vd~~d~~~l~~~i~~---~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD~t~~~~~~~~ 192 (390)
T PRK08133 122 --ARFGIETTFVDLTDLDAWRAAVRP---NTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVDNCFCTPALQQ 192 (390)
T ss_pred --HHcCcEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 001123555666789999988863 6789999988888999988 9999999999999999999984221111
Q ss_pred CccccccCCCCcee--ehhhhcCC-Ccce-EEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 297 GGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 297 ~~~~~~~g~~pdi~--t~sK~l~~-G~~i-G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
. . ..| .|++ +++|.+++ |.++ |++++++++++.+.. .........++..+..++..++.+ ....++
T Consensus 193 p--l-~~g--~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~---~~~~~g~~~~~~~a~~~l~gl~tl--~~R~~~ 262 (390)
T PRK08133 193 P--L-KLG--ADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFG---FLRTAGPTLSPFNAWVFLKGLETL--SLRMEA 262 (390)
T ss_pred c--h-hhC--CcEEEeecceeecCCcceEeEEEEcCHHHHHHHHH---HHHHhCCCCCHHHHHHHHcccchH--HHHHHH
Confidence 1 1 123 3655 68999985 7887 455778877665542 111122344566555544444322 233445
Q ss_pred HHHHHHHHHHHHHHHhh----hcC-Cee---------EEeeeceeEEEEEe
Q 011959 373 LNKITGELTQGIIDAGK----KAG-HAI---------CGGYISGMFGFFFT 409 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~----~~~-~~~---------~v~~~g~~~~i~~~ 409 (474)
..++...+.+.|++... .+| +.. ...+.|.|+.|++.
T Consensus 263 ~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~ 313 (390)
T PRK08133 263 HSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVK 313 (390)
T ss_pred HHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence 55666666666654310 011 000 12466888899885
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-14 Score=143.91 Aligned_cols=214 Identities=17% Similarity=0.150 Sum_probs=136.0
Q ss_pred CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCcccCCCccccccC-CCCce
Q 011959 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGFRLAYGGAQEYFG-VTPDL 309 (474)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~r~g~~~~~~~~g-~~pdi 309 (474)
|.++++++++. .+..|++....+. +...| +++|+++|++||++|++|++| .|+..+..+..+... -..|+
T Consensus 208 D~d~l~~~~~~---~~plvii~g~S~~-~~~~d----l~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~ 279 (493)
T PRK13580 208 DYDEIAALARE---FKPLILVAGYSAY-PRRVN----FAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADI 279 (493)
T ss_pred CHHHHHHHHhh---cCCEEEEeCcccc-CCCcC----HHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcE
Confidence 78999999875 3455555554444 44667 999999999999999999999 566222222111111 13565
Q ss_pred e--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHH
Q 011959 310 T--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGI 384 (474)
Q Consensus 310 ~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L 384 (474)
+ |++|+|.|. +.|++++++++.+.+....+ +.+++ ..+| .++++..++..+.++ ++.+++.++.++|++.|
T Consensus 280 vtgT~hKaL~GP-~GG~I~~~~~l~~~L~~a~P-~i~gg-~l~p-~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L 355 (493)
T PRK13580 280 VTTTTHKTLRGP-RGGLVLAKKEYADAVDKGCP-LVLGG-PLPH-VMAAKAVALAEARTPEFQKYAQQVVDNARALAEGF 355 (493)
T ss_pred EEeCChhhccCC-CeEEEEecHHHHHHHhhCCC-cccCC-CccH-HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 5 689999542 36778889999988853322 23332 2233 444444456555443 37889999999999999
Q ss_pred HHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC----------cceEEe--
Q 011959 385 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----------EAGFTS-- 452 (474)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------~~~~~~-- 452 (474)
.+.+.+. .. -.....++.+.+.+. ......+.+.|.+.||++.+... ..+|+.
T Consensus 356 ~~~G~~v--v~-ggTdshIV~V~lg~~------------~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~ 420 (493)
T PRK13580 356 LKRGARL--VT-GGTDNHLVLIDVTSF------------GLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTP 420 (493)
T ss_pred HhcCCCc--cC-CCCCCCEEEEEeCCH------------HHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccc
Confidence 8764321 10 011234555555321 11224567788999999975432 235663
Q ss_pred c----CCcHHHHHHHHHHHHHHHh
Q 011959 453 L----AHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 453 ~----~~t~e~i~~~l~~l~~~~~ 472 (474)
. .++++|++++++.|.++++
T Consensus 421 A~ttrg~teedi~~iad~l~~~l~ 444 (493)
T PRK13580 421 ALTTLGMGSDEMDEVAELIVKVLS 444 (493)
T ss_pred hhhhcCCCHHHHHHHHHHHHHHHH
Confidence 2 5579999999999998875
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-14 Score=147.58 Aligned_cols=280 Identities=19% Similarity=0.207 Sum_probs=162.7
Q ss_pred HHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHh----cCCCCccCCCCCCCCC
Q 011959 143 VLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK----AGSGVATLGLPDSPGV 217 (474)
Q Consensus 143 ~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~----~g~~~~~~~~~~~~g~ 217 (474)
++.++++++++ +.+.+.+++||+++++.++. ++...++++|++.++ +|+.....+.. .|..+..++.... .
T Consensus 116 e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~-a~~~~~g~~Vlv~~~-~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~- 191 (447)
T PRK00451 116 EYQTMICELTGMDVANASMYDGATALAEAALM-AVRITKRKKVLVSGA-VHPEYREVLKTYLKGQGIEVVEVPYEDG-V- 191 (447)
T ss_pred HHHHHHHHHhCCCcceEEecCcHHHHHHHHHH-HHHhcCCCEEEEeCc-cCHHHHHHHHHHHHhCCcEEEEecCCCC-C-
Confidence 44466688876 45678999999998887776 323345677777665 55544444332 2332222111100 1
Q ss_pred CCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE--eccccCcccC
Q 011959 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF--DEVMTGFRLA 295 (474)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~--DEv~~g~r~g 295 (474)
-|++++++.++ +++++|+++.. +++|.+.+ +++|.++|+++|+++|+ |.+..|+.
T Consensus 192 -------------~d~~~l~~~i~---~~t~~v~l~~p-n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~~-- 248 (447)
T PRK00451 192 -------------TDLEALEAAVD---DDTAAVVVQYP-NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGLL-- 248 (447)
T ss_pred -------------CCHHHHHHhcC---CCeEEEEEECC-CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhccC--
Confidence 17899998886 35778777765 67899988 99999999999999998 65544331
Q ss_pred CCccccccCCCCcee-----ehhhhcC-CCcceEEEEecHHHHHhhcCC------------------------CCccc-c
Q 011959 296 YGGAQEYFGVTPDLT-----TLGKIIG-GGLPVGAYGGRRDIMEMVAPA------------------------GPMYQ-A 344 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~-----t~sK~l~-~G~~iG~~~~~~~i~~~~~~~------------------------~~~~~-~ 344 (474)
..... ...|++ .|||.+. +|+++|++++++++++.+... .+..+ .
T Consensus 249 --~~~~~--~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
T PRK00451 249 --KPPGE--YGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKAT 324 (447)
T ss_pred --CCccc--CCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeecccccccccccccc
Confidence 01112 234665 3567666 678999999999988875210 00011 1
Q ss_pred cCCCCChHHH-HHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccc
Q 011959 345 GTLSGNPLAM-TAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (474)
Q Consensus 345 ~t~~~~~~~~-aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (474)
.+++.+...+ .++..+++.+.+ ++..+++.++.++++++|+++ +.. .+. .+.++.+...+-
T Consensus 325 ~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----~g~-~~~-~~~~~~~~~v~~--------- 389 (447)
T PRK00451 325 SNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEI----GGV-ELF-DGPFFNEFVVRL--------- 389 (447)
T ss_pred ccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhc----CCE-Eec-CCCeEEEEEEec---------
Confidence 1112222122 233334544432 445566666777777777654 211 111 122222111110
Q ss_pred ccchHHHHHHHHHHHHCCeEec----ccC---CcceEEec--CCcHHHHHHHHHHHHHHH
Q 011959 421 KSETTKFARFYRGMLEEGVYFA----PSQ---FEAGFTSL--AHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~v~----~~~---~~~~~~~~--~~t~e~i~~~l~~l~~~~ 471 (474)
+. ...++.+.|.++|+... +.. ...+|++. .+|+++++++++.|++++
T Consensus 390 -~~--~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 390 -PK--PAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred -CC--CHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 00 12578899999987642 111 12456654 589999999999998865
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-14 Score=145.61 Aligned_cols=237 Identities=17% Similarity=0.157 Sum_probs=154.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
+.++...+|+++++++.+. +..++++||++|+..++.. ....++.|++..+.|++.......... ..
T Consensus 57 ~~~p~~~~Le~~lA~l~g~-~~~v~~~sG~~Ai~~~l~a--ll~pGD~Vvv~~p~Y~~t~~~~~~~~~----------~~ 123 (405)
T PRK08776 57 SGNPTRDLLGEALAELEGG-AGGVITATGMGAINLVLNA--LLQPGDTLVVPHDAYGGSWRLFNALAK----------KG 123 (405)
T ss_pred CCChHHHHHHHHHHHHhCC-CceEEEcCHHHHHHHHHHH--HhCCCCEEEEccCCchHHHHHHHHHHH----------hc
Confidence 3455567788888887754 5567788899999988874 234567888888888763321111100 00
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC-ccc
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-FRL 294 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g-~r~ 294 (474)
+ ..+..++..|++++++.++. ++++|+++.++|++|.+.+ +++|.++|++||++||+||+|.. ...
T Consensus 124 g------~~v~~v~~~d~~~l~~~i~~---~tklV~l~~P~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~~~ 190 (405)
T PRK08776 124 H------FALITADLTDPRSLADALAQ---SPKLVLIETPSNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPALQ 190 (405)
T ss_pred C------cEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 1 12444555689999988863 5788888888888999877 99999999999999999999952 111
Q ss_pred CCCccccccCCCCcee--ehhhhcCC--CcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCH
Q 011959 295 AYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (474)
Q Consensus 295 g~~~~~~~~g~~pdi~--t~sK~l~~--G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (474)
.. .+ +| .|++ +.+|.++| ++..|++++ ++++.+.+.. ......+..+|+.+...+..++.+ +..
T Consensus 191 -~p--l~-~g--aDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~---~~~~~g~~~s~~~a~l~~~gl~tl--~~r 259 (405)
T PRK08776 191 -KP--LE-FG--ADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVW---WANALGLTGSPFDAFLTLRGLRTL--DAR 259 (405)
T ss_pred -Cc--cc-cc--CCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhCcH--HHH
Confidence 11 11 23 4555 67899984 467888866 5677666642 111223356888888877666544 446
Q ss_pred HHHHHHHHHHHHHHHHHHh--hh--cC-Ce---------eEEeeeceeEEEEEe
Q 011959 370 YEYLNKITGELTQGIIDAG--KK--AG-HA---------ICGGYISGMFGFFFT 409 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~--~~--~~-~~---------~~v~~~g~~~~i~~~ 409 (474)
.++..++...+.+.|++.- .+ +| +. ....+.|.|+.|++.
T Consensus 260 ~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 313 (405)
T PRK08776 260 LRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELE 313 (405)
T ss_pred HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEc
Confidence 6677777777777776531 00 11 00 012467889999985
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-14 Score=143.45 Aligned_cols=312 Identities=16% Similarity=0.116 Sum_probs=178.8
Q ss_pred CCHHHHHHHHHHHH-h-cCC------CCCCCHHHHHHH----HHHHhhCCCCCeEE-E---eCCHHHHHHHHHHHhHhhc
Q 011959 116 ADDQVLAALGETMK-K-GTS------FGAPCLLENVLA----EMVISAVPSIEMVR-F---VNSGTEACMGVLRLARAFT 179 (474)
Q Consensus 116 ~~p~v~~a~~~~~~-~-~~~------~~~~~~~~~~la----~~l~~~~~~~~~v~-~---~~sGseA~~~al~~ar~~~ 179 (474)
..|.|++++...+. + +.+ +++ +....++. ++..+.+...+..+ + .+||+.||.+++. ++.
T Consensus 46 ~s~~v~~a~~s~~~~ky~~G~~g~r~~~G-~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~---aL~ 121 (475)
T PLN03226 46 TSRAVMEALGSCLTNKYSEGLPGARYYGG-NEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYT---ALL 121 (475)
T ss_pred CCHHHHHHHhhHHhccccCCCCCCcCcCC-ChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHH---HhC
Confidence 46889999988883 3 211 122 22333332 23555564333333 2 3899999999998 444
Q ss_pred C-CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC------CHHHHHHHHhcCCCCeEEEEE
Q 011959 180 G-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------DVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 180 ~-~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~a~vi~ 252 (474)
+ ++.|+..+-...|+........|..+. ..+ ...+.+.+++| |+++|++++.++ +++.|++
T Consensus 122 ~pgD~Il~~d~~~gGhl~H~~~~~g~~~s------~~~----~~~~~~~y~~~~~~g~iD~d~Le~~l~~~--~pklIv~ 189 (475)
T PLN03226 122 QPHDRIMGLDLPHGGHLSHGYQTDGKKIS------ATS----IYFESMPYRLDESTGLIDYDKLEKKAMLF--RPKLIIA 189 (475)
T ss_pred CCCCEEEECCCCcCcchhhhhhhcccccc------cce----EEEEeeeeeecCCCCCcCHHHHHHHHhhc--CCeEEEE
Confidence 4 466665443222221111111111000 000 00012244455 899999998754 3445555
Q ss_pred -ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEe
Q 011959 253 -EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGG 327 (474)
Q Consensus 253 -ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~ 327 (474)
++++ |...+ +++|+++|++||++|++|++| .|+ ..+. .. ..++ ..|++ |++|+|.|. +.|++++
T Consensus 190 ~~S~~---s~~~D----~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~-~~-~p~~-~~Div~~t~hK~L~GP-~Gg~I~~ 258 (475)
T PLN03226 190 GASAY---PRDWD----YARMRKIADKVGALLMCDMAHISGLVAAQE-AA-SPFE-YCDVVTTTTHKSLRGP-RGGMIFF 258 (475)
T ss_pred ecCcC---CCccC----HHHHHHHHHHcCCEEEEEchhhhCcccCCC-CC-CCCC-CCeEEEecCcccccCC-CceEEEE
Confidence 5544 44555 888999999999999999999 566 3221 11 1122 35665 688999642 3466677
Q ss_pred cHHHH-----------Hh---hcCCCCcccccCCCCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhh
Q 011959 328 RRDIM-----------EM---VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 328 ~~~i~-----------~~---~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
++++. +. +.. ...... +-+.++..+++..++|+.+.+. .+.+++.++.++|++.|.+.
T Consensus 259 ~~~~~~~~~~g~~~~~d~~~~i~~-a~~~~~-~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~--- 333 (475)
T PLN03226 259 RKGPKPPKGQGEGAVYDYEDKINF-AVFPGL-QGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK--- 333 (475)
T ss_pred chhhcccccCCCccHHHHHHHhcc-ccCCcc-CCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC---
Confidence 77544 22 221 111112 2235566677777889988653 36788888899998888764
Q ss_pred cCCeeEEee-eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---------CcceEE------ecC
Q 011959 391 AGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFT------SLA 454 (474)
Q Consensus 391 ~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------~~~~~~------~~~ 454 (474)
++.....+ ...++.+.+.... ....++.+.|.+.||++.... .+.+|+ +..
T Consensus 334 -G~~l~~~~t~~hi~lv~~~~~g------------i~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g 400 (475)
T PLN03226 334 -GYKLVTGGTDNHLVLWDLRPLG------------LTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRG 400 (475)
T ss_pred -CCEEEcCCCCCCEEEEEccCCC------------CCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCC
Confidence 22211111 1344455552211 112456677778899886542 234554 468
Q ss_pred CcHHHHHHHHHHHHHHHh
Q 011959 455 HSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 455 ~t~e~i~~~l~~l~~~~~ 472 (474)
++++|++++.+.|.++++
T Consensus 401 ~~~~d~~~ia~~i~~~~~ 418 (475)
T PLN03226 401 LVEKDFEKVAEFLHRAVT 418 (475)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 899999999999999886
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-14 Score=139.50 Aligned_cols=305 Identities=14% Similarity=0.059 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHh--cCCCC------CCCHHHHHHHHHHHhhCC-CCCeE--EEeCCHHHHHHHHHHHhHhhcCCcEEEE
Q 011959 118 DQVLAALGETMKK--GTSFG------APCLLENVLAEMVISAVP-SIEMV--RFVNSGTEACMGVLRLARAFTGRERIIK 186 (474)
Q Consensus 118 p~v~~a~~~~~~~--~~~~~------~~~~~~~~la~~l~~~~~-~~~~v--~~~~sGseA~~~al~~ar~~~~~~~ii~ 186 (474)
+.+++++.+.+.+ +..+. ...+.+.++.+++++.++ +.+.+ +||+||||||..++..+|....+ .+++
T Consensus 37 ~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~-~~vi 115 (374)
T PLN03032 37 YGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPD-GILY 115 (374)
T ss_pred hHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCC-cEEE
Confidence 3456666666543 21111 124677888999999886 34555 99999999999999988865443 3566
Q ss_pred EeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCH
Q 011959 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 187 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
....-|-+..-++...+..+..++.. ..|. -|+++|++.|+++..++.+|++.-.++++|.+.|
T Consensus 116 ~s~~~H~Sv~kaa~~lg~~~~~V~~d-~~g~-------------id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp-- 179 (374)
T PLN03032 116 ASRESHYSVFKAARMYRMEAVKVPTL-PSGE-------------IDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD-- 179 (374)
T ss_pred eCCCceeHHHHHHHHcCCCCeEeeeC-CCCc-------------CcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC--
Confidence 66677776666665555433222111 1111 1899999999864445677778777788999999
Q ss_pred HHHHHHHHHHHHhC-----CEEEEeccccCc-cc--C--CCccccccCCCCceeeh--hhhcCCCcceEEEEecHHHHHh
Q 011959 267 DFLNAIRRITKENG-----ALLIFDEVMTGF-RL--A--YGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRRDIMEM 334 (474)
Q Consensus 267 ~~l~~l~~l~~~~g-----~llI~DEv~~g~-r~--g--~~~~~~~~g~~pdi~t~--sK~l~~G~~iG~~~~~~~i~~~ 334 (474)
+++|.++|++|| +++++|-++.|+ -. . ..+.+ ....|.+++ -|.++...++|.++.+++.++.
T Consensus 180 --i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~---~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~ 254 (374)
T PLN03032 180 --LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTF---RKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKA 254 (374)
T ss_pred --HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCC---CcCCcEEEECcccccCCCcCeEEEEEEchhhHh
Confidence 999999999997 589999999765 21 1 11111 123576765 4766656789999998887766
Q ss_pred hcCCCCccc--ccCCCCCh--HHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEE
Q 011959 335 VAPAGPMYQ--AGTLSGNP--LAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (474)
Q Consensus 335 ~~~~~~~~~--~~t~~~~~--~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (474)
+.....+.. ..|..++. ...+...++|+.+-. .+..++..++.+++.+.|++. +......+..+. +.
T Consensus 255 ~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~----~~~~~~~p~~~~--V~ 328 (374)
T PLN03032 255 LSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA----GLTCRLNELSST--VV 328 (374)
T ss_pred hccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCcEEECCCceE--EE
Confidence 642211110 11333332 344555566766554 345666777788888888764 322222222222 22
Q ss_pred EecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-cceEEecCCcHHHHHHHHHHHHH
Q 011959 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
|..+ .. . . +.+|-.+.+... -++.+...++++.+|++++-|++
T Consensus 329 f~~~-----------~~---~----~-~~~~w~l~~~~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 329 FERP-----------MD---E----A-FIKKWQLACEGDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred EcCC-----------Cc---H----h-HhheeeecccCCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 3221 11 1 1 224554444321 12233455688999999998875
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-14 Score=145.04 Aligned_cols=210 Identities=13% Similarity=0.046 Sum_probs=134.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhH---HHhcCCCCccCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLP 212 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~ 212 (474)
++++...+|.+.++++. +.+.+++++||++|+..++... ...++.||+.++.|.+..... ....|.
T Consensus 62 ~~~pt~~~Le~~lA~l~-g~~~~l~~~sgt~Ai~~~l~al--~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi-------- 130 (394)
T PRK07050 62 HATPTSLALAQRLAEIE-GGRHALLQPSGLAAISLVYFGL--VKAGDDVLIPDNAYGPNRDHGEWLARDFGI-------- 130 (394)
T ss_pred CCCHHHHHHHHHHHHHh-CCCeEEEeccHHHHHHHHHHHH--hCCCCEEEEecCCcccHHHHHHHHHHhcCe--------
Confidence 45666788888888887 5679999999999999999842 445678888888887643211 111121
Q ss_pred CCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C
Q 011959 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G 291 (474)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g 291 (474)
++..++..+.+++++.++. ++++|++|.+.|++|.+.+ +++|.++|++||++||+|++|. +
T Consensus 131 -----------~v~~vd~~~~~~l~~~i~~---~tklV~le~p~Np~~~~~d----i~~I~~ia~~~gi~livD~a~a~~ 192 (394)
T PRK07050 131 -----------TVRFYDPLIGAGIADLIQP---NTRLIWLEAPGSVTMEVPD----VPAITAAARARGVVTAIDNTYSAG 192 (394)
T ss_pred -----------EEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCccHhh----HHHHHHHHHHcCCEEEEECCcccc
Confidence 2333443456778888763 5788999888887776665 9999999999999999999994 2
Q ss_pred cccCCCccccccCCCCcee--ehhhhcCCC--cceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC
Q 011959 292 FRLAYGGAQEYFGVTPDLT--TLGKIIGGG--LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366 (474)
Q Consensus 292 ~r~g~~~~~~~~g~~pdi~--t~sK~l~~G--~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 366 (474)
.. ...-..| .|++ +++|.++|| .+.|++++ ++++++.++. .......+.+|..+..++ +-++.
T Consensus 193 ~~----~~~l~~G--aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~---~~~~~G~~~~~~~a~l~l---r~l~t 260 (394)
T PRK07050 193 LA----FKPFEHG--VDISVQALTKYQSGGSDVLMGATITADAELHAKLKL---ARMRLGIGVSADDCSLVL---RGLPS 260 (394)
T ss_pred cc----cCHHHcC--CeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHH---HHHhcCCCCCHHHHHHHH---cCCCc
Confidence 21 1111123 3655 689999854 57888765 6777777652 111112244555544333 32222
Q ss_pred -CCHHHHHHHHHHHHHHHHHH
Q 011959 367 -PGTYEYLNKITGELTQGIID 386 (474)
Q Consensus 367 -~~~~~~~~~~~~~l~~~L~~ 386 (474)
....++..++...+.+.|++
T Consensus 261 l~~Rl~~~~~~a~~la~~L~~ 281 (394)
T PRK07050 261 LQVRLAAHDRSALEVAEWLKA 281 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 22334444555555555554
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.6e-15 Score=145.61 Aligned_cols=212 Identities=16% Similarity=0.105 Sum_probs=137.8
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
++++...+|.++++++. + +.+++++||++|+..++.. ....+++||+.+++|++....+..... ..
T Consensus 48 y~~p~~~~Le~~lA~l~-~-~~~v~~~sG~~Ai~~~l~a--ll~~Gd~Vl~~~~~y~~~~~~~~~~l~----------~~ 113 (366)
T PRK07582 48 ASNPTWRALEAALGELE-G-AEALVFPSGMAAITAVLRA--LLRPGDTVVVPADGYYQVRALAREYLA----------PL 113 (366)
T ss_pred CCCccHHHHHHHHHHHc-C-CCEEEECCHHHHHHHHHHH--hcCCCCEEEEeCCCcHhHHHHHHHHHh----------cC
Confidence 45566778888888887 3 5677778899999988873 244567899988999775433211100 00
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
| .++..++.++... ... +++++|++|.++|++|.+.+ +++|.++|+++|+++|+||+|... .+
T Consensus 114 G------~~v~~v~~~~~~~--~~~----~~t~lV~le~p~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~-~~ 176 (366)
T PRK07582 114 G------VTVREAPTAGMAE--AAL----AGADLVLAETPSNPGLDVCD----LAALAAAAHAAGALLVVDNTTATP-LG 176 (366)
T ss_pred e------EEEEEECCCChHH--Hhc----cCceEEEEECCCCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCc-cc
Confidence 1 1344455444321 222 36788889888888888877 999999999999999999998421 11
Q ss_pred CCccccccCCCCcee--ehhhhcCC--CcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~--G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
. ..+....|++ +++|.++| |+++||+++ ++++++.+.. .........+|+.+..++..|+.+ +...
T Consensus 177 ~----~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~---~~~~~g~~~~~~~a~l~~r~l~tl--~~R~ 247 (366)
T PRK07582 177 Q----RPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVER---WRLLAGAIPGPFEAWLAHRSLGTL--GLRF 247 (366)
T ss_pred c----CchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHH---HHHHhCCCCCHHHHHHHHhccccH--HHHH
Confidence 0 1112234655 68999974 689999987 4777776652 112223345677766666555533 3344
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011959 371 EYLNKITGELTQGIIDA 387 (474)
Q Consensus 371 ~~~~~~~~~l~~~L~~~ 387 (474)
++..++...+.+.|++.
T Consensus 248 ~~~~~na~~la~~L~~~ 264 (366)
T PRK07582 248 ARQCANALAVAELLAGH 264 (366)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 66777777777777754
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.1e-14 Score=137.76 Aligned_cols=287 Identities=16% Similarity=0.091 Sum_probs=178.6
Q ss_pred CHHHHHHHHHHHhhCC-CCCe--EEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCC
Q 011959 138 CLLENVLAEMVISAVP-SIEM--VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 214 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~-~~~~--v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 214 (474)
.+.+.++.+++++.++ ..+. .+||+||||+|..++..+|.+.+++. |+....-|.....++...|.+...++.. .
T Consensus 64 ~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~-ii~s~~~H~Sv~ka~~~lg~~~~~V~~~-~ 141 (380)
T PRK02769 64 FDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGT-LYYSKDTHYSVSKIARLLRIKSRVITSL-P 141 (380)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcE-EEeCCCceehHHHHHHHcCCCCceeccC-C
Confidence 3567788888888886 2233 58999999999999998876555444 4444555665555555545433222111 0
Q ss_pred CCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC---CEEEEeccccC
Q 011959 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG---ALLIFDEVMTG 291 (474)
Q Consensus 215 ~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g---~llI~DEv~~g 291 (474)
.+. -|+++|++.+++.+..+.+|++.-..+++|.+.| +++|.++|++|| +++++|-+|.|
T Consensus 142 ~g~-------------id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg 204 (380)
T PRK02769 142 NGE-------------IDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSG 204 (380)
T ss_pred CCc-------------CcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccc
Confidence 110 1899999999865445788888888889999999 999999999998 69999999987
Q ss_pred c-cc--CC--CccccccCCCCceeehh--hhcCCCcceEEEEecHHHHHhhcCCCCccc--ccCCCC--ChHHHHHHHHH
Q 011959 292 F-RL--AY--GGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQ--AGTLSG--NPLAMTAGIHT 360 (474)
Q Consensus 292 ~-r~--g~--~~~~~~~g~~pdi~t~s--K~l~~G~~iG~~~~~~~i~~~~~~~~~~~~--~~t~~~--~~~~~aaa~aa 360 (474)
+ -. .. .+... . ..|.+++| |.+++..++|.++.+++..+.+........ -.|+.+ |..+.++..++
T Consensus 205 ~~~p~~~~~~~~d~~--~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~a 281 (380)
T PRK02769 205 MILPFVNNPPPFSFA--D-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAA 281 (380)
T ss_pred eeecccCccccCCcc--C-CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHH
Confidence 5 21 01 11111 1 46777654 877766789999999887766542111100 012223 33455666677
Q ss_pred HHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC
Q 011959 361 LKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (474)
Q Consensus 361 l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (474)
|+.+.. .+..++..++.+++.++|++. ++..-..+..+. +.|.. ++ ..+ .+
T Consensus 282 L~~lg~~G~~~~~~~~~~la~~l~~~L~~~----g~~~~~~p~~~~--v~f~~-----------~~----~~~-----~~ 335 (380)
T PRK02769 282 IRSLGSKGLRQRVQHCLDMAQYAVDRLQAN----GIPAWRNPNSIT--VVFPC-----------PS----ERI-----WK 335 (380)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHhC----CCEEEcCCCceE--EEEcC-----------CC----HHH-----Hh
Confidence 777655 455667777778888877653 322222222222 22221 21 111 14
Q ss_pred CeEecccCC-cceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 438 GVYFAPSQF-EAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 438 Gv~v~~~~~-~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
|..+.+... -++.+...+|+|.+|++++-|.+.+.
T Consensus 336 ~w~l~~~~~~~hi~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 336 KWHLATSGNQAHIITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred CeeEcccCCEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 555554432 12344566799999999999987654
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-14 Score=145.17 Aligned_cols=250 Identities=17% Similarity=0.159 Sum_probs=155.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
..+...+|.++++++. +.+..++++||+.|+..++.. ....+++||+....|++.......... ..|
T Consensus 61 ~~p~~~~le~~lA~l~-g~~~av~~~sG~~Ai~~al~a--l~~~Gd~Vl~~~~~y~~t~~~~~~~~~----------~~G 127 (389)
T PRK05968 61 DNPTVRAFEEMLAKLE-GAEDARGFASGMAAISSTVLS--FVEPGDRIVAVRHVYPDAFRLFETILK----------RMG 127 (389)
T ss_pred CChhHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHH--HhCCCCEEEEeCCCchHHHHHHHHHHH----------HcC
Confidence 4555778888888888 445667779999999998873 234567888888887764321111100 001
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (474)
.++..++.+|++++++.+. ++++|++|.+.|..+.+.+ +++|.++|++||+++|+|++|.......
T Consensus 128 ------~~v~~vd~~d~~~l~~~i~----~tklV~ie~pt~~~~~~~d----l~~i~~la~~~gi~vivD~a~a~~~~~~ 193 (389)
T PRK05968 128 ------VEVDYVDGRDEEAVAKALP----GAKLLYLESPTSWVFELQD----VAALAALAKRHGVVTMIDNSWASPVFQR 193 (389)
T ss_pred ------ceEEEeCCCCHHHHHHhcc----cCCEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCcchhccC
Confidence 1244445558899988873 4678888876666555544 9999999999999999999995321111
Q ss_pred CccccccCCCCcee--ehhhhcCC-C-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 297 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 297 ~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
. . .+|. |++ +++|.+++ | ++.|++++++++++.++.......+ ...++..++.++..|+.+ +...++
T Consensus 194 p--~-~~g~--Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g--~~~~~~~A~~~l~~L~tl--~~r~~~ 264 (389)
T PRK05968 194 P--I-TLGV--DLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLG--AKLSPFEAWLLLRGLRTL--PLRMKA 264 (389)
T ss_pred c--h-hcCC--cEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCC--CCCChHHHHHHHcccCcH--HHHHHH
Confidence 1 1 1343 554 78999985 4 5788888899988776531111111 345676766666655533 334455
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeeEE-------------eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCe
Q 011959 373 LNKITGELTQGIIDAGKKAGHAICG-------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV 439 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~v-------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 439 (474)
..++.+++.+.|++ ++.+..+ .+.|.++.|++.+ .....+|.+.|...++
T Consensus 265 ~~~~a~~la~~L~~----~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~-------------~~~~~~f~~~L~~~~~ 327 (389)
T PRK05968 265 HEASALEIARRLKA----HPVVERVCHPALANHPPAGLSGTSGLFSFIFRE-------------GIDVRAFADALKLFRL 327 (389)
T ss_pred HHHHHHHHHHHHHh----CCCccEEECCCCCCChHHhCCCCceEEEEEECC-------------HHHHHHHHHhCCccEE
Confidence 55556666666654 3322222 1456788888742 1223567777655443
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=144.99 Aligned_cols=216 Identities=16% Similarity=0.164 Sum_probs=144.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
+.+...+|.+.++++.+ .+..++++||+.|+..+++. ....+++||+..+.| +.+.......-
T Consensus 63 ~~p~~~~le~~lA~l~g-~~~~i~~~sG~~Al~~~l~~--ll~~Gd~Viv~~~~y-~~t~~~~~~~~------------- 125 (403)
T PRK07503 63 SNPTLALLEQRMASLEG-GEAAVALASGMGAITATLWT--LLRPGDEVIVDQTLY-GCTFAFLHHGL------------- 125 (403)
T ss_pred CCchHHHHHHHHHHHhC-CCcEEEEcCHHHHHHHHHHH--HcCCCCEEEEccCcc-chHHHHHHHHH-------------
Confidence 45556788888888774 45678888999999999974 244567787776655 43332221100
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (474)
...+.++..++.+|++++++.++. ++++|++|.++|++|.+.+ +++|.++|++||++||+|++|.....+.
T Consensus 126 --~~~G~~v~~vd~~d~~~l~~~i~~---~tklV~le~p~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~~~~~~ 196 (403)
T PRK07503 126 --GEFGVTVRHVDLTDPAALKAAISD---KTRMVYFETPANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCTPYLQR 196 (403)
T ss_pred --hhCCEEEEEeCCCCHHHHHHhcCc---cCcEEEEeCCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 001123455566689999998863 5788999988888999988 9999999999999999999995321111
Q ss_pred CccccccCCCCcee--ehhhhcCC-C-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 297 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 297 ~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
. .+...|++ +++|.+++ | .+.|++++++++++.++... .........+++.++.++..|+.+ +...++
T Consensus 197 ~-----l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~-~~~~~g~~~s~~~a~l~l~~L~tl--~~r~~~ 268 (403)
T PRK07503 197 P-----LELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEG-LKDMTGAVMSPFDAFLLMRGLKTL--ALRMDR 268 (403)
T ss_pred c-----hhhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhh-HHhCcCCCCCHHHHHHHHcCcchH--HHHHHH
Confidence 1 12334655 68999995 5 78898898899888775210 011123566788777776666544 234445
Q ss_pred HHHHHHHHHHHHHH
Q 011959 373 LNKITGELTQGIID 386 (474)
Q Consensus 373 ~~~~~~~l~~~L~~ 386 (474)
..++...+.+.|++
T Consensus 269 ~~~na~~~a~~L~~ 282 (403)
T PRK07503 269 HCASAQAVAEWLAR 282 (403)
T ss_pred HHHHHHHHHHHHHh
Confidence 55666666666654
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-14 Score=144.88 Aligned_cols=163 Identities=18% Similarity=0.153 Sum_probs=118.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
+.++...+|.++++++. +.+.+++++||++|+..+++.. ...+++||+.++.|++.......... ..
T Consensus 54 ~~~p~~~~le~~lA~l~-g~~~~v~~~sG~~Ai~~al~~l--~~~Gd~Vl~~~~~y~~t~~~~~~~~~----------~~ 120 (418)
T TIGR01326 54 LMNPTTDVLEQRIAALE-GGVAALAVASGQAAITYAILNL--AQAGDNIVSSSYLYGGTYNLFKHTLK----------RL 120 (418)
T ss_pred CCChhHHHHHHHHHHHh-CCCeEEEEccHHHHHHHHHHHH--hCCCCEEEEECCCcHHHHHHHHHHHH----------Hc
Confidence 35566788999999888 4578899999999999999842 34567888888888764322211100 00
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
| .++..++.+|++++++.+++ ++++|++|.++|++|.+.+ +++|+++|++||+++|+||+|...
T Consensus 121 G------~~v~~v~~~d~~~l~~~l~~---~t~~V~le~p~NPtg~v~d----l~~I~~la~~~~i~livD~t~~~~--- 184 (418)
T TIGR01326 121 G------IEVRFVDPDDPEEFEKAIDE---NTKAVFAETIGNPAINVPD----IEAIAEVAHAHGVPLIVDNTFATP--- 184 (418)
T ss_pred C------cEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCchh---
Confidence 1 13445556689999998863 5788999998888999888 999999999999999999999521
Q ss_pred CCccccccCCCCcee--ehhhhcCC-CcceEEEEecH
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGRR 329 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G~~iG~~~~~~ 329 (474)
.....+...+|++ +++|.+++ |+++|++++++
T Consensus 185 --~~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 185 --YLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred --hcCCchhcCCeEEEECccccccCCccceEEEEEec
Confidence 1111122345766 79999996 89999997754
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-14 Score=142.41 Aligned_cols=318 Identities=15% Similarity=0.079 Sum_probs=176.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-------CC----HHHHHHHHHHHhhCC-CCCeEEEe---CCHHHHHHHHHHHhHhhcC
Q 011959 116 ADDQVLAALGETMKKGTSFGA-------PC----LLENVLAEMVISAVP-SIEMVRFV---NSGTEACMGVLRLARAFTG 180 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~-------~~----~~~~~la~~l~~~~~-~~~~v~~~---~sGseA~~~al~~ar~~~~ 180 (474)
.+|.+++++...+.+....+. -. .++....+.+++.+. ..+.+.++ +||++||..+++.. +..
T Consensus 46 ~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al--~~~ 123 (452)
T PTZ00094 46 TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTAL--LQP 123 (452)
T ss_pred CCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHh--cCC
Confidence 468888888887754210011 11 122123456667775 34556566 79999999988842 233
Q ss_pred CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-----CHHHHHHHHhcCCCCeEEEEEccc
Q 011959 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
++.||+ +..-||............. ....+ ...++..++++ |+++|+++++++ +.+.|++.
T Consensus 124 gd~Ii~-~~~ehg~~l~~~~~l~~~~-----~~~~~----~~~~~~~~~~~~~g~id~~~L~~~l~~~--~~~lvi~~-- 189 (452)
T PTZ00094 124 HDRIMG-LDLPSGGHLTHGFYTAKKK-----VSATS----IYFESLPYQVNEKGLIDYDKLEELAKAF--RPKLIIAG-- 189 (452)
T ss_pred CCEEEe-cccccCCcccccccccccc-----cccce----eeeeeeecccCCCCCcCHHHHHHHHHHh--CCCEEEEe--
Confidence 455555 4444654332211000000 00000 00012222332 899999999753 23445542
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCcccCCCccccccCCCCceee--hhhhcCCCcceEEEEecHHHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGFRLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIM 332 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~~i~ 332 (474)
.++.|.+.| +++|.++|+++|++|++|++| .|...+........ ..|+++ ..|+|.|.. .|++++++++.
T Consensus 190 ~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~--~~D~l~~S~hK~l~GP~-Gg~l~~~~~~~ 262 (452)
T PTZ00094 190 ASAYPRDID----YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFP--YADVVTTTTHKSLRGPR-SGLIFYRKKVK 262 (452)
T ss_pred CCCCCCccC----HHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCC--CCcEEEcCCccCCCCCC-ceEEEEecccc
Confidence 345778888 999999999999999999999 44411111111111 357775 569997533 46667676554
Q ss_pred HhhcCC--CCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee-eceeEEE
Q 011959 333 EMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGF 406 (474)
Q Consensus 333 ~~~~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i 406 (474)
+.+... ...+....-+.++..+++..++++.+.. +++.+++.++.++|.+.|.+. ++.....+ ......+
T Consensus 263 ~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~----g~~v~~~~~~~~~~~v 338 (452)
T PTZ00094 263 PDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR----GYDLVTGGTDNHLVLV 338 (452)
T ss_pred hHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC----CcEEecCCCCCceEee
Confidence 433210 0111111114566777788888988854 356778888888888888663 22111111 0112222
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc---------CCcceEEe------cCCcHHHHHHHHHHHHHHH
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS---------QFEAGFTS------LAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---------~~~~~~~~------~~~t~e~i~~~l~~l~~~~ 471 (474)
.+.... .....+...|.++||++... ..+.+|++ ..++++|++++++.|.+++
T Consensus 339 ~~~~~~------------~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~ 406 (452)
T PTZ00094 339 DLRPFG------------ITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAV 406 (452)
T ss_pred cCCcCC------------CCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 332111 11245667776789999522 12346764 2346999999999999987
Q ss_pred h
Q 011959 472 R 472 (474)
Q Consensus 472 ~ 472 (474)
+
T Consensus 407 ~ 407 (452)
T PTZ00094 407 K 407 (452)
T ss_pred H
Confidence 5
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-14 Score=142.33 Aligned_cols=212 Identities=16% Similarity=0.114 Sum_probs=137.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++...+|.+.++++. +.+.+++++||+.|+..++.. .+..++.|++..+.|++........... +
T Consensus 51 ~np~~~~lE~~lA~l~-g~~~~l~~~sG~~Ai~~~l~~--ll~~GD~Vlv~~~~y~~~~~~~~~~~~~-----------g 116 (385)
T PRK08574 51 ENPTLRPLEEALAKLE-GGVDALAFNSGMAAISTLFFS--LLKAGDRVVLPMEAYGTTLRLLKSLEKF-----------G 116 (385)
T ss_pred CCccHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHH--HhCCCCEEEEcCCCchhHHHHHHHhhcc-----------C
Confidence 3445567778888777 456788899999999999874 2445678888887776643322111100 1
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCcccC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGFRLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~r~g 295 (474)
+ ++..+. .|++++++.++.+ ++++|++|.++|++|.+.+ +++|.++|++||++||+||+| +++..
T Consensus 117 ~------~v~~~~-~d~~~l~~~i~~~--~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD~t~a~~~~~- 182 (385)
T PRK08574 117 V------KVVLAY-PSTEDIIEAIKEG--RTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVDNTFATPLLY- 182 (385)
T ss_pred c------EEEEEC-CCHHHHHHhcCcc--CceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCccccC-
Confidence 1 122222 2688899888642 5789999999999999998 999999999999999999999 44311
Q ss_pred CCccccccCCCCcee--ehhhhcCC-Ccce-EEEE-ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYG-GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G~~i-G~~~-~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
.. . ..|. |++ +++|.++| |-.+ |+++ .++++.+.++... .......+|+.++.++..|+.+ +...
T Consensus 183 ~~--l-~~Ga--Divv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~---~~~g~~~~p~~a~l~l~~l~tL--~~R~ 252 (385)
T PRK08574 183 RP--L-RHGA--DFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWR---RRLGTIMQPFEAYLVLRGLKTL--EVRF 252 (385)
T ss_pred Ch--h-hhCC--cEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHH---HhcCCCCCHHHHHHHHcccCcH--HHHH
Confidence 11 1 1343 554 78999985 5444 5454 4677777665211 1123345677666666666543 3345
Q ss_pred HHHHHHHHHHHHHHHH
Q 011959 371 EYLNKITGELTQGIID 386 (474)
Q Consensus 371 ~~~~~~~~~l~~~L~~ 386 (474)
++..++..++.+.|++
T Consensus 253 ~~~~~na~~la~~L~~ 268 (385)
T PRK08574 253 ERQCRNAMAIAEFLSE 268 (385)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5556666666666654
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-14 Score=140.87 Aligned_cols=309 Identities=16% Similarity=0.107 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchh
Q 011959 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197 (474)
Q Consensus 118 p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~ 197 (474)
++-++++.+.+..+..+ ..+...+|.+.+++++ +.+.+++++||++|+..+++.. ....+++||+..++|.+.. .
T Consensus 14 ~~e~~~~~~~l~~~~~~--~g~~~~~le~~la~~~-g~~~~v~~~sgt~al~lal~al-~~~~Gd~Viv~~~~~~~~~-~ 88 (379)
T PRK11658 14 DEELAAVKEVLRSGWIT--TGPKNQALEQAFCQLT-GNQHAIAVSSATAGMHITLMAL-GIGPGDEVITPSLTWVSTL-N 88 (379)
T ss_pred HHHHHHHHHHHHcCCcc--CCHhHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHHc-CCCCCCEEEECCCcHHHHH-H
Confidence 56678888888765432 3344677777777777 5568899999999999999842 1345678888888887653 3
Q ss_pred HHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-CCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHH
Q 011959 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
.+...|..+..++... .+ + -|++++++.+.. ++++|+ |++ ..|...+ +++|.++|
T Consensus 89 ~~~~~G~~~v~vd~~~-~~-------------~~~d~~~l~~~i~~---~tkav~--~~~-~~G~~~d----~~~i~~~a 144 (379)
T PRK11658 89 MIVLLGATPVMVDVDR-DT-------------LMVTPEAIEAAITP---RTKAII--PVH-YAGAPAD----LDAIRAIG 144 (379)
T ss_pred HHHHcCCEEEEEecCC-Cc-------------CCcCHHHHHHhccc---CCeEEE--EeC-CCCCcCC----HHHHHHHH
Confidence 3333443322211110 00 1 178999998863 466666 222 3677666 89999999
Q ss_pred HHhCCEEEEecccc-Cc-ccCCCccccccCCCCceeehh--hhcCCCcceEEEEec-HHHHHhhcCC---CCc-------
Q 011959 277 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGR-RDIMEMVAPA---GPM------- 341 (474)
Q Consensus 277 ~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~t~s--K~l~~G~~iG~~~~~-~~i~~~~~~~---~~~------- 341 (474)
++||++||+|++|+ |. ..|.. ...+|. ++.+|+ |.+++| +.|+++.+ +++.+.++.. +..
T Consensus 145 ~~~gi~vi~D~a~a~g~~~~~~~--~g~~g~--~~~Sf~~~K~l~~g-~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~ 219 (379)
T PRK11658 145 ERYGIPVIEDAAHAVGTYYKGRH--IGARGT--AIFSFHAIKNITCA-EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQ 219 (379)
T ss_pred HHcCCeEEEECCCccCCeECCee--cCCCCC--EEEeCCCCCcCccc-CceEEEECCHHHHHHHHHHHHcCCCcchhhhh
Confidence 99999999999995 54 33321 112333 566766 666543 67777764 6776655421 100
Q ss_pred -----------ccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh-cCCeeE-EeeeceeEEEEE
Q 011959 342 -----------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGHAIC-GGYISGMFGFFF 408 (474)
Q Consensus 342 -----------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~-v~~~g~~~~i~~ 408 (474)
..+..+..+.+.++.++..|+.+ ++..++.+++.+++++.|.++... ...+.. ......++.+.+
T Consensus 220 ~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l--~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
T PRK11658 220 TQGRAPQAEVLTPGYKYNLADINAAIALVQLAKL--EALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRV 297 (379)
T ss_pred cccCCCcceeeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEE
Confidence 00112334445555555555543 445666666777777777653110 001000 001112223333
Q ss_pred ecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----------------C--------cceEEe--cCCcHHHHH
Q 011959 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------F--------EAGFTS--LAHSSDDIQ 461 (474)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------~--------~~~~~~--~~~t~e~i~ 461 (474)
.... .....+++.+.|.++||.+.... . ..+.++ ...|+++++
T Consensus 298 ~~~~----------~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~ 367 (379)
T PRK11658 298 DEER----------CGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVD 367 (379)
T ss_pred CCcc----------ccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHH
Confidence 2110 01123578888999998654210 0 012333 456999999
Q ss_pred HHHHHHHHHHh
Q 011959 462 HTITAAEKVLR 472 (474)
Q Consensus 462 ~~l~~l~~~~~ 472 (474)
++++.|++++.
T Consensus 368 ~i~~~i~~~~~ 378 (379)
T PRK11658 368 RVITALQQIAG 378 (379)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-14 Score=142.75 Aligned_cols=237 Identities=16% Similarity=0.130 Sum_probs=149.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
+++...+|.++++++. +.+..+.++||++|+..+++.. ...+++||+.++.|.+.......... ..+
T Consensus 59 ~~p~~~~Le~~lA~~~-g~~~~i~~~sG~~Ai~~~l~al--l~~Gd~Vl~~~~~y~~t~~~~~~~~~----------~~g 125 (388)
T PRK07811 59 GNPTRTALEEQLAALE-GGAYGRAFSSGMAATDCLLRAV--LRPGDHIVIPNDAYGGTFRLIDKVFT----------RWG 125 (388)
T ss_pred CCccHHHHHHHHHHHh-CCCceEEeCCHHHHHHHHHHHH--hCCCCEEEEcCCCchHHHHHHHHhCc----------CCC
Confidence 4455677888888877 4455677788999999999842 34567888888888653322211110 011
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (474)
.++..++..|++++++.++. ++++|++|.++|++|.+.+ +++|.++|++||++||+||+|.......
T Consensus 126 ------i~~~~~d~~d~e~l~~~i~~---~tklV~ie~p~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a~~~~~~ 192 (388)
T PRK07811 126 ------VEYTPVDLSDLDAVRAAITP---RTKLIWVETPTNPLLSITD----IAALAELAHDAGAKVVVDNTFASPYLQQ 192 (388)
T ss_pred ------eEEEEeCCCCHHHHHHhcCc---CCeEEEEECCCCCcceecC----HHHHHHHHHHcCCEEEEECCCCccccCC
Confidence 13444555689999988863 5789999988888888877 9999999999999999999995321111
Q ss_pred CccccccCCCCcee--ehhhhcCC-C-cceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 297 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 297 ~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
. .+...|++ +++|.++| | .+.|+++++ +++.+.+.. .........+|..+..++..|+.+ +...+
T Consensus 193 p-----~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~---~~~~~g~~~s~~~a~l~~~~L~tl--~~R~~ 262 (388)
T PRK07811 193 P-----LALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAF---LQNGAGAVPGPFDAYLTLRGLKTL--AVRMD 262 (388)
T ss_pred c-----hhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHH---HHHhcCCCCCHHHHHHHHhccCcH--HHHHH
Confidence 1 12234655 68999985 3 567888764 666665541 111112234565555444444432 34455
Q ss_pred HHHHHHHHHHHHHHHHhh----hcC-Ce---------eEEeeeceeEEEEEe
Q 011959 372 YLNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (474)
+..++...+.+.|++... .+| +. ....+.|.|+.|++.
T Consensus 263 ~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 314 (388)
T PRK07811 263 RHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLA 314 (388)
T ss_pred HHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeC
Confidence 566677777777764310 011 00 012356889999985
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-14 Score=143.82 Aligned_cols=218 Identities=21% Similarity=0.235 Sum_probs=140.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++...+|.+.|+++.+ .+..++++||++|+..+++.. ...+++||+..+.|++... .+... . + ..+
T Consensus 56 ~~pt~~~Le~~lA~l~g-~~~~l~~ssG~~Ai~~al~al--~~~Gd~Vl~~~~~Y~~t~~-~~~~~-l-------~-~~g 122 (425)
T PRK06084 56 MNPTNDVLEQRVAALEG-GVGALAVASGMAAITYAIQTI--AEAGDNIVSVAKLYGGTYN-LLAHT-L-------P-RIG 122 (425)
T ss_pred CCchHHHHHHHHHHHhC-CCceeEehhHHHHHHHHHHHH--hCCCCEEEEeCCCcchHHH-HHHHh-c-------c-cce
Confidence 34555788888888874 567788999999999999842 3346788888888887432 22210 0 0 001
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (474)
..+..++.+|++++++.+++ ++++|++|+++|++|.+.+ +++|.++|++||++||+||+|.....
T Consensus 123 ------i~v~~~d~~d~e~le~ai~~---~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a~~~~-- 187 (425)
T PRK06084 123 ------IETRFAAHDDIAALEALIDE---RTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVDNTVATPVL-- 187 (425)
T ss_pred ------eEEEEECCCCHHHHHHHhcc---CCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccccc--
Confidence 12444566689999999873 5789999999999999998 99999999999999999999952111
Q ss_pred CccccccCCCCcee--ehhhhcCC-CcceEEEEec-HHH--HHh------hcCCCC-----------------------c
Q 011959 297 GGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGR-RDI--MEM------VAPAGP-----------------------M 341 (474)
Q Consensus 297 ~~~~~~~g~~pdi~--t~sK~l~~-G~~iG~~~~~-~~i--~~~------~~~~~~-----------------------~ 341 (474)
........|++ +++|.++| |.++|++++. +.+ .+. +....+ .
T Consensus 188 ---~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 264 (425)
T PRK06084 188 ---CRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVP 264 (425)
T ss_pred ---CChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHH
Confidence 11122345655 78999995 6888887653 321 010 000000 0
Q ss_pred ccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 011959 342 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 342 ~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~ 387 (474)
........+|..++.++..|+.+ +...++..++...+.+.|++.
T Consensus 265 ~~~~g~~l~~~~a~l~lrgl~tl--~~R~~~~~~na~~la~~L~~~ 308 (425)
T PRK06084 265 LRNMGAALSPFNAFLILQGLETL--ALRMERHTENALKVARYLQQH 308 (425)
T ss_pred HHhcCCCCCHHHHHHHHcCcCcH--HHHHHHHHHHHHHHHHHHHhC
Confidence 01112345666666555555433 455666777777777777764
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-14 Score=141.61 Aligned_cols=237 Identities=15% Similarity=0.129 Sum_probs=150.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
+.++...+|.++++++. +.+.+++++||++|+..++... ...++.|++.++.|.+........... .
T Consensus 50 ~~npt~~~Le~~lA~le-g~e~ivvt~gg~~Ai~~~l~al--l~~Gd~Il~~~~~y~~~~~~~~~~~~~----------~ 116 (388)
T PRK08861 50 SGNPNRGLLEQTLSELE-SGKGAVVTNCGTSALNLWVSAL--LGPDDLIVAPHDCYGGTYRLFNTRANK----------G 116 (388)
T ss_pred CCCchHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHHH--cCCCCEEEEcCCchHHHHHHHHHHHhc----------C
Confidence 34556678888888887 5689999999999999999842 345677888788876533222111100 0
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cccc
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRL 294 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~ 294 (474)
++ ++..++..|++++++.++. ++++|++|.++|++|.+.+ +++|.++|+++|+++|+||+|. ++..
T Consensus 117 gi------~v~~vd~~d~e~l~~~i~~---~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~~~~~ 183 (388)
T PRK08861 117 DF------KVQFVDQSDAAALDAALAK---KPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVAVDNTFLTPVLQ 183 (388)
T ss_pred Ce------EEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCccccccC
Confidence 11 2333444588999888863 5789999988889999999 8899999999999999999995 3211
Q ss_pred CCCccccccCCCCcee--ehhhhcCC--CcceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCH
Q 011959 295 AYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (474)
Q Consensus 295 g~~~~~~~~g~~pdi~--t~sK~l~~--G~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (474)
.. .....|++ +++|.++| +...|+++++ +++.+.++. .........+|..+...+..|+.+ .-.
T Consensus 184 -~p-----l~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~---~~~~~G~~~~p~~a~l~~rgl~Tl--~lR 252 (388)
T PRK08861 184 -KP-----LELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAW---WGNCIGATGTPFDSYMTLRGIRTL--GAR 252 (388)
T ss_pred -CC-----cccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHH---HHhccCCCCChHHHHHHHhcCCCH--HHH
Confidence 11 12234665 68899985 3667888774 556555542 111112345677666555444332 233
Q ss_pred HHHHHHHHHHHHHHHHHHhh----hcC-Ce---------eEEeeeceeEEEEEe
Q 011959 370 YEYLNKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (474)
.++..++...+.+.|++.-. .|| +. ....+.|.++.|++.
T Consensus 253 ~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~ 306 (388)
T PRK08861 253 MRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFA 306 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeC
Confidence 45556666666666654310 011 00 012467888899885
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=143.38 Aligned_cols=234 Identities=13% Similarity=0.127 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCC
Q 011959 139 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP 218 (474)
Q Consensus 139 ~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~ 218 (474)
+...+|.+.++++. +.+.+++++||++|+..++.. .+..+++||+.++.|.+......... ...|
T Consensus 61 pt~~~Le~~iA~le-~~~~~~~~~sG~~Ai~~~l~a--ll~~GD~Vvv~~~~Y~~t~~l~~~~l----------~~~G-- 125 (394)
T PRK09028 61 PTHFAFQAAIVELE-GGAGTALYPSGAAAISNALLS--FLKAGDHLLMVDSCYEPTRDLCDKIL----------KGFG-- 125 (394)
T ss_pred chHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHH--HhCCCCEEEEECCCcHHHHHHHHHhh----------hhcc--
Confidence 34567778888776 446789999999999999874 24567889999888866432211100 0011
Q ss_pred CCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccCCC
Q 011959 219 KGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYG 297 (474)
Q Consensus 219 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~ 297 (474)
.++..++.++.+.+++.+. +++++|++|.+.|++|.+.+ +++|.++|++||+++|+|++|. ++
T Consensus 126 ----i~v~~v~~~~~e~l~~~l~---~~TklV~lespsNPtg~v~d----l~~I~~la~~~g~~lvvD~t~a~p~----- 189 (394)
T PRK09028 126 ----IETTYYDPMIGEGIRELIR---PNTKVLFLESPGSITMEVQD----VPTLSRIAHEHDIVVMLDNTWASPI----- 189 (394)
T ss_pred ----eEEEEECCCCHHHHHHhcC---cCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCccccc-----
Confidence 1233444456788888875 36889999999999988877 9999999999999999999994 32
Q ss_pred ccccccCCCCcee--ehhhhcCC--CcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHH
Q 011959 298 GAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 373 (474)
Q Consensus 298 ~~~~~~g~~pdi~--t~sK~l~~--G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 373 (474)
.+.-+....|++ +.+|.++| ..-.|+++.++++.+.+.... ...+ ...+|..+...+..|+.+ .-..++.
T Consensus 190 -~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~-~~~G--~~~~p~~a~l~~rgl~TL--~lR~~~~ 263 (394)
T PRK09028 190 -NSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHS-YLMG--QCTSPDDVYLAMRGLRTL--GVRLAQH 263 (394)
T ss_pred -cCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHH-HhcC--CCCCHHHHHHHHcccCcH--HHHHHHH
Confidence 111122334655 68999985 366787777887766554210 1111 245666666555544432 3345556
Q ss_pred HHHHHHHHHHHHHHhh----hcC-Ce---------eEEeeeceeEEEEEe
Q 011959 374 NKITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (474)
Q Consensus 374 ~~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (474)
.++...+.+.|++.-. .|| +. ....+.|.|+.|++.
T Consensus 264 ~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~ 313 (394)
T PRK09028 264 EKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLK 313 (394)
T ss_pred HHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEEC
Confidence 6666666666664310 011 00 012356889999985
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-14 Score=139.83 Aligned_cols=229 Identities=15% Similarity=0.132 Sum_probs=151.2
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++...+|.++++++. +.+.++.++||++|+..++. .+..+++||+....|.+........... .+
T Consensus 52 ~~p~~~~le~~lA~le-g~~~~v~~~sG~aAi~~~l~---~l~~GD~VI~~~~~yg~~~~~~~~~~~~----------~~ 117 (364)
T PRK07269 52 KNPTRAKLEETLAAIE-SADYALATSSGMSAIVLAFS---VFPVGSKVVAVRDLYGGSFRWFNQQEKE----------GR 117 (364)
T ss_pred CCccHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHH---HhCCCCEEEEecCCcCchHHHHHHHHhc----------Cc
Confidence 4455677888888777 67899999999999999985 3456788998888886643221111000 01
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g 295 (474)
+ .+.+. .|++++++.++. ++++|++|.+.|++|.+.+ +++|.++|+++|+++|+||++. ++.
T Consensus 118 ~-------~~~~~-~d~~~l~~~i~~---~TklV~lesP~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~~~~-- 180 (364)
T PRK07269 118 F-------HFTYA-NTEEELIAAIEE---DTDIVYIETPTNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYSPIY-- 180 (364)
T ss_pred E-------EEEec-CCHHHHHHhcCc---CceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccccc--
Confidence 0 01111 278999988863 5789999998888898887 9999999999999999999973 221
Q ss_pred CCccccccCCCCcee--ehhhhcCC-C-cceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
....+...|++ +++|.++| | .-.|++++ ++++.+.++. .........+|+.++.++..|+.+ +..+
T Consensus 181 ----~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~---~~~~~G~~~s~~~a~l~~~~L~tL--~~r~ 251 (364)
T PRK07269 181 ----QRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFY---NLNTTGAVLSPFDSYLLMRGLKTL--SLRM 251 (364)
T ss_pred ----CCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHH---HHHHhCCCCCHHHHHHHHcCCCcH--HHHH
Confidence 12233445766 57899985 3 33566666 4667666652 111112456788877777666543 3445
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCe--eEEeeeceeEEEEEe
Q 011959 371 EYLNKITGELTQGIIDAGKKAGHA--ICGGYISGMFGFFFT 409 (474)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~--~~v~~~g~~~~i~~~ 409 (474)
++.+++...+.+.|+ .++.+ +..++.|.++.|++.
T Consensus 252 ~~~~~na~~~a~~L~----~~p~v~~v~ypg~gg~~sf~~~ 288 (364)
T PRK07269 252 ERSTANAQEVVAFLK----KSPAVKEVLYTGKGGMISFKVA 288 (364)
T ss_pred HHHHHHHHHHHHHHH----hCCCccEEeCCCcCcEEEEEEC
Confidence 555666666666554 34422 233678999999884
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-13 Score=130.69 Aligned_cols=308 Identities=20% Similarity=0.197 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchh
Q 011959 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197 (474)
Q Consensus 118 p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~ 197 (474)
.+.++++.+.+..+.... -+...++.+.+++++ +...++.++|||.|++.|++.. ...+++.||+..-+|-.....
T Consensus 15 ~~e~~~v~~vl~sg~i~~--G~~v~~FE~~~ae~~-G~k~ava~~sgT~AL~laL~al-~ig~GDeVI~ps~TfvATan~ 90 (374)
T COG0399 15 EEELAAVQEVLKSGWLTG--GPFVRRFEQAFAEYL-GVKYAVAVSSGTAALHLALLAL-AIGPGDEVIVPSFTFVATANA 90 (374)
T ss_pred hHHHHHHHHHHHcCCeec--ChHHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHhc-CCCCCCEEEecCCchHHHHHH
Confidence 567778888887754222 222334444444444 8899999999999999999943 356678888877677664333
Q ss_pred HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Q 011959 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (474)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (474)
.+..+..++...-.+....+ |++.+|+.|+. ++++||.-...|. ... ++.|.+||+
T Consensus 91 i~~~Ga~PVFvDid~~T~ni--------------d~~~ie~aIt~---~tKAIipVhl~G~---~~d----m~~i~~la~ 146 (374)
T COG0399 91 VLLVGAKPVFVDIDPDTLNI--------------DPDLIEAAITP---RTKAIIPVHLAGQ---PCD----MDAIMALAK 146 (374)
T ss_pred HHHcCCeEEEEecCCcccCC--------------CHHHHHHHccc---CCeEEEEehhccC---CCC----HHHHHHHHH
Confidence 33333332222111221221 89999999984 4888888776654 344 999999999
Q ss_pred HhCCEEEEecccc-Cc-ccCCCccccccCCCCceeehh----hhcCCCcceEEEEec-HHHHHhhcC---CCCc------
Q 011959 278 ENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVAP---AGPM------ 341 (474)
Q Consensus 278 ~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~t~s----K~l~~G~~iG~~~~~-~~i~~~~~~---~~~~------ 341 (474)
+||++||.|-+|+ |- +.|+ ..|-.-|+.+|| |-++.| -.|+++.+ +++.+.++. .+..
T Consensus 147 ~~~l~vIEDaAqa~Ga~y~gk-----~vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~ 220 (374)
T COG0399 147 RHGLPVIEDAAQAHGATYKGK-----KVGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFK 220 (374)
T ss_pred HcCCeEEEEcchhccCeecCc-----ccccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhCcCCCcccc
Confidence 9999999999994 33 3332 223333565554 999876 56777665 456555542 1111
Q ss_pred c----cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh-hcCCeeE-EeeeceeEEEEEecCCCcC
Q 011959 342 Y----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK-KAGHAIC-GGYISGMFGFFFTEGPVYN 415 (474)
Q Consensus 342 ~----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~-v~~~g~~~~i~~~~~~~~~ 415 (474)
+ .+..+..+-+.++.++..|+.+ +++.++-++..+++.+.|.++.. ..+.... ....-.++.+.+...
T Consensus 221 y~~~~~G~N~rm~~iqAAigl~QL~~l--~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~---- 294 (374)
T COG0399 221 YLHEELGYNYRLTEIQAAIGLAQLERL--DEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEE---- 294 (374)
T ss_pred ceeeecccccCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCC----
Confidence 1 1223344566666677777655 45666666777777777765421 1111110 111111222222211
Q ss_pred cccccccchHHHHHHHHHHHHCCe----EecccCC---------------c--------ceEEe--cCCcHHHHHHHHHH
Q 011959 416 FEDAKKSETTKFARFYRGMLEEGV----YFAPSQF---------------E--------AGFTS--LAHSSDDIQHTITA 466 (474)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~Gv----~v~~~~~---------------~--------~~~~~--~~~t~e~i~~~l~~ 466 (474)
....+.+.+.|.++|| +..|... + .++++ ...+++++++.+++
T Consensus 295 --------~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~ 366 (374)
T COG0399 295 --------GISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEA 366 (374)
T ss_pred --------CCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHH
Confidence 1123567888888854 3443210 0 12333 46799999999999
Q ss_pred HHHHHhh
Q 011959 467 AEKVLRQ 473 (474)
Q Consensus 467 l~~~~~~ 473 (474)
|++++..
T Consensus 367 l~~~~~~ 373 (374)
T COG0399 367 LKEVLGS 373 (374)
T ss_pred HHHHhcc
Confidence 9998864
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-13 Score=138.15 Aligned_cols=211 Identities=13% Similarity=0.137 Sum_probs=135.2
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCC
Q 011959 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~ 217 (474)
.+...+|++++++++ +.+.+++++||+.|+..++. .+..++.||+.+..|.+..........
T Consensus 46 ~p~~~~le~~la~l~-g~~~~l~~~sG~~al~~~l~---ll~~Gd~Vl~~~~~y~~~~~~~~~~~~-------------- 107 (378)
T TIGR01329 46 NPTRTALESLLAKLD-KADRAFAFSSGMAALDVITR---LLNNGDEIIAGDDLYGGTDRLLTQVVP-------------- 107 (378)
T ss_pred ChHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHH---HhCCCCEEEEcCCCchHHHHHHHHHHH--------------
Confidence 344677888888877 44788888999999887765 345667888877777653221111000
Q ss_pred CCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccCC
Q 011959 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAY 296 (474)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~ 296 (474)
..+.++..++..|++++++.++ +++++|++|.+.|++|.+.+ +++|.++|++||+++|+|++|. ++..
T Consensus 108 --~~G~~v~~vd~~d~~~le~~i~---~~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a~~~~~~~-- 176 (378)
T TIGR01329 108 --RSGVVVVHVDTTDLDKVKAALG---PKTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNTMMSPLLC-- 176 (378)
T ss_pred --HcCcEEEEeCCCCHHHHHHhcC---cCceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCcccccC--
Confidence 0011345555568999999886 36889999999899999998 9999999999999999999983 2211
Q ss_pred CccccccCCCCcee--ehhhhcCC--CcceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 297 GGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 297 ~~~~~~~g~~pdi~--t~sK~l~~--G~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
...+...|++ +++|.++| ++..|+++++ +++.+.+.. .........+|..+..++..++.+ +...+
T Consensus 177 ----~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~---~~~~~G~~~~~~~a~l~~~~l~tl--~~R~e 247 (378)
T TIGR01329 177 ----NPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYF---LQNSTGSGLAPFDCWLLLRGIKTL--AIRIE 247 (378)
T ss_pred ----ChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHH---HHHhcCCcCCHHHHHHHHccCCCH--HHHHH
Confidence 1112234655 68899985 3678888774 455555542 111112244566554433333222 34455
Q ss_pred HHHHHHHHHHHHHHH
Q 011959 372 YLNKITGELTQGIID 386 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~ 386 (474)
+..++...+.+.|++
T Consensus 248 ~~~~na~~la~~L~~ 262 (378)
T TIGR01329 248 KQQENARAIAMFLST 262 (378)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566666666666653
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-13 Score=136.18 Aligned_cols=305 Identities=16% Similarity=0.135 Sum_probs=176.6
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhH-------hhcCCcEEEEEeCCCCC
Q 011959 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR-------AFTGRERIIKFEGCYHG 193 (474)
Q Consensus 121 ~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar-------~~~~~~~ii~~~~~yhg 193 (474)
.+++.+.+..+....+ ....+|.+.+++++ +.+++++++||++|+..+++.+. ....+++||+..++|.+
T Consensus 47 ~~a~~~~~~~~~~~~G--~~~~~fe~~lA~~~-g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a 123 (438)
T PRK15407 47 LQNLVDASLDFWLTTG--RFNDAFEKKLAEFL-GVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPT 123 (438)
T ss_pred HHHHHHHHHhCcccCC--hhHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHH
Confidence 4445555555432222 23456666666666 56789999999999999998542 23456889988888876
Q ss_pred CchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHH
Q 011959 194 HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (474)
Q Consensus 194 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (474)
..... ...|..+...+... -.++ |++++++.+.. ++++|++++..++ ..+ +++|
T Consensus 124 ~~~~v-~~~G~~pv~vdvd~--------------~~~~id~~~le~~i~~---~tkaVi~~~~~G~---p~d----l~~I 178 (438)
T PRK15407 124 TVNPI-IQNGLVPVFVDVEL--------------PTYNIDASLLEAAVSP---KTKAIMIAHTLGN---PFD----LAAV 178 (438)
T ss_pred HHHHH-HHcCCEEEEEecCC--------------CcCCcCHHHHHHHcCc---CCeEEEEeCCCCC---hhh----HHHH
Confidence 54333 33333221111100 0122 78999988863 5788888876443 333 8999
Q ss_pred HHHHHHhCCEEEEecccc-Cc-ccCCCccccccCCCCceeehh----hhcCCCcceEEEEecH-HHHHhhc---CCCCc-
Q 011959 273 RRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGRR-DIMEMVA---PAGPM- 341 (474)
Q Consensus 273 ~~l~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~t~s----K~l~~G~~iG~~~~~~-~i~~~~~---~~~~~- 341 (474)
+++|++||++||+|++|+ |- ..|. ..|-.-|+.+|| |.+..|- .|+++.++ ++.+.++ ..+..
T Consensus 179 ~~la~~~gi~vIeDaa~a~G~~~~g~-----~~G~~gd~~~fSf~~~k~~~~ge-GG~l~t~d~~l~~~~~~~~~~G~~~ 252 (438)
T PRK15407 179 KAFCDKHNLWLIEDNCDALGSTYDGR-----MTGTFGDIATLSFYPAHHITMGE-GGAVFTNDPLLKKIIESFRDWGRDC 252 (438)
T ss_pred HHHHHHCCCEEEEECccchhhhcCCe-----eeeccCceEEEeCCCCCCccccC-ceEEEECCHHHHHHHHHHHHhCccc
Confidence 999999999999999995 32 2221 122223666554 7676442 57777654 4433322 11100
Q ss_pred --------------------------------ccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh
Q 011959 342 --------------------------------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK 389 (474)
Q Consensus 342 --------------------------------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 389 (474)
..+..+..+.+.++.++..|+.+ ++..++-+++.+++.+.|.++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l--~~~~~~R~~~a~~y~~~L~~~~~ 330 (438)
T PRK15407 253 WCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKL--PGFIEARKANFAYLKEGLASLED 330 (438)
T ss_pred ccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCC
Confidence 01233456778888888888766 45666677777777777764311
Q ss_pred hcCCee---EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--------------Cc-----
Q 011959 390 KAGHAI---CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------------FE----- 447 (474)
Q Consensus 390 ~~~~~~---~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------------~~----- 447 (474)
....+. .....-.++.+.+.... ....+++.+.|.++||-..... ..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~ 399 (438)
T PRK15407 331 FLILPEATPNSDPSWFGFPITVKEDA-----------GFTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGEL 399 (438)
T ss_pred ccccCcCCCCCeeEEEEEEEEECCcC-----------CCCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCC
Confidence 010111 11111122333332110 0113578899999998543210 00
Q ss_pred ---------ceEEe--cCCcHHHHHHHHHHHHHHHh
Q 011959 448 ---------AGFTS--LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 448 ---------~~~~~--~~~t~e~i~~~l~~l~~~~~ 472 (474)
.+.++ ...|+++++.++++|+++++
T Consensus 400 P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 400 TNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred hHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 02333 34689999999999998874
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-14 Score=141.95 Aligned_cols=238 Identities=17% Similarity=0.160 Sum_probs=150.6
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCC
Q 011959 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~ 217 (474)
++...+|.+.++++. +.+..++++||+.|+..+++.. ...+++||+....|++.........
T Consensus 62 ~p~~~~le~~lA~l~-g~~~al~~~SG~~Ai~~al~al--l~pGd~VIv~~~~y~~t~~~~~~~~--------------- 123 (427)
T PRK05994 62 NPTNAVLEERVAALE-GGTAALAVASGHAAQFLVFHTL--LQPGDEFIAARKLYGGSINQFGHAF--------------- 123 (427)
T ss_pred CccHHHHHHHHHHHh-CCCcEEEEcCHHHHHHHHHHHH--hCCCCEEEEecCcchhHHHHHHHHH---------------
Confidence 445678888888888 4556889999999999999852 4456889988888887432211100
Q ss_pred CCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccCC
Q 011959 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAY 296 (474)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~ 296 (474)
...+..+..++.+|++++++.++. ++++|++|.++|++|.+.+ +++|.++|++||+++|+|++|. ++
T Consensus 124 -~~~G~~v~~vd~~d~~~l~~ai~~---~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~a~a~~~---- 191 (427)
T PRK05994 124 -KSFGWQVRWADADDPASFERAITP---RTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLASPY---- 191 (427)
T ss_pred -HhcCcEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCccccc----
Confidence 001113445555689999998863 6789999999999999998 9999999999999999999995 22
Q ss_pred CccccccCCCCcee--ehhhhcCC-CcceEEEEec-HH-----------------------HHHhhc-------CCCCcc
Q 011959 297 GGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGR-RD-----------------------IMEMVA-------PAGPMY 342 (474)
Q Consensus 297 ~~~~~~~g~~pdi~--t~sK~l~~-G~~iG~~~~~-~~-----------------------i~~~~~-------~~~~~~ 342 (474)
....+...+|++ +++|.+++ |-.+|+++.. .. +.+.+. ......
T Consensus 192 --~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (427)
T PRK05994 192 --LIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGL 269 (427)
T ss_pred --cCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHH
Confidence 112233456766 58899985 4467766542 21 111100 000000
Q ss_pred cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh----hcCCe-e---------E-EeeeceeEEEE
Q 011959 343 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK----KAGHA-I---------C-GGYISGMFGFF 407 (474)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~~~-~---------~-v~~~g~~~~i~ 407 (474)
.......+|+.++.++..|+.+ +...++..++...+.+.|++.-. .||-. . . ..+.|.++.|+
T Consensus 270 ~~~G~~~~~~~A~l~~~~l~tL--~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~ 347 (427)
T PRK05994 270 RDLGPAISPFNAFLILTGIETL--PLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFG 347 (427)
T ss_pred HhcCCCCCHHHHHHHHcCcccH--HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEE
Confidence 0111235666666666555433 44566677777777777765321 11100 0 0 24568888988
Q ss_pred Ee
Q 011959 408 FT 409 (474)
Q Consensus 408 ~~ 409 (474)
+.
T Consensus 348 l~ 349 (427)
T PRK05994 348 LK 349 (427)
T ss_pred ec
Confidence 85
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-13 Score=136.70 Aligned_cols=324 Identities=12% Similarity=-0.000 Sum_probs=189.9
Q ss_pred CCHHHHHHHHHHHHhc--C--CCCCCCHHHHHHHHHHHhhCCCC---CeEEE--eCCHHHHHHHHHHHhHhhc-------
Q 011959 116 ADDQVLAALGETMKKG--T--SFGAPCLLENVLAEMVISAVPSI---EMVRF--VNSGTEACMGVLRLARAFT------- 179 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~--~--~~~~~~~~~~~la~~l~~~~~~~---~~v~~--~~sGseA~~~al~~ar~~~------- 179 (474)
.+|++.+++...+... . ..+...+.+++..+++++.++.. +++.+ |+||||||..|+..+|...
T Consensus 53 ~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~ 132 (431)
T TIGR01788 53 MEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAA 132 (431)
T ss_pred CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999998888642 1 12233478889999999988622 45665 7999999999998776321
Q ss_pred C---CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 180 G---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 180 ~---~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
+ ....|+....-|-....+....|..+..++... .+ ..+ |+++|++.|++ ++.+|++.-.+
T Consensus 133 g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~-~~---------~~v---d~~~L~~~i~~---~t~lV~~t~g~ 196 (431)
T TIGR01788 133 GKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDP-GR---------YVI---DPEQVVEAVDE---NTIGVVCILGT 196 (431)
T ss_pred CCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCC-Cc---------eee---CHHHHHHHHhh---CCeEEEEEeCC
Confidence 1 123455555556554444443343222211110 11 001 89999999974 56788888888
Q ss_pred CCCCcccCCHHHHHHHHHHHHHh------CCEEEEeccccCc-c---cCC-CccccccCCCCceeehh--hhcCCCcceE
Q 011959 257 GNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R---LAY-GGAQEYFGVTPDLTTLG--KIIGGGLPVG 323 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~-r---~g~-~~~~~~~g~~pdi~t~s--K~l~~G~~iG 323 (474)
+++|.+.| +++|.++|++| |+++++|-+|.|+ . .+. ...+. ....|.++++ |.+.+...+|
T Consensus 197 t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~--~~~~DSis~s~HK~~~~P~g~G 270 (431)
T TIGR01788 197 TYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR--LPRVKSINVSGHKYGLVYPGVG 270 (431)
T ss_pred CCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC--CCCceEEEECchhccCCCCCcE
Confidence 99999999 99999999999 9999999999875 2 121 11111 1134667654 7654445689
Q ss_pred EEEecHH--HHHhhcCCCCccc----ccCCCCChH--HHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 324 AYGGRRD--IMEMVAPAGPMYQ----AGTLSGNPL--AMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 324 ~~~~~~~--i~~~~~~~~~~~~----~~t~~~~~~--~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
+++.+++ +.+.+.....+.. ..+..++.. ........|..+.. .+..++..++.+++.++|++. +
T Consensus 271 ~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~----~ 346 (431)
T TIGR01788 271 WVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKL----G 346 (431)
T ss_pred EEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhC----C
Confidence 9877654 3233321100110 012222221 22223344444433 445566667777777777654 2
Q ss_pred -CeeEEe-eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----C---cceEE--ecCCcHHHHH
Q 011959 393 -HAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----F---EAGFT--SLAHSSDDIQ 461 (474)
Q Consensus 393 -~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~---~~~~~--~~~~t~e~i~ 461 (474)
+....+ ....++.|.+.... .......++.+.|.++|+.+.... . ..+|+ ...++++.++
T Consensus 347 ~~el~~~~~~~~iV~Fr~~~~~---------~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~ 417 (431)
T TIGR01788 347 PFEIISDGSGIPLVAFKLKDDA---------DPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAE 417 (431)
T ss_pred CEEEeeCCCCceEEEEEeCCCC---------CCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHH
Confidence 111111 23344444443211 001123568889999998642221 1 12333 2356899999
Q ss_pred HHHHHHHHHHhhC
Q 011959 462 HTITAAEKVLRQI 474 (474)
Q Consensus 462 ~~l~~l~~~~~~~ 474 (474)
++++.|++++.++
T Consensus 418 ~~~~~~~~~~~~~ 430 (431)
T TIGR01788 418 LLIEDIEAALAYL 430 (431)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=143.99 Aligned_cols=229 Identities=16% Similarity=0.071 Sum_probs=134.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 214 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 214 (474)
.+.....++.+.+++.++ .++++| ++|+++++..++.. ...++++|++..++ |......+...|..+..+.....
T Consensus 56 ~~~g~i~~~~~~~A~~~g-a~~~~~~~~Gst~a~~~~l~a--l~~~gd~Vlv~~~~-h~s~~~~~~~~g~~~~~v~~~~~ 131 (294)
T cd00615 56 DPTGPIKEAQELAARAFG-AKHTFFLVNGTSSSNKAVILA--VCGPGDKILIDRNC-HKSVINGLVLSGAVPVYLKPERN 131 (294)
T ss_pred CCChHHHHHHHHHHHHhC-CCCEEEEcCcHHHHHHHHHHH--cCCCCCEEEEeCCc-hHHHHHHHHHCCCEEEEecCccC
Confidence 355556667777777774 445555 88889999999884 23345566665554 44445555555543322111111
Q ss_pred CCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c
Q 011959 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 293 (474)
Q Consensus 215 ~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r 293 (474)
... -..-..|++++++.+++++ ++++|++... +.+|.+.+ +++|.++|++||++||+||+|... .
T Consensus 132 ~~~--------~~~~~i~~~~l~~~l~~~~-~~k~v~l~~p-~~~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~~ 197 (294)
T cd00615 132 PYY--------GIAGGIPPETFKKALIEHP-DAKAAVITNP-TYYGICYN----LRKIVEEAHHRGLPVLVDEAHGAHFR 197 (294)
T ss_pred ccc--------CcCCCCCHHHHHHHHHhCC-CceEEEEECC-CCCCEecC----HHHHHHHHHhcCCeEEEECcchhhhc
Confidence 100 0000128999999997643 4555555432 45788888 999999999999999999999643 2
Q ss_pred cCCCccccccCCCCcee--ehhhhcCCCcceEEE-EecHHH--HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--
Q 011959 294 LAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY-GGRRDI--MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-- 366 (474)
Q Consensus 294 ~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~-~~~~~i--~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-- 366 (474)
.+............|++ +++|+++ |++.|++ ..+.+. .+.+.. ......|.+.+.+.+++..++++.+..
T Consensus 198 ~~~~~~~~~~~~~~div~~S~hK~l~-g~~~~~~l~~~~~~~~~~~~~~--~~~~~~ttsps~~~~asl~~a~~~~~~~g 274 (294)
T cd00615 198 FHPILPSSAAMAGADIVVQSTHKTLP-ALTQGSMIHVKGDLVNPDRVNE--ALNLHQSTSPSYLILASLDVARAMMALEG 274 (294)
T ss_pred cCcccCcchhhcCCcEEEEchhcccc-hHhHHHHHHhCCCcCCHHHHHH--HHHHHCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 22111111112234655 6889884 5655554 343331 122221 112233556677777777778776643
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 011959 367 PGTYEYLNKITGELTQGII 385 (474)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~ 385 (474)
.++.+++.++.+++++.|+
T Consensus 275 ~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 275 KELVEELIELALYARQEIN 293 (294)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567777777777777764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-13 Score=134.21 Aligned_cols=315 Identities=17% Similarity=0.135 Sum_probs=181.4
Q ss_pred CCHHHHHHHHHHHHhcCCC------CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeC
Q 011959 116 ADDQVLAALGETMKKGTSF------GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 189 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~------~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (474)
-++++.+++.+.+...... +........+.+.+++++ +.+.++++|||+.|+..++. .+..+++||+.+.
T Consensus 98 l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~-Gae~a~vv~sgtaAl~l~l~---~l~~GdeVIvs~~ 173 (464)
T PRK04311 98 LSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALT-GAEDALVVNNNAAAVLLALN---ALAAGKEVIVSRG 173 (464)
T ss_pred CCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHH---HhCCCCEEEEcch
Confidence 3689999999988764311 111233457777787777 56788999999999999886 4567788888765
Q ss_pred CCC--CCch---hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC---CCHHHHHHHHhcCCCCeEEEEEccccCC--C
Q 011959 190 CYH--GHAD---PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNKGEIAAIILEPVVGN--S 259 (474)
Q Consensus 190 ~yh--g~~~---~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~---~d~~~le~~l~~~~~~~a~vi~ep~~~~--~ 259 (474)
.+. |... ..+...|. .+..++. .+++++++.+.. ++++|+++...|. .
T Consensus 174 e~~~~ggs~~i~~~~~~~G~-------------------~l~~v~~~~~t~~~dle~aI~~---~TklV~~vh~sN~~i~ 231 (464)
T PRK04311 174 ELVEIGGAFRIPDVMRQAGA-------------------RLVEVGTTNRTHLRDYEQAINE---NTALLLKVHTSNYRIE 231 (464)
T ss_pred hhhhcCcchhhHHHHHHCCc-------------------EEEEECCCCCCCHHHHHHhcCc---cCeEEEEEcCCCcccc
Confidence 332 2111 11222222 2222222 268889988863 5777777765543 4
Q ss_pred C--cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c-cC------CCccccccCCCCceeehh--hhcCCCcceEEEEe
Q 011959 260 G--FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R-LA------YGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGG 327 (474)
Q Consensus 260 G--~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r-~g------~~~~~~~~g~~pdi~t~s--K~l~~G~~iG~~~~ 327 (474)
| ...+ +++|.++|++||+++|+|... |. . .+ .....+......|++++| |.++|. ..|++++
T Consensus 232 G~~~~~d----l~eI~~lak~~gi~vivD~gs-G~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~~G~i~g 305 (464)
T PRK04311 232 GFTKEVS----LAELAALGKEHGLPVVYDLGS-GSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-QAGIIVG 305 (464)
T ss_pred ccCCcCC----HHHHHHHHHHcCCeEEEECCC-cccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC-ceEEEEE
Confidence 5 3455 999999999999999999953 22 1 11 111122222456888776 999864 3788899
Q ss_pred cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCH------------HHHHHHHHHHHHHHHHHHhhhcCC
Q 011959 328 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGT------------YEYLNKITGELTQGIIDAGKKAGH 393 (474)
Q Consensus 328 ~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~------------~~~~~~~~~~l~~~L~~~~~~~~~ 393 (474)
++++++.++.. + ..-.+...-...++..++|....+ +.+ .+++.++.+.+.+.|++.... ++
T Consensus 306 ~~~li~~l~~~-~--~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~-~~ 381 (464)
T PRK04311 306 KKELIARLKKH-P--LKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGA-AF 381 (464)
T ss_pred cHHHHHHHhhc-h--hHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCC-Ce
Confidence 99999877631 1 111222334455555556653322 112 256666777777777654210 11
Q ss_pred eeEEe------eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC--CeEecccCCcceEE-ecCCcHHHHHHHH
Q 011959 394 AICGG------YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE--GVYFAPSQFEAGFT-SLAHSSDDIQHTI 464 (474)
Q Consensus 394 ~~~v~------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--Gv~v~~~~~~~~~~-~~~~t~e~i~~~l 464 (474)
...+. |.|.+-...+ ..+.-...+.......+.+.|.+. .|+.+. ....+.+ .-+..++|++.++
T Consensus 382 ~~~~~~~~~~~gggs~p~~~~-----~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r~-~~~~~~ld~r~~~~~~~~~~~ 455 (464)
T PRK04311 382 AVEVVPSFSQVGGGSLPVDRL-----PSAAVTLTPKDRSLEALAARLRLLPPPVIGRI-EDGRLLLDLRTLEEEDEERLA 455 (464)
T ss_pred eEEEEEccCccCCCCCcCCCC-----CeEEEEEeCCCCCHHHHHHHHhcCCCCEEEEE-ECCEEEEEeCcCCHHHHHHHH
Confidence 11111 2222211111 000001111112235667776653 466543 2334555 4577899999999
Q ss_pred HHHHHHHh
Q 011959 465 TAAEKVLR 472 (474)
Q Consensus 465 ~~l~~~~~ 472 (474)
++|.+++.
T Consensus 456 ~~~~~~~~ 463 (464)
T PRK04311 456 AALLEALN 463 (464)
T ss_pred HHHHHHhh
Confidence 99998764
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-13 Score=138.83 Aligned_cols=208 Identities=13% Similarity=0.165 Sum_probs=140.5
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhH---HHhcCCCCccCCCCCC
Q 011959 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDS 214 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~~ 214 (474)
++...+|+++++++. +.+.+++++||+.|+..++. ....+++||+.++.|.+..... +...|.
T Consensus 132 npt~~aLE~~lA~le-g~e~ai~~~SG~aAi~~il~---ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~---------- 197 (464)
T PLN02509 132 NPTRDALESLLAKLD-KADRAFCFTSGMAALSAVTH---LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV---------- 197 (464)
T ss_pred CHHHHHHHHHHHHHh-CCCEEEEeCcHHHHHHHHHH---HhCCCCEEEEcCCchhhHHHHHHHHHHHCCe----------
Confidence 466788999998887 56778888999998865554 3556788998888886643211 111121
Q ss_pred CCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Ccc
Q 011959 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFR 293 (474)
Q Consensus 215 ~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r 293 (474)
.+..++.+|++++++.+. +++++|++|.+.|++|.+.+ +++|.++|++||++||+||+|. ++.
T Consensus 198 ---------~v~~vd~~d~e~l~~ai~---~~TklV~lesPsNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a~~~~ 261 (464)
T PLN02509 198 ---------VVKRVNTTNLDEVAAAIG---PQTKLVWLESPTNPRQQISD----IRKIAEMAHAQGALVLVDNSIMSPVL 261 (464)
T ss_pred ---------EEEEeCCCCHHHHHHhCC---cCCeEEEEECCCCCCCCHHH----HHHHHHHHHHcCCEEEEECCcccccc
Confidence 244455668899988885 36789999999999999877 9999999999999999999984 221
Q ss_pred cCCCccccccCCCCcee--ehhhhcCC-C-cceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCC
Q 011959 294 LAYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (474)
Q Consensus 294 ~g~~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (474)
+. ..+...|++ +++|.++| | .-.|+++++ +++.+.+.. .........+|..++.++..|+.+ +.
T Consensus 262 -~~-----pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~---~~~~~g~~l~p~~A~l~lr~L~tL--~~ 330 (464)
T PLN02509 262 -SR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF---LQNSEGSGLAPFDCWLCLRGIKTM--AL 330 (464)
T ss_pred -CC-----hhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHH---HHHhcCCCcCHHHHHHHHhhhhhH--HH
Confidence 11 122335665 68899985 3 335556554 444443321 001111234777888877777766 34
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011959 369 TYEYLNKITGELTQGIID 386 (474)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~ 386 (474)
.+++..++.+++.+.|++
T Consensus 331 R~~r~~~nA~~la~~L~~ 348 (464)
T PLN02509 331 RIEKQQENARKIAMYLSS 348 (464)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 667777777888777765
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.6e-13 Score=121.67 Aligned_cols=310 Identities=11% Similarity=0.085 Sum_probs=195.7
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEe
Q 011959 111 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 188 (474)
Q Consensus 111 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~ 188 (474)
+++||.+|++.+-+.+.++. +...|. ...-.++..||+.++|+|+-. .+.++++|+++.
T Consensus 39 ~~lgh~sPe~~qIm~~v~eg-----------------ikyVFkT~n~~tf~isgsGh~g~E~al~N--~lePgd~vLv~~ 99 (385)
T KOG2862|consen 39 PSLGHMSPEFVQIMDEVLEG-----------------IKYVFKTANAQTFVISGSGHSGWEAALVN--LLEPGDNVLVVS 99 (385)
T ss_pred CccccCCHHHHHHHHHHHHH-----------------HHHHhccCCCceEEEecCCcchHHHHHHh--hcCCCCeEEEEE
Confidence 67888888887776665443 111221 234567888999999999985 455778888887
Q ss_pred CCCCCCchhHHH-hcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHH
Q 011959 189 GCYHGHADPFLV-KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 267 (474)
Q Consensus 189 ~~yhg~~~~~~~-~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~ 267 (474)
.+-.|....-+. ..|..+.....+....+ .+|.+++.|.+| ++.+|.+...-+.+|++.+-
T Consensus 100 ~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~--------------~le~i~~~lsqh--~p~~vfv~hgdsSTgV~q~~-- 161 (385)
T KOG2862|consen 100 TGTWGQRAADCARRYGAEVDVVEADIGQAV--------------PLEEITEKLSQH--KPKAVFVTHGDSSTGVLQDL-- 161 (385)
T ss_pred echHHHHHHHHHHhhCceeeEEecCcccCc--------------cHHHHHHHHHhc--CCceEEEEecCccccccchH--
Confidence 766664433332 23444433322222222 589999999987 67888888888889988772
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCC--c--cc
Q 011959 268 FLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP--M--YQ 343 (474)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~--~--~~ 343 (474)
++.+.++|++|+++|++|-|-+ -.|..|.++.+|++.-...-.|++++.-.++-+..++..++.++..+. . +.
T Consensus 162 -~~~~g~lc~k~~~lllVD~VaS--lggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yF 238 (385)
T KOG2862|consen 162 -LAISGELCHKHEALLLVDTVAS--LGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYF 238 (385)
T ss_pred -HHHHHHHhhcCCeEEEEechhh--cCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEE
Confidence 5567789999999999998885 234567788888865555678999942224447788888888875332 1 00
Q ss_pred ----cc------------CCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeE
Q 011959 344 ----AG------------TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 404 (474)
Q Consensus 344 ----~~------------t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~ 404 (474)
.. .+..+........++|..+-+ ++.+++.++++++++..|++++.+.-...+
T Consensus 239 d~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e-------- 310 (385)
T KOG2862|consen 239 DILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDE-------- 310 (385)
T ss_pred eHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecCh--------
Confidence 00 112233344455577776655 566777788888888888876432211000
Q ss_pred EEEEecCCCcCcccccccchHHHHHHHHHHHHCC-eEeccc----CCcceEE---ecCCcHHHHHHHHHHHHHHHhh
Q 011959 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG-VYFAPS----QFEAGFT---SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~----~~~~~~~---~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
..........+.|...+..++...+..++ +.+..+ ....+|| ....+.|.|+..++.|..++++
T Consensus 311 -----~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 311 -----ELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred -----hhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 00011111223344444577888888884 444433 2234566 3456889999999999988864
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=5e-13 Score=137.23 Aligned_cols=320 Identities=18% Similarity=0.199 Sum_probs=180.7
Q ss_pred CCCHHHHHHHHHHHH--hcCCCC------CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh--c----C
Q 011959 115 HADDQVLAALGETMK--KGTSFG------APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--T----G 180 (474)
Q Consensus 115 ~~~p~v~~a~~~~~~--~~~~~~------~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~--~----~ 180 (474)
|.+|.+++++.+... ..+.|. +..+...++.++++++++-.+..++.++|+.+...++.+++.+ . +
T Consensus 81 ~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~ 160 (481)
T PRK04366 81 KYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTK 160 (481)
T ss_pred CCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCC
Confidence 457888888877521 223331 1125567888888888852233455567777776655544432 1 3
Q ss_pred CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCC
Q 011959 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (474)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (474)
+++|++.++.| +.+...+...|..+..++.. ..+ ..|+++|++.+.. ++++|++..++ ++|
T Consensus 161 ~~~Vlv~~~~h-p~~~~~~~~~G~~vv~v~~~-~~~-------------~~D~e~L~~~i~~---~t~~V~v~~Pn-~tG 221 (481)
T PRK04366 161 RTEVIVPDSAH-GTNPASAAMAGFKVVEIPSN-EDG-------------LVDLEALKAAVGE---DTAALMLTNPN-TLG 221 (481)
T ss_pred CCEEEEcCCcc-HhHHHHHHHcCCEEEEeecC-CCC-------------CcCHHHHHhhccc---CCeEEEEeCCC-Ccc
Confidence 34777776654 54555555445433322211 001 1178999988863 56676665433 667
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccCCCccccccCCCCceee--hhhhcC-----CCcceEEEEecHHHH
Q 011959 261 FIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTT--LGKIIG-----GGLPVGAYGGRRDIM 332 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pdi~t--~sK~l~-----~G~~iG~~~~~~~i~ 332 (474)
.+ ..+ +++|.++|+++|+++|+|+++. +. .+.. ....+| .|+++ ..|.|+ ||.-+|++.+++++.
T Consensus 222 ~~--~~d-l~eI~~~a~~~gal~iVD~a~~~~~-~g~~-~~~~~G--aD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~ 294 (481)
T PRK04366 222 LF--ERN-ILEIAEIVHEAGGLLYYDGANLNAI-LGKA-RPGDMG--FDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELA 294 (481)
T ss_pred cc--chH-HHHHHHHHHHcCCEEEEEecChhhh-cccC-CccccC--CCEEEEechhhcCCCCCCCCCCeeeeeehhhhH
Confidence 55 122 9999999999999999999983 21 1111 112234 47764 459887 234578888888887
Q ss_pred HhhcCC-----CCcc-----------cccCCCCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHhhhcCC
Q 011959 333 EMVAPA-----GPMY-----------QAGTLSGNPLAMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGH 393 (474)
Q Consensus 333 ~~~~~~-----~~~~-----------~~~t~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~ 393 (474)
+.+... +..+ ..-.++++.+.+.++...+..+-.+++ .++..++.++++++|.++ +.+
T Consensus 295 ~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~---~~~ 371 (481)
T PRK04366 295 PFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI---YDL 371 (481)
T ss_pred hhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---Ccc
Confidence 766310 0000 011122344455555555555443433 355667788999999876 222
Q ss_pred eeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----CcceEEe--cCCcHHHHHHHHHH
Q 011959 394 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTS--LAHSSDDIQHTITA 466 (474)
Q Consensus 394 ~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~~~--~~~t~e~i~~~l~~ 466 (474)
.. .+ ..+-.+.+.... + . .......++.+.|.++|+.+.... ...++++ ..+|++|||++++.
T Consensus 372 ~~--~~-~~~~~~~~~~~~---~---~-~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~ 441 (481)
T PRK04366 372 PY--DR-PCMHEFVLSGKK---L---K-ETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAA 441 (481)
T ss_pred cC--CC-CeeEEEEEECcc---c---c-ccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHH
Confidence 21 11 111111111100 0 0 001123678999999999876322 2234554 46799999999999
Q ss_pred HHHHHhh
Q 011959 467 AEKVLRQ 473 (474)
Q Consensus 467 l~~~~~~ 473 (474)
|+++.++
T Consensus 442 l~~i~~~ 448 (481)
T PRK04366 442 MKQIAEE 448 (481)
T ss_pred HHHHHHH
Confidence 9988764
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.2e-13 Score=134.29 Aligned_cols=298 Identities=11% Similarity=0.021 Sum_probs=176.5
Q ss_pred CHHHHHHHHHHHhhCCC--CCeEEEeCCHH-HHHHHHHHHhHhhc-CCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-C
Q 011959 138 CLLENVLAEMVISAVPS--IEMVRFVNSGT-EACMGVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-P 212 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~--~~~v~~~~sGs-eA~~~al~~ar~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~ 212 (474)
..+..++.+.+.++++- .+.++++++|| .++.+++..++... +.+.||+.... |-....++...|..+..++. .
T Consensus 104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~t-h~S~~kAi~~~G~~pv~Vd~~~ 182 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRID-QKSCIKAISTAGFEPRVIETVL 182 (444)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcC-hHHHHHHHHHcCCeEEEeeeee
Confidence 45566777777777742 24799999999 68888888665432 34566666555 66667777776764332221 0
Q ss_pred CCCCCCCCCCCceEEccCC-CHHHHHHHHhcCC-CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 011959 213 DSPGVPKGATYETLTAPFN-DVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290 (474)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~-d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (474)
.... ++ |+++|++.|+... +.+.+|+..|..+..|...+ +++|.++|++||++||+|++|.
T Consensus 183 d~~~-------------~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~dd----L~eIa~la~k~gI~lIvDaAyg 245 (444)
T TIGR03531 183 DGDE-------------LTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDD----IEEIAKICANYDIPHIVNNAYG 245 (444)
T ss_pred cCcC-------------CCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhC----HHHHHHHHHHcCCEEEEECcCc
Confidence 0000 11 8999999998543 45566666665444445555 9999999999999999999996
Q ss_pred Cc--ccCCCccccccCC-CCcee--ehhhhcCC-CcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH
Q 011959 291 GF--RLAYGGAQEYFGV-TPDLT--TLGKIIGG-GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 363 (474)
Q Consensus 291 g~--r~g~~~~~~~~g~-~pdi~--t~sK~l~~-G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~ 363 (474)
.. ..... ....... ..|++ .++|.+.. |+ .|.++. ++++++.+.. .+.+ .. .+...+.+....+..
T Consensus 246 ~~~~~~~~~-~~~g~~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~---~y~g-~~-~~s~~~~~~~~ll~~ 318 (444)
T TIGR03531 246 LQSNKYMEL-INKAIKVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISK---SYPG-RA-SASPSLDVLITLLSL 318 (444)
T ss_pred CcChhhhhh-hhccccccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHH---hccC-CC-CChHHHHHHHHHHHh
Confidence 32 11100 0011111 23655 46799883 44 444446 6778887763 2222 21 223455555555544
Q ss_pred hcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCe-eEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeE
Q 011959 364 LKE--PGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (474)
Q Consensus 364 ~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (474)
-.+ .+++++..++.+++.+.|+++..+++.. .+++...--+++.+..-. ......+...|..++|-
T Consensus 319 G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~-----------~~~~~~~g~~l~~~~v~ 387 (444)
T TIGR03531 319 GSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK-----------GKDPTMLGSMLYSRRVT 387 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc-----------ccCHHHHHHHHHhCCCC
Confidence 333 6778888888999999999987777632 222222223333332110 11124566666676551
Q ss_pred ----ecccC-----------Ccc-------eEE----ecCCcHHHHHHHHHHHHHHH
Q 011959 441 ----FAPSQ-----------FEA-------GFT----SLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 441 ----v~~~~-----------~~~-------~~~----~~~~t~e~i~~~l~~l~~~~ 471 (474)
+.++. ++. -++ .+.++++|||.++++|++++
T Consensus 388 g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 388 GPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred CceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 22221 000 022 36779999999999999864
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-13 Score=136.59 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++....|.+.++++. +.+..++++||+.|+..++.. ....+++|++.++.|++..........
T Consensus 62 ~~p~~~~Le~~lA~le-g~~~al~~~sG~~Ai~~al~~--ll~~GD~Vlv~~~~y~~t~~~~~~~~~------------- 125 (431)
T PRK08248 62 MNPTTDVFEKRIAALE-GGIGALAVSSGQAAITYSILN--IASAGDEIVSSSSLYGGTYNLFAHTLP------------- 125 (431)
T ss_pred CCchHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHH--HhCCCCEEEEccCchhhHHHHHHHHHH-------------
Confidence 4555678888888887 467889999999999999974 245567888888877764432211100
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g 295 (474)
..+.++..++..|++++++.++. ++++|+++.+.|++|.+.+ +++|.++|++||+++|+|+++. ++.
T Consensus 126 ---~~Gv~v~~vd~~d~e~l~~ai~~---~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a~~~~-- 193 (431)
T PRK08248 126 ---KLGITVKFVDPSDPENFEAAITD---KTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFASPYL-- 193 (431)
T ss_pred ---hCCEEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEeCCCCcccc--
Confidence 01123555566689999998863 5788899888888999998 8999999999999999999984 221
Q ss_pred CCccccccCCCCcee--ehhhhcCC-CcceEEEEe
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGG 327 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G~~iG~~~~ 327 (474)
........|++ +++|.+++ |.++|+++.
T Consensus 194 ----~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 194 ----LRPIEHGADIVVHSATKFIGGHGTSIGGVIV 224 (431)
T ss_pred ----CChhHcCCCEEEEcCccccCCCCCceEEEEE
Confidence 11112234655 68899995 788888765
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.4e-13 Score=132.64 Aligned_cols=309 Identities=17% Similarity=0.111 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchh
Q 011959 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197 (474)
Q Consensus 118 p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~ 197 (474)
++-++++.+.+..+... ......+|.+.+++++ +.++.++++||++|+..+++.. ....+++||+..++|++.. .
T Consensus 10 ~~~~~~v~~~~~~~~~~--~g~~~~~le~~la~~~-g~~~~v~~~sgt~al~~~l~al-~~~~Gd~Viv~~~~~~~~~-~ 84 (380)
T TIGR03588 10 QDDIDAVVEVLKSDFLT--QGPTVPAFEEALAEYV-GAKYAVAFNSATSALHIACLAL-GVGPGDRVWTTPITFVATA-N 84 (380)
T ss_pred HHHHHHHHHHHhcCCcc--CChhHHHHHHHHHHHH-CCCeEEEEcCHHHHHHHHHHHc-CCCCCCEEEeCCcchHHHH-H
Confidence 45577888887765322 2334566777777777 4566777889999999999842 1345678888888876643 3
Q ss_pred HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC-CCeEEEEEccccCCCCcccCCHHHHHHHHHHH
Q 011959 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
.+...|..+...+.....+ ..|++++++.+++++ +++++|++.. ..|...+ +++|.++|
T Consensus 85 ~~~~~G~~~~~~~~~~~~~-------------~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~----~~~i~~l~ 144 (380)
T TIGR03588 85 CALYCGAKVDFVDIDPDTG-------------NIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSVD----MQAIAALA 144 (380)
T ss_pred HHHHcCCEEEEEecCCCcC-------------CcCHHHHHHHhhcccCCCceEEEEeC---CCCccCC----HHHHHHHH
Confidence 3333343322211100000 127899999987421 2456666432 3576666 99999999
Q ss_pred HHhCCEEEEecccc-Cc-ccCCCccccccCC--CCceeehh----hhcCCCcceEEEEe-cHHHHHhhcCC---CC----
Q 011959 277 KENGALLIFDEVMT-GF-RLAYGGAQEYFGV--TPDLTTLG----KIIGGGLPVGAYGG-RRDIMEMVAPA---GP---- 340 (474)
Q Consensus 277 ~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~--~pdi~t~s----K~l~~G~~iG~~~~-~~~i~~~~~~~---~~---- 340 (474)
++||++||+|++|+ |. ..+ ...|. .-|+.++| |.++.| ..|+++. ++++.+.++.. +.
T Consensus 145 ~~~~~~lI~D~a~a~g~~~~~-----~~~g~~~~~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~ 218 (380)
T TIGR03588 145 KKHGLKIIEDASHALGAEYGG-----KPVGNCRYADATVFSFHPVKIITTA-EGGAVTTNDEELAERMRLLRSHGITKDP 218 (380)
T ss_pred HHcCCEEEEECCCcccCccCC-----EeCCCccccceEEEecCCCCccccc-CceEEEECCHHHHHHHHHHHHCCCCCCc
Confidence 99999999999996 22 111 12233 33776544 888754 4565654 46666654310 00
Q ss_pred -----------cc----cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE---eeece
Q 011959 341 -----------MY----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG---GYISG 402 (474)
Q Consensus 341 -----------~~----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v---~~~g~ 402 (474)
.+ .+..+..+.+.++.+++.|+.+ +...++.+++.+++.+.|..+. ........ ...-.
T Consensus 219 ~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~ 295 (380)
T TIGR03588 219 LLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRLLKDLP-YFTPLTIPLGSKSAWH 295 (380)
T ss_pred ccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCC-CccCCCCCCCCEeEEE
Confidence 00 0112334556666666666654 4566667777777877776542 11101000 01112
Q ss_pred eEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-------------------------cceEEe--cCC
Q 011959 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------------------------EAGFTS--LAH 455 (474)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~~~--~~~ 455 (474)
++.+.+.... ....+.+.+.|.++||.+..... ..+.++ ...
T Consensus 296 ~~~i~~~~~~-----------~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l 364 (380)
T TIGR03588 296 LYPILLDQEF-----------GCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPAL 364 (380)
T ss_pred EEEEEECCcC-----------CCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCC
Confidence 2223332100 01236788888999987653210 012333 345
Q ss_pred cHHHHHHHHHHHHHHH
Q 011959 456 SSDDIQHTITAAEKVL 471 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~ 471 (474)
|++|++.+++.|++++
T Consensus 365 ~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 365 TLEQQQRVVETLRKVL 380 (380)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999998864
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-13 Score=133.43 Aligned_cols=239 Identities=14% Similarity=0.064 Sum_probs=147.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++....|+++++.... .+..++++||++|+..++.. ....+++||+.++.|.++......... ..|
T Consensus 62 gnPt~~~Le~~la~le~-~~~~v~~sSG~aAi~~~l~a--ll~~GD~Vlv~~~~Y~~~~~l~~~~l~----------~~G 128 (395)
T PRK05967 62 GTPTTDALCKAIDALEG-SAGTILVPSGLAAVTVPFLG--FLSPGDHALIVDSVYYPTRHFCDTMLK----------RLG 128 (395)
T ss_pred CChHHHHHHHHHHHHhC-CCCEEEECcHHHHHHHHHHH--hcCCCCEEEEccCCcHHHHHHHHHHHH----------hcC
Confidence 46667788888887764 34556777799999999874 345678899999888875432211100 001
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (474)
.++..++.++.+.+++.++. ++++|++|.+.|+.+.+.+ +++|.++|+++|+++|+|+++... .
T Consensus 129 ------i~v~~vd~~~~e~l~~al~~---~TklV~lesPsNP~l~v~d----l~~I~~la~~~g~~vvVD~t~a~p---~ 192 (395)
T PRK05967 129 ------VEVEYYDPEIGAGIAKLMRP---NTKVVHTEAPGSNTFEMQD----IPAIAEAAHRHGAIVMMDNTWATP---L 192 (395)
T ss_pred ------eEEEEeCCCCHHHHHHhcCc---CceEEEEECCCCCCCcHHH----HHHHHHHHHHhCCEEEEECCccCc---e
Confidence 12333444466788888863 5889999988888877777 999999999999999999999532 0
Q ss_pred CccccccCCCCceeehhhhcCC--CcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHH
Q 011959 297 GGAQEYFGVTPDLTTLGKIIGG--GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 374 (474)
Q Consensus 297 ~~~~~~~g~~pdi~t~sK~l~~--G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 374 (474)
..-.-.+|.+.-+.+++|.++| ..-.|++++++++.+.+... ....+ ...+|..+...+..|+.+ .-..++..
T Consensus 193 ~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~--~~~~G-~~~~p~da~l~~rgl~Tl--~lR~~~~~ 267 (395)
T PRK05967 193 YFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEA--HGTLG-LCAGPDDTYQILRGLRTM--GIRLEHHR 267 (395)
T ss_pred ecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHH--HHHcC-CCCCHHHHHHHHcCcccH--HHHHHHHH
Confidence 1111123443333479999985 36788778888766655411 11112 235666655544444332 22344555
Q ss_pred HHHHHHHHHHHHHhh----hcC-Ce---------eEEeeeceeEEEEEe
Q 011959 375 KITGELTQGIIDAGK----KAG-HA---------ICGGYISGMFGFFFT 409 (474)
Q Consensus 375 ~~~~~l~~~L~~~~~----~~~-~~---------~~v~~~g~~~~i~~~ 409 (474)
++...+.+.|++.-. .|| +. ....+.|.++.|++.
T Consensus 268 ~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~ 316 (395)
T PRK05967 268 KSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLA 316 (395)
T ss_pred HHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEc
Confidence 566666666654310 011 00 012356888999985
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.7e-13 Score=132.42 Aligned_cols=304 Identities=18% Similarity=0.190 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchh
Q 011959 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197 (474)
Q Consensus 118 p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~ 197 (474)
.+.++++.+.++.+. ++.......++.+.+++++ +.+.++.++||+.|++.|++.. ...++++||+..-+|.+.. .
T Consensus 5 ~e~~~~v~~~l~s~~-~~~~g~~~~~fE~~~a~~~-g~~~~~~~~sgt~Al~~al~~l-~~~~gdeVi~p~~t~~~~~-~ 80 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGW-LSTYGPYVEEFEKEFAEYF-GVKYAVAVSSGTSALHLALRAL-GLGPGDEVIVPAYTFPATA-S 80 (363)
T ss_dssp HHHHHHHHHHHHHTC-CSSSSHHHHHHHHHHHHHH-TSSEEEEESSHHHHHHHHHHHT-TGGTTSEEEEESSS-THHH-H
T ss_pred HHHHHHHHHHHHhCC-ccCCCHHHHHHHHHHHHHh-CCCeEEEeCChhHHHHHHHHhc-CCCcCceEecCCCcchHHH-H
Confidence 456777888887763 2222455666777777766 6889999999999999999953 4456788998876776643 3
Q ss_pred HHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHH
Q 011959 198 FLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 198 ~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
++...|..+.-.+. |....+ |++++++.++. ++++|++-...|. ..+ +++|.++|
T Consensus 81 ai~~~G~~pv~~Di~~~~~~i--------------d~~~~~~~i~~---~t~ai~~~h~~G~---~~d----~~~i~~~~ 136 (363)
T PF01041_consen 81 AILWAGAEPVFVDIDPETLNI--------------DPEALEKAITP---KTKAILVVHLFGN---PAD----MDAIRAIA 136 (363)
T ss_dssp HHHHTT-EEEEE-BETTTSSB---------------HHHHHHHHHT---TEEEEEEE-GGGB----------HHHHHHHH
T ss_pred HHHHhccEEEEEeccCCcCCc--------------CHHHHHHHhcc---CccEEEEecCCCC---ccc----HHHHHHHH
Confidence 33334432221111 111111 89999999984 5788888777654 334 99999999
Q ss_pred HHhCCEEEEecccc-Cc-ccCCCccccccCCCCceeehh----hhcCCCcceEEEEec-HHHHHhhc---CCCC------
Q 011959 277 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVA---PAGP------ 340 (474)
Q Consensus 277 ~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~t~s----K~l~~G~~iG~~~~~-~~i~~~~~---~~~~------ 340 (474)
++||++||.|-+|+ |- ..| ...|-.-|+.+|| |.++.| -.|+++.+ +++.+.++ ..+.
T Consensus 137 ~~~~i~lIeD~a~a~g~~~~g-----~~~G~~gd~~~fSf~~~K~i~~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (363)
T PF01041_consen 137 RKHGIPLIEDAAQAFGARYKG-----RPVGSFGDIAIFSFHPTKIITTG-EGGAVVTNDPELAERARALRNHGRSRDAFR 210 (363)
T ss_dssp HHTT-EEEEE-TTTTT-EETT-----EETTSSSSEEEEESSTTSSS-SS-S-EEEEESTHHHHHHHHHHTBTTEETSECS
T ss_pred HHcCCcEEEccccccCceeCC-----EeccCCCCceEecCCCCCCCcCC-CCeeEEecHHHHHHHhhhhhccCcCccccc
Confidence 99999999999995 22 222 2223334776654 988744 25777665 45554443 2110
Q ss_pred cc-----cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh--cCCeeEEe-eeceeEEEEEecCC
Q 011959 341 MY-----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK--AGHAICGG-YISGMFGFFFTEGP 412 (474)
Q Consensus 341 ~~-----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~v~-~~g~~~~i~~~~~~ 412 (474)
.+ .+..+..+.+.++.+++.|+.+ +...++-+++.+++++.|.....- .+...... .....+.+.+.+..
T Consensus 211 ~~~~~~~~g~n~rm~~~~AAigl~QL~~L--~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~ 288 (363)
T PF01041_consen 211 RYRHELPPGYNFRMSELQAAIGLAQLKRL--DEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEA 288 (363)
T ss_dssp TTEESSSS--B-B-BHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCG
T ss_pred cccccccCCcccccHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccc
Confidence 01 1234566788888888888755 345555566666666666554210 00000000 11222333332210
Q ss_pred CcCcccccccchHHHHHHHHHHHHCCeEecccCC-c-----c----------------------eEEe--cCCcHHHHHH
Q 011959 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-E-----A----------------------GFTS--LAHSSDDIQH 462 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~-----~----------------------~~~~--~~~t~e~i~~ 462 (474)
. ...+.+.+.|.++||-+.+... + . +.++ ...+++++++
T Consensus 289 ~-----------~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~ 357 (363)
T PF01041_consen 289 L-----------ADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDY 357 (363)
T ss_dssp C-----------STHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHH
T ss_pred c-----------chHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHH
Confidence 0 1136789999999998766431 0 0 1333 4669999999
Q ss_pred HHHHHH
Q 011959 463 TITAAE 468 (474)
Q Consensus 463 ~l~~l~ 468 (474)
++++|+
T Consensus 358 I~~~ir 363 (363)
T PF01041_consen 358 IAEAIR 363 (363)
T ss_dssp HHHHHH
T ss_pred HhhccC
Confidence 998874
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-12 Score=129.24 Aligned_cols=310 Identities=14% Similarity=0.126 Sum_probs=175.8
Q ss_pred CCHHHHHHHHHHHHhcCC--C----CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeC
Q 011959 116 ADDQVLAALGETMKKGTS--F----GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 189 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~--~----~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (474)
-++++++++.+.+..... + +........+.+.+++++ +.+..++++||+.|+..++. .+..+++||+.++
T Consensus 93 l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~-gae~alvv~sg~aAi~l~l~---~l~~GdeVIvs~~ 168 (454)
T TIGR00474 93 LAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELT-GAEDALVVNNNAAAVLLALN---TLAKGKEVIVSRG 168 (454)
T ss_pred CCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHH---HhCCcCEEEECCC
Confidence 479999999998876321 1 112234467778888877 55667889999999998886 4667788888766
Q ss_pred CC---CCCch--hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC---CCHHHHHHHHhcCCCCeEEEEEccccCC--C
Q 011959 190 CY---HGHAD--PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNKGEIAAIILEPVVGN--S 259 (474)
Q Consensus 190 ~y---hg~~~--~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~---~d~~~le~~l~~~~~~~a~vi~ep~~~~--~ 259 (474)
.+ .|... ..+...|. .+..++. .|++++++.+.. ++++|+++...|. .
T Consensus 169 e~v~~ggs~~i~~~~~~~G~-------------------~~~~v~~~~~~~l~dle~aI~~---~T~lv~~~h~sN~~~~ 226 (454)
T TIGR00474 169 ELVEIGGSFRIPDVMEQSGA-------------------KLVEVGTTNRTHLKDYEDAITE---NTALLLKVHTSNYRIV 226 (454)
T ss_pred hhhhhcchhhHHHHHHHcCC-------------------EEEEeCCCCCCCHHHHHHhcCc---CCEEEEEEccCccccc
Confidence 53 22211 11122222 2333333 368889888863 5777777665443 4
Q ss_pred C--cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc-C------CCccccccCCCCceeehh--hhcCCCcceEEEEe
Q 011959 260 G--FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-A------YGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGG 327 (474)
Q Consensus 260 G--~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~-g------~~~~~~~~g~~pdi~t~s--K~l~~G~~iG~~~~ 327 (474)
| .+.+ +++|.++|++||+++|+|... |. .. + .+..++......|++++| |.++|. ..|++++
T Consensus 227 G~~~~~d----l~~I~~la~~~g~~vivD~~s-G~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp-~~G~i~g 300 (454)
T TIGR00474 227 GFTEEVS----IAELVALGREHGLPVMEDLGS-GSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP-QAGIIVG 300 (454)
T ss_pred CCCCCCC----HHHHHHHHHHcCCeEEEECCC-cccccchhccCCCCcccccHhHcCCCEEEecCccccCCC-eEEEEEE
Confidence 5 3667 999999999999999999642 22 11 1 111112223356899888 999764 3788899
Q ss_pred cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCH------------HHHHHHHHHHHHHHHHHHhhhcCC
Q 011959 328 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGT------------YEYLNKITGELTQGIIDAGKKAGH 393 (474)
Q Consensus 328 ~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~------------~~~~~~~~~~l~~~L~~~~~~~~~ 393 (474)
++++++.+... + ..-.+...-+..++..+++....+ +.+ .+++.++...+.+.|++... .++
T Consensus 301 ~~~~i~~l~~~-~--l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~-~~~ 376 (454)
T TIGR00474 301 KKELIERLKKN-P--LTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALG-PGF 376 (454)
T ss_pred CHHHHHhhhhc-h--hHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhcc-CCc
Confidence 99988876531 1 111122233444444555544322 111 23566677777777776421 111
Q ss_pred eeEE------eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCC--eEecccCCcceEE-ecCCcHHHHHHHH
Q 011959 394 AICG------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG--VYFAPSQFEAGFT-SLAHSSDDIQHTI 464 (474)
Q Consensus 394 ~~~v------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--v~v~~~~~~~~~~-~~~~t~e~i~~~l 464 (474)
...+ -|.|.|-.-.+ ..+.-...+.......+.+.|.+.. |+.+. ....+.+ .-+..++|++.++
T Consensus 377 ~~~~~~~~~~~ggg~~p~~~l-----~~~~v~~~~~~~~~~~l~~~lr~~~~~ii~r~-~~~~~~ld~r~~~~~~~~~~~ 450 (454)
T TIGR00474 377 ELEIVPGLSQVGGGSLPDERL-----PSYAVTLTPDGLSAEKLEARLRELPPPIIGRI-EDDRFLLDLRTLLEDEEELLI 450 (454)
T ss_pred eEEEEEcCCcccCCCCcCCCC-----CeEEEEEecCCCCHHHHHHHHhcCCCCEEEEE-ECCEEEEEeCcCCHHHHHHHH
Confidence 1111 12232221111 0011111111222356777766543 55542 2334555 4566888888888
Q ss_pred HHH
Q 011959 465 TAA 467 (474)
Q Consensus 465 ~~l 467 (474)
++|
T Consensus 451 ~~~ 453 (454)
T TIGR00474 451 EAL 453 (454)
T ss_pred HHh
Confidence 775
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-13 Score=134.19 Aligned_cols=234 Identities=10% Similarity=0.049 Sum_probs=144.1
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCC
Q 011959 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~ 217 (474)
++...+|.+.++++.+ .+..++++||+.|+..++. .+..+++||+.++.|++..........
T Consensus 53 ~p~~~~le~~lA~l~g-~~~~v~~~sG~~ai~~~l~---~l~~Gd~Vlv~~~~y~~~~~~~~~~~~-------------- 114 (390)
T PRK08064 53 NPTREALEDIIAELEG-GTKGFAFASGMAAISTAFL---LLSKGDHVLISEDVYGGTYRMITEVLS-------------- 114 (390)
T ss_pred ChhHHHHHHHHHHHhC-CCCeEEECCHHHHHHHHHH---HhCCCCEEEEccCccchHHHHHHHHHH--------------
Confidence 4555677788887774 3456777889999988885 445678899988888775432221100
Q ss_pred CCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCC
Q 011959 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 297 (474)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~ 297 (474)
..+.++..++..|++++++.++. ++++|++|.++|++|.+.+ +++|.++|+++|+++|+||+|..+.....
T Consensus 115 --~~G~~v~~v~~~d~~~l~~~l~~---~tklV~l~~p~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~~~~~ 185 (390)
T PRK08064 115 --RFGIEHTFVDMTNLEEVAQNIKP---NTKLFYVETPSNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTPLLQKP 185 (390)
T ss_pred --HcCCEEEEECCCCHHHHHHhcCC---CceEEEEECCCCCCcEecc----HHHHHHHHHHcCCEEEEECCCCcccccCc
Confidence 00113455556688999888863 5789999999899999988 99999999999999999999953311111
Q ss_pred ccccccCCCCcee--ehhhhcCC--CcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHH
Q 011959 298 GAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYE 371 (474)
Q Consensus 298 ~~~~~~g~~pdi~--t~sK~l~~--G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~ 371 (474)
. .+| .|++ +++|.++| |.-.|++++ ++++++.++. .........+|..+...+ +-++. ....+
T Consensus 186 --~-~~g--~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~---~~~~~g~~~~~~~a~l~~---~gl~tl~~R~~ 254 (390)
T PRK08064 186 --L-DLG--ADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYF---LQNSFGAVLGVQDCWLVL---RGLKTLHVRLE 254 (390)
T ss_pred --h-hhC--CcEEEeecceeccCCccceeEEEEeCCHHHHHHHHH---HHHhcCCCCCHHHHHHHH---cccCcHHHHHH
Confidence 1 123 4655 68899974 344576655 4677777752 212112233444444322 22222 23445
Q ss_pred HHHHHHHHHHHHHHHHhh--h--cCC----e------eEEeeeceeEEEEEe
Q 011959 372 YLNKITGELTQGIIDAGK--K--AGH----A------ICGGYISGMFGFFFT 409 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~--~--~~~----~------~~v~~~g~~~~i~~~ 409 (474)
+..++...+.+.|++... + ++. + ....+.|.++.|++.
T Consensus 255 ~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~ 306 (390)
T PRK08064 255 HSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQ 306 (390)
T ss_pred HHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEEC
Confidence 555566666666654310 0 110 0 023467888888884
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-12 Score=131.10 Aligned_cols=159 Identities=17% Similarity=0.192 Sum_probs=111.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
-++...+|.+.++++. +.+..+.++||+.|+..++.. ....+++||+.+..|.+..........
T Consensus 45 g~p~~~~lE~~la~le-g~~~~v~~ssG~~Ai~~~l~a--ll~~Gd~Vv~~~~~y~~t~~~~~~l~~------------- 108 (397)
T PRK05939 45 GTPTTAALEAKITKME-GGVGTVCFATGMAAIAAVFLT--LLRAGDHLVSSQFLFGNTNSLFGTLRG------------- 108 (397)
T ss_pred CCHHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHH--HcCCCCEEEECCCccccHHHHHHHHHh-------------
Confidence 3455678888888887 455677788899999999874 234567788877666553221111100
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g 295 (474)
.+.++..++..|++++++.++ +++++|++|.++|++|.+.+ +++|.++|++||+++|+|++|. +..
T Consensus 109 ----~G~~v~~v~~~d~e~l~~~l~---~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~t~a~~~~-- 175 (397)
T PRK05939 109 ----LGVEVTMVDATDVQNVAAAIR---PNTRMVFVETIANPGTQVAD----LAGIGALCRERGLLYVVDNTMTSPWL-- 175 (397)
T ss_pred ----cCCEEEEECCCCHHHHHHhCC---CCCeEEEEECCCCCCCCHHh----HHHHHHHHHHcCCEEEEECCcccccc--
Confidence 011345555668999999886 36889999999999999877 9999999999999999999984 321
Q ss_pred CCccccccCCCCcee--ehhhhcCC-CcceEEEEec
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGR 328 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G~~iG~~~~~ 328 (474)
+....+| .|++ +++|.++| |..+|+++..
T Consensus 176 --~~~~~~g--aDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 176 --FRPKDVG--ASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred --cCccccC--CEEEEecCeecccCCCCeEEEEEec
Confidence 1111123 4554 79999996 8899998664
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.2e-13 Score=133.83 Aligned_cols=255 Identities=14% Similarity=0.062 Sum_probs=157.0
Q ss_pred CHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCc
Q 011959 117 DDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 195 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~ 195 (474)
+.+-.+++.+....+..|+ ..++...+|.+.++++. +.+.++.++||+.|+.+++... ...++.||+....|.+..
T Consensus 38 ~~~~~~~~~~~~~~g~~ysR~~nPtv~~lE~~la~le-g~~~av~~~SG~aAi~~al~al--l~~GD~VI~~~~~Y~~T~ 114 (432)
T PRK06702 38 TSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELE-GGVGAVATASGQAAIMLAVLNI--CSSGDHLLCSSTVYGGTF 114 (432)
T ss_pred CHHHHHHHHhccccCceeECCCCcHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHh--cCCCCEEEECCCchHHHH
Confidence 3444444444333332222 12455678888888887 4567889999999999999842 455688999888887643
Q ss_pred hhH---HHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHH
Q 011959 196 DPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (474)
Q Consensus 196 ~~~---~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (474)
... +...|. ++..+..+ |+++++++|+. ++++|++|.+.|+++.+.+ +++
T Consensus 115 ~~~~~~l~~~Gi-------------------~v~~vd~~~d~~~l~~~I~~---~Tk~I~~e~pgnP~~~v~D----i~~ 168 (432)
T PRK06702 115 NLFGVSLRKLGI-------------------DVTFFNPNLTADEIVALAND---KTKLVYAESLGNPAMNVLN----FKE 168 (432)
T ss_pred HHHHHHHHHCCC-------------------EEEEECCCCCHHHHHHhCCc---CCeEEEEEcCCCccccccC----HHH
Confidence 321 111121 24444454 88999999974 5789999988778888888 999
Q ss_pred HHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCC-CcceEEEEe-cH----------HHHH----
Q 011959 272 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGG-RR----------DIME---- 333 (474)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~-G~~iG~~~~-~~----------~i~~---- 333 (474)
|+++|++||+++|+|+++. .+..+..+..-.||+ +++|.++| +--+|+++. .. ++.+
T Consensus 169 I~~iA~~~gi~livD~T~~-----tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~ 243 (432)
T PRK06702 169 FSDAAKELEVPFIVDNTLA-----TPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPS 243 (432)
T ss_pred HHHHHHHcCCEEEEECCCC-----chhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCccccccccccccccccc
Confidence 9999999999999999984 122233233334554 79998874 333443322 11 1110
Q ss_pred -----------------hhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh----hcC
Q 011959 334 -----------------MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK----KAG 392 (474)
Q Consensus 334 -----------------~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~ 392 (474)
.... ...... ..+.+|+.+..++..|+.+ +...++..++...+.+.|++... .+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-g~~~sp~~a~l~~rgL~Tl--~lR~~r~~~Na~~la~~L~~~p~V~~V~yP 319 (432)
T PRK06702 244 YHGVSYVQNFGAAAYIVKARV-QLLRDY-GNCMSPFNAYISNIGLETL--HLRMERHSENALAVAKWLADHERIEWVNYP 319 (432)
T ss_pred ccccchhhccchhhHHHHHHH-HHHHHc-cCCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHhCCCcceEECC
Confidence 0000 001122 2477888888777776543 44556667777777777775321 111
Q ss_pred -Cee---------EE-eeeceeEEEEEe
Q 011959 393 -HAI---------CG-GYISGMFGFFFT 409 (474)
Q Consensus 393 -~~~---------~v-~~~g~~~~i~~~ 409 (474)
+.. .. .|.|.|+.|++.
T Consensus 320 gl~~~p~~~l~~~~~~~g~gg~~sf~l~ 347 (432)
T PRK06702 320 GLDSNENYSLAQKYLKKGASGVLTFGIK 347 (432)
T ss_pred CCCCCccHHHHHHhCcCCCceEEEEEec
Confidence 100 11 356888899885
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-12 Score=125.74 Aligned_cols=197 Identities=22% Similarity=0.263 Sum_probs=128.9
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-----C-CCCCCHH-HHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-----S-FGAPCLL-ENVLAEMVISAVP-SIEMVRFVNSGTEACMGV 171 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~-~~~~~~~-~~~la~~l~~~~~-~~~~v~~~~sGseA~~~a 171 (474)
-|+|..+ .|..+|.|.+|+.+.+.... . ++.-.+. .++-++.++++.+ +..+|+||+++||++.++
T Consensus 45 vyld~~a------t~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlv 118 (428)
T KOG1549|consen 45 VYLDNQA------TGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLV 118 (428)
T ss_pred EEEecCc------CCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHH
Confidence 4666544 34579999999999887632 1 2211222 3444555666665 455699999999999999
Q ss_pred HHHh-HhhcC-Cc-EEEEEeCCCCCCchhHHHhc--CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 172 LRLA-RAFTG-RE-RIIKFEGCYHGHADPFLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 172 l~~a-r~~~~-~~-~ii~~~~~yhg~~~~~~~~~--g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
++-. +.+.. .+ .||.++..|-...++...+. |..+..++.+ ..+. -|++.+++.|+ .+
T Consensus 119 l~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~-~~~~-------------~d~~~~~~~i~---~~ 181 (428)
T KOG1549|consen 119 LKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE-DSGL-------------VDISKLREAIR---SK 181 (428)
T ss_pred HHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC-cccc-------------ccHHHHHHhcC---CC
Confidence 9843 33332 33 45555444433334443332 2222222222 1111 17888888887 37
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceee--hhhhcCC-CcceE
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIGG-GLPVG 323 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t--~sK~l~~-G~~iG 323 (474)
+++|.+..++++.|.+.| +++|.++|+++++.+++|-+|. .|+ ...+--.+.+|.++ .-|.+|+ | +|
T Consensus 182 T~lv~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa---vG~-i~vDV~eln~D~~s~s~HK~ygp~~--iG 251 (428)
T KOG1549|consen 182 TRLVSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA---VGK-IPVDVQELNADFLSISAHKIYGPPG--IG 251 (428)
T ss_pred ceEEEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh---cCC-ccccHHHcCchheeeecccccCCCc--ce
Confidence 999999999999999999 9999999999999999999994 222 12222345667765 4599984 4 99
Q ss_pred EEEecH
Q 011959 324 AYGGRR 329 (474)
Q Consensus 324 ~~~~~~ 329 (474)
++.+++
T Consensus 252 aLYvr~ 257 (428)
T KOG1549|consen 252 ALYVRR 257 (428)
T ss_pred EEEEcc
Confidence 998886
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-12 Score=130.98 Aligned_cols=309 Identities=14% Similarity=-0.006 Sum_probs=172.3
Q ss_pred CHH-HHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCC--CCeEEEeC-CHHHHHHHHHHHhHhhcCCcEEEEEeCCC
Q 011959 117 DDQ-VLAALGETMKKGTSFG-APCLLENVLAEMVISAVPS--IEMVRFVN-SGTEACMGVLRLARAFTGRERIIKFEGCY 191 (474)
Q Consensus 117 ~p~-v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~~--~~~v~~~~-sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (474)
+|+ |++|+.+......+.+ ...+...+..+.+++.+.. .++|+|+. |||++++.++... +.+++..++. .+.
T Consensus 24 ~~~~v~~a~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l--~~~~~~~vi~-~g~ 100 (378)
T PRK03080 24 RPGWQLEALADALLGRSHRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSL--LGARRVDHLA-WES 100 (378)
T ss_pred ChHHHHHHHHhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhc--CCCCcceEEE-eCH
Confidence 577 8888876543211111 1245556777778877752 34788875 9999999999842 2222333333 456
Q ss_pred CCCchhHHH--hcCC-CCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHH
Q 011959 192 HGHADPFLV--KAGS-GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 268 (474)
Q Consensus 192 hg~~~~~~~--~~g~-~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (474)
|+....... ..|. .+..+..+ ++. .-|+++ ++. ++.|.+..+.+.+|.+.|
T Consensus 101 f~~~~~~~~~~~~g~~~v~~~~~~--~g~------------~~d~~~----i~~----~~~V~~~h~~t~tG~~~p---- 154 (378)
T PRK03080 101 FGSKWATDVVKQLKLEDPRVLEAD--YGS------------LPDLSA----VDF----DRDVVFTWNGTTTGVRVP---- 154 (378)
T ss_pred HHHHHHHHHHhhcCCCCceEeccC--CCC------------CCCHhh----cCC----CCCEEEEecCCccceecc----
Confidence 665333211 1232 22211111 110 004444 221 344777777788999999
Q ss_pred HHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceee--hhhhcCCCcceEEEEecHHHHHhhcCCCC------
Q 011959 269 LNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAPAGP------ 340 (474)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~~i~~~~~~~~~------ 340 (474)
+++|.+ ++||+++|+|-+|+ + .......+ . .|+++ ..|+|++...+|+++.+++.++.+.+...
T Consensus 155 i~~I~~--~~~g~~~vVDa~qs-~-G~~pidv~--~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~~ 226 (378)
T PRK03080 155 VARWIG--ADREGLTICDATSA-A-FALPLDWS--K--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIPK 226 (378)
T ss_pred chhhcc--ccCCCeEEEecccc-c-ccCCCCHH--H--CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCch
Confidence 878888 78999999999995 1 01111122 1 37664 56999754459999999999887654210
Q ss_pred -------------cccccCCCCC-hHHHHHHHHHHHHhcCC-C---HHHHHHHHHHHHHHHHHHHhhhcCCeeEEee-ec
Q 011959 341 -------------MYQAGTLSGN-PLAMTAGIHTLKRLKEP-G---TYEYLNKITGELTQGIIDAGKKAGHAICGGY-IS 401 (474)
Q Consensus 341 -------------~~~~~t~~~~-~~~~aaa~aal~~~~~~-~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g 401 (474)
.+..+|++.+ ..+..+..++|+.+.+. + ..++.+++.+++++.|+++..-......-.. .+
T Consensus 227 ~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~ 306 (378)
T PRK03080 227 FFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSN 306 (378)
T ss_pred hheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCc
Confidence 0112233333 33445556788887653 3 3345555555666666544210000000011 12
Q ss_pred eeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.++.+.+.+ .+......+...++++|+++..++ ...+|++ ...|++||++++++|++++++
T Consensus 307 ~i~~~~~~~-----------~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 373 (378)
T PRK03080 307 TSVTLDFVD-----------AQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFER 373 (378)
T ss_pred cEEEEEcCC-----------chHHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 334443321 000111345666777888876543 2457775 567999999999999998765
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-12 Score=139.23 Aligned_cols=304 Identities=14% Similarity=0.151 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeCCHH----HHHHHHHHHhHhhcC--CcEEEEEeCCCCCCchhHHHhcCCCCccCCCC
Q 011959 139 LLENVLAEMVISAVPSIEMVRFVNSGT----EACMGVLRLARAFTG--RERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212 (474)
Q Consensus 139 ~~~~~la~~l~~~~~~~~~v~~~~sGs----eA~~~al~~ar~~~~--~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~ 212 (474)
+...++.++|++++ +.+.|.|+++++ +|+..+++....-.| ++++|+...+-||.....+...|..+..++..
T Consensus 568 ~~~~~~r~~la~i~-g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d 646 (993)
T PLN02414 568 EMFEDLGDLLCEIT-GFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVVVGTD 646 (993)
T ss_pred HHHHHHHHHHHHHh-CCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCEEEEeccC
Confidence 44568888888888 679999998777 788888874321111 12367777788998777776655544332221
Q ss_pred CCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011959 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (474)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (474)
..|.. |+++|+++++.+.+++++|++...++.+|...+ +++|.++|+++|+++++|-++.
T Consensus 647 -~~G~v-------------Dle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~vDgAq~-- 706 (993)
T PLN02414 647 -AKGNI-------------NIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYMDGANM-- 706 (993)
T ss_pred -CCCCc-------------CHHHHHHHHhccCCCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEEEecCH--
Confidence 11211 899999999876567899999888888998888 9999999999999999999993
Q ss_pred ccCCCccccccCCCCceeeh--hhhcC-----CCcceEEEEecHHHHHhhcCCC--C----c---c--cccCCC----CC
Q 011959 293 RLAYGGAQEYFGVTPDLTTL--GKIIG-----GGLPVGAYGGRRDIMEMVAPAG--P----M---Y--QAGTLS----GN 350 (474)
Q Consensus 293 r~g~~~~~~~~g~~pdi~t~--sK~l~-----~G~~iG~~~~~~~i~~~~~~~~--~----~---~--~~~t~~----~~ 350 (474)
.+......-.....|++++ .|+|+ ||-.+|.+.++++++..+-... . . . ..+|.+ ++
T Consensus 707 -~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~ 785 (993)
T PLN02414 707 -NAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGS 785 (993)
T ss_pred -HhccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhh
Confidence 1110111111233577754 68776 3345999999988776553110 0 0 0 012322 33
Q ss_pred hHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHH
Q 011959 351 PLAMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 427 (474)
Q Consensus 351 ~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~ 427 (474)
.+.+.++...++.+-.+++ .++...+..|++++|.+. +++... ...|. +.-+|.-+- ..+. .......
T Consensus 786 al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~---~~~~~~-~~~~~-~~hEfv~~~-~~l~---~~~g~~~ 856 (993)
T PLN02414 786 ALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGH---YPVLFR-GKNGT-CAHEFIIDL-RPFK---NTAGIEP 856 (993)
T ss_pred HHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhh---CCcccc-CCCCC-eeeeEEEec-cccc---cccCCCH
Confidence 3444455555555544555 666777888999988763 232211 11121 111221100 0000 0001122
Q ss_pred HHHHHHHHHCCeEecccC---CcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 428 ARFYRGMLEEGVYFAPSQ---FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 428 ~~~~~~l~~~Gv~v~~~~---~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
..+.++|++.|+...... .+.+++ .-..|++|||+++++|..+.++
T Consensus 857 ~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e 907 (993)
T PLN02414 857 EDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREE 907 (993)
T ss_pred HHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence 668889999998754322 223444 4567999999999999887654
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.5e-13 Score=132.20 Aligned_cols=213 Identities=16% Similarity=0.117 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++...+|.+.++++. +.+..++++||+.|+..++. ....+++||+.++.|.+..........
T Consensus 48 ~~p~~~~Le~~lA~l~-g~~~~~~~~sG~aai~~~~~---~l~~Gd~Viv~~~~y~~~~~~~~~~~~------------- 110 (377)
T PRK07671 48 GNPTRAALEELIAVLE-GGHAGFAFGSGMAAITAVMM---LFSSGDHVILTDDVYGGTYRVMTKVLN------------- 110 (377)
T ss_pred CChHHHHHHHHHHHHh-CCCceEEeCCHHHHHHHHHH---HhCCCCEEEECCCccchHHHHHHHHHh-------------
Confidence 4566778888888887 44567788889998877654 345568899988888664432221100
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (474)
..+.++..++..|++++++.++. ++++|++|.++|++|.+.+ +++|.++|+++|+++|+||+|.......
T Consensus 111 ---~~G~~v~~v~~~d~~~l~~ai~~---~tklV~le~P~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~~~~~~ 180 (377)
T PRK07671 111 ---RFGIEHTFVDTSNLEEVEEAIRP---NTKAIYVETPTNPLLKITD----IKKISTIAKEKGLLTIVDNTFMTPYWQS 180 (377)
T ss_pred ---cCCeEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCCccccCC
Confidence 01113444555689999998863 5789999888888898887 9999999999999999999995321111
Q ss_pred CccccccCCCCcee--ehhhhcCC-C-cceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 297 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 297 ~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
. .....|++ +++|.++| + .-.|++++ ++++++.+.. .........+|..+..++..++.+ ...++
T Consensus 181 p-----~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~---~~~~~g~~~~~~~a~l~~~~l~tl--~~R~~ 250 (377)
T PRK07671 181 P-----ISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHF---VQNSTGGILGPQDSWLLLRGLKTL--GIRME 250 (377)
T ss_pred h-----hhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHH---HHHhhcCCCCHHHHHHHHcCcChH--HHHHH
Confidence 1 12234665 68999984 2 33455555 5677776652 111112234565555544443332 23455
Q ss_pred HHHHHHHHHHHHHHH
Q 011959 372 YLNKITGELTQGIID 386 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~ 386 (474)
+..++...+.+.|++
T Consensus 251 ~~~~na~~la~~L~~ 265 (377)
T PRK07671 251 EHETNSRAIAEFLNN 265 (377)
T ss_pred HHHHHHHHHHHHHHc
Confidence 556666666666654
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-12 Score=126.42 Aligned_cols=341 Identities=14% Similarity=0.080 Sum_probs=181.9
Q ss_pred CEEEeccCChhhccCCCCCHHHHHH-HHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAA-LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA 177 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a-~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~ 177 (474)
..|||+.+-.++ +.+.++ +.+.+.-...|+. ++...+|.+.+++++ +.+.+++++||+.|...+.. .
T Consensus 38 ~v~iDLltDsgT-------~aMs~~q~a~~~~GDe~yag-~~s~~~lE~~va~~~-G~~~av~v~sGT~Al~ll~~---l 105 (450)
T TIGR02618 38 DVYIDLLTDSGT-------NAMSDKQWAGLMMGDEAYAG-SRNFYHLERTVRELY-GFKYVVPTHQGRGAENLLSQ---I 105 (450)
T ss_pred ceEEEcccCCCc-------HHHHHHHHHHhhhcchhhcC-CCcHHHHHHHHHHHH-CCCeEEEcCCHHHHHHHHHH---h
Confidence 468898876443 566666 4443322122332 233356666666666 78899999999999887543 4
Q ss_pred hcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC--C-CHHHHHHHHhcC-CCCeEEEEEc
Q 011959 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF--N-DVSALENLFENN-KGEIAAIILE 253 (474)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~--~-d~~~le~~l~~~-~~~~a~vi~e 253 (474)
..++++.| ..+.|...+...+...|............+. ....|+ | |++.|++.|+.. .+.++.|.++
T Consensus 106 ~l~pGDeV-psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~-------~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e 177 (450)
T TIGR02618 106 AIKPGDYV-PGNMYFTTTRYHQEKNGATFVDIIIDEAHDA-------QLNIPFKGNVDLKKLQKLIDEVGADKIPYICLA 177 (450)
T ss_pred CCCCcCEE-CCceeHHHHHHHHHhCCeEEEeeeccccccc-------ccCCCCCCCcCHHHHHHHhccccCcccCceEEE
Confidence 44554544 3333334333334444441111100000000 000111 1 899999999853 2345566665
Q ss_pred cccCC-CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCcc----ccccCC-----------CCceeehhhhcC
Q 011959 254 PVVGN-SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA----QEYFGV-----------TPDLTTLGKIIG 317 (474)
Q Consensus 254 p~~~~-~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~----~~~~g~-----------~pdi~t~sK~l~ 317 (474)
-..|. ||..++..+ +++|+++|++||+.||.|-++.- ..+ .+. ..+.+. .-|. +++|+.-
T Consensus 178 ~t~N~~GG~pvs~~~-l~~I~elA~~~Gl~vi~DaAR~~-gNA-~~I~~re~g~~~~~i~ei~~e~~~~aD~-~~~S~~K 253 (450)
T TIGR02618 178 VTVNLAGGQPVSMAN-MREVRELCEAHGIKVFYDATRCV-ENA-YFIKEREQGYEDKSIAEILKEMMSYADG-CTMSGKK 253 (450)
T ss_pred EecccCCCeeCCHHH-HHHHHHHHHHcCCEEEEEccchh-hCh-hhhhcccccccCCCHHHHHHHHhccCcE-EEEeecc
Confidence 55554 566555444 99999999999999999998841 000 000 001111 2344 4444443
Q ss_pred -CCcceEEEEe--cHHHHHhhcCCCCcc-cccCCCCC-hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 318 -GGLPVGAYGG--RRDIMEMVAPAGPMY-QAGTLSGN-PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 318 -~G~~iG~~~~--~~~i~~~~~~~~~~~-~~~t~~~~-~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
+|.|+|.+++ ++++++.++.....+ .+-|+++- .-.+.|...+|+...+..+.++.....++|.+.|.+. +
T Consensus 254 d~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~----G 329 (450)
T TIGR02618 254 DCLVNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAA----G 329 (450)
T ss_pred CCCCCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHC----C
Confidence 3457777754 778888776432222 22244441 1233344445655444566667677788888888876 4
Q ss_pred CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEe---ccc---C-----------CcceEE---
Q 011959 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYF---APS---Q-----------FEAGFT--- 451 (474)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v---~~~---~-----------~~~~~~--- 451 (474)
++...+..|+.+.++...- ..++....-|. ..++-.|. +-||-- ... . ...+|+
T Consensus 330 vpv~~p~ggh~V~vda~~~-lph~~~~~~p~----~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaip 404 (450)
T TIGR02618 330 VPIVEPVGGHAVFLDARRF-LPHIPQDQFPA----QSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIP 404 (450)
T ss_pred CcccCCCCcceEEEEhHHh-CCCCChhhChH----HHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccc
Confidence 4433355667777665431 01111111122 33433333 445421 111 0 012343
Q ss_pred ecCCcHHHHHHHHHHHHHHHh
Q 011959 452 SLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 452 ~~~~t~e~i~~~l~~l~~~~~ 472 (474)
.-..|.+++|...+++..+.+
T Consensus 405 rr~yt~~h~~~v~~~~~~~~~ 425 (450)
T TIGR02618 405 RRVYTYAHMDVVADGIIKLYK 425 (450)
T ss_pred cccccHhHHHHHHHHHHHHHh
Confidence 246689999999999988765
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.7e-13 Score=132.13 Aligned_cols=168 Identities=17% Similarity=0.158 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++...+|.++++++. +.+..++++||+.|+.+++. .+..+++||+.++.|++.......... ..+
T Consensus 48 ~~p~~~~Le~~la~l~-g~~~al~~~SG~~Al~~~l~---~l~pGd~Vi~~~~~y~~t~~~~~~~~~----------~~g 113 (380)
T PRK06176 48 GNPTRFALEELIADLE-GGVKGFAFASGLAGIHAVFS---LFQSGDHVLLGDDVYGGTFRLFDKVLV----------KNG 113 (380)
T ss_pred CChhHHHHHHHHHHHh-CCCCEEEECCHHHHHHHHHH---HcCCCCEEEEcCCChhHHHHHHHHHHH----------hcC
Confidence 4455677888888877 45667888999999987665 345678888888888664322211100 011
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (474)
.++..++..|++++++.++. ++++|++|.+.|++|.+.+ +++|.++|++||++||+|++|.....+.
T Consensus 114 ------i~v~~vd~~d~e~l~~ai~~---~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~~~~~ 180 (380)
T PRK06176 114 ------LSCTIIDTSDLSQIKKAIKP---NTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIVDNTFATPYYQN 180 (380)
T ss_pred ------eEEEEcCCCCHHHHHHhcCc---CceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEECCccccccCC
Confidence 12344455589999988863 6789999988888999888 9999999999999999999996321111
Q ss_pred CccccccCCCCcee--ehhhhcCC-C-cceEEEEec-HHHHHhhc
Q 011959 297 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVA 336 (474)
Q Consensus 297 ~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~-~~i~~~~~ 336 (474)
. .+...|++ +++|.++| | .-.|+++++ +++.+.++
T Consensus 181 p-----~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~ 220 (380)
T PRK06176 181 P-----LLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIA 220 (380)
T ss_pred c-----cccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHH
Confidence 1 12334665 57799985 4 335556664 56655554
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-12 Score=128.23 Aligned_cols=236 Identities=13% Similarity=0.053 Sum_probs=152.2
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCC
Q 011959 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~ 217 (474)
++....|+++|+++- +.+.+++++||+.|+.+++.. .+..++.||+....|.+.....-.... ..|+
T Consensus 61 nPt~~~le~~la~LE-g~~~a~~~~SGmaAi~~~~~~--ll~~GD~Vv~~~~~Yg~t~~l~~~~l~----------~~Gi 127 (395)
T PRK08114 61 TLTHFSLQEAMCELE-GGAGCALYPCGAAAVANAILA--FVEQGDHVLMTGTAYEPTQDFCSKILS----------KLGV 127 (395)
T ss_pred ChhHHHHHHHHHHHh-CCCeEEEEhHHHHHHHHHHHH--HcCCCCEEEEeCCCcHHHHHHHHHHHH----------hcCc
Confidence 455677888888776 567888999999999998873 245567788777777664433211100 0111
Q ss_pred CCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC--CEEEEeccccCcccC
Q 011959 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEVMTGFRLA 295 (474)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g--~llI~DEv~~g~r~g 295 (474)
++..++..|.+.+++.++. ++++|++|.+.|+.|.+.+ +++|+++|+++| +++|+|.++. .+
T Consensus 128 ------~v~~vd~~d~~~l~~~l~~---~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a---~p 191 (395)
T PRK08114 128 ------TTTWFDPLIGADIAKLIQP---NTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA---AG 191 (395)
T ss_pred ------EEEEECCCCHHHHHHhcCC---CceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc---cc
Confidence 3555556689999999863 6899999999999999999 999999999985 9999999994 12
Q ss_pred CCccccccCCCCcee--ehhhhcCC-C-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
.. +.-.....|++ +.+|.++| | .-.|.++.++++.+.+... ....+ ...+|..+...+..|+.+ +-..+
T Consensus 192 ~~--~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~--~~~~G-~~~~p~~a~l~~rgl~TL--~lR~~ 264 (395)
T PRK08114 192 VL--FKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLREN--SYLMG-QMVDADTAYMTSRGLRTL--GVRLR 264 (395)
T ss_pred cc--cCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHH--HHhcc-CCCCHHHHHHHHcCCCcH--HHHHH
Confidence 12 22233345665 67899986 3 6677777788776655421 11112 244566655544444322 23445
Q ss_pred HHHHHHHHHHHHHHHHhh----hcCC-e---------eEEeeeceeEEEEEe
Q 011959 372 YLNKITGELTQGIIDAGK----KAGH-A---------ICGGYISGMFGFFFT 409 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~----~~~~-~---------~~v~~~g~~~~i~~~ 409 (474)
+..++...+.+.|++.-. .||. . ....+.|.|+.|++.
T Consensus 265 ~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~ 316 (395)
T PRK08114 265 QHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLK 316 (395)
T ss_pred HHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEec
Confidence 666667777777664310 0110 0 012367889999985
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.2e-13 Score=118.77 Aligned_cols=164 Identities=26% Similarity=0.230 Sum_probs=109.7
Q ss_pred HHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCC
Q 011959 142 NVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKG 220 (474)
Q Consensus 142 ~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~ 220 (474)
.++.+.+++.++ +.+++++++||++|+..+++.++ ..+++|++.++.|++.........|..+..++.......
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--- 77 (170)
T cd01494 3 EELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL--GPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYG--- 77 (170)
T ss_pred HHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhC--CCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCCcc---
Confidence 456677777763 56789999999999999999532 236789999989988653333333432222111110000
Q ss_pred CCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc
Q 011959 221 ATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 299 (474)
Q Consensus 221 ~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~ 299 (474)
..+.+.+++... .++++++++++.++++|...+ +++|.++|+++|+++|+||+|.++ .....
T Consensus 78 ---------~~~~~~~~~~~~--~~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~~-- 140 (170)
T cd01494 78 ---------GLDVAILEELKA--KPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPG-- 140 (170)
T ss_pred ---------chhhhhhhhccc--cCceEEEEEecCcCCCCeEcC----HHHHHHHHHHcCCEEEEecccccccccccc--
Confidence 002224433322 357899999999999998888 788999999999999999999877 43221
Q ss_pred ccccCCCCceeehh--hhcCCCcceEEEEec
Q 011959 300 QEYFGVTPDLTTLG--KIIGGGLPVGAYGGR 328 (474)
Q Consensus 300 ~~~~g~~pdi~t~s--K~l~~G~~iG~~~~~ 328 (474)
.......+|+++.| |.+++ .++|+++++
T Consensus 141 ~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 141 VLIPEGGADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred cccccccCCEEEEEcccccCC-CceEEEEeC
Confidence 12223457887655 99987 789998764
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-12 Score=130.61 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCC
Q 011959 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~ 217 (474)
++...+|.+.++++. +.+..++++||+.|+..++.. ....++.||+....|.+.. ..+...- . ..|
T Consensus 68 ~p~~~~Le~~lA~l~-g~~~av~~sSG~aAi~~al~a--ll~~Gd~Vv~~~~~y~~t~-~~~~~~l--------~-~~G- 133 (436)
T PRK07812 68 NPTQDVVEQRIAALE-GGVAALLLASGQAAETFAILN--LAGAGDHIVSSPRLYGGTY-NLFHYTL--------P-KLG- 133 (436)
T ss_pred CchHHHHHHHHHHHh-CCCeEEEEccHHHHHHHHHHH--HhCCCCEEEEeCCcchHHH-HHHHHHh--------h-cCe-
Confidence 455678888888887 556789999999999999973 2345677777766665432 2211100 0 011
Q ss_pred CCCCCCceEEcc-CCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccC
Q 011959 218 PKGATYETLTAP-FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLA 295 (474)
Q Consensus 218 ~~~~~~~~~~~~-~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g 295 (474)
..+..++ ..|++++++.++ +++++|++|.+.|+.|.+.+ +++|.++|++||+++|+|+++. +..
T Consensus 134 -----i~v~~vdd~~d~e~l~~ai~---~~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a~~~~-- 199 (436)
T PRK07812 134 -----IEVSFVEDPDDLDAWRAAVR---PNTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIATPYL-- 199 (436)
T ss_pred -----EEEEEECCCCCHHHHHHhCC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccccc--
Confidence 1233332 347888888876 36789999999999999999 9999999999999999999984 221
Q ss_pred CCccccccCCCCcee--ehhhhcCC-CcceEEEEe
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGG 327 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G~~iG~~~~ 327 (474)
........|++ +++|.++| |--+|+++.
T Consensus 200 ----~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv 230 (436)
T PRK07812 200 ----IRPLEHGADIVVHSATKYLGGHGTAIAGVIV 230 (436)
T ss_pred ----CCchhcCCCEEEEecccccCCCCCeEEEEEE
Confidence 11112235654 78999984 434555544
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-12 Score=130.37 Aligned_cols=313 Identities=12% Similarity=0.054 Sum_probs=181.0
Q ss_pred CCHHHHHHHHHHHhhCCCCC--------eEEEeCCHHHHHHHHHHHhHhhc-------C-CcEEEEEeCCCCCCchhHHH
Q 011959 137 PCLLENVLAEMVISAVPSIE--------MVRFVNSGTEACMGVLRLARAFT-------G-RERIIKFEGCYHGHADPFLV 200 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~--------~v~~~~sGseA~~~al~~ar~~~-------~-~~~ii~~~~~yhg~~~~~~~ 200 (474)
..+++.++.+++++.++-++ .-++++|||+||..||..||... + ++-+|+....-|.+..-++.
T Consensus 120 ~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~ 199 (490)
T PLN02880 120 ATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQ 199 (490)
T ss_pred cHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHH
Confidence 45788999999999885222 36789999999999999998642 1 23355555556887777777
Q ss_pred hcCCCC---ccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhc---CCCCeEEEEEccccCCCCcccCCHHHHHHHHH
Q 011959 201 KAGSGV---ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (474)
Q Consensus 201 ~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (474)
..|.+. ..++...... ..+ |+++|++.|++ .+..+.+|+..-...++|.+.| +++|.+
T Consensus 200 ~lGlg~~~v~~Vp~d~~~~---------~~m---d~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp----l~eI~~ 263 (490)
T PLN02880 200 IAGIHPENCRLLKTDSSTN---------YAL---APELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP----LLELGK 263 (490)
T ss_pred HcCCCHHHEEEeecCCCcC---------CcC---CHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc----HHHHHH
Confidence 766542 2211110000 011 89999998864 2223556666666667899999 999999
Q ss_pred HHHHhCCEEEEeccccCc-ccCCCccccccCC-CCceee--hhhhcCCCcceEEEEecHH--HHHhhcCCCCcc-c----
Q 011959 275 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD--IMEMVAPAGPMY-Q---- 343 (474)
Q Consensus 275 l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~t--~sK~l~~G~~iG~~~~~~~--i~~~~~~~~~~~-~---- 343 (474)
+|++||+++++|-+|.|+ ..-..+.....|+ ..|.++ +-|.+...+..|.++.+.. +.+.+.....+. .
T Consensus 264 i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~ 343 (490)
T PLN02880 264 IAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQ 343 (490)
T ss_pred HHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCcccc
Confidence 999999999999999876 3221111112343 467665 6799987788999987642 223332110000 0
Q ss_pred ------ccCC---CCChHHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecC
Q 011959 344 ------AGTL---SGNPLAMTAGIHTLKRLKEPGTYEYLN---KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411 (474)
Q Consensus 344 ------~~t~---~~~~~~~aaa~aal~~~~~~~~~~~~~---~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~ 411 (474)
...+ .+..+.......+|+.+-.+++.++++ ++.+++.+.|++.. ++..-.+....++.|.+...
T Consensus 344 ~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~---~~el~~~~~~~iv~Fr~~~~ 420 (490)
T PLN02880 344 ANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDS---RFEVVTPRIFSLVCFRLVPP 420 (490)
T ss_pred ccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCC---CEEEecCCceEEEEEEEeCC
Confidence 0000 111111223334455554456666665 66777766665431 12111222333444444321
Q ss_pred CCcCcccccccchHHHHHHHHHHHHCC-eEeccc---CCcceEEe---cCCcHHHHHHHHHHHHHHHhh
Q 011959 412 PVYNFEDAKKSETTKFARFYRGMLEEG-VYFAPS---QFEAGFTS---LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~---~~~~~~~~---~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.. + .........++.+.|.+.| +++... +...+|++ ...|++|++.+++.|.+..++
T Consensus 421 ~~-~----~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~ 484 (490)
T PLN02880 421 KN-N----EDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASK 484 (490)
T ss_pred CC-C----hhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 00 0 0001223345667777666 444433 22345553 566789999999999887654
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.3e-12 Score=126.88 Aligned_cols=159 Identities=19% Similarity=0.166 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++...+|.+.++++.+ .+.+++++||++|+..++... ...+++||+....|++.......... ..|
T Consensus 62 ~~p~~~~le~~lA~l~g-~~~av~~sSGt~Al~~al~~l--l~~Gd~Vi~~~~~y~~t~~~~~~~l~----------~~G 128 (433)
T PRK08134 62 SNPTVAVLEERVAALEG-GVGAIATASGQAALHLAIATL--MGAGSHIVASSALYGGSHNLLHYTLR----------RFG 128 (433)
T ss_pred cChHHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCccHHHHHHHHHHHh----------hCC
Confidence 34557788888888874 456899999999999998742 44567888887777764322211000 011
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g 295 (474)
.++..++.+|++++++.|+. ++++|+++.+.|++|.+.+ +++|.++|++||+++|+|.+|. ++..
T Consensus 129 ------i~v~~vd~~d~~~l~~~i~~---~TklV~~e~~~np~g~v~D----i~~I~~la~~~gi~livD~t~a~~~~~- 194 (433)
T PRK08134 129 ------IETTFVKPGDIDGWRAAIRP---NTRLLFGETLGNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFTTPYLL- 194 (433)
T ss_pred ------eEEEEECCCCHHHHHHhcCC---CCeEEEEECCCcccCcccC----HHHHHHHHHHcCCEEEEECCCcccccC-
Confidence 13455555689999999873 6789999998888999999 9999999999999999999994 3211
Q ss_pred CCccccccCCCCcee--ehhhhcCC-CcceEEEEe
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGG 327 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G~~iG~~~~ 327 (474)
.......|++ +..|.++| |-.+|+++.
T Consensus 195 -----~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 195 -----RPFEHGADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred -----CchhcCCCEEEeccccccCCCCCceEEEEE
Confidence 1112334665 56798885 555666644
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-11 Score=120.85 Aligned_cols=343 Identities=15% Similarity=0.060 Sum_probs=176.3
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar 176 (474)
...|||+.+-.++ +.+.++....+..+. .|+. ++-..+|.+.+++++ +.+.+++++||+.|+..+..
T Consensus 44 ~~v~IDLlSDS~T-------~aMs~~q~a~~~vGDd~Yag-d~s~~~LE~~vAe~l-G~e~aV~v~sGTaAl~ll~~--- 111 (460)
T PRK13237 44 EDVYIDLLTDSGT-------NAMSDRQWAGMMIGDEAYAG-SRNFYHLEETVQEYY-GFKHVVPTHQGRGAENLLSR--- 111 (460)
T ss_pred CcEEEECcccCCc-------hhccHHHHHHHhhcchhhcC-CCcHHHHHHHHHHHH-CCCeEEEeCCHHHHHHHHHH---
Confidence 3467898877543 344444333333332 2332 222345555555555 78899999999999998654
Q ss_pred hhcCCcEEEEEeCCCCCCchhH-HHhcCCCCccCCCCCCCCC-CCCCCCceEEccCC-CHHHHHHHHhcC-CCCeEEEEE
Q 011959 177 AFTGRERIIKFEGCYHGHADPF-LVKAGSGVATLGLPDSPGV-PKGATYETLTAPFN-DVSALENLFENN-KGEIAAIIL 252 (474)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~-~~~~g~~~~~~~~~~~~g~-~~~~~~~~~~~~~~-d~~~le~~l~~~-~~~~a~vi~ 252 (474)
...+++++| .+.+|-.+..+ +...|...... ...... +. ....+.+| |++.|++.|+++ +.+++.+.+
T Consensus 112 l~v~pGd~V--p~n~~f~Tt~ahI~~~Ga~fvDi--~~d~a~~~~----~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a 183 (460)
T PRK13237 112 IAIKPGQYV--PGNMYFTTTRYHQELNGGIFVDI--IIDEAHDAQ----SDHPFKGNVDLDKLQALIDEVGAENIAYICL 183 (460)
T ss_pred hCCCCcCEE--CCccchHhhHHHHHhCCcEEEee--ecccccccc----cCCCCCCCcCHHHHHHHhccccCCccCceEE
Confidence 334444444 33334333333 44444311100 000000 00 00011122 899999999853 334555554
Q ss_pred ccccCC-CCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C---c---ccCCCcccc------ccCCCCceee--hhhhc
Q 011959 253 EPVVGN-SGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G---F---RLAYGGAQE------YFGVTPDLTT--LGKII 316 (474)
Q Consensus 253 ep~~~~-~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g---~---r~g~~~~~~------~~g~~pdi~t--~sK~l 316 (474)
+-..|. ||...+..+ +++|+++|++||+.||.|-++. | | |........ ..+-.-|++| +.|.+
T Consensus 184 ~itvn~~GGqpvs~~~-m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~ 262 (460)
T PRK13237 184 AVTVNLAGGQPVSMAN-MRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDC 262 (460)
T ss_pred EEecccCCCeeCCHHh-HHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCC
Confidence 443444 465554444 9999999999999999999983 4 3 111110000 0111346665 45766
Q ss_pred CCCcce-EEEEe-cHHHHHhhcCCCCcc-cccCCCCChH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 317 GGGLPV-GAYGG-RRDIMEMVAPAGPMY-QAGTLSGNPL-AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 317 ~~G~~i-G~~~~-~~~i~~~~~~~~~~~-~~~t~~~~~~-~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
+. ++ |+++. ++++.+.++.....+ .+.||++-.- -+.|....|+...+.++.++..+..++|.+.|.+. +
T Consensus 263 ~~--~~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~----G 336 (460)
T PRK13237 263 LV--NIGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLAA----G 336 (460)
T ss_pred CC--CCceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHHC----C
Confidence 64 44 55544 567777776432222 2335554322 22232234444444566666667778888877764 5
Q ss_pred CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEe-------ccc---C-------CcceEE---
Q 011959 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYF-------APS---Q-------FEAGFT--- 451 (474)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v-------~~~---~-------~~~~~~--- 451 (474)
++...+..|.-+.++...- ..++....-|. ..++-.|. +-||-- ... + ...+|+
T Consensus 337 vpv~~p~ggH~v~vda~~~-lph~~~~~~p~----~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaip 411 (460)
T PRK13237 337 VPIVEPVGGHAVFLDARRF-LPHLPQDQFPA----QALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIP 411 (460)
T ss_pred CceecCCCceEEEEEhHHh-CCCCCcccChH----HHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccc
Confidence 5544455555445543220 01111111122 33433333 445422 111 0 012344
Q ss_pred ecCCcHHHHHHHHHHHHHHHh
Q 011959 452 SLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 452 ~~~~t~e~i~~~l~~l~~~~~ 472 (474)
.-..|.+++|...++|..+.+
T Consensus 412 rr~yt~~h~~~v~~~~~~~~~ 432 (460)
T PRK13237 412 RRVYTYAHMDVVADSVIKLYK 432 (460)
T ss_pred cccccHHHHHHHHHHHHHHHH
Confidence 246689999999999988765
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-11 Score=119.84 Aligned_cols=291 Identities=13% Similarity=0.027 Sum_probs=178.5
Q ss_pred CCHHHHHHHHHHHhhCCC-CC--eEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCC
Q 011959 137 PCLLENVLAEMVISAVPS-IE--MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 213 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~-~~--~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~ 213 (474)
..+++.++-+++++.++. .+ .-.+++||||||..|+..||.+..+ .+++....-|-+..-+....|.++..++...
T Consensus 131 s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~-~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~ 209 (470)
T PLN02263 131 SRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPD-GILYASRESHYSVFKAARMYRMECVKVDTLV 209 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCC-cEEEEcCCccHHHHHHHHhcCCcceEeccCC
Confidence 357788999999998862 22 4688999999999999999986543 4666666777777777776666544332211
Q ss_pred CCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCC-----EEEEecc
Q 011959 214 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA-----LLIFDEV 288 (474)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~-----llI~DEv 288 (474)
...+ |+++|++.|.++...+.+|+..-...+.|.+-| +++|.++|++||+ +|.+|-+
T Consensus 210 ~g~m--------------D~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA 271 (470)
T PLN02263 210 SGEI--------------DCADFKAKLLANKDKPAIINVNIGTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGA 271 (470)
T ss_pred CCcC--------------cHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEecc
Confidence 1111 899999988765444556666655556899999 9999999999997 9999999
Q ss_pred ccCc-cc--CCCccccccCCCCceee--hhhhcCCCcceEEEEecHHHHHhhcCCCCccc--ccCCCCCh--HHHHHHHH
Q 011959 289 MTGF-RL--AYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQ--AGTLSGNP--LAMTAGIH 359 (474)
Q Consensus 289 ~~g~-r~--g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~--~~t~~~~~--~~~aaa~a 359 (474)
+.|+ -. ...-.++ +....|-++ .-|.++..++.|.++.+++.++.+.....+.. -.|..++- ........
T Consensus 272 ~GG~~lPf~~~~~~~d-f~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~ 350 (470)
T PLN02263 272 LFGLMMPFVKRAPKVT-FKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWY 350 (470)
T ss_pred chhhHhhhcccccccC-CCcCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHH
Confidence 9887 31 1100011 111245554 45988888899999998776655532111100 01222221 22344455
Q ss_pred HHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH
Q 011959 360 TLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 436 (474)
Q Consensus 360 al~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 436 (474)
+|+.+-.+ +..++..++.+++.++|++. ++........+.+. |.. |. ..+..
T Consensus 351 ~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~----g~~~~~~p~s~~V~--f~~-----------p~--------~~~~~ 405 (470)
T PLN02263 351 TLNRKGYRGFQKEVQKCLRNAHYLKDRLREA----GISAMLNELSSTVV--FER-----------PK--------DEEFV 405 (470)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEeCCCceEEE--Eec-----------Cc--------hHHhh
Confidence 66655443 44455556667777777664 33322233333332 221 11 11134
Q ss_pred CCeEecccCCc-ceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 437 EGVYFAPSQFE-AGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 437 ~Gv~v~~~~~~-~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
+|-.+...+.. ++.+...++.+.+|++++-|++..+
T Consensus 406 ~gW~L~~~~~~~Hivvmphv~~~~id~fi~DL~~~~~ 442 (470)
T PLN02263 406 RRWQLACQGNIAHVVVMPSVTIEKLDYFLKELVEKRS 442 (470)
T ss_pred cceEEccCCCcEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 66666554322 2333444688999999999988754
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.7e-12 Score=124.67 Aligned_cols=234 Identities=18% Similarity=0.156 Sum_probs=145.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++....|.+.|+++. +.+.++.++||..|+..++.. ....++.||.....|++.....-.... ..|
T Consensus 53 gnPt~~~le~~la~Le-~g~~a~~~~SGmaAi~~~l~~--ll~~Gd~iv~~~~~Y~~t~~~~~~~l~----------~~g 119 (386)
T PF01053_consen 53 GNPTVRALEQRLAALE-GGEDALLFSSGMAAISAALLA--LLKPGDHIVASDDLYGGTYRLLEELLP----------RFG 119 (386)
T ss_dssp C-HHHHHHHHHHHHHH-T-SEEEEESSHHHHHHHHHHH--HS-TTBEEEEESSSSHHHHHHHHHCHH----------HTT
T ss_pred ccccHHHHHHHHHHhh-cccceeeccchHHHHHHHHHh--hcccCCceEecCCccCcchhhhhhhhc----------ccC
Confidence 4566778888888777 557899999999999998874 234468888888888874322221100 011
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC-CEEEEeccccCcccC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGFRLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g-~llI~DEv~~g~r~g 295 (474)
.++..++..|++++++.++. ++++|++|++.|+...+.+ +++|+++|+++| +++|+|.....
T Consensus 120 ------v~v~~~d~~d~~~l~~~l~~---~t~~v~~EspsNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~at---- 182 (386)
T PF01053_consen 120 ------VEVTFVDPTDLEALEAALRP---NTKLVFLESPSNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFAT---- 182 (386)
T ss_dssp ------SEEEEESTTSHHHHHHHHCT---TEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EEEEECTTTH----
T ss_pred ------cEEEEeCchhHHHHHhhccc---cceEEEEEcCCCccccccc----HHHHHHHHHHhCCceEEeeccccc----
Confidence 13555666789999999984 7999999999999888888 999999999998 99999999842
Q ss_pred CCccccccCCCCcee--ehhhhcCC-C-cceEEEEec--HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCH
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR--RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~--~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (474)
+..+.-+....|++ +++|.++| | .-.|.++.+ +++.+.++.. ....+ ...+|..+...+..|+.+ .-.
T Consensus 183 -p~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~--~~~~G-~~~~p~da~ll~rgl~Tl--~~R 256 (386)
T PF01053_consen 183 -PYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREF--RRLLG-ATLSPFDAWLLLRGLRTL--PLR 256 (386)
T ss_dssp -TTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHH--HHHHT--B--HHHHHHHHHHHTTH--HHH
T ss_pred -eeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcch--hhhcC-ccchHHHHHHHhcCCCcH--HHH
Confidence 11122222234655 79999985 3 456777755 4677666521 11111 133455555444444322 334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCeeEE------------------eeeceeEEEEEec
Q 011959 370 YEYLNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFTE 410 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v------------------~~~g~~~~i~~~~ 410 (474)
.++..++...+.+.|++ ++.+..| .+.|.++.|++..
T Consensus 257 ~~~~~~nA~~lA~~L~~----hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~ 311 (386)
T PF01053_consen 257 MERQNENAEALAEFLEE----HPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKG 311 (386)
T ss_dssp HHHHHHHHHHHHHHHHT----STTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHh----CCCCCeEEEcccccccceeeeeecccccCceeEEEecc
Confidence 55666667667666654 3433222 2566789999864
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-11 Score=130.20 Aligned_cols=303 Identities=15% Similarity=0.129 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhc-----CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCC
Q 011959 139 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 213 (474)
Q Consensus 139 ~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~-----~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~ 213 (474)
+...++.++|++.++-...-++.++|+.|..+++..+|.+. +++.+++...+-||.........|..+..++..
T Consensus 530 q~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d- 608 (939)
T TIGR00461 530 ELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVPVNCD- 608 (939)
T ss_pred HHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEEEEeccC-
Confidence 45678999999998522455677889988888887777652 234566667788988776666666543332211
Q ss_pred CCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC-c
Q 011959 214 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-F 292 (474)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g-~ 292 (474)
..|.. |+++|++.++++++++++|++..+++ .|.+.++ +++|.++|+++|.++++|-++.. .
T Consensus 609 ~~G~i-------------Dle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al 671 (939)
T TIGR00461 609 QDGNI-------------DLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPT---IQHACDIVHSFGGQVYLDGANMNAQ 671 (939)
T ss_pred CCCCc-------------CHHHHHHHHhhcCCceEEEEEEeCCc-Cceeccc---HHHHHHHHHHcCCEEEEEecChhhC
Confidence 11211 89999999987666888888866555 4555432 89999999999999999999942 2
Q ss_pred ccCCCccccccCCCCceeeh--hhhcC-----CCcceEEEEecHHHHHhhcCCCCc----------c----cccCCCCCh
Q 011959 293 RLAYGGAQEYFGVTPDLTTL--GKIIG-----GGLPVGAYGGRRDIMEMVAPAGPM----------Y----QAGTLSGNP 351 (474)
Q Consensus 293 r~g~~~~~~~~g~~pdi~t~--sK~l~-----~G~~iG~~~~~~~i~~~~~~~~~~----------~----~~~t~~~~~ 351 (474)
......-....|++++ .|+|+ ||--+|.+.+++++...+-. ... . ..+.+.++.
T Consensus 672 ----~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg-~~v~~t~d~~greq~Iga~s~~~~g~a 746 (939)
T TIGR00461 672 ----VGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPK-HDVVSMITGIGGSKSIGSVSAAPYGSA 746 (939)
T ss_pred ----CCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCC-CcccccccCCCCccccccccccccCcH
Confidence 0001111234588766 59887 55668999999876554431 100 0 111233444
Q ss_pred HHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHH
Q 011959 352 LAMTAGIHTLKRLKEPGT---YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 428 (474)
Q Consensus 352 ~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 428 (474)
+.+..+...|..+-.+++ .+....+.+|+.++|.+. +.+... ...+.+ .-+|.-+- .. .+........
T Consensus 747 ~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~---~~~l~~-~~~~~~-~hEfv~~~-~~---~~~~~g~~~~ 817 (939)
T TIGR00461 747 SILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH---YPILFV-GTLKHV-AHECILDL-RP---LKAKTGIEAI 817 (939)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc---Cccccc-CCCCce-eEEEEEec-cc---hhhhcCCCHH
Confidence 444555556666554433 344455778888888762 222211 011121 12221000 00 0001112347
Q ss_pred HHHHHHHHCCeEecccCCc---ce--EEecCCcHHHHHHHHHHHHHHHhh
Q 011959 429 RFYRGMLEEGVYFAPSQFE---AG--FTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 429 ~~~~~l~~~Gv~v~~~~~~---~~--~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++.++|++.|+......++ .+ ++.-..|++|||++++++.++.++
T Consensus 818 dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e 867 (939)
T TIGR00461 818 DVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEE 867 (939)
T ss_pred HHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 8999999999975433211 22 335677999999999999877554
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-11 Score=123.55 Aligned_cols=312 Identities=10% Similarity=0.006 Sum_probs=177.9
Q ss_pred CCHHHHHHHHHHHhhCCCCC--------eEEEeCCHHHHHHHHHHHhHhhc-------C-CcEEEEEeCCCCCCchhHHH
Q 011959 137 PCLLENVLAEMVISAVPSIE--------MVRFVNSGTEACMGVLRLARAFT-------G-RERIIKFEGCYHGHADPFLV 200 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~--------~v~~~~sGseA~~~al~~ar~~~-------~-~~~ii~~~~~yhg~~~~~~~ 200 (474)
..+++.++.+++++.++-++ .-+|++|||+||..||..||... + ++-+++....-|-+..-++.
T Consensus 168 ~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ 247 (539)
T PLN02590 168 ATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACL 247 (539)
T ss_pred hHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHH
Confidence 35788999999999985222 36789999999999999998742 1 23355555556766666666
Q ss_pred hcCCC---CccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC---CCCeEEEEEccccCCCCcccCCHHHHHHHHH
Q 011959 201 KAGSG---VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (474)
Q Consensus 201 ~~g~~---~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (474)
..|.+ +..++...... ..+ |+++|++.|++. +..+.+|+..--..++|.+-| +++|.+
T Consensus 248 ilGlg~~~vr~Vp~d~~~~---------~~m---d~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp----l~~Ia~ 311 (539)
T PLN02590 248 IGGIHEENIRLLKTDSSTN---------YGM---PPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP----LVPLGN 311 (539)
T ss_pred HcCCCcccEEEEeCCCCCC---------CcC---CHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC----HHHHHH
Confidence 65553 11111110000 011 899999998642 223455555555566899999 999999
Q ss_pred HHHHhCCEEEEeccccCc-ccCCCccccccCC-CCceee--hhhhcCCCcceEEEEecHH--HHHhhcCCCCcc------
Q 011959 275 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD--IMEMVAPAGPMY------ 342 (474)
Q Consensus 275 l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~t--~sK~l~~G~~iG~~~~~~~--i~~~~~~~~~~~------ 342 (474)
+|++||++|++|-+|.|+ ..-.....-..|+ ..|-++ .-|.+...+..|.++.+.. +.+.+.....+.
T Consensus 312 i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~ 391 (539)
T PLN02590 312 IAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSK 391 (539)
T ss_pred HHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccc
Confidence 999999999999999887 3221111112344 246665 5799988888999987753 333332110000
Q ss_pred -----ccc--CC-CCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhcC-CeeEEeeeceeEEEEEec
Q 011959 343 -----QAG--TL-SGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTE 410 (474)
Q Consensus 343 -----~~~--t~-~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~v~~~g~~~~i~~~~ 410 (474)
... +. .+-.+.......+|+.+-.+ +.+++.-++.+++.+.|++. + +..-.+..=.++.|.+..
T Consensus 392 ~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~----~~fel~~~~~l~iVcFr~~~ 467 (539)
T PLN02590 392 KDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQD----PSFEVVTTRYFSLVCFRLAP 467 (539)
T ss_pred cccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCceEEEEEEecC
Confidence 000 01 11233444444556654443 34444555566666665542 2 111111111222222221
Q ss_pred CCCcCcccccccchHHHHHHHHHHHHCCeE-eccc---CCcceEE---ecCCcHHHHHHHHHHHHHHHhh
Q 011959 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVY-FAPS---QFEAGFT---SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~-v~~~---~~~~~~~---~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.... .........++.+.+.+.|.+ +.+. +...+|+ +...++++|+.+++.|.+...+
T Consensus 468 ~~~~-----~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~ 532 (539)
T PLN02590 468 VDGD-----EDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASK 532 (539)
T ss_pred CCCC-----HHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 1000 000123345777888877754 4433 2223454 4567899999999999987654
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.9e-12 Score=135.61 Aligned_cols=300 Identities=17% Similarity=0.182 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHhhCCCCCeE-EEeCCHHHHHHHHHHHhHhhc-----CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCC
Q 011959 139 LLENVLAEMVISAVPSIEMV-RFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212 (474)
Q Consensus 139 ~~~~~la~~l~~~~~~~~~v-~~~~sGseA~~~al~~ar~~~-----~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~ 212 (474)
+...++.++++++++ .+.+ +..|+|+.++.+++..+|.+. .++.+|+...+-|+.....+...|..+..++..
T Consensus 542 ~~i~e~q~~l~eltG-~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d 620 (954)
T PRK05367 542 ELIDQLEAWLAEITG-YDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACD 620 (954)
T ss_pred HHHHHHHHHHHHHHC-CCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCC
Confidence 456788899999884 4444 445678888878787777642 123455566677877766666656544332221
Q ss_pred CCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C
Q 011959 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G 291 (474)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g 291 (474)
. .+. -|+++|++.++++++++++|++......++...+ +++|.++|+++|+++++|.++. +
T Consensus 621 ~-~G~-------------iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~----I~eI~~i~h~~G~~v~VDgA~~~a 682 (954)
T PRK05367 621 E-NGN-------------IDLDDLRAKAEEHADNLAAIMITYPSTHGVFEET----IREICEIVHEHGGQVYLDGANMNA 682 (954)
T ss_pred C-CCC-------------cCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCC----HHHHHHHHHHcCCEEEEECcChhh
Confidence 1 111 1799999999865556777766554444444466 9999999999999999999994 2
Q ss_pred c-ccCCCccccccCCCCceeehh--hhcC-----CCcceEEEEecHHHHHhhcCCC---Cccc--ccCCCCChH----HH
Q 011959 292 F-RLAYGGAQEYFGVTPDLTTLG--KIIG-----GGLPVGAYGGRRDIMEMVAPAG---PMYQ--AGTLSGNPL----AM 354 (474)
Q Consensus 292 ~-r~g~~~~~~~~g~~pdi~t~s--K~l~-----~G~~iG~~~~~~~i~~~~~~~~---~~~~--~~t~~~~~~----~~ 354 (474)
+ ... ....+| .|+++++ |.|+ ||--+|.+.+++.+...+.... .... .++....+. .+
T Consensus 683 l~~l~---~pg~~G--ADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~ 757 (954)
T PRK05367 683 QVGLA---RPGDIG--ADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASIL 757 (954)
T ss_pred ccCCC---ChhhcC--CCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHH
Confidence 1 111 111233 5777655 9885 2345888888876654443210 0000 112222222 12
Q ss_pred HHHHHHHHHhcCCCHHHHHH---HHHHHHHHHHHHHhhhcCCeeEEeeecee--EEEEEecCCCcCcccccccchHHHHH
Q 011959 355 TAGIHTLKRLKEPGTYEYLN---KITGELTQGIIDAGKKAGHAICGGYISGM--FGFFFTEGPVYNFEDAKKSETTKFAR 429 (474)
Q Consensus 355 aaa~aal~~~~~~~~~~~~~---~~~~~l~~~L~~~~~~~~~~~~v~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~~ 429 (474)
..+...+..+-.+++.+..+ .+.+++.++|.+. +++...-++...+ +.+.+.. . ..........
T Consensus 758 ~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~---~~~~~~~~~~~~~~e~i~~~~~--~------~~~~g~~~~d 826 (954)
T PRK05367 758 PISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH---YPVLYTGANGRVAHECILDLRP--L------KESTGITVDD 826 (954)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh---cCccccCCCCCcccceEEEeec--c------cccCCCCHHH
Confidence 22233334343355555555 7888898888764 2221110000000 1122210 0 0000112367
Q ss_pred HHHHHHHCCeEecccC---CcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 430 FYRGMLEEGVYFAPSQ---FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 430 ~~~~l~~~Gv~v~~~~---~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+.++|.+.|+...... .+.+++ .-..|++|||++++++..+.++
T Consensus 827 i~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e 875 (954)
T PRK05367 827 IAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAE 875 (954)
T ss_pred HHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHH
Confidence 8999999998765432 233444 4567999999999999887654
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-11 Score=119.60 Aligned_cols=306 Identities=12% Similarity=0.032 Sum_probs=179.1
Q ss_pred CCHHHHHHHHHHHHhc--CCC-----C-CCC---HHHHHHHHHHHhhCCC--CCeEE-EeCCHHHHHHHHHHHhHhhcCC
Q 011959 116 ADDQVLAALGETMKKG--TSF-----G-APC---LLENVLAEMVISAVPS--IEMVR-FVNSGTEACMGVLRLARAFTGR 181 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~--~~~-----~-~~~---~~~~~la~~l~~~~~~--~~~v~-~~~sGseA~~~al~~ar~~~~~ 181 (474)
-+++|++|+...+.+. ... + ... +...+..+.+++.+.. ..+++ +.+||+.|+|+++.. ....+
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~n--l~~~g 91 (360)
T PRK05355 14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMN--LLGGG 91 (360)
T ss_pred CCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHh--cCCCC
Confidence 4799999999887431 001 1 122 5677888888888862 23454 558899999999984 33445
Q ss_pred cEEEEEeCCCCCCchhHHHhc-CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHH-HHhcCCCCeEEEEEccccCCC
Q 011959 182 ERIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENNKGEIAAIILEPVVGNS 259 (474)
Q Consensus 182 ~~ii~~~~~yhg~~~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~-~l~~~~~~~a~vi~ep~~~~~ 259 (474)
++++....+.+|....-++.. |.. .....+...+. .+..++++ .+++ ++++|.+..+.+.+
T Consensus 92 ~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~-------------~~~~~~~~~~l~~---~~~~V~~th~eTst 154 (360)
T PRK05355 92 KKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGF-------------TYIPPLDEWQLSD---DAAYVHYTSNETID 154 (360)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCC-------------CCCCChhhccCCC---CCCEEEEccCCCcc
Confidence 677777777777655433332 321 11111110111 02233333 4542 56788888888889
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceee--hhhhcCCCcceEEEEecHHHHHhhcC
Q 011959 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAP 337 (474)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~~i~~~~~~ 337 (474)
|.+.++ +.+| ||+++|+|-+++ + .+.....+.+ |+++ ..|.+|. ..+|.+++++++++.+.+
T Consensus 155 Gv~~~~---i~~i------~g~l~vVDavss-~-g~~~idv~~~----d~~~~ssqK~lgP-~Glg~l~~s~~~l~~~~~ 218 (360)
T PRK05355 155 GTEFHE---LPDT------GDVPLVADMSSD-I-LSRPIDVSKF----GLIYAGAQKNIGP-AGLTIVIVREDLLGRALP 218 (360)
T ss_pred eEecCc---cccc------CCCcEEEEcCcc-c-cCccCCHHHc----cEEEEeccccccC-CceEEEEECHHHHhhccc
Confidence 988731 5444 899999999995 1 1112222222 3554 4599962 239999999999888764
Q ss_pred C-CCc-------cccc-CCCCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCeeE-Ee---ee
Q 011959 338 A-GPM-------YQAG-TLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAIC-GG---YI 400 (474)
Q Consensus 338 ~-~~~-------~~~~-t~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~---~~ 400 (474)
. ..+ .... .++.|.....+..++|+.+.+. ...++.+++.+++++.|+++ ++... .. ..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~----~~~~~~~~~~~rs 294 (360)
T PRK05355 219 SIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSS----DFYRNPVAPEDRS 294 (360)
T ss_pred CCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhC----CCcccCCChhhcC
Confidence 1 100 0111 2344556666777889988764 34444555555555555554 32110 00 11
Q ss_pred ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEEec--CCcHHHHHHHHHHHHHHHhh
Q 011959 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSL--AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~~~--~~t~e~i~~~l~~l~~~~~~ 473 (474)
+..+.|.+ ++.....++...+.++|+++..+. .+.+|+++ ..|.+|||++++.|+++++.
T Consensus 295 ~~v~sf~~-------------~~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 295 RMNVPFTL-------------ADEELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred CcEEEEEc-------------CChHHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 12233332 222223567678889999985543 24578864 45799999999999998753
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-11 Score=117.48 Aligned_cols=275 Identities=16% Similarity=0.126 Sum_probs=163.2
Q ss_pred EEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHH
Q 011959 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~ 238 (474)
+-+.|||-|+..+.+....+.++..|.+.++++.- +.......|..+...++-+... .. -|++.+-.
T Consensus 98 ~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~N-H~~If~~aGl~v~~Y~Yyd~~~---------~~---~df~~mla 164 (396)
T COG1448 98 VQTLGGTGALRVAADFLARFFPDATVWISDPTWPN-HKAIFEAAGLEVETYPYYDAET---------KG---LDFDGMLA 164 (396)
T ss_pred eecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHh-HHHHHHhcCCceeeeecccccc---------cc---ccHHHHHH
Confidence 45789999999999977777777888888888744 4445555555444322211111 00 16777777
Q ss_pred HHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCcccccc------CCCCce-e-
Q 011959 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF------GVTPDL-T- 310 (474)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~------g~~pdi-~- 310 (474)
.|++.+.....++-.+.+|++|.- ++.+.|++|.++.++.+.+-++|=+|-||..| ...+.+ ...+.+ +
T Consensus 165 ~L~~a~~~~vvLLH~CcHNPTG~D-~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G--leeDa~~lR~~a~~~~~~lva 241 (396)
T COG1448 165 DLKTAPEGSVVLLHGCCHNPTGID-PTEEQWQELADLIKERGLIPFFDIAYQGFADG--LEEDAYALRLFAEVGPELLVA 241 (396)
T ss_pred HHHhCCCCCEEEEecCCCCCCCCC-CCHHHHHHHHHHHHHcCCeeeeehhhhhhccc--hHHHHHHHHHHHHhCCcEEEE
Confidence 777655444444445566777755 45555999999999999999999999998333 111111 123333 3
Q ss_pred -ehhhhcC-CCcceEEEE-e--cHHHHHhhcCCCCcccccCCCCChHHHH-HHHHHHHH--h-----cC-CCHHHHHHHH
Q 011959 311 -TLGKIIG-GGLPVGAYG-G--RRDIMEMVAPAGPMYQAGTLSGNPLAMT-AGIHTLKR--L-----KE-PGTYEYLNKI 376 (474)
Q Consensus 311 -t~sK~l~-~G~~iG~~~-~--~~~i~~~~~~~~~~~~~~t~~~~~~~~a-aa~aal~~--~-----~~-~~~~~~~~~~ 376 (474)
+|||.|| =|-|+|++. . +++..+.+...-+...-++||.+|---+ .....|+. + .+ +++++++.++
T Consensus 242 ~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~m 321 (396)
T COG1448 242 SSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEM 321 (396)
T ss_pred ehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999 588999972 2 3344443321101223346665543322 22222211 1 11 4566667777
Q ss_pred HHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe-cCC
Q 011959 377 TGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS-LAH 455 (474)
Q Consensus 377 ~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~-~~~ 455 (474)
+..|.+.|++......+..-....|+|...=+. .+.+.+..-+.||++..+| |++ ...
T Consensus 322 R~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls-----------------~~QV~rLree~~IY~v~sG----Ri~vaGl 380 (396)
T COG1448 322 RQALVDALKALGAPRNFDFIISQRGMFSYTGLS-----------------PEQVDRLREEFGIYLVASG----RINVAGL 380 (396)
T ss_pred HHHHHHHHHhhCCCcccchHhhcCceeecCCCC-----------------HHHHHHHHHhccEEEecCC----eeeeccC
Confidence 777777777654433322223344443211110 1334334346799998876 665 466
Q ss_pred cHHHHHHHHHHHHHH
Q 011959 456 SSDDIQHTITAAEKV 470 (474)
Q Consensus 456 t~e~i~~~l~~l~~~ 470 (474)
++..|+.+++.|.++
T Consensus 381 ~~~ni~~va~ai~~v 395 (396)
T COG1448 381 NTSNIDYVAKAIAAV 395 (396)
T ss_pred ChhhHHHHHHHHHhh
Confidence 999999999998875
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-11 Score=122.66 Aligned_cols=307 Identities=16% Similarity=0.077 Sum_probs=169.5
Q ss_pred CCHHHHHHHHHHHhhCCC--------------CCeEEEeCCHHHHHHHHHHHhHhhcC----------------------
Q 011959 137 PCLLENVLAEMVISAVPS--------------IEMVRFVNSGTEACMGVLRLARAFTG---------------------- 180 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~--------------~~~v~~~~sGseA~~~al~~ar~~~~---------------------- 180 (474)
.++++.++.+++++.+.+ ...-.|++|||+||..|+..||...-
T Consensus 127 ~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~ 206 (522)
T TIGR03799 127 FTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYG 206 (522)
T ss_pred hHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhcc
Confidence 357888899999887621 12357899999999999999986420
Q ss_pred -CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-----CHHHHHHHHhc---CCCCeEEEE
Q 011959 181 -RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFEN---NKGEIAAII 251 (474)
Q Consensus 181 -~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~---~~~~~a~vi 251 (474)
++.+|+....-|.+..-+....|.+.. ++..+|.+ |+++|++.|++ .+..+.+|+
T Consensus 207 ~~~~~v~~S~~~H~S~~kaa~~lglg~~----------------~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vv 270 (522)
T TIGR03799 207 YDGLAILVSERGHYSLGKAADVLGIGRD----------------NLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIV 270 (522)
T ss_pred CCceEEEECCCchHHHHHHHHHcCCCcc----------------cEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEE
Confidence 123555555566655544444443210 11222211 79999998863 222334444
Q ss_pred EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCC-CCceeeh--hhhcCCCcceEEEEe
Q 011959 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTTL--GKIIGGGLPVGAYGG 327 (474)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~t~--sK~l~~G~~iG~~~~ 327 (474)
......++|.+.| +++|.++|++||+++++|-+|.|. .....+....-|+ ..|.+++ -|.+.+.+.+|.++.
T Consensus 271 ataGtt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llv 346 (522)
T TIGR03799 271 GVAGTTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLF 346 (522)
T ss_pred EEecCcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEE
Confidence 4444557899999 999999999999999999999765 2111010112344 5687765 488876677999977
Q ss_pred c-HHHHHhhcCCCCcc------c--ccCCCCChHHH-HHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCe
Q 011959 328 R-RDIMEMVAPAGPMY------Q--AGTLSGNPLAM-TAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (474)
Q Consensus 328 ~-~~i~~~~~~~~~~~------~--~~t~~~~~~~~-aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (474)
+ ++..+.+.....+. . ..++.++.... ....++|+.+.. +.+.++..++.+++.+.|++.. ++.
T Consensus 347 r~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~---~~e 423 (522)
T TIGR03799 347 KDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQP---DFE 423 (522)
T ss_pred eCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCC---CeE
Confidence 5 45555554311110 0 01122222222 234566766654 4555566666666666665431 121
Q ss_pred eEEeeeceeEEEEEecCCCcCcccc-----ccc----chHHHHHHHHHHHHCCeEecc-c-----C---C--cceEE---
Q 011959 395 ICGGYISGMFGFFFTEGPVYNFEDA-----KKS----ETTKFARFYRGMLEEGVYFAP-S-----Q---F--EAGFT--- 451 (474)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~Gv~v~~-~-----~---~--~~~~~--- 451 (474)
...+..-.++.|.+........... ... .......+.+.+.+.|..+.. . . . ..+|+
T Consensus 424 l~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~ 503 (522)
T TIGR03799 424 LVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLA 503 (522)
T ss_pred EecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEec
Confidence 1112222233444322211110000 000 122335677777778854332 1 1 1 12344
Q ss_pred ecCCcHHHHHHHHHH
Q 011959 452 SLAHSSDDIQHTITA 466 (474)
Q Consensus 452 ~~~~t~e~i~~~l~~ 466 (474)
+...|+++|+.+++.
T Consensus 504 np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 504 NPLTTHEILQDILDE 518 (522)
T ss_pred CCCCCHHHHHHHHHH
Confidence 456789999987764
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.9e-11 Score=115.59 Aligned_cols=307 Identities=14% Similarity=0.046 Sum_probs=178.3
Q ss_pred CHHHHHHHHHHHHhcC--CCC------CCC---HHHHHHHHHHHhhCCC--CCeEEEe-CCHHHHHHHHHHHhHhhcCCc
Q 011959 117 DDQVLAALGETMKKGT--SFG------APC---LLENVLAEMVISAVPS--IEMVRFV-NSGTEACMGVLRLARAFTGRE 182 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~--~~~------~~~---~~~~~la~~l~~~~~~--~~~v~~~-~sGseA~~~al~~ar~~~~~~ 182 (474)
+..|++++.+.+.+.. +.+ ... +...++.+.+.+.+.. ..+|+|+ +|||+|+++++.. ...+.+
T Consensus 4 p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~n--l~~~~~ 81 (349)
T TIGR01364 4 PEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLN--LLAEGK 81 (349)
T ss_pred CHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHh--cCCCCC
Confidence 5688899988887421 111 112 5566778888888752 3467776 5599999999984 223567
Q ss_pred EEEEEeCCCCCCchhHHHhc-CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCc
Q 011959 183 RIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 261 (474)
Q Consensus 183 ~ii~~~~~yhg~~~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~ 261 (474)
++++...+.+|....-++.. |. +....... ..++.+..++++.... .++++|.+..+.+.+|.
T Consensus 82 ~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~~v~~th~ETstGv 145 (349)
T TIGR01364 82 VADYIVTGAWSKKAAKEAKKYGV-VNVVASGK-------------EGNYTKIPDPSTWEIS--EDAAYVHYCANETIHGV 145 (349)
T ss_pred eEEEEECCHHHHHHHHHHHHhCC-cEEEeccc-------------cCCCCCCCCHHhcCCC--CCCCEEEEcCCCCcccE
Confidence 77887777777655444332 33 22111100 0122233333322221 36778888887788888
Q ss_pred ccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCC
Q 011959 262 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG 339 (474)
Q Consensus 262 i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~ 339 (474)
..+ ++++.+++++|+|-+++ + .+.....+.+ |++ +..|+||+ ..+|.++.++++++.+.+..
T Consensus 146 ~~~---------~l~~~~~~l~iVDavss-~-g~~~id~~~~----d~~~~ssqK~lgP-~Glg~l~~s~~~~~~~~~~~ 209 (349)
T TIGR01364 146 EFR---------ELPDVKNAPLVADMSSN-I-LSRPIDVSKF----GLIYAGAQKNIGP-AGLTVVIVRKDLLGRASRIT 209 (349)
T ss_pred ecc---------eecccCCCeEEEEcccc-c-cCccCCHHHc----cEEEEecccccCC-CceEEEEECHHHHhhcccCC
Confidence 765 66777899999999995 1 1112222222 344 45699972 23999999999988765421
Q ss_pred C-cc-------cccCC-CCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCeeE-E--eeec-e
Q 011959 340 P-MY-------QAGTL-SGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAIC-G--GYIS-G 402 (474)
Q Consensus 340 ~-~~-------~~~t~-~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v--~~~g-~ 402 (474)
+ .. ...++ +.|.....+..++|+.+.+. ...++.+++.+++++.|+++. ++... . .... .
T Consensus 210 ~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~---gl~~~~~~~~~rs~~ 286 (349)
T TIGR01364 210 PSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSN---GFYRNPVDPRNRSRM 286 (349)
T ss_pred CCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC---CeeccCCCHHHcCCe
Confidence 1 00 01223 44556666666889888654 334444555555555555541 12111 0 0111 2
Q ss_pred eEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEEec--CCcHHHHHHHHHHHHHHHhh
Q 011959 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSL--AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~~~--~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+.+.+.+ .....++...+.++|+.+.++. ...+|+++ ..|+||||.++++|+++.++
T Consensus 287 v~sf~~~~-------------~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 287 NVVFTLGN-------------EELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred EEEEecCC-------------hhHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 23333221 1112566678889999665553 24678764 55899999999999998764
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.1e-11 Score=126.31 Aligned_cols=296 Identities=12% Similarity=0.109 Sum_probs=170.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEe-CCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCC
Q 011959 140 LENVLAEMVISAVPSIEMVRFV-NSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212 (474)
Q Consensus 140 ~~~~la~~l~~~~~~~~~v~~~-~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~ 212 (474)
...+|.+++++++ +.+.+-+- +||+.+..+++...|.| ++|++ ++...+-|+.........|..+..++..
T Consensus 544 ~i~elq~~l~eLt-Gmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~-vLIp~saHgtNpasa~~~GieVv~Vp~D 621 (954)
T PRK12566 544 MIDELEAWLCAIT-GFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDI-CLIPSSAHGTNPASAQMAGMRVVIVECD 621 (954)
T ss_pred HHHHHHHHHHHHH-CCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCE-EEecccccccCHHHHHHCCCEEEEeccC
Confidence 3457778888888 66655544 58998888888877765 34444 4455577776655555555443332221
Q ss_pred CCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C
Q 011959 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G 291 (474)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g 291 (474)
..|.. |+++|++.++++.+++++|++..+++.++...+ +++|.++|+++|+++++|-++. +
T Consensus 622 -~~G~i-------------Dle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~----V~eI~~iah~~Galv~vDgA~~~a 683 (954)
T PRK12566 622 -PDGNV-------------DLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEG----IREICEVVHQHGGQVYMDGANLNA 683 (954)
T ss_pred -CCCCc-------------CHHHHHHHhhccCCCEEEEEEEecCcCceecch----HHHHHHHHHHcCCEEEEEeeChhh
Confidence 12211 899999999866678888888766554544334 9999999999999999999884 2
Q ss_pred cccCCCccccccCCCCceeehh--hhcC-----CCcceEEEEecHHHHHhhcCCC------C-cccc---cCCCCChHHH
Q 011959 292 FRLAYGGAQEYFGVTPDLTTLG--KIIG-----GGLPVGAYGGRRDIMEMVAPAG------P-MYQA---GTLSGNPLAM 354 (474)
Q Consensus 292 ~r~g~~~~~~~~g~~pdi~t~s--K~l~-----~G~~iG~~~~~~~i~~~~~~~~------~-~~~~---~t~~~~~~~~ 354 (474)
. ...-.... +..|+++++ |+|+ ||.-+|.+..++++...+.... . .... ....++.+..
T Consensus 684 ~--~~l~~Pg~--~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l 759 (954)
T PRK12566 684 Q--VGLARPAD--IGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASIL 759 (954)
T ss_pred c--cCCCChhh--cCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHH
Confidence 1 11111122 345777654 9885 2344777777776665554210 0 1011 1122233333
Q ss_pred HHHHHHHHHhcCCCHHHHHH----HHHHHHHHHHHHHhhhcCCeeEEeeece---eEEEEEecCCCcCcccccccchHHH
Q 011959 355 TAGIHTLKRLKEPGTYEYLN----KITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFEDAKKSETTKF 427 (474)
Q Consensus 355 aaa~aal~~~~~~~~~~~~~----~~~~~l~~~L~~~~~~~~~~~~v~~~g~---~~~i~~~~~~~~~~~~~~~~~~~~~ 427 (474)
.++..-++.+-.+ +.+.. .+.+|++++|.+. +++... ...+. -+.+.+.. ... ......
T Consensus 760 ~~A~~Yi~~lG~e--Lk~aa~~ailnAnYla~rL~~~---~~v~~~-~~~~~~~hEfii~~~~--l~~------~~g~~~ 825 (954)
T PRK12566 760 PISWMYIAMMGPQ--LADASEVAILSANYLANQLGGA---FPVLYR-GRNERVAHECILDLRP--LKA------QTGISE 825 (954)
T ss_pred HHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHhHhh---CCCCcC-CCCCCeeeEEEEEccc--ccc------ccCCCH
Confidence 4444444443323 33333 4677888888662 333321 11111 12222210 000 001122
Q ss_pred HHHHHHHHHCCeEecccC---CcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 428 ARFYRGMLEEGVYFAPSQ---FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 428 ~~~~~~l~~~Gv~v~~~~---~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
..+.++|++.|+...... .+.+++ .-..+++|||+++++|+.+.++
T Consensus 826 ~dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e 876 (954)
T PRK12566 826 EDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAE 876 (954)
T ss_pred HHHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHH
Confidence 568888999988754321 234455 4567999999999999888765
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-11 Score=120.23 Aligned_cols=311 Identities=14% Similarity=0.054 Sum_probs=168.7
Q ss_pred CCHHHHHHHHHHHHhcCCCC-----CC------CHHHHHHHHHHHhhCC--CCCeEEEeCC-HHHHHHHHHHHhHhhcCC
Q 011959 116 ADDQVLAALGETMKKGTSFG-----AP------CLLENVLAEMVISAVP--SIEMVRFVNS-GTEACMGVLRLARAFTGR 181 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~-----~~------~~~~~~la~~l~~~~~--~~~~v~~~~s-GseA~~~al~~ar~~~~~ 181 (474)
-++.|++|+.+.+.+..+.+ .. .+...+..+.+++++. ..+.|+|++| ||+|++.++.....-.++
T Consensus 10 ~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~ 89 (355)
T cd00611 10 LPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGT 89 (355)
T ss_pred CCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCe
Confidence 47899999999885421111 11 1556778888888886 3467888866 999999999842100113
Q ss_pred cEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC-HHHHHHHHhcCCCCeEEEEEccccCCCC
Q 011959 182 ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENNKGEIAAIILEPVVGNSG 260 (474)
Q Consensus 182 ~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d-~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (474)
..+|+. +.|.-+........|..+..+..+. .+ .+.+ .+..+..+. +++++|.+..+.+.+|
T Consensus 90 ~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~-~g------------~~~~~~~~~~~~~~---~~~~lV~~~h~~t~tG 152 (355)
T cd00611 90 ADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKE-EG------------KYTKIPDVETWDLA---PDAAYVHYCSNETIHG 152 (355)
T ss_pred EEEEEC-CHHHHHHHHHHHhcCCCcEEEeccc-cc------------CCCCCCCHhhcCCC---CCCCEEEEeCCccccc
Confidence 333433 3332111111122232221111110 00 0112 111112222 3677888888777788
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCC
Q 011959 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 340 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~ 340 (474)
.+.+ ++++.||+++++|-+++- .+.....+.+++ ++.+--|.+| ...+|.+++++++.+.+.+..+
T Consensus 153 ~~~~---------~i~~~~g~~~~VDa~qs~--g~~~idv~~~~~--~~ss~~K~lG-P~G~g~l~~~~~~~~~~~~~~~ 218 (355)
T cd00611 153 VEFD---------EVPDTGGVPLVADMSSNI--LSRPIDVSKFGV--IYAGAQKNLG-PAGVTVVIVRKDLLGKARKITP 218 (355)
T ss_pred EEcc---------eecccCCCeEEEEccccc--cCCCCCHHHhCE--EEeecccccC-CCceEEEEECHHHHhhcccCCC
Confidence 8643 455669999999999961 111222233332 3333569886 2239999999998877653211
Q ss_pred -cc-------cccCC-CCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeec-eeEEE
Q 011959 341 -MY-------QAGTL-SGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS-GMFGF 406 (474)
Q Consensus 341 -~~-------~~~t~-~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g-~~~~i 406 (474)
.. ...++ +.|..+..+..++|+.+.+. ...++.+++.+++++.|+++-.-+....+..... ..+.|
T Consensus 219 ~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf 298 (355)
T cd00611 219 SMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPF 298 (355)
T ss_pred CcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEE
Confidence 11 01112 34555667777889887654 3345555666666666665410000010000111 23444
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEEecCC--cHHHHHHHHHHHHHH
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSLAH--SSDDIQHTITAAEKV 470 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~~~~~--t~e~i~~~l~~l~~~ 470 (474)
.+.. ......+...+.++|+.+.++. .+.+|+++.+ |+||||++++.|+++
T Consensus 299 ~~~~-------------~~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 299 RLGK-------------EELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred EcCC-------------hhhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 4321 0111455568889999844442 2467887555 999999999999885
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-11 Score=121.14 Aligned_cols=309 Identities=12% Similarity=-0.015 Sum_probs=171.5
Q ss_pred CHHHHHHHHHHHHhcC--CCC--CCCHHHHHHHHHHHhhCCC--CCeEEEe-CCHHHHHHHHHHHhHhhcCCcEEEEEeC
Q 011959 117 DDQVLAALGETMKKGT--SFG--APCLLENVLAEMVISAVPS--IEMVRFV-NSGTEACMGVLRLARAFTGRERIIKFEG 189 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~--~~~--~~~~~~~~la~~l~~~~~~--~~~v~~~-~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (474)
+|+|++++..+..... ++. ...+...+..+.+++++.. ..+|+|+ +|||.+++.++.. +..+ +.+....
T Consensus 15 ~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~---l~~~-~~l~i~~ 90 (361)
T TIGR01366 15 RLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFG---LIEK-KSLHLSF 90 (361)
T ss_pred CHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHh---cccc-cccEEec
Confidence 7888888775421111 111 1245566777778877752 3368875 7799999999983 3322 3333334
Q ss_pred CCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHH
Q 011959 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 269 (474)
Q Consensus 190 ~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (474)
+.||....-.+... |.. + ....+.++++ +.++..+ .+++++|.+..+.+.+|.+.| +
T Consensus 91 G~~~~~~~~~a~~~--------~~~-~-----~~~~~~~~~~--~~~~~~~---~~~~~lV~~~h~et~tG~~~p----i 147 (361)
T TIGR01366 91 GEFSSKFAKAVKLA--------PWL-G-----EPIIVTADPG--SAPEPQA---DPGVDVIAWAHNETSTGVAVP----V 147 (361)
T ss_pred CHHHHHHHHHHHhh--------hcc-C-----CceEEecCCC--CCCCCcc---CCCCCEEEEcccCCccceecc----c
Confidence 55553333322211 000 0 0012222221 1122112 246889999999899999999 5
Q ss_pred HHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeeh--hhhcCCCcceEEEEecHHHHHhhcCCC---C---c
Q 011959 270 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRRDIMEMVAPAG---P---M 341 (474)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~--sK~l~~G~~iG~~~~~~~i~~~~~~~~---~---~ 341 (474)
++| ++++|+++|+|-+++ + .+.....+ . .|++++ .|++++---++.++.++++++.+.+.. . .
T Consensus 148 ~~I---~~~~g~~~iVDavqs-~-g~~~idv~--~--~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~ 218 (361)
T TIGR01366 148 RRP---EGSDDALVVIDATSG-A-GGLPVDIA--E--TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPE 218 (361)
T ss_pred ccc---cccCCCeEEEEcCcc-c-cCCCCCHH--H--CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCch
Confidence 444 689999999999996 1 11111122 1 477654 599983112556677998887765210 0 0
Q ss_pred c-----------cccCCCCChHH-HHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-eeceeE
Q 011959 342 Y-----------QAGTLSGNPLA-MTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMF 404 (474)
Q Consensus 342 ~-----------~~~t~~~~~~~-~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~ 404 (474)
+ ...|.+.+++. ..+..++++.+.+. ...++.+++.+++++.|.+...-........ ......
T Consensus 219 ~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~ 298 (361)
T TIGR01366 219 FLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVG 298 (361)
T ss_pred hhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceE
Confidence 1 02344444444 33556788877653 2335555666666666666531111110000 001111
Q ss_pred EEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEe--cCCcHHHHHHHHHHHHHHHhhC
Q 011959 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTS--LAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~--~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
.+.|. +......+.+.|.++||.+.++. ...+|++ ...|++|+++++++|+++++++
T Consensus 299 ~v~~~-------------~g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 299 TIDFV-------------DDIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVERL 361 (361)
T ss_pred EEECC-------------CccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence 22221 11223567888888999987652 2346775 4569999999999999998875
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-10 Score=122.85 Aligned_cols=342 Identities=14% Similarity=0.107 Sum_probs=188.4
Q ss_pred CEEEeccCChhhccCCCCCH-HHHHHHHHHHHhc--CCCC-C-----CCHHHHHHHHHHHhhCC-CC-C-eEEEeCCHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADD-QVLAALGETMKKG--TSFG-A-----PCLLENVLAEMVISAVP-SI-E-MVRFVNSGTE 166 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p-~v~~a~~~~~~~~--~~~~-~-----~~~~~~~la~~l~~~~~-~~-~-~v~~~~sGse 166 (474)
..|+|..+. . ..+| .|.+++.+.+... ...+ + ..+...+..+.++++++ .. + .|+||+|+|+
T Consensus 35 ~iYLD~Aat---t---~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~ 108 (805)
T PLN02724 35 VVYLDHAGA---T---LYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATA 108 (805)
T ss_pred CEeEeCCCC---C---CCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHH
Confidence 578887754 1 2244 4455454544431 1111 1 13456677788888886 23 3 5899999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHh---cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHh--
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE-- 241 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~-- 241 (474)
|+..+.... .+..++.||+ ...-|......... .|..+..++.+...+.+..... .+.. +.++|++.++
T Consensus 109 alnlva~~l-~~~~gd~Iv~-t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g-~~~~---~~~~l~~~~~~~ 182 (805)
T PLN02724 109 ALKLVGETF-PWSSESHFCY-TLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQG-SVVV---KSRGLQRRNTSK 182 (805)
T ss_pred HHHHHHHHC-CCCCCCeEEE-eeccccchHHHHHHHHHcCCeEEeccchhcccccccccc-cccc---chhhhhhhhhhh
Confidence 999887632 1344566666 44555554444322 1322222111100000000000 0000 1244555431
Q ss_pred --c---CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh--------CCEEEEeccccCcccCCCccccccCCCCc
Q 011959 242 --N---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN--------GALLIFDEVMTGFRLAYGGAQEYFGVTPD 308 (474)
Q Consensus 242 --~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~--------g~llI~DEv~~g~r~g~~~~~~~~g~~pd 308 (474)
. ..+++++|.+..+.|.+|.+.| ++.+..+++.. ++++++|-+|+ .|. ...+.-.+.+|
T Consensus 183 l~~~~~~~~~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~---~g~-~piDv~~~~~D 254 (805)
T PLN02724 183 LQKREDDGEAYNLFAFPSECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG---CGT-SPPDLSRYPAD 254 (805)
T ss_pred hccccccCCCcceEEEEccccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh---cCC-CCCChhhcCCC
Confidence 1 1235578888888888999999 76665544432 36899999995 111 11222234578
Q ss_pred eeehh--hhcCCCcceEEEEecHHHHHhhcCCCCccccc-----------------------CCCCChHHHHHHHHHHHH
Q 011959 309 LTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG-----------------------TLSGNPLAMTAGIHTLKR 363 (474)
Q Consensus 309 i~t~s--K~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~-----------------------t~~~~~~~~aaa~aal~~ 363 (474)
.+++| |.+|+...+|++++++++++.+.+. .+.++ .-+.|..++++..++|+.
T Consensus 255 fl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~--~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~ 332 (805)
T PLN02724 255 FVVVSFYKIFGYPTGLGALLVRRDAAKLLKKK--YFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKL 332 (805)
T ss_pred EEEEecceeccCCCCceEEEEehhhhhhhcCC--ccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHH
Confidence 87654 9887434599999999988776631 11110 113456677777788887
Q ss_pred hcC---CCHHHHHHHHHHHHHHHHHHHhhhcC---CeeE--------EeeeceeEEEEEecCCCcCcccccccchHHHHH
Q 011959 364 LKE---PGTYEYLNKITGELTQGIIDAGKKAG---HAIC--------GGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 429 (474)
Q Consensus 364 ~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~---~~~~--------v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 429 (474)
+.+ +...++..++.+++.+.|.++....+ +... ....+.++.|.+...+...+ ....
T Consensus 333 l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v---------~~~~ 403 (805)
T PLN02724 333 LNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWV---------GHRE 403 (805)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEe---------CHHH
Confidence 765 55677788888888888877631111 1110 01245666776654321111 0122
Q ss_pred HHHHHHHCCeEecccCC---------------------------------------cceEEe--cCCcHHHHHHHHHHHH
Q 011959 430 FYRGMLEEGVYFAPSQF---------------------------------------EAGFTS--LAHSSDDIQHTITAAE 468 (474)
Q Consensus 430 ~~~~l~~~Gv~v~~~~~---------------------------------------~~~~~~--~~~t~e~i~~~l~~l~ 468 (474)
+...+.++||.++.+.. +.+|++ ...|.+|||++++.|+
T Consensus 404 v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~ 483 (805)
T PLN02724 404 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFII 483 (805)
T ss_pred HHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHH
Confidence 33333455776644311 235665 4559999999999999
Q ss_pred HHH
Q 011959 469 KVL 471 (474)
Q Consensus 469 ~~~ 471 (474)
+.+
T Consensus 484 ~~~ 486 (805)
T PLN02724 484 SSF 486 (805)
T ss_pred HHh
Confidence 865
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-13 Score=128.56 Aligned_cols=197 Identities=21% Similarity=0.188 Sum_probs=120.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCC--
Q 011959 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG-- 193 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg-- 193 (474)
.+|++.+++.+.. .+...++.++...+|.+++++.+ +.+.++|+.||+.||..+++. ++.+..-++.....|-
T Consensus 7 ~~~~m~~a~~~a~-~gd~~Yg~D~~~~~l~~~i~~l~-g~e~a~f~~sGT~An~~al~~---~~~~~~~vi~~~~aHi~~ 81 (290)
T PF01212_consen 7 PTPAMLEAMAAAN-VGDDAYGEDPTTARLEERIAELF-GKEAALFVPSGTMANQLALRA---HLRPGESVICADTAHIHF 81 (290)
T ss_dssp S-HHEEHHHHHTT-SB-CCTTSSHHHHHHHHHHHHHH-TSSEEEEESSHHHHHHHHHHH---HHHTTEEEEEETTEHHHH
T ss_pred CCHHHHHHHHccc-cCCcccCCChhHHHHHHHHHHHc-CCCEEEEeCCCChHHHHHHHH---HHhcCCceeccccceeee
Confidence 7899999995443 33323345778889999999988 678889999999999999994 4444444444433333
Q ss_pred CchhHH-HhcCCCCccCCCCCCC-CCCCCCCCceEEccCCCHHHHHHHHhc---CCCCeEEEEEccccCC-CCcccCCHH
Q 011959 194 HADPFL-VKAGSGVATLGLPDSP-GVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGN-SGFIAPKPD 267 (474)
Q Consensus 194 ~~~~~~-~~~g~~~~~~~~~~~~-g~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~a~vi~ep~~~~-~G~i~~~~~ 267 (474)
+..++. ..+|..+..+ +... |.. |+++|++.+.. |..++++|.+|...+. +|.+.+ .+
T Consensus 82 ~E~ga~~~~~G~~~~~l--~~~~~G~l-------------~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s-~~ 145 (290)
T PF01212_consen 82 DETGAIEELSGAKLIPL--PSDDDGKL-------------TPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYS-LE 145 (290)
T ss_dssp SSTTHHHHHTTCEEEEE--BECTGTBB--------------HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB----HH
T ss_pred eccchhhHhcCcEEEEC--CCcccCCC-------------CHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCC-HH
Confidence 233333 3344433221 2122 211 79999999986 4457899999887776 455555 55
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEE-EecHHHHHhh
Q 011959 268 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY-GGRRDIMEMV 335 (474)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~-~~~~~i~~~~ 335 (474)
.+++|.++|++||+.|+.|-+-..- -.........+--..|++ +++|.++ .+.|++ ++++++++..
T Consensus 146 el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g--~~~Gavl~~~~~~i~~~ 215 (290)
T PF01212_consen 146 ELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGG--APGGAVLAGNKEFIAKA 215 (290)
T ss_dssp HHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT---SSSEEEEEESHHHHHHH
T ss_pred HHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccc--cccceEEEechHHHHHH
Confidence 5999999999999999999664200 000000111111235766 4667654 467776 7888865543
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.9e-11 Score=105.72 Aligned_cols=293 Identities=18% Similarity=0.198 Sum_probs=180.5
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCC
Q 011959 142 NVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGA 221 (474)
Q Consensus 142 ~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~ 221 (474)
.+|++.| +.|.+.+|++.-+|-.+++. ++.++++.++.|+.-|-.+..+....|..+..++ ..+.|
T Consensus 68 ~dlaeFl-----g~D~~R~t~GARe~KfavMh---al~~~gd~vV~D~~aHYttyvAAEragl~v~eVp---~tg~P--- 133 (382)
T COG1103 68 EDLAEFL-----GMDEVRVTAGAREAKFAVMH---ALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVP---NTGYP--- 133 (382)
T ss_pred HHHHHHh-----CCceeeecccchhhHHHHHH---HhccCCCEEEEcCcchHHHHHHHHhcCCeEEecC---CCCCC---
Confidence 3455555 89999999999999999998 7888999999999999888777777787665433 22222
Q ss_pred CCceEEccCCCHHH----HHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCC
Q 011959 222 TYETLTAPFNDVSA----LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 297 (474)
Q Consensus 222 ~~~~~~~~~~d~~~----le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~ 297 (474)
.+.+ +++. +++..++.++.+++.++..+.++-|.+.. -+++.++|++||++|++.-+|+ .|.+
T Consensus 134 ---ey~i---~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt---~Grm 200 (382)
T COG1103 134 ---EYKI---TPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD----AKKVAKICREYGVPLLLNCAYT---VGRM 200 (382)
T ss_pred ---ceEe---cHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh----hHHHHHHHHHcCCceEeeccee---eccc
Confidence 2222 3444 44544554456788888888888888888 7889999999999999999996 2211
Q ss_pred ccccccCCCCceeeh--hhhcCCCcceEEEEecHHHHHhhcCCC-C------c-ccccCCCCChHHHHHHHHHHHHhcC-
Q 011959 298 GAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGRRDIMEMVAPAG-P------M-YQAGTLSGNPLAMTAGIHTLKRLKE- 366 (474)
Q Consensus 298 ~~~~~~g~~pdi~t~--sK~l~~G~~iG~~~~~~~i~~~~~~~~-~------~-~~~~t~~~~~~~~aaa~aal~~~~~- 366 (474)
..+.-.+.+|.++- -|++++--|+|.+..+++..+.+-+.. + . ..+-|..+-|+.. ..+.+-...+
T Consensus 201 -pvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivT--lmASfP~V~eR 277 (382)
T COG1103 201 -PVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVT--LMASFPHVVER 277 (382)
T ss_pred -cccccccCCCEEEecCccchhccCCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHH--HHhcCHHHHHH
Confidence 12233456787754 489986569999999999877654321 1 0 1222333333332 2222211111
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHh--hhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeE-ec
Q 011959 367 -PGTYEYLNKITGELTQGIIDAG--KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY-FA 442 (474)
Q Consensus 367 -~~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~-v~ 442 (474)
..+-+. -++.+++.+.|+++. .+.+... ...-+| .|+ .+....+ ..+ .....--+++.|.++||. +.
T Consensus 278 VkrWdeE-v~kaR~fv~elEkigg~~qlG~rP--k~HdLm-~Fe--tp~f~eI-akk--~~r~gyFlY~ELK~RgI~GI~ 348 (382)
T COG1103 278 VKRWDEE-VEKARWFVAELEKIGGVKQLGERP--KNHDLM-KFE--TPVFHEI-AKK--HKRKGYFLYEELKKRGIHGIQ 348 (382)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhhhHHHhCCCC--ccccee-eec--CchHHHH-HHh--CcCCceeeHHHHHhcCccccc
Confidence 222222 345677888887764 1222110 011111 121 1100000 000 001112357888899886 45
Q ss_pred ccCCcceEEe-cCCcHHHHHHHHHHHHHHHhh
Q 011959 443 PSQFEAGFTS-LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 443 ~~~~~~~~~~-~~~t~e~i~~~l~~l~~~~~~ 473 (474)
|+....+-++ +..+.|+++..++++++++++
T Consensus 349 ~G~Tk~~K~svyGl~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 349 PGQTKYFKLSVYGLSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred cCceeEEEEEeecCCHHHHHHHHHHHHHHHHh
Confidence 5554455554 788999999999999998865
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.5e-11 Score=119.47 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
..+...++.+.+++.. +.+..++++||+.|+.+++... ...+++||+....|.+.......... ..|
T Consensus 67 ~~pt~~~le~~la~l~-g~~~~v~fsSG~~Ai~~al~~l--l~~Gd~VI~~~~~y~~t~~~~~~~l~----------~~G 133 (437)
T PRK05613 67 TNPTVEALENRIASLE-GGVHAVAFASGQAAETAAILNL--AGAGDHIVTSPRLYGGTETLFLVTLN----------RLG 133 (437)
T ss_pred cChHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHh--cCCCCEEEECCCccHHHHHHHHHHHH----------hcC
Confidence 3555678888888877 4467888888999999888732 34567788776667664221111100 001
Q ss_pred CCCCCCCceEEcc-CCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 217 VPKGATYETLTAP-FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~-~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
.++..++ .+|++++++.++. ++++|++|...|+.|.+.+ +++|+++|+++|+++|+|.++.. +
T Consensus 134 ------i~v~~vd~~~d~e~l~~~l~~---~tk~V~~e~~~Np~~~v~d----i~~I~~la~~~gi~livD~t~a~---g 197 (437)
T PRK05613 134 ------IEVTFVENPDDPESWQAAVQP---NTKAFFGETFANPQADVLD----IPAVAEVAHRNQVPLIVDNTIAT---A 197 (437)
T ss_pred ------eEEEEECCCCCHHHHHHhCCc---cCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCeEEEECCCcc---c
Confidence 1233332 3378999988873 5778888888788888888 99999999999999999999942 1
Q ss_pred CCccccccCCCCcee--ehhhhcCC-CcceEEEEe
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGG 327 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G~~iG~~~~ 327 (474)
.......+|. |++ ++.|.++| |--+|+++.
T Consensus 198 ~~~~p~~~Ga--Divv~S~~K~l~G~gd~~gG~vv 230 (437)
T PRK05613 198 ALVRPLELGA--DVVVASLTKFYTGNGSGLGGVLI 230 (437)
T ss_pred cccChHHhCC--CEEEeeccceecCCCcceeEEEE
Confidence 1111112344 666 57799886 544566544
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-10 Score=113.34 Aligned_cols=252 Identities=21% Similarity=0.171 Sum_probs=158.0
Q ss_pred CCHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHhhCCCCC--eEEEeCCHHHHHHHHHHHhHhhcC----C----
Q 011959 116 ADDQVLAALGETMKKGT----SFGAPCLLENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFTG----R---- 181 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~----~~~~~~~~~~~la~~l~~~~~~~~--~v~~~~sGseA~~~al~~ar~~~~----~---- 181 (474)
.++...+++...+.+.. .+......+.++..++.+.+...+ .-.||+||||||..|+.+||.... .
T Consensus 74 ~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~ 153 (460)
T COG0076 74 VPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGK 153 (460)
T ss_pred CHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 46677777777776632 223446778899999999886323 468999999999999999876542 1
Q ss_pred ---cEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE-EEEEccccC
Q 011959 182 ---ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA-AIILEPVVG 257 (474)
Q Consensus 182 ---~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a-~vi~ep~~~ 257 (474)
...|++....|-+..-++...|.+....+.... .+.+ |+++|++.+.++ .+. +|+..-...
T Consensus 154 ~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~----------~~~i---d~~~l~~~i~~~--t~~g~vV~~aGtT 218 (460)
T COG0076 154 PGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT----------DYRI---DVDALEEAIDEN--TIGGVVVGTAGTT 218 (460)
T ss_pred cCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC----------cccc---CHHHHHHHHHhh--ccCceEEEEecCC
Confidence 114666667888777777777765433221100 0111 899999999864 222 255555556
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c-c-CCCccccccCC-CCceee--hhhhcCCCcceEEEEecHH-
Q 011959 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R-L-AYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD- 330 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r-~-g~~~~~~~~g~-~pdi~t--~sK~l~~G~~iG~~~~~~~- 330 (474)
+.|.+-| +++|.++|++||++|++|-++.|| - . ...+.+ .+++ ..|.++ +-|.+-.-++.|+++.+++
T Consensus 219 ~~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~-~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e 293 (460)
T COG0076 219 DTGSIDD----IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRW-DFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEE 293 (460)
T ss_pred CCCccCC----HHHHHHHHHHcCCcEEEEccccceeecccCccchh-hcCCCCceEEEECcccccCCCCCceEEEEECHH
Confidence 6888988 999999999999999999999988 3 1 221110 1333 235554 4576666678999987765
Q ss_pred -HHHhhcCCCCccc-----ccCCCCCh--HHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHH
Q 011959 331 -IMEMVAPAGPMYQ-----AGTLSGNP--LAMTAGIHTLKRLKEPG---TYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 331 -i~~~~~~~~~~~~-----~~t~~~~~--~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~~ 387 (474)
+.+.+.....+.- ..|..++. -..++..+.++.+-.++ +.++..++.+++.+.|++.
T Consensus 294 ~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~ 361 (460)
T COG0076 294 ALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKL 361 (460)
T ss_pred HhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444331111111 01111122 23445556677765444 4444457777777777764
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=6e-10 Score=110.59 Aligned_cols=229 Identities=17% Similarity=0.161 Sum_probs=137.7
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCC
Q 011959 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~ 217 (474)
++...+|.+.++++. +.+.++.++||+.|+.+++.. ....+++||+....|.+.......... ..|
T Consensus 63 ~P~~~~lE~~la~le-g~~~av~~sSG~aAi~~al~a--ll~~GD~Vl~~~~~yg~t~~~~~~~~~----------~~G- 128 (384)
T PRK06434 63 NPTVQAFEEKYAVLE-NAEHALSFSSGMGAITSAILS--LIKKGKRILSISDLYGQTFYFFNKVLK----------TLG- 128 (384)
T ss_pred ChhHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHH--HhCCCCEEEEecCccchHHHHHHHHHH----------hcC-
Confidence 455577777787777 567889999999999999984 244567788866656553322211110 011
Q ss_pred CCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCC
Q 011959 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 297 (474)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~ 297 (474)
.++..++.++.+.++ +. ++++++|++|.+.|+++.+.+ +++|.++|++++ +++|.++.. .
T Consensus 129 -----i~v~fvd~~~~~~~~--l~--~~~tklv~~e~~snpt~~v~D----i~~I~~la~~~~--lvVD~t~~s-----~ 188 (384)
T PRK06434 129 -----IHVDYIDTDRLNSLD--FD--PSNYDLIYAESITNPTLKVPD----IKNVSSFCHEND--VIVDATFAS-----P 188 (384)
T ss_pred -----cEEEEECCCChhhee--ec--CCCeeEEEEEcCCCCCceeec----HHHHHHHHHHcC--eEEECCCCC-----c
Confidence 123344433334433 22 336889999999888888877 999999999998 466999831 1
Q ss_pred ccccccCCCCceee--hhhhcCC-C-cceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 298 GAQEYFGVTPDLTT--LGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 298 ~~~~~~g~~pdi~t--~sK~l~~-G-~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
......+...|+++ ..|.++| | .-.|.++. ++++.+.++. .....-...+|+.++.++..|+.+ +..+++
T Consensus 189 ~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~---~~~~~G~~~~~~~A~l~~~gL~tL--~~R~~r 263 (384)
T PRK06434 189 YNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVE---RRKTLGSNPDPIQAYLALRGLKTL--GLRMEK 263 (384)
T ss_pred ccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhCCCcH--HHHHHH
Confidence 11122334467764 5699985 3 43555555 4556555541 111112234666655555554433 455666
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeeE------------EeeeceeEEEEEe
Q 011959 373 LNKITGELTQGIIDAGKKAGHAIC------------GGYISGMFGFFFT 409 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~------------v~~~g~~~~i~~~ 409 (474)
..++...+.+.|++ ++.+.. ..+.|.|+.|++.
T Consensus 264 ~~~~a~~~a~~L~~----~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~ 308 (384)
T PRK06434 264 HNKNGMELARFLRD----SKKISNVYYPDTEIGKKVLRGFGGMLSFELR 308 (384)
T ss_pred HHHHHHHHHHHHHc----CCCccEEECCChHHHHHhcCCCCceEEEEEC
Confidence 66777777776664 332211 2356888888884
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8e-10 Score=108.21 Aligned_cols=235 Identities=19% Similarity=0.164 Sum_probs=146.3
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCC
Q 011959 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~ 217 (474)
++....|.+.++++- +.+..+.++||..|+..++.. ....++.|+..+..|.|....+...... .|+
T Consensus 62 nPT~~~lE~~~a~LE-g~~~~~afsSGmaAI~~~~l~--ll~~GD~vl~~~~~YG~t~~~~~~~l~~----------~gi 128 (396)
T COG0626 62 NPTRDALEEALAELE-GGEDAFAFSSGMAAISTALLA--LLKAGDHVLLPDDLYGGTYRLFEKILQK----------FGV 128 (396)
T ss_pred CccHHHHHHHHHHhh-CCCcEEEecCcHHHHHHHHHH--hcCCCCEEEecCCccchHHHHHHHHHHh----------cCe
Confidence 445567777777776 678899999999999998773 3344788998888887744333222110 111
Q ss_pred CCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCC
Q 011959 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 297 (474)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~ 297 (474)
++..+...+.+.+++.+.+ +++++|++|++-|+.-.+.+ +++|.++|+++|+++|+|+.+.. +
T Consensus 129 ------~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~D----I~~i~~~A~~~g~~vvVDNTfat-----P 191 (396)
T COG0626 129 ------EVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPD----IPAIARLAKAYGALVVVDNTFAT-----P 191 (396)
T ss_pred ------EEEEECCCChHHHHHHhcc--cCceEEEEeCCCCccccccc----HHHHHHHHHhcCCEEEEECCccc-----c
Confidence 2343444456666666653 37999999999999888888 99999999999999999999952 1
Q ss_pred ccccccCCCCcee--ehhhhcCCC--cceEEEEecH-HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 298 GAQEYFGVTPDLT--TLGKIIGGG--LPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 298 ~~~~~~g~~pdi~--t~sK~l~~G--~~iG~~~~~~-~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
..+.-+..-.||+ +.+|-++|. .=.|.++++. ++.+.+... .....+ ....|.-+...+..|+.+ .-..++
T Consensus 192 ~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~-~~~~~G-~~l~p~dA~l~lRGlkTL--~~Rm~~ 267 (396)
T COG0626 192 VLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFA-QRANTG-AVLSPFDAWLLLRGLRTL--ALRMER 267 (396)
T ss_pred cccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHH-HHhhcC-CCCCHHHHHHHHhccchH--HHHHHH
Confidence 2222233335665 789999974 4456566555 444544210 000111 133455555444444332 334455
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeeE------------------EeeeceeEEEEEec
Q 011959 373 LNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTE 410 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~------------------v~~~g~~~~i~~~~ 410 (474)
..++...+.+.|++ ++.+.. ..+.|.|+.|++..
T Consensus 268 ~~~nA~~IA~~L~~----~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~ 319 (396)
T COG0626 268 HNENALKIAEFLAD----HPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKN 319 (396)
T ss_pred HHHHHHHHHHHHhc----CCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCC
Confidence 56666666666655 232211 22478899999864
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.7e-10 Score=103.74 Aligned_cols=167 Identities=19% Similarity=0.171 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCC
Q 011959 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~ 217 (474)
++-...|.++++.+-++. ..+.+.||..|+..|+.. ....++.||....-|-|.+..+-...
T Consensus 61 NPT~~vlE~RiAaLEGG~-aa~a~aSG~AA~~~ai~~--la~aGD~iVss~~LYGGT~~lf~~tl--------------- 122 (426)
T COG2873 61 NPTTDVLEERIAALEGGV-AALAVASGQAAITYAILN--LAGAGDNIVSSSKLYGGTYNLFSHTL--------------- 122 (426)
T ss_pred CchHHHHHHHHHHhhcch-hhhhhccchHHHHHHHHH--hccCCCeeEeeccccCchHHHHHHHH---------------
Confidence 455577888888776443 456778899999999984 33446778877777766443332210
Q ss_pred CCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCC
Q 011959 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 297 (474)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~ 297 (474)
+..+-++..+..+|++.+++.|++ ++++|.+|.+-|+.+.+.. +++|.++|++||++||+|...+. +
T Consensus 123 -~~~Gi~v~fvd~~d~~~~~~aI~~---nTkavf~EtigNP~~~v~D----ie~ia~iAh~~gvpliVDNT~at-----p 189 (426)
T COG2873 123 -KRLGIEVRFVDPDDPENFEAAIDE---NTKAVFAETIGNPGLDVLD----IEAIAEIAHRHGVPLIVDNTFAT-----P 189 (426)
T ss_pred -HhcCcEEEEeCCCCHHHHHHHhCc---ccceEEEEeccCCCccccC----HHHHHHHHHHcCCcEEEecCCCc-----c
Confidence 111224566666789999999984 7999999999999999998 99999999999999999998852 2
Q ss_pred ccccccCCCCcee--ehhhhcCC-CcceEEEEecHHHHHhh
Q 011959 298 GAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGRRDIMEMV 335 (474)
Q Consensus 298 ~~~~~~g~~pdi~--t~sK~l~~-G~~iG~~~~~~~i~~~~ 335 (474)
+.+.-+....||+ +++|.+|| |--+|.++...--.++-
T Consensus 190 yl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~ 230 (426)
T COG2873 190 YLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWT 230 (426)
T ss_pred eecchhhcCCCEEEEeecccccCCccccceEEEeCCccccc
Confidence 2233333445776 79999996 78888887655444433
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.8e-09 Score=101.61 Aligned_cols=341 Identities=15% Similarity=0.054 Sum_probs=179.0
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~ 178 (474)
.|||+.+-.++ +-..++..+||.. |. .|+ -++-..+|.+.+++++ +.+.++++.+|..+...+.++ +
T Consensus 42 V~IDLrSDTgT---~apS~~m~aAM~~----GDD~Y~-gdpSv~~Lee~vael~-G~E~alpthqGRgaE~Il~~~---~ 109 (467)
T TIGR02617 42 VFIDLLTDSGT---GAVTQSMQAAMMR----GDEAYS-GSRSYYALAESVKNIF-GYQYTIPTHQGRGAEQIYIPV---L 109 (467)
T ss_pred eEEECccCCCC---CCCCHHHHHHHHc----CCcccc-cCchHHHHHHHHHHHh-CCceEEECCCCchHHHHHHHh---h
Confidence 46898887432 2346778777765 42 233 3444567777777777 788999999999999999884 4
Q ss_pred cC--CcEEE------EEeCCCCCCc-hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC--C-CHHHHHHHHhcCC-C
Q 011959 179 TG--RERII------KFEGCYHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF--N-DVSALENLFENNK-G 245 (474)
Q Consensus 179 ~~--~~~ii------~~~~~yhg~~-~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~--~-d~~~le~~l~~~~-~ 245 (474)
.+ ++.++ ++...||-.+ -+....+|.....+..+ ... ......++ | |++.|++.|++++ +
T Consensus 110 ~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~--ea~-----~~~~~~~fkG~~dl~~le~~I~~~g~~ 182 (467)
T TIGR02617 110 IKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTK--EAF-----DTGVRYDFKGNFDLEGLERGIEEVGPN 182 (467)
T ss_pred cccccccccccccccccceEEEEecchHHHHHcCceeecccch--hhc-----ccccCCCCCCCcCHHHHHHHHhhcCCC
Confidence 33 12222 1122344333 23444455432221110 000 00011111 1 8999999998643 4
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc----Cc---cc-CCC-cc-c----cccCCCCcee-
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT----GF---RL-AYG-GA-Q----EYFGVTPDLT- 310 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~----g~---r~-g~~-~~-~----~~~g~~pdi~- 310 (474)
++..+.+.-.+|..|..+.+.+.+++++++|++||+.+++|-+-. -| |. +.. .. . +.+. ..|.+
T Consensus 183 ~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~-~aDsvt 261 (467)
T TIGR02617 183 NVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYK-YADMLA 261 (467)
T ss_pred CceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhc-cCCEEE
Confidence 566665555555544444456669999999999999999996541 01 00 100 00 0 1111 23544
Q ss_pred -ehhhhcCCCcceEEE-EecHH----HHHhhcCCCC-cccccCCCCChHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 011959 311 -TLGKIIGGGLPVGAY-GGRRD----IMEMVAPAGP-MYQAGTLSGNPLA-MTAGIHTLKRLKEPGTYEYLNKITGELTQ 382 (474)
Q Consensus 311 -t~sK~l~~G~~iG~~-~~~~~----i~~~~~~~~~-~~~~~t~~~~~~~-~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 382 (474)
|+||.++. |+|.+ +++++ +.+..+.... .-.+-||++-.-- +.|....|+..-+++++.+--+..++|.+
T Consensus 262 ~slsKglgA--pvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~ 339 (467)
T TIGR02617 262 MSAKKDAMV--PMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVN 339 (467)
T ss_pred EEcCCCCCC--cccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHH
Confidence 78898864 78776 55544 3333332111 1234466653222 22222345544456666666677788888
Q ss_pred HHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEe---ccc-------C------
Q 011959 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYF---APS-------Q------ 445 (474)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v---~~~-------~------ 445 (474)
+|.+. +++... ..|.-+.++-..- ..++....-|. ..++-.|. +-||-. ... .
T Consensus 340 ~L~~~----Gvpi~~-~Gghav~iDa~~~-lphip~~~fpa----~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~ 409 (467)
T TIGR02617 340 GLEEI----GVVCQQ-AGGHAAFVDAGKL-LPHIPADQFPA----HALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPC 409 (467)
T ss_pred HHHhC----CCcEEe-cCccEEEEehhhh-CCCCChhhCcH----HHHHHHHHHHcCcceEeecceecccCCCCCccCCC
Confidence 88764 444432 3333333322110 01111111122 33433333 445421 111 0
Q ss_pred -CcceEE---ecCCcHHHHHHHHHHHHHHHh
Q 011959 446 -FEAGFT---SLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 446 -~~~~~~---~~~~t~e~i~~~l~~l~~~~~ 472 (474)
...+|+ .-..|.+++|...+++..+.+
T Consensus 410 ~~el~RlaipRrvyt~~h~d~v~~~~~~~~~ 440 (467)
T TIGR02617 410 PAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_pred ccceeeeccccccccHhHHHHHHHHHHHHHh
Confidence 012343 246699999999999988764
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.4e-10 Score=117.61 Aligned_cols=233 Identities=10% Similarity=0.035 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccC-CCCCCCCC
Q 011959 139 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL-GLPDSPGV 217 (474)
Q Consensus 139 ~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~-~~~~~~g~ 217 (474)
....+..+..++.++.....+.+||.|.+|.+++. +..++++.|+++...|-+...++.++|..+..+ +.-...|+
T Consensus 205 G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~---a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~Gi 281 (755)
T PRK15029 205 GAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQ---ACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRYGI 281 (755)
T ss_pred cHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH---HhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCC
Confidence 33344444455556333455567777778887777 555666777788899999999999988754321 11111222
Q ss_pred CCCCCCceEEccCCCHHHHHHHHhcCCCCe--------EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011959 218 PKGATYETLTAPFNDVSALENLFENNKGEI--------AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (474)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~--------a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (474)
+.. +...+-+.+.+++.|+++++.. ++||+.|.+ -|.+.. +++|.++|+++|+.|++||+|
T Consensus 282 ~~~-----i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEAh 350 (755)
T PRK15029 282 IGP-----IYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY--DGVCYN----AKEAQDLLEKTSDRLHFDEAW 350 (755)
T ss_pred ccC-----CCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC--cceeeC----HHHHHHHHHhcCCeEEEECcc
Confidence 110 0000114889999998876543 566677755 477777 999999999999999999999
Q ss_pred cCc-ccCCCccc-ccc-----C-CCCc-eee--hhhhcCCCcc-eEEEEecHH--HH--HhhcCCCCcccccCCCCChHH
Q 011959 290 TGF-RLAYGGAQ-EYF-----G-VTPD-LTT--LGKIIGGGLP-VGAYGGRRD--IM--EMVAPAGPMYQAGTLSGNPLA 353 (474)
Q Consensus 290 ~g~-r~g~~~~~-~~~-----g-~~pd-i~t--~sK~l~~G~~-iG~~~~~~~--i~--~~~~~~~~~~~~~t~~~~~~~ 353 (474)
.+. +.+..+.. ... . ..+| +++ .-|.+++ +. .+++..+.. .+ +.+.. .+....|.|.+-+-
T Consensus 351 Gah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~a-lTQaS~LHv~~~~~~id~~r~~~--~l~~~qSTSPSY~L 427 (755)
T PRK15029 351 YGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQ--AYMMHATTSPLYAI 427 (755)
T ss_pred ccccccCccccccccccccccccCCCceEEEEchhhcccc-hhhhhhheeCCCccccCHHHHHH--HHHHHcCCCcHHHH
Confidence 554 44332221 111 1 2367 553 5688863 33 333333221 11 22221 12233455777777
Q ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHh
Q 011959 354 MTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAG 388 (474)
Q Consensus 354 ~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~ 388 (474)
++..-.+.+.++. ..+.++..+....+++.|.++.
T Consensus 428 mASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~ 465 (755)
T PRK15029 428 CASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY 465 (755)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 7766666666653 4567777888888888887653
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.5e-09 Score=95.68 Aligned_cols=331 Identities=16% Similarity=0.097 Sum_probs=190.1
Q ss_pred EEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHH-Hh---c---CCC-C--CCCHHHHHHHHHHHhhCC-CCCeEEEeC
Q 011959 94 WDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM-KK---G---TSF-G--APCLLENVLAEMVISAVP-SIEMVRFVN 162 (474)
Q Consensus 94 ~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~-~~---~---~~~-~--~~~~~~~~la~~l~~~~~-~~~~v~~~~ 162 (474)
-+.+|-.||| | |.||..++.+.+...+.. +. + ..+ + ..-.+-+.|..+|+-+.+ ...+|.+++
T Consensus 27 ~lp~~viyLd---g---nSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~d 100 (407)
T COG3844 27 ALPGGVIYLD---G---NSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTD 100 (407)
T ss_pred cCCCCeEEee---c---cccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeC
Confidence 3456667776 3 678865545555444433 22 1 111 0 112333455555555554 466888888
Q ss_pred CHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEcc-CCCHHHHHHHHh
Q 011959 163 SGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP-FNDVSALENLFE 241 (474)
Q Consensus 163 sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~-~~d~~~le~~l~ 241 (474)
|-+--+.-.|-.+...+.++.||++++..+..-.... .++....... +.+. -..++++++.+.
T Consensus 101 tts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a---------------~g~~~~~~~~-~~~~~~~~P~~~~~~~~ 164 (407)
T COG3844 101 TTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIA---------------EGLADLLGIG-YDLEGVIAPRALEEAIT 164 (407)
T ss_pred CcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhh---------------cchhhhhccc-ccceeeeChHHHHHhhc
Confidence 7766666666655455657888888876544221111 0110000000 0000 014667888776
Q ss_pred cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCcccc--ccCCCCceeehhhhcCCC
Q 011959 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQE--YFGVTPDLTTLGKIIGGG 319 (474)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~--~~g~~pdi~t~sK~l~~G 319 (474)
++++.|++..++--+|.... +.+|-+++++||++++.|=+|+ .| -...+ ..|++--+-|-=|-+++|
T Consensus 165 ---dd~AvV~L~~V~y~TGql~d----m~aiT~~AH~~galv~wDLAHs---aG-avp~~Lh~~gaDfaigcsyKYLNgG 233 (407)
T COG3844 165 ---DDVAVVLLSHVNYKTGQLLD----MRAITALAHQHGALVGWDLAHS---AG-AVPVDLHAAGADFAIGCSYKYLNGG 233 (407)
T ss_pred ---cceEEEEeccccccccceee----HHHHHHHHHhcCceEEeehhcc---cC-CcceeecccCCCeeeeeeceeccCC
Confidence 58999999999999999999 9999999999999999999995 11 11112 223333345667888865
Q ss_pred c-ceEEEEecHHHHHhhcC--------CCCcccc------------cCCCCChHHHHHHHHHHHHhcC---CCHHHHHHH
Q 011959 320 L-PVGAYGGRRDIMEMVAP--------AGPMYQA------------GTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNK 375 (474)
Q Consensus 320 ~-~iG~~~~~~~i~~~~~~--------~~~~~~~------------~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~ 375 (474)
- -.+++...++..+...+ .+++... -.-..+.+++++...+|++..+ .+++++--.
T Consensus 234 PGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSla 313 (407)
T COG3844 234 PGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLA 313 (407)
T ss_pred CCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhH
Confidence 3 34444444333332221 0111000 0012244566666678887665 445555556
Q ss_pred HHHHHHHHHHHHhhhcCCeeEEe----eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE
Q 011959 376 ITGELTQGIIDAGKKAGHAICGG----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT 451 (474)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~ 451 (474)
+.+++.+.++.....+++....+ .+|.-+.+.. | ....+++.|.++||+.--.....+|+
T Consensus 314 LTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~h-------------p---~~~~V~qaLi~rGVigD~R~P~vlRf 377 (407)
T COG3844 314 LTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYH-------------P---HGYQVMQALIDRGVIGDFREPDVLRF 377 (407)
T ss_pred HHHHHHHHHHhccccCCcEEeccchhhhccceeeEec-------------C---cHHHHHHHHHHcCccccccCCCeeee
Confidence 66777766666544444322111 1232222222 1 23678999999999865444445565
Q ss_pred ---ecCCcHHHHHHHHHHHHHHHhh
Q 011959 452 ---SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 452 ---~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++..+-+|+=.+++.|+++++.
T Consensus 378 gftPlY~~~~DVw~AV~~L~evL~t 402 (407)
T COG3844 378 GFTPLYVSFVDVWDAVDALEEVLDT 402 (407)
T ss_pred cCccceechhHHHHHHHHHHHHHHh
Confidence 6788999999999999999875
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-09 Score=104.77 Aligned_cols=311 Identities=11% Similarity=-0.007 Sum_probs=180.6
Q ss_pred CCHHHHHHHHHHHHhc--CC-------CCC--CCHHHHHHHHHHHhhCCC---CCeEEEeCCHHHHHHHHHHHhHhhcCC
Q 011959 116 ADDQVLAALGETMKKG--TS-------FGA--PCLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLARAFTGR 181 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~--~~-------~~~--~~~~~~~la~~l~~~~~~---~~~v~~~~sGseA~~~al~~ar~~~~~ 181 (474)
-+++|++++.+.+.+. +. +.. ..+...+..+.|.+.+.- .+-+++..|||.++++++.. ...++
T Consensus 18 lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~n--l~~~~ 95 (365)
T PLN02452 18 LPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLN--LCKPG 95 (365)
T ss_pred CCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHh--cCCCC
Confidence 3789999988876431 11 111 134556677777777742 23345568899999999984 23355
Q ss_pred cEEEEEeCCCCCCchhHHHhc-CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCC
Q 011959 182 ERIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (474)
Q Consensus 182 ~~ii~~~~~yhg~~~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (474)
+++++...+++|....-.+.. |...... ....... .. ..+++++ +.+ ++...|.+..+...+|
T Consensus 96 ~~~l~~~~G~fg~r~~~~a~~~g~~~~~~-~~~~~~~--------~~--~~~~~~~----~~~-~~~~~v~~~hnETstG 159 (365)
T PLN02452 96 DKADFVVTGSWSKKAAKEAKKYCKTNVIA-SGKDEKY--------TK--IPSVSEW----ELT-PDAKFVHICANETIHG 159 (365)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCCcEEE-ecCCCCC--------CC--CCChHHc----CCC-CCCcEEEECCCCCCCc
Confidence 778888777777544333322 2211100 0000000 00 0134443 322 3577788887777788
Q ss_pred cc-cCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcC-CCcceEEEEecHHHHHhhcCC
Q 011959 261 FI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPA 338 (474)
Q Consensus 261 ~i-~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i~~~~~~~ 338 (474)
+. .+ ++++. ++++|+|-+++ + .+.....+.+|+ |+.+..|.+| .| +|.+++++++++.+...
T Consensus 160 v~~~~----~~~i~------~~~lvVDa~Ss-~-g~~pidv~~~~v--~~~saqK~lGP~G--l~~v~vr~~~l~~~~~~ 223 (365)
T PLN02452 160 VEFKD----YPDVG------NVPLVADMSSN-F-LSKPVDVSKYGV--IYAGAQKNVGPSG--VTIVIIRKDLIGNARPI 223 (365)
T ss_pred EecCc----ccccC------CCeEEEECCcc-c-cCcccCHHHcCE--EEEecccccCCCC--eEEEEEcHHHHhhcccC
Confidence 84 55 44442 38999999885 1 122334445555 6678889997 34 89999999998776532
Q ss_pred CCcc--------cccCC-CCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeec-eeE
Q 011959 339 GPMY--------QAGTL-SGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS-GMF 404 (474)
Q Consensus 339 ~~~~--------~~~t~-~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g-~~~ 404 (474)
.+.+ ..+++ +.|..++.+..++|+.+.++ ...++.+++.+++++.|++...-+....+...+. ..+
T Consensus 224 ~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~v 303 (365)
T PLN02452 224 TPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNV 303 (365)
T ss_pred CCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEE
Confidence 1111 11233 44556677777889988753 4555666666667776665310011111100011 122
Q ss_pred EEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.|.+ ++.....+|.+.+.++|++..++. ...+|++ -.++.++++.+++.++++-++
T Consensus 304 sF~~-------------~~~~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 304 PFTL-------------GGSELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred EEEc-------------CCchhHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 2222 122356789999999999987763 2246775 467999999999999987654
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-09 Score=101.61 Aligned_cols=301 Identities=15% Similarity=0.139 Sum_probs=170.4
Q ss_pred CHHHHHHHHHHHHh-cCCCC------CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEE
Q 011959 117 DDQVLAALGETMKK-GTSFG------APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIK 186 (474)
Q Consensus 117 ~p~v~~a~~~~~~~-~~~~~------~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~ 186 (474)
+.++++.....+.. +-+.| +..-.+..+|+.+.++-+ +++.|++|.|.|.|+...|++..+ ..++.|++
T Consensus 88 p~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~-~~~~Gvli 166 (475)
T KOG0258|consen 88 PTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIA-GKKTGVLI 166 (475)
T ss_pred CHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhc-CCCCceEe
Confidence 45566666666655 21222 345678889999888764 478999999999999999997533 25677888
Q ss_pred EeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC---CCeEEEEEccccCCCCccc
Q 011959 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILEPVVGNSGFIA 263 (474)
Q Consensus 187 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~a~vi~ep~~~~~G~i~ 263 (474)
.-|-|.-++ ..++..|......-+....++.. |.++|++.+++.. +-.++|+++|.+ ++|.+.
T Consensus 167 PiPQYPLYs-Ati~l~~~~~v~YyLdEe~~W~l------------d~~el~~~~~eA~k~i~~r~lvvINPGN-PTGqvl 232 (475)
T KOG0258|consen 167 PIPQYPLYS-ATISLLGGTQVPYYLDEESNWSL------------DVAELERSVDEARKGINPRALVVINPGN-PTGQVL 232 (475)
T ss_pred ecCCCchhH-HHHHHhCCcccceeeccccCCCC------------CHHHHHHHHHHHhccCCceEEEEECCCC-ccchhh
Confidence 888886543 34444333222111111112111 7888888876532 234677788864 466666
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEeccccCc-c-cC-CCcccc----ccC-CCCc---ee---ehhhhcC--CCcceEEE-E
Q 011959 264 PKPDFLNAIRRITKENGALLIFDEVMTGF-R-LA-YGGAQE----YFG-VTPD---LT---TLGKIIG--GGLPVGAY-G 326 (474)
Q Consensus 264 ~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r-~g-~~~~~~----~~g-~~pd---i~---t~sK~l~--~G~~iG~~-~ 326 (474)
..+. +++|..+|.++|++|+.||||-.= . .+ +++.+. ++| ..+| +. +.||++. .|.|-|++ +
T Consensus 233 s~e~-ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv 311 (475)
T KOG0258|consen 233 SEEN-IEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMES 311 (475)
T ss_pred cHHH-HHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeec
Confidence 5444 999999999999999999999433 2 33 333321 222 2343 22 4689887 58999998 3
Q ss_pred e--cHHHHHhhcCCCCcccccCCCCChHHHHHHHH----------HHH--HhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 327 G--RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH----------TLK--RLKEPGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 327 ~--~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~a----------al~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
. .+++.+.+.+...... +.+..+++..-. ..+ .-+.+...+.++++.+.+.+.++++ .
T Consensus 312 ~n~~prv~~qi~Kl~si~l----c~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~----~ 383 (475)
T KOG0258|consen 312 LNRDPRVKQQIKKLASIKL----CPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSL----E 383 (475)
T ss_pred ccCChhHHHHHHHHHhhhh----cCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhc----C
Confidence 3 3455444432111000 111111111100 011 1112566677777777777766654 4
Q ss_pred CeeEEeeeceeEEEEEecCCCcCcccc----cccchHHHHHHHHHHH-HCCeEecccC
Q 011959 393 HAICGGYISGMFGFFFTEGPVYNFEDA----KKSETTKFARFYRGML-EEGVYFAPSQ 445 (474)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~-~~Gv~v~~~~ 445 (474)
.+.+-+..|.|..+.-..-+...+..+ ..|| .-.+..|+ .-||.+.|+.
T Consensus 384 gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD----~FYc~~LLe~tGIcvVPGS 437 (475)
T KOG0258|consen 384 GISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPD----EFYCLKLLEATGICVVPGS 437 (475)
T ss_pred ceeeccCccceeecccccCCHHHHHHHHHhCCCCc----HHHHHHHHHhcCeEEecCC
Confidence 455667788887764322221111111 1122 12345555 4599999874
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.6e-10 Score=107.47 Aligned_cols=188 Identities=16% Similarity=0.170 Sum_probs=124.7
Q ss_pred HHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCC
Q 011959 141 ENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKG 220 (474)
Q Consensus 141 ~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~ 220 (474)
+..|.+.+++.. +.+.++.++||..|...+++. .....++||.++..|.|. ...+..... .-|
T Consensus 79 ~~~le~~iaal~-ga~~~l~fsSGmaA~~~al~~--L~~~g~~iV~~~~~Y~gT-~~~l~~~~~---------~~g---- 141 (409)
T KOG0053|consen 79 RDVLESGIAALE-GAAHALLFSSGMAAITVALLH--LLPAGDHIVATGDVYGGT-LRILRKFLP---------KFG---- 141 (409)
T ss_pred hHHHHHHHHHHh-CCceEEEecccHHHHHHHHHH--hcCCCCcEEEeCCCcccH-HHHHHHHHH---------HhC----
Confidence 344555555554 567799999999999999985 345678899999999884 333322111 001
Q ss_pred CCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccc
Q 011959 221 ATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQ 300 (474)
Q Consensus 221 ~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~ 300 (474)
.....+...|++.+++.+++ ++.+|.+|++-|+...+.. +++|+++|+++|+++|+|+...+. .-+
T Consensus 142 --ie~~~vd~~~~~~~~~~i~~---~t~~V~~ESPsNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~p-----~~~ 207 (409)
T KOG0053|consen 142 --GEGDFVDVDDLKKILKAIKE---NTKAVFLESPSNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGSP-----YNQ 207 (409)
T ss_pred --ceeeeechhhHHHHHHhhcc---CceEEEEECCCCCcccccc----HHHHHHHHhhCCCEEEEeCCcCcc-----ccc
Confidence 12333333356666666653 7999999999999888888 999999999999999999998643 122
Q ss_pred cccCCCCcee--ehhhhcCCC--cceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHH
Q 011959 301 EYFGVTPDLT--TLGKIIGGG--LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK 362 (474)
Q Consensus 301 ~~~g~~pdi~--t~sK~l~~G--~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~ 362 (474)
+-+..-.||+ +.+|.|+|. +=.|.++.+ +++...+.. ....--+..+|+.+.-...-++
T Consensus 208 ~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~---~~~~lg~~~~p~~~~ll~Rglk 271 (409)
T KOG0053|consen 208 DPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKF---LQEDLGWCEDPFDLFLLSRGLK 271 (409)
T ss_pred ChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHH---HHHHhcCCCCHHHHHHHhcCcc
Confidence 2333346877 588999974 445666775 677666652 1122234567777665554443
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-08 Score=98.27 Aligned_cols=292 Identities=11% Similarity=0.034 Sum_probs=158.1
Q ss_pred CHHHHHHHHHHHhhCCC---CCeEEEeCCHHHHHHHHHHHhHhh-cCCcEEEEEeCCCCCCchh--HHHhcCCC-CccCC
Q 011959 138 CLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLARAF-TGRERIIKFEGCYHGHADP--FLVKAGSG-VATLG 210 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~---~~~v~~~~sGseA~~~al~~ar~~-~~~~~ii~~~~~yhg~~~~--~~~~~g~~-~~~~~ 210 (474)
.+...+..+.|.+.+.. .+-++++.|||.++|+++.. .. .+++++++. +++|.... .....|.+ +.
T Consensus 38 ~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~n--l~~~~g~~vLv~--g~FG~r~~~eia~~~g~~~v~--- 110 (374)
T TIGR01365 38 KEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWS--MLGCRGVDVLAW--ESFGKGWVTDVTKQLKLPDVR--- 110 (374)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHH--cCCCCCCeEEEE--CHHHHHHHHHHHHhcCCCCcE---
Confidence 34556667777777752 22366799999999999994 22 234567764 35554422 22222331 22
Q ss_pred CCCCCCCCCCCCCceEEccCC---CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH-hCCEEEEe
Q 011959 211 LPDSPGVPKGATYETLTAPFN---DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFD 286 (474)
Q Consensus 211 ~~~~~g~~~~~~~~~~~~~~~---d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-~g~llI~D 286 (474)
.+..+++ |+++++. + .. |.+..+-..+|+..| ++ +++++ +++++|+|
T Consensus 111 --------------~l~~~~g~~~~~~~ve~--~---~~---v~~vhnETSTGv~np----v~---~i~~~~~~~lliVD 161 (374)
T TIGR01365 111 --------------VLEAEYGKLPDLKKVDF--K---ND---VVFTWNGTTSGVRVP----NG---DFIPADREGLTICD 161 (374)
T ss_pred --------------EEcCCCCCCCCHHHcCC--C---CC---EEEecCCCchheecc----cc---ccccccCCCcEEEE
Confidence 2223332 5666652 1 12 445455556788888 44 44443 58999999
Q ss_pred ccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCC-----c--------------cccc
Q 011959 287 EVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGP-----M--------------YQAG 345 (474)
Q Consensus 287 Ev~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~-----~--------------~~~~ 345 (474)
-+-+ | .+..+..+ + .|++ +..|+|++---+|.++.+++.++....... . ....
T Consensus 162 avSs-~-g~~~l~~d--~--iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 235 (374)
T TIGR01365 162 ATSA-A-FAQDLDYH--K--LDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGS 235 (374)
T ss_pred ccch-h-cCCCCChh--H--CcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCC
Confidence 7774 2 11222222 2 5655 567999842238888999988876552111 0 0112
Q ss_pred CC-CCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeece-eEEEEEecCCCcCcccc
Q 011959 346 TL-SGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDA 419 (474)
Q Consensus 346 t~-~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~ 419 (474)
|. ..+..+..+...+|+.+.+ ++..++.+++.+.+++.++++..-.....+-..... ...+.+..+.+... .
T Consensus 236 t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~--~ 313 (374)
T TIGR01365 236 TINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDAL--D 313 (374)
T ss_pred CCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCcccccc--c
Confidence 33 2333445555566665544 345555666666666666665311111100001122 12222211100000 0
Q ss_pred cccchHHHHHHHHHHHHCCeEecccCC----cceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 420 KKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
..+......++.+.|.++||.+.++.. ..+|+. -.++.+|++.+++.|+=+.++
T Consensus 314 ~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~~ 373 (374)
T TIGR01365 314 EDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFAL 373 (374)
T ss_pred cchhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHhc
Confidence 001111136788999999999887643 456773 567999999999999877654
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-07 Score=95.57 Aligned_cols=268 Identities=17% Similarity=0.104 Sum_probs=146.1
Q ss_pred CCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHh-cCCCCccCCCCCCCCCCCCCCCceEEccCC------CHH
Q 011959 162 NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFN------DVS 234 (474)
Q Consensus 162 ~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~------d~~ 234 (474)
-||+.||.+++.. .+.+++.|+..+..+-|+....... .+..+ ...++ ..+.+.++.| |.+
T Consensus 221 ~SGs~AN~aV~~A--Ll~PGD~IL~ldl~~GGHlshg~~~~~g~~v------s~sG~----~~~~vpY~~d~~~g~IDyd 288 (586)
T PLN02271 221 YSCTSANFAVYTG--LLLPGDRIMGLDSPSGGHMSHGYYTPGGKKV------SGASI----FFESLPYKVNPQTGYIDYD 288 (586)
T ss_pred ccHHHHHHHHHHH--hcCCCCEEEEecCCCCCchhccccccccccc------ccccc----eEEEEEcccccccCccCHH
Confidence 3899999999973 2445677888766544432211100 00000 00010 0112222232 789
Q ss_pred HHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCceee-
Q 011959 235 ALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT- 311 (474)
Q Consensus 235 ~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~t- 311 (474)
++++..... ++++|++...... ...+ +++++++|+++|++|++|-+| .|+ -.+ .+... +. ..|++|
T Consensus 289 ~lek~a~~~--rPKLII~g~Sayp--r~~D----~~~i~eIAdevGA~LmvD~AH~aGLIa~g-~~~sP-~~-~aDvvt~ 357 (586)
T PLN02271 289 KLEEKALDF--RPKILICGGSSYP--REWD----YARFRQIADKCGAVLMCDMAHISGLVAAK-ECVNP-FD-YCDIVTS 357 (586)
T ss_pred HHHHHhhhc--CCeEEEECchhcc--CcCC----HHHHHHHHHHcCCEEEEECcccccccccC-cCCCC-Cc-CCcEEEe
Confidence 999865543 6788888664433 3456 999999999999999999999 566 222 11111 11 357774
Q ss_pred -hhhhcCCCcceEEEEecHH--------------------HHHhhcCC-CCcccccCCCCChHHHHHHHHHHHHhcC---
Q 011959 312 -LGKIIGGGLPVGAYGGRRD--------------------IMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKE--- 366 (474)
Q Consensus 312 -~sK~l~~G~~iG~~~~~~~--------------------i~~~~~~~-~~~~~~~t~~~~~~~~aaa~aal~~~~~--- 366 (474)
..|+|.|. +-|.++.+++ +.+.+... -+.+++++.. -.+++-..+++.+..
T Consensus 358 TTHKtLrGP-rGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn---~~IAalAvalkea~~~ef 433 (586)
T PLN02271 358 TTHKSLRGP-RGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHN---NHIAALAIALKQVATPEY 433 (586)
T ss_pred CCcccCCCC-CceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhH---HHHHHHHHHHHHHhChHH
Confidence 56999752 3366666653 33333321 1222333221 123344455665544
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee-eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC
Q 011959 367 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ 445 (474)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~ 445 (474)
.++.+++.++.+.|.+.|.+. ++.....+ ...++.+++.... .......+.|-+.||.+....
T Consensus 434 k~Ya~QVv~NAkaLA~~L~~~----G~~vv~ggTdnHlvLvDl~~~g------------~~G~~ae~~Le~~~I~~Nkn~ 497 (586)
T PLN02271 434 KAYMQQVKKNAQALASALLRR----KCRLVTGGTDNHLLLWDLTTLG------------LTGKNYEKVCEMCHITLNKTA 497 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHC----CCeEeeCCCCcceeeecCcccC------------CCHHHHHHHHHHcCeEecccc
Confidence 346667777788887777664 32211111 1234444442210 012344455556788875431
Q ss_pred ---------CcceEE------ecCCcHHHHHHHHHHHHHHHh
Q 011959 446 ---------FEAGFT------SLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 446 ---------~~~~~~------~~~~t~e~i~~~l~~l~~~~~ 472 (474)
...+|+ .....++|++++.+.|.++++
T Consensus 498 iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 498 IFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 123555 356678899988888888764
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-10 Score=115.43 Aligned_cols=231 Identities=15% Similarity=0.113 Sum_probs=140.2
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccC-CCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL-GLPDS 214 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~-~~~~~ 214 (474)
+.....+-.+..++.+ +.++.+| +||.|.+|.+++. +..++++.|.++...|-+...++.++|..+..+ +....
T Consensus 64 p~G~I~eAe~~aA~~f-GAd~t~flvnGsT~g~~a~i~---a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~ 139 (417)
T PF01276_consen 64 PEGIIKEAEELAARAF-GADKTFFLVNGSTSGNQAMIM---ALCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNE 139 (417)
T ss_dssp TBTHHHHHHHHHHHHH-TESEEEEESSHHHHHHHHHHH---HHTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-T
T ss_pred CccHHHHHHHHHHHhc-CCCeEEEEecCchHHHHHHHH---HhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCccc
Confidence 4444455555555566 5566555 5666667888887 566777778888999999988998888643221 11111
Q ss_pred CCCCCCCCCceEEccC--CCHHHHHHHHhcCCCCeE---EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011959 215 PGVPKGATYETLTAPF--NDVSALENLFENNKGEIA---AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (474)
Q Consensus 215 ~g~~~~~~~~~~~~~~--~d~~~le~~l~~~~~~~a---~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (474)
.|++ ..++. -+.+.+++.|+++++..+ +||+.|.+ -|.+.. +++|.++|+++++.|++||+|
T Consensus 140 ~gi~-------~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEAh 206 (417)
T PF01276_consen 140 YGII-------GGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY--YGVCYD----IKEIAEICHKHGIPLLVDEAH 206 (417)
T ss_dssp TS-B-------EEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T--TSEEE-----HHHHHHHHCCTECEEEEE-TT
T ss_pred cCCc-------cCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC--CeEEEC----HHHHHHHhcccCCEEEEEccc
Confidence 1221 11111 135899999998876655 77777765 478888 999999999999999999999
Q ss_pred cCc-ccCCCccccccCCCCc-------ee--ehhhhcCCCcceEEEEecHHH---HHhhcCCCCcccccCCCCChHHHHH
Q 011959 290 TGF-RLAYGGAQEYFGVTPD-------LT--TLGKIIGGGLPVGAYGGRRDI---MEMVAPAGPMYQAGTLSGNPLAMTA 356 (474)
Q Consensus 290 ~g~-r~g~~~~~~~~g~~pd-------i~--t~sK~l~~G~~iG~~~~~~~i---~~~~~~~~~~~~~~t~~~~~~~~aa 356 (474)
.+. +.. .+.........| ++ +.-|.+++=-..+++..+.+. .+.+.. .+....|.|.+-+-++.
T Consensus 207 Gah~~F~-~lp~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~--~l~~~~TTSPSY~lmAS 283 (417)
T PF01276_consen 207 GAHFGFH-PLPRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNE--ALSMHQTTSPSYPLMAS 283 (417)
T ss_dssp -TTGGCS-GGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHH--HHHHHS-SS--HHHHHH
T ss_pred cccccCC-CCccchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHH--HHHHHcCCChHHHHHHH
Confidence 544 333 222233344455 55 466988732245666444331 233321 12234456777777777
Q ss_pred HHHHHHHhc-C--CCHHHHHHHHHHHHHHHHHHH
Q 011959 357 GIHTLKRLK-E--PGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 357 a~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~~ 387 (474)
.-.+.+.++ . ..++++..++.+.+|+.|++.
T Consensus 284 lD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~ 317 (417)
T PF01276_consen 284 LDVARAQMEEEEGRELLEEAIELAEEFRKKINRL 317 (417)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 777777773 2 568888889999999999663
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.1e-09 Score=107.93 Aligned_cols=311 Identities=11% Similarity=0.016 Sum_probs=168.4
Q ss_pred CHHHHHHHHHHHhhCCCCC-eEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhH-HHhcCCCCc-cCCCCCC
Q 011959 138 CLLENVLAEMVISAVPSIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF-LVKAGSGVA-TLGLPDS 214 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~~-~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~-~~~~g~~~~-~~~~~~~ 214 (474)
+....+-.+..++.+ +.+ ..+++||.|.+|.+++. +..++++.|+++...|-+.... +.++|..+. ..+.-..
T Consensus 173 eG~i~eAq~~AA~~f-gAd~tyFlvNGTS~gn~a~i~---a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~ 248 (720)
T PRK13578 173 EGAAKDAQKHAAKVF-NADKTYFVLNGTSASNKVVTN---ALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNP 248 (720)
T ss_pred ChHHHHHHHHHHHHh-CCCceEEEeCChhHHHHHHHH---HhcCCCCEEEeecccHHHHHHHHHHHcCCeEEEeeccccc
Confidence 333344444455556 455 45567777778888887 5667777888899999887764 888776432 2111111
Q ss_pred CCCCCCCCCceEEccCC--CHHHHHHHHhcC-CC-------CeEEEEEccccCCCCcccCCHHHHHHHHHH-HHHhCCEE
Q 011959 215 PGVPKGATYETLTAPFN--DVSALENLFENN-KG-------EIAAIILEPVVGNSGFIAPKPDFLNAIRRI-TKENGALL 283 (474)
Q Consensus 215 ~g~~~~~~~~~~~~~~~--d~~~le~~l~~~-~~-------~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l-~~~~g~ll 283 (474)
.|++. .++.. +.+.+++.|+++ ++ -.++||+.|.+ .|.+.. ++.|.++ |++++ .|
T Consensus 249 ~Gi~g-------~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY--dG~~yd----i~~I~~~~~h~~~-~l 314 (720)
T PRK13578 249 FGFIG-------GIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY--DGTIYN----ARQVVDKIGHLCD-YI 314 (720)
T ss_pred cCCcC-------CCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC--cceeec----HHHHHHHhhccCC-cE
Confidence 22211 11111 357799999877 32 13456666655 477777 8899998 78888 99
Q ss_pred EEeccccCc-ccCCC---ccccccCCCCc----eee--hhhhcCCCc-ceEEEEecHHHH---------HhhcCCCCccc
Q 011959 284 IFDEVMTGF-RLAYG---GAQEYFGVTPD----LTT--LGKIIGGGL-PVGAYGGRRDIM---------EMVAPAGPMYQ 343 (474)
Q Consensus 284 I~DEv~~g~-r~g~~---~~~~~~g~~pd----i~t--~sK~l~~G~-~iG~~~~~~~i~---------~~~~~~~~~~~ 343 (474)
++||+|.+. +.... +........+| ++| .-|.+++ + ..+++..+...+ +.+.. .+..
T Consensus 315 lvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~a-lTQaS~LHvk~~~i~g~~~~v~~~r~~~--al~m 391 (720)
T PRK13578 315 LFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAG-FSQTSQIHKKDNHIKGQARYCPHKRLNN--AFML 391 (720)
T ss_pred EEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchh-hhhHhhhhcCCcccccccccCCHHHHHH--HHHH
Confidence 999999655 43322 11111233455 554 5587763 3 234443332111 12221 1112
Q ss_pred ccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCe--eEEee-------------------
Q 011959 344 AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA--ICGGY------------------- 399 (474)
Q Consensus 344 ~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~v~~------------------- 399 (474)
..|.|.+-+-++..-.+-..++. ..+.++..+....+|+.|.+....+.+. ..+.+
T Consensus 392 ~qSTSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~ 471 (720)
T PRK13578 392 HASTSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFS 471 (720)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccc
Confidence 33445555555544444444432 5677778888888888883332211111 00000
Q ss_pred ---eceeEEEEE------ecCCCcCcccccccchH-----------HHHHHHHHHHHCCeEecccCCcceE--EecCCcH
Q 011959 400 ---ISGMFGFFF------TEGPVYNFEDAKKSETT-----------KFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSS 457 (474)
Q Consensus 400 ---~g~~~~i~~------~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~Gv~v~~~~~~~~~--~~~~~t~ 457 (474)
.-...++.- .-++.+-... .+.-. -...+.+.|.++||.+.-.+...+. ++...|+
T Consensus 472 ~~p~~~whgf~~~~~~~~~lDP~KltI~--t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~ 549 (720)
T PRK13578 472 FEPGEKWHGFEGYAEDQYFVDPCKLLLT--TPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDM 549 (720)
T ss_pred cccCccccccccccccccccCCceEEEE--cCCcCcccccccccCccHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCH
Confidence 000000000 0000000000 01000 0356788888889998877655443 3678899
Q ss_pred HHHHHHHHHHHHHH
Q 011959 458 DDIQHTITAAEKVL 471 (474)
Q Consensus 458 e~i~~~l~~l~~~~ 471 (474)
++++.++++|.++-
T Consensus 550 ~~~~~Lv~aL~~f~ 563 (720)
T PRK13578 550 AKLQQLVAMLARFE 563 (720)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.5e-08 Score=103.53 Aligned_cols=311 Identities=10% Similarity=-0.004 Sum_probs=173.9
Q ss_pred CHHHHHHHHHHHhhCCCCCeE-EEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccC-CCCCCC
Q 011959 138 CLLENVLAEMVISAVPSIEMV-RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL-GLPDSP 215 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~~~v-~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~-~~~~~~ 215 (474)
+....+-.+..++.+ +.++. +++||.|.+|.+++. +..++++.|+++...|-+...++.++|..+..+ +.-...
T Consensus 194 ~G~i~eAe~~aA~~f-gAd~tyfvvNGTS~~n~av~~---a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~ 269 (713)
T PRK15399 194 TGPHLEAEEYIARTF-GAEQSYIVTNGTSTSNKIVGM---YAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNAL 269 (713)
T ss_pred ChHHHHHHHHHHHHh-CCCcEEEEeCChHHHHHHHHH---HhcCCCCEEEeecccHHHHHHHHHHcCCeeEEeccccccc
Confidence 334444445555556 55555 556666778888887 556777788889999998888888888743321 111112
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCC---eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEE-EEeccccC
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGE---IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL-IFDEVMTG 291 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~---~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~ll-I~DEv~~g 291 (474)
|++.... ... + +.+.+++.|+++++. .++||+.|.+ .|.+.. ++.|.++| |+.+ ++||+|.+
T Consensus 270 Gi~g~I~--~~~--~-~~e~I~~~i~~~p~~~~p~~vvit~pTY--dGi~yd----~~~I~~~~---g~~~ilvDEAhga 335 (713)
T PRK15399 270 GILGGIP--RRE--F-TRDSIEEKVAATTQAQWPVHAVITNSTY--DGLLYN----TDWIKQTL---DVPSIHFDSAWVP 335 (713)
T ss_pred CCcCCCC--hhh--c-cHHHHHHHHHhCCCcCCceEEEEECCCC--CceeeC----HHHHHHHh---CCCEEEEeccchh
Confidence 2211100 000 0 458999999987643 4677777754 577777 77788887 6766 59999966
Q ss_pred c-ccCCCc----cccccCCCCcee-----ehhhhcCCCc-ceEEEEecHHHH-HhhcCCCCcccccCCCCChHHHHHHHH
Q 011959 292 F-RLAYGG----AQEYFGVTPDLT-----TLGKIIGGGL-PVGAYGGRRDIM-EMVAPAGPMYQAGTLSGNPLAMTAGIH 359 (474)
Q Consensus 292 ~-r~g~~~----~~~~~g~~pdi~-----t~sK~l~~G~-~iG~~~~~~~i~-~~~~~~~~~~~~~t~~~~~~~~aaa~a 359 (474)
. +....+ +.. .+-.+|.+ +.-|.+++ + ..+++..+..+- +.+.. .+....|.|.+-+.++..-.
T Consensus 336 h~~F~p~~~~~sam~-~~~~aD~~i~~tQStHKtL~a-lTQaS~iHvk~~vd~~~~n~--a~~m~~STSPsY~LmASLD~ 411 (713)
T PRK15399 336 YTHFHPIYQGKSGMS-GERVPGKVIFETQSTHKMLAA-FSQASLIHIKGEYDEETFNE--AFMMHTSTSPSYPIVASVET 411 (713)
T ss_pred hhhcCcccCCcChhh-CCCCCCeeeeeeeehhccccc-cchheeeeecCCCCHHHHHH--HHHHHcCCCcHHHHHHHHHH
Confidence 5 433211 111 11135655 46688863 3 345554433221 12221 12233344666666666666
Q ss_pred HHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcC-CeeEEee------ecee--------EEEE-----E-ecCCCcC
Q 011959 360 TLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG-HAICGGY------ISGM--------FGFF-----F-TEGPVYN 415 (474)
Q Consensus 360 al~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~v~~------~g~~--------~~i~-----~-~~~~~~~ 415 (474)
+...++. ..+.++..+....+|+.|.++..... ....+-+ ...+ .++. . .-++.+-
T Consensus 412 a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~Kl 491 (713)
T PRK15399 412 AAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKV 491 (713)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceE
Confidence 6666652 56778888888889988877532110 0000000 0000 0000 0 0001000
Q ss_pred ccccc--------ccchHHHHHHHHHHHHCCeEecccCCcceE--EecCCcHHHHHHHHHHHHHH
Q 011959 416 FEDAK--------KSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 416 ~~~~~--------~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~--~~~~~t~e~i~~~l~~l~~~ 470 (474)
..... .........+.+.|.++||.+.-.+...+. ++...|+++++.+++.|.++
T Consensus 492 tI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f 556 (713)
T PRK15399 492 TILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEF 556 (713)
T ss_pred EEEecCcccccccccCCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 00000 001122456778888999998877655443 36788999999999998866
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-07 Score=89.76 Aligned_cols=308 Identities=16% Similarity=0.168 Sum_probs=171.4
Q ss_pred CCHHHHHHHHHHHHh----c---CC-CCC---CCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcE
Q 011959 116 ADDQVLAALGETMKK----G---TS-FGA---PCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRER 183 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~----~---~~-~~~---~~~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ 183 (474)
..|.|.+|.-..+.+ | .. |++ .+..+.-..++..++| +.+.+-+ -.||+.||.+++.. ...+++.
T Consensus 38 ~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LF-ga~~anVQPhSGs~AN~av~~A--ll~pGDt 114 (413)
T COG0112 38 TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLF-GAEYANVQPHSGSQANQAVYLA--LLQPGDT 114 (413)
T ss_pred CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHh-CCCccccCCCCchHHHHHHHHH--HcCCCCe
Confidence 578999998887765 1 11 222 2333444444555566 4443322 45899999999983 3345677
Q ss_pred EEEEeCCCCCCchhH--HHhcCCCCccCCCCCCCCCCCCCCCceEEccCC------CHHHHHHHHhcCCCCeEEEEEccc
Q 011959 184 IIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------DVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 184 ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
|+..+-+.-|+.... ...+|.. .+.+.++++ |.|+++++.+++ +++.||+=.
T Consensus 115 imgm~l~~GGHltHg~~v~~sG~~-----------------~~~v~Y~vd~et~~IDyD~~~k~a~e~--kPK~ii~G~- 174 (413)
T COG0112 115 IMGLDLSHGGHLTHGSPVNFSGKL-----------------FNVVSYGVDPETGLIDYDEVEKLAKEV--KPKLIIAGG- 174 (413)
T ss_pred EecccCCCCCcccCCCCCCcccee-----------------EEeEecccccccCccCHHHHHHHHHHh--CCCEEEECc-
Confidence 777654432321111 0111110 123333333 789999998876 456666632
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecH-H
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRR-D 330 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~-~ 330 (474)
+.--...+ +++++++|++.|++|++|=+| .|+ -.|. +. .-+.. .|++ |.-|+|-| -|-|.+++++ +
T Consensus 175 -SaY~r~id----~~~~reIad~VGA~L~~DmAHiaGLVA~G~-~p-~P~~~-AdvVTtTTHKTlrG-PrGG~Il~~~ee 245 (413)
T COG0112 175 -SAYSRPID----FKRFREIADEVGAYLMVDMAHVAGLIAGGV-HP-NPLPH-ADVVTTTTHKTLRG-PRGGIILTNDEE 245 (413)
T ss_pred -cccccccC----HHHHHHHHHHhCceEEehHHHHHHHHhccc-CC-CCCCc-cceEeCCcccCCCC-CCceEEEeccHH
Confidence 11122344 999999999999999999999 677 3332 11 11111 4676 46699974 4667777774 7
Q ss_pred HHHhhcCCCCcccccCCCCChHH-HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEE
Q 011959 331 IMEMVAPAGPMYQAGTLSGNPLA-MTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (474)
Q Consensus 331 i~~~~~~~~~~~~~~t~~~~~~~-~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (474)
+.+.+.. ..+-+ +.+++-+- +++-..++....++ ++.+++.++.+.|.+.|.+.+.+ ++. -.-...++.+
T Consensus 246 l~kkin~--aVFPg-~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~--vvs-GgTdnHl~lV 319 (413)
T COG0112 246 LAKKINS--AVFPG-LQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFK--VVS-GGTDNHLVLV 319 (413)
T ss_pred HHHHhhh--hcCCc-cCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCe--Eec-CCccceEEEE
Confidence 8888763 22222 22332222 22222344444443 45666777788888877764321 111 0011234455
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC----------cceEE------ecCCcHHHHHHHHHHHHHH
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----------EAGFT------SLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------~~~~~------~~~~t~e~i~~~l~~l~~~ 470 (474)
++.... .........|-+.||.+....- ..+|+ .....++|++++.+.+.++
T Consensus 320 Dl~~~~------------~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~v 387 (413)
T COG0112 320 DLRSKG------------LTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADV 387 (413)
T ss_pred EcccCC------------CCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHH
Confidence 543111 1123444555566988864421 12455 2566788999999988888
Q ss_pred Hhh
Q 011959 471 LRQ 473 (474)
Q Consensus 471 ~~~ 473 (474)
+..
T Consensus 388 l~~ 390 (413)
T COG0112 388 LDG 390 (413)
T ss_pred Hhc
Confidence 753
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-07 Score=102.62 Aligned_cols=310 Identities=11% Similarity=0.130 Sum_probs=168.9
Q ss_pred EEeccCChhhccCCC-CCHHHHHHHHHHHHhcCCCC-CCCH-------HHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHH
Q 011959 101 YIDYVGSWGPAIIGH-ADDQVLAALGETMKKGTSFG-APCL-------LENVLAEMVISAVP-SIEMVRFVNSGTEACMG 170 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~-~~~~-------~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~ 170 (474)
|.+|.+. .+.+| .++.|.+++.+..+-.+.|+ |..+ ...++...++++++ +.+.+-++.++|.+.++
T Consensus 104 ~~~fiG~---G~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea 180 (993)
T PLN02414 104 FKSYIGM---GYYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEA 180 (993)
T ss_pred cccccCC---CCCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHH
Confidence 4454433 45555 56667688887665444343 2222 23466667777775 56789999999999997
Q ss_pred HHHHhHhhc--CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 171 VLRLARAFT--GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 171 al~~ar~~~--~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
++... .++ ++++|++.+..| +.+...+..... ..|+ ++..++..+.+ ...+.+.
T Consensus 181 ~~~a~-~~~~g~~~~VlVs~~~h-P~~~~v~~t~a~---------~~Gi------eV~~v~~~~~~-------~~~~~v~ 236 (993)
T PLN02414 181 MAMCN-NILKGKKKKFLIASNCH-PQTIDVCQTRAD---------GLGL------EVVVADEKDFD-------YSSGDVC 236 (993)
T ss_pred HHHHH-hcccCCCCEEEEcCccC-HhHHHHHHHhhh---------hcCC------EEEEecchhhc-------cccCceE
Confidence 77533 333 345666665555 434333322110 1111 34444432211 1122455
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE--eccccCcccCCCccccccCCCCceee--hhhhc---C-CCc
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF--DEVMTGFRLAYGGAQEYFGVTPDLTT--LGKII---G-GGL 320 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~--DEv~~g~r~g~~~~~~~~g~~pdi~t--~sK~l---~-~G~ 320 (474)
+++ ..+.+..|.+.+ +++|.++|+++|+++++ |-+..+. .-....+| .|+++ .-|.. | ||-
T Consensus 237 ~vl-vq~P~~~G~v~d----v~~I~~~ah~~GaL~iVaad~lal~~----l~~pge~G--ADi~vgsgqKwg~P~G~GGP 305 (993)
T PLN02414 237 GVL-VQYPATDGEVLD----YAEFVKNAHANGVKVVMATDLLALTM----LKPPGEWG--ADIVVGSAQRFGVPMGYGGP 305 (993)
T ss_pred EEE-EecCCCCeEEcC----HHHHHHHHHHcCCEEEEEECHHHhcC----CCCHhhcc--CcEEEECCCccccCCCCCCC
Confidence 555 444466899988 99999999999999999 4332111 00122233 46653 23433 2 455
Q ss_pred ceEEEEecHHHHHhhcCC----------CCcc---------c--ccCCCCChHHHHHHHHHHH-----HhcC---CCHHH
Q 011959 321 PVGAYGGRRDIMEMVAPA----------GPMY---------Q--AGTLSGNPLAMTAGIHTLK-----RLKE---PGTYE 371 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~----------~~~~---------~--~~t~~~~~~~~aaa~aal~-----~~~~---~~~~~ 371 (474)
..|++.+++++.+.+-.. ++.+ | .-..+.|..+..+..+++. ++.. ++..+
T Consensus 306 ~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ 385 (993)
T PLN02414 306 HAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQ 385 (993)
T ss_pred CeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 599999999886644210 0110 0 0011123322222222222 2222 34456
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE
Q 011959 372 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT 451 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~ 451 (474)
++.++..+++++|.+.. +.+.. ......+.+.+ ++ ..++.+.|.++||.++....+.+++
T Consensus 386 ri~~la~~l~~~L~~~G--~~~~~--~~~f~~vt~~~-------------~~---~~~v~~~L~~~gI~l~~~~~~~lrv 445 (993)
T PLN02414 386 RVHGLAGVFAAGLKKLG--FQVQS--LPFFDTVKVKC-------------SD---ADAIADAAAKVGINLRVVDANTVTV 445 (993)
T ss_pred HHHHHHHHHHHHHhhcC--CccCC--CCCcCeEEEec-------------CC---HHHHHHHHHHCCCeeEEecCCeEEE
Confidence 77778888888886542 11111 11111112221 11 1578899999999887665445555
Q ss_pred --ecCCcHHHHHHHHHHHH
Q 011959 452 --SLAHSSDDIQHTITAAE 468 (474)
Q Consensus 452 --~~~~t~e~i~~~l~~l~ 468 (474)
....|++|||.++++|.
T Consensus 446 s~~e~~T~edId~L~~~l~ 464 (993)
T PLN02414 446 SFDETTTLEDVDKLFKVFA 464 (993)
T ss_pred EeeccCCHHHHHHHHHHHc
Confidence 46789999999999996
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.6e-08 Score=95.71 Aligned_cols=264 Identities=17% Similarity=0.139 Sum_probs=136.0
Q ss_pred eCCHHHHHHHHHHHhHhhc-CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC------CH
Q 011959 161 VNSGTEACMGVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------DV 233 (474)
Q Consensus 161 ~~sGseA~~~al~~ar~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~------d~ 233 (474)
..||+.||..++. ++. ++++|+.++...=|+...........+. . .....+.+.++.+ |.
T Consensus 92 p~SGs~An~av~~---aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~--------~--~~~~~~~~~y~~d~~~~~ID~ 158 (399)
T PF00464_consen 92 PHSGSQANLAVYM---ALLKPGDTIMGLSLPHGGHLSHGSSVNFKKIS--------A--SGLYFESVPYPVDPDTGLIDY 158 (399)
T ss_dssp -SSHHHHHHHHHH---HHT-TT-EEEEEEGGGT--GGGT-TTSHSBSS--------H--HHHHSEEEEEEB-TTTSSB-H
T ss_pred cCCchHHHHHHHH---HHHhhcCcEEecChhhcccccccccccccccc--------c--ccceEEEEeeeeecCCCeECH
Confidence 4589999999988 444 5678888865432221100000000000 0 0000012222222 89
Q ss_pred HHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCceee
Q 011959 234 SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT 311 (474)
Q Consensus 234 ~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~t 311 (474)
+.++++++++ ++++||+-...-+ ...+ +++++++|++.|++|++|-.| .|+ -.| .+. +-+.. .|++|
T Consensus 159 d~l~~~a~~~--kPklIi~G~S~y~--~~~d----~~~~reIad~vga~l~~D~sH~~GLIa~g-~~~-~P~~~-ADvvt 227 (399)
T PF00464_consen 159 DELEKLAKEH--KPKLIICGASSYP--RPID----FKRFREIADEVGAYLMADISHIAGLIAGG-LFP-NPFPY-ADVVT 227 (399)
T ss_dssp HHHHHHHHHH----SEEEEE-SSTS--S-------HHHHHHHHHHTT-EEEEE-TTTHHHHHTT-SS---GCCT-SSEEE
T ss_pred HHHHHHHhhc--CCCEEEECchhcc--CccC----HHHHHHHHHhcCcEEEecccccccceehh-eec-Ccccc-ceEEE
Confidence 9999999876 6778888664321 1233 899999999999999999999 676 333 222 22332 58875
Q ss_pred --hhhhcCCCcceEEEEec--------------HHHHHhhcCCCCcccccCCCCChHHHHHH-HHHHHHhcC---CCHHH
Q 011959 312 --LGKIIGGGLPVGAYGGR--------------RDIMEMVAPAGPMYQAGTLSGNPLAMTAG-IHTLKRLKE---PGTYE 371 (474)
Q Consensus 312 --~sK~l~~G~~iG~~~~~--------------~~i~~~~~~~~~~~~~~t~~~~~~~~aaa-~aal~~~~~---~~~~~ 371 (474)
.-|+|.| -+-|.++.+ +++.+.+.+ ..+-+ ..+++-....|+ ..++....+ .++.+
T Consensus 228 ~sThKtl~G-PrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~--avfP~-~qg~~h~~~iaalAval~ea~~~~fk~Ya~ 303 (399)
T PF00464_consen 228 GSTHKTLRG-PRGGIILTNKGSKNVDKKGKEIDEELAEKIDS--AVFPG-LQGGPHMHRIAALAVALKEALSPEFKEYAK 303 (399)
T ss_dssp EESSGGG-S-SS-EEEEES-SEEEE-TTS-EEEHHHHHHHHH--HHTTT-T-SS--HHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred eeccccccc-cCceEEEEcCCccccCCcccccHHHHHHHhcc--ccCCC-cccCcchhHHHHHHHHHhcccCHHHHHHHH
Confidence 5699974 466777788 778887763 12221 222222322333 344555433 46777
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------
Q 011959 372 YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------ 445 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------ 445 (474)
++.++.+.|.+.|.+.+.+. .. -.-...++++++... ........+.|.+.||.+....
T Consensus 304 qVv~NAk~La~~L~~~G~~v--~~-ggTd~H~vlvd~~~~------------~~~g~~a~~~Le~~gI~vnkn~iP~d~~ 368 (399)
T PF00464_consen 304 QVVKNAKALAEALQERGFKV--VT-GGTDNHQVLVDLRSF------------GIDGKEAEKALEEAGIIVNKNTIPGDRS 368 (399)
T ss_dssp HHHHHHHHHHHHHHHTT-EE--GG-GS-SSSEEEEEGGGG------------TS-HHHHHHHHHHTTEE-EEE--TTTST
T ss_pred HHHHHHHHHHHHHhhCCcEE--EE-CCCCCCeEEEEeccc------------ccchHHHHHHHHhcCeeecccccCCCCC
Confidence 78888888888888763321 11 011233455554321 1122456677778899985431
Q ss_pred ---CcceEEe------cCCcHHHHHHHHHHH
Q 011959 446 ---FEAGFTS------LAHSSDDIQHTITAA 467 (474)
Q Consensus 446 ---~~~~~~~------~~~t~e~i~~~l~~l 467 (474)
...+|+. ....++|++++.+.|
T Consensus 369 ~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I 399 (399)
T PF00464_consen 369 PFVPSGLRLGTPALTRRGMKEEDMKEIAELI 399 (399)
T ss_dssp TTT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred CCCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence 1246762 466788887776543
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.5e-08 Score=104.58 Aligned_cols=309 Identities=9% Similarity=-0.002 Sum_probs=172.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCeE-EEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccC-CCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMV-RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL-GLPDS 214 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v-~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~-~~~~~ 214 (474)
++....+..+..++.+ +.++. +++||.|.+|.+++. +..++++.|+++...|-+...++.++|..+..+ +.-..
T Consensus 193 ~~G~i~eAe~~AA~~f-gAd~tyfvvNGTS~~n~av~~---a~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~ 268 (714)
T PRK15400 193 HSGPHKEAEEYIARVF-NADRSYMVTNGTSTANKIVGM---YSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNA 268 (714)
T ss_pred CChHHHHHHHHHHHHh-CCCcEEEEeCchHHHHHHHHH---HhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccc
Confidence 3344444445555556 55555 456666778888777 556777788889999999888898888743321 11111
Q ss_pred CCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe---EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 011959 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291 (474)
Q Consensus 215 ~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~---a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (474)
.|++.... ... -+.+.+++.++++++.. ++||+.|.+ .|.+.. ++.|.++|+.++ |++||+|.+
T Consensus 269 ~Gi~g~I~--~~~---~~~e~i~~~i~~~p~ak~p~~~vit~pTY--dG~~yd----~~~I~~~~~~~~--ilvDEAwga 335 (714)
T PRK15400 269 YGILGGIP--QSE---FQHATIAKRVKETPNATWPVHAVITNSTY--DGLLYN----TDFIKKTLDVKS--IHFDSAWVP 335 (714)
T ss_pred cCCccCCC--ccc---cCHHHHHHHHHhCccccCccEEEEECCCC--ccEecC----HHHHHHHhCCCC--EEEEccchh
Confidence 12211000 000 14799999998876433 477777754 577887 889999999887 689999976
Q ss_pred c-ccCCCc----cccccCCCC-c--ee--ehhhhcCCCcc-eEEEEe----c-HHHHHhhcCCCCcccccCCCCChHHHH
Q 011959 292 F-RLAYGG----AQEYFGVTP-D--LT--TLGKIIGGGLP-VGAYGG----R-RDIMEMVAPAGPMYQAGTLSGNPLAMT 355 (474)
Q Consensus 292 ~-r~g~~~----~~~~~g~~p-d--i~--t~sK~l~~G~~-iG~~~~----~-~~i~~~~~~~~~~~~~~t~~~~~~~~a 355 (474)
. .....+ +.. .|-.+ | ++ +.-|.+++ +. .+++.. + +++-+.+. ...|.|.+-+-++
T Consensus 336 h~~F~p~~~~~sam~-~ga~~~~~i~vtQStHKtL~a-lTQaS~LHvkg~vd~~~~n~a~~------m~~STSPsY~l~A 407 (714)
T PRK15400 336 YTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAYM------MHTTTSPHYGIVA 407 (714)
T ss_pred hhccCcccCCcChhh-cCCCCCCceEEEEchhhcccc-hhHHhHHHHcCCCCHHHHHHHHH------HHcCCCcHHHHHH
Confidence 5 433222 221 22221 3 44 45687763 21 222211 1 22223222 3334466666666
Q ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhc-CCeeEEeeece--------------eEEEE-E-----ecC
Q 011959 356 AGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISG--------------MFGFF-F-----TEG 411 (474)
Q Consensus 356 aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~v~~~g~--------------~~~i~-~-----~~~ 411 (474)
..-.+...++. ..+.++..+....+|+.|.++.... +....+-+.-. ..++. + .-+
T Consensus 408 SLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lD 487 (714)
T PRK15400 408 STETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLD 487 (714)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccC
Confidence 66666666652 5677888888888888887753210 00000000000 00000 0 000
Q ss_pred CCcCcccc-c-------ccchHHHHHHHHHHHHCCeEecccCCcceE--EecCCcHHHHHHHHHHHHHH
Q 011959 412 PVYNFEDA-K-------KSETTKFARFYRGMLEEGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 412 ~~~~~~~~-~-------~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~--~~~~~t~e~i~~~l~~l~~~ 470 (474)
+.+-.... . ....-....+.+.|.++||.+.-.+...+. ++...|+++++.+++.|.++
T Consensus 488 P~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f 556 (714)
T PRK15400 488 PIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDF 556 (714)
T ss_pred CceEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 00000000 0 000112346778888999998877655443 37888999999999998875
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.1e-08 Score=96.71 Aligned_cols=175 Identities=23% Similarity=0.233 Sum_probs=111.9
Q ss_pred CHHHHHHHHHHHhhCCCC--------CeEEEeCCHHHHHHHHHHHhHhhc-------C----CcEEEEEeCCCCCCchhH
Q 011959 138 CLLENVLAEMVISAVPSI--------EMVRFVNSGTEACMGVLRLARAFT-------G----RERIIKFEGCYHGHADPF 198 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~--------~~v~~~~sGseA~~~al~~ar~~~-------~----~~~ii~~~~~yhg~~~~~ 198 (474)
.+.+.++.+++++.++-. -.-+||+|||+||..|+..||... + .+-+|+....-|-+..-+
T Consensus 78 ~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Ka 157 (373)
T PF00282_consen 78 TEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKA 157 (373)
T ss_dssp HHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHH
T ss_pred ccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHh
Confidence 567889999999988522 257899999999999999887542 1 234666666668777777
Q ss_pred HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC--CCC-eEEEEEccccCCCCcccCCHHHHHHHHHH
Q 011959 199 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRI 275 (474)
Q Consensus 199 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~-~a~vi~ep~~~~~G~i~~~~~~l~~l~~l 275 (474)
+...|.++..++......+ |+++|++.|++. .+. +.+|+..-...++|.+-| +++|.++
T Consensus 158 a~~lGlg~~~I~~~~~~~m--------------d~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~----l~~i~~i 219 (373)
T PF00282_consen 158 ARILGLGVRKIPTDEDGRM--------------DIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP----LEEIADI 219 (373)
T ss_dssp HHHTTSEEEEE-BBTTSSB---------------HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S----HHHHHHH
T ss_pred cceeeeEEEEecCCcchhh--------------hHHHhhhhhcccccccccceeeeccCCCcccccccC----HHHHhhh
Confidence 7777765433222111111 789998887642 122 334555555556888888 9999999
Q ss_pred HHHhCCEEEEeccccCc-ccCCCccccccCC-CCceee--hhhhcCCCcceEEEEecHH
Q 011959 276 TKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD 330 (474)
Q Consensus 276 ~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~t--~sK~l~~G~~iG~~~~~~~ 330 (474)
|++|+++|.+|-++.|. ........-..|+ ..|-++ .-|.++..++.|+++.+.+
T Consensus 220 ~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~ 278 (373)
T PF00282_consen 220 CEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDK 278 (373)
T ss_dssp HHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSG
T ss_pred ccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecc
Confidence 99999999999999883 2111111112233 235554 6799988889999987764
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-07 Score=89.65 Aligned_cols=295 Identities=18% Similarity=0.206 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhc-----CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCC
Q 011959 139 LLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212 (474)
Q Consensus 139 ~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~-----~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~ 212 (474)
++..+|.++|++.. +.+.|-+ -|+|+++=.+-|.+.|+|- +.+++++...+-||......++.|..+..+...
T Consensus 109 ~li~~Lq~~L~~IT-G~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~ 187 (496)
T COG1003 109 ELIYELQEWLKEIT-GMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCD 187 (496)
T ss_pred HHHHHHHHHHHHhc-CCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEecC
Confidence 44568888998888 6666654 5789998888888777772 245666667789998777777777655443222
Q ss_pred CCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc---
Q 011959 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM--- 289 (474)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~--- 289 (474)
....+ |+++|++.+. ++++++++..++ .-|.. +++ +.+|+++.+++|..|..|-+-
T Consensus 188 ~~G~V--------------DlddLk~k~~---~~~AalMiTnPs-T~GvF--E~~-I~ei~~ivH~~Gg~vY~DGANlNA 246 (496)
T COG1003 188 ENGNV--------------DLDDLRAKAE---DNLAALMITNPS-TLGVF--EED-IREICEIVHEAGGQVYYDGANLNA 246 (496)
T ss_pred CCCCc--------------cHHHHHHHhc---cceeEEEeccCc-ccccc--hhh-HHHHHHHHHHcCCEEEecCcchhh
Confidence 11122 8999999887 467777775443 33432 334 999999999999999999765
Q ss_pred -cCc-ccCCCccccccCCCCcee--ehhhhc----CC-CcceEEEEecHHHHHhhcCC------CC----------cccc
Q 011959 290 -TGF-RLAYGGAQEYFGVTPDLT--TLGKII----GG-GLPVGAYGGRRDIMEMVAPA------GP----------MYQA 344 (474)
Q Consensus 290 -~g~-r~g~~~~~~~~g~~pdi~--t~sK~l----~~-G~~iG~~~~~~~i~~~~~~~------~~----------~~~~ 344 (474)
.|. |.|.++ .|++ -+-|+| || |-..|-+..++++...+-.. .. ....
T Consensus 247 ~vG~~rPGd~G--------~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~ 318 (496)
T COG1003 247 IVGLARPGDMG--------FDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVS 318 (496)
T ss_pred hhccccccccc--------cceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceee
Confidence 455 665432 2333 234555 43 45577777777776655320 00 0112
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccc
Q 011959 345 GTLSGNPLAMTAGIHTLKRLKEPGTY---EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 421 (474)
Q Consensus 345 ~t~~~~~~~~aaa~aal~~~~~~~~~---~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~ 421 (474)
..+-+|.....-+.+.+..+-.+++. +...-+..|+.++|+.. ++++.. +.. ...-++.-+ ..+.+.
T Consensus 319 ~a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~---y~~~y~--~~~-~~~HE~ild----~r~l~~ 388 (496)
T COG1003 319 AAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGY---YPVPYT--GEN-RVAHECILD----ARPLKK 388 (496)
T ss_pred ccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc---CccccC--CCC-cceeEEEee----chHhHh
Confidence 23445555555556666655444332 33344577888888763 332211 111 112222111 000111
Q ss_pred cchHHHHHHHHHHHHCCeEecccCCc-----ceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 422 SETTKFARFYRGMLEEGVYFAPSQFE-----AGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 422 ~~~~~~~~~~~~l~~~Gv~v~~~~~~-----~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
........++++|++.|+..-...++ .+.+ .=.-+.+++|++++++.++.++
T Consensus 389 ~~Gv~~~DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~E 447 (496)
T COG1003 389 ETGVRALDVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREE 447 (496)
T ss_pred hcCCcHHHHHHHHHhcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 12234578999999999975544433 1222 2344789999999999887654
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-07 Score=91.33 Aligned_cols=227 Identities=18% Similarity=0.248 Sum_probs=143.7
Q ss_pred ccCCCC--CHHHHHHHHHHHHhcCC--C----CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCc
Q 011959 111 AIIGHA--DDQVLAALGETMKKGTS--F----GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 182 (474)
Q Consensus 111 ~~lG~~--~p~v~~a~~~~~~~~~~--~----~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~ 182 (474)
.++|-+ +|++++++.+.+..... + +....-...+++.++... +.+.+.++|.-+.|+..++- ++..+.
T Consensus 32 t~lG~s~~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~-~aea~~ivnnn~aAVll~~~---al~~~~ 107 (395)
T COG1921 32 TNLGRSLYSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLT-GAEAAAIVNNNAAAVLLTLN---ALAEGK 107 (395)
T ss_pred ccCCCccCCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhccc-chhheeeECCcHHHHHHHHh---hhccCC
Confidence 455553 79999999988876321 1 111111225555555444 57888899988888888876 555444
Q ss_pred EEEEEeC----CCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCC
Q 011959 183 RIIKFEG----CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (474)
Q Consensus 183 ~ii~~~~----~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (474)
++|+.-+ ++|......+..+|......+.. + .-...+++.+|.++. ....-+..++++.
T Consensus 108 EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~t---n-------------~t~~~d~~~AIne~t-a~llkV~s~~~~f 170 (395)
T COG1921 108 EVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGTT---N-------------RTHLKDYELAINENT-ALLLKVHSSNYGF 170 (395)
T ss_pred eEEEEccccccCCCCChhHHHHHcCCEEEEeccc---C-------------cCCHHHHHHHhccCC-eeEEEEeeccccc
Confidence 4444322 47777777777777654432211 1 115788888998642 1222334444444
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehh--hhcCCCcceEEEEecHHHHHhh
Q 011959 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMV 335 (474)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~s--K~l~~G~~iG~~~~~~~i~~~~ 335 (474)
.+.+ + ++++.++|++||+++|+|..-... + -.....+.+...+|++++| |.|+ |.+-|.++|++++++.+
T Consensus 171 ~~~l-~----~~~l~~ia~~~~lpvivD~aSg~~v~-~e~~l~~~la~GaDLV~~SgdKllg-GPqaGii~GkKelI~~l 243 (395)
T COG1921 171 TGML-S----EEELVEIAHEKGLPVIVDLASGALVD-KEPDLREALALGADLVSFSGDKLLG-GPQAGIIVGKKELIEKL 243 (395)
T ss_pred cccc-c----HHHHHHHHHHcCCCEEEecCCccccc-cccchhHHHhcCCCEEEEecchhcC-CCccceEechHHHHHHH
Confidence 4543 3 788999999999999999876322 2 1122233445568999877 7776 55688889999999988
Q ss_pred cCCCCcccccCCCCChHHHHHHHHHHHHhcCCC
Q 011959 336 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (474)
Q Consensus 336 ~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (474)
+.. ...-.+-......++..++|+.....+
T Consensus 244 q~~---~l~Ralrv~K~tla~l~~aLe~y~~~~ 273 (395)
T COG1921 244 QSH---PLKRALRVDKETLAALEAALELYLQPE 273 (395)
T ss_pred Hhh---hhhhhhhcCcHhHHHHHHHHHHHcCch
Confidence 742 122234567788888889998876643
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.8e-07 Score=86.37 Aligned_cols=287 Identities=14% Similarity=0.131 Sum_probs=153.1
Q ss_pred HHHHHHHhhCC-CCCeEEEeCCHH-HHHHHHHHHhHhh-----------cCCcEEEEEeCCCCCCchhHHHhcCCCCccC
Q 011959 143 VLAEMVISAVP-SIEMVRFVNSGT-EACMGVLRLARAF-----------TGRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (474)
Q Consensus 143 ~la~~l~~~~~-~~~~v~~~~sGs-eA~~~al~~ar~~-----------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (474)
++.+..++.++ ..++++...+.| +-+.-++..+..+ .++-++++..|+|..+. .....-|-
T Consensus 73 e~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHF-ai~E~~Gi----- 146 (425)
T PF12897_consen 73 EARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHF-AITEHFGI----- 146 (425)
T ss_dssp HHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHH-HHHHHCT------
T ss_pred HHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHH-HHHHhhCc-----
Confidence 34444444443 456666654444 4444444433222 12467888899986532 22222232
Q ss_pred CCCCCCCCCCCCCCceEEccCC----CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHH-HHHhCCEEE
Q 011959 210 GLPDSPGVPKGATYETLTAPFN----DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI-TKENGALLI 284 (474)
Q Consensus 210 ~~~~~~g~~~~~~~~~~~~~~~----d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l-~~~~g~llI 284 (474)
+.+.+|.+ |++.+|+++.+. +.++.|.|-|.++|...+..++|-.++|+++ +...+..|+
T Consensus 147 --------------emi~VpM~~dGPDmD~Ve~LV~~D-~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~ 211 (425)
T PF12897_consen 147 --------------EMIPVPMTEDGPDMDMVEELVAED-PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIF 211 (425)
T ss_dssp --------------EEEEEEEETTEE-HHHHHHHTHTS-TTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEE
T ss_pred --------------EEEecCCCCCCCCHHHHHHHHhcC-CccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEE
Confidence 23444432 899999998764 4799999999887743445566668888887 346799999
Q ss_pred EeccccCc--ccCC-C-cc-cc------ccCCCCcee----ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCC
Q 011959 285 FDEVMTGF--RLAY-G-GA-QE------YFGVTPDLT----TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349 (474)
Q Consensus 285 ~DEv~~g~--r~g~-~-~~-~~------~~g~~pdi~----t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~ 349 (474)
-|.+|+ + -++. . -. .. ..| .||.+ +.||.--+|-.++++.++++-++.+. ......|.+.
T Consensus 212 WDNAY~-vHhL~~~~~~~~~~nil~~~~~AG-npdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~---~~~~~~tIgp 286 (425)
T PF12897_consen 212 WDNAYA-VHHLYDEEPRDALLNILDACAKAG-NPDRVYVFASTSKITFPGAGVAFFAASEANLAWIK---KHLSVQTIGP 286 (425)
T ss_dssp EE-TTT-T-BSSSSSS------HHHHHHHTT--TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHH---HHHHHH-S--
T ss_pred eecCce-EeeccccccchhhhHHHHHHHHcC-CCCeEEEEecccccccCCcceeeeecCHHHHHHHH---HHhcCceeCc
Confidence 999995 2 1111 0 00 01 111 45533 68996556667999999998888776 3334456677
Q ss_pred ChHHHHHHHHHHHHhcC-C-CHHHHHHHHHHHHHHHHH-------HHhh-hcCCee-EEeeeceeEEEEEecCCCcCccc
Q 011959 350 NPLAMTAGIHTLKRLKE-P-GTYEYLNKITGELTQGII-------DAGK-KAGHAI-CGGYISGMFGFFFTEGPVYNFED 418 (474)
Q Consensus 350 ~~~~~aaa~aal~~~~~-~-~~~~~~~~~~~~l~~~L~-------~~~~-~~~~~~-~v~~~g~~~~i~~~~~~~~~~~~ 418 (474)
+-+.|..=..- +.+ + ++.++.++..+.++-+++ +.+. ..++.. ..+..|.|+.++..+.
T Consensus 287 dKvNQLRHvrf---f~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G------- 356 (425)
T PF12897_consen 287 DKVNQLRHVRF---FKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG------- 356 (425)
T ss_dssp -HHHHHHHHHH---HHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT-------
T ss_pred cHHHHHHHHHH---hcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC-------
Confidence 77776554433 334 4 777788777777665443 3333 344443 4455566777666432
Q ss_pred ccccchHHHHHHHHHHHHCCeEecccCC----------cceEE-ecCCcHHHHHHHHHHHHHHHh
Q 011959 419 AKKSETTKFARFYRGMLEEGVYFAPSQF----------EAGFT-SLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------~~~~~-~~~~t~e~i~~~l~~l~~~~~ 472 (474)
.+.++.+.+.+.||.+.+.|. ..+|+ +..-+.||++.+++.+.-+++
T Consensus 357 -------~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 357 -------TAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVK 414 (425)
T ss_dssp --------HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 246889999999999988642 13577 455688999999998876553
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-06 Score=84.14 Aligned_cols=310 Identities=13% Similarity=0.017 Sum_probs=171.5
Q ss_pred CHHHHHHHHHHHHh--cCC-------CCC--CCHHHHHHHHHHHhhCC--CCCeEEEe-CCHHHHHHHHHHHhHhhcCCc
Q 011959 117 DDQVLAALGETMKK--GTS-------FGA--PCLLENVLAEMVISAVP--SIEMVRFV-NSGTEACMGVLRLARAFTGRE 182 (474)
Q Consensus 117 ~p~v~~a~~~~~~~--~~~-------~~~--~~~~~~~la~~l~~~~~--~~~~v~~~-~sGseA~~~al~~ar~~~~~~ 182 (474)
+++|++++++.+.+ +++ +.. ..+...+..+.|.+.+. ...+|+|. .|||.++++++.. .+.+++
T Consensus 16 p~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~N--ll~~g~ 93 (364)
T PRK12462 16 PDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMN--FSRPGA 93 (364)
T ss_pred CHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHH--cCCCCC
Confidence 78899988877755 211 111 13445566666777664 22356555 5599999999884 223445
Q ss_pred EEE-EEeCCCCCCchhHHHhc-CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCC
Q 011959 183 RII-KFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (474)
Q Consensus 183 ~ii-~~~~~yhg~~~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (474)
+++ +...++.|....-.+.. | .+...... ... +.-.+ .+++.+ +.. ++.+.|.+..+...+|
T Consensus 94 ~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~--~~~------~~~~~--p~~~~~----~~~-~d~~~v~~t~NETstG 157 (364)
T PRK12462 94 AAPEYVTTGYWSRKAIGEASRVA-AMRVVWDG--AAS------GYRTL--PSLAEL----DWD-ARAPFRHYVSNETVEG 157 (364)
T ss_pred cEEEEEeCCHHHHHHHHHHHhcC-CceEecCc--CCC------CCCcC--CCHHHh----ccC-CCCcEEEEccCCCCce
Confidence 455 56666666443332221 2 12111000 000 00000 033433 222 2567777877777788
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcC-CCcceEEEEecHHHHHhhcC
Q 011959 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPVGAYGGRRDIMEMVAP 337 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~-~G~~iG~~~~~~~i~~~~~~ 337 (474)
+..+ ++.+.+++++|+|-+-+ | .+.....+.+ |++ ...|.|| +| ++.++.+++.++....
T Consensus 158 v~~~---------~~~~~~~~llvvD~sS~-~-~s~pid~~~~----dvi~agsQKnlgP~G--ltvvivs~~al~~~~~ 220 (364)
T PRK12462 158 LQFP---------DAAGLPDSPLIADMSSD-F-MSRPFDVEAY----GMVYAHAQKNLGPAG--VTVAIIRRALLERVPD 220 (364)
T ss_pred EecC---------cccccCCCeEEEEcCch-h-hCCCCChHHc----cEEEeeccccCCCCc--eEEEEECHHHHhhccc
Confidence 8775 23334799999997664 2 1222333333 665 4679998 34 7788899999877653
Q ss_pred CCCcc--------cccCCC-CChHHHHHHHHHHHHhcCC--C---HHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeecee
Q 011959 338 AGPMY--------QAGTLS-GNPLAMTAGIHTLKRLKEP--G---TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403 (474)
Q Consensus 338 ~~~~~--------~~~t~~-~~~~~~aaa~aal~~~~~~--~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~ 403 (474)
.-+.+ ..+++. .+.....+...+|+.+.++ + ..++.+++.+.+++.+.+...-+....+...+..|
T Consensus 221 ~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~m 300 (364)
T PRK12462 221 TLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTM 300 (364)
T ss_pred cCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcc
Confidence 21111 223543 3455666677888888655 3 34444455555555555432111111111122222
Q ss_pred EEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
-+.| ..++.+...+|.+.+.++|+.-..+. .+.+|.+ -.++.|+++.+++-++++-++
T Consensus 301 -nv~f-----------~~~~~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 301 -NVAF-----------RFRQPRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred -eEEE-----------EcCCHHHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 1222 12344556789999999999865442 2346665 477999999999999887653
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.3e-06 Score=88.10 Aligned_cols=231 Identities=14% Similarity=0.095 Sum_probs=135.9
Q ss_pred CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcC--------C-c------------------------
Q 011959 137 PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG--------R-E------------------------ 182 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~--------~-~------------------------ 182 (474)
.+..+.++.+++++.++ +...-.||+|||+||..+|..||.... + .
T Consensus 121 ~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~ 200 (608)
T TIGR03811 121 TSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLES 200 (608)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccc
Confidence 46788999999999986 333567999999999999999986420 0 0
Q ss_pred ---------------------E-EEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-----CHHH
Q 011959 183 ---------------------R-IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSA 235 (474)
Q Consensus 183 ---------------------~-ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~ 235 (474)
- +++....-|-+..-++...|.+. .+++.+|.+ |+++
T Consensus 201 ~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~----------------~~vv~VpvD~~~rmd~~~ 264 (608)
T TIGR03811 201 AGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGL----------------DQVIPVPVDSNYRMDINE 264 (608)
T ss_pred cccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCc----------------ccEEEeecCCCCcCCHHH
Confidence 0 22223333444444444444321 123333322 7999
Q ss_pred HHHHHhc---CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHH---HHhCC--EEEEeccccCc-cc---C-C----C-
Q 011959 236 LENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT---KENGA--LLIFDEVMTGF-RL---A-Y----G- 297 (474)
Q Consensus 236 le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~---~~~g~--llI~DEv~~g~-r~---g-~----~- 297 (474)
|++.|++ .+..+.+|+..-...+.|.+-| +++|.++| +++|+ +|++|-+|.|+ +. . . +
T Consensus 265 L~~~I~~~~~~g~p~~~VVataGTT~~GaiDp----l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~ 340 (608)
T TIGR03811 265 LEKIIRKLAAEKTPILGVVGVVGSTEEGAVDG----IDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPY 340 (608)
T ss_pred HHHHHHHHHhcCCCeEEEEEEcCCcCCcccCC----HHHHHHHHHHHHHcCCceeEeeeccccchhhhhhcccccccccc
Confidence 9988863 2223445555555556788999 88888888 77898 69999999885 21 0 0 0
Q ss_pred ------------c-------cc----cccCC-CCceee--hhhhcCCCcceEEEEecH-HHHHhhcCCCCcc--------
Q 011959 298 ------------G-------AQ----EYFGV-TPDLTT--LGKIIGGGLPVGAYGGRR-DIMEMVAPAGPMY-------- 342 (474)
Q Consensus 298 ------------~-------~~----~~~g~-~pdi~t--~sK~l~~G~~iG~~~~~~-~i~~~~~~~~~~~-------- 342 (474)
| .- ..-|+ ..|-+| .-|.+.-.++.|+++.+. ++.+.+.....+.
T Consensus 341 ~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p 420 (608)
T TIGR03811 341 DDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGADIP 420 (608)
T ss_pred chhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhccccccCc
Confidence 0 00 00122 245555 568877778899987764 4444443211111
Q ss_pred ---cccCCCCChHH--HHHHHHHHHHh--cC---CCHHHHHHHHHHHHHHHHHHH
Q 011959 343 ---QAGTLSGNPLA--MTAGIHTLKRL--KE---PGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 343 ---~~~t~~~~~~~--~aaa~aal~~~--~~---~~~~~~~~~~~~~l~~~L~~~ 387 (474)
...+..++..+ +++...+++.+ .. ..++++..+..+++.+.|++.
T Consensus 421 ~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 421 ALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL 475 (608)
T ss_pred ccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00122333333 44445666665 22 456667777777888877764
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-05 Score=77.58 Aligned_cols=282 Identities=15% Similarity=0.186 Sum_probs=152.6
Q ss_pred HHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcC-CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCC
Q 011959 143 VLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKG 220 (474)
Q Consensus 143 ~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~-~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~ 220 (474)
++-..++++++ +.-..-....+|.+-|+++. |+..++ +.+-++.+..-|..+...+..... ..|
T Consensus 124 efQtlv~dLTGm~VANASm~DeaTAaAEAm~m-a~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~---------~~g---- 189 (450)
T COG0403 124 EFQTLVADLTGLDVANASMLDEATAAAEAMLM-AKRVTKKKRNKFLVPKDVHPQTLDVLRTRAE---------GLG---- 189 (450)
T ss_pred HHHHHHHHHhCCCcccchhhhhHHHHHHHHHH-HHHhhcCcCceEEecCCCCHHHHHHHHhhcc---------cCc----
Confidence 44445566663 22233334445555555444 444444 334445556667766655543221 112
Q ss_pred CCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEE--EeccccCc--ccCC
Q 011959 221 ATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLI--FDEVMTGF--RLAY 296 (474)
Q Consensus 221 ~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI--~DEv~~g~--r~g~ 296 (474)
-++...+++|+++|++. .. +++.+++++-++.-|+.+.. +..|.+.++++|+++| +|=.-.++ .+|.
T Consensus 190 --~~i~~~~~~d~~~l~~~-~~--~~~~gv~vQyP~~~G~~~~d----~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe 260 (450)
T COG0403 190 --IEIEVVDADDLDDLESA-DD--GDVFGVLVQYPNTFGIVEED----LRALIEAAHSAGALVIVAADPLALGLLKPPGE 260 (450)
T ss_pred --eEEEEeccchhhhhhhc-cc--cCeEEEEEecCCCCCccchh----HHHHHHHHhhcCCEEEEEechhHhhccCCccc
Confidence 24677777788888887 42 37899999876544434444 9999999999999877 45444444 3333
Q ss_pred CccccccCCCCceee-----hhhhcC-CCcceEEEEecHHHHHhhcC----------CCCcc---------------ccc
Q 011959 297 GGAQEYFGVTPDLTT-----LGKIIG-GGLPVGAYGGRRDIMEMVAP----------AGPMY---------------QAG 345 (474)
Q Consensus 297 ~~~~~~~g~~pdi~t-----~sK~l~-~G~~iG~~~~~~~i~~~~~~----------~~~~~---------------~~~ 345 (474)
++ .||++ |+=-++ ||--.|++.++++++..+-- .++.+ -.+
T Consensus 261 ~G--------ADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATS 332 (450)
T COG0403 261 FG--------ADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATS 332 (450)
T ss_pred cC--------CceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccch
Confidence 32 25542 555566 67779999999888765421 00000 011
Q ss_pred CCCCChHHHHHHHHHHH-HhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccc
Q 011959 346 TLSGNPLAMTAGIHTLK-RLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 421 (474)
Q Consensus 346 t~~~~~~~~aaa~aal~-~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~ 421 (474)
..+.|..-++.+.+..- ++-. .++-++..++..++.++|++....+ .+.....|--+.+. .
T Consensus 333 NICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~----~~~~~~fFdt~~v~-----------~ 397 (450)
T COG0403 333 NICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGV----ELVFDHFFDTFTVR-----------V 397 (450)
T ss_pred hhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCce----EeccccceeeEEEe-----------c
Confidence 12223222222221111 1211 3445566667777777777552111 11111111111111 1
Q ss_pred cchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHHHHH
Q 011959 422 SETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 422 ~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~~ 471 (474)
+. .....+.......|+-++......+.++ =..|+++|+.+++.+....
T Consensus 398 ~~-~~~~~l~~~~~~~G~~L~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~~~ 448 (450)
T COG0403 398 PE-EVAEALLAAAIAGGINLRRVDADTVLIALTETTTKEDIDALVAAFGGVN 448 (450)
T ss_pred ch-hHHHHHHHHHHhcCCceeeecCCceEEEeecccCHHHHHHHHHHHhhhc
Confidence 11 3345666677777887776654455444 4678999999999987653
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.5e-06 Score=84.52 Aligned_cols=128 Identities=17% Similarity=0.194 Sum_probs=90.7
Q ss_pred HHHHHHHHhhCCCCC-eEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCcc-CCCCCC-CCCC
Q 011959 142 NVLAEMVISAVPSIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT-LGLPDS-PGVP 218 (474)
Q Consensus 142 ~~la~~l~~~~~~~~-~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~-~~~~~~-~g~~ 218 (474)
.+..+..++.+ +.+ ..+.+||-|.||..++. +..++++.|.++...|-+....+.++|..... .+.... .|+.
T Consensus 73 ~eAqe~aA~~f-gAd~tyFvvNGTS~ank~vi~---a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~gi~ 148 (557)
T COG1982 73 KEAQELAARVF-GADHTYFVVNGTSTANKAVIN---AVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGII 148 (557)
T ss_pred HHHHHHHHHHh-CCCceEEEECCccHHHHHHHH---hhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCCCCcccccc
Confidence 34444444445 555 55667888888888888 67777888888899999888888888764322 111111 1211
Q ss_pred CCCCCceEEccCCCHHHHHHHHhcCCCC-eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011959 219 KGATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (474)
Q Consensus 219 ~~~~~~~~~~~~~d~~~le~~l~~~~~~-~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (474)
.. =+.+.+++.+.+++.. ..+||.+|.+ .|.+.. +++|.+++.++++++..||.+
T Consensus 149 gg----------I~~~~~~~~l~~~~~~~k~~vitnpTY--dGv~~n----~~~i~~~~~~~~a~v~~deah 204 (557)
T COG1982 149 GG----------IPLETFKEALLAHPDAEKLAVITNPTY--DGVCYN----LRKIVELLHHYGAWVLYDEAH 204 (557)
T ss_pred CC----------CCHHHHHHHHHhChhhheeEEEecCcc--ceEeec----HHHHHHHHhhcCceEEhhhcC
Confidence 10 0789999888877665 6788888765 477777 899999999999999999999
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.6e-06 Score=90.90 Aligned_cols=274 Identities=14% Similarity=0.148 Sum_probs=149.1
Q ss_pred HHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcC--CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCC
Q 011959 142 NVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG--RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP 218 (474)
Q Consensus 142 ~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~--~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~ 218 (474)
.++-+.++++++ +...+-+..++|.+.++++.. +.+.+ +++|++.+..| ..+...+..... ..|+
T Consensus 124 ~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a-~~~~~~~~~~vlv~~~~h-P~~~~v~~t~a~---------~~G~- 191 (954)
T PRK05367 124 LNFQTMVADLTGLEIANASLLDEATAAAEAMALA-KRVSKSKSNRFFVDDDVH-PQTLDVLRTRAE---------PLGI- 191 (954)
T ss_pred HHHHHHHHHHHCCChhhccccccHHHHHHHHHHh-hhhccCCCCEEEEcCccC-HHHHHHHHHHHH---------hCCC-
Confidence 456667777775 455778888899999866653 33444 36777766555 433333221100 0111
Q ss_pred CCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCc
Q 011959 219 KGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 298 (474)
Q Consensus 219 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~ 298 (474)
++..++.++ ++ . .++++++ +..+.+..|.+.+ +++|.++|+++|+++++|-.+..... .-
T Consensus 192 -----ev~~~~~~~--d~----~--~~~~~~v-lvq~p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al~~--l~ 251 (954)
T PRK05367 192 -----EVVVGDAAK--AL----D--HDDVFGV-LLQYPGTSGEVRD----YTALIAAAHARGALVAVAADLLALTL--LT 251 (954)
T ss_pred -----EEEEecCcc--CC----C--cccEEEE-EEecCCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhccC--CC
Confidence 233444322 11 1 2356555 4444577899988 99999999999999999985522100 00
Q ss_pred cccccCCCCceee--hhhh---cC-CCcceEEEEecHHHHHhhcCC--C--------Ccc-------------cccCCCC
Q 011959 299 AQEYFGVTPDLTT--LGKI---IG-GGLPVGAYGGRRDIMEMVAPA--G--------PMY-------------QAGTLSG 349 (474)
Q Consensus 299 ~~~~~g~~pdi~t--~sK~---l~-~G~~iG~~~~~~~i~~~~~~~--~--------~~~-------------~~~t~~~ 349 (474)
....+| .|+++ .-|. +| ||--.|++.+++++.+.+... + +.+ ...|.+.
T Consensus 252 ~pge~G--aDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNi 329 (954)
T PRK05367 252 PPGEMG--ADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNI 329 (954)
T ss_pred ChhhcC--CCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCccccccccccccccccccccccc
Confidence 112233 36653 3453 22 344589999999887766421 0 000 0011111
Q ss_pred C-hHHHHHHHHH--HHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccc
Q 011959 350 N-PLAMTAGIHT--LKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 423 (474)
Q Consensus 350 ~-~~~~aaa~aa--l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~ 423 (474)
. ..+..+..+. +.++.. ++..+++..+..+++++|.+...+ +... .....+.+.+ +
T Consensus 330 ct~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~--~~~~--~~f~~~~~~~-------------~- 391 (954)
T PRK05367 330 CTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLE--VVHD--SFFDTLTVEV-------------G- 391 (954)
T ss_pred chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcc--cCCC--CCCCeEEEeC-------------C-
Confidence 0 1111122222 233333 345566777778888887653211 1100 0011111111 1
Q ss_pred hHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHH
Q 011959 424 TTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 468 (474)
Q Consensus 424 ~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~ 468 (474)
....++.+.|+++||.+.......++++ ...|++||+.+++.|.
T Consensus 392 -~~~~~i~~~l~~~gi~~~~~~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 392 -GDAAAVLARALAAGINLRRVDDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred -CCHHHHHHHHHHCCceeccccCCEEEEEecccCCHHHHHHHHHHHc
Confidence 0236789999999999865544456654 6779999999999996
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.4e-06 Score=78.80 Aligned_cols=308 Identities=14% Similarity=0.130 Sum_probs=159.0
Q ss_pred HHHHHHHHHhhCCC-C-CeEEEeCCHHHHHHHHHHHhHhh--cC--------CcEEEEE-eCCCCCCchhHHHhcCCCCc
Q 011959 141 ENVLAEMVISAVPS-I-EMVRFVNSGTEACMGVLRLARAF--TG--------RERIIKF-EGCYHGHADPFLVKAGSGVA 207 (474)
Q Consensus 141 ~~~la~~l~~~~~~-~-~~v~~~~sGseA~~~al~~ar~~--~~--------~~~ii~~-~~~yhg~~~~~~~~~g~~~~ 207 (474)
+.++-.++.+..+. . .+-+|++||+-+|..++..||.- ++ =...|.| ..--|-+..-+....|.+..
T Consensus 143 E~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd 222 (510)
T KOG0629|consen 143 EEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTD 222 (510)
T ss_pred hHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCc
Confidence 34555555555542 2 36789999999999999998643 11 1234444 44445544444444443211
Q ss_pred cCCCCCCCCCCCCCCCceEEccCC-----CHHHHHHHHhcCCCC--eEEEEEccccCC--CCcccCCHHHHHHHHHHHHH
Q 011959 208 TLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENNKGE--IAAIILEPVVGN--SGFIAPKPDFLNAIRRITKE 278 (474)
Q Consensus 208 ~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~--~a~vi~ep~~~~--~G~i~~~~~~l~~l~~l~~~ 278 (474)
++..++-| ++++||+.|.+.+.+ +. ++++..-|. -|..-| |+.|+++|++
T Consensus 223 ----------------~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~P-f~vnaTaGTTV~GAFDd----L~~iadiC~k 281 (510)
T KOG0629|consen 223 ----------------HCIKVKTDERGKMIPDDLEKKILEAKAKGGVP-FFVNATAGTTVLGAFDD----LNGIADICEK 281 (510)
T ss_pred ----------------eeEEecccccCccchHHHHHHHHHHHhcCCCC-eEEEecCCceeeeccCc----HHHHHHHHHh
Confidence 12233322 689999887653222 22 333333343 366666 9999999999
Q ss_pred hCCEEEEeccccC-cccCCCccccccCCCC-ceeeh--hhhcCCCcceEEEEecHHH-HHhhcC--------CCCccccc
Q 011959 279 NGALLIFDEVMTG-FRLAYGGAQEYFGVTP-DLTTL--GKIIGGGLPVGAYGGRRDI-MEMVAP--------AGPMYQAG 345 (474)
Q Consensus 279 ~g~llI~DEv~~g-~r~g~~~~~~~~g~~p-di~t~--sK~l~~G~~iG~~~~~~~i-~~~~~~--------~~~~~~~~ 345 (474)
|++++.+|.+..| +-...-.-....|+.+ |-+|. -|-+|..++.|+++.+.+- ++.-.. ..+.+..+
T Consensus 282 ~~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS 361 (510)
T KOG0629|consen 282 HKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVS 361 (510)
T ss_pred cCEEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecc
Confidence 9999999999965 3111000112335543 55553 5999989999998887663 222211 11111111
Q ss_pred CCCCChHHHHHHH--------HHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEe--cCC
Q 011959 346 TLSGNPLAMTAGI--------HTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT--EGP 412 (474)
Q Consensus 346 t~~~~~~~~aaa~--------aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~--~~~ 412 (474)
-=.++-.. .-+. -.++.--. +..++++-++.+||.++|++..... ...+. ..-..-+.|. .+.
T Consensus 362 ~DTgdK~i-QCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~-~l~~~--~pe~~nv~fw~vp~~ 437 (510)
T KOG0629|consen 362 YDTGDKAI-QCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFE-MLFEL--EPEHVNVCFWYVPPS 437 (510)
T ss_pred cccccchh-hcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccce-ehhcC--CCceEEEeeccCchH
Confidence 00111111 1110 00110001 3456777788999999998753211 11111 0111122221 111
Q ss_pred CcCcccccccc---hHHHHHHHHHHHHCCeEec---ccCC--cceEE---ecCCcHHHHHHHHHHHHHHHhh
Q 011959 413 VYNFEDAKKSE---TTKFARFYRGMLEEGVYFA---PSQF--EAGFT---SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 413 ~~~~~~~~~~~---~~~~~~~~~~l~~~Gv~v~---~~~~--~~~~~---~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+........+ ...+-.+-..|+++|.... |-+. +.+|+ +.+.+++|+|.+++.|++.-+.
T Consensus 438 lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq~ 509 (510)
T KOG0629|consen 438 LRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQD 509 (510)
T ss_pred hccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhccC
Confidence 11111110001 1112345678888886543 3221 22333 4677999999999999877554
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-05 Score=79.58 Aligned_cols=278 Identities=15% Similarity=0.207 Sum_probs=127.7
Q ss_pred HHHHHHHHHhhCCCCCeE--EEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCC
Q 011959 141 ENVLAEMVISAVPSIEMV--RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP 218 (474)
Q Consensus 141 ~~~la~~l~~~~~~~~~v--~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~ 218 (474)
.-++-..+++++ +.+-+ -+..+++.+-|+++...|...++.+.+....+-|+.+...+...... .+
T Consensus 112 lfe~Qs~i~eLT-GmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~---------~g-- 179 (429)
T PF02347_consen 112 LFEYQSMICELT-GMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAP---------LG-- 179 (429)
T ss_dssp HHHHHHHHHHHH-TSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCH---------CC--
T ss_pred HHHHHHHHHHhh-CCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhh---------CC--
Confidence 346777788777 55543 34455665566554433443333234555567777666554432210 11
Q ss_pred CCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC
Q 011959 219 KGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (474)
Q Consensus 219 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (474)
.+++.++.++-.... .+++++|++..++ .-|.+.+ +++|.++++++|+++|+ -+- . -.+..
T Consensus 180 ----~~iv~~~~~~~~~~d------~~~~a~v~vq~Pn-~~G~~ed----~~~i~~~~h~~gal~~~-~ad--~~aL~~l 241 (429)
T PF02347_consen 180 ----IEIVEVPLDEDGTTD------DDDTAAVMVQNPN-TFGVFED----IKEIADIAHAAGALVIV-GAD--PNALGGL 241 (429)
T ss_dssp ----EEEEEE-BBTTCSB-------STTEEEEEEESS--TTSB--T----HHHHHHHHHHTT-EEEE-CGG--CCGCCTC
T ss_pred ----eEEEEecccccCCcc------ccCeEEEEeecCC-CCceEee----HHHHHHHHHHcCCEEEE-ecC--HHHHhCc
Confidence 134444433210000 3589998887654 4577776 99999999999999886 222 1 11111
Q ss_pred ccccccCCCCceee-hhhhcC-----CCcceEEEEecHHHHHhhcC----------CCCcc---------------cccC
Q 011959 298 GAQEYFGVTPDLTT-LGKIIG-----GGLPVGAYGGRRDIMEMVAP----------AGPMY---------------QAGT 346 (474)
Q Consensus 298 ~~~~~~g~~pdi~t-~sK~l~-----~G~~iG~~~~~~~i~~~~~~----------~~~~~---------------~~~t 346 (474)
-....+| .||++ .+|.|| ||--.|++.++++++..+-. .++.+ -.+.
T Consensus 242 ~~Pge~G--ADI~vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSN 319 (429)
T PF02347_consen 242 KSPGEYG--ADIVVGEHQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSN 319 (429)
T ss_dssp --GGGGT---SEEEECCTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT-
T ss_pred CChhhcC--ccEEeeCCCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhh
Confidence 1112233 36653 456554 34568888889887765531 01111 0122
Q ss_pred CCCChHHHH-HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccccc
Q 011959 347 LSGNPLAMT-AGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 422 (474)
Q Consensus 347 ~~~~~~~~a-aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~ 422 (474)
.+.|...++ ++...+..+-. .++-++...+..++.++|.+. ...++. ...|+-+.+. ...
T Consensus 320 IctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~-~~~~~~-----~~~f~e~v~~----------~~~ 383 (429)
T PF02347_consen 320 ICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI-YGLPFD-----NPFFFEFVVV----------FSK 383 (429)
T ss_dssp --SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TBECSS-----SSSBSSEEEE----------ESS
T ss_pred hhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccC-----CCCceeeeee----------cCC
Confidence 334444433 22222333322 345566777788888888765 111111 1111111111 111
Q ss_pred chHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHH
Q 011959 423 ETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAA 467 (474)
Q Consensus 423 ~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l 467 (474)
+ ....++.+.+...|+.........+.+ .=.+|+||||.++++|
T Consensus 384 ~-~~~~~l~~~~~~~gl~~~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 384 D-KEVEELLKRGIEGGLNLRYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp --HHHHHHHHTT----EEEGGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred c-HHHHHHHHHHHhcCCCccccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 1 333446666666676555444344434 3467899999999875
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00016 Score=68.36 Aligned_cols=313 Identities=15% Similarity=0.069 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHh---hcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCC
Q 011959 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA---FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 214 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~---~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 214 (474)
+.....|++.+.+.+ +.+.++-+.-|-.|=...+...+. ..++.+.+++.+.|+-.+.+.....|..+..+..+.
T Consensus 78 srs~~~L~~avkdif-Gfq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~~e- 155 (471)
T COG3033 78 SRSYYALADAVKDIF-GFQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVDE- 155 (471)
T ss_pred cccHHHHHHHHHHhc-CceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHHhcCCccccccccc-
Confidence 444567888888888 677888887666554443333222 223356666666555555555555554332221111
Q ss_pred CCCCCCCCCceEEccCC---CHHHHHHHHhcCC-CCeEEEEEccccC-CCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011959 215 PGVPKGATYETLTAPFN---DVSALENLFENNK-GEIAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (474)
Q Consensus 215 ~g~~~~~~~~~~~~~~~---d~~~le~~l~~~~-~~~a~vi~ep~~~-~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (474)
.....+..||. |++.|+++|++-+ +++..|++.-.+| .+|.-+. -.-++++++||++||+.++.|-+.
T Consensus 156 ------a~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVS-m~n~r~v~~ia~ky~ipvv~Da~R 228 (471)
T COG3033 156 ------AFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVS-MANMKAVYEIAKKYDIPVVMDAAR 228 (471)
T ss_pred ------cccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcch-HHhHHHHHHHHHHcCCcEEeehhh
Confidence 11122334442 8999999998754 3455444433333 3555444 444999999999999999999766
Q ss_pred cCcccCCCcccc-ccCC--------------CCceeehh-hhcCCC-cceEEE-EecHH----HHHhhcCCCCc-ccccC
Q 011959 290 TGFRLAYGGAQE-YFGV--------------TPDLTTLG-KIIGGG-LPVGAY-GGRRD----IMEMVAPAGPM-YQAGT 346 (474)
Q Consensus 290 ~g~r~g~~~~~~-~~g~--------------~pdi~t~s-K~l~~G-~~iG~~-~~~~~----i~~~~~~~~~~-~~~~t 346 (474)
.- ....|..+ .-|- ..|-.++| |- -| ..+|.+ +.+.+ +.+..+...-. ..+.|
T Consensus 229 fa--ENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KK--D~lvnmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~t 304 (471)
T COG3033 229 FA--ENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKK--DGLVNMGGFLCFKDDSFFDVYEECRTLVVVQEGFPT 304 (471)
T ss_pred hh--hhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccc--cceeccccEEEecCccHHHHHHHHHhheEeeccccc
Confidence 20 01011111 0111 11223333 21 13 247666 44444 44433321111 12234
Q ss_pred CCCC-hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchH
Q 011959 347 LSGN-PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (474)
Q Consensus 347 ~~~~-~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (474)
|++- -=.+.+....|...-+.+++++-.+..++|.++|.+. +++..-+..|.-..++..+ +.+....+.-
T Consensus 305 YGgl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~~~----GVpi~~paGGHavfvda~~-----~lphip~eqF 375 (471)
T COG3033 305 YGGLAGRDMEALAVGLREGVNFDYLAHRVAQVQYLADGLEEA----GVPIVQPAGGHAVFVDAGK-----FLPHIPAEQF 375 (471)
T ss_pred cCcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc----CCeeEecCCCceEEeehhh-----hcCCCChhhC
Confidence 4431 1123333334544445677777778888999998875 4444444444433333221 1111111111
Q ss_pred HHHHHHHHHH-HCCeEecccC-------C----------cceEE---ecCCcHHHHHHHHHHHHHHHh
Q 011959 426 KFARFYRGML-EEGVYFAPSQ-------F----------EAGFT---SLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 426 ~~~~~~~~l~-~~Gv~v~~~~-------~----------~~~~~---~~~~t~e~i~~~l~~l~~~~~ 472 (474)
-.+.|+-.|. +.||-..-.| . ..+|+ ..+-|.+++|..++.++++.+
T Consensus 376 paqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e 443 (471)
T COG3033 376 PAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKE 443 (471)
T ss_pred cHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHh
Confidence 1234443333 4465432211 0 12344 256699999999999988764
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.9e-07 Score=86.70 Aligned_cols=226 Identities=19% Similarity=0.274 Sum_probs=54.8
Q ss_pred ccCCCC--CHHHHHHHHHHHHhcCCCCC------CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCc
Q 011959 111 AIIGHA--DDQVLAALGETMKKGTSFGA------PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 182 (474)
Q Consensus 111 ~~lG~~--~p~v~~a~~~~~~~~~~~~~------~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~ 182 (474)
.+||-+ ++++.+++.+.+......-+ --.-...+.+.++..+ +.|..+++|+...|+..++. .+..++
T Consensus 11 TnLGRs~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~lt-gAeaA~VvNnnaAAv~L~l~---~la~~~ 86 (367)
T PF03841_consen 11 TNLGRSPLSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELT-GAEAALVVNNNAAAVLLALN---TLAKGK 86 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc---cccccc
Confidence 467764 68888888877655321111 0111234445555555 78899999999999988887 444455
Q ss_pred EEEEEeCC---CCCC--chhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEE-Ecc-c
Q 011959 183 RIIKFEGC---YHGH--ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII-LEP-V 255 (474)
Q Consensus 183 ~ii~~~~~---yhg~--~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi-~ep-~ 255 (474)
+||+..+- +-|. ....+..+|.....++.. ..-.+++.++.|.+ ++++++ +-+ +
T Consensus 87 EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGtt----------------N~t~~~Dye~AI~e---~Ta~ll~Vh~Sn 147 (367)
T PF03841_consen 87 EVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTT----------------NRTHLSDYEKAITE---NTAALLKVHTSN 147 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccc----------------cccccccccccccc---cccccccccccc
Confidence 56554331 1111 112222233221111100 00146777888874 566554 443 3
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc---C---CCccccccCCCCceeehh--hhcCCCcceEEEE
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL---A---YGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYG 326 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~---g---~~~~~~~~g~~pdi~t~s--K~l~~G~~iG~~~ 326 (474)
+...|+.-.++ ++++.+++++|++++|+|-.-..+ .. | ..-..+......|++||| |.+|| -..|.++
T Consensus 148 ~~i~GFt~~~~--~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGG-PQaGiI~ 224 (367)
T PF03841_consen 148 FRIQGFTGEVS--LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGG-PQAGIIV 224 (367)
T ss_dssp ---------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS--S-EEEE
T ss_pred ccccccccccc--HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCC-CCeEEEE
Confidence 33344433332 899999999999999999765222 11 1 122233444567999987 77774 4578889
Q ss_pred ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc
Q 011959 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 365 (474)
Q Consensus 327 ~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 365 (474)
|++++++.+++. -..-.+-..-+.+++..++|+...
T Consensus 225 Gkk~lI~~lk~~---pl~RalrvdK~tla~L~atL~~Y~ 260 (367)
T PF03841_consen 225 GKKELIEKLKKH---PLGRALRVDKLTLAALEATLRLYL 260 (367)
T ss_dssp EEHHHHHHHHHH---HHTTT-B--HHHHHHHHHHHHH--
T ss_pred eCHHHHHHHhhC---CCcceEeeCHHHHHHHHHHHHHHH
Confidence 999999998731 122345667888888889988654
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.4e-05 Score=72.75 Aligned_cols=200 Identities=23% Similarity=0.301 Sum_probs=110.8
Q ss_pred CCHHHHHHHHHH-HHh-----cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHhHhhcCCcEEEE
Q 011959 116 ADDQVLAALGET-MKK-----GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 186 (474)
Q Consensus 116 ~~p~v~~a~~~~-~~~-----~~~~~~~~~~~~~la~~l~~~~~~~~~v~~---~~sGseA~~~al~~ar~~~~~~~ii~ 186 (474)
+..+|++|+++. +.. .+.||+.+..++.|.+-+++.+ +.|..++ ..|||.|+..+|.- .+.++++++.
T Consensus 25 Nq~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vf-gaE~ALVRpq~vSGTHAi~~~Lfg--~LrpGD~ll~ 101 (403)
T PF06838_consen 25 NQLKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVF-GAEDALVRPQFVSGTHAIALALFG--VLRPGDELLS 101 (403)
T ss_dssp HHHHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHC-T-SEEEEETTS-SHHHHHHHHHHH--H--TT-EEEE
T ss_pred HHHHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHh-CchhhhhcccccchHHHHHHHHHh--cCCCCCeEEE
Confidence 345677777763 221 1457778888999999999999 6676665 35899999999984 3445677776
Q ss_pred EeC-CCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-----CHHHHHHHHhcCCCCeEEEEEccccCCCC
Q 011959 187 FEG-CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENNKGEIAAIILEPVVGNSG 260 (474)
Q Consensus 187 ~~~-~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (474)
..+ .|. .....+...|.+ .|-.+..+-....++.. |++.+++.++ +++++|.+--.-|=.-
T Consensus 102 ~tG~PYD-TL~~VIG~~g~~---------~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~---~~tk~v~IQRSrGYs~ 168 (403)
T PF06838_consen 102 ITGKPYD-TLEEVIGIRGNG---------PGSLKEFGIKYREVPLTEDGTIDWEAIKKALK---PNTKMVLIQRSRGYSW 168 (403)
T ss_dssp SSSS--C-CHHHHHTSSSSS---------SSSTGGGT-EEEE--B-TTSSB-HHHHHHHHH---TTEEEEEEE-S-TTSS
T ss_pred cCCCchh-hHHHHhCCCCCC---------CCChHHhCceeEEEeecCCCCcCHHHHHHhhc---cCceEEEEecCCCCCC
Confidence 655 342 222223222221 11111111122333321 7999999998 3678877743322211
Q ss_pred cccCCHHHHHHHHHHHHHh--CCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCc-c-eEEEEecHHHHH
Q 011959 261 FIAPKPDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGL-P-VGAYGGRRDIME 333 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~-~-iG~~~~~~~i~~ 333 (474)
.-.-.-+-++++.++.++. ++++++|..|..| -.- |-..+-.|++ +|=|-.|||+ | -||+++++++++
T Consensus 169 R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~-----EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe 243 (403)
T PF06838_consen 169 RPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQ-----EPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVE 243 (403)
T ss_dssp S----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS------GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceecccc-----CccccchhheeccceeCCCCCccCcCCEEechHHHHH
Confidence 1111222255555555554 7899999999887 332 2233456777 7889999996 5 566699999998
Q ss_pred hhc
Q 011959 334 MVA 336 (474)
Q Consensus 334 ~~~ 336 (474)
...
T Consensus 244 ~~a 246 (403)
T PF06838_consen 244 RAA 246 (403)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8e-05 Score=75.23 Aligned_cols=298 Identities=17% Similarity=0.238 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhc-----CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCC
Q 011959 139 LLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGLP 212 (474)
Q Consensus 139 ~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~-----~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~ 212 (474)
++..+|.+.|++.. +.|.+-| -|||.++=.+-++..|+|. +.+.|....-+-||.......+.|..+..+...
T Consensus 582 ~lf~~Le~~Lc~iT-G~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~MagmkvvpV~~~ 660 (1001)
T KOG2040|consen 582 QLFTELEKDLCEIT-GFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMKVVPVGCD 660 (1001)
T ss_pred HHHHHHHHHhheee-cccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcCCEEEEeecc
Confidence 44567888888887 5666655 6899998888888887873 346677777799998777777777655433222
Q ss_pred CCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc----
Q 011959 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV---- 288 (474)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv---- 288 (474)
....+ |+.+|++.-++|.++.+++++.-+... |+.. ++ +++++++.++||--+.+|-+
T Consensus 661 ~~G~i--------------d~~dLk~kaekh~~~Laa~MvTYPST~-GvfE--~~-i~d~cd~iHehGGQVYlDGANMNA 722 (1001)
T KOG2040|consen 661 ANGNI--------------DMVDLKAKAEKHKDNLAALMVTYPSTH-GVFE--EG-IDDICDIIHEHGGQVYLDGANMNA 722 (1001)
T ss_pred CCCCc--------------cHHHHHHHHHHhhhhhheeEEeccccc-cccc--cc-HHHHHHHHHhcCCEEEecCCCccc
Confidence 11111 789999988888888999888755333 4332 23 89999999999999999975
Q ss_pred ccCc-ccCCCcc-ccccCCCCceeehhhhc----CC-CcceEEEEecHHHHHhhcCCCCcc---------cccCCC----
Q 011959 289 MTGF-RLAYGGA-QEYFGVTPDLTTLGKII----GG-GLPVGAYGGRRDIMEMVAPAGPMY---------QAGTLS---- 348 (474)
Q Consensus 289 ~~g~-r~g~~~~-~~~~g~~pdi~t~sK~l----~~-G~~iG~~~~~~~i~~~~~~~~~~~---------~~~t~~---- 348 (474)
|.|+ |.|..++ ..|++ +-|+| || |-.+|-+..++.+...+-. .++. -.++.+
T Consensus 723 qVGlc~pGd~GaDV~HLN-------LHKTFcIPHGGGGPg~gPIgVK~HLapfLP~-HpVvs~~~~~~~~~~gsVsaaP~ 794 (1001)
T KOG2040|consen 723 QVGLCRPGDIGADVCHLN-------LHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS-HPVVSPGRPEDTSPVGSVSAAPW 794 (1001)
T ss_pred eecccCCccccccceeec-------ccceeeecCCCCCCCCCccchhhhccccCCC-CCccCCCCCCCCCCccceeccCC
Confidence 4677 6664332 22222 34544 33 3446666666666554431 1111 011222
Q ss_pred CChHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchH
Q 011959 349 GNPLAMTAGIHTLKRLKEPGTY---EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (474)
Q Consensus 349 ~~~~~~aaa~aal~~~~~~~~~---~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (474)
++........+.++.+-..++. +-..-+..|+.++|+.- +.+. .....| .++-+|.-+ . ++.+.....
T Consensus 795 Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h---Ykil-~~~~~~-~vaHEFIlD-~---r~fK~~agi 865 (1001)
T KOG2040|consen 795 GSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH---YKIL-FRGENG-LVAHEFILD-L---RPFKKTAGI 865 (1001)
T ss_pred CcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc---ccee-EecCCc-ceeeeeeee-c---hhhccccCC
Confidence 2333344445666766553332 22334567777777653 2322 112222 334444211 1 112222223
Q ss_pred HHHHHHHHHHHCCeEecccCCc---ceEE-e-cCCcHHHHHHHHHHHHHHHh
Q 011959 426 KFARFYRGMLEEGVYFAPSQFE---AGFT-S-LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 426 ~~~~~~~~l~~~Gv~v~~~~~~---~~~~-~-~~~t~e~i~~~l~~l~~~~~ 472 (474)
....++++|.+.|+..-....+ .+.+ + -.-+.+++|++++++-.+-+
T Consensus 866 eavDvAKRL~DYgFHaPTmswPV~gtLMIEPTESE~k~ElDRfcdAliSIre 917 (1001)
T KOG2040|consen 866 EAVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKAELDRFCDALISIRE 917 (1001)
T ss_pred cHHHHHHHHHhccCCCCccccccCCceEeccCccccHHHHHHHHHHHHHHHH
Confidence 4467899999999865433322 2233 2 23367899999999865543
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00038 Score=75.74 Aligned_cols=272 Identities=9% Similarity=0.099 Sum_probs=142.9
Q ss_pred HHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcC-CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCC
Q 011959 142 NVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK 219 (474)
Q Consensus 142 ~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~-~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~ 219 (474)
-++-..++++++ +...+-+..+++.+-|++++..|...+ +++|++. .+-|..+...+..... ..|+
T Consensus 112 ~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~-~~~hP~~~~v~~t~a~---------~~g~-- 179 (939)
T TIGR00461 112 LNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVA-KDLHPQTKSVLHTRAK---------PFGI-- 179 (939)
T ss_pred HHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEEC-CCCCcchHHHHHHHHH---------hcCc--
Confidence 466677777774 333446667777777755543222222 3565554 4555544433321110 1111
Q ss_pred CCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc---Cc-ccC
Q 011959 220 GATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT---GF-RLA 295 (474)
Q Consensus 220 ~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~---g~-r~g 295 (474)
+++.+ |+++|++.+ +++++++.. ++..|.+.. +++|.++++++|.++|++--.. ++ ++|
T Consensus 180 ----~v~~~---~~~~l~~~~-----~~~~v~~q~-Pn~~G~ied----~~~i~~~~h~~gal~~~~ad~~al~ll~~Pg 242 (939)
T TIGR00461 180 ----EVIVV---DCSDIKKAV-----DVFGCLLQY-PATDGSILD----YKQLIDALHSHKSLVSVAADLMALTLLTPPG 242 (939)
T ss_pred ----EEEEE---cHHHHhhcC-----CEEEEEEEC-CCCCeEEec----HHHHHHHHHHcCCEEEEEechHHhCCcCCHH
Confidence 23333 555555443 356665533 345677776 9999999999999999865552 22 233
Q ss_pred CCccccccCCCCcee-ehhhhcC-----CCcceEEEEecHHHHHhhcCC----------CCccc---------------c
Q 011959 296 YGGAQEYFGVTPDLT-TLGKIIG-----GGLPVGAYGGRRDIMEMVAPA----------GPMYQ---------------A 344 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~-t~sK~l~-----~G~~iG~~~~~~~i~~~~~~~----------~~~~~---------------~ 344 (474)
. +| .||+ ..+|.|| ||--.|++.++++++..+-.. ++.+. .
T Consensus 243 e------~G--aDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAt 314 (939)
T TIGR00461 243 H------YG--ADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKAT 314 (939)
T ss_pred H------cC--CcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccC
Confidence 2 23 3554 2345444 344488888888877665310 00000 0
Q ss_pred cCCCCChHHHHH-HHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccc
Q 011959 345 GTLSGNPLAMTA-GIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (474)
Q Consensus 345 ~t~~~~~~~~aa-a~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (474)
+..+.+...++. +...+..+-.+ ++-+++..+..++.++|.+.+.+ +.. ...|--+.+.-
T Consensus 315 SNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~--~~~----~~fF~~~~v~~---------- 378 (939)
T TIGR00461 315 SNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPHE--LIN----KTWFDTLTVKV---------- 378 (939)
T ss_pred cchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCc--ccC----CCccceEEEEe----------
Confidence 011112222221 11112333323 33455666777778777764221 111 11111111110
Q ss_pred ccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHH
Q 011959 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAE 468 (474)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~ 468 (474)
+ .....++.+.++++||.+.....+.+.+ .-..|++||+.+++.|.
T Consensus 379 -~-~~~~~~i~~~~~~~gi~l~~~~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 379 -G-NGISSELLKAAEEFNINLRAVDTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred -C-CCCHHHHHHHHHHCCCeeeecCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 0 0113678899999999988654444444 46789999999999984
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.5e-05 Score=71.26 Aligned_cols=273 Identities=18% Similarity=0.196 Sum_probs=142.3
Q ss_pred EeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcC-CCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHH
Q 011959 160 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG-SGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 238 (474)
Q Consensus 160 ~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g-~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~ 238 (474)
-+-||+.|+..+-.....+..+..|-+..|.+..+ .......| ..+...++.+.. ...+ |++.+..
T Consensus 104 QslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH-~~if~~aGf~tv~~Y~yWd~~---------~k~~---d~e~~Ls 170 (410)
T KOG1412|consen 104 QSLSGTGALRIAADFLATFYNKNTVYVSNPTWENH-HAIFEKAGFTTVATYPYWDAE---------NKCV---DLEGFLS 170 (410)
T ss_pred eeccccchhhhhHHHHHHhcccceeEecCCchhHH-HHHHHHcCCceeeeeeeecCC---------Ccee---cHHHHHH
Confidence 45689999988887554555566666666665443 33333333 111111111100 1111 6777777
Q ss_pred HHhcCCCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC----Ccccccc---CCCCcee
Q 011959 239 LFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY----GGAQEYF---GVTPDLT 310 (474)
Q Consensus 239 ~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~----~~~~~~~---g~~pdi~ 310 (474)
.|+..|+. ..+++.. -+|++| +-|..|.+..|.+.-++.+.+-++|-+|-||-.|. .++..++ |. +-++
T Consensus 171 dl~~APe~-si~iLhaCAhNPTG-mDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~-e~fv 247 (410)
T KOG1412|consen 171 DLESAPEG-SIIILHACAHNPTG-MDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGF-ELFV 247 (410)
T ss_pred HHhhCCCC-cEEeeeccccCCCC-CCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCC-eEEE
Confidence 77655433 3444433 456666 57778889999999999999999999999993332 2333332 21 1133
Q ss_pred --ehhhhcC-CCcceEEE--Ee-cHHHHHhhcCCCCcccccCCCCCh-HHHHHHHHHHHHhcCCCH-----------HHH
Q 011959 311 --TLGKIIG-GGLPVGAY--GG-RRDIMEMVAPAGPMYQAGTLSGNP-LAMTAGIHTLKRLKEPGT-----------YEY 372 (474)
Q Consensus 311 --t~sK~l~-~G~~iG~~--~~-~~~i~~~~~~~~~~~~~~t~~~~~-~~~aaa~aal~~~~~~~~-----------~~~ 372 (474)
+|+|-+| -+-|+|-+ ++ ++.++..+...-....-++++.+| .++......| ..+++ -.+
T Consensus 248 ~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL---~tP~lre~W~~sik~MssR 324 (410)
T KOG1412|consen 248 CQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVL---STPELREQWIQSIKTMSSR 324 (410)
T ss_pred EhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHh---cCHHHHHHHHHHHHHHHHH
Confidence 5999998 46788876 22 444444433110112233444332 2333333333 33322 234
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeeE-EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccCCcceE
Q 011959 373 LNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGF 450 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~ 450 (474)
+.+++..|++.|..+. ..+-..+ +...|+| . +..-. ..-++.|. ++.|++.+.| .+.
T Consensus 325 I~~MR~aLrd~L~aL~-TPGtWDHI~~QiGMF-S--yTGLt---------------p~qV~~li~~h~vyLl~~G--RIn 383 (410)
T KOG1412|consen 325 IKKMRTALRDHLVALK-TPGTWDHITQQIGMF-S--YTGLT---------------PAQVDHLIENHKVYLLSDG--RIN 383 (410)
T ss_pred HHHHHHHHHHHHHhcC-CCCcHHHHHhhccce-e--ecCCC---------------HHHHHHHHHhceEEEecCC--cEe
Confidence 4444555555555442 1111111 3334433 2 21110 12345555 5578887765 222
Q ss_pred EecCCcHHHHHHHHHHHHHHHhh
Q 011959 451 TSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 451 ~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+ ...+...+|....+|+++++.
T Consensus 384 i-sGLN~~NveyVAkAIde~Vr~ 405 (410)
T KOG1412|consen 384 I-SGLNMKNVEYVAKAIDETVRA 405 (410)
T ss_pred e-eccccccHHHHHHHHHHHHHh
Confidence 3 234556677777777777654
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0001 Score=69.26 Aligned_cols=206 Identities=20% Similarity=0.219 Sum_probs=112.3
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-----CCCCCCHHHHHHHHHHHh-hCC--
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-----SFGAPCLLENVLAEMVIS-AVP-- 153 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~la~~l~~-~~~-- 153 (474)
|..+-=|-|+| .|.+|+.|+ -|.|++|=++.+.... .-++..+....-++.+-. -.|
T Consensus 52 ~~KiNLgvGaY-Rdd~gKp~v--------------L~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakLa~G~~s~~i 116 (427)
T KOG1411|consen 52 PKKINLGVGAY-RDDNGKPYV--------------LPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKLALGDNSPVI 116 (427)
T ss_pred cceeeecccce-ecCCCCeee--------------eHHHHHHHHHHhhhcccchhccccchHHHHHHHHHHhhcCCchhh
Confidence 66677788887 456777764 1556665443333211 111223332222222211 111
Q ss_pred CCCeEEE--eCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC
Q 011959 154 SIEMVRF--VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (474)
Q Consensus 154 ~~~~v~~--~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 231 (474)
..+++.. +-|||.|+..+-.....+-...+|.+.+|++-.+ .......|. .+..+.|-
T Consensus 117 k~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh-~~if~~ag~-------------------~~~~yrYy 176 (427)
T KOG1411|consen 117 KEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNH-KNIFKDAGL-------------------PVKFYRYY 176 (427)
T ss_pred hccceeEEEeccCcchhhHHHHHHHhhccccceeecCCccccc-CccccccCc-------------------ceeeeeec
Confidence 1234443 4588888887776554555566777777765221 111111111 12222221
Q ss_pred -------CHHHHHHHHhcCCCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCC----cc
Q 011959 232 -------DVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG----GA 299 (474)
Q Consensus 232 -------d~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~----~~ 299 (474)
|.+.+-+-+.+.++. ..|++-. -+|++| +-|..+.+++|.++-++.+.+-++|-+|-||-.|.. ++
T Consensus 177 d~~t~gld~~g~ledl~~~p~g-s~ilLhaCaHNPTG-vDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~a 254 (427)
T KOG1411|consen 177 DPKTRGLDFKGMLEDLGEAPEG-SIILLHACAHNPTG-VDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQA 254 (427)
T ss_pred cccccccchHHHHHHHhcCCCC-cEEEeehhhcCCCC-CCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHH
Confidence 555554445544433 3444443 445555 678888899999999999999999999999933321 11
Q ss_pred cccc---CCCCcee--ehhhhcC-CCcceEEE
Q 011959 300 QEYF---GVTPDLT--TLGKIIG-GGLPVGAY 325 (474)
Q Consensus 300 ~~~~---g~~pdi~--t~sK~l~-~G~~iG~~ 325 (474)
..+| |... ++ +++|-+| -|-|+|++
T Consensus 255 vR~F~~~g~~~-~laQSyAKNMGLYgERvGa~ 285 (427)
T KOG1411|consen 255 VRLFVEDGHEI-LLAQSYAKNMGLYGERVGAL 285 (427)
T ss_pred HHHHHHcCCce-Eeehhhhhhcchhhhcccee
Confidence 1122 2211 22 6889988 47788887
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00055 Score=66.60 Aligned_cols=302 Identities=12% Similarity=0.071 Sum_probs=145.8
Q ss_pred HHHHHHHHHhhCC--CCCeEEEeCCHHH-HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCC
Q 011959 141 ENVLAEMVISAVP--SIEMVRFVNSGTE-ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (474)
Q Consensus 141 ~~~la~~l~~~~~--~~~~v~~~~sGse-A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~ 217 (474)
...|+..+.+..+ ....++..+-.|- ++...+...| ...+.+.|+...--|-...-++...|..+..++...
T Consensus 58 tn~l~~d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~-~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~---- 132 (389)
T PF05889_consen 58 TNSLVLDALRLAGLRSVKSCFVVPMATGMSLTLCLLALR-MRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVL---- 132 (389)
T ss_dssp HHHHHHHHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHH-HHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEE----
T ss_pred HHHHHHHHHHHcCCccccceEEEecccccHHHHHHHHHh-cccCCceEEEeeccccchHHHHHhcCCeEEEeeccC----
Confidence 3444444455554 3456777764443 2222333233 223445555555445444555555555333211100
Q ss_pred CCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC-
Q 011959 218 PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA- 295 (474)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g- 295 (474)
..+.+.. |++.+|+.+++.+.+..+.++.......+...+ + +.+|.++|++||+..|+.-+|+ + -.-
T Consensus 133 ----~~d~l~t---d~~~ie~~i~~~G~~~iLcvltttscfapr~~D--~-i~~IakiC~~~~IPhlvNnAYg-vQ~~~~ 201 (389)
T PF05889_consen 133 ----EGDELIT---DLEAIEAKIEELGADNILCVLTTTSCFAPRLPD--D-IEEIAKICKEYDIPHLVNNAYG-VQSSKC 201 (389)
T ss_dssp ----ETTEEEE---HHHHHHHHHHHHCGGGEEEEEEESSTTTTB-------HHHHHHHHHHHT--EEEEGTTT-TT-HHH
T ss_pred ----CCCeeec---cHHHHHHHHHHhCCCCeEEEEEecCccCCCCCc--c-HHHHHHHHHHcCCceEEccchh-hhHHHH
Confidence 0011222 688899988765445455555544444443332 2 9999999999999999999994 3 100
Q ss_pred --CCccccccCCCCce-eehhhhcCCCcceEEE-EecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CC
Q 011959 296 --YGGAQEYFGVTPDL-TTLGKIIGGGLPVGAY-GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PG 368 (474)
Q Consensus 296 --~~~~~~~~g~~pdi-~t~sK~l~~G~~iG~~-~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~ 368 (474)
..-.....|..|-. -++.|=|--+..-+-+ ...+..++.+.. .+-+-. +.+| ..-. ..+|..+-. ..
T Consensus 202 ~~~i~~a~~~GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~vs~---~YpGRa-s~sp-~ld~-~itLl~LG~~g~~~ 275 (389)
T PF05889_consen 202 MHLIQQAWRVGRVDAFVQSTDKNFMVPVGGAIMASFDPSGILAVSK---EYPGRA-SASP-SLDL-FITLLSLGCTGYGA 275 (389)
T ss_dssp HHHHHHHHHHSTCSEEEEEHHHHHCEESSHEEEEESSHHHHHHHHH---TSHSHB-TSHH-HHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcceeeeecCCCEEecCCCcEEEecCHHHHHHHHH---Hhhhhh-hccc-chHH-HHHHHHHhhhHHHH
Confidence 00000113444433 3677866411111222 235566776652 111111 1111 1122 222222222 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC-eeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeE----ecc
Q 011959 369 TYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY----FAP 443 (474)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~-~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~----v~~ 443 (474)
++....+...+++++|+++..+++- ..+.+...-.+.+.+..- .. . .......|...|..+||. +.+
T Consensus 276 ll~~r~~~f~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l--~~---~---~~k~~~~lgs~Lf~R~VsG~RvV~~ 347 (389)
T PF05889_consen 276 LLKERKASFPYLKERLKKWAEEVGERLLETPRNHISMAFTLDTL--YE---I---SQKDGTFLGSMLFKRGVSGIRVVTP 347 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTC--CT---C---CSSHHHHHHHHHHHTTEESSEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccc--hh---h---ccchhhhHHHHHHhCCcccceeecc
Confidence 6666777888889999888777662 222223333445544211 00 0 002235678888899763 222
Q ss_pred cC---------C--cceEE--ecCCcHHHHHHHHHHHHHHHh
Q 011959 444 SQ---------F--EAGFT--SLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 444 ~~---------~--~~~~~--~~~~t~e~i~~~l~~l~~~~~ 472 (474)
.+ + +++.+ .+..++||+|.++++|+++++
T Consensus 348 ~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 348 GGKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp SSCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 21 1 12233 367799999999999999875
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00046 Score=67.66 Aligned_cols=334 Identities=16% Similarity=0.154 Sum_probs=173.3
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-----CCCCCCCHHHHHHHHHHHhhCCCCCe--EEEeCCHHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-----TSFGAPCLLENVLAEMVISAVPSIEM--VRFVNSGTEAC 168 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----~~~~~~~~~~~~la~~l~~~~~~~~~--v~~~~sGseA~ 168 (474)
.||+.-+..+++. .+.+ +++..+-+.+.+.+. .-|+.....+.+....++.++.+.+. -.-|.||||+.
T Consensus 76 ld~~~~~~~vS~~--v~~~--~~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~ 151 (491)
T KOG1383|consen 76 LDGNPRLGLASGV--VYWG--EPELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESG 151 (491)
T ss_pred cCCCcccCeeeEE--EecC--CcchhhHHHHHHhhcCccCccccchhHHHHHHHHHHHHHHhcCCccccCccccccchHH
Confidence 4455333333432 4444 555555555555542 12455678888999999998864332 24577899997
Q ss_pred HHHHHHhHhhc----C--CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhc
Q 011959 169 MGVLRLARAFT----G--RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (474)
Q Consensus 169 ~~al~~ar~~~----~--~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (474)
..+.+.-|... + +..++... .-|...+-+...-+ +....++..++ .+.+ |+..+.+.+.+
T Consensus 152 l~~~k~~~~~r~~~k~I~~p~iv~~~-~v~~a~eK~a~yf~--v~l~~V~~~~~--------~~~~---D~~k~~~~i~e 217 (491)
T KOG1383|consen 152 LAAKKSYRNRRKAQKGIDKPNIVTPQ-NVHAAFEKAARYFE--VELREVPLDEG--------DYRV---DPGKVVRMIDE 217 (491)
T ss_pred HHHHHHHHHHHHhccCCCCccccchH-HHHHHHHHHHhhEE--EEEEeeecccc--------ceEe---cHHHHHHHhcc
Confidence 77776433221 1 22333321 12221111111000 00000111111 1122 78888888875
Q ss_pred CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH-hCCEEEEeccccCc-ccCCCccccccCCC----Cceeehhhhc
Q 011959 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGF-RLAYGGAQEYFGVT----PDLTTLGKII 316 (474)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-~g~llI~DEv~~g~-r~g~~~~~~~~g~~----pdi~t~sK~l 316 (474)
++.+++.+-.+-+.|.+-+ .++|.++.-+ +++.+.+|-.-.|| -.........||+. +-+.+-+.-+
T Consensus 218 ---Nti~lv~~~~~~p~G~~e~----ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKY 290 (491)
T KOG1383|consen 218 ---NTIMLVGSLPNFPTGEIED----VEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKY 290 (491)
T ss_pred ---ceEEEEEEcCCCCccchhh----HHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCceeEeecccee
Confidence 6888888877777888888 8999999998 99999999999999 54111222234442 2233334223
Q ss_pred C---CCcceEEEEec-HHH-HHhhcC----CCCcccccCCCCCh--HHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHH
Q 011959 317 G---GGLPVGAYGGR-RDI-MEMVAP----AGPMYQAGTLSGNP--LAMTAGIHTLKRLKEPG---TYEYLNKITGELTQ 382 (474)
Q Consensus 317 ~---~G~~iG~~~~~-~~i-~~~~~~----~~~~~~~~t~~~~~--~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~ 382 (474)
| .| +||++-+ +++ .+.+.- .+..+-..|..++- .-.++..+++-.+-.++ ..+++.+..+.|++
T Consensus 291 Gl~~~G--~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~e 368 (491)
T KOG1383|consen 291 GLAPAG--SSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLRE 368 (491)
T ss_pred eeeecC--cEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3 23 7787543 332 222210 01122222333322 22333344443333344 44556677788888
Q ss_pred HHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc---ceEEecCCcHHH
Q 011959 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE---AGFTSLAHSSDD 459 (474)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---~~~~~~~~t~e~ 459 (474)
+++++. ... +-+...+ .+...+... ...-++.+.|.+.|-.+..-..+ ++++...+..++
T Consensus 369 gie~i~-~i~----i~gkp~v-s~~~~~s~~-----------~~i~elsd~l~~~GW~lnalq~P~a~Hi~vt~~~~~~~ 431 (491)
T KOG1383|consen 369 GIENIK-GIK----IVGKPLV-SFILFGSND-----------VNIFELSDLLRKKGWILNALQFPAAIHICVTRVHARED 431 (491)
T ss_pred hhhccc-cce----ecCCCcE-EEEEccCCc-----------cchhhhhHHHHhcCcCccccCCCCceEEEEEeeeccHH
Confidence 888742 111 1122222 222221111 11246788999999877654433 344445555544
Q ss_pred -HHHHHHHHHHHHhh
Q 011959 460 -IQHTITAAEKVLRQ 473 (474)
Q Consensus 460 -i~~~l~~l~~~~~~ 473 (474)
.|+++.-+++++.+
T Consensus 432 ~A~~~v~Di~~~~~e 446 (491)
T KOG1383|consen 432 VADRFVADIRKVVEE 446 (491)
T ss_pred HHHHHHHHHHHHHHH
Confidence 57777778777765
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00019 Score=67.98 Aligned_cols=194 Identities=11% Similarity=0.059 Sum_probs=103.9
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcC-CCcce
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPV 322 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~-~G~~i 322 (474)
...=+++.|+| +.|.+.- .+++.-+..+|.|=+|- .+. +..--....-||+ |+||.-| +|-|+
T Consensus 138 ~~IElVTSPNN-PDG~lr~---------~V~~g~~~k~I~D~AYY--WPh--yTpI~~~aD~DiMLFT~SK~TGHAGSR~ 203 (363)
T PF04864_consen 138 PYIELVTSPNN-PDGQLRE---------AVLNGSSGKVIHDLAYY--WPH--YTPITAPADHDIMLFTLSKLTGHAGSRF 203 (363)
T ss_dssp GEEEEEESS-T-TT---------------SSTTTEEEEEEE-TT---STT--TS---S-B--SEEEEEHHHHCS-GGG-E
T ss_pred CeEEEEeCCCC-Ccccccc---------hhcCCCCcceeeeeeee--ccc--ccccCCCCCCceEEEEEecccCcccccc
Confidence 44455566654 4444321 23355566789998884 111 0000011234665 8999999 89999
Q ss_pred EEEEecH-HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011959 323 GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--------PGTYEYLNKITGELTQGIIDAGKKAGH 393 (474)
Q Consensus 323 G~~~~~~-~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--------~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (474)
||.+.++ ++.+.+. .+...+|.+.+-=+|.-++..|+.+.+ .++.+.-.+..+.--++|+++......
T Consensus 204 GWAlVKD~~Va~kM~---~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~r 280 (363)
T PF04864_consen 204 GWALVKDEEVAKKMT---KYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKR 280 (363)
T ss_dssp EEEEES-HHHHHHHH---HHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred ceeeecCHHHHHHHH---HHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9997765 4555554 344567888887777777777776533 134443333333333444444322210
Q ss_pred -------------e-eEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----CcceEEecC
Q 011959 394 -------------A-ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLA 454 (474)
Q Consensus 394 -------------~-~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~~~~~ 454 (474)
. ........+.|+....+.. ..+...|++.||+-+.+. ...+|+++.
T Consensus 281 FSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed--------------~DC~~~l~~~~I~tr~G~~fga~~ryVRlSml 346 (363)
T PF04864_consen 281 FSLQKFSPQYCNFFKRVREPSPAFAWLKCEREED--------------EDCYAVLREAKIITRSGVLFGADSRYVRLSML 346 (363)
T ss_dssp EEE---SCEEETTTTCEEE---SEEEEEESSCGG--------------SSHHHHHHCTTEEEEEGGGGTS-TTEEEEESS
T ss_pred eecCcCCchhccccccccCCCCCeEEEecCCccc--------------ccHHHHHHhCCcccCCCCccCCCCCeEEEecc
Confidence 0 0122345566666543211 346677788899887662 346899999
Q ss_pred CcHHHHHHHHHHHHHH
Q 011959 455 HSSDDIQHTITAAEKV 470 (474)
Q Consensus 455 ~t~e~i~~~l~~l~~~ 470 (474)
.++++.|.++++|...
T Consensus 347 ~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 347 KRDDDFDQLLERLSKL 362 (363)
T ss_dssp S-HHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999999753
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0043 Score=57.71 Aligned_cols=330 Identities=16% Similarity=0.095 Sum_probs=175.9
Q ss_pred ccCCCCCHHHHHHHHHHHHhc---CCCC---C--C-CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhH-hhc
Q 011959 111 AIIGHADDQVLAALGETMKKG---TSFG---A--P-CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR-AFT 179 (474)
Q Consensus 111 ~~lG~~~p~v~~a~~~~~~~~---~~~~---~--~-~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar-~~~ 179 (474)
|.||..+....+.+.+.+++- ..+| + | ...-+..-..++...+ ..+.|-+.||=+--+. .+.+.. .-|
T Consensus 74 NSLGLmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~iVGA~e~EvavmNsLTvNlh-~Ll~sFyKPT 152 (465)
T KOG3846|consen 74 NSLGLMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPIVGAQENEVAVMNSLTVNLH-SLLISFYKPT 152 (465)
T ss_pred cccccCchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhhccCCchhhhhHhhhhhHHH-HHHHHhcCCc
Confidence 889998888888888888761 1121 1 1 0111222333444443 2456777776554433 333321 112
Q ss_pred -CCcEEEEEeCCCCCCchhHHHh---cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 180 -GRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 180 -~~~~ii~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
+|-+|+.-..+|...+...-+. -|..+.. ....--|+. +.+++ ..+++-+.|+.+++.++.|.+..+
T Consensus 153 ekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~---sm~~iePRE-GEetl-----RteDILd~IEkngDeiA~v~fSGv 223 (465)
T KOG3846|consen 153 EKRFKILLEKKAFPSDHYAIESQCKLHGISPEN---SMIQIEPRE-GEETL-----RTEDILDTIEKNGDEIALVCFSGV 223 (465)
T ss_pred chhhhhhhccCCCCchHHHHHhhhhhcCCChHH---heEEecccc-cccch-----hHHHHHHHHHhcCCeEEEEEeecc
Confidence 3556666666665544333222 1221110 000000000 00111 356777788888889999999999
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC-CccccccCCCCceeehhhhcCCCc-ceEEEEecHHHHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIME 333 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g~~pdi~t~sK~l~~G~-~iG~~~~~~~i~~ 333 (474)
+--+|.... +.+|-.--+..|+++=+|=+|. + |. ..-...||++--.-|-=|-+.+|- .||.....++...
T Consensus 224 qyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA-v--gNVpL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHekh~~ 296 (465)
T KOG3846|consen 224 QYYTGQYFD----IGAITFAGQFKGCLVGFDLAHA-V--GNVPLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEKHTK 296 (465)
T ss_pred eeecccccc----hhhhhhcccCCCcEechhhhhh-h--cCCceEEeecCCceEEEeeecccccCCCccceeeeehhhhc
Confidence 988898887 6666655555688888888884 1 11 122223555333334457665432 4666644433221
Q ss_pred hhcC----------CCC-----------cccccCCCCChHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh-
Q 011959 334 MVAP----------AGP-----------MYQAGTLSGNPLAM-TAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK- 390 (474)
Q Consensus 334 ~~~~----------~~~-----------~~~~~t~~~~~~~~-aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~- 390 (474)
...+ .++ ...+.-.+.+|+-. ++....|+....-. .+.++++.-+|-.-|+.+...
T Consensus 297 ~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~-~~~lRkrS~lLTgYleyL~k~~ 375 (465)
T KOG3846|consen 297 ESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFN-INELRKRSLLLTGYLEYLLKAS 375 (465)
T ss_pred chhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhh-HHHHhhhhhhHHhHHHHHHHHh
Confidence 1110 001 11122234444443 34446677665422 556666655555555444321
Q ss_pred ----cCC-----------eeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE---e
Q 011959 391 ----AGH-----------AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT---S 452 (474)
Q Consensus 391 ----~~~-----------~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~---~ 452 (474)
++. +..+..+|.-+.+.|..+ ...+.+.|.++|++.-....+.+|+ +
T Consensus 376 ~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp---------------~~~vfqeL~krGv~~DkR~PNvIRvAPvp 440 (465)
T KOG3846|consen 376 KGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSP---------------TPKVFQELHKRGVIGDKRRPNVIRVAPVP 440 (465)
T ss_pred cccCchhhhcceeEEEeCCcccccccceEEEEeCCC---------------chHHHHHHHHcCeeccccCCCceEeecch
Confidence 111 112223344444444322 1467889999999987776667776 4
Q ss_pred cCCcHHHHHHHHHHHHHHHhh
Q 011959 453 LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+..+-.|+-.+++.|.+++..
T Consensus 441 LYN~f~Dvy~f~n~L~e~~d~ 461 (465)
T KOG3846|consen 441 LYNTFSDVYIFVNALNEAMDK 461 (465)
T ss_pred hhccHHHHHHHHHHHHHHHHH
Confidence 777999999999999998764
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.039 Score=60.29 Aligned_cols=299 Identities=14% Similarity=0.104 Sum_probs=149.0
Q ss_pred ccCCCCCHHHH-HHHHHHHHhcCCCC-CCC-------HHHHHHHHHHHhhCCCCC--eEEEeCCHHHHHHHHHHHhHhhc
Q 011959 111 AIIGHADDQVL-AALGETMKKGTSFG-APC-------LLENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLARAFT 179 (474)
Q Consensus 111 ~~lG~~~p~v~-~a~~~~~~~~~~~~-~~~-------~~~~~la~~l~~~~~~~~--~v~~~~sGseA~~~al~~ar~~~ 179 (474)
-+.+|--|.|+ +.+.+.-+-.+.|. |.. +..-++-..+++++ +.+ ..-+...+|.+-| |+.+++.++
T Consensus 87 G~y~~~~P~vi~~~i~~~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~Lt-Gm~vaNASl~D~atA~aE-A~~ma~~~~ 164 (954)
T PRK12566 87 GYHGTVTPTVILRNVLENPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLT-GLDLANASLLDEATAAAE-AMALAKRVA 164 (954)
T ss_pred cccCCcCcHHHHHHHHhCchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHh-CchhhhhhhccchhHHHH-HHHHHHHHh
Confidence 55666555554 65554322123232 221 22235666677777 333 3233445555555 333344444
Q ss_pred C--CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccC
Q 011959 180 G--RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (474)
Q Consensus 180 ~--~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (474)
+ +++|+ .+.+-|..+...+..... ..|+ +++. +++++.+. +++++|++..+ +
T Consensus 165 ~~k~~~~~-v~~~~hP~~~~v~~t~~~---------~~g~------~i~~------~~~~~~~~---~~~~~v~vq~P-~ 218 (954)
T PRK12566 165 KSKSNRFF-VDEHCHPQTLSVLRTRAE---------GFGF------ELVV------DAVDNLAA---HAVFGALLQYP-D 218 (954)
T ss_pred hcCCCEEE-ECCCCCHHHHHHHHHhhh---------cCCc------EEEE------cchhhcCC---CCEEEEEEECC-C
Confidence 4 44544 455666655444432211 1111 1111 33444333 36888888543 3
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEE--eccccCc--ccCCCccccccCCCCceee-----hhhhcC-CCcceEEEEe
Q 011959 258 NSGFIAPKPDFLNAIRRITKENGALLIF--DEVMTGF--RLAYGGAQEYFGVTPDLTT-----LGKIIG-GGLPVGAYGG 327 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~--DEv~~g~--r~g~~~~~~~~g~~pdi~t-----~sK~l~-~G~~iG~~~~ 327 (474)
.-|.+.. +++|.++++++|+++|+ |=.--++ .+|. +| .||++ ||=-++ ||--.|++.+
T Consensus 219 ~~G~i~d----~~~i~~~~h~~gal~~~~~d~laL~ll~~Pge------~G--ADI~vG~~Q~fGvp~~~GGP~ag~~a~ 286 (954)
T PRK12566 219 THGEIRD----LRPLIDQLHGQQALACVAADLLSLLVLTPPGE------LG--ADVVLGSTQRFGVPMGYGGPHAAYFAC 286 (954)
T ss_pred CceEEcc----HHHHHHHHHHcCCEEEEEeCHHHHhCCCChhh------cC--CcEEeeCCCcCCCCCCCCCCCeeeeee
Confidence 4577765 89999999999998773 2222222 2332 23 35542 344444 4555888888
Q ss_pred cHHHHHhhcC----------CCCcc---------------cccCCCCChHHHHHHHHHHHHh-cCCCH---HHHHHHHHH
Q 011959 328 RRDIMEMVAP----------AGPMY---------------QAGTLSGNPLAMTAGIHTLKRL-KEPGT---YEYLNKITG 378 (474)
Q Consensus 328 ~~~i~~~~~~----------~~~~~---------------~~~t~~~~~~~~aaa~aal~~~-~~~~~---~~~~~~~~~ 378 (474)
+++++..+-. .++.+ -.+..+.|..-++.+.+..-.+ -.+++ -+++..+..
T Consensus 287 ~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~ 366 (954)
T PRK12566 287 RDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTA 366 (954)
T ss_pred hHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 8887765531 00000 0111122322222222222111 22333 344556677
Q ss_pred HHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCc
Q 011959 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHS 456 (474)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t 456 (474)
+|.+.|.+.+.+ .. ....|--+.+.- .. ...++.+..+++|+-++-.....+.++ =.+|
T Consensus 367 ~l~~~l~~~g~~--~~----~~~fF~~~~v~~-----------~~--~~~~~~~~a~~~~~n~r~~~~~~~~~s~de~~~ 427 (954)
T PRK12566 367 ILAAGLEAKGIK--RL----NRHFFDTLTLEV-----------GG--AQAAIIESAEAARINLRILGRGRLGVSLDETCD 427 (954)
T ss_pred HHHHHHHhcCCc--cc----cCCccceEEEEc-----------cC--CHHHHHHHHHHCCCeeEEeCCCeEEEEeCCCCC
Confidence 788888764211 11 111111111110 00 135678888899998877655555555 4779
Q ss_pred HHHHHHHHHHHH
Q 011959 457 SDDIQHTITAAE 468 (474)
Q Consensus 457 ~e~i~~~l~~l~ 468 (474)
++|++.++++|.
T Consensus 428 ~~~~~~~~~~f~ 439 (954)
T PRK12566 428 EATVARLFDIFL 439 (954)
T ss_pred HHHHHHHHHHhc
Confidence 999999999883
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.032 Score=53.41 Aligned_cols=277 Identities=17% Similarity=0.116 Sum_probs=133.7
Q ss_pred eCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHH
Q 011959 161 VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240 (474)
Q Consensus 161 ~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l 240 (474)
.-||+-||..+... .....++|...+-.--|+........+..+... .-.+..+|......+-.+ |-|.||+..
T Consensus 112 p~SGSPANfavYta--ll~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~-SiyFeSmPYkv~~~TG~I---DYD~Le~~A 185 (477)
T KOG2467|consen 112 PYSGSPANFAVYTA--LLKPHERIMGLDLPSGGHLSHGYQTPTKKISAT-SIYFESMPYKVDPSTGYI---DYDKLEKTA 185 (477)
T ss_pred cCCCCchhhHHHhh--hcCCCCeeeeccCCCCCccccccccCCceeeee-eeecccCceeeCCCCCce---ehHHHHHHH
Confidence 34799999888773 345667888776443232211111111111000 001111111001011111 677887765
Q ss_pred hcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCC-CccccccCCCCcee--ehhhh
Q 011959 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAY-GGAQEYFGVTPDLT--TLGKI 315 (474)
Q Consensus 241 ~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~-~~~~~~~g~~pdi~--t~sK~ 315 (474)
... +++.+|+-.. .--..+. ..+++++|++.|++|++|=+| +|+ -.+. ...++|. ||+ |.-|+
T Consensus 186 ~~f--rPk~iiaG~S--aY~R~~D----YaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~----DiVTTTTHKs 253 (477)
T KOG2467|consen 186 TLF--RPKLIIAGTS--AYSRLID----YARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYC----DIVTTTTHKS 253 (477)
T ss_pred Hhc--CCcEEEeccc--cchhhcc----HHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccccc----ceeecccccc
Confidence 544 4566665321 1111233 889999999999999999999 777 4332 3334443 555 46799
Q ss_pred cCCCcceEEEEecHHHH---------------HhhcC-CCCcccccCCCCChHHHHHHHHHHHHhcCC---CHHHHHHHH
Q 011959 316 IGGGLPVGAYGGRRDIM---------------EMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKI 376 (474)
Q Consensus 316 l~~G~~iG~~~~~~~i~---------------~~~~~-~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~ 376 (474)
|-| -|.|-+.-++-+. +.+.. .-+..+++.++- .+++...+|+....+ .+.+++.++
T Consensus 254 LRG-PRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNh---tIaalAvALkQa~tpefk~Yq~qV~~N 329 (477)
T KOG2467|consen 254 LRG-PRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNH---TIAALAVALKQAMTPEFKEYQKQVLKN 329 (477)
T ss_pred ccC-CcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcc---hHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 874 3444444443221 11110 012334444332 233333455554443 455666777
Q ss_pred HHHHHHHHHHHhhhcCCeeEEee-eceeEEEEEecCCCcCcccccccchHHHHHHHHHH---HHCCeEeccc---CCcce
Q 011959 377 TGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM---LEEGVYFAPS---QFEAG 449 (474)
Q Consensus 377 ~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~Gv~v~~~---~~~~~ 449 (474)
.+.|.+.|.+.+.+. ...| .-.++.+++.... -+....+.+++.+ +.+.-+.... ....+
T Consensus 330 akala~~l~~~Gy~l----vtgGTDnHlvLvDLr~~G---------~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGi 396 (477)
T KOG2467|consen 330 AKALASALISRGYKL----VTGGTDNHLVLVDLRPKG---------VDGARVEKVLELCHIALNKNTVPGDKSALSPGGI 396 (477)
T ss_pred HHHHHHHHHHcCceE----ecCCccceEEEEeccccC---------CchHHHHHHHHHhhhhhcCCcCCCCccccCCCce
Confidence 777877777653221 1111 1224444543211 1233333333332 3332221111 12235
Q ss_pred EE------ecCCcHHHHHHHHHHHHHHHh
Q 011959 450 FT------SLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 450 ~~------~~~~t~e~i~~~l~~l~~~~~ 472 (474)
|+ +-...++|.++..+-|.++++
T Consensus 397 RiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 397 RIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred eccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 55 234568898888888887753
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.037 Score=51.53 Aligned_cols=197 Identities=21% Similarity=0.269 Sum_probs=112.7
Q ss_pred CCHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHhhCCCCC----eEEEeCCHHHHHHHHHHHhHhhcCCcEEE
Q 011959 116 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIE----MVRFVNSGTEACMGVLRLARAFTGRERII 185 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~------~~~~~~~~~~~~~la~~l~~~~~~~~----~v~~~~sGseA~~~al~~ar~~~~~~~ii 185 (474)
+..+|++|.++.--. .+.||+-+..+..|.+-.++.++ .| +..| -||+.|+..||-- .+.++++.+
T Consensus 36 Nq~kVL~AF~~~rvs~~hf~~stGYGydD~GRdtLe~vyA~vf~-aE~a~VRpq~-isGTHAI~~aLfg--~LRpgDell 111 (416)
T COG4100 36 NQKKVLEAFRHHRVSESHFTGSTGYGYDDLGRDTLERVYAQVFG-AEAALVRPQI-ISGTHAIACALFG--ILRPGDELL 111 (416)
T ss_pred HHHHHHHHHHhcccchhccCCCCCCCccccchhHHHHHHHHHhc-cccceeeeee-ecchhHHHHHHHh--ccCCCCeEE
Confidence 345677777653211 13456666667888888888884 33 3334 3699999999984 345667777
Q ss_pred EEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-----CCHHHHHHHHhcCCCCeEEEEEccccCCCC
Q 011959 186 KFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEPVVGNSG 260 (474)
Q Consensus 186 ~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (474)
...+.=.-...-.+...|.+.-.+ . ..++ ....+|. -|.+.++..+. +++++|.+--.. |
T Consensus 112 ~i~G~PYDTLeevIG~rg~~~gSL--~-dfgi------~Y~~v~Lt~~gkiD~~~v~~~i~---~~tkli~IQRS~---G 176 (416)
T COG4100 112 YITGSPYDTLEEVIGLRGEGQGSL--K-DFGI------KYKAVPLTADGKIDIQAVKTAIS---DRTKLIGIQRSK---G 176 (416)
T ss_pred EecCCcchhHHHHhccCCCCcccH--H-HhCc------ceeecccccCCcccHHHHHHhcC---ccceEEEEEecc---C
Confidence 776542221222222222211000 0 0000 0111111 17888888887 467777764332 2
Q ss_pred ccc-CC--HHHHHHHHHHHHHh--CCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCc--ceEEEEecHH
Q 011959 261 FIA-PK--PDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGL--PVGAYGGRRD 330 (474)
Q Consensus 261 ~i~-~~--~~~l~~l~~l~~~~--g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~--~iG~~~~~~~ 330 (474)
.-+ |+ -.-++++.++.++- ++++.+|..|..| -.- +-..+-.|++ ++=|--|||+ --||+.++++
T Consensus 177 Y~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~-----EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~ 251 (416)
T COG4100 177 YAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEK-----EPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAE 251 (416)
T ss_pred cCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhcc-----CccccchhhhccceeeCCCCceeeccceeechHH
Confidence 222 11 12266666666664 6889999999887 321 2233455776 6779888886 3567789999
Q ss_pred HHHhhc
Q 011959 331 IMEMVA 336 (474)
Q Consensus 331 i~~~~~ 336 (474)
+++...
T Consensus 252 ~ve~~~ 257 (416)
T COG4100 252 LVEAAA 257 (416)
T ss_pred HHHhhc
Confidence 988654
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.1 Score=51.67 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHhhCC----------CCCeEEEeCCHHHHHHHHHHHhHhhc-----CC-----------cEEEEEeCCC
Q 011959 138 CLLENVLAEMVISAVP----------SIEMVRFVNSGTEACMGVLRLARAFT-----GR-----------ERIIKFEGCY 191 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~----------~~~~v~~~~sGseA~~~al~~ar~~~-----~~-----------~~ii~~~~~y 191 (474)
++++.-..+||.+.+. +..--++-.|.+|++..++..||.-. .+ +-|.++..--
T Consensus 112 TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqa 191 (511)
T KOG0628|consen 112 TELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQA 191 (511)
T ss_pred HHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcc
Confidence 4555555566655441 22223444668999999998776431 11 2244444444
Q ss_pred CCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC--CCCeEEEEEccccCCCCcccCCHHHH
Q 011959 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGEIAAIILEPVVGNSGFIAPKPDFL 269 (474)
Q Consensus 192 hg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (474)
|....-+....+.....++.....++ +.+.|+++|++. .+-+..+++ ...|++|...-.. +
T Consensus 192 hssveka~~i~~VklR~l~td~n~~m--------------r~~~L~~AIe~D~arGlIPf~v~-at~GTT~~ca~D~--l 254 (511)
T KOG0628|consen 192 HSSVEKACLIAGVKLRALPTDENFGM--------------RGDTLRKAIEEDIARGLIPFFVC-ATLGTTSSCAFDE--L 254 (511)
T ss_pred cchHHHhHhhcceeEEEeecccCcCC--------------CHHHHHHHHHHHHhCCCccEEEE-EeecCcccccccc--H
Confidence 44433333333322111100000011 578888888752 123444444 4446665544332 9
Q ss_pred HHHHHHHHHhCCEEEEeccccC
Q 011959 270 NAIRRITKENGALLIFDEVMTG 291 (474)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g 291 (474)
.+|..+|+++|++|.+|.+|.|
T Consensus 255 ~elg~Vc~~~glWLHVDAAYAG 276 (511)
T KOG0628|consen 255 EELGPVCREEGLWLHVDAAYAG 276 (511)
T ss_pred HHhcchhhhcCEEEEeehhhcc
Confidence 9999999999999999999975
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.18 Score=48.56 Aligned_cols=197 Identities=18% Similarity=0.081 Sum_probs=109.3
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCC-CCceeeh--hhhcC-CCcce
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGV-TPDLTTL--GKIIG-GGLPV 322 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~-~pdi~t~--sK~l~-~G~~i 322 (474)
.+-|...++....|+-.++.. .+... .++|+|-.-.=| +. ..++ +-|++.+ .|-+| .| +
T Consensus 145 ~ayv~~~~NeTi~Gv~v~~~p------~~~~~--~~~v~D~SS~il------sr-~iDvsk~dviyagaQKnlGpaG--l 207 (365)
T COG1932 145 DAYVHFCWNETISGVEVPELP------DIGSD--GLLVADASSAIL------SR-PIDVSKYDVIYAGAQKNLGPAG--L 207 (365)
T ss_pred ccEEEEecCCcccceEccCCC------CCCCC--ceEEEecccHHh------cC-CCChhHcceEEEehhhccCccc--e
Confidence 455777777666777666322 12222 788888443211 11 1122 2356654 59999 47 8
Q ss_pred EEEEecHHHHHhhcCC-CC--------cccccCCCCChHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 323 GAYGGRRDIMEMVAPA-GP--------MYQAGTLSGNPLAM-TAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 323 G~~~~~~~i~~~~~~~-~~--------~~~~~t~~~~~~~~-aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
+.++.++++++.+... -+ ....++|+.+|..+ ....-+++.+...+=++.+.++.+.-.+.|-+..++.+
T Consensus 208 tvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~ 287 (365)
T COG1932 208 TVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSD 287 (365)
T ss_pred EEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8899999999888642 11 23456776665443 33445677777644334444444333334433333333
Q ss_pred Cee---EEeeeceeE-EEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEEe--cCCcHHHHHHHH
Q 011959 393 HAI---CGGYISGMF-GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTI 464 (474)
Q Consensus 393 ~~~---~v~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~~--~~~t~e~i~~~l 464 (474)
... .-..+..|- .|.+ .+.+....|...+.++|+..-.+. .+.+|.+ -++..|+++.++
T Consensus 288 fy~~~v~~~~RS~mnV~f~~-------------~~~~ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~veaL~ 354 (365)
T COG1932 288 FYRNLVAKANRSRMNVTFTL-------------VDAELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALT 354 (365)
T ss_pred ccccccchhhccceeEEEEc-------------CcHHHHHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHHHHHHH
Confidence 111 112222221 1222 234455778888888887665442 1235554 577899999999
Q ss_pred HHHHHHHhh
Q 011959 465 TAAEKVLRQ 473 (474)
Q Consensus 465 ~~l~~~~~~ 473 (474)
+-++++.++
T Consensus 355 ~fm~~f~~~ 363 (365)
T COG1932 355 DFMDWFEET 363 (365)
T ss_pred HHHHHHHHh
Confidence 999888654
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0097 Score=51.04 Aligned_cols=73 Identities=8% Similarity=0.087 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-----CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCC
Q 011959 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (474)
Q Consensus 118 p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-----~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (474)
+.+++++.+. .....+.+..++++++++++.++++ .+++|++++|+++|++.+++. ....++.|++.++.|.
T Consensus 76 ~~i~~~~~~~-a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~--l~dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 76 EGTIDSFKDI-ALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFC--IADPGDAFLVPTPYYA 152 (153)
T ss_pred HHHHHHHHHH-hcCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHH--HcCCCCEEEEeCCCCC
Confidence 4556666552 2233344577899999999988753 467999999999999999984 2345678888888886
Q ss_pred C
Q 011959 193 G 193 (474)
Q Consensus 193 g 193 (474)
|
T Consensus 153 ~ 153 (153)
T PLN02994 153 A 153 (153)
T ss_pred C
Confidence 5
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.5 Score=43.41 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=37.8
Q ss_pred CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011959 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (474)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (474)
|++.+++.+++.+++..+.|.... .-..+-.++-+++|..+|..|++.-|+..+|
T Consensus 142 dleav~~~iee~g~dcilci~stt---scfapr~pd~leaiaaica~~diphivnnay 196 (432)
T KOG3843|consen 142 DLEAVEAIIEELGEDCILCIHSTT---SCFAPRSPDNLEAIAAICAAHDIPHIVNNAY 196 (432)
T ss_pred hHHHHHHHHHHhCCceEEEEeecc---cccCCCCCchHHHHHHHHHccCchhhhcccc
Confidence 789999999876555322222211 1112334445999999999999999999998
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.43 E-value=36 Score=35.87 Aligned_cols=100 Identities=12% Similarity=0.299 Sum_probs=55.3
Q ss_pred eEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHH
Q 011959 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 236 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l 236 (474)
..-+..-|+.|-|+..... ...++++ ++.+...|..+...+.....+ .++ + +...|++..
T Consensus 182 NASLLDEgTAaaEAm~l~~-~~~krkk-~vvd~~~hpqtlsV~~TRa~~---------~~i------~---v~~~~~~~~ 241 (1001)
T KOG2040|consen 182 NASLLDEGTAAAEAMALCN-RINKRKK-FVVDSNCHPQTLSVVKTRAKG---------FGI------K---VVVSDIKEA 241 (1001)
T ss_pred chhhhccchhHHHHHHHHH-hhcccce-EEecCCCCcchhhhhhccccc---------cce------e---EEecCHHHh
Confidence 3334445666666554433 3445556 555677777665554332210 011 1 111133332
Q ss_pred HHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011959 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (474)
Q Consensus 237 e~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (474)
... .+++..+++--+ ...|.+.+ +.++.++++++|.++++
T Consensus 242 ~~s----~~~v~gvlvQYP-~t~G~i~d----~~el~~~a~~~~s~vv~ 281 (1001)
T KOG2040|consen 242 DYS----SKDVSGVLVQYP-DTEGSVLD----FDELVELAHANGSLVVM 281 (1001)
T ss_pred hcc----ccceeEEEEEcC-CCCCcccC----HHHHHHHhhccCceEEE
Confidence 221 236777777543 44678888 88899999999988774
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 474 | ||||
| 2gsa_A | 432 | Crystal Structure Of Glutamate-1-Semialdehyde Amino | 1e-179 | ||
| 2hoy_A | 432 | Inter-Subunit Signaling In Gsam Length = 432 | 1e-179 | ||
| 3fq7_A | 427 | Gabaculine Complex Of Gsam Length = 427 | 1e-179 | ||
| 3fqa_A | 427 | Gabaculien Complex Of Gabaculine Resistant Gsam Ver | 1e-178 | ||
| 3fq8_A | 427 | M248i Mutant Of Gsam Length = 427 | 1e-178 | ||
| 2cfb_A | 411 | Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm | 1e-175 | ||
| 3bs8_A | 438 | Crystal Structure Of Glutamate 1-Semialdehyde Amino | 1e-134 | ||
| 3k28_A | 429 | Crystal Structure Of A Glutamate-1-Semialdehyde Ami | 1e-121 | ||
| 2e7u_A | 424 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 1e-119 | ||
| 4e77_A | 429 | 2.0a Crystal Structure Of A Glutamate-1-Semialdehyd | 1e-119 | ||
| 3l44_A | 434 | Crystal Structure Of Bacillus Anthracis Heml-1, Glu | 1e-106 | ||
| 2epj_A | 434 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 9e-86 | ||
| 4ao9_A | 454 | Biochemical Properties And Crystal Structure Of A N | 2e-46 | ||
| 2yku_A | 465 | Structural Determinants Of The Beta-Selectivity Of | 5e-45 | ||
| 2cy8_A | 453 | Crystal Structure Of D-Phenylglycine Aminotransfera | 8e-43 | ||
| 1szs_A | 426 | The Structure Of Gamma-aminobutyrate Aminotransfera | 4e-32 | ||
| 1szk_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 5e-32 | ||
| 1sf2_A | 426 | Structure Of E. Coli Gamma-Aminobutyrate Aminotrans | 5e-32 | ||
| 1szu_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 2e-31 | ||
| 1vef_A | 395 | Acetylornithine Aminotransferase From Thermus Therm | 1e-30 | ||
| 2eh6_A | 375 | Crystal Structure Of Acetylornithine Aminotransfera | 2e-24 | ||
| 2pb0_A | 420 | Structure Of Biosynthetic N-Acetylornithine Aminotr | 6e-23 | ||
| 4adb_A | 406 | Structural And Functional Study Of Succinyl-ornithi | 2e-22 | ||
| 2ord_A | 397 | Crystal Structure Of Acetylornithine Aminotransfera | 2e-20 | ||
| 2e54_A | 385 | Crystal Structure Of Acetylornithine Aminotransfera | 2e-20 | ||
| 1oat_A | 439 | Ornithine Aminotransferase Length = 439 | 6e-20 | ||
| 2can_A | 402 | Human Ornithine Aminotransferase Complexed With L-C | 9e-20 | ||
| 3r4t_A | 467 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 2e-19 | ||
| 1m0n_A | 433 | Structure Of Dialkylglycine Decarboxylase Complexed | 2e-19 | ||
| 2byj_A | 439 | Ornithine Aminotransferase Mutant Y85i Length = 439 | 3e-19 | ||
| 1z3z_A | 431 | The Crystal Structure Of A Dgd Mutant: Q52a Length | 4e-19 | ||
| 2byl_A | 439 | Structure Of Ornithine Aminotransferase Triple Muta | 5e-19 | ||
| 1dgd_A | 432 | An Alkali Metal Ion Size-Dependent Switch In The Ac | 1e-18 | ||
| 1d7r_A | 433 | Crystal Structure Of The Complex Of 2,2-Dialkylglyc | 1e-18 | ||
| 3q8n_A | 453 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 4e-18 | ||
| 4atp_A | 456 | Structure Of Gaba-Transaminase A1r958 From Arthroba | 2e-17 | ||
| 4ffc_A | 453 | Crystal Structure Of A 4-Aminobutyrate Aminotransfe | 4e-17 | ||
| 2eo5_A | 419 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 2e-16 | ||
| 3oks_A | 451 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 1e-15 | ||
| 3nx3_A | 395 | Crystal Structure Of Acetylornithine Aminotransfera | 3e-15 | ||
| 1mgv_A | 429 | Crystal Structure Of The R391a Mutant Of 7,8-Diamin | 4e-15 | ||
| 3lg0_A | 422 | Structure Of Plasmodium Falciparum Ornithine Delta- | 4e-15 | ||
| 3ruy_A | 392 | Crystal Structure Of The Ornithine-Oxo Acid Transam | 5e-15 | ||
| 1z7d_A | 433 | Ornithine Aminotransferase Py00104 From Plasmodium | 8e-15 | ||
| 1s0a_A | 429 | Crystal Structure Of The Y17f Mutant Of 7,8- Diamin | 2e-14 | ||
| 1qj3_A | 429 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 2e-14 | ||
| 1dty_A | 429 | Crystal Structure Of Adenosylmethionine-8-Amino-7-O | 2e-14 | ||
| 3lv2_A | 462 | Crystal Structure Of Mycobacterium Tuberculosis 7,8 | 4e-14 | ||
| 1s08_A | 429 | Crystal Structure Of The D147n Mutant Of 7,8- Diami | 4e-14 | ||
| 3bv0_A | 437 | Crystal Structure Of Plp Bound 7,8-Diaminopelargoni | 4e-14 | ||
| 1s06_A | 429 | Crystal Structure Of The R253k Mutant Of 7,8- Diami | 5e-14 | ||
| 3tft_A | 457 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 5e-14 | ||
| 1s09_A | 429 | Crystal Structure Of The Y144f Mutant Of 7,8- Diami | 5e-14 | ||
| 1s07_A | 429 | Crystal Structure Of The R253a Mutant Of 7,8-Diamin | 7e-14 | ||
| 3dxw_A | 452 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 5e-12 | ||
| 2zuk_A | 439 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 5e-12 | ||
| 3a8u_X | 449 | Crystal Structure Of Omega-Amino Acid:pyruvate Amin | 6e-11 | ||
| 4a6r_A | 459 | Crystal Structure Of The Omega Transaminase From Ch | 4e-10 | ||
| 3du4_A | 448 | Crystal Structure Of 7-Keto-8-Aminopelargonic Acid | 9e-10 | ||
| 3dod_A | 448 | Crystal Structure Of Plp Bound 7,8-diaminopelargoni | 1e-09 | ||
| 3i4j_A | 430 | Crystal Structure Of Aminotransferase, Class Iii Fr | 1e-09 | ||
| 3n5m_A | 452 | Crystals Structure Of A Bacillus Anthracis Aminotra | 7e-09 | ||
| 3fcr_A | 459 | Crystal Structure Of Putative Aminotransferase (Yp_ | 3e-08 | ||
| 3gju_A | 459 | Crystal Structure Of A Putative Aminotransferase (M | 2e-07 | ||
| 2jjf_A | 449 | N328a Mutant Of M. Tuberculosis Rv3290c Length = 44 | 8e-07 | ||
| 2cin_A | 449 | Lysine Aminotransferase From M. Tuberculosis In The | 4e-06 | ||
| 2jjh_A | 449 | E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | 6e-06 | ||
| 2jje_A | 449 | Crystal Structure Of T330s Mutant Of Rv3290c From M | 8e-06 | ||
| 3hmu_A | 472 | Crystal Structure Of A Class Iii Aminotransferase F | 1e-05 | ||
| 3i5t_A | 476 | Crystal Structure Of Aminotransferase Prk07036 From | 2e-05 | ||
| 1ohv_A | 472 | 4-aminobutyrate-aminotransferase From Pig Length = | 1e-04 |
| >pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432 | Back alignment and structure |
|
| >pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432 | Back alignment and structure |
|
| >pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427 | Back alignment and structure |
|
| >pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411 | Back alignment and structure |
|
| >pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438 | Back alignment and structure |
|
| >pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429 | Back alignment and structure |
|
| >pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424 | Back alignment and structure |
|
| >pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429 | Back alignment and structure |
|
| >pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434 | Back alignment and structure |
|
| >pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434 | Back alignment and structure |
|
| >pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel Beta-phenylalanine Aminotransferase From Variovorax Paradoxus Length = 454 | Back alignment and structure |
|
| >pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A Bacterial Aminotransferase Length = 465 | Back alignment and structure |
|
| >pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase (D-Phgat) From Pseudomonas Strutzeri St-201 Length = 453 | Back alignment and structure |
|
| >pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426 | Back alignment and structure |
|
| >pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426 | Back alignment and structure |
|
| >pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426 | Back alignment and structure |
|
| >pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426 | Back alignment and structure |
|
| >pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395 | Back alignment and structure |
|
| >pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375 | Back alignment and structure |
|
| >pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420 | Back alignment and structure |
|
| >pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406 | Back alignment and structure |
|
| >pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397 | Back alignment and structure |
|
| >pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385 | Back alignment and structure |
|
| >pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439 | Back alignment and structure |
|
| >pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402 | Back alignment and structure |
|
| >pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467 | Back alignment and structure |
|
| >pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433 | Back alignment and structure |
|
| >pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439 | Back alignment and structure |
|
| >pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431 | Back alignment and structure |
|
| >pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439 | Back alignment and structure |
|
| >pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432 | Back alignment and structure |
|
| >pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433 | Back alignment and structure |
|
| >pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453 | Back alignment and structure |
|
| >pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456 | Back alignment and structure |
|
| >pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453 | Back alignment and structure |
|
| >pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419 | Back alignment and structure |
|
| >pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451 | Back alignment and structure |
|
| >pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395 | Back alignment and structure |
|
| >pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422 | Back alignment and structure |
|
| >pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392 | Back alignment and structure |
|
| >pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433 | Back alignment and structure |
|
| >pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429 | Back alignment and structure |
|
| >pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429 | Back alignment and structure |
|
| >pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462 | Back alignment and structure |
|
| >pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437 | Back alignment and structure |
|
| >pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457 | Back alignment and structure |
|
| >pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452 | Back alignment and structure |
|
| >pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439 | Back alignment and structure |
|
| >pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449 | Back alignment and structure |
|
| >pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459 | Back alignment and structure |
|
| >pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430 | Back alignment and structure |
|
| >pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452 | Back alignment and structure |
|
| >pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449 | Back alignment and structure |
|
| >pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449 | Back alignment and structure |
|
| >pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472 | Back alignment and structure |
|
| >pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476 | Back alignment and structure |
|
| >pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 474 | |||
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 0.0 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 0.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 0.0 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 0.0 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 0.0 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 0.0 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 0.0 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 0.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 2e-67 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 1e-66 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 2e-66 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 3e-66 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 4e-64 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 7e-59 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 6e-57 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 9e-54 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 4e-53 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 8e-53 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 6e-52 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 2e-51 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 2e-51 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 3e-51 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 5e-48 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 4e-47 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 3e-44 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 6e-42 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 3e-41 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 3e-39 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 9e-39 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 9e-39 | |
| 3nui_A | 478 | Pyruvate transaminase; amino transferase, transfer | 5e-38 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 1e-37 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 3e-37 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 2e-36 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 2e-34 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 3e-34 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-05 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 7e-07 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 7e-07 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 7e-07 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 9e-07 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 1e-06 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 7e-06 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 4e-05 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 7e-04 |
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427 | Back alignment and structure |
|---|
Score = 812 bits (2099), Expect = 0.0
Identities = 306/427 (71%), Positives = 359/427 (84%)
Query: 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGS 107
F KS+E F A++LMPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+
Sbjct: 1 FKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGT 60
Query: 108 WGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEA 167
WGPAI GHA +V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEA
Sbjct: 61 WGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEA 120
Query: 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT 227
CM VLR+ RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT
Sbjct: 121 CMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLT 180
Query: 228 APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
P+ND+ A++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDE
Sbjct: 181 TPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 240
Query: 288 VMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 347
V+TGFR+AYGG QE FGVTPDLTTLGKIIGGGLPVGAYGG+R+IM++VAPAGPMYQAGTL
Sbjct: 241 VITGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTL 300
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407
SGNPLAMTAGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFF
Sbjct: 301 SGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFF 360
Query: 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 467
FTEGPV+N+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA
Sbjct: 361 FTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAA 420
Query: 468 EKVLRQI 474
V+ +
Sbjct: 421 RTVMSAL 427
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429 | Back alignment and structure |
|---|
Score = 807 bits (2088), Expect = 0.0
Identities = 226/429 (52%), Positives = 297/429 (69%), Gaps = 1/429 (0%)
Query: 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVG 106
+ + KSE + A++L+PGGVNSPVRAF VGG P+ + G++++D+DG YIDYVG
Sbjct: 1 SNAMSKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVG 60
Query: 107 SWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTE 166
SWGP I+GH + A+ E +++G SFGAP +E +A++V VP+++MVR VNSGTE
Sbjct: 61 SWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTE 120
Query: 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETL 226
A M +RLAR +TGR++IIKFEGCYHGHAD LVKAGSG TLG P+SPGVP TL
Sbjct: 121 ATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTL 180
Query: 227 TAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286
T +ND++++ FE E+A II+EPV GN I P P+FL +R + E GALLI D
Sbjct: 181 TCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIID 240
Query: 287 EVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGT 346
EVMTGFR+A GAQ+Y+ V PDLT LGKIIGGG+PVGA+GGRR++M +AP GP+YQAGT
Sbjct: 241 EVMTGFRVALAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGT 300
Query: 347 LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406
LSGNP+AM AG L + + G YE L ++T L G+ A K+ + ++ GMFG
Sbjct: 301 LSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGL 360
Query: 407 FFTEG-PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTIT 465
FFT V ++D + +F RF+ MLEEGVY APS FEAGF SLAHS++DIQ T+
Sbjct: 361 FFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFEAGFMSLAHSNEDIQKTVN 420
Query: 466 AAEKVLRQI 474
AA + ++
Sbjct: 421 AARRCFAKL 429
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434 | Back alignment and structure |
|---|
Score = 805 bits (2083), Expect = 0.0
Identities = 201/426 (47%), Positives = 285/426 (66%), Gaps = 1/426 (0%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYVGSW 108
KSE A E + GGVNSP R+FK+VGG PI + KG++ WD+DGN+YIDY+ ++
Sbjct: 5 FTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAY 64
Query: 109 GPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168
GP I GHA + A+ + G +G P LE A+M+ A+P+++ VRFVNSGTEA
Sbjct: 65 GPIITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAV 124
Query: 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 228
M +R+ARA+TGR +I+KF GCYHGH+D LV AGSG +TLG PDS GVP+ E +T
Sbjct: 125 MTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITV 184
Query: 229 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288
PFN+V L+ + E+AAI++EP+VGN G + PKP FL + + E GAL+I+DEV
Sbjct: 185 PFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEV 244
Query: 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348
+T FR YGGAQ+ GVTPDLT LGK+IGGGLP+GAYGG+++IME VAP GP YQAGT++
Sbjct: 245 ITAFRFMYGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMA 304
Query: 349 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408
GNP +M +GI L+ L++ G YE L+++ L +GI++ K I + G +F
Sbjct: 305 GNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYF 364
Query: 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
T + +++ A+ ++ F +F++ ML+EGV APS++EA F + H+ +DI++TI A
Sbjct: 365 TTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFLTTEHTKEDIEYTIEAVG 424
Query: 469 KVLRQI 474
+ +
Sbjct: 425 RAFAAL 430
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429 | Back alignment and structure |
|---|
Score = 803 bits (2077), Expect = 0.0
Identities = 244/426 (57%), Positives = 302/426 (70%), Gaps = 1/426 (0%)
Query: 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSW 108
KS AF A++LMPGGVNSPVRAFKSVG P+ + KGS ++DIDGNEYIDYV SW
Sbjct: 3 KFDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSW 62
Query: 109 GPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168
GP I GHA+D+V+ AL ++GTSFGAP +EN LA++VI VPSIE+VR VNSGTEA
Sbjct: 63 GPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEAT 122
Query: 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 228
M LRLAR +TGR +I+KF GCYHGH D L+KAGSGVATLGLPDSPGVP+G T+T
Sbjct: 123 MSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITV 182
Query: 229 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288
+ND+ +++ FE +IA +I+EPV GN G + P+P FL +R +T++NGALLIFDEV
Sbjct: 183 AYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEV 242
Query: 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348
MTGFR+AY Q Y+GVTPDLT LGK+IGGGLPVGAYGG+ +IM VAP+GP+YQAGTLS
Sbjct: 243 MTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLS 302
Query: 349 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408
GNPLAM AG TL +L P +Y + L G+ A +K G M G FF
Sbjct: 303 GNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFF 361
Query: 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
T+ PV N++ AK S FA +YR M+E+GV+ PSQFE F S HS DI+ TI AAE
Sbjct: 362 TDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAE 421
Query: 469 KVLRQI 474
+ ++
Sbjct: 422 IAMSKL 427
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434 | Back alignment and structure |
|---|
Score = 790 bits (2043), Expect = 0.0
Identities = 176/426 (41%), Positives = 251/426 (58%), Gaps = 2/426 (0%)
Query: 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSW 108
+ +KS F KEL PGGVNSPVRA +V P +G++++ +DG +D V ++
Sbjct: 8 SGEKSRMLFERTKELFPGGVNSPVRA--AVKPYPFYVKRGEGAYLYTVDGARIVDLVLAY 65
Query: 109 GPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168
GP I+GH +VL A+ E + +G +GAP E +LAE ++ V M+RFVNSGTEA
Sbjct: 66 GPLILGHKHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEAT 125
Query: 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 228
M +RLAR +TGR+ I+KF+GCYHG D LV AGS A G+P S GVP+ TL
Sbjct: 126 MTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVT 185
Query: 229 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288
P+NDV ALE +F IA +I+EPV+ N+G I P+ +FL A++R+++E+GALLI DEV
Sbjct: 186 PYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEV 245
Query: 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348
+TGFRL GAQ YF + D+ LGKIIGGG PVGA G R++M ++ P G ++ AGT +
Sbjct: 246 VTGFRLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFN 305
Query: 349 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408
+P+ M AG+ TLK L+E Y + L + + + G + M F
Sbjct: 306 AHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFI 365
Query: 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
V N A+K++ + + + ML GV+ APS EA FT L H + ++ +
Sbjct: 366 GVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLEAVFTGLPHQGEALEIAVEGLR 425
Query: 469 KVLRQI 474
L+ +
Sbjct: 426 SSLKTV 431
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424 | Back alignment and structure |
|---|
Score = 787 bits (2036), Expect = 0.0
Identities = 228/422 (54%), Positives = 286/422 (67%), Gaps = 2/422 (0%)
Query: 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGP 110
SE F AK +PGGV+SPVRAFK+VGG P +G+++WD DGN Y+DYV SWGP
Sbjct: 4 PISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGP 63
Query: 111 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 170
I+GHA +VLA + ET+++G +FGAP LE LA+ V A P +++VRFVNSGTEA M
Sbjct: 64 LILGHAHPKVLARVRETLERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMS 123
Query: 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230
LRLAR +TGR I+KF G YHGHAD LV+AGSG TLG+P S GVP+ TL +
Sbjct: 124 ALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY 183
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
ND L + + EIAAII EPVVGN+G + P DFL A+ K G LLI DEVMT
Sbjct: 184 NDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMT 242
Query: 291 GFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350
GFRLA+GGA E G+ PDL TLGKI+GGGLP AY GRR+IME VAP GP+YQAGTLSGN
Sbjct: 243 GFRLAFGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGN 302
Query: 351 PLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
PLAM AG+ TL+ L+E PG Y YL + L G+ + K+ G + M FFT
Sbjct: 303 PLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFT 362
Query: 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 469
EGPV F+DA++++T F RF+ G+L+ G+Y+ PS FEA F S+AH +D++ T+ A K
Sbjct: 363 EGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNFEAAFLSVAHREEDVEKTLEALRK 422
Query: 470 VL 471
L
Sbjct: 423 AL 424
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453 | Back alignment and structure |
|---|
Score = 740 bits (1912), Expect = 0.0
Identities = 136/446 (30%), Positives = 206/446 (46%), Gaps = 19/446 (4%)
Query: 37 MSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDI 96
MS+ + +RK + S A+ +MP GV + RAF + +G H D+
Sbjct: 1 MSILNDYKRKT---EGSVFWAQRARSVMPDGVTADTRAFDPH---GLFISDAQGVHKTDV 54
Query: 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIE 156
DGN Y+D+ G G ++GH +V AA+ E + G + A LE AE +++A PSI
Sbjct: 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQYAASHPLEVRWAERIVAAFPSIR 114
Query: 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216
+RF SGTE + LR+ARAFTGR I++FEG YHG D +G G P +PG
Sbjct: 115 KLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHD--FSASGYNSHFDGQP-APG 171
Query: 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276
V T TL +D+ + +F N+ +IAA I EPV + G FL +
Sbjct: 172 VLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELA 231
Query: 277 KENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA 336
++ GAL I DEV++GFR+ G Q V PDLT L K GGLP G GGR D+M +++
Sbjct: 232 RQYGALFILDEVISGFRVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLS 291
Query: 337 PAG--PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA 394
+ GT +GNP+ A I + + E +N + + + + G
Sbjct: 292 RGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLN 351
Query: 395 ICGGYISGMFGFF------FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 448
F T+ + + + A ++ EGV +
Sbjct: 352 WLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGRG--S 409
Query: 449 GFTSLAHSSDDIQHTITAAEKVLRQI 474
F S H + ++H +T ++VL ++
Sbjct: 410 VFLSAQHEREHVEHLVTTFDRVLDRL 435
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465 | Back alignment and structure |
|---|
Score = 723 bits (1868), Expect = 0.0
Identities = 134/452 (29%), Positives = 206/452 (45%), Gaps = 22/452 (4%)
Query: 25 SSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIV 84
S S +++ S A+ MPGG + + P+V
Sbjct: 29 GRSPASDTAEKAQAIAAARNTFARDNPVSAGHHERARRSMPGGNTRSILFHRPF---PLV 85
Query: 85 FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVL 144
GS D+DG+ Y++++G + + GH+ + AA+ + G + E +
Sbjct: 86 IAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQTENEALF 145
Query: 145 AEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS 204
AE V PSI++VRF NSGTEA + L A A TGR+ ++ F+G YHG L+ S
Sbjct: 146 AEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGG----LLNFAS 201
Query: 205 GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 264
G P A Y + +NDV +L + + + AAI++EP++G G +
Sbjct: 202 G----------HAPTNAPYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPA 251
Query: 265 KPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGA 324
+ FL+ +R GALLIFDEVMT RL+ GGAQE G++ DLTTLGK IGGG+ GA
Sbjct: 252 ERAFLDLLRAEASRCGALLIFDEVMTS-RLSGGGAQEMLGISADLTTLGKYIGGGMSFGA 310
Query: 325 YGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382
+GGRRD+ME PA G AGT + N L M+AG L ++ L+
Sbjct: 311 FGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRA 370
Query: 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 442
+ + + + + F+ P+ + D + ++ F+ ML +G+Y A
Sbjct: 371 NLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLA 430
Query: 443 PSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
P A +A + A + +
Sbjct: 431 PRGMYALSLEIADA--GRDAFAEALADFIGEQ 460
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426 | Back alignment and structure |
|---|
Score = 220 bits (564), Expect = 2e-67
Identities = 102/345 (29%), Positives = 154/345 (44%), Gaps = 56/345 (16%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
++E + +P GV PI D + +WD++G EY+D+ G
Sbjct: 3 SNKELMQRRSQAIPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIAVL 53
Query: 112 IIGHADDQVLAALGETMKK-----GTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSG 164
GH +V+AA+ +KK LE L E++ VP + V +G
Sbjct: 54 NTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLE--LCEIMNQKVPGDFAKKTLLVTTG 111
Query: 165 TEACMGVLRLARAFTGRERIIKFEGCYHG----------HADPFLVKAGSGVATLGLPDS 214
+EA +++ARA T R I F G YHG +P+ AG G
Sbjct: 112 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPY--SAGMG------LMP 163
Query: 215 PGV---PKGATYETLTAPFNDVSALENLFENNKG--EIAAIILEPVVGNSGFIAPKPDFL 269
V ++ + ++++ +F+N+ +IAAI++EPV G GF A P F+
Sbjct: 164 GHVYRALYPCPLHGIS-EDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFM 222
Query: 270 NAIRRITKENGALLIFDEVMTGFRLAYGG------AQEYFGVTPDLTTLGKIIGGGLPVG 323
+R + E+G +LI DEV +G G A E GV PDLTT K I GG P+
Sbjct: 223 QRLRALCDEHGIMLIADEVQSGA-----GRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLA 277
Query: 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
GR ++M+ VAP G GT +GNP+A A + LK ++
Sbjct: 278 GVTGRAEVMDAVAPGG---LGGTYAGNPIACVAALEVLKVFEQEN 319
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 1e-66
Identities = 87/372 (23%), Positives = 143/372 (38%), Gaps = 69/372 (18%)
Query: 37 MSVSVEEQRKNFTL---KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHM 93
M E+ R T +S+ + + GV + + P+ G +
Sbjct: 5 MVSHPEQSRHLATAIPGPRSQALIDRKGTAVARGVGTTM---------PVYAVRAGGGIV 55
Query: 94 WDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFGAPCLLENVLAEMV 148
D+DGN ID +G++ +V+ A+ + + + E +
Sbjct: 56 EDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVA--VCEQL 113
Query: 149 ISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG----------HAD 196
P + NSG+EA +++AR+ T + ++ F+ YHG
Sbjct: 114 NRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVM 173
Query: 197 PFLVKAGSGVATLGLPDSPGV------------PKGATYETLTAPFNDVSALENLFENNK 244
P+ K G G P +P + G T + +
Sbjct: 174 PY--KDGFG------PFAPEIYRAPLSYPFRDAEFGKELATDGE--LAAKRAITVIDKQI 223
Query: 245 G--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG---- 298
G +AA+++EP+ G GFI P FL + ++N + I DEV TGF
Sbjct: 224 GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGF-----ARTGA 278
Query: 299 --AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 356
A E+ G+ PDL K I GGLP+ A GR +IM+ +G GT GNP+A A
Sbjct: 279 MFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSG---LGGTYGGNPIACAA 335
Query: 357 GIHTLKRLKEPG 368
+ T++ ++ G
Sbjct: 336 ALATIETIESEG 347
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 2e-66
Identities = 75/315 (23%), Positives = 128/315 (40%), Gaps = 43/315 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P++ + KGS ++D DG +D+ A++GH ++++ +GE K + L
Sbjct: 26 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 85
Query: 142 NV--LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG----- 193
V LA + + P ++ +++G E+ +R+A+ TG+ I+ F +HG
Sbjct: 86 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAA 145
Query: 194 ----------HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243
P G + P + + ++ L+ F+
Sbjct: 146 ASATYSAGRKGVGPAA----VGSFAIPAPFTYRPRFERNGAY-----DYLAELDYAFDLI 196
Query: 244 K----GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG- 298
G +AA I EP++ + G I ++ A++R + G LLI DE TG G
Sbjct: 197 DRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGV-----GR 251
Query: 299 -----AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353
A + GVTPD+ TL K +G GLP+ A I E T +PL
Sbjct: 252 TGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHE-LGYLFYTTHVSDPLP 310
Query: 354 MTAGIHTLKRLKEPG 368
G+ L ++ G
Sbjct: 311 AAVGLRVLDVVQRDG 325
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 3e-66
Identities = 86/315 (27%), Positives = 127/315 (40%), Gaps = 44/315 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFGA 136
P+ G + D DGN +ID +G + V AA+ +
Sbjct: 47 PVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPY 106
Query: 137 PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194
++ +AE++ + P + NSG EA +++AR TGR ++ F+ YHG
Sbjct: 107 EQYVQ--VAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGR 164
Query: 195 --------ADPFLVKAG-----SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 241
A K+ V + G T E + E
Sbjct: 165 TNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEA------ARRAISRIE 218
Query: 242 NNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG- 298
G +AAII+EP+ G GFI P P FL + ENG + I DEV TGF
Sbjct: 219 TQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGF-----AR 273
Query: 299 -----AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353
A E+ G+ PD+ T+ K I GG+P+ A GR ++M+ V G GT GNP+
Sbjct: 274 TGAWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAGG---LGGTYGGNPVT 330
Query: 354 MTAGIHTLKRLKEPG 368
A + L ++E
Sbjct: 331 CAAAVAALGVMRELD 345
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439 | Back alignment and structure |
|---|
Score = 212 bits (543), Expect = 4e-64
Identities = 77/317 (24%), Positives = 124/317 (39%), Gaps = 52/317 (16%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-----SFGA 136
P+ +G+ + + +G E ID G+WG A +G+ ++AA+ S
Sbjct: 26 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85
Query: 137 PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194
+ LAE ++++ P + F +SG++A R TGR +I F G YHG
Sbjct: 86 APAVT--LAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHG- 142
Query: 195 ADPFLVKAGSGVATLGL---------PDSPGV---PKGATYETLTAPFNDVSALENLFEN 242
V ++ + G+ P Y A+ L
Sbjct: 143 ---------CTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRND-PTGDAILTLLTE 192
Query: 243 NK-----GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 297
G I A +EP+ + G I P FL I + +G L++ DEV G
Sbjct: 193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGL----- 247
Query: 298 G------AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
E+ G PD+ LGK +GGGLP+ A +I++ + TL GNP
Sbjct: 248 ARSGRLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAF----AMQTLHGNP 303
Query: 352 LAMTAGIHTLKRLKEPG 368
++ AG+ L+ +
Sbjct: 304 ISAAAGLAVLETIDRDD 320
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 7e-59
Identities = 98/323 (30%), Positives = 150/323 (46%), Gaps = 35/323 (10%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 136
++ +G+ +WD +GNEYID VG +G A +GH + +V+ A+ +
Sbjct: 27 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPT 86
Query: 137 PCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 195
P E + + +P + V VNSGTEA L+ ARA TGR++ + + G
Sbjct: 87 PMRGE--FYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRT 144
Query: 196 DPFLVKAGSGVATLGLPDSPGV-------PKGATYETLTAPFNDVSALENLFENNKGEIA 248
+ +L + P + + P+NDV AL+ + A
Sbjct: 145 ----------MGSLSVTWEPKYREPFLPLVEPVEF----IPYNDVEALKRAVDEE---TA 187
Query: 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP 307
A+ILEPV G G P+FL A R IT+E GALLI DE+ TG R A E+FG+ P
Sbjct: 188 AVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVP 247
Query: 308 DLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367
D+ TL K +GGG+P+G R ++ + G T GNPLAM AG+ ++ L+
Sbjct: 248 DILTLAKALGGGVPLGVAVMREEVARSMPKGG---HGTTFGGNPLAMAAGVAAIRYLERT 304
Query: 368 GTYEYLNKITGELTQGIIDAGKK 390
+E ++ + +
Sbjct: 305 RLWERAAELGPWFMEKLRAIPSP 327
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 6e-57
Identities = 86/340 (25%), Positives = 146/340 (42%), Gaps = 46/340 (13%)
Query: 60 AKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADD 118
+++++ + + P+V D +G ++D+DGN+Y+D+ G +G +
Sbjct: 3 SRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHP 62
Query: 119 QVLAALGETMKK-----GTSFGAPCLLENVLAEMVISAVPSIEMVR--FVNSGTEACMGV 171
+V+ E M+K F LE LA+ +++ P + F NSGTEA
Sbjct: 63 EVIKIGIEQMQKLAHAAANDFYNIPQLE--LAKKLVTYSPGNFQKKVFFSNSGTEAIEAS 120
Query: 172 LRLARAFTGRERIIKFEGCYHGH--------ADPFLVKAG-----SGVATLGLPDSPGVP 218
+++ + TGR+ II F G +HG A + ++ GV + P+ P
Sbjct: 121 IKVVKN-TGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNP 179
Query: 219 KGATY-----ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 273
E + + + E+A I EP+ G G++ P +F ++
Sbjct: 180 WHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQ 239
Query: 274 RITKENGALLIFDEVMTGFRLAYGG------AQEYFGVTPDLTTLGKIIGGG-LPVGAYG 326
++ K+ G LL+ DEV G G A E F PD+ TL K +GGG +P+GA
Sbjct: 240 KLAKKYGILLVDDEVQMGL-----GRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATI 294
Query: 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
R+D+ P + T GN LA G + +K+
Sbjct: 295 FRKDLDF-----KPGMHSNTFGGNALACAIGSKVIDIVKD 329
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 9e-54
Identities = 84/336 (25%), Positives = 139/336 (41%), Gaps = 56/336 (16%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 137
PIV +G + D +GN Y+D + ++ GH +++ AL + + T +F +
Sbjct: 19 PIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSD 78
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEG 189
L E ++ + + EMV +N+G EA ++ AR + R II E
Sbjct: 79 QLGP--WYEK-VAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCED 135
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNK 244
+HG + + + + +G + + P+ D+ AL+ N
Sbjct: 136 NFHGRT----------MGAVSMSSNEEYKRG--FGPMLPGIIVIPYGDLEALKAAITPN- 182
Query: 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGGA 299
AA ILEP+ G +G P FL + K+ L + DE+ TG A
Sbjct: 183 --TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFAC--- 237
Query: 300 QEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAM 354
++ VTPD+ LGK +GGG+ P+ RDI+ + P G T GNPLA
Sbjct: 238 -DWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEP-------GSHGSTFGGNPLAC 289
Query: 355 TAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390
I L+ L+E E ++ +L + +
Sbjct: 290 AVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNP 325
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 4e-53
Identities = 84/315 (26%), Positives = 135/315 (42%), Gaps = 55/315 (17%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGA 136
P+ + KG ++WD++G +Y D++ S+ GH +++ AL + K T +F
Sbjct: 58 LPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYN 117
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFE 188
L E E I+ + + V +N+G EA +LAR + + +I+
Sbjct: 118 NVLGE--YEEY-ITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAA 174
Query: 189 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENN 243
G + G ++ + P G + P+ND+ ALE ++
Sbjct: 175 GNFWGRT----------LSAISSSTDPTSYDG--FGPFMPGFDIIPYNDLPALERALQDP 222
Query: 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGG 298
+AA ++EP+ G +G + P P +L +R + + L I DE+ TG LA
Sbjct: 223 N--VAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAV-- 278
Query: 299 AQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLA 353
+Y V PD+ LGK + GGL PV A DIM + P G T GNPL
Sbjct: 279 --DYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP-------GEHGSTYGGNPLG 329
Query: 354 MTAGIHTLKRLKEPG 368
I L+ L+E
Sbjct: 330 CRVAIAALEVLEEEN 344
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 8e-53
Identities = 70/314 (22%), Positives = 122/314 (38%), Gaps = 55/314 (17%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 137
P+V KG ++D++ Y D++ ++ GH +L A+ K T +F +
Sbjct: 48 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 107
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEG 189
L ++ + + V +N+G EA +L R + +I+ +
Sbjct: 108 PLGI--CERY-LTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKN 164
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNK 244
+ G + + + + P++D+ ALE ++
Sbjct: 165 NFSGRT----------LGCISASTTKKCTSN--FGPFAPQFSKVPYDDLEALEEELKDP- 211
Query: 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGGA 299
+ A I+EP+ G +G I P ++L + I K+ L + DEV TG L
Sbjct: 212 -NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCV--- 267
Query: 300 QEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAM 354
++ V PD+ LGK + GG P+ A DIM ++ P G T GNPLA
Sbjct: 268 -HHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP-------GEHGSTYGGNPLAA 319
Query: 355 TAGIHTLKRLKEPG 368
+ + L L
Sbjct: 320 SICVEALNVLINEK 333
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 178 bits (455), Expect = 6e-52
Identities = 91/309 (29%), Positives = 138/309 (44%), Gaps = 51/309 (16%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 136
P+ F KG +++D +G EY+D+V G +GHA ++ AL E ++K S +
Sbjct: 10 LPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYEN 69
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCY 191
P E LA ++ + V F NSGTE+ ++LAR + + + I FE +
Sbjct: 70 PWQEE--LAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSF 127
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 246
HG +L P KG +E L A ND+ ++ L +
Sbjct: 128 HGRT----------YGSLSATGQPKFHKG--FEPLVPGFSYAKLNDIDSVYKLLDEE--- 172
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R----LAYGGAQE 301
A II+E + G G DFL+ ++ I KE LLI DEV TG R AY +
Sbjct: 173 TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAY----Q 228
Query: 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAG 357
+F + PD+ L K +GGG+P+GA + + G T GNPLA AG
Sbjct: 229 HFNLKPDVIALAKGLGGGVPIGA-------ILAREEVAQSFTPGSHGSTFGGNPLACRAG 281
Query: 358 IHTLKRLKE 366
+ +++
Sbjct: 282 TVVVDEVEK 290
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 2e-51
Identities = 90/332 (27%), Positives = 146/332 (43%), Gaps = 45/332 (13%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 136
P F KGS ++D GN Y+D+ ++GH+ +++ A+ + +K S F
Sbjct: 22 FPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWN 81
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCY 191
+E LAE++ V F N+GTEA +++AR + + RI+ +
Sbjct: 82 RPQME--LAELLSKNTFG-GKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSF 138
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 246
HG + +L P K +E L FN+V L +
Sbjct: 139 HGRT----------LGSLTATGQPKYQKP--FEPLVPGFEYFEFNNVEDLRRKMSED--- 183
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 305
+ A+ LEP+ G SG + +FL R++ E ALL+FDEV G R A + +GV
Sbjct: 184 VCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGV 243
Query: 306 TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAGIHTL 361
PD+ T K +GGG+P+GA +V + + G T GNPLA AG+ +
Sbjct: 244 VPDVLTTAKGLGGGVPIGAV--------IVNERANVLEPGDHGTTFGGNPLACRAGVTVI 295
Query: 362 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGH 393
K L + G E + + L + + + ++
Sbjct: 296 KELTKEGFLEEVEEKGNYLMKKLQEMKEEYDV 327
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 2e-51
Identities = 88/333 (26%), Positives = 138/333 (41%), Gaps = 51/333 (15%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 136
IV + +G +++D +Y+D+ G +G+ + A + + K TS +
Sbjct: 18 FDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYN 77
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCY 191
+ A+ + A E V F NSGTE+ G ++ AR + + I F+ +
Sbjct: 78 ENIAA--AAKNLAKASAL-ERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSF 134
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 246
HG + L L + K ++ L A +ND+S++E L
Sbjct: 135 HGRT----------LGALSLTANEKYQKP--FKPLISGVKFAKYNDISSVEKLVNEK--- 179
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R----LAYGGAQE 301
AIILE V G G DF A+R++ E LLI DE+ G R AY E
Sbjct: 180 TCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAY----E 235
Query: 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAG 357
+ + PD+ T K +G GL VGA+ + + A +AG T GNPL
Sbjct: 236 HAQILPDIMTSAKALGCGLSVGAFVINQKV------ASNSLEAGDHGSTYGGNPLVCAGV 289
Query: 358 IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390
+ KE E +NK+T L Q + + +
Sbjct: 290 NAVFEIFKEEKILENVNKLTPYLEQSLDELINE 322
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 3e-51
Identities = 92/326 (28%), Positives = 138/326 (42%), Gaps = 53/326 (16%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGAP 137
+ KGS +WD G EYID+ G +GH ++ AL + TS F
Sbjct: 40 DFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNE 99
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCY 191
L L +I A + E V F+NSGTEA +LAR + + +II F +
Sbjct: 100 PALR--LGRKLIDATFA-ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAF 156
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 246
HG + + T+ + P G + PFND+ A++ + +++
Sbjct: 157 HGRS----------LFTVSVGGQPKYSDG--FGPKPADIIHVPFNDLHAVKAVMDDH--- 201
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R----LAYGGAQE 301
A+++EP+ G G A P+FL +R + E+ ALL+FDEV G R AY
Sbjct: 202 TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAY----M 257
Query: 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAG 357
++GVTPD+ T K +GGG PV A M + G T GNPLA
Sbjct: 258 HYGVTPDILTSAKALGGGFPVSA-------MLTTQEIASAFHVGSHGSTYGGNPLACAVA 310
Query: 358 IHTLKRLKEPGTYEYLNKITGELTQG 383
+ P + ++ + Q
Sbjct: 311 GAAFDIINTPEVLQGIHTKRQQFVQH 336
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 5e-48
Identities = 70/356 (19%), Positives = 112/356 (31%), Gaps = 54/356 (15%)
Query: 59 VAKELMPGGVNSPVRAFKSVG--------GQPIVFDSVKGSHMWD-IDGNEYIDYVGSWG 109
V + G +P R + +G + GS++ D I G Y+D
Sbjct: 5 VKSVALAGRPTTPDRVHEVLGRSMLVDGLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVA 64
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENV-------LAEMVISAVPSIEMVR--F 160
+ +G ++ + + +V E + + F
Sbjct: 65 SSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFF 124
Query: 161 VNSGTEACMGVLRLARAFTGRE------------RIIKFEGCYHG---------HADPFL 199
V G A L+ A + R +++ G +HG + P +
Sbjct: 125 VEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTI 184
Query: 200 VKAGSGVATLGLPDSPGVPKGATYETLT-APFNDVSALENLFENNKGEIAAIILEPVVGN 258
A D+P + G + + FE +IA + EP+ G
Sbjct: 185 -TARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGE 243
Query: 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF----RL-AYGGAQEYFGVTPDLTTLG 313
G +P+F A+R + E ALLIFDEV TG AY + V PD+ G
Sbjct: 244 GGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAY----QQLDVAPDIVAFG 299
Query: 314 K-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
K G+ G A P T GN M L+ ++ G
Sbjct: 300 KKTQVCGVMAGRRVDEVADN---VFAVPSRLNSTWGGNLTDMVRARRILEVIEAEG 352
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 4e-47
Identities = 58/344 (16%), Positives = 107/344 (31%), Gaps = 71/344 (20%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL-- 139
++ +G+++ D+DGN +D IG++ ++ + + T P L
Sbjct: 46 FCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI 105
Query: 140 -----LENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRER---------- 183
L E ++S P + + + G+ + + + +
Sbjct: 106 LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEE 165
Query: 184 ----------------IIKFEGCYHG---------HADPFLVKAGSGVATLGLPDSPGVP 218
I+ F G +HG H+ K + P +
Sbjct: 166 LETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAI-HKIDIPSFDWPIAPFPRLK 224
Query: 219 KGATYETLTAPFNDVSALENL------FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272
+ LE + + K +A II+EP+ G DF +
Sbjct: 225 YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKL 284
Query: 273 RRITKENGALLIFDEVMTGFRLAYGG------AQEYFGVT--PDLTTLGKIIGGGLPVGA 324
R I++++G + DEV TG G A E++G+ D+ T K + G
Sbjct: 285 RDISRKHGCAFLVDEVQTGG-----GSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHK 339
Query: 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
E P P T G+P + +K
Sbjct: 340 --------EEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKRED 375
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 3e-44
Identities = 79/359 (22%), Positives = 137/359 (38%), Gaps = 44/359 (12%)
Query: 71 PVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130
+R F V +G + DI G Y+D + G+ ++ A + ++
Sbjct: 23 GMRPFSPNS--TTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQT 80
Query: 131 ----GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TG 180
S ++ LAE + + ++ F NSG+EA ++AR +
Sbjct: 81 LSYFPMSQSHEPAIK--LAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPH 138
Query: 181 RERIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKGATYE 224
R + + YHG +PF SG + PD +P
Sbjct: 139 RYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFA----SGFLHVTPPDCYRMPGIEREN 194
Query: 225 TLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL 283
V ++ + E IAA I+EP++ G + D++ A+ +++GALL
Sbjct: 195 IYDVEC--VKEVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALL 252
Query: 284 IFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGP- 340
I DEV+ GF R + V PD+ T+ K I LP+ A +R+I E G
Sbjct: 253 ISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEY 312
Query: 341 -MYQAG-TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 397
++ T GNP A + L+ ++ E ++ L + + + H + G
Sbjct: 313 EFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEE--IGEHPLVG 369
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 6e-42
Identities = 93/450 (20%), Positives = 156/450 (34%), Gaps = 90/450 (20%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P++ +S G + DI+G EY D S + GH ++ A+ + + K +
Sbjct: 27 PLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGK---------IA 77
Query: 142 NV------------LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRE 182
+ LAE +I P + V + +SG EA L++A + ++
Sbjct: 78 HSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQ 137
Query: 183 RIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKGATYETL 226
+ I + YHG H P + +P G E
Sbjct: 138 KFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLM----FESYKAPIPYVYRSESGDPDECR 193
Query: 227 TAPFNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIF 285
+ L L E + EIAA+ +E +V G SG I +L +R + L+I
Sbjct: 194 DQ---CLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIV 250
Query: 286 DEVMTGF-RLAYGG---AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGP 340
DEV TGF R G A E+ V PDL GK I GG LP+ DI + A
Sbjct: 251 DEVATGFGRT---GKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYK--AFYDD 305
Query: 341 MYQAGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA 394
T +GN L + L + E + + + +L + D
Sbjct: 306 YENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDL---HALP 362
Query: 395 ICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV---------YFAPS 444
G G ++ ++ + M E G+ F P
Sbjct: 363 HVGDIRQLGFMCGAELVRSK-ETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLP- 420
Query: 445 QFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
LA +++++ + ++ + ++
Sbjct: 421 -------PLASTAEELSEMVAIMKQAIHEV 443
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 3e-41
Identities = 81/324 (25%), Positives = 126/324 (38%), Gaps = 51/324 (15%)
Query: 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMKK-----GT 132
V +G ++D G Y+D GS G + IGH +V + + G+
Sbjct: 10 KPYPVAVRGEGVFLYDDAGRRYLD--GSSGALVANIGHGRAEVGERMAAQAARLPFVHGS 67
Query: 133 SFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF------TGRERII 185
F + L E A + V V+ G+EA ++LAR + GR ++I
Sbjct: 68 QFSSDVLEE--YAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVI 125
Query: 186 KFEGCYHGHADPFLVKAGSGVATLGL---------------PDSPGVPKGATYETLTAPF 230
YHG + + +L P++ A
Sbjct: 126 TRVPSYHG----------ASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGA-- 173
Query: 231 NDVSALENLFENNKGE-IAAIILEPVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEV 288
D L L E E +AA + EPVVG S +AP P + +R I E G + I DEV
Sbjct: 174 EDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEV 233
Query: 289 MTGF-RL-AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAG 345
M+G R + + GVTPD+ LGK + G P+ + E V + G
Sbjct: 234 MSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHG 293
Query: 346 -TLSGNPLAMTAGIHTLKRLKEPG 368
T +G+P+++ AG+ L ++
Sbjct: 294 FTYAGHPVSVAAGLSVLDIVERED 317
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 3e-39
Identities = 77/369 (20%), Positives = 132/369 (35%), Gaps = 55/369 (14%)
Query: 70 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129
+ + + +G +WD +G + ID +G+ ++ A+ K
Sbjct: 22 THMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAK 81
Query: 130 K------GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---- 178
G + LA+M+I P + V F SG++A ++L +
Sbjct: 82 NLAYYHAYVGHGTEASIT--LAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVL 139
Query: 179 --TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-----------PDSPGVPK-GATYE 224
+++II YHG SGV T L V A Y
Sbjct: 140 GRPEKKKIISRWRGYHG----------SGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYY 189
Query: 225 TLTAPFND---------VSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRR 274
+ LE + E IAA I EP++G G + P + I+
Sbjct: 190 FRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQA 249
Query: 275 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIM 332
+ K+ LL+ DEV+TGF RL +++G+ PDL T+ K + P+ +
Sbjct: 250 VLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVW 309
Query: 333 EMVA----PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388
+++ G + T S +P+ + AG+ L+ + E + + A
Sbjct: 310 QVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKA- 368
Query: 389 KKAGHAICG 397
GH G
Sbjct: 369 -VGGHKNVG 376
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 9e-39
Identities = 75/334 (22%), Positives = 129/334 (38%), Gaps = 42/334 (12%)
Query: 70 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129
+ + G V +G ++WD +GN+ ID + +G+ A M+
Sbjct: 23 TDTASLNQAG--ARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQME 80
Query: 130 K------GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---- 178
+ P ++E L+ ++ P + V + NSG+E+ ++R+ R +
Sbjct: 81 ELPFYNTFFKTTHPAVVE--LSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQ 138
Query: 179 --TGRERIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKG 220
++ +I YHG H D + G+A + P K
Sbjct: 139 GKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPI----PGMAHIEQPWWYKHGKD 194
Query: 221 ATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279
T + LE + +AA + EP+ G G I P + I RI ++
Sbjct: 195 MTPDEFGVVA--ARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKY 252
Query: 280 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 337
LL+ DEV+ GF R ++FG PDL T K + G LP+GA + + E +
Sbjct: 253 DVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIA 312
Query: 338 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371
G T SG+P+ + L++ G +
Sbjct: 313 GGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQ 346
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 9e-39
Identities = 77/356 (21%), Positives = 138/356 (38%), Gaps = 54/356 (15%)
Query: 71 PVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130
P A ++ P + + +GS + D G + D + GH ++ A+ + +
Sbjct: 22 PYTANRNFLRDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLST 81
Query: 131 ---GTSFGA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------ 178
F P + LAE + P ++ V F +SG+E + +++ RA+
Sbjct: 82 LDYSPGFQYGHPLSFQ--LAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQ 139
Query: 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATL---GLP----------------DSPGVPK 219
+ ++I YHG +A G+ +
Sbjct: 140 ATKTKMIGRARGYHG----------VNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLAS 189
Query: 220 GATYETLTAPFNDVSA--LENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276
A + A L L E + IAA+ +EP+ G++G + P +L R I
Sbjct: 190 NAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREIC 249
Query: 277 KENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEM 334
++ LL+FDEV+TGF R + FGVTPDL + K + G +P+GA +I +
Sbjct: 250 NQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQT 309
Query: 335 VAPAGPMYQAGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
A S +P+A AG+ L L++ + + ++ + +
Sbjct: 310 FMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKAL 365
|
| >3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 5e-38
Identities = 62/335 (18%), Positives = 117/335 (34%), Gaps = 36/335 (10%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK------GTSFG 135
+V +G ++ D++G Y+D + G ++ A ++
Sbjct: 44 TVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRM 103
Query: 136 APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFE 188
+ + L+E ++ P V + NSG+EA ++++ + +I+
Sbjct: 104 SDQTVM--LSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRW 161
Query: 189 GCYHGHADPFLVKAGSGVA---TLGLP-------DSPGVPKGATYETLTAPFND--VSAL 236
YHG + + +G GLP P + F L
Sbjct: 162 NAYHG--VTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLAREL 219
Query: 237 ENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
E + + IA EPV+G G I P + AI I ++ +I DEV+ GF R
Sbjct: 220 EETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRT 279
Query: 295 AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVA----PAGPMYQAGTLSG 349
+ TPD K + G P+GA ++ + + T SG
Sbjct: 280 GNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASG 339
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
+P+ + + + G E + ++ + +
Sbjct: 340 HPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERL 374
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 1e-37
Identities = 87/339 (25%), Positives = 138/339 (40%), Gaps = 53/339 (15%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
S +G + DG +D + SW AI G+ Q+ AA+ + +
Sbjct: 26 VYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDA---------MS 76
Query: 142 NV------------LAEMVISAVP-SIEMVRFVNSGTEACMGV---LRLARAF-----TG 180
+V L +++ P +E V +SG+ A V +++A +
Sbjct: 77 HVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVA---VEVAMKMALQYWQAKGEA 133
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATL-------GLPDSPGVPKGATYETLTAPFNDV 233
R+R + F YHG D F + LP++ P + D+
Sbjct: 134 RQRFLTFRNGYHG--DTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM 191
Query: 234 SALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF
Sbjct: 192 VGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGF 251
Query: 293 -RLAYGG---AQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME--MVAPAGPMYQAG 345
R G A E+ + PD+ LGK + GG + + A R++ E AG
Sbjct: 252 GRT---GKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
T GNPLA A +L L+ + + I +L + +
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQL 347
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 3e-37
Identities = 85/345 (24%), Positives = 144/345 (41%), Gaps = 65/345 (18%)
Query: 82 PIVFDSVKGSH---MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPC 138
P+V + G+ + D E +D + SW AI GH + AL ++
Sbjct: 55 PVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRV-------- 106
Query: 139 LLENV------------LAEMVISAVP-SIEMVRFVNSGTEACMGV---LRLARAF---- 178
+ +V LA++++ P ++ V F +SG+ + V ++A +
Sbjct: 107 -MNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVS---VEVAAKMALQYWRGR 162
Query: 179 --TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF---- 230
G+ R++ + G YHG D F ++ P + + AP
Sbjct: 163 GLPGKRRLMTWRGGYHG--DTF------LAMSICDPHGGMHSLWTDVLAAQVFAPQVPRD 214
Query: 231 ---NDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFD 286
+A E + GE+AA+++EPVV G G P +L+ +R I + LLIFD
Sbjct: 215 YDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFD 274
Query: 287 EVMTGF-RLAYGG---AQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME--MVAPAG 339
E+ TGF R G A ++ GV+PD+ +GK + GG L + A D+ AG
Sbjct: 275 EIATGFGRT---GALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAG 331
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
+ T NPLA + +++ L + ++ LT G+
Sbjct: 332 ALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGL 376
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-36
Identities = 78/374 (20%), Positives = 130/374 (34%), Gaps = 47/374 (12%)
Query: 55 EAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG 114
+A + A L P S A G V +G + D +G E +D + IG
Sbjct: 16 QALDAAHHLHP---FSANNALGEEG--TRVITRARGVWLNDSEGEEILDAMAGLWCVNIG 70
Query: 115 HADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167
+ D++ M++ + LA+ + P + V F G+EA
Sbjct: 71 YGRDELAEVAARQMRELPYYNTFFKTTHVPAIA--LAQKLAELAPGDLNHVFFAGGGSEA 128
Query: 168 CMGVLRLARAF------TGRERIIKFEGCYHG--------------HAD-PFLVKAGSGV 206
+R+ R + + II + YHG HA + V
Sbjct: 129 NDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLI----PDV 184
Query: 207 ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPK 265
+ P+ E LE +AA I EPV G G I
Sbjct: 185 HHINQPNWWAEGGDMDPEEFGLAR--ARELEEAILELGENRVAAFIAEPVQGAGGVIVAP 242
Query: 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVG 323
+ I+RI + LLI DEV+ GF R + G+ P + T+ K + G P+G
Sbjct: 243 DSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIG 302
Query: 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 383
++ ++ T SG+P+A + L+ L+E +++ + +
Sbjct: 303 GSIVCDEVAHVIG-KDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKE 361
Query: 384 IIDAGKKAGHAICG 397
+A H + G
Sbjct: 362 KWEA--LTDHPLVG 373
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-34
Identities = 78/488 (15%), Positives = 139/488 (28%), Gaps = 111/488 (22%)
Query: 82 PIVFDSVKGSHMWDID------GNEYIDYVGSWGPAIIGHADDQVLAA--------LGET 127
V DS G + ++ D SW LA G
Sbjct: 357 VTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHV 416
Query: 128 MKKGTSFGAPCLLENVLAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAF------- 178
M L+ AE+++ V R F ++G+ A L++A
Sbjct: 417 MFPE--NVYEPALK--CAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNF 472
Query: 179 --------TGRERIIKFEGCYHG----------------------------HADPFLVKA 202
++I G YHG DP V
Sbjct: 473 CEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFL 532
Query: 203 GSGVATLGLPD--SPGVPKGATYETLTAPFND-----------VSALENLFE-----NNK 244
+G + LP+ S P+ T+ + F+ + L +
Sbjct: 533 SNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQS 592
Query: 245 GEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 302
+ A+I+EPV+ G G P F + + +IFDEV TGF RL E
Sbjct: 593 AHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTEL 652
Query: 303 FGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMV---APAGPMYQAGTLSGNPLAMTAGI 358
G PD+ K++ GG +P+ + + + + + S + +
Sbjct: 653 LGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAA 712
Query: 359 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKK--AGHAICGGY-ISGMFGFFFTEGPVYN 415
++ K+P T + L + + + + H+ + G +
Sbjct: 713 KAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADA-- 770
Query: 416 FEDAKKSETTKFARFYRGMLEEGV---------YFAPSQFEAGFTSLAHSSDDIQHTITA 466
+ + E+G+ Y S + + +T
Sbjct: 771 --SNSGYASLYAKSLLIMLREDGIFTRPLGNVIYLMC--------GPCTSPEICRRLLTK 820
Query: 467 AEKVLRQI 474
K L +
Sbjct: 821 LYKRLGEF 828
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 3e-34
Identities = 66/343 (19%), Positives = 120/343 (34%), Gaps = 57/343 (16%)
Query: 70 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129
+ V +G ++ DG ID A +G+ +++ A+
Sbjct: 27 QEMAKLGKSA--QPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAM 84
Query: 130 K-----GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF----- 178
LAE + + P + + F G+ A LR + +
Sbjct: 85 VLPYASPWYMATSPAAR--LAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLG 142
Query: 179 -TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-----------PDSPGV--------- 217
++RII YHG S T +
Sbjct: 143 RPQKKRIIVRYDGYHG----------STALTAACTGRTGNWPNFDIAQDRISFLSSPNPR 192
Query: 218 -PKGATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRI 275
+ E V E+ E+ + IAA + EP++ + G I P + + I
Sbjct: 193 HAGNRSQEAFLDDL--VQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAI 250
Query: 276 TKENGALLIFDEVMTGF-RL-AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIM 332
+++ L I DEV+TGF R + +++ FGV PD+ T K + G +P+G ++
Sbjct: 251 CEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVL 310
Query: 333 EMVA---PAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPGTYE 371
++ G + G T S P+A A + ++ ++ G +
Sbjct: 311 ARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVD 353
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 6e-07
Identities = 62/435 (14%), Positives = 111/435 (25%), Gaps = 136/435 (31%)
Query: 12 LGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNS- 70
LSC LT RF + +S++ T + + K L
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYL---DCRPQ 316
Query: 71 --PVRAFKSVGGQPIVFDSV-----KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 123
P + P + G WD +V
Sbjct: 317 DLPREV---LTTNPRRLSIIAESIRDGLATWD-----NWKHVNCD--------------K 354
Query: 124 LGETMKKGTSFGAPCLLENVLAEMVI----SAVPSIEMVRF-VNSGTEACMGVL-RLARA 177
L ++ + P + + + + +P+I + + M V+ +L +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237
LV+ +T+ +P Y L + AL
Sbjct: 415 --------------------SLVEKQPKESTISIPS--------IYLELKVKLENEYALH 446
Query: 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPD--FLNAIRR--ITKENGALLIFDEVMTGFR 293
+ + + I P D F + I E+ E MT FR
Sbjct: 447 RSI------VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH------PERMTLFR 494
Query: 294 LAYGGAQEYFGVTPDLTTLG-KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352
+ + D L KI A G +
Sbjct: 495 MVF----------LDFRFLEQKIRHDSTAWNASGSILN---------------------- 522
Query: 353 AMTAGIHTLKRLKEPGTYE-YLNKITGELTQGIIDAGK---KAG-HAICGGYISGM-FGF 406
TL++LK Y+ Y+ + + + K + IC Y +
Sbjct: 523 -------TLQQLK---FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 407 FFTEGPVYNFEDAKK 421
+ ++ E+A K
Sbjct: 573 MAEDEAIF--EEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 3e-05
Identities = 56/386 (14%), Positives = 98/386 (25%), Gaps = 102/386 (26%)
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K+++ V AF V D K I E ID++ + A
Sbjct: 19 KDILS--VFED--AFVDNFDCKDVQDMPKS-----ILSKEEIDHI-----IMSKDAVSGT 64
Query: 121 LAALGETMKKGTSFGAPCLLENVLA---EMVISAV------PSIEMVRFVNSGTEACMGV 171
L + K +E VL + ++S + PS+ ++
Sbjct: 65 LRLFWTLLSKQEE-MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 172 LRLARAFTGRERIIKF--EGCYHGHADPFLV---KAGSG---VATLGLPDSP---GVPKG 220
A+ R + + ++ GSG VA +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 221 ATYETL---TAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277
+ L +P + L+ L + S +RR+ K
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS----SNIKLRIHSIQAELRRLLK 239
Query: 278 ENG---ALLIFDEV-----MTGFRL---------------AYGGAQEY--------FGVT 306
LL+ V F L A +T
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 307 PD--LTTLGKIIG---GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 361
PD + L K + LP + L+ NP + + I
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPR--------------------EV--LTTNPRRL-SIIAES 336
Query: 362 KRLKEPGTYEYLNKITGELTQGIIDA 387
R T++ + + II++
Sbjct: 337 IR-DGLATWDNWKHVNCDKLTTIIES 361
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Length = 427 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 7e-07
Identities = 56/270 (20%), Positives = 93/270 (34%), Gaps = 58/270 (21%)
Query: 231 NDVSALEN-LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 288
N V L+ L K ++LE V G IAP L + + K++GA+++ DE
Sbjct: 178 NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAH 233
Query: 289 MTGFRLAYG----GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAG 339
GF +G G E G+ + T K +G VG + E V A
Sbjct: 234 SMGF---FGPNGRGVYEAQGLEGQIDFVVGTFSKSVGT---VGGFVVSNHPKFEAVRLAC 287
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAG-----KKAGH 393
Y S P + ++++L E L L G+ G +
Sbjct: 288 RPYIFTA-SLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMGFRLGTETCDS 346
Query: 394 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---G- 449
AI V ED +++ A ++ +L+ G+Y ++ A G
Sbjct: 347 AIV---------------AVM-LEDQEQA-----AMMWQALLDGGLYVNMARPPATPAGT 385
Query: 450 ----FT-SLAHSSDDIQHTITAAEKVLRQI 474
+ H+ IQ + + R +
Sbjct: 386 FLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Length = 398 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 7e-07
Identities = 53/270 (19%), Positives = 87/270 (32%), Gaps = 60/270 (22%)
Query: 231 NDVSALEN-LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 288
N++ L L + I + + G I L + I E A ++ D+
Sbjct: 157 NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAH 212
Query: 289 MTGFRLAYG-GAQEYFGVTPD----LTTLGKIIGGGLPVGAY-GGRRDIMEMVAPAGP-- 340
G G G +FG+ D + T K + +G + G D+++ +
Sbjct: 213 SLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLAS---LGGFVAGDADVIDFLKHNARSV 269
Query: 341 MYQAGTLSGNPLAMTAGIHTLKRLK----EPGTYEYLNKITGELTQGIIDAG---KKAGH 393
M+ A A A TLK L+ EP E L K T ++D G
Sbjct: 270 MFSASM----TPASVAS--TLKALEIIQNEPEHIEKLWKNTDYAKAQLLDHGFDLGATES 323
Query: 394 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---GF 450
I P++ +K T + + ++GV+ P A
Sbjct: 324 PIL---------------PIF-IRSNEK--TFWVTK---MLQDDGVFVNPVVSPAVPAEE 362
Query: 451 T------SLAHSSDDIQHTITAAEKVLRQI 474
+ H+ D I I KV +Q
Sbjct: 363 SLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* Length = 401 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 7e-07
Identities = 58/269 (21%), Positives = 81/269 (30%), Gaps = 57/269 (21%)
Query: 231 NDVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 288
NDV+ L L + +I E V G P + I I +E GAL DEV
Sbjct: 162 NDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVH 217
Query: 289 MTGFRLAYG----GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAG 339
G YG G E G+ + TL K G G Y +++ V
Sbjct: 218 AVGM---YGPRGAGVAERDGLMHRIDIFNGTLAKAYGV---FGGYIAASARMVDAVRSYA 271
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI---TGELTQGIIDAG---KKAGH 393
P + T S P ++ LK + + L + G G
Sbjct: 272 PGFIFST-SLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGS 330
Query: 394 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAG- 449
I PV D T + + + GVY P F G
Sbjct: 331 HIV---------------PVV-IGDPVH--TKAVSD--MLLSDYGVYVQPINFPTVPRGT 370
Query: 450 ----FT-SLAHSSDDIQHTITAAEKVLRQ 473
FT S H I + A + + +
Sbjct: 371 ERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A Length = 409 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 9e-07
Identities = 40/263 (15%), Positives = 79/263 (30%), Gaps = 50/263 (19%)
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-M 289
N+ L L + + I I+++ + G IAP L + I+KE G L+ DE
Sbjct: 173 NNCDHLRMLIQRHGPGI--IVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHS 226
Query: 290 TGFRLAYG-GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAGPMYQ 343
G G G G+T ++ +L K ++ V
Sbjct: 227 LGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY---RAGAIWCNNEVNRCVPFISYPAI 283
Query: 344 AGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAGKKAG--HAICGGYI 400
+ + P TL+ ++ ++L+++ +L G+ G I
Sbjct: 284 FSS-TLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSESQII---- 338
Query: 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAG-----FT- 451
+ D + T K + + GV+ + +
Sbjct: 339 -----------GLE-TGDERN--TEKVRDY---LESNGVFGSVFCRPATSKNKNIIRLSL 381
Query: 452 SLAHSSDDIQHTITAAEKVLRQI 474
+ + + I I +
Sbjct: 382 NSDVNDEQIAKIIEVCSDAVNYG 404
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Length = 384 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 12/109 (11%)
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-M 289
NDV+ L L + ++ E V G AP L I+++T+++ L+ D+
Sbjct: 153 NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG 208
Query: 290 TGFRLAYG-GAQEYFGVTPDLT--TLGKIIGGGLPVGAY-GGRRDIMEM 334
TG G G+ V P+L T GK G GA + +
Sbjct: 209 TGVIGEQGRGSCWLQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADY 254
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} Length = 399 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 7e-06
Identities = 60/270 (22%), Positives = 97/270 (35%), Gaps = 56/270 (20%)
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNS-----GFIAPKPDFLNAIRRITKENGALLIF 285
N + LE + + A L + + G IA L +I + + AL++
Sbjct: 157 NAMGDLEAKLKEADEKGARFKL--IATDGVFSMDGIIAD----LKSICDLADKYNALVMV 210
Query: 286 DEV-MTGFRLAYG-GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPA 338
D+ GF G G EY GV + TLGK +GG G Y G ++I+E +
Sbjct: 211 DDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGA--SGGYTSGHKEIIEWLRNR 268
Query: 339 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY--EYLNKITGELTQGIIDAG---KKAGH 393
Y + P+ + + L+ LK G + L + + G+ G H
Sbjct: 269 SRPYLFSN-TVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLGFQLVPGNH 327
Query: 394 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY---FAPSQFEAG- 449
I PV DA+ T A +L+EG+Y F+ G
Sbjct: 328 PII---------------PVM-LGDAQL--ATNMADH---LLQEGIYVVGFSYPVVPMGK 366
Query: 450 ----FT-SLAHSSDDIQHTITAAEKVLRQI 474
S H+ + I A +V +++
Sbjct: 367 ARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 4e-05
Identities = 36/242 (14%), Positives = 67/242 (27%), Gaps = 34/242 (14%)
Query: 140 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199
L++ E+ + + + + G A + + +++ K + F
Sbjct: 81 LKDKAKELF-----NYDYIIPAHQGRGAENILFPVLLK--YKQKEGKAKNPVFISNFHFD 133
Query: 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFN---DVSALENLFENNKGEIAAIILEPVV 256
A + K ET + D+ L+ + + I+ V
Sbjct: 134 TTAAHVELNGCKAINIVTEKAFDSET-YDDWKGDFDIKKLKENIAQHGADNIVAIVSTVT 192
Query: 257 GNSGFIAPKP-DFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFG--------VTP 307
NS P L + I K++G ++ D AY V
Sbjct: 193 CNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARF-CENAYFIKARDPKYKNATIKEVIF 251
Query: 308 DLTTLGKII------GGGLPVGAYGGRRDIMEM-------VAPAGPMYQAGTLSGNPLAM 354
D+ + L +G RD E+ P G L+G +A
Sbjct: 252 DMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAA 311
Query: 355 TA 356
Sbjct: 312 MV 313
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 Length = 401 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 93/449 (20%), Positives = 150/449 (33%), Gaps = 139/449 (30%)
Query: 84 VFDSVKGSHMWDIDGNEYI-----DYVGSWGPAIIGHADDQVLAALGETMKK-GTSFGAP 137
+ S + + + DG+ I +Y+G + H ++AA M G +
Sbjct: 30 IITSAQQADITVADGSHVINFCANNYLG-----LANH--PDLIAAAKAGMDSHGFGMAS- 81
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL--RLARAFTGRERIIKFEGCYHGHA 195
VRF+ GT+ L +LA AF G E I + C+
Sbjct: 82 --------------------VRFIC-GTQDSHKELEQKLA-AFLGMEDAILYSSCFD--- 116
Query: 196 DPFLVKAGSGV--ATLGLPD------------------SPGVPKGATYETLTAPFNDVSA 235
A G+ LG D A + ND+
Sbjct: 117 ------ANGGLFETLLGAEDAIISDALNHASIIDGVRLC-----KA--KRYRYANNDMQE 163
Query: 236 LENLFENNKGEIAAIILEPVVGNS-----GFIAPKPDFLNAIRRITKENGALLIFDEV-M 289
LE + + A +L + + G IA L + + + AL++ D+
Sbjct: 164 LEARLKEAREAGARHVL--IATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHA 217
Query: 290 TGFRLAYG-GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAGPMYQ 343
GF G G+ EY V + TLGK +GG G Y R++++E + Q
Sbjct: 218 VGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS--GGYTAARKEVVEW------LRQ 269
Query: 344 AG-----TLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAG---KKAGHA 394
+ S P + A I L+ ++ + L + + + AG A HA
Sbjct: 270 RSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLAGADHA 329
Query: 395 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY---FAPSQFEAGFT 451
I PV DA KFAR + +EG+Y F G
Sbjct: 330 II---------------PVM-LGDAVV--AQKFARE---LQKEGIYVTGFFYPVVPKGQA 368
Query: 452 ------SLAHSSDDIQHTITAAEKVLRQI 474
S AH+ + I + A ++ +Q+
Sbjct: 369 RIRTQMSAAHTPEQITRAVEAFTRIGKQL 397
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 474 | |||
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 100.0 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 100.0 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 100.0 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 100.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 100.0 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 100.0 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 100.0 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 100.0 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 100.0 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 100.0 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 100.0 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 100.0 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 100.0 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 100.0 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 100.0 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 100.0 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 100.0 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 100.0 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 100.0 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 100.0 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 100.0 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 100.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 100.0 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 100.0 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 100.0 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 100.0 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 100.0 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.98 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.98 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.98 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.98 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.98 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.98 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.98 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.98 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.98 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.98 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.98 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.97 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.97 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.97 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.97 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.97 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.97 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.97 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.97 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.97 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.97 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.97 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.97 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.97 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.97 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.97 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.97 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.97 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.97 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.97 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.97 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.97 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.97 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.96 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.96 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.96 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.96 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.96 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.96 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.96 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.96 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.96 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.96 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.96 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.96 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.95 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.95 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.95 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.95 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.95 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.95 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.95 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.95 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.95 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.95 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.94 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.94 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.94 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.94 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.94 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.94 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.94 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.94 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.94 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.94 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.94 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.94 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.94 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.94 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.94 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.94 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.93 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.93 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.93 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.93 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.93 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.93 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.93 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.92 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.92 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.92 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.92 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.92 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.92 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.92 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.92 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.92 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.92 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.92 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.91 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.91 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.91 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.91 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.91 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.91 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.91 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.91 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.91 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.9 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.9 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.9 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.9 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.9 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.9 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.9 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.9 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.9 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.9 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.9 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.89 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.89 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.89 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.89 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.89 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.89 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.89 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.89 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.89 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.89 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.88 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.88 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.88 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.88 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.88 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.88 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.88 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.87 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.87 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.86 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.85 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.85 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.85 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.84 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.84 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.84 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.84 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.83 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.82 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.82 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.81 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.81 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.81 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.81 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.8 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.8 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.8 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.79 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.79 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.77 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.76 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.76 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.76 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.75 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.75 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.75 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.75 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.73 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.72 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.64 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.61 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.61 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.61 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.54 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.46 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.45 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.44 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.44 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 98.87 |
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-81 Score=629.85 Aligned_cols=406 Identities=33% Similarity=0.547 Sum_probs=373.7
Q ss_pred CCchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHH
Q 011959 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127 (474)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~ 127 (474)
...++|+++++++++++|+|+++++|.|.++ |+++++|+|+|+||.|||+||||+++||++++||+||+|++|+++|
T Consensus 39 ~~~p~s~~~~~~a~~~~pgg~~~~~~~~~~~---P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q 115 (454)
T 4ao9_A 39 DANPASQRQFEAQARYMPGANSRSVLFYAPF---PLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEA 115 (454)
T ss_dssp HHCHHHHHHHHHHTTTSGGGCSSGGGCCSSC---CCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHH
T ss_pred hcCcHhHHHHHHHhhhCCCCCCCCccccCCC---CccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHH
Confidence 3467899999999999999999999988764 9999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCc
Q 011959 128 MKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVA 207 (474)
Q Consensus 128 ~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~ 207 (474)
++++..++.++..+.+|+++|++++|+.++|+|+|||+|||+.|||+||.+++|++||.|+++|||+++.+....+.
T Consensus 116 ~~~~~~~~~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~--- 192 (454)
T 4ao9_A 116 MQGGINLTGHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSP--- 192 (454)
T ss_dssp HHTCSCCCSEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCT---
T ss_pred HhcCCCccCCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccC---
Confidence 99988787788888999999999999999999999999999999999999999999999999999988765433221
Q ss_pred cCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 011959 208 TLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287 (474)
Q Consensus 208 ~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DE 287 (474)
.. ...+...+||||++.+++.++++++++++||+||+++++|+++|+++||++|+++|++||++||+||
T Consensus 193 -------~~----~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DE 261 (454)
T 4ao9_A 193 -------TT----VPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDE 261 (454)
T ss_dssp -------TS----CCSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred -------cc----CCCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEEC
Confidence 11 2235788999999999999998888999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcC-CCCcccccCCCCChHHHHHHHHHHHHhcC
Q 011959 288 VMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366 (474)
Q Consensus 288 v~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~-~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 366 (474)
|||| |+|.+++++++|+.||++|++|+++||+|+|++++++++++.+.+ .+..+|++||++||++|+|++++|+++++
T Consensus 262 V~tG-R~G~~~a~e~~gv~PDi~t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~ 340 (454)
T 4ao9_A 262 VMTS-RLAPHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT 340 (454)
T ss_dssp TTGG-GGSTTCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC
T ss_pred CCcC-CCccccchhccCCCCcEEEeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc
Confidence 9998 999999999999999999999999999999999999999999975 34677899999999999999999999998
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC
Q 011959 367 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF 446 (474)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 446 (474)
+++++++++++++|+++|+++..+++++.++++.|+|++++|.+.++.++.+....+......+...|+++||++.|.+
T Consensus 341 ~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~- 419 (454)
T 4ao9_A 341 PEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG- 419 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC-
T ss_pred cChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC-
Confidence 9999999999999999999999999999999999999999998887788777777777888889999999999999876
Q ss_pred cceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 447 EAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 447 ~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+++++.||++|||+++++|++++.+
T Consensus 420 -~~~~s~~~T~~dId~~l~al~~~l~~ 445 (454)
T 4ao9_A 420 -FVVLSLPLTDADIDRYVAAIGSFIGG 445 (454)
T ss_dssp -EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999976
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-74 Score=581.44 Aligned_cols=401 Identities=25% Similarity=0.366 Sum_probs=347.4
Q ss_pred CCCchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHH
Q 011959 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (474)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (474)
..+.++|+++++++++++++|+.++ +|+++++++|+|+||.|||+||||.++++++++||+||+|++|+++
T Consensus 21 ~iPGP~s~~l~~r~~~~~~~~~~~~---------~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ 91 (456)
T 4atq_A 21 AFPGPKSQALAERRSAVVAAGVASG---------VPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQE 91 (456)
T ss_dssp SSSCHHHHHHHHHHHHHBCTTCCCS---------CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCCCCCC---------CCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHH
Confidence 4667899999999999999988654 4999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC---CCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHh
Q 011959 127 TMKKGTS---FGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201 (474)
Q Consensus 127 ~~~~~~~---~~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~ 201 (474)
|+++..+ +..+++...+|+++|.+..| ..++++|+|||+|||+.|||+||.+++|.+||.|+++|||+++++++.
T Consensus 92 q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~ 171 (456)
T 4atq_A 92 AAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMAL 171 (456)
T ss_dssp HHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHH
T ss_pred HHhhccCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCcccccccc
Confidence 9998542 34568889999999999998 368999999999999999999999999999999999999999999998
Q ss_pred cCCCCc-cCCC-CCCCCCCCCCCCceEEccC-----------CCHHHHHHHHhc-----CCCCeEEEEEccccCCCCccc
Q 011959 202 AGSGVA-TLGL-PDSPGVPKGATYETLTAPF-----------NDVSALENLFEN-----NKGEIAAIILEPVVGNSGFIA 263 (474)
Q Consensus 202 ~g~~~~-~~~~-~~~~g~~~~~~~~~~~~~~-----------~d~~~le~~l~~-----~~~~~a~vi~ep~~~~~G~i~ 263 (474)
++.... .... |..+ .+..+|+ ++.+.+++.++. +++++++||+||+++++|.+.
T Consensus 172 t~~~~~~~~~~~p~~~--------~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~ 243 (456)
T 4atq_A 172 TAKAMPYKTNFGPFAP--------EVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIV 243 (456)
T ss_dssp CCCCTTTTTTSCSCCS--------SEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBC
T ss_pred ccCccccccCCCCccc--------cceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccc
Confidence 876431 1111 1111 2334433 234444443321 356899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcc
Q 011959 264 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY 342 (474)
Q Consensus 264 ~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~ 342 (474)
|+++||++|+++|++||++||+||||||| |+|.+|+++++|+.||++|++|+++||+|+|++++++++++.+. +..
T Consensus 244 p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg~P~~av~~~~~i~~~~~---~~~ 320 (456)
T 4atq_A 244 PAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVH---PGG 320 (456)
T ss_dssp CCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSC---TTS
T ss_pred cchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCcCCceeeEecHHHHhccc---ccC
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999887 456
Q ss_pred cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc-----CCeeEEeeeceeEEEEEecCCCcCcc
Q 011959 343 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-----GHAICGGYISGMFGFFFTEGPVYNFE 417 (474)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-----~~~~~v~~~g~~~~i~~~~~~~~~~~ 417 (474)
|++||++||++|++++++|++++++++.+++++.+++++++|+++..++ +++.+|||.|+|++++|.++.
T Consensus 321 ~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~----- 395 (456)
T 4atq_A 321 LGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPG----- 395 (456)
T ss_dssp SCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTT-----
T ss_pred CCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCC-----
Confidence 8899999999999999999999999999999999999999999998775 568899999999999997642
Q ss_pred cccccchHHHHHHHHHHHHCCeEecccCC--cceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 418 DAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
...++.+....+.+.|+++|+++.+.+. +.+++ ++++|+++||+++++|+++++.
T Consensus 396 -~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 396 -SKEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp -SCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CCCcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1235667778899999999999987653 34554 6999999999999999999975
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-72 Score=566.82 Aligned_cols=413 Identities=17% Similarity=0.210 Sum_probs=336.9
Q ss_pred HHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC
Q 011959 54 EEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS 133 (474)
Q Consensus 54 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~ 133 (474)
+.+.++++++...+.+ +++.+... .|++|++|+|+|+||.|||+||||.++||++++||+||+|++|+++|+++...
T Consensus 25 ~~~~~~~~~~~~h~~t-~~~~~~~~--~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~ 101 (473)
T 4e3q_A 25 QSWEARAETYSLYGFT-DMPSLHQR--GTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPG 101 (473)
T ss_dssp CSHHHHHHHHBCCSSC-CHHHHHHH--CCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCC
T ss_pred ccHHHHHhhhcCCCCC-ChhhhccC--CCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccc
Confidence 3466677777765543 44444433 39999999999999999999999999999999999999999999999998542
Q ss_pred ----CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhc
Q 011959 134 ----FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKA 202 (474)
Q Consensus 134 ----~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~ 202 (474)
++.+++...+|+++|++..| +.++|+|+|||+|||+.|||+||.+ +++.+||.++++|||.+.++++.+
T Consensus 102 ~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~t 181 (473)
T 4e3q_A 102 YHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMT 181 (473)
T ss_dssp CCCCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHS
T ss_pred ccccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccccc
Confidence 34467889999999999998 6899999999999999999999876 678899999999999999999998
Q ss_pred CCCCccCCCCCCCCCCCCCCCceEEccCC----------CHHHHHHHHhc-CCCCeEEEEEccccCCCCcccCCHHHHHH
Q 011959 203 GSGVATLGLPDSPGVPKGATYETLTAPFN----------DVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (474)
Q Consensus 203 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------d~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (474)
+........+..+++........+..... ..+++++.+.+ +++++++||+||+++++|++.|+++||++
T Consensus 182 g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~ 261 (473)
T 4e3q_A 182 GKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQA 261 (473)
T ss_dssp CCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHH
T ss_pred ccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHH
Confidence 86433221122222111000000000000 13456665553 55689999999999999999999999999
Q ss_pred HHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcC----CCCccccc
Q 011959 272 IRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP----AGPMYQAG 345 (474)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~----~~~~~~~~ 345 (474)
|+++|++||++||+|||+||| |+|.+|+++++|+.||++|++|++++| +|+|++++++++++.+.. .....|++
T Consensus 262 lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~ 341 (473)
T 4e3q_A 262 ILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGF 341 (473)
T ss_dssp HHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCC
Confidence 999999999999999999999 999999999999999999999999988 899999999999988753 13567899
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchH
Q 011959 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (474)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (474)
||++||++|++++++|++++++++++++++++++|+++|+++. +++.+.++|+.|+|+++++..+..... ...++..
T Consensus 342 T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~-~~~~v~~vRG~Gl~~gielv~~~~~~~--~~~~~~~ 418 (473)
T 4e3q_A 342 TASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIA-ERPNIGEYRGIGFMWALEAVKDKASKT--PFDGNLS 418 (473)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHT-TSTTEEEEEEETTEEEEEECSBTTTTB--CCCGGGC
T ss_pred CCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHh-cCCCeeEEeecceEEEEEEecCccccc--cccccHH
Confidence 9999999999999999999999999999999999999999875 456788999999999999975432110 1112334
Q ss_pred HHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 426 KFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 426 ~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
....+.+.|+++|+++.+.+ +.+++ ++++|++++|+++++|++++++
T Consensus 419 ~~~~~~~~~~~~Gll~~~~g-~~i~l~PPL~it~~eid~~~~~l~~al~~ 467 (473)
T 4e3q_A 419 VSERIANTCTDLGLICRPLG-QSVVLCPPFILTEAQMDEMFDKLEKALDK 467 (473)
T ss_dssp HHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCcEEEecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 55788999999999999876 34444 6999999999999999998875
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-68 Score=540.90 Aligned_cols=425 Identities=57% Similarity=0.968 Sum_probs=377.6
Q ss_pred CchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 128 (474)
.+++|+++++++++++|+|+++++|.|..++.+|+++++++|+++||.|||+||||++++++++|||+||+|++|+.+++
T Consensus 3 ~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~ 82 (429)
T 3k28_A 3 KFDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVA 82 (429)
T ss_dssp CCHHHHHHHHHHTTTSGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999987777899999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCcc
Q 011959 129 KKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (474)
Q Consensus 129 ~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (474)
+++..++++++...+|++++++++++.++++|+|||+||++.|+++++.++++++||.++++|||++..++...+.+...
T Consensus 83 ~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 162 (429)
T 3k28_A 83 ERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVAT 162 (429)
T ss_dssp HHCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC--
T ss_pred hhCcCcCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccc
Confidence 98766778899999999999999987899999999999999999999988999999999999999999888777765544
Q ss_pred CCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011959 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (474)
Q Consensus 209 ~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (474)
...|...+++.....+++.+|++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv 242 (429)
T 3k28_A 163 LGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEV 242 (429)
T ss_dssp ---CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECT
T ss_pred cCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 44454555544334568889999999999999866567999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCC
Q 011959 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (474)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (474)
|+||++|.+++.+++++.||++||||++++|+|+||+++++++++.+.+.+...+.+|+++|++++++++++|+.++ ++
T Consensus 243 ~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-~~ 321 (429)
T 3k28_A 243 MTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-PE 321 (429)
T ss_dssp TTTTTSSTTHHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC-HH
T ss_pred ccccccCcchHHHHhCCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH-HH
Confidence 99997777788889999999999999999999999999999999988754456678899999999999999999876 78
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcc
Q 011959 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 448 (474)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~ 448 (474)
++++++++++++++.|+++...++.+..+++.|+++++++...+..++.....++......+.+.|+++||++.+++...
T Consensus 322 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~ 401 (429)
T 3k28_A 322 SYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEG 401 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCCCCC
Confidence 89999999999999999988888888899999999999987665556655555666777889999999999999987777
Q ss_pred eEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 449 GFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 449 ~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+++++.+|++++++++++|+++++++
T Consensus 402 ~r~~~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 402 LFLSTVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp BCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999998764
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-68 Score=539.85 Aligned_cols=426 Identities=47% Similarity=0.871 Sum_probs=373.9
Q ss_pred CCchhHHHHHHHHhhhCCCCCCCccccccccC-CCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHH
Q 011959 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (474)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (474)
.+.++|+++++++++++|+|+++++|.|..++ ..|+++++++|+|+||.||++||||.++++++++||+||+|++|+.+
T Consensus 3 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~ 82 (434)
T 3l44_A 3 VKFTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITT 82 (434)
T ss_dssp SCCHHHHHHHHHHHHHBGGGCSSGGGSSGGGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHH
T ss_pred CCChhHHHHHHHHHhhCCCCcCccccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHH
Confidence 34678999999999999999999999887665 57999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCC
Q 011959 127 TMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (474)
Q Consensus 127 ~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (474)
+++++..++++++...+|++++++.+++.++++|+|||+||++.|+++++.++++++||+++++|||++..++...+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~ 162 (434)
T 3l44_A 83 AAENGVLYGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGP 162 (434)
T ss_dssp HHHHCSCCSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-----
T ss_pred HHHhCcCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcc
Confidence 99987667788999999999999999878999999999999999999999889999999999999999998888777655
Q ss_pred ccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011959 207 ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (474)
Q Consensus 207 ~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (474)
.....|...+++.....+++.+|++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~D 242 (434)
T 3l44_A 163 STLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYD 242 (434)
T ss_dssp --CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEE
T ss_pred cccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 44444545555443445688999999999999998655679999999999999999999999999999999999999999
Q ss_pred ccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC
Q 011959 287 EVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366 (474)
Q Consensus 287 Ev~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 366 (474)
|||+|||+|.+++.+++++.||++||||++++|+|+||+++++++++.+.+.+...+++|+++|++++++++++|+.+++
T Consensus 243 Ev~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~ 322 (434)
T 3l44_A 243 EVITAFRFMYGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ 322 (434)
T ss_dssp CTTTTTTSSSSCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS
T ss_pred ccccceeccccHHHHHcCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc
Confidence 99999988888888999999999999999999999999999999999887544567888999999999999999999888
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC
Q 011959 367 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF 446 (474)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 446 (474)
++++++++++++++++.|+++...++....+++.|+|+++++......++.....++......+.+.|+++||++.+++.
T Consensus 323 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 402 (434)
T 3l44_A 323 EGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKY 402 (434)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCC
Confidence 89999999999999999999887788888899999999999965444443333334555667889999999999999887
Q ss_pred cceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 447 EAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 447 ~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+.+++++.+|++++++++++|++++++
T Consensus 403 ~~~rl~~~~t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 403 EAWFLTTEHTKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp CCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecccCHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999999864
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-67 Score=534.53 Aligned_cols=425 Identities=53% Similarity=0.952 Sum_probs=367.5
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
+++|+++++++++++|+|+++++|.|..++..|+++++++|+|+||.||++||||.++++++++||+||+|++|+.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~ 83 (429)
T 4e77_A 4 MSKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVE 83 (429)
T ss_dssp CCHHHHHHHHHHHHSGGGCSSGGGGTTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHH
Confidence 34789999999999999999998988877778999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccC
Q 011959 130 KGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (474)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (474)
++..++++++...+|++++++.+++.++++|+|||+||++.|+++++.++++++||+++++|||.+...+...+.+....
T Consensus 84 ~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 163 (429)
T 4e77_A 84 RGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTL 163 (429)
T ss_dssp TCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC----------------
T ss_pred hCcccCCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCccccc
Confidence 87667788999999999999999878999999999999999999999999999999999999999987776666544333
Q ss_pred CCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011959 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (474)
Q Consensus 210 ~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (474)
..+...+++......++.++++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~ 243 (429)
T 4e77_A 164 GQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVM 243 (429)
T ss_dssp --CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETT
T ss_pred CCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 33445566555566788999999999999998766689999999999999999999999999999999999999999999
Q ss_pred cCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCH
Q 011959 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (474)
Q Consensus 290 ~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (474)
+|||+|..+..+++++.||++||||++++|+|+||+++++++++.+...+...+.+||++|+++++++.++|+.++++++
T Consensus 244 ~g~r~g~~~~~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 323 (429)
T 4e77_A 244 TGFRVALAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGV 323 (429)
T ss_dssp TBTTTBTTCHHHHTTCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTH
T ss_pred cCcccCcchHHHhcCCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCH
Confidence 99988888888999999999999999999999999999999999887544556788999999999999999999977899
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecC-CCcCcccccccchHHHHHHHHHHHHCCeEecccCCcc
Q 011959 370 YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 448 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~ 448 (474)
.++++++++++++.|+++...++....+++.|+|+++++.+. +..++.....++.....++.+.|+++||++.+++.+.
T Consensus 324 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~ 403 (429)
T 4e77_A 324 YETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFEA 403 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCCCC
Confidence 999999999999999998888888888999999999999764 3455555555666677889999999999999988777
Q ss_pred eEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 449 GFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 449 ~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+++++.+|++++++++++|+++++++
T Consensus 404 ~~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (429)
T 4e77_A 404 GFMSLAHSNEDIQKTVNAARRCFAKL 429 (429)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred EEEeccCCHHHHHHHHHHHHHHHHhC
Confidence 88899999999999999999998764
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-66 Score=529.40 Aligned_cols=426 Identities=72% Similarity=1.206 Sum_probs=379.6
Q ss_pred CchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 128 (474)
.+++|+++++++++++|+|+++++|.|..++..|+++++|+|+++||.||++||||.++++++++||+||+|++|+.+++
T Consensus 2 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~ 81 (427)
T 3fq8_A 2 KTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAM 81 (427)
T ss_dssp CCHHHHHHHHHHTTTSGGGSSSGGGGCTTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhhcCCCcccccccccccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHH
Confidence 46789999999999999999999998877777799999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCcc
Q 011959 129 KKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (474)
Q Consensus 129 ~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (474)
+++..++++++...+|++++++.+++.++++|+|||+||++.|+++++.++++++||+++++|||++..++...+.+...
T Consensus 82 ~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 161 (427)
T 3fq8_A 82 EKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVAT 161 (427)
T ss_dssp TTCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHH
T ss_pred HhCCCcCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccc
Confidence 88766677899999999999999987899999999999999999999999999999999999999998887776665443
Q ss_pred CCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011959 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (474)
Q Consensus 209 ~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (474)
...|...+++.....+++.+|++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv 241 (427)
T 3fq8_A 162 LGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 241 (427)
T ss_dssp HTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred cCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 33455555554444568899999999999999887778999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCC
Q 011959 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (474)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (474)
|+|||+|..+..+++++.||++||||++++|+|+||+++++++++.+.+.+...+.+|+++|+++++++.++|+.+++++
T Consensus 242 ~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~ 321 (427)
T 3fq8_A 242 ITGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPG 321 (427)
T ss_dssp TTBTTTBTTHHHHHTTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTT
T ss_pred ccccccCcchhhHhcCCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 99997777788889999999999999999999999999999999988754455678899999999999999999988889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcc
Q 011959 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 448 (474)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~ 448 (474)
+.++++++++++++.|+++...++.+..+++.|+++++++...+..++.....++......+.+.|+++||++.+++...
T Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~r 401 (427)
T 3fq8_A 322 TYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEA 401 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCCCC
Confidence 99999999999999999988778877888999999999987655454544455666667789999999999999988777
Q ss_pred eEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 449 GFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 449 ~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+++++.+|++++++++++|+++++++
T Consensus 402 ~~~~~~~t~e~i~~~l~~l~~~l~~~ 427 (427)
T 3fq8_A 402 GFTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEeeCcCCHHHHHHHHHHHHHHHHhC
Confidence 88899999999999999999998764
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-70 Score=557.30 Aligned_cols=404 Identities=32% Similarity=0.532 Sum_probs=356.3
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
+++|+++++++++++|+|+++++|.|.+ .|+++++++|+|+||.|||+||||++++++.++||+||+|++|+.+|++
T Consensus 54 ~~~s~~l~~~~~~~~~~g~~~~~~~~~~---~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~ 130 (465)
T 2yky_A 54 NPVSAGHHERARRSMPGGNTRSILFHRP---FPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALA 130 (465)
Confidence 6678999999999999999999988765 3999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccC
Q 011959 130 KGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (474)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (474)
++..++++++...+|+++|++++|+.++++|+|||+||++.|+++||.++++++||+++++|||+++.++ +|
T Consensus 131 ~~~~~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~--sg------ 202 (465)
T 2yky_A 131 VGLNLSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA--SG------ 202 (465)
Confidence 8766677889999999999999987789999999999999999999999999999999999999998877 22
Q ss_pred CCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011959 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (474)
Q Consensus 210 ~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (474)
|...+++. +++.+||||+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|
T Consensus 203 --~~~~g~~~----~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~ 276 (465)
T 2yky_A 203 --HAPTNAPY----HVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVM 276 (465)
Confidence 11223322 467788999999999998655689999999999999999999999999999999999999999999
Q ss_pred cCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcC--CCCcccccCCCCChHHHHHHHHHHHHhcCC
Q 011959 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367 (474)
Q Consensus 290 ~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~--~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 367 (474)
+ ||+|.+++++++|+.||++||||++++|+|+||+++++++++.+.+ .+..++++||++||++|++++++|+.++++
T Consensus 277 ~-~r~g~~~a~~~~gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~ 355 (465)
T 2yky_A 277 T-SRLSGGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTR 355 (465)
Confidence 9 8888888899999999999999999999999999999999999875 233567889999999999999999999888
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc
Q 011959 368 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (474)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 447 (474)
++++++++++++++++|+++..+++++.++++.|+|++++|.+++..++.+.+.++......+.+.|+++||++.|+++.
T Consensus 356 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~ 435 (465)
T 2yky_A 356 QAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMY 435 (465)
Confidence 89999999999999999998877887788999999999998753333443333444455678899999999999987644
Q ss_pred ceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 448 AGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 448 ~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
. +++.+|++||++++++|++++++
T Consensus 436 ~--~s~~~t~edid~~l~~l~~~l~~ 459 (465)
T 2yky_A 436 A--LSLEIADAGRDAFAEALADFIGE 459 (465)
Confidence 3 78899999999999999998865
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-63 Score=505.78 Aligned_cols=422 Identities=54% Similarity=0.919 Sum_probs=357.1
Q ss_pred CchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 128 (474)
.+++|+++++++++++|+|+++++|.|..++..|+++++++|+++||.||++||||.++++++++||+||+|++|+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 81 (424)
T 2e7u_A 2 ERPISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETL 81 (424)
T ss_dssp CCHHHHHHHHHHHHHSGGGSSSGGGGCTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcCCCcCCcceeccccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHH
Confidence 45678999999999999999999998876655699999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCcc
Q 011959 129 KKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (474)
Q Consensus 129 ~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (474)
+++..++++.+...+|++++++++|+.++|+|++||+||++.|+++||.++++++||+++++|||++..++...+.+...
T Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 161 (424)
T 2e7u_A 82 ERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALT 161 (424)
T ss_dssp HTCSCCSSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCC
T ss_pred HhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccc
Confidence 88766678899999999999999977789999999999999999999999999999999999999988777655543221
Q ss_pred CCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011959 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (474)
Q Consensus 209 ~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (474)
...|...+++.....+++.+|++|+++|++.++++++++++|++||+++++|.+.++++|+++|+++ ++||++||+||+
T Consensus 162 ~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv 240 (424)
T 2e7u_A 162 LGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEV 240 (424)
T ss_dssp BCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECT
T ss_pred cCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecC
Confidence 1112223332111235778899999999999975434789999999999999999999999999999 999999999999
Q ss_pred ccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-C
Q 011959 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-P 367 (474)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~ 367 (474)
|+||++|..+..+++++.||++||||++++|+|+||+++++++++.+......++.+||++||++++++.++|+.+++ +
T Consensus 241 ~~g~~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 320 (424)
T 2e7u_A 241 MTGFRLAFGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENP 320 (424)
T ss_dssp TTTTTSSTTHHHHHHTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCT
T ss_pred ccccccchhHHHHHhCCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999977777778889999999999999999999999999999999887533445778999999999999999998877 8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc
Q 011959 368 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (474)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 447 (474)
++.++++++++++++.|+++..++++...+++.|+|+++++......++.....++.....++.+.|+++||++.+++..
T Consensus 321 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 400 (424)
T 2e7u_A 321 GYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNFE 400 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCCC
Confidence 89999999999999999988766777667889999999988542222222222233345567889999999999998766
Q ss_pred ceEEecCCcHHHHHHHHHHHHHHH
Q 011959 448 AGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 448 ~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
.+++++.+|++++++++++|++++
T Consensus 401 ~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 401 AAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp CEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ceEeeccCCHHHHHHHHHHHHHhC
Confidence 778889999999999999998763
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-62 Score=498.49 Aligned_cols=402 Identities=23% Similarity=0.312 Sum_probs=343.0
Q ss_pred CCCchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHH
Q 011959 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (474)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (474)
..+.+++++++++++++++.++.+. .|+++++|+|+|+||.||++||||.++++++++||+||+|++|+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~ 88 (451)
T 3oks_A 18 AIPGPRSQALIDRKGTAVARGVGTT---------MPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRS 88 (451)
T ss_dssp CSSCHHHHHHHHHHHHHBCTTBCCS---------CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhhccCCcCCC---------CCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHH
Confidence 3456789999999999998876532 4899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC---CCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHh
Q 011959 127 TMKKGTSF---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201 (474)
Q Consensus 127 ~~~~~~~~---~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~ 201 (474)
+++++.++ .++++...+|+++|++.+| ..++|+|+|||+||++.|+++++.++++++||+++++|||++..++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~ 168 (451)
T 3oks_A 89 QVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMAL 168 (451)
T ss_dssp HHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHH
T ss_pred HHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHh
Confidence 99886443 3578899999999999997 357999999999999999999999999999999999999999999988
Q ss_pred cCCC-CccCCCCCCCCCCCCCCCceEEccCC------------------CHHHHHHHHhc--CCCCeEEEEEccccCCCC
Q 011959 202 AGSG-VATLGLPDSPGVPKGATYETLTAPFN------------------DVSALENLFEN--NKGEIAAIILEPVVGNSG 260 (474)
Q Consensus 202 ~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~------------------d~~~le~~l~~--~~~~~a~vi~ep~~~~~G 260 (474)
++.. .+...+. .....+..+|++ +++.+++.+++ .++++++||+||+++++|
T Consensus 169 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG 241 (451)
T 3oks_A 169 TAKVMPYKDGFG-------PFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGG 241 (451)
T ss_dssp CCCCTTTTTTCC-------SCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTT
T ss_pred cCCCcccccCCC-------CCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCC
Confidence 7753 2211110 111234445544 24445555543 335799999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCC
Q 011959 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG 339 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~ 339 (474)
.+.++++|+++|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++|||+||+++++++++.+.
T Consensus 242 ~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~--- 318 (451)
T 3oks_A 242 FIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPH--- 318 (451)
T ss_dssp CBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCEEEEEEHHHHTCSC---
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCCcceEEEEECHHHHhhhc---
Confidence 99999999999999999999999999999999 99988899999999999999999999999999999999999887
Q ss_pred CcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccc
Q 011959 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 419 (474)
Q Consensus 340 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~ 419 (474)
+..+.+|+++||++|++++++|+.+++++++++++++++++++.|+++..+++.+..+++.|+|+++++.+.. .
T Consensus 319 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~------~ 392 (451)
T 3oks_A 319 VSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAG------T 392 (451)
T ss_dssp TTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTT------S
T ss_pred CCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCc------c
Confidence 3457889999999999999999988778999999999999999999998888888899999999999986411 1
Q ss_pred cccchHHHHHHHHHHHHCCeEecccCC--cceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 420 KKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
..++......+.+.|+++||++.+++. ..+|+ ++.+|+++|++++++|++++++
T Consensus 393 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 393 TEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp CCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 224555667899999999999998764 45565 6789999999999999999875
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-62 Score=501.00 Aligned_cols=422 Identities=41% Similarity=0.726 Sum_probs=353.1
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
.++++++++++++++++|+.+++|.|.. .+|+++++++|+|+||.||++||||.++++++++||+||+|++|+.++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~ 86 (434)
T 2epj_A 9 GEKSRMLFERTKELFPGGVNSPVRAAVK--PYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALA 86 (434)
T ss_dssp CHHHHHHHHHHTTTSGGGSSSGGGGGCS--SSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhhcCCCcCcccccccC--CCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999888776621 24899999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccC
Q 011959 130 KGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (474)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (474)
++..++++.+...+++++|++++|+.++|+|++||+||++.|+++||.++++++||+++++|||++..++...+......
T Consensus 87 ~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 166 (434)
T 2epj_A 87 RGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHY 166 (434)
T ss_dssp TCSCCSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------
T ss_pred hCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCcccc
Confidence 86556778899999999999998778899999999999999999998899999999999999999887765554322111
Q ss_pred CCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011959 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (474)
Q Consensus 210 ~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (474)
..|...+++.....+++.++++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|
T Consensus 167 ~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~ 246 (434)
T 2epj_A 167 GVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVV 246 (434)
T ss_dssp CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred CCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcch
Confidence 11222233211123477888999999999998544478999999999999999999999999999999999999999999
Q ss_pred cCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCH
Q 011959 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (474)
Q Consensus 290 ~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (474)
+||++|..+..+++++.||++||||++++|+|+||+++++++++.+......++.+||++||++++++.++|+.++++++
T Consensus 247 ~g~~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~ 326 (434)
T 2epj_A 247 TGFRLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPV 326 (434)
T ss_dssp TTTTSSTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCH
T ss_pred hceeCCcchhhHHhCCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCH
Confidence 99977777778889999999999999999999999999999999887433445678999999999999999998877889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcce
Q 011959 370 YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 449 (474)
.++++++++++++.|+++..++++...+++.|+|+++++.+.+..++.....++.....++.+.|+++||++.+++...+
T Consensus 327 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 406 (434)
T 2epj_A 327 YSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLEAV 406 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCCCcE
Confidence 99999999999999998866667766788999999999864222222222222334456789999999999999876677
Q ss_pred EEecCCcHHHHHHHHHHHHHHHhh
Q 011959 450 FTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 450 ~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++++.+|++++++++++|++++++
T Consensus 407 ~~~~~~t~e~i~~~l~~l~~~l~~ 430 (434)
T 2epj_A 407 FTGLPHQGEALEIAVEGLRSSLKT 430 (434)
T ss_dssp ECCTTCSHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHHHHHH
Confidence 888999999999999999998865
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-62 Score=497.24 Aligned_cols=400 Identities=25% Similarity=0.349 Sum_probs=340.8
Q ss_pred CCCchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHH
Q 011959 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (474)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (474)
..+.+++++++++.++++++++.+. .|+++++++|+|+||.||++||||+++++++++||+||+|++|+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~ 91 (453)
T 4ffc_A 21 PLPGPRSGALAERRRAAVSAGVGST---------APVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIAD 91 (453)
T ss_dssp CSSCHHHHHHHHHHHHHBCTTTCCS---------CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhcCCCcCCC---------CCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHH
Confidence 3456788999999999999887532 4899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC---CCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHh
Q 011959 127 TMKKGTSF---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201 (474)
Q Consensus 127 ~~~~~~~~---~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~ 201 (474)
+++++.++ .++.+...+|+++|++.+| ..++|+|+|||+||++.|+++++.++++++||+++++|||++..++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~ 171 (453)
T 4ffc_A 92 QATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMAL 171 (453)
T ss_dssp HHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHH
T ss_pred HHHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhh
Confidence 99886543 3578899999999999997 368999999999999999999999999999999999999999999988
Q ss_pred cCCC-CccCCCCCCCCCCCCCCCceEEccCC----C-------------HHHHHHHHhcCCCCeEEEEEccccCCCCccc
Q 011959 202 AGSG-VATLGLPDSPGVPKGATYETLTAPFN----D-------------VSALENLFENNKGEIAAIILEPVVGNSGFIA 263 (474)
Q Consensus 202 ~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~----d-------------~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~ 263 (474)
++.. .....+. .....+..+|++ | ++.|++.+. ++++++||+||+++++|.+.
T Consensus 172 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~--~~~~aavi~ep~~~~gG~~~ 242 (453)
T 4ffc_A 172 TAKSMPYKSQFG-------PFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIG--AQSLAAIIIEPIQGEGGFIV 242 (453)
T ss_dssp CCCCTTTTTTSC-------SCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTC--GGGEEEEEECSSBTTTTSBC
T ss_pred cCCCcccccCCC-------CCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcC--CCCEEEEEEcCCCCCCCccc
Confidence 7753 2211110 011123344433 3 244444442 34799999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcc
Q 011959 264 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY 342 (474)
Q Consensus 264 ~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~ 342 (474)
++++|+++|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++|+|+||+++++++++.+. +..
T Consensus 243 ~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~---~~~ 319 (453)
T 4ffc_A 243 PAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVY---AGG 319 (453)
T ss_dssp CCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSC---TTS
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCCcCeEEEEECHHHHhhhc---ccC
Confidence 99999999999999999999999999999 99988889999999999999999999999999999999999887 345
Q ss_pred cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccccc
Q 011959 343 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 422 (474)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~ 422 (474)
+.+|+++||++|++++++|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++.+.. ...+
T Consensus 320 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~ 393 (453)
T 4ffc_A 320 LGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPG------TLEP 393 (453)
T ss_dssp SCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTT------SCCB
T ss_pred cCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCc------ccCC
Confidence 7789999999999999999988778999999999999999999998888888899999999999986421 1234
Q ss_pred chHHHHHHHHHHHHCCeEecccCC--cceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 423 ETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 423 ~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+......+.+.|+++||++.+++. ..+|+ ++.+|+++|++++++|++++++
T Consensus 394 ~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 448 (453)
T 4ffc_A 394 DAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRA 448 (453)
T ss_dssp CHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 555677899999999999998764 45555 6889999999999999999875
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-61 Score=496.05 Aligned_cols=407 Identities=20% Similarity=0.243 Sum_probs=331.7
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC
Q 011959 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (474)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 132 (474)
+.++.++.++++..... .++.+.. ..|+++++++|+|+||.|||+||||++|+++++|||+||+|++|+.++++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~~~~--~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~ 88 (472)
T 3hmu_A 12 TAELQALDAAHHLHPFS-ANNALGE--EGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELP 88 (472)
T ss_dssp HHHHHHHHHHHEECTTE-EHHHHHH--HCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhccCCcc-ccccccc--CCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc
Confidence 45666666666543322 1111111 14899999999999999999999999999999999999999999999998853
Q ss_pred ----CCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHh
Q 011959 133 ----SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVK 201 (474)
Q Consensus 133 ----~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~ 201 (474)
.++++++...+|+++|++.+| +.++|+|+|||+||++.|+++++.+ +++++||+++++|||++..++..
T Consensus 89 ~~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~ 168 (472)
T 3hmu_A 89 YYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSAL 168 (472)
T ss_dssp CCCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhc
Confidence 124578899999999999998 5789999999999999999999887 47899999999999999999888
Q ss_pred cCCCCccCCCCCCCCCCCCCCCceEEccC----CC-----------HHHHHHHHhcC-CCCeEEEEEccccCCCCcccCC
Q 011959 202 AGSGVATLGLPDSPGVPKGATYETLTAPF----ND-----------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPK 265 (474)
Q Consensus 202 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~d-----------~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~ 265 (474)
++.......+...+++ ..+..|+ ++ +++|++++++. ++++++||+||+++++|.+.++
T Consensus 169 ~~~~~~~~~~~~~~~~------~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~ 242 (472)
T 3hmu_A 169 GGMAGMHAQSGLIPDV------HHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAP 242 (472)
T ss_dssp SCCHHHHHTTCCCSSE------EEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCC
T ss_pred cCChhhccccCCCCCc------EEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCC
Confidence 7764322111111111 1222222 22 78899988743 3579999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCCCccc
Q 011959 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQ 343 (474)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~ 343 (474)
++||++|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++| +|+|++++++++++.+. ...+.+
T Consensus 243 ~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~-~~~~~~ 321 (472)
T 3hmu_A 243 DSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIG-KDEFNH 321 (472)
T ss_dssp TTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHT-TSCBCC
T ss_pred HHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcc-cCCccc
Confidence 999999999999999999999999999 999888899999999999999999976 89999999999999984 235568
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccccc
Q 011959 344 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN-KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 422 (474)
Q Consensus 344 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~ 422 (474)
++||++||++|+|++++|+.+++++++++++ ++++++++.|+++ .+++.+.++++.|+|+++++..+.... .+ ..+
T Consensus 322 ~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~v~~vr~~G~~~~i~~~~~~~~~-~~-~~~ 398 (472)
T 3hmu_A 322 GYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEAL-TDHPLVGEAKIVGMMASIALTPNKASR-AK-FAS 398 (472)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGG-GGSTTEEEEEEETTEEEEEECSCGGGT-CC-BSS
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEecCceEEEEEecCcccc-cc-ccc
Confidence 8899999999999999999987789999999 9999999999765 457888899999999999986431100 00 001
Q ss_pred c-hHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 423 E-TTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 423 ~-~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+ ......+.+.|+++||++.+.+ ..+|++ +++|+++|++++++|++++++
T Consensus 399 ~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 451 (472)
T 3hmu_A 399 EPGTIGYICRERCFANNLIMRHVG-DRMIISPPLVITPAEIDEMFVRIRKSLDE 451 (472)
T ss_dssp CTTHHHHHHHHHHHHTTBCCEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 3345678899999999999887 677775 899999999999999998864
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-61 Score=493.31 Aligned_cols=407 Identities=18% Similarity=0.241 Sum_probs=332.3
Q ss_pred HHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC
Q 011959 54 EEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS 133 (474)
Q Consensus 54 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~ 133 (474)
..+.++.++++....+ .++.+. ...|+++++++|+|+||.||++||||++|++++++||+||+|++|+.+++++...
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~--~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~ 88 (476)
T 3i5t_A 12 GAVGAAMRDHILLPAQ-EMAKLG--KSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPY 88 (476)
T ss_dssp -CHHHHHHHHBCCTTE-EGGGTT--TCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCC
T ss_pred hHHHhhcccccccCcc-cccccc--cCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccC
Confidence 3455555555443221 222221 1248999999999999999999999999999999999999999999999988432
Q ss_pred ---CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcC
Q 011959 134 ---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAG 203 (474)
Q Consensus 134 ---~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g 203 (474)
+.++++...+|+++|++++| +.++|+|+|||+||++.|+++++.+ +++++||+++++|||++..++..++
T Consensus 89 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~ 168 (476)
T 3i5t_A 89 ASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTG 168 (476)
T ss_dssp CCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCC
T ss_pred cccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccC
Confidence 24678999999999999998 6889999999999999999999988 8899999999999999999998887
Q ss_pred CCCccCCC-CCCCCCCCCCCCceEEccC-----CC---------HHHHHHHHhcC-CCCeEEEEEccccCCCCcccCCHH
Q 011959 204 SGVATLGL-PDSPGVPKGATYETLTAPF-----ND---------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPD 267 (474)
Q Consensus 204 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----~d---------~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~ 267 (474)
.......+ +...++ ..+.+|+ ++ +++||+++++. ++++++||+||+++++|.+.++++
T Consensus 169 ~~~~~~~~~~~~~~~------~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~ 242 (476)
T 3i5t_A 169 RTGNWPNFDIAQDRI------SFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAG 242 (476)
T ss_dssp CGGGCTTSCCCCTTE------EEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTT
T ss_pred ChhhccccCCCCCCc------EEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHH
Confidence 65433211 111111 1223333 22 78999988753 357999999999999999999999
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCc-ccCCCcccc-ccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC----CC
Q 011959 268 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE-YFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GP 340 (474)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~-~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~----~~ 340 (474)
||++|+++|++||++||+||||+|| |+|.+++.+ ++++.||++||||++++| +|+|++++++++++.+.+. +.
T Consensus 243 ~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~ 322 (476)
T 3i5t_A 243 YHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSW 322 (476)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCE
T ss_pred HHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCccccc
Confidence 9999999999999999999999999 999888888 999999999999999999 8999999999999998742 22
Q ss_pred cccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccc
Q 011959 341 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (474)
Q Consensus 341 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (474)
+.+++||++||++|+|++++|+.+++++++++++++++++++.|+++ .+++.+.++++.|+|+++++.+...... ..
T Consensus 323 ~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~v~~v~~~G~~~~i~~~~~~~~~~--~~ 399 (476)
T 3i5t_A 323 FTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASL-RDLPGVAETRSVGLVGCVQCLLDPTRAD--GT 399 (476)
T ss_dssp ECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCC-------CC
T ss_pred ccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEecCceeEEEEecCccccc--cc
Confidence 46778999999999999999999887899999999999999999965 4678888999999999999865321000 00
Q ss_pred ccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.++......+.+.|+++||++.+.+ ..+|++ +++|+++|++++++|++++++
T Consensus 400 ~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~ 453 (476)
T 3i5t_A 400 AEDKAFTLKIDERCFELGLIVRPLG-DLCVISPPLIISRAQIDEMVAIMRQAITE 453 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHCCCEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 0112235678899999999999876 677875 899999999999999999864
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-60 Score=482.69 Aligned_cols=413 Identities=21% Similarity=0.275 Sum_probs=340.1
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHh
Q 011959 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (474)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 130 (474)
.+++++.++.++++.... +.+.. ..|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~----~~~~~--~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~ 80 (452)
T 3n5m_A 7 KQTDELLAKDEQYVWHGM----RPFSP--NSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQT 80 (452)
T ss_dssp HHHHHHHHHHHHHBCCTT----SCSCG--GGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTT
T ss_pred ccHHHHHHHhhhhccccc----ccccc--CCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHh
Confidence 346778888888776532 11211 248999999999999999999999999999999999999999999999988
Q ss_pred cCC--CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh---c---CCcEEEEEeCCCCCCchhHHHhc
Q 011959 131 GTS--FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF---T---GRERIIKFEGCYHGHADPFLVKA 202 (474)
Q Consensus 131 ~~~--~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~---~---~~~~ii~~~~~yhg~~~~~~~~~ 202 (474)
+.. .+++++...+|+++|+++++....|+|++||+||++.|+++++.+ + ++++||+++++|||++..++..+
T Consensus 81 ~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~ 160 (452)
T 3n5m_A 81 LSYFPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAAT 160 (452)
T ss_dssp CCCCCTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSC
T ss_pred cCCcccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcC
Confidence 532 346788999999999999873323999999999999999998866 6 78999999999999999888887
Q ss_pred CCCCccCCC-CCCCCCCCCCCCceEEccCCC---------HHHHHHHHh-cCCCCeEEEEEccc-cCCCCcccCCHHHHH
Q 011959 203 GSGVATLGL-PDSPGVPKGATYETLTAPFND---------VSALENLFE-NNKGEIAAIILEPV-VGNSGFIAPKPDFLN 270 (474)
Q Consensus 203 g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d---------~~~le~~l~-~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~ 270 (474)
+.......+ |...++......+.+.+++|| +++||++++ .+++++++||+||+ +| +|.+.|+++|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~ 239 (452)
T 3n5m_A 161 GQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMK 239 (452)
T ss_dssp CCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHH
T ss_pred CchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHH
Confidence 765432211 222222111122233456677 999999997 44457999999999 89 999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcC---CCCccccc
Q 011959 271 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP---AGPMYQAG 345 (474)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~---~~~~~~~~ 345 (474)
+|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++| +|+|++++++++++.+.. .+.+.+++
T Consensus 240 ~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~ 319 (452)
T 3n5m_A 240 AVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHIN 319 (452)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCC
T ss_pred HHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccC
Confidence 9999999999999999999999 999888899999999999999999999 999999999999999864 34556788
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchH
Q 011959 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (474)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (474)
|+++||+++++++++|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++..+.... . .-+..
T Consensus 320 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~-~---~~~~~ 395 (452)
T 3n5m_A 320 TFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETK-E---PIDND 395 (452)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTT-E---ECCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCccc-C---CCCHH
Confidence 9999999999999999988778999999999999999999988888888899999999999986432110 0 00123
Q ss_pred HHHHHHHHHHHCCeEecccC------CcceEE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 426 KFARFYRGMLEEGVYFAPSQ------FEAGFT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 426 ~~~~~~~~l~~~Gv~v~~~~------~~~~~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
....+.+.|+++||++.+.+ ...+|+ ++.+|+++|++++++|+++++++
T Consensus 396 ~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 452 (452)
T 3n5m_A 396 KIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI 452 (452)
T ss_dssp HHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhC
Confidence 44678899999999999876 356777 58999999999999999998764
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-59 Score=480.27 Aligned_cols=395 Identities=24% Similarity=0.346 Sum_probs=328.7
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEc-CCC--EEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDI-DGN--EYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~-dG~--~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
++++.++.++++...... +......|+++++++|+|+||. ||| +||||+++|+++++||+||+|++|+.++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~ 105 (457)
T 3tfu_A 30 PEQIIAVDGAHLWHPYSS----IGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLR 105 (457)
T ss_dssp HHHHHHHHHHHBCCTTCC----SSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCccccc----ccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHH
Confidence 456777777776543321 1001124899999999999999 999 999999999999999999999999999998
Q ss_pred hcCC---CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHH
Q 011959 130 KGTS---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFL 199 (474)
Q Consensus 130 ~~~~---~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~ 199 (474)
+... ..++++...+|+++|++++| +.++|+|+|||+||++.|+++++.+ +++++||.++++|||.+..++
T Consensus 106 ~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~ 185 (457)
T 3tfu_A 106 VMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAM 185 (457)
T ss_dssp HCSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHH
T ss_pred hccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhh
Confidence 8533 23578889999999999998 6789999999999999999999887 788999999999999999888
Q ss_pred HhcCC-CCccCCC-CCCCCCCCCCCCceEEcc-------CCCHHHHHHHHhcCCCCeEEEEEcc-ccCCCCcccCCHHHH
Q 011959 200 VKAGS-GVATLGL-PDSPGVPKGATYETLTAP-------FNDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFL 269 (474)
Q Consensus 200 ~~~g~-~~~~~~~-~~~~g~~~~~~~~~~~~~-------~~d~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l 269 (474)
..++. ......+ +...+ ...++ ++|+++|+++++++++++++||+|| ++|++|.+.++++|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~--------~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l 257 (457)
T 3tfu_A 186 SICDPHGGMHSLWTDVLAA--------QVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYL 257 (457)
T ss_dssp TTSCCC----------CCC--------CEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHH
T ss_pred cccCCcccccccccCCCCC--------ceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHH
Confidence 77542 1111101 11111 22222 2589999999986556899999999 999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhc--CCCCccccc
Q 011959 270 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVA--PAGPMYQAG 345 (474)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~--~~~~~~~~~ 345 (474)
++|+++|++||++||+||||+|| |+|.+++.+++++.||++||||+++|| +|+||+++++++++.+. +.+.+.+++
T Consensus 258 ~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~ 337 (457)
T 3tfu_A 258 HDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGP 337 (457)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCC
T ss_pred HHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEec
Confidence 99999999999999999999999 999989999999999999999999988 69999999999999985 223456888
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchH
Q 011959 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (474)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (474)
||++||++|++++++|+.++++++.++++++++++++.|+++. +++.+.++++.|+|+++++.+.. +
T Consensus 338 t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~l~~~~----------~-- 404 (457)
T 3tfu_A 338 TFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALPAVTDVRVCGAIGVIECDRPV----------D-- 404 (457)
T ss_dssp TTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GSTTEEEEEECSSCEEEEESSCC----------C--
T ss_pred CCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCCCeeeeecCCeEEEEEECCcc----------c--
Confidence 9999999999999999999888999999999999999998865 56777889999999999985421 1
Q ss_pred HHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 426 KFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 426 ~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
..++.+.|+++||++.+.+ ..+|+ ++++|++++++++++|+++++++
T Consensus 405 -~~~~~~~l~~~Gv~v~~~~-~~lRi~p~~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 405 -LAVATPAALDRGVWLRPFR-NLVYAMPPYICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp -HHHHHHHHHHTTEECCCBT-TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHCCeEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999865 45676 47899999999999999998763
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-59 Score=479.39 Aligned_cols=409 Identities=18% Similarity=0.217 Sum_probs=333.1
Q ss_pred HHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---
Q 011959 56 AFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--- 132 (474)
Q Consensus 56 ~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--- 132 (474)
+.++.++++..... .++.+...+.+|+++++++|+|+||.||++||||++|++++++||+||+|++|+.++++++.
T Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~ 87 (460)
T 3gju_A 9 LNAWDRDHFFHPST-HMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYH 87 (460)
T ss_dssp HHHHHHHHCCCTTS-CHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHhhhcccccCcc-ccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 44444455433322 23333333334699999999999999999999999999999999999999999999998743
Q ss_pred -CCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCC
Q 011959 133 -SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGS 204 (474)
Q Consensus 133 -~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~ 204 (474)
.++++++...+|+++|+++++ +.++|+|+|||+||++.|+++++.+ +++++||+++++|||++..++..++.
T Consensus 88 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~ 167 (460)
T 3gju_A 88 AYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGL 167 (460)
T ss_dssp CCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCC
T ss_pred cccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCC
Confidence 234678899999999999987 6789999999999999999998876 67899999999999999999988876
Q ss_pred CCccCCC-CCCCCCCCCCCCceEEccC----CC------------HHHHHHHHhc-CCCCeEEEEEccccCCCCcccCCH
Q 011959 205 GVATLGL-PDSPGVPKGATYETLTAPF----ND------------VSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 205 ~~~~~~~-~~~~g~~~~~~~~~~~~~~----~d------------~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
......+ +...++ ..+.+|+ +| +++|++++++ .++++++||+||+++++|.+.+++
T Consensus 168 ~~~~~~~~~~~~~~------~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~ 241 (460)
T 3gju_A 168 DLFHNAFDLPRAPV------LHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPA 241 (460)
T ss_dssp GGGTTTTTCSCTTE------EEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCT
T ss_pred cccccccCCCCCCC------EEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCH
Confidence 5432211 111111 1122222 43 6899998874 235799999999999999999999
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC----CC
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GP 340 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~----~~ 340 (474)
+||++|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++| +|+||+++++++++.+... ..
T Consensus 242 ~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~ 321 (460)
T 3gju_A 242 GYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGS 321 (460)
T ss_dssp THHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccc
Confidence 99999999999999999999999999 999888889999999999999999988 7999999999999988521 24
Q ss_pred cccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccc
Q 011959 341 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (474)
Q Consensus 341 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (474)
..+.+||++||++|++++++|+.+++++++++++++.+++++.|.+.+.+++.+.++++.|+|+++++..+.... ...
T Consensus 322 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~ 399 (460)
T 3gju_A 322 LGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDR--VFF 399 (460)
T ss_dssp CSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTT--BCC
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCcccc--ccc
Confidence 567889999999999999999998778999999999999999998888888888899999999999986432110 001
Q ss_pred ccchHHHHHHHHHHHHCCeEecccCC-cceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 421 KSETTKFARFYRGMLEEGVYFAPSQF-EAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.++......+.+.|+++||++.+.+. ..+|++ +++|+++|++++++|++++++
T Consensus 400 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 455 (460)
T 3gju_A 400 DASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKS 455 (460)
T ss_dssp CGGGCHHHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 12233456789999999999998763 567775 899999999999999999865
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-60 Score=481.79 Aligned_cols=415 Identities=31% Similarity=0.490 Sum_probs=323.7
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
+++++++++++++++|+|+++++|.|.+ +|+++++++|+++||.||++||||.++++++++||+||+|++|+.++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~ 87 (453)
T 2cy8_A 11 TEGSVFWAQRARSVMPDGVTADTRAFDP---HGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALS 87 (453)
T ss_dssp CHHHHHHHHHHHHHSCCC------CCSS---CCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHhhcCCCCCccccccCC---CCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHH
Confidence 5678999999999999999888777653 4899999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccC
Q 011959 130 KGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (474)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (474)
++..++++.+++.++++++++++++.++|+|++||+||++.|+++||.++++++||+++++|||++...+...+...
T Consensus 88 ~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~--- 164 (453)
T 2cy8_A 88 HGVQYAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHF--- 164 (453)
T ss_dssp TTCSSCSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC--------------------
T ss_pred hCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCcc---
Confidence 86666788999999999999998778899999999999999999988899999999999999999887765444310
Q ss_pred CCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011959 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (474)
Q Consensus 210 ~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (474)
..+...+++.....+++.++++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|
T Consensus 165 ~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~ 244 (453)
T 2cy8_A 165 DGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVI 244 (453)
T ss_dssp -----------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCcCCCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCc
Confidence 00111233222233577888999999999998544578999999999889999999999999999999999999999999
Q ss_pred cCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCC--CCcccccCCCCChHHHHHHHHHHHH-hcC
Q 011959 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKR-LKE 366 (474)
Q Consensus 290 ~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~--~~~~~~~t~~~~~~~~aaa~aal~~-~~~ 366 (474)
+||+.|..+..+++++.||++||||++++|+|+||+++++++++.+... ....+.+|+++||++++++.++|+. + .
T Consensus 245 ~g~~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~ 323 (453)
T 2cy8_A 245 SGFRVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-E 323 (453)
T ss_dssp TTTTTCTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-H
T ss_pred cccccCchhhhHHhCCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-h
Confidence 9997677777788899999999999999999999999999999988641 2234667999999999999999998 7 6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEec-----C-CCcCcccccccchHHHHHHHHHHHHCCeE
Q 011959 367 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE-----G-PVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (474)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (474)
+++.++++++++++++.|+++..++++...+++.|+|+++++.. . ...++.....++.....++.+.|+++||+
T Consensus 324 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~ 403 (453)
T 2cy8_A 324 DDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVD 403 (453)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeE
Confidence 78999999999999999998866677767788999999999853 1 00011111112233456788999999999
Q ss_pred ecccCCcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 441 FAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 441 v~~~~~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+.+.+ .+++++.+|++++++++++|++++++
T Consensus 404 v~~~~--~~~l~~~~t~~~i~~~l~~l~~~l~~ 434 (453)
T 2cy8_A 404 IGGRG--SVFLSAQHEREHVEHLVTTFDRVLDR 434 (453)
T ss_dssp CBTTT--EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCC--CEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 97653 36778999999999999999998864
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-59 Score=478.29 Aligned_cols=403 Identities=23% Similarity=0.298 Sum_probs=314.3
Q ss_pred HHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC-
Q 011959 55 EAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS- 133 (474)
Q Consensus 55 ~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~- 133 (474)
++.++.++++..... .++.+ ...|+++++|+|+|+||.||++||||.++++++++||+||+|++|+.++++++..
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~~---~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~ 79 (448)
T 3dod_A 4 DLIEKSKKHLWLPFT-QMKDY---DENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHS 79 (448)
T ss_dssp HHHHHHHHHBCCTTC-CHHHH---HHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCC
T ss_pred HHHHhhhhccccccc-ccccc---cCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCc
Confidence 355566666544322 22222 2248999999999999999999999999999999999999999999999988532
Q ss_pred --CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh---cC---CcEEEEEeCCCCCCchhHHHhcCC
Q 011959 134 --FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---TG---RERIIKFEGCYHGHADPFLVKAGS 204 (474)
Q Consensus 134 --~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~---~~---~~~ii~~~~~yhg~~~~~~~~~g~ 204 (474)
.+++++...+|+++|++++| +.++|+|+|||+||++.|+++++.+ ++ +++||+++++|||++..++..++.
T Consensus 80 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~ 159 (448)
T 3dod_A 80 TLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSI 159 (448)
T ss_dssp CCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC----------------
T ss_pred cccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCC
Confidence 34677889999999999998 6789999999999999999999887 77 899999999999999888877765
Q ss_pred CCccCCC-CCCCCCCCCCCCceEEccC----------------CCHHHHHHHHhcCCCCeEEEEEcccc-CCCCcccCCH
Q 011959 205 GVATLGL-PDSPGVPKGATYETLTAPF----------------NDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKP 266 (474)
Q Consensus 205 ~~~~~~~-~~~~g~~~~~~~~~~~~~~----------------~d~~~le~~l~~~~~~~a~vi~ep~~-~~~G~i~~~~ 266 (474)
......+ |...+ +..+|+ +|+++||++++++++++++||+||++ +++|.+.+++
T Consensus 160 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~ 231 (448)
T 3dod_A 160 ELFHHVYGPLMFE--------SYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPE 231 (448)
T ss_dssp ---------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCT
T ss_pred ccccccccCCCCC--------ceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCH
Confidence 4322111 11111 222222 35899999998544579999999999 9999999999
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcC----CCC
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP----AGP 340 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~----~~~ 340 (474)
+|+++|+++|++||++||+||||+|| ++|.+++.+++++.||++||||++++| +|+|++++++++++.+.. ...
T Consensus 232 ~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~ 311 (448)
T 3dod_A 232 GYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKT 311 (448)
T ss_dssp THHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCC
T ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCc
Confidence 99999999999999999999999999 999888889999999999999999999 599999999999999873 122
Q ss_pred cccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccc
Q 011959 341 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (474)
Q Consensus 341 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (474)
..+++|+++||+++++++++|+.++++++.++++++++++++.|++ +..++.+..+++.|.++++++..+..... . .
T Consensus 312 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~-~ 388 (448)
T 3dod_A 312 FFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKE-P-Y 388 (448)
T ss_dssp CCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTB-C-C
T ss_pred ccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCccccc-c-c
Confidence 5677899999999999999999887789999999999999999998 66778888899999999999864321000 0 0
Q ss_pred ccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.........+++.|+++||++.|.+ ..+|+ ++.+|+++|++++++|++++++
T Consensus 389 ~~~~~~~~~~~~~l~~~Gv~~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 442 (448)
T 3dod_A 389 PADRRIGYKVSLKMRELGMLTRPLG-DVIAFLPPLASTAEELSEMVAIMKQAIHE 442 (448)
T ss_dssp CGGGCHHHHHHHHHHHTTEECCEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHCCcEEeccC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 0011123578899999999999876 66777 7899999999999999999865
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-58 Score=474.77 Aligned_cols=384 Identities=20% Similarity=0.277 Sum_probs=320.6
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHhhCC-CC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAPCLLENVLAEMVISAVP-SI 155 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~~~~~~~~~la~~l~~~~~-~~ 155 (474)
.|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.++++++. .++++++...+|+++|++++| +.
T Consensus 32 ~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~ 111 (459)
T 4a6r_A 32 GARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGF 111 (459)
T ss_dssp --CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTC
T ss_pred CCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC
Confidence 4899999999999999999999999999999999999999999999998743 224678999999999999998 58
Q ss_pred CeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEc
Q 011959 156 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 228 (474)
Q Consensus 156 ~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~ 228 (474)
++|+|+|||+||++.|+++++.+ +++++||+++++|||++..++..++.......+ +...+ ...+.+
T Consensus 112 ~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 185 (459)
T 4a6r_A 112 DRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPG------MAHIEQ 185 (459)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSS------EEEECC
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCC------CEEeCC
Confidence 89999999999999999998876 478999999999999999999888765432111 11111 112222
Q ss_pred cC----C---C--------HHHHHHHHhcC-CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011959 229 PF----N---D--------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (474)
Q Consensus 229 ~~----~---d--------~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (474)
|+ + | +++|++++++. ++++++|++||+++++|.+.++++||++|+++|++||++||+||||+||
T Consensus 186 p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 265 (459)
T 4a6r_A 186 PWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGF 265 (459)
T ss_dssp CCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 22 2 2 78899988742 3578999999999999999999999999999999999999999999999
Q ss_pred -ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 293 -RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 293 -r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
|+|.+++.+++++.||++||||++++| +|+|++++++++++.+.......+++||++||++|++++++|+.++++++.
T Consensus 266 gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 345 (459)
T 4a6r_A 266 GRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIV 345 (459)
T ss_dssp TTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred CcccccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHH
Confidence 999888889999999999999999976 899999999999998863224557789999999999999999988778999
Q ss_pred HHHH-HHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcce
Q 011959 371 EYLN-KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (474)
Q Consensus 371 ~~~~-~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 449 (474)
++++ ++++++++.|.+.+.+++.+.++++.|+|+++++..+.... ....++......+.+.|+++||++.+.+ ..+
T Consensus 346 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~i 422 (459)
T 4a6r_A 346 QRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKR--ELFPDFGEIGTLCRDIFFRNNLIMRACG-DHI 422 (459)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTT--BCCSSTTHHHHHHHHHHHHTTEECEEET-TEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCcccc--ccccchHHHHHHHHHHHHHCCeEEecCC-CEE
Confidence 9999 99999999995555667888899999999999986432110 0111334456788999999999999976 677
Q ss_pred EEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 450 FTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 450 ~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
|++ +++|++++++++++|++++++
T Consensus 423 Ri~~~~~~t~e~i~~~l~~l~~~l~~ 448 (459)
T 4a6r_A 423 VSAPPLVMTRAEVDEMLAVAERCLEE 448 (459)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 775 899999999999999998864
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-60 Score=509.25 Aligned_cols=411 Identities=18% Similarity=0.262 Sum_probs=320.7
Q ss_pred HHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccC--EEEEcCCC----EEEeccCChhhccCCCC-CHHHHHHHHHH
Q 011959 55 EAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGS--HMWDIDGN----EYIDYVGSWGPAIIGHA-DDQVLAALGET 127 (474)
Q Consensus 55 ~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~--~~~d~dG~----~~iD~~~~~~~~~lG~~-~p~v~~a~~~~ 127 (474)
++.++.++++....+ .++.+.. ..|++|++|+|. |+||.||| +|||++++||++++||+ ||+|++|+++|
T Consensus 333 ~~~~~~~~~~whp~t-~~~~~~~--~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q 409 (831)
T 4a0g_A 333 GMAKLAGEVFWWPFT-QHKLVHQ--ETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYT 409 (831)
T ss_dssp HHHHHHHHHBCCTTC-CGGGCCG--GGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccCCcc-CcccccC--CCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHH
Confidence 344555566554332 2222222 138899999995 99999999 99999999999999999 99999999999
Q ss_pred HHhcCCC---CCCCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHh-Hhhc--------------CCcEEEEE
Q 011959 128 MKKGTSF---GAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLA-RAFT--------------GRERIIKF 187 (474)
Q Consensus 128 ~~~~~~~---~~~~~~~~~la~~l~~~~~-~-~~~v~~~~sGseA~~~al~~a-r~~~--------------~~~~ii~~ 187 (474)
+++..+. ++.++...+|+++|++..| + .++|+|+|||+||||.|||+| |.++ +|.+||.+
T Consensus 410 ~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~ 489 (831)
T 4a0g_A 410 AARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIAL 489 (831)
T ss_dssp HHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEE
T ss_pred HhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEe
Confidence 9985332 3568889999999999998 4 689999999999999999999 5553 46799999
Q ss_pred eCCCCCCchhHHHhcCCCCccCC--CCCCCCC------CCC---CCCceEEcc------------CCCH-----------
Q 011959 188 EGCYHGHADPFLVKAGSGVATLG--LPDSPGV------PKG---ATYETLTAP------------FNDV----------- 233 (474)
Q Consensus 188 ~~~yhg~~~~~~~~~g~~~~~~~--~~~~~g~------~~~---~~~~~~~~~------------~~d~----------- 233 (474)
+++|||.+.++++.++...+... .+...+. |.. .....+.+| |+|.
T Consensus 490 ~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (831)
T 4a0g_A 490 RGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDAS 569 (831)
T ss_dssp TTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGS
T ss_pred cCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccch
Confidence 99999999999999886543220 0111010 000 000011222 3332
Q ss_pred -------HHHHHHHh-----cCCCCeEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc
Q 011959 234 -------SALENLFE-----NNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 299 (474)
Q Consensus 234 -------~~le~~l~-----~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~ 299 (474)
+.|++.|+ .+++++++||+||+ ++++|.+.++++||++|+++|++||++||+||||+|| |+|.+|+
T Consensus 570 ~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa 649 (831)
T 4a0g_A 570 TLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETT 649 (831)
T ss_dssp HHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSST
T ss_pred hhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchh
Confidence 56777776 34568999999997 9999999999999999999999999999999999999 9999999
Q ss_pred ccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCC---CcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHH
Q 011959 300 QEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG---PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 375 (474)
Q Consensus 300 ~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~---~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 375 (474)
++++|+.||++||||++++| +|+|++++++++++.+.... .+.|++||++||++|++++++|+.++++++.+++++
T Consensus 650 ~e~~gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~ 729 (831)
T 4a0g_A 650 TELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITS 729 (831)
T ss_dssp HHHHSSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCT
T ss_pred hHhcCCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999998 79999999999999987432 356889999999999999999999988778888777
Q ss_pred HHHHHHH----HHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE
Q 011959 376 ITGELTQ----GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT 451 (474)
Q Consensus 376 ~~~~l~~----~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~ 451 (474)
+++++++ .+.+.+.+++.+.++++.|+|+++++..+... ..++......+.+.|+++||++.|.+ +.+++
T Consensus 730 ~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gv~v~p~g-~~lrl 803 (831)
T 4a0g_A 730 QGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASN-----SGYASLYAKSLLIMLREDGIFTRPLG-NVIYL 803 (831)
T ss_dssp TSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC--------------CHHHHHHHHHHHHTTEECCCBT-TEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccc-----cccchHHHHHHHHHHHHCCcEEEecC-CEEEE
Confidence 6666543 45455567888999999999999999753211 01223445678999999999999876 45665
Q ss_pred --ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 452 --SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 452 --~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
++.+|+++|++++++|+++++++
T Consensus 804 ~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 804 MCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999998764
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-57 Score=456.64 Aligned_cols=389 Identities=21% Similarity=0.321 Sum_probs=313.9
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
+.++++++++.++++.++.. ..|+++++++|+|+||.||++||||.+|++++++||+||+|++|+.++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~ 95 (433)
T 1z7d_A 26 LKTPEDYINNELKYGAHNYD----------PIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAK 95 (433)
T ss_dssp -CCHHHHHHHHHHHBCCCCC----------CEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHhcccccC----------CCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHH
Confidence 34577888888887755321 13889999999999999999999999999889999999999999999998
Q ss_pred hcCC--CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh--------cCCcEEEEEeCCCCCCchhHH
Q 011959 130 KGTS--FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFL 199 (474)
Q Consensus 130 ~~~~--~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~ 199 (474)
+... ..++.+...+|+++|++++ +.++|+|++||+||++.|+++++.+ +++++||+++++|||++..++
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~ 174 (433)
T 1z7d_A 96 NLTICSRAFFSVPLGICERYLTNLL-GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCI 174 (433)
T ss_dssp TCSCCCTTSEEHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------
T ss_pred hCCCccCCcCCHHHHHHHHHHHhhc-CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhh
Confidence 7532 2356788899999999988 5789999999999999999998754 256899999999999988777
Q ss_pred HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh
Q 011959 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279 (474)
Q Consensus 200 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~ 279 (474)
..++.......+ .+ ....+..+|++|+++|+++++. +++++|++||+++++|.+.++++++++|+++|++|
T Consensus 175 ~~~g~~~~~~~~--~p-----~~~~v~~~~~~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 245 (433)
T 1z7d_A 175 SASTTKKCTSNF--GP-----FAPQFSKVPYDDLEALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY 245 (433)
T ss_dssp ------------------------CEEEECTTCHHHHHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred cccCCccccccC--CC-----CCCCeEEeCCCCHHHHHHHhCC--CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc
Confidence 665532211100 00 1124677889999999999962 47899999999999999988899999999999999
Q ss_pred CCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHH
Q 011959 280 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 357 (474)
Q Consensus 280 g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa 357 (474)
|++||+||+|+|| ++|.+++++++++.||++||||++++| +|+||+++++++++.+.. ..+.+||++||++++++
T Consensus 246 g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa 322 (433)
T 1z7d_A 246 NVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP---GEHGSTYGGNPLAASIC 322 (433)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCT---TCCCCTTTTCHHHHHHH
T ss_pred CCEEEEecCccCCCcCCcchhhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhcc---ccccccCCCCHHHHHHH
Confidence 9999999999999 989888888999999999999999999 899999999999988763 34678999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC
Q 011959 358 IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (474)
Q Consensus 358 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (474)
.++|+.++++++.++++++++++++.|+++...++.+..+++.|+|+++++.... ....++.+.|+++
T Consensus 323 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~------------~~~~~~~~~l~~~ 390 (433)
T 1z7d_A 323 VEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL------------VNVLDICLKLKEN 390 (433)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT------------CCHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh------------hHHHHHHHHHHHC
Confidence 9999988777899999999999999999876567777788999999999885320 0125788899999
Q ss_pred CeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 438 GVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 438 Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
||++.+.+...+|+ ++.+|++++++++++|++++++
T Consensus 391 Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 428 (433)
T 1z7d_A 391 GLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKF 428 (433)
T ss_dssp TEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 99999876567777 5688999999999999998864
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-56 Score=454.93 Aligned_cols=388 Identities=23% Similarity=0.349 Sum_probs=324.4
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
..++++++++.++++..... ..|+++++++|+|+||.||++||||.+|+++.++||+||+|++|+.++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~ 106 (439)
T 2oat_A 37 PPTSDDIFEREYKYGAHNYH----------PLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVD 106 (439)
T ss_dssp CCCHHHHHHHHHHHBCCCCC----------CCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcccccC----------CCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHH
Confidence 44577888888777654321 14889999999999999999999999999989999999999999999998
Q ss_pred hcCCC--CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh--------cCCcEEEEEeCCCCCCchhHH
Q 011959 130 KGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFL 199 (474)
Q Consensus 130 ~~~~~--~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~ 199 (474)
+...+ .++.+...+|++++++++ +.++++|++||+||++.|+++++.+ .++++||+++++|||++..++
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~ 185 (439)
T 2oat_A 107 KLTLTSRAFYNNVLGEYEEYITKLF-NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAI 185 (439)
T ss_dssp TCSCCCTTSEESSHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHH
T ss_pred hcCcccCccCCHHHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHh
Confidence 75322 245667789999999888 5789999999999999999998754 245899999999999988887
Q ss_pred HhcCCCCccCCC-CCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Q 011959 200 VKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 278 (474)
Q Consensus 200 ~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~ 278 (474)
..++.......+ |. ..++..+|++|+++|++.++. +++++|++||+++++|.+.++++++++|+++|++
T Consensus 186 ~~~g~~~~~~~~~p~--------~~~v~~~~~~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~ 255 (439)
T 2oat_A 186 SSSTDPTSYDGFGPF--------MPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR 255 (439)
T ss_dssp TTCCCHHHHTTSCSC--------CTTEEEECSSCHHHHHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred hcCCChhcccCCCCC--------CCCeEEeCCCCHHHHHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 766532211111 11 124678889999999999962 4789999999999999999899999999999999
Q ss_pred hCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHH
Q 011959 279 NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 356 (474)
Q Consensus 279 ~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aa 356 (474)
||++||+||+|+|| ++|.+++++++++.||++||||++++| +|+||+++++++++.+. ...+.+||++||+++++
T Consensus 256 ~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~---~~~~~~t~~~~~~~~aa 332 (439)
T 2oat_A 256 HQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIK---PGEHGSTYGGNPLGCRV 332 (439)
T ss_dssp TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSC---TTSSCCSSTTCHHHHHH
T ss_pred cCCEEEEeccccCCccCCcchhHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccC---CCCcccCCCcCHHHHHH
Confidence 99999999999999 989888888999999999999999999 89999999999998876 34467799999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH
Q 011959 357 GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 436 (474)
Q Consensus 357 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 436 (474)
+.++|+.++++++.++++++++++++.|+++ .++.+..+++.|+++++++.... . ....++.+.|++
T Consensus 333 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~l--~~~~~~~~~~~g~~~~v~l~~~~--~---------~~~~~l~~~l~~ 399 (439)
T 2oat_A 333 AIAALEVLEEENLAENADKLGIILRNELMKL--PSDVVTAVRGKGLLNAIVIKETK--D---------WDAWKVCLRLRD 399 (439)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHTTS--CTTTEEEEEEETTEEEEEECCCS--S---------CCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh--cCCCcEEEEeeeeEEEEEEecCc--c---------HHHHHHHHHHHH
Confidence 9999998877889999999999999999876 35566678899999999885321 0 012578889999
Q ss_pred CCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 437 EGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 437 ~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+||++.+.+...+|+ ++.+|++++++++++|+++++++
T Consensus 400 ~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 439 (439)
T 2oat_A 400 NGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILSF 439 (439)
T ss_dssp TTEECCBSSSSEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCeEEecCCCCEEEEECccCCCHHHHHHHHHHHHHHHHhC
Confidence 999999876667777 57899999999999999998764
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-56 Score=456.29 Aligned_cols=395 Identities=21% Similarity=0.299 Sum_probs=333.1
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC
Q 011959 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (474)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 132 (474)
.+++++++++++++++.++ +|+++++++|+|+||.||++||||.++++++++||+||+|++++.+++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 76 (439)
T 3dxv_A 6 KALYDRDGAAIGNLQKLRF---------FPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPA 76 (439)
T ss_dssp CCHHHHHHHHBCGGGCCCS---------SCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhccCccCCC---------CCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc
Confidence 4678899999998877542 4899999999999999999999999999999999999999999999998864
Q ss_pred CC---CCCCHHHHHHHHHHHhhCC-CC-CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCC-
Q 011959 133 SF---GAPCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV- 206 (474)
Q Consensus 133 ~~---~~~~~~~~~la~~l~~~~~-~~-~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~- 206 (474)
.+ .++.+...+|+++|+++++ +. ++++|++||++|++.++++++.++++++||+++++|||.+..++..++...
T Consensus 77 ~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 156 (439)
T 3dxv_A 77 GATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQ 156 (439)
T ss_dssp CSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC------
T ss_pred CccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCch
Confidence 33 3468899999999999997 55 799999999999999999988888999999999999999998887766532
Q ss_pred -ccCCC-CCCCCCCCCCCCceEEccCC----------CHHHHHHHHh-cCCCCeEEEEEccccCCCCcccCCHHHHHHHH
Q 011959 207 -ATLGL-PDSPGVPKGATYETLTAPFN----------DVSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 273 (474)
Q Consensus 207 -~~~~~-~~~~g~~~~~~~~~~~~~~~----------d~~~le~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~ 273 (474)
....+ +.. ..+..+|++ |+++|+++++ .+++++++|++||+++++|.+.++++|+++|+
T Consensus 157 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~ 228 (439)
T 3dxv_A 157 ADAAKADGLI--------LLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFA 228 (439)
T ss_dssp -------CEE--------EECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHH
T ss_pred hhccccCCCC--------CCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHH
Confidence 11110 100 112333444 6899999994 44568999999999999999999999999999
Q ss_pred HHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChH
Q 011959 274 RITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352 (474)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~ 352 (474)
++|++||++||+||+|+|| ++|.++..+++++.||++||||++++|+|+||+++++++++.+.+ ..+.+|+ +|++
T Consensus 229 ~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~---~~~~~t~-~~~~ 304 (439)
T 3dxv_A 229 DICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASA---FAMQTLH-GNPI 304 (439)
T ss_dssp HHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSS---SSCCTTT-TCHH
T ss_pred HHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcC---CCcCCCc-ccHH
Confidence 9999999999999999999 888888889999999999999999999999999999999998873 3467788 9999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHH
Q 011959 353 AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (474)
Q Consensus 353 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (474)
++++++++|+.++++++.++++++++++++.|+++...++....+++.|+|+++++..... ...++......+.+
T Consensus 305 ~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 379 (439)
T 3dxv_A 305 SAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQ-----SREPARAETAKLIY 379 (439)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETT-----TTEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCcc-----ccCCCHHHHHHHHH
Confidence 9999999999887788999999999999999999888888888899999999999864321 11234455678899
Q ss_pred HHHHCCeEecccCC--cceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 433 GMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 433 ~l~~~Gv~v~~~~~--~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.|+++||++.+++. ..+|+ ++.+|++++++++++|++++++
T Consensus 380 ~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 424 (439)
T 3dxv_A 380 RAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSE 424 (439)
T ss_dssp HHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999998864 56677 5788999999999999999875
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-55 Score=445.30 Aligned_cols=408 Identities=22% Similarity=0.301 Sum_probs=328.5
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHh
Q 011959 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (474)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 130 (474)
.++++++++++++++.+... + .|+++.+++|+++||.||++||||.+++++.++||+||+|++|+.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 74 (433)
T 1zod_A 4 NDDATFWRNARHHLVRYGGT----F-----EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGK 74 (433)
T ss_dssp TTCHHHHHHHHHHCCCCSSC----C-----CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhhcccccc----c-----CCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHh
Confidence 45688899988888754321 1 38889999999999999999999999999899999999999999999987
Q ss_pred cC--CCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCc
Q 011959 131 GT--SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVA 207 (474)
Q Consensus 131 ~~--~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~ 207 (474)
+. ..+++.+...+|+++++++++ +.++|+|++||+||++.++++++.++++++||+++++|||.+..++..++....
T Consensus 75 ~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 154 (433)
T 1zod_A 75 LDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGR 154 (433)
T ss_dssp CCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCC
T ss_pred CcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccc
Confidence 52 245678889999999999997 678999999999999999998877788889999999999999988877654321
Q ss_pred cCCCCCCCCCCCCCCCceEEccCC---------CHHHHHHHHhcC-CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Q 011959 208 TLGLPDSPGVPKGATYETLTAPFN---------DVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (474)
Q Consensus 208 ~~~~~~~~g~~~~~~~~~~~~~~~---------d~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (474)
....+...++........+..+|+ |+++|++.++++ ++++++|++||+++++|.+.++++|+++|+++|+
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~ 234 (433)
T 1zod_A 155 KGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCE 234 (433)
T ss_dssp SSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHH
T ss_pred cccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Confidence 110011112100000001112344 389999988752 2478999999999999988889999999999999
Q ss_pred HhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHH
Q 011959 278 ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 356 (474)
Q Consensus 278 ~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aa 356 (474)
+||++||+||+|+|| ++|..+..+++++.||++||||++++|+|+||+++++++++.+... ...+.+|+++|++++++
T Consensus 235 ~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~a 313 (433)
T 1zod_A 235 ARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHEL-GYLFYTTHVSDPLPAAV 313 (433)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHT-TCCCCCTTTTCHHHHHH
T ss_pred HhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCCCCeeEEEEhHHHHHhhccC-CCCCCCCCCcCHHHHHH
Confidence 999999999999999 8887777788899999999999999999999999999999888642 23345789999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH
Q 011959 357 GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 436 (474)
Q Consensus 357 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 436 (474)
+.++|+.++++++.+++++++++++++|+++...++.+..+++.|+|+++++..... ...++.....++.+.|++
T Consensus 314 ~~aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~ 388 (433)
T 1zod_A 314 GLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRR-----TKEPADGLGAKITRECMN 388 (433)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETT-----TTEECTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCcc-----ccCCChHHHHHHHHHHHH
Confidence 999999887788999999999999999998766677777788999999998864210 001112234678889999
Q ss_pred CCeEecccCC----cceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 437 EGVYFAPSQF----EAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 437 ~Gv~v~~~~~----~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+||++.+++. ..+|+ ++.+|++++++++++|++++++
T Consensus 389 ~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 389 LGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp TTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 9999998752 45777 5689999999999999999875
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-55 Score=452.57 Aligned_cols=394 Identities=17% Similarity=0.232 Sum_probs=311.1
Q ss_pred CchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 128 (474)
..+++++++++++++++.. ..+ .|+++++++|+|+||.|||+||||++|++++++||+||+|++|+.+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~ 92 (472)
T 1ohv_A 23 PGPRSRELMKQLNIIQNAE---AVH-------FFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQ 92 (472)
T ss_dssp SCHHHHHHHHHHHHHSCCT---TCC-------CCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGG
T ss_pred CCccHHHHHHHHHhhhccc---ccc-------CCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHH
Confidence 3457888999999887542 111 366789999999999999999999999999999999999999999986
Q ss_pred Hh-----cCCCCC--CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh-----------c----------
Q 011959 129 KK-----GTSFGA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-----------T---------- 179 (474)
Q Consensus 129 ~~-----~~~~~~--~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~-----------~---------- 179 (474)
.. ...++. ..+++.+|+++|++.+| +.++|+|+|||+|||+.|+++++.+ |
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~ 172 (472)
T 1ohv_A 93 NVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMIN 172 (472)
T ss_dssp GHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTT
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCccccccccccccccc
Confidence 43 122332 35778888888888876 6889999999999999999999744 1
Q ss_pred ---C--CcEEEEEeCCCCCCchhHHHhcCCCCc-cCCCCCCC----CCCCCCCCceEEccCC------CHHHHHHHHhcC
Q 011959 180 ---G--RERIIKFEGCYHGHADPFLVKAGSGVA-TLGLPDSP----GVPKGATYETLTAPFN------DVSALENLFENN 243 (474)
Q Consensus 180 ---~--~~~ii~~~~~yhg~~~~~~~~~g~~~~-~~~~~~~~----g~~~~~~~~~~~~~~~------d~~~le~~l~~~ 243 (474)
+ +++||+++++|||++..++..++.... ....+... .++.........+++| |+++|+++|+++
T Consensus 173 ~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 252 (472)
T 1ohv_A 173 QAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKY 252 (472)
T ss_dssp CTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhc
Confidence 3 589999999999999999988875422 11111110 0110000000011233 688999998753
Q ss_pred CC---CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCC--Cceeehhhh-c
Q 011959 244 KG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT--PDLTTLGKI-I 316 (474)
Q Consensus 244 ~~---~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~--pdi~t~sK~-l 316 (474)
.+ ++++|++||+++++|.+.|+++|+++|+++|++||++||+||||+|| ++|.+++.+++|+. ||++||||+ +
T Consensus 253 ~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l 332 (472)
T 1ohv_A 253 RKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMM 332 (472)
T ss_dssp HHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGS
T ss_pred CCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccc
Confidence 22 78999999999999999999999999999999999999999999999 88887888899987 999999999 6
Q ss_pred CCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-Cee
Q 011959 317 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAI 395 (474)
Q Consensus 317 ~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~ 395 (474)
+||+ ++ ++++. .+ ....+++|+++||+++++++++|+.++++++.+++++++++++++|+++..+++ .+.
T Consensus 333 ~GG~----~~-~~~~~-~~---~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~ 403 (472)
T 1ohv_A 333 TGGF----FH-KEEFR-PN---APYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFIS 403 (472)
T ss_dssp SEEE----EE-CGGGS-CS---SSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCE
T ss_pred cCCc----cC-chhhc-cc---ccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence 7544 34 65552 12 255678899999999999999999887788999999999999999998766666 466
Q ss_pred EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+++.|+|+++++.+ ......+.+.|+++||++.+.+...+|+ ++.+|+++|++++++|++++++
T Consensus 404 ~~~~~g~~~~~~~~~-------------~~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 404 RVRGRGTFCSFDTPD-------------ESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp EEEEETTEEEEECSS-------------HHHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred eecCCceEEEEEeCC-------------hhHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 788999999987632 1234678899999999999876567777 7899999999999999999876
Q ss_pred C
Q 011959 474 I 474 (474)
Q Consensus 474 ~ 474 (474)
+
T Consensus 471 ~ 471 (472)
T 1ohv_A 471 F 471 (472)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-55 Score=438.34 Aligned_cols=368 Identities=24% Similarity=0.282 Sum_probs=321.4
Q ss_pred CCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCe
Q 011959 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEM 157 (474)
Q Consensus 80 ~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~ 157 (474)
..|+++++++|+++||.||++||||.++++++++||+||+|++|+.+++++... ..++.+...+++++++++++ .++
T Consensus 17 ~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~~ 95 (395)
T 3nx3_A 17 RFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASA-LER 95 (395)
T ss_dssp SCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHT-CSE
T ss_pred CCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC-CCe
Confidence 358999999999999999999999999999999999999999999999987532 22568889999999999984 789
Q ss_pred EEEeCCHHHHHHHHHHHhHhh-----cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC
Q 011959 158 VRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~-----~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 232 (474)
++|++||+||++.|+++++.. +++++||+++++|||.+..++..++.......+. ....++..++++|
T Consensus 96 v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d 168 (395)
T 3nx3_A 96 VFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFK-------PLISGVKFAKYND 168 (395)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGC-------SCCSCEEEECTTC
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccC-------CCCCCcEEeCCCC
Confidence 999999999999999998877 6789999999999999988887766433221110 1123477889999
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t 311 (474)
+++|++.++ +++++|++||+++++|.+.++++++++|+++|++||++||+||+|+|| ++|..+..+++++.||++|
T Consensus 169 ~~~l~~~l~---~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t 245 (395)
T 3nx3_A 169 ISSVEKLVN---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMT 245 (395)
T ss_dssp HHHHHTTCC---TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE
T ss_pred HHHHHHhcc---CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEE
Confidence 999999886 478999999999999999999999999999999999999999999999 8888888899999999999
Q ss_pred hhhhcCCCcceEEEEecHHH-HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 312 LGKIIGGGLPVGAYGGRRDI-MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i-~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
|||++++|+|+|++++++++ ++.+. +..+.+|+++|+++++++.++|+.++++++.++++++.+++++.|.++..+
T Consensus 246 ~sK~~~~G~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (395)
T 3nx3_A 246 SAKALGCGLSVGAFVINQKVASNSLE---AGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINE 322 (395)
T ss_dssp ECGGGTTTSCCEEEEECHHHHHHHSC---TTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCCCceEEEEEchhhhhhhcC---CcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 88886 345678999999999999999998877889999999999999999998877
Q ss_pred cCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHH
Q 011959 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAE 468 (474)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~ 468 (474)
++....+++.|+++++++.+.. ....+.+.|+++||++.+++...+|+ ++.+|++++++++++|+
T Consensus 323 ~~~~~~~~~~g~~~~~~~~~~~-------------~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~ 389 (395)
T 3nx3_A 323 FDFCKKRKGLGFMQGLSLDKSV-------------KVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLR 389 (395)
T ss_dssp CTTEEEEEEETTEEEEEECTTS-------------CHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEEEEeEEEEEEEEeCCcc-------------hHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 8878888999999999885421 12578889999999999987777887 57889999999999999
Q ss_pred HHHhhC
Q 011959 469 KVLRQI 474 (474)
Q Consensus 469 ~~~~~~ 474 (474)
++++++
T Consensus 390 ~~l~~~ 395 (395)
T 3nx3_A 390 KALKSF 395 (395)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 998763
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=440.40 Aligned_cols=382 Identities=22% Similarity=0.280 Sum_probs=302.3
Q ss_pred CCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCC-CC
Q 011959 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SI 155 (474)
Q Consensus 80 ~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~~ 155 (474)
..|+++++++|+|+||.||++||||.++++++++||+||+|++|+.+++++... ..++.+...+|+++++++++ +.
T Consensus 10 ~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 89 (430)
T 3i4j_A 10 KPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPT 89 (430)
T ss_dssp SCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTT
T ss_pred CCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCC
Confidence 358999999999999999999999999999999999999999999999988542 24678899999999999997 57
Q ss_pred CeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEc
Q 011959 156 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 228 (474)
Q Consensus 156 ~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~ 228 (474)
++|+|+|||+||++.++++++.+ +++++||+++++|||++..++..++........ +..+ ..++..+
T Consensus 90 ~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 163 (430)
T 3i4j_A 90 FRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMR------PEAWPKL 163 (430)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------C------GGGSCEE
T ss_pred CEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCC------CCCceEc
Confidence 89999999999999999998777 788999999999999988877766653322111 1111 0023444
Q ss_pred cCC--------CHHHHHHHHhcCC-CCeEEEEEccccC-CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC
Q 011959 229 PFN--------DVSALENLFENNK-GEIAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (474)
Q Consensus 229 ~~~--------d~~~le~~l~~~~-~~~a~vi~ep~~~-~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (474)
|++ |+++|++++++.. +++++|++||++| ++|.+.++++|+++|+++|++||++||+||+|+|| ++|.+
T Consensus 164 ~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~ 243 (430)
T 3i4j_A 164 PKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSP 243 (430)
T ss_dssp CCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred CCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccch
Confidence 544 4589999987532 5789999999999 99999999999999999999999999999999999 99988
Q ss_pred cccccc-CCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC-CCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHH
Q 011959 298 GAQEYF-GVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 374 (474)
Q Consensus 298 ~~~~~~-g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~-~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 374 (474)
++.+++ ++.||++||||++++| +|+||+++++++++.+.+. +.+.+.+|+++|++++++++++|+.++++++.++++
T Consensus 244 ~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 323 (430)
T 3i4j_A 244 LALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAK 323 (430)
T ss_dssp SGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHH
Confidence 888999 9999999999999999 9999999999999988742 124567899999999999999999887788999999
Q ss_pred HHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccc--hHHHHHHHHHHHHCCeEeccc-------C
Q 011959 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE--TTKFARFYRGMLEEGVYFAPS-------Q 445 (474)
Q Consensus 375 ~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv~v~~~-------~ 445 (474)
++++++++.|+++..+++.+..+++.|+|+++++.+.... .+. .....++.+.|+++||++.+. +
T Consensus 324 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~ 397 (430)
T 3i4j_A 324 ERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATG------QAFETPGIASRIGAAALKRGLITYPGSGAEPNGR 397 (430)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------------CHHHHHHHHHHTTEECC----------
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEecccccc------CCCccHHHHHHHHHHHHhCCCEEEecccccCCCC
Confidence 9999999999998878888888999999999998532100 000 112357889999999999987 2
Q ss_pred CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 446 FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 ~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
...+|++ +.+|++++++++++|++++++
T Consensus 398 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 398 GDHLLLGPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp -CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456764 568999999999999999875
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-54 Score=434.32 Aligned_cols=367 Identities=26% Similarity=0.364 Sum_probs=311.0
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++++++|+++||.||++||||.++++++++||+||+|++++.+++++.... .++.+...+|+++|++++ +.+++
T Consensus 39 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v 117 (420)
T 2pb2_A 39 ADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDAT-FAERV 117 (420)
T ss_dssp CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHS-SCSEE
T ss_pred CCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhC-CCCeE
Confidence 488999999999999999999999999999999999999999999999875322 256788999999999998 47899
Q ss_pred EEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCC
Q 011959 159 RFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN 231 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ 231 (474)
+|++||+||++.++++++.+ +++++||+++++|||.+..++..+|......++ |. ..++..+|++
T Consensus 118 ~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~--------~~~~~~~~~~ 189 (420)
T 2pb2_A 118 LFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPK--------PADIIHVPFN 189 (420)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSC--------CSCEEEECTT
T ss_pred EEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCC--------CCCeEEecCC
Confidence 99999999999999988765 577799999999999998888776653221111 11 1236778888
Q ss_pred CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee
Q 011959 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310 (474)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~ 310 (474)
|+++|++.++ +++++|++||++|++|.+.++.+++++|+++|++||++||+||+|+|| ++|.+++.+++++.||++
T Consensus 190 d~~~le~~i~---~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii 266 (420)
T 2pb2_A 190 DLHAVKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL 266 (420)
T ss_dssp CHHHHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE
T ss_pred CHHHHHHHhc---cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE
Confidence 9999999986 378999999999988888888899999999999999999999999999 888877778889999999
Q ss_pred ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 311 t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
||||++++|+|+||+++++++++.+.. ..+..|+++|+++++++.++|+.++++++.++++++++++++.|+++...
T Consensus 267 t~sK~l~~G~~iG~~~~~~~l~~~l~~---~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 343 (420)
T 2pb2_A 267 TSAKALGGGFPVSAMLTTQEIASAFHV---GSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQ 343 (420)
T ss_dssp EECGGGGTTSCCEEEEECHHHHTTCC-------CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccCCCceEEEEEhHHHHHhhcC---CCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998887763 34667889999999999999999877788999999999999999887555
Q ss_pred cCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHH
Q 011959 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 468 (474)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~ 468 (474)
++.+..+++.|+++++++.... .....++.+.|+++||++.+++.+.+|++ +.+|++++++++++|+
T Consensus 344 ~~~~~~~~~~g~~~~v~~~~~~-----------~~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~~~~~l~ 412 (420)
T 2pb2_A 344 FDIFSDIRGMGLLIGAELKPKY-----------KGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFA 412 (420)
T ss_dssp HCCEEEEEEETTEEEEEECGGG-----------TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEEEEecceEEEEEECCCc-----------hHHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 6766678899999999885320 00125788899999999998876677875 7899999999999999
Q ss_pred HHHhh
Q 011959 469 KVLRQ 473 (474)
Q Consensus 469 ~~~~~ 473 (474)
+++++
T Consensus 413 ~~l~~ 417 (420)
T 2pb2_A 413 QAVGK 417 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-54 Score=438.67 Aligned_cols=364 Identities=21% Similarity=0.279 Sum_probs=306.8
Q ss_pred EEeeccCEEEE-cCCCEEEeccCChhhccCCCCCHHHH-H-HHHH---HHHhcCCCC--CCCHHHHHHHHHHHhhCC--C
Q 011959 85 FDSVKGSHMWD-IDGNEYIDYVGSWGPAIIGHADDQVL-A-ALGE---TMKKGTSFG--APCLLENVLAEMVISAVP--S 154 (474)
Q Consensus 85 ~~~~~G~~~~d-~dG~~~iD~~~~~~~~~lG~~~p~v~-~-a~~~---~~~~~~~~~--~~~~~~~~la~~l~~~~~--~ 154 (474)
+.+++|+|+|| .||++||||.++++++++||+||+|+ + |+.+ +++++..++ ++.+...+++++|+++++ +
T Consensus 39 ~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~ 118 (449)
T 2cjg_A 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPA 118 (449)
T ss_dssp TTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTT
T ss_pred EeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCC
Confidence 46999999999 99999999999999999999999999 9 9999 888764333 678889999999999985 6
Q ss_pred CCeEEEeCCHHHHHHHHHHHhHhhcC------------CcEEEEEeCCCCCCchhHHHhcCC-CCccCCC-CCCCCCCCC
Q 011959 155 IEMVRFVNSGTEACMGVLRLARAFTG------------RERIIKFEGCYHGHADPFLVKAGS-GVATLGL-PDSPGVPKG 220 (474)
Q Consensus 155 ~~~v~~~~sGseA~~~al~~ar~~~~------------~~~ii~~~~~yhg~~~~~~~~~g~-~~~~~~~-~~~~g~~~~ 220 (474)
.++|+|++||+||++.|+++++.+++ +++||+++++|||++..++..++. ......+ |.
T Consensus 119 ~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~------- 191 (449)
T 2cjg_A 119 LPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKF------- 191 (449)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCC-------
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCC-------
Confidence 78999999999999999999887765 789999999999999988877764 1111111 11
Q ss_pred CCCceEEccCCC--H-------------HHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011959 221 ATYETLTAPFND--V-------------SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (474)
Q Consensus 221 ~~~~~~~~~~~d--~-------------~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (474)
..++..+|++| . ++|+++++++++++++|++||++|++|.+.++++|+++|+++|++||++||+
T Consensus 192 -~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~ 270 (449)
T 2cjg_A 192 -DWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIF 270 (449)
T ss_dssp -CCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred -CCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence 12356666666 3 3488888755468999999999999999999999999999999999999999
Q ss_pred eccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcC--CCCcccccCCCCChHHHHHHHHHHH
Q 011959 286 DEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLK 362 (474)
Q Consensus 286 DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~--~~~~~~~~t~~~~~~~~aaa~aal~ 362 (474)
||+|+|| ++|.+++.+++++.||++||||++ |+||+++++++++.+.+ .....+.+|+++|+++++++.++|+
T Consensus 271 DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~ 346 (449)
T 2cjg_A 271 DEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILE 346 (449)
T ss_dssp ECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHH
T ss_pred eccccCCCccCcceeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHH
Confidence 9999999 988888888899999999999999 89999999999886432 1134566899999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHhhhcCC-eeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEe
Q 011959 363 RLKEPGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 441 (474)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 441 (474)
.++++++.+++++++++++++|+++...++. +..+++.|+|+++++.. ......+.+.|+++||++
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~-------------~~~~~~~~~~l~~~Gv~v 413 (449)
T 2cjg_A 347 VIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPT-------------TADRDELIRQLWQRAVIV 413 (449)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSS-------------HHHHHHHHHHHHHTTEEC
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECC-------------hHHHHHHHHHHHHCCeEE
Confidence 8877789999999999999999988666775 67788999999987742 112357889999999999
Q ss_pred cccCCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 442 APSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 442 ~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+++...+|+ ++.+|+++|++++++|++++++
T Consensus 414 ~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 414 LPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp EEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9987677787 6789999999999999999875
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=421.01 Aligned_cols=378 Identities=22% Similarity=0.294 Sum_probs=308.8
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CC-CCCCHHHHHHHHHHHhhCC-CCC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF-GAPCLLENVLAEMVISAVP-SIE 156 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~-~~~~~~~~~la~~l~~~~~-~~~ 156 (474)
.|+++.+++|+++||.||++|||+.++++++++||+||+|++|+.+++++.. .+ +++.+...+|+++++++++ +.+
T Consensus 32 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 111 (449)
T 3a8u_X 32 DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLN 111 (449)
T ss_dssp SCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEE
T ss_pred CCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 3889999999999999999999999999999999999999999999997742 23 5678889999999999997 678
Q ss_pred eEEEeCCHHHHHHHHHHHhHhhc------CCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEcc
Q 011959 157 MVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP 229 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~ 229 (474)
+|+|++||++|++.|+++++.++ ++++||+++++|||.+...+..++.......+ |...++ ..+.+|
T Consensus 112 ~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~------~~v~~~ 185 (449)
T 3a8u_X 112 HVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDV------DHLPHT 185 (449)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSE------EEECCC
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCC------eEecCC
Confidence 99999999999999999887655 67899999999999988887776642211110 111111 111111
Q ss_pred ----CC----C--------HHHHHHHHhcCC-CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011959 230 ----FN----D--------VSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (474)
Q Consensus 230 ----~~----d--------~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (474)
++ | +++|++.+++++ +++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+||
T Consensus 186 ~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~ 265 (449)
T 3a8u_X 186 LLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGF 265 (449)
T ss_dssp CCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred ccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Confidence 11 4 899999987532 478999999999999999999999999999999999999999999999
Q ss_pred -ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC------CCcccccCCCCChHHHHHHHHHHHHh
Q 011959 293 -RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA------GPMYQAGTLSGNPLAMTAGIHTLKRL 364 (474)
Q Consensus 293 -r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~------~~~~~~~t~~~~~~~~aaa~aal~~~ 364 (474)
++|..+..+++++.||++|+||+|++| +|+|++++++++++.+... ....+.+|+++|+++++++.++|+.+
T Consensus 266 g~~g~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~ 345 (449)
T 3a8u_X 266 GRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLL 345 (449)
T ss_dssp TTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHH
Confidence 888777778889999999999999988 9999999999999988742 12245678999999999999999988
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc
Q 011959 365 KEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS 444 (474)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~ 444 (474)
+++++.++++++++++++.|+++ ..++....+++.|+++++++...... .......+.+.|+++||++.++
T Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~--------~~~~~~~~~~~l~~~Gv~v~~~ 416 (449)
T 3a8u_X 346 QKENLVQSVAEVAPHFEKALHGI-KGAKNVIDIRNFGLAGAIQIAPRDGD--------AIVRPFEAGMALWKAGFYVRFG 416 (449)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCBTTB--------SSHHHHHHHHHHHHHTEECEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHH-hcCCCeEEEeeeEEEEEEEEecCccc--------ccccHHHHHHHHHHCCcEEecC
Confidence 77789999999999999999873 34666667889999999998542100 0001135788888999999987
Q ss_pred CCcceEEe--cCCcHHHHHHHHHHHHHHHhhC
Q 011959 445 QFEAGFTS--LAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 445 ~~~~~~~~--~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+ ..+|++ +.+|++++++++++|+++++++
T Consensus 417 g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 417 G-DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred C-CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 6 678886 7899999999999999998753
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=409.52 Aligned_cols=379 Identities=26% Similarity=0.384 Sum_probs=303.0
Q ss_pred HHHHHHHHhhh-CCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCC-CHHHHHHHHHHHHh
Q 011959 53 SEEAFNVAKEL-MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA-DDQVLAALGETMKK 130 (474)
Q Consensus 53 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~ 130 (474)
++++.++..++ +..+... | ..|+++.+++|+++||.+|++|||+.++.+++++||+ ||+|++|+.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~ 74 (419)
T 2eo5_A 3 SRKIIEESDIYLATSTRDP----E----LFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQK 74 (419)
T ss_dssp HHHHHHHHHHHSCCCCCSS----C----CCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhhhccccccc----c----CCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhh
Confidence 45677776666 5443221 1 1488899999999999999999999999999999999 99999999999987
Q ss_pred cCCC---CCCCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCC
Q 011959 131 GTSF---GAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG 205 (474)
Q Consensus 131 ~~~~---~~~~~~~~~la~~l~~~~~-~-~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~ 205 (474)
...+ .++.+...+|+++++++++ + .++|+|++||+||++.++++++.++ +++||+++++|||.+...+..++..
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~-~~~vi~~~p~yh~~~~~~~~~~~~~ 153 (419)
T 2eo5_A 75 LAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG-RKYIIAFLGGFHGRTFGSISLTASK 153 (419)
T ss_dssp SCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTS-CCEEEEETTCCCCSSHHHHHHCCSC
T ss_pred CccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhh-CCcEEEECCCcCCCCHhhHhhcCCc
Confidence 5332 3678889999999999997 3 5799999999999999999887666 7899999999999999888776642
Q ss_pred -CccCCC-CCCCCCCCCCCCceEEccCC---------------------CHHHHH-HHHhcCC--CCeEEEEEccccCCC
Q 011959 206 -VATLGL-PDSPGVPKGATYETLTAPFN---------------------DVSALE-NLFENNK--GEIAAIILEPVVGNS 259 (474)
Q Consensus 206 -~~~~~~-~~~~g~~~~~~~~~~~~~~~---------------------d~~~le-~~l~~~~--~~~a~vi~ep~~~~~ 259 (474)
.....+ +. ...+..+|++ |+++|+ +.++++. +++++|++||+++++
T Consensus 154 ~~~~~~~~~~--------~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~t 225 (419)
T 2eo5_A 154 AVQRSIVGPF--------MPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEG 225 (419)
T ss_dssp GGGGCSSCCC--------CTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTT
T ss_pred cccccccCCC--------CCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCC
Confidence 111111 10 0123333332 367888 8887421 468999999998889
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcC
Q 011959 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 337 (474)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~ 337 (474)
|.+.++++++++|+++|++||++||+||+|+|| ++|..+..+++++.||++||||++++| +|+||++++++++ .+ .
T Consensus 226 G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~ 303 (419)
T 2eo5_A 226 GYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-P 303 (419)
T ss_dssp TSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC--
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-C
Confidence 988889999999999999999999999999999 888777778889999999999999999 9999999999887 55 2
Q ss_pred CCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcc
Q 011959 338 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 417 (474)
Q Consensus 338 ~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~ 417 (474)
..+.+|+++|+++++++.++|+.+++ +.++++++++++++.|+++ ...+++.|+|+++++..
T Consensus 304 ---~~~~~t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~------~~~~~~~g~~~~i~~~~------- 365 (419)
T 2eo5_A 304 ---GMHSNTFGGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL------ADDVRGIGLAWGLEYNE------- 365 (419)
T ss_dssp --------CCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS------SSEEEEETTEEEEECSC-------
T ss_pred ---cccCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh------hhheEeeeEEEEEEEec-------
Confidence 23567999999999999999998764 8888889999998888654 34568889999887731
Q ss_pred cccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 418 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+..... +.+.|+++||++.+.+...+|+ ++.+|++++++++++|+++++++
T Consensus 366 -----~~~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 366 -----KKVRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp -----HHHHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -----CccHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 112235 8888999999999976667788 56889999999999999998763
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-50 Score=405.41 Aligned_cols=398 Identities=28% Similarity=0.444 Sum_probs=321.2
Q ss_pred hHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc
Q 011959 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG 131 (474)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~ 131 (474)
+++++.++.+++++.+.... +|+++.+++|+++||.+|++||||.++.++.++||++|+|++++.+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~ 73 (426)
T 1sff_A 3 SNKELMQRRSQAIPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL 73 (426)
T ss_dssp CHHHHHHHHHHHSCTTBCCS---------EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHhcCcccccc---------CCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhC
Confidence 56788889899988766432 388999999999999999999999999888899999999999999998764
Q ss_pred CC---CCCCCHHHHHHHHHHHhhCCC-C-CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCC
Q 011959 132 TS---FGAPCLLENVLAEMVISAVPS-I-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (474)
Q Consensus 132 ~~---~~~~~~~~~~la~~l~~~~~~-~-~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (474)
.. ..++.+...+|++.|++++++ . ++|+|++||++|++.++++++.++++++||+++++||+.....+...|...
T Consensus 74 ~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~ 153 (426)
T 1sff_A 74 SHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVN 153 (426)
T ss_dssp SCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCT
T ss_pred CCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCcc
Confidence 22 234678889999999999953 4 899999999999999999888888878999999999999887777665421
Q ss_pred -ccCCCCCCCCCCCCCCCceEEccC-----C-----CHHHHHHHHhc--CCCCeEEEEEccccCCCCcccCCHHHHHHHH
Q 011959 207 -ATLGLPDSPGVPKGATYETLTAPF-----N-----DVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 273 (474)
Q Consensus 207 -~~~~~~~~~g~~~~~~~~~~~~~~-----~-----d~~~le~~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~ 273 (474)
....+ .+. ...+..+|+ + |+++|++.+++ +++++++|+++|+++|+|.+.++++++++|+
T Consensus 154 ~~~~~~--~~~-----~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~ 226 (426)
T 1sff_A 154 PYSAGM--GLM-----PGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLR 226 (426)
T ss_dssp TTTTTS--CCC-----CSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHH
T ss_pred cccccc--CCC-----CCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHH
Confidence 00000 000 001222332 2 68899998874 2247899999999888998889999999999
Q ss_pred HHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChH
Q 011959 274 RITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352 (474)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~ 352 (474)
++|++||++||+||+|+|| +.|..+..+.+++.||++||||++++|+|+||+++++++++.+.. ..+..|++.|++
T Consensus 227 ~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~---~~~~~~~~~~~~ 303 (426)
T 1sff_A 227 ALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAP---GGLGGTYAGNPI 303 (426)
T ss_dssp HHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCT---TSBCCSSSSCHH
T ss_pred HHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhcc---CCcCcCCCCCHH
Confidence 9999999999999999999 878767777888899999999999999999999999999888763 335678899999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHH
Q 011959 353 AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (474)
Q Consensus 353 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (474)
+++++.++|+.++++++.+++++++++++++|+++...++....+++.|+++++++.... ....|+.....++.+
T Consensus 304 ~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~l~~ 378 (426)
T 1sff_A 304 ACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDG-----DHNKPDAKLTAEIVA 378 (426)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGG-----CTTSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCc-----cccCCChHHHHHHHH
Confidence 999999999988777899999999999999999876556666667788999999885311 001122334567889
Q ss_pred HHHHCCeEecccC--CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 433 GMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 433 ~l~~~Gv~v~~~~--~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.|+++||++.++. ...+|++ +.++++++++++++|++++++
T Consensus 379 ~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 423 (426)
T 1sff_A 379 RARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDE 423 (426)
T ss_dssp HHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCcEEecCCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999876 3567775 478999999999999998865
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-50 Score=405.31 Aligned_cols=371 Identities=25% Similarity=0.339 Sum_probs=302.1
Q ss_pred CeE-EEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCC-CCC
Q 011959 82 PIV-FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIE 156 (474)
Q Consensus 82 p~~-~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~~~ 156 (474)
|++ +.+++|+++||.+|++|||+.++++++++||++|+|++|+.+++++... .+++.+...+++++++++++ +.+
T Consensus 25 ~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 104 (429)
T 1s0a_A 25 PVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLE 104 (429)
T ss_dssp CCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCC
T ss_pred CceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 555 9999999999999999999999999999999999999999999987432 24567788999999999997 788
Q ss_pred eEEEeCCHHHHHHHHHHHhHhhcC-----CcEEEEEeCCCCCCchhHHHhcCCCC-ccCCC-CCCCCCCCCCCCceEEcc
Q 011959 157 MVRFVNSGTEACMGVLRLARAFTG-----RERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTAP 229 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~-----~~~ii~~~~~yhg~~~~~~~~~g~~~-~~~~~-~~~~g~~~~~~~~~~~~~ 229 (474)
+|+|++||+||++.++++++.+++ +++||+++++||++....+..++... ....+ +...++ ..+.++
T Consensus 105 ~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 178 (429)
T 1s0a_A 105 CVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN------LFAPAP 178 (429)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCC------EEECCC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCc------eEeCCC
Confidence 999999999999999998776654 78999999999999887776655321 00000 000110 112221
Q ss_pred ---------CCCHHHHHHHHhcCCCCeEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc
Q 011959 230 ---------FNDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 298 (474)
Q Consensus 230 ---------~~d~~~le~~l~~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~ 298 (474)
.+|+++|++.++++++++++|++||+ +|++|.+.++++++++|+++|++||++||+||+|+|| ++|..+
T Consensus 179 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~ 258 (429)
T 1s0a_A 179 QSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF 258 (429)
T ss_dssp CSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred cccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHH
Confidence 24799999998754457899999999 8999998999999999999999999999999999999 888767
Q ss_pred cccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC--CCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHH
Q 011959 299 AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 375 (474)
Q Consensus 299 ~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 375 (474)
..+++++.||++||||+|++| +|+||+++++++++.+... ....+.+|+++|+++++++.++|+.++++++.+++++
T Consensus 259 ~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~ 338 (429)
T 1s0a_A 259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVAD 338 (429)
T ss_dssp GGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 778889999999999999999 9999999999999888742 1123557899999999999999998877788899999
Q ss_pred HHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--c
Q 011959 376 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--L 453 (474)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~ 453 (474)
++++++++|+++.. ++....+++.|+++++++... . + ...+.+.|+++||++.+.+ ..+|++ +
T Consensus 339 ~~~~l~~~L~~l~~-~~~~~~~~~~g~~~~~~~~~~-~---------~---~~~l~~~l~~~Gi~v~~~~-~~iRis~~~ 403 (429)
T 1s0a_A 339 IEVQLREQLAPARD-AEMVADVRVLGAIGVVETTHP-V---------N---MAALQKFFVEQGVWIRPFG-KLIYLMPPY 403 (429)
T ss_dssp HHHHHHHHHGGGGG-CTTEEEEEEETTEEEEEESSC-B---------C---HHHHHHHHHHTTEECCCBT-TEEEECCCT
T ss_pred HHHHHHHHHHHHhc-CCCEEEEEEeeEEEEEEECCc-c---------c---HHHHHHHHHHCCCEEeccC-CEEEEECCC
Confidence 99999999987532 454556788899999887431 0 1 2467888899999999864 567876 7
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q 011959 454 AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+|++++++++++|++++++
T Consensus 404 ~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 404 IILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp TCCHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 89999999999999998754
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-50 Score=403.00 Aligned_cols=361 Identities=25% Similarity=0.362 Sum_probs=308.8
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++++++|+++||.||++||||.+++++.++||+||+|.+++.+++++.... .++.+...++++++++++ +.+++
T Consensus 18 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v 96 (392)
T 3ruy_A 18 LPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLT-NKEMV 96 (392)
T ss_dssp CSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHH-TCSEE
T ss_pred CCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhc-CCCEE
Confidence 489999999999999999999999999999999999999999999999874321 245677889999999988 48899
Q ss_pred EEeCCHHHHHHHHHHHhHhh--------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC
Q 011959 159 RFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 230 (474)
+|++||++|++.++++++.. +++++||+.+++|||....++..++.......+ .+ ...++..+++
T Consensus 97 ~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~ 169 (392)
T 3ruy_A 97 LPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGF--GP-----MLPGIIVIPY 169 (392)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTC--CS-----CCSSEEEECT
T ss_pred EEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhcccc--CC-----CCCCCeeeCc
Confidence 99999999999999987766 567899999999999999888876653322111 11 1123677889
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCce
Q 011959 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 309 (474)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi 309 (474)
+|+++|+++++ +++++|++++++|++|.+.++++|+++|+++|++||++||+||+|+|| +.|..+..+.+++.||+
T Consensus 170 ~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~ 246 (392)
T 3ruy_A 170 GDLEALKAAIT---PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDM 246 (392)
T ss_dssp TCHHHHHHHCC---TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE
T ss_pred ccHHHHHHHhc---cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCE
Confidence 99999999987 479999999999999999999999999999999999999999999999 88888888888999999
Q ss_pred eehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Q 011959 310 TTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388 (474)
Q Consensus 310 ~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~ 388 (474)
+||||+++|| +|+||+++++++++.+. ...+.++++.|+++++++.++|+.++++++.++++++.+++++.|+++.
T Consensus 247 ~~~SK~l~gG~~~~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~ 323 (392)
T 3ruy_A 247 YILGKALGGGVFPISCAAANRDILGVFE---PGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEID 323 (392)
T ss_dssp EEECGGGGTTTSCCEEEEECHHHHTTCC---TTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEchhhhCChhhhEEEEECHHHHhhhc---cCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 99999999999998876 3446678999999999999999988768899999999999999987652
Q ss_pred hhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHH
Q 011959 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITA 466 (474)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~ 466 (474)
.+....+++.|.++++.+... ..++.+.|.++||++.+++...+|++ +.+|++++++++++
T Consensus 324 --~~~~~~~~~~g~~~~~~~~~~---------------~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~ 386 (392)
T 3ruy_A 324 --NPMITEVRGKGLFIGIELNEP---------------ARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQK 386 (392)
T ss_dssp --CTTEEEEEEETTEEEEEESSC---------------SHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHH
T ss_pred --CCCceEEEeeeeEEEEEEcch---------------HHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 245667788899999887431 15788899999999999877778886 78899999999999
Q ss_pred HHHHHh
Q 011959 467 AEKVLR 472 (474)
Q Consensus 467 l~~~~~ 472 (474)
|+++++
T Consensus 387 l~~~l~ 392 (392)
T 3ruy_A 387 IKAVLS 392 (392)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998863
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-50 Score=403.64 Aligned_cols=368 Identities=26% Similarity=0.365 Sum_probs=316.9
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++++++|+++||.+|++||||.++++++++||+||++.+++.+++++... ..++.+...++++++++++ +.+++
T Consensus 21 ~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~~~v 99 (406)
T 4adb_A 21 APFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDAT-FADRV 99 (406)
T ss_dssp CSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHS-SCSEE
T ss_pred CCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhC-CCCeE
Confidence 48899999999999999999999999999999999999999999999987432 3357788999999999999 56799
Q ss_pred EEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC
Q 011959 159 RFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 232 (474)
+|++||++|++.++++++.+ +++++||+.+++||+....+....+.......+. ....++..+|++|
T Consensus 100 ~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d 172 (406)
T 4adb_A 100 FFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFA-------PLPADIRHAAYND 172 (406)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGC-------SCCSSEEEECTTC
T ss_pred EEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCC-------CCCCCceEeCCCc
Confidence 99999999999999987655 7789999999999999988888777543321111 1123577888999
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t 311 (474)
+++|++.++ +++++|+++|+++++|.+.++.+++++|+++|++||++||+||+|+|| +.|..+..+.+++.||++|
T Consensus 173 ~~~l~~~l~---~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t 249 (406)
T 4adb_A 173 INSASALID---DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLT 249 (406)
T ss_dssp HHHHHTTCS---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE
T ss_pred HHHHHHHhc---CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEEE
Confidence 999999886 478999999988888888778888999999999999999999999999 8888777788899999999
Q ss_pred hhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
|||++++|+|+||+++++++++.+. ...+..+++.|+++++++.++|+.++++++.++++++++++++.|+++...+
T Consensus 250 ~sK~~~~G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 326 (406)
T 4adb_A 250 TAKALGGGFPVGALLATEECARVMT---VGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRY 326 (406)
T ss_dssp ECGGGGTTSCCEEEEECHHHHHTCC---TTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhcCCCCeEEEEEcHHHHhhhc---cCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999887 3446678999999999999999988778889999999999999999887767
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHH
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~ 469 (474)
....++++.|.++++++..... ....++.+.|+++||++.+.+...+|+ ++.+|++++++++++|++
T Consensus 327 ~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~ 395 (406)
T 4adb_A 327 GLFSEVRGLGLLIGCVLNADYA-----------GQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAA 395 (406)
T ss_dssp CCEEEEEEETTEEEEEECTTTT-----------TCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEEEEeCCcH-----------HHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7777888999999999864210 113578899999999999987778888 688999999999999999
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
++++
T Consensus 396 ~l~~ 399 (406)
T 4adb_A 396 ACEH 399 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-47 Score=381.89 Aligned_cols=365 Identities=26% Similarity=0.364 Sum_probs=302.9
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
+|+++.+++|+++||.+|++||||.++++++++||++|++++++.+++++.... .++.+...++++++++++ +.+++
T Consensus 22 ~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v 100 (397)
T 2ord_A 22 FPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNT-FGGKV 100 (397)
T ss_dssp CSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTT-TSCEE
T ss_pred CCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhc-CCCeE
Confidence 589999999999999999999999999999999999999999999999874321 245688899999999998 57899
Q ss_pred EEeCCHHHHHHHHHHHhHhh-----cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCCC
Q 011959 159 RFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~-----~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d 232 (474)
++++||++|++.+++.++.+ +++++||+++++||+.....+...|......++ |.. .++..+|++|
T Consensus 101 ~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~--------~~~~~~~~~d 172 (397)
T 2ord_A 101 FFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLV--------PGFEYFEFNN 172 (397)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCC--------TTEEEECTTC
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCC--------CCeeEecCCC
Confidence 99999999999999976544 467789999999999988766665542111000 111 2367778889
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t 311 (474)
+++|++.++ +++++|++++++|++|.+.++.+++++|+++|++||++||+||+|+|| +.|..+..+.+++.||++|
T Consensus 173 ~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s 249 (397)
T 2ord_A 173 VEDLRRKMS---EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLT 249 (397)
T ss_dssp HHHHHHHCC---TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE
T ss_pred HHHHHHHhh---cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeee
Confidence 999999886 378999999999999986667777999999999999999999999999 7776666667788899999
Q ss_pred hhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
|||++++|+|+||++++++++ .+. ...+..+++.|+++++++.++|+.++++++.++++++++++++.|+++...+
T Consensus 250 ~sK~~~~G~r~G~~~~~~~~~-~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 325 (397)
T 2ord_A 250 TAKGLGGGVPIGAVIVNERAN-VLE---PGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEY 325 (397)
T ss_dssp ECGGGGTTSCCEEEEECSTTC-CCC---TTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eccccCCCcCeEEEEEchHhc-ccC---CCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998876 554 2345668899999999999999988777899999999999999998875455
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHHH
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEK 469 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~ 469 (474)
+....+++.|.++++.+.... ...++.+.|+++||++.+++...+|++ +.++++++++++++|++
T Consensus 326 ~~~~~~~~~g~~~~~~~~~~~-------------~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~~ 392 (397)
T 2ord_A 326 DVVADVRGMGLMIGIQFREEV-------------SNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKK 392 (397)
T ss_dssp TTEEEEEEETTEEEEEECTTS-------------CHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CceEEEEEEeEEEEEEECChH-------------HHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 655567788999998874310 125788899999999998866678886 67899999999999999
Q ss_pred HHhhC
Q 011959 470 VLRQI 474 (474)
Q Consensus 470 ~~~~~ 474 (474)
+++++
T Consensus 393 ~l~~~ 397 (397)
T 2ord_A 393 VLQGI 397 (397)
T ss_dssp HHHTC
T ss_pred HHhhC
Confidence 98764
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-46 Score=373.31 Aligned_cols=361 Identities=30% Similarity=0.433 Sum_probs=298.7
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCC-CCCe
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVP-SIEM 157 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~-~~~~ 157 (474)
.|+++.+++|+++||.+|++||||.++.+++++||.+|.+++++.+++++.... .++.+...+++++++++++ +.++
T Consensus 27 ~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~ 106 (395)
T 1vef_A 27 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNR 106 (395)
T ss_dssp CSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEE
T ss_pred CCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHHHhcCCCcCE
Confidence 488899999999999999999999999988999999999999999999874321 2467889999999999986 5789
Q ss_pred EEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCC-CCCCCCCCCCCCCceEEccCCCHHHH
Q 011959 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDSPGVPKGATYETLTAPFNDVSAL 236 (474)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~-~~~~~g~~~~~~~~~~~~~~~d~~~l 236 (474)
+++++||++|++.+++.++.++++++||+++++||+.....+...|....... .|. ..++..++++|+++|
T Consensus 107 v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~--------~~~~~~~~~~d~~~l 178 (395)
T 1vef_A 107 VFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL--------VEPVEFIPYNDVEAL 178 (395)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSC--------SSCEEEECTTCHHHH
T ss_pred EEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCC--------CCCeeEeCCCcHHHH
Confidence 99999999999999997665577889999999999988777666554321100 011 123566777899999
Q ss_pred HHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhh
Q 011959 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKI 315 (474)
Q Consensus 237 e~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~ 315 (474)
++.++ +++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+|| +.|..+..+.+++.+|+++|||+
T Consensus 179 ~~~i~---~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~ 255 (395)
T 1vef_A 179 KRAVD---EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKA 255 (395)
T ss_dssp HHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGG
T ss_pred HHHhc---cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEEEEccc
Confidence 99986 368999999999999999999999999999999999999999999999 77766666777888999999999
Q ss_pred cCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee
Q 011959 316 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (474)
Q Consensus 316 l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (474)
+++|+|+||+++++++++.+.. ..+..+++.|+++++++.++|+.+.++++.++++++++++++.|+++.. +...
T Consensus 256 ~~~g~~~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~ 330 (395)
T 1vef_A 256 LGGGVPLGVAVMREEVARSMPK---GGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPS--PKIR 330 (395)
T ss_dssp GGTTSSCEEEEEEHHHHHTSCT---TSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCC--TTEE
T ss_pred ccCCCceEEEEehHHHHhhhcc---CCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc--CceE
Confidence 9999999999999998887763 2345678899999999999999876667888999999999998876532 3344
Q ss_pred EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccCCcceEEe--cCCcHHHHHHHHHHHHHHHh
Q 011959 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~~~ 472 (474)
.+++.|.++++.+..+ ...+.+.|+ ++||++.+.+...+|++ +.++++++++++++|+++++
T Consensus 331 ~~~~~g~~~~~~~~~~---------------~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 395 (395)
T 1vef_A 331 EVRGMGLMVGLELKEK---------------AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVLA 395 (395)
T ss_dssp EEEEETTEEEEEESSC---------------SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEEEEEEcCh---------------HHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 5677888999887421 156888888 99999998766678884 57899999999999998863
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=352.56 Aligned_cols=355 Identities=28% Similarity=0.390 Sum_probs=289.7
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++.+++|+++||.+|+.||||.++.+.+++||.+|.+.+++.+++++.. ...++.....+++++++++++-.+++
T Consensus 10 ~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~v 89 (375)
T 2eh6_A 10 LPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGKV 89 (375)
T ss_dssp EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSCEEE
T ss_pred CCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCCCeE
Confidence 4889999999999999999999999998878999999999999999997642 12356777889999999988423899
Q ss_pred EEeCCHHHHHHHHHHHhHhhc-----CCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCCC
Q 011959 159 RFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~-----~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d 232 (474)
++++||++|++.++++++.++ ++++|++.+++||+....+....+..+..... +. ..++..++++|
T Consensus 90 ~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~d 161 (375)
T 2eh6_A 90 FFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPL--------VPGFSYAKLND 161 (375)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSC--------CSSEEEECTTC
T ss_pred EEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCC--------CCCceeCCCch
Confidence 999999999999999766554 45899999999999988777665543211111 11 12366777789
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t 311 (474)
+++|++.++ +++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+|| +.+..+..+.++..+|+++
T Consensus 162 ~~~l~~~l~---~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s 238 (375)
T 2eh6_A 162 IDSVYKLLD---EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIA 238 (375)
T ss_dssp HHHHHTTCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE
T ss_pred HHHHHHHhc---CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEE
Confidence 999998886 368999999999999999899999999999999999999999999999 6665555667788899999
Q ss_pred hhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
|||.+++|+|+||+++++++++.+.. ..+..+++.++++++++.++|+.+. ++.++++++++++++.|+++.
T Consensus 239 ~SK~~~~g~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~--- 310 (375)
T 2eh6_A 239 LAKGLGGGVPIGAILAREEVAQSFTP---GSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLKELG--- 310 (375)
T ss_dssp ECGGGGTTSCCEEEEEEHHHHTTCCT---TSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTT---
T ss_pred EcccccCCCCeEEEEEcHHHHhhhcC---CCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh---
Confidence 99999999999999999998887763 2345678889999999999998775 678888888888888887642
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHHH
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEK 469 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~ 469 (474)
. ..+++.|.++++++..+ ..++.+.|+++||.+.+.+...+|++ ..++++++++++++|++
T Consensus 311 -~-~~~~~~g~~~~~~~~~~---------------~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 373 (375)
T 2eh6_A 311 -K-GKVKGRGLMLGLELERE---------------CKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLRE 373 (375)
T ss_dssp -S-SEEEEETTEEEEECSSC---------------CHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred -c-CCceEEEEEEEEEEcCc---------------HHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2 34567889988877421 14678888999999998766678886 57899999999999987
Q ss_pred HH
Q 011959 470 VL 471 (474)
Q Consensus 470 ~~ 471 (474)
++
T Consensus 374 ~l 375 (375)
T 2eh6_A 374 IL 375 (375)
T ss_dssp HC
T ss_pred hC
Confidence 63
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=334.17 Aligned_cols=365 Identities=19% Similarity=0.201 Sum_probs=283.9
Q ss_pred CchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEE-eeccCEEEEcCCCEEEeccCChhhccCC-CCCHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFD-SVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGE 126 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~-~~~G~~~~d~dG~~~iD~~~~~~~~~lG-~~~p~v~~a~~~ 126 (474)
.+.+++++.++.+++.+.|+. +|. +.++. +++|+++|| ||++||||.+| +++| +.+|++++++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~g~~--~r~-------~~~~~~~~~g~~~~~-~g~~~id~~~~---~~lg~~~~~~v~~a~~~ 89 (427)
T 2w8t_A 23 LLSKFDGLIAERQKLLDSGVT--DPF-------AIVMEQVKSPTEAVI-RGKDTILLGTY---NYMGMTFDPDVIAAGKE 89 (427)
T ss_dssp TTGGGHHHHHHHHHHHHTTCC--CTT-------CCCCSEEEETTEEEE-TTEEEEECSCC---CTTCGGGCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCc--cee-------eeeccccCCCceEee-CCceEEEEECc---ccccCCCCHHHHHHHHH
Confidence 455788899999998888843 232 34567 999999999 99999999999 6899 589999999999
Q ss_pred HHHh-cCCCC------CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHH
Q 011959 127 TMKK-GTSFG------APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199 (474)
Q Consensus 127 ~~~~-~~~~~------~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~ 199 (474)
++.+ +..++ +..+...+|++.+++++ +.+++++++||++|+..+++ .++++++.|+++..+|+.....+
T Consensus 90 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~-g~~~~i~~~sGs~a~~~al~---~l~~~gd~vl~~~~~h~~~~~~~ 165 (427)
T 2w8t_A 90 ALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY-GTTGAIVFSTGYMANLGIIS---TLAGKGEYVILDADSHASIYDGC 165 (427)
T ss_dssp HHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHH---HHSCTTCEEEEETTCCHHHHHHH
T ss_pred HHHHhCCCCcccccccCCcHHHHHHHHHHHHHh-CCCceEEecCcHHHHHHHHH---HhcCCCCEEEECCcccHHHHHHH
Confidence 9987 43222 24678889999999988 56788999999999999998 45666666667777777665555
Q ss_pred HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCC-CeEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Q 011959 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG-EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 278 (474)
Q Consensus 200 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~-~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~ 278 (474)
...|. +++.++++|+++|+++++++++ ++++|++++++|++|.+.+ +++|+++|++
T Consensus 166 ~~~g~-------------------~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~ 222 (427)
T 2w8t_A 166 QQGNA-------------------EIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKK 222 (427)
T ss_dssp HHSCS-------------------EEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHH
T ss_pred HHcCC-------------------eeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHH
Confidence 44332 3567778899999999986543 6899999999999999998 9999999999
Q ss_pred hCCEEEEeccccCcccC--CCccccccCCCCc----eeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChH
Q 011959 279 NGALLIFDEVMTGFRLA--YGGAQEYFGVTPD----LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352 (474)
Q Consensus 279 ~g~llI~DEv~~g~r~g--~~~~~~~~g~~pd----i~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~ 352 (474)
||++||+||+|+++..+ ..+..+++++.+| +.||||+++ ++.||+++++++++.+......+. .+++.|++
T Consensus 223 ~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~-~~~~~~~~ 299 (427)
T 2w8t_A 223 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYI-FTASLPPS 299 (427)
T ss_dssp TTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHH-SSCCCCHH
T ss_pred cCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc--cCCCEEEeCHHHHHHHHHhccccc-ccCCCCHH
Confidence 99999999999876222 2334566777666 568999996 456999999999998874322222 35678999
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee-eceeEEEEEecCCCcCcccccccchHHHHHH
Q 011959 353 AMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARF 430 (474)
Q Consensus 353 ~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 430 (474)
.++++.++|+.+++ ++++++++++++++++.|+++ ++.....+ .|.++++.+.+ .....++
T Consensus 300 ~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~-------------~~~~~~l 362 (427)
T 2w8t_A 300 VVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM----GFRLGTETCDSAIVAVMLED-------------QEQAAMM 362 (427)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH----TCEESCSSCCSSEEEEEESS-------------HHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc----CCcccCCCCCCCEEEEEECC-------------HHHHHHH
Confidence 99999999998876 678899999999999999876 22221133 67788887732 2334678
Q ss_pred HHHHHHCCeEecccCC-------cceEEecC--CcHHHHHHHHHHHHHHHhh
Q 011959 431 YRGMLEEGVYFAPSQF-------EAGFTSLA--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 431 ~~~l~~~Gv~v~~~~~-------~~~~~~~~--~t~e~i~~~l~~l~~~~~~ 473 (474)
.+.|+++||++.++.. ..+|+++. +|++++++++++|++++++
T Consensus 363 ~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~ 414 (427)
T 2w8t_A 363 WQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRA 414 (427)
T ss_dssp HHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999987642 35677644 6999999999999998864
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-40 Score=332.07 Aligned_cols=356 Identities=11% Similarity=0.019 Sum_probs=257.7
Q ss_pred CCCCeEEEeeccCEEEEcC--CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC-CCCHHHHHHHHHHHhhCC-
Q 011959 79 GGQPIVFDSVKGSHMWDID--GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP- 153 (474)
Q Consensus 79 ~~~p~~~~~~~G~~~~d~d--G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~-~~~~~~~~la~~l~~~~~- 153 (474)
+..+++..+++|+++||.+ |++||||..+ ++..+.+|+|++++.++++++. .|+ ...+++.++++++.+.++
T Consensus 39 ~~~~~~~~~g~g~~~~d~~~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~ 115 (421)
T 3l8a_A 39 DFTTRPDRLNQFTYKWKTSENNPELLQMWVA---DMDFLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDY 115 (421)
T ss_dssp CCSCCCCCTTTTBTTTGGGTTCTTCEECCSS---CCCSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCC
T ss_pred cCCcccccCCCCCccccccCCCCCeeecccC---CCCCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCC
Confidence 3347788999999999999 8999999777 5556689999999999998743 232 236778899999988764
Q ss_pred --CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC
Q 011959 154 --SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (474)
Q Consensus 154 --~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 231 (474)
..++|+|++||++|++.+++.+ ...+++||+.+++||+....+.. .|..+...++....+ .+. .
T Consensus 116 ~~~~~~v~~~~g~~ea~~~a~~~~--~~~gd~Vi~~~~~y~~~~~~~~~-~g~~~~~~~~~~~~~--------~~~---~ 181 (421)
T 3l8a_A 116 AVVKEDILFIDGVVPAISIALQAF--SEKGDAVLINSPVYYPFARTIRL-NDHRLVENSLQIING--------RFE---I 181 (421)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHH--SCTEEEEEEEESCCHHHHHHHHH-TTEEEEEEECEEETT--------EEE---C
T ss_pred CCCHHHEEEcCCHHHHHHHHHHHh--cCCCCEEEECCCCcHHHHHHHHH-CCCEEEeccccccCC--------Cee---e
Confidence 4678999999999999999953 33457899999999996554433 333221111100000 111 1
Q ss_pred CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cc-----cccC
Q 011959 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQ-----EYFG 304 (474)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~-----~~~g 304 (474)
|+++|++.+++ +++++|++++++|++|.+++ ++++++|+++|++||++||+||+|++| ++|... .. ++.+
T Consensus 182 d~~~le~~i~~--~~~~~vil~~p~nptG~~~~-~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 258 (421)
T 3l8a_A 182 DFEQLEKDIID--NNVKIYLLCSPHNPGGRVWD-NDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKD 258 (421)
T ss_dssp CHHHHHHHHHH--TTEEEEEEESSBTTTTBCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGG
T ss_pred CHHHHHHHhhc--cCCeEEEECCCCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcC
Confidence 89999999974 26899999999999996655 555999999999999999999999999 776422 11 1234
Q ss_pred CCCceeehhhhcC-CCcceEEEEec-HHHHHhhcCCCCcc-cccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHH
Q 011959 305 VTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMY-QAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGE 379 (474)
Q Consensus 305 ~~pdi~t~sK~l~-~G~~iG~~~~~-~~i~~~~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~ 379 (474)
..+++.++||+++ +|+|+||++++ +++++.+.. .. ..+++++|+++++++.++|+..++ ++..++++++.++
T Consensus 259 ~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~---~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~ 335 (421)
T 3l8a_A 259 FTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQY---RQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKL 335 (421)
T ss_dssp TEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHH---HHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeChhhccCchhheEeEEcCCHHHHHHHHH---HHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4466779999998 89999999998 899888763 22 334568999999999999985332 3445555555666
Q ss_pred HHHHHHHHhhhcCCeeEEeeeceeEE-EEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC------CcceEE
Q 011959 380 LTQGIIDAGKKAGHAICGGYISGMFG-FFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFT 451 (474)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~~~g~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~~~ 451 (474)
+++.|++. +.+..+++.|.++. +++..... ...++.+.|++ +||++.++. ...+|+
T Consensus 336 l~~~L~~~----~~i~~~~~~~~~~~~v~~~~~~~------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi 399 (421)
T 3l8a_A 336 VIKELEAK----TKIKVMEPEGTYLVWLDFSAYAI------------AQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARL 399 (421)
T ss_dssp HHHHHHHH----CSCEEECCSBSSEEEEECGGGTC------------CTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEE
T ss_pred HHHHHHhC----CCceEeCCCeeEEEEEeccccCC------------CHHHHHHHHHHhCCEEEECchhhCCCCCCEEEE
Confidence 66655543 33445666777665 66643110 01467788875 599998742 356799
Q ss_pred ecCCcHHHHHHHHHHHHHHHhh
Q 011959 452 SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 452 ~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++.+++++|++++++|++++++
T Consensus 400 ~~~~~~~~i~~~l~~l~~~l~~ 421 (421)
T 3l8a_A 400 NVATPKNTVQEALSRIISVFGK 421 (421)
T ss_dssp ECCSCHHHHHHHHHHHHHHC--
T ss_pred EecCCHHHHHHHHHHHHHHHhC
Confidence 8889999999999999998753
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=306.21 Aligned_cols=342 Identities=18% Similarity=0.250 Sum_probs=263.5
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCC-CCCHHHHHHHHHHHHhcC-C-----C-CCCCHHHHHHHHHHHhhCC
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGETMKKGT-S-----F-GAPCLLENVLAEMVISAVP 153 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~-~-----~-~~~~~~~~~la~~l~~~~~ 153 (474)
+..+++++|+++|| +|++||||.++ +++| +++|++.+++.+++.+.. . + .+..+...+++++++++++
T Consensus 27 ~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~ 102 (399)
T 3tqx_A 27 ERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLG 102 (399)
T ss_dssp CCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHT
T ss_pred cccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHC
Confidence 66789999999999 99999999999 8899 689999999999997721 1 1 1245678899999998884
Q ss_pred CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCH
Q 011959 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (474)
Q Consensus 154 ~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~ 233 (474)
.++.++++||++|+..+++ .+.++++.|+++..+|+.+...+...|. +++.+|++|+
T Consensus 103 -~~~~i~~~sGt~a~~~~l~---~~~~~gd~v~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~ 159 (399)
T 3tqx_A 103 -TDDTILYSSCFDANGGLFE---TLLGPEDAIISDELNHASIIDGIRLCKA-------------------QRYRYKNNAM 159 (399)
T ss_dssp -CSEEEEESCHHHHHHTTHH---HHCCTTCEEEEETTCCHHHHHHHHSCCS-------------------EEEEECTTCT
T ss_pred -CCcEEEECchHHHHHHHHH---HhcCCCCEEEECCcccHHHHHHHHHcCC-------------------ceeEeCCCCH
Confidence 4567778889999999998 4556555566666666655554443332 3566677789
Q ss_pred HHHHHHHhcCCC---CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCC--C
Q 011959 234 SALENLFENNKG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGV--T 306 (474)
Q Consensus 234 ~~le~~l~~~~~---~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~--~ 306 (474)
++|++.++++.+ ++++|++++++|++|.+.+ +++|.++|++||++||+||+| .|+ ........+.+++ .
T Consensus 160 ~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 235 (399)
T 3tqx_A 160 GDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADR 235 (399)
T ss_dssp THHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTC
T ss_pred HHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCC
Confidence 999998876332 6899999999999999998 999999999999999999999 576 3222234566676 7
Q ss_pred Ccee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHH
Q 011959 307 PDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE-PGTYEYLNKITGELTQ 382 (474)
Q Consensus 307 pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~-~~-~~~~~~~~~~~~~l~~ 382 (474)
+|++ ++||+++ |++.||+++++++++.+......+. .+.+.+++.++++.++++.+ +. ++..++++++.+++.+
T Consensus 236 ~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 313 (399)
T 3tqx_A 236 VDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYL-FSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRA 313 (399)
T ss_dssp CSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHH-SSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCccee-ccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 7887 8999998 7788999999999988864211122 24477899999999999987 43 6788888899999999
Q ss_pred HHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-------cceEEec--
Q 011959 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSL-- 453 (474)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~~~~-- 453 (474)
.|+++. ..+ .++.|.++++.+.. .....++.+.|+++||++.++.+ ..+|+++
T Consensus 314 ~L~~~g--~~~---~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~ 375 (399)
T 3tqx_A 314 GMEKLG--FQL---VPGNHPIIPVMLGD-------------AQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSA 375 (399)
T ss_dssp HHHHHT--CCB---CCCSSSEEEEEEEC-------------HHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCT
T ss_pred HHHHcC--CCc---CCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeec
Confidence 988762 222 25678888887742 23346889999999999986532 3567765
Q ss_pred CCcHHHHHHHHHHHHHHHhhC
Q 011959 454 AHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 454 ~~t~e~i~~~l~~l~~~~~~~ 474 (474)
.+|++++++++++|+++++++
T Consensus 376 ~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 376 VHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 589999999999999998764
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=298.35 Aligned_cols=343 Identities=19% Similarity=0.262 Sum_probs=260.0
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHh-cCCCCC------CCHHHHHHHHHHHhhC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSFGA------PCLLENVLAEMVISAV 152 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~~~~------~~~~~~~la~~l~~~~ 152 (474)
.|..+.+++|+++||.+|++||||.++ +++|+ ++|++++++.+++.+ +..++. ......+|.+.+++++
T Consensus 27 ~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 103 (401)
T 1fc4_A 27 EERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL 103 (401)
T ss_dssp CCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH
T ss_pred eeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh
Confidence 378889999999999999999999999 78997 899999999999876 332211 2566788999999888
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC
Q 011959 153 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 153 ~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 232 (474)
+ .++.+++++|++|++.+++. +.++++.|++...+|+.....+...|. +++.++.+|
T Consensus 104 g-~~~~i~~~sGs~a~~~~~~~---~~~~gd~v~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d 160 (401)
T 1fc4_A 104 G-MEDAILYSSCFDANGGLFET---LLGAEDAIISDALNHASIIDGVRLCKA-------------------KRYRYANND 160 (401)
T ss_dssp T-CSEEEEESCHHHHHHTTHHH---HCCTTCEEEEETTCCHHHHHHHHTSCS-------------------EEEEECTTC
T ss_pred C-CCcEEEeCChHHHHHHHHHH---HcCCCCEEEEcchhHHHHHHHHHHcCC-------------------ceEEECCCC
Confidence 4 34677888899999999884 455555666666667654444333222 355666779
Q ss_pred HHHHHHHHhcCCC---CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-c-cCCCccccccCCC
Q 011959 233 VSALENLFENNKG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-R-LAYGGAQEYFGVT 306 (474)
Q Consensus 233 ~~~le~~l~~~~~---~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r-~g~~~~~~~~g~~ 306 (474)
+++|++.+++.++ ++++|++++++|++|.+.+ +++|.++|++||++||+||+| .|+ . .+..+ .+++++.
T Consensus 161 ~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~ 235 (401)
T 1fc4_A 161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEYCDVM 235 (401)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHHTTCT
T ss_pred HHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHHcCCC
Confidence 9999999875221 5789999999999999998 999999999999999999999 588 3 44432 3445554
Q ss_pred C--cee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 011959 307 P--DLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELT 381 (474)
Q Consensus 307 p--di~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~ 381 (474)
+ |++ ++||+++++. .||+++++++++.+...... ...+++.|+++++++.++|+.+++ +++.++++++++++.
T Consensus 236 ~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~ 313 (401)
T 1fc4_A 236 GRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRP-YLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFR 313 (401)
T ss_dssp TCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHH-HHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcC-ceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4 666 8999996554 59999999999888632111 223668899999999999998765 577888888999999
Q ss_pred HHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-------cceEEecC
Q 011959 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLA 454 (474)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~~~~~ 454 (474)
+.|++. ...+ .++.|.++++.+.+ .....++.+.|.++||++.++.. ..+|+++.
T Consensus 314 ~~L~~~--g~~~---~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~ 375 (401)
T 1fc4_A 314 EQMSAA--GFTL---AGADHAIIPVMLGD-------------AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMS 375 (401)
T ss_dssp HHHHHT--TCCB---CCSSSSEEEEEEEC-------------HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECC
T ss_pred HHHHHc--CCcc---cCCCCCEEEEEcCC-------------hHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeC
Confidence 888875 2222 24678888887742 12346788899999999987642 24777654
Q ss_pred --CcHHHHHHHHHHHHHHHhhC
Q 011959 455 --HSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 455 --~t~e~i~~~l~~l~~~~~~~ 474 (474)
+|++++++++++|+++++++
T Consensus 376 ~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 376 AAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 79999999999999998763
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=296.87 Aligned_cols=356 Identities=12% Similarity=0.084 Sum_probs=255.2
Q ss_pred eEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCCC-CCHHHHHHHHHHHhhCC---CCCe
Q 011959 83 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA-PCLLENVLAEMVISAVP---SIEM 157 (474)
Q Consensus 83 ~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~-~~~~~~~la~~l~~~~~---~~~~ 157 (474)
++..+++|+++||.+|++||||..+ ++..+.+|.|++++.+++.++. .|+. ..+++.++++++.+.++ ..++
T Consensus 11 ~~~~~~~g~~~~d~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~ 87 (391)
T 3dzz_A 11 HVPKRQGNSIKWGVLKEKELPMWIA---EMDFKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDW 87 (391)
T ss_dssp SCCCCCTTBTTTTTCCTTCEECCSS---CCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGG
T ss_pred hhccCCCCccceeccCCCceecccc---CCCCCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6678999999999999999999987 5555589999999999998742 2322 45678889999988764 4689
Q ss_pred EEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHH
Q 011959 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (474)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le 237 (474)
|++++||++|++.+++.. ..++++|++.+++||+....+ ...|..+..++.....+ .+. .|+++|+
T Consensus 88 i~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~--------~~~---~d~~~l~ 153 (391)
T 3dzz_A 88 CVFASGVVPAISAMVRQF--TSPGDQILVQEPVYNMFYSVI-EGNGRRVISSDLIYENS--------KYS---VNWADLE 153 (391)
T ss_dssp EEEESCHHHHHHHHHHHH--SCTTCEEEECSSCCHHHHHHH-HHTTCEEEECCCEEETT--------EEE---CCHHHHH
T ss_pred EEECCCHHHHHHHHHHHh--CCCCCeEEECCCCcHHHHHHH-HHcCCEEEEeeeeecCC--------cee---ecHHHHH
Confidence 999999999999999953 345678999899998855443 33343322211100011 011 2899999
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-CccccccCC-CCc----ee
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGV-TPD----LT 310 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~-~pd----i~ 310 (474)
+.+++. ++++|+++.++|++|.+.+..+ +++|+++|++||++||+||+|++| +.|. ......++. .+| +.
T Consensus 154 ~~l~~~--~~~~v~i~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~ 230 (391)
T 3dzz_A 154 EKLATP--SVRMMVFCNPHNPIGYAWSEEE-VKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLI 230 (391)
T ss_dssp HHHTST--TEEEEEEESSBTTTTBCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEE
T ss_pred HHHhcc--CceEEEEECCCCCCCcccCHHH-HHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEE
Confidence 999742 6788888888888998876555 999999999999999999999988 6653 333333332 267 45
Q ss_pred ehhhhcC-CCcceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHH
Q 011959 311 TLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIID 386 (474)
Q Consensus 311 t~sK~l~-~G~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~ 386 (474)
++||+++ +|+|+||++++ +++++.+... ....++++.|+++++++.++|+...+ ++..++++++.+++.+.|++
T Consensus 231 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 308 (391)
T 3dzz_A 231 SPSKTFNLAALHAACAIIPNPDLRARAEES--FFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAK 308 (391)
T ss_dssp CSHHHHTCTTTCCEEEECCSHHHHHHHHHH--HHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eChhhccccchhheEEEECCHHHHHHHHHH--HHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999998 89999999997 8898887631 12244678899999999999986322 44555666666666666665
Q ss_pred HhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHH
Q 011959 387 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDD 459 (474)
Q Consensus 387 ~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~ 459 (474)
... ++....+..+.++++.+.... ....++.+.|+ ++||++.++. ...+|+++.+++++
T Consensus 309 ~~~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~ 374 (391)
T 3dzz_A 309 EVP--EVKVLDSNASYLAWVDISALG------------MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKEL 374 (391)
T ss_dssp HCT--TSEECCCCBSSEEEEECGGGC------------SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHH
T ss_pred hCC--CcEEeccCceEEEEEehhhcC------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHH
Confidence 321 222222233444556653210 01257888886 8899998753 24578988899999
Q ss_pred HHHHHHHHHHHHhhC
Q 011959 460 IQHTITAAEKVLRQI 474 (474)
Q Consensus 460 i~~~l~~l~~~~~~~ 474 (474)
+++++++|+++++++
T Consensus 375 i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 375 VIDGMQRLKQGVLNL 389 (391)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=297.43 Aligned_cols=343 Identities=13% Similarity=0.053 Sum_probs=245.6
Q ss_pred EEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCC-CCCHHHHHHHHHHHhhCC---CCCeE
Q 011959 84 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG-APCLLENVLAEMVISAVP---SIEMV 158 (474)
Q Consensus 84 ~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~-~~~~~~~~la~~l~~~~~---~~~~v 158 (474)
...+++|+++||.+|++||||.++. +.+ ..+|+|++++.+++.++ ..|+ ...+++.++++++.+.++ ..+++
T Consensus 8 ~~~~~~g~~~~d~~g~~~idl~~~~--~~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~lr~~la~~~~~~~~~~~~~~~i 84 (377)
T 3fdb_A 8 EDLRARNTMKWTRYGQGVLPLWVAE--SDF-STCPAVLQAITDAVQREAFGYQPDGSLLSQATAEFYADRYGYQARPEWI 84 (377)
T ss_dssp HHHHHTCCHHHHSSCTTSEECCSSC--CCS-CCCHHHHHHHHHHHHTTCCSSCCSSCCHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HHhcCCCCceeeccCCCeeeecccC--CCC-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHE
Confidence 3458999999999999999999883 334 48999999999999873 2232 126778888888876543 46799
Q ss_pred EEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC---CHHH
Q 011959 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN---DVSA 235 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~---d~~~ 235 (474)
++++||++|++.+++.. ..++++|++..++||++...+. ..|..+ ..+|.+ |+++
T Consensus 85 ~~t~g~~~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~-~~g~~~-------------------~~~~~~~~~d~~~ 142 (377)
T 3fdb_A 85 FPIPDVVRGLYIAIDHF--TPAQSKVIVPTPAYPPFFHLLS-ATQREG-------------------IFIDATGGINLHD 142 (377)
T ss_dssp EEESCHHHHHHHHHHHH--SCTTCCEEEEESCCTHHHHHHH-HHTCCE-------------------EEEECTTSCCHHH
T ss_pred EEeCChHHHHHHHHHHh--cCCCCEEEEcCCCcHhHHHHHH-HcCCEE-------------------EEccCCCCCCHHH
Confidence 99999999999999952 3356789999999998654433 334322 222222 8999
Q ss_pred HHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC-C-Ccc---ccccCCCCce
Q 011959 236 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-Y-GGA---QEYFGVTPDL 309 (474)
Q Consensus 236 le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~-~~~---~~~~g~~pdi 309 (474)
|++.++++ +++++++.++|++|.+.+.++ +++|+++|++||++||+||+|++| +.+ . ... ....+..+++
T Consensus 143 l~~~l~~~---~~~v~i~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 218 (377)
T 3fdb_A 143 VEKGFQAG---ARSILLCNPYNPLGMVFAPEW-LNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITI 218 (377)
T ss_dssp HHHHHHTT---CCEEEEESSBTTTTBCCCHHH-HHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEE
T ss_pred HHHHhccC---CCEEEEeCCCCCCCCCCCHHH-HHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEE
Confidence 99999853 456666555888898876555 999999999999999999999988 655 2 111 1112233456
Q ss_pred eehhhhcC-CCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHH
Q 011959 310 TTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGII 385 (474)
Q Consensus 310 ~t~sK~l~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~ 385 (474)
.++||++| +|+|+||++. ++++++.+.. .....+++.|+++++++.++|+..++ ++..++++++.+++.+.|+
T Consensus 219 ~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 295 (377)
T 3fdb_A 219 TAPSKAWNIAGLKCAQIIFSNPSDAEHWQQ---LSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIP 295 (377)
T ss_dssp ECSTTTTTCGGGCCEEEECCSHHHHHHHHH---SCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeChHhccCcchhheEEEeCCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999997 7999998865 7888888863 33445678899999999999986432 4455666666666766666
Q ss_pred HHhhhcCCeeEEeeecee-EEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC------CcceEEecCCcH
Q 011959 386 DAGKKAGHAICGGYISGM-FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSS 457 (474)
Q Consensus 386 ~~~~~~~~~~~v~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------~~~~~~~~~~t~ 457 (474)
+... ++ ....+.+.+ +++.+...... .++.+.|+++ ||++.++. ...+|+++..++
T Consensus 296 ~~~~--~~-~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~ 359 (377)
T 3fdb_A 296 KRIP--GA-KITPMQATYLMWIDFRDTTIE-------------GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSR 359 (377)
T ss_dssp HHST--TC-EECCCSBCSEEEEECTTSCCC-------------SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCH
T ss_pred hhCC--Cc-eEecCCeeEEEEEECcccCCC-------------HHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCH
Confidence 5321 22 223344444 46666431110 2456677765 99998763 346789888899
Q ss_pred HHHHHHHHHHHHHHhhC
Q 011959 458 DDIQHTITAAEKVLRQI 474 (474)
Q Consensus 458 e~i~~~l~~l~~~~~~~ 474 (474)
+++++++++|+++++++
T Consensus 360 e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 360 EVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998763
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=285.35 Aligned_cols=340 Identities=19% Similarity=0.234 Sum_probs=255.8
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHhcC-CC------CCCCHHHHHHHHHHHhhC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SF------GAPCLLENVLAEMVISAV 152 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~-~~------~~~~~~~~~la~~l~~~~ 152 (474)
.|+++++++|+++| .+|+++|||.++ +++|+ .+|.+.+++.+++++.. .+ .+..++..++++++++++
T Consensus 26 ~~~~~~~~~g~~~~-~~g~~~idl~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 101 (398)
T 3a2b_A 26 YFRPIQSKQDTEVK-IDGRRVLMFGSN---SYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYV 101 (398)
T ss_dssp SSCCBCSCSSSEEE-ETTEEEEECSCS---CTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH
T ss_pred ceeeecCCCCceEE-ECCceEEEeecc---cccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHh
Confidence 37889999999999 999999999998 55888 79999999999987632 11 124688899999999988
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC
Q 011959 153 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 153 ~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 232 (474)
+.+++++++||++|++.+++. +.++++.|++...+|+.+...+...|. +++.+|..|
T Consensus 102 -g~~~v~~~~ggt~a~~~~~~~---~~~~gd~V~~~~p~~~~~~~~~~~~g~-------------------~~~~v~~~d 158 (398)
T 3a2b_A 102 -GKEAAILFSTGFQSNLGPLSC---LMGRNDYILLDERDHASIIDGSRLSFS-------------------KVIKYGHNN 158 (398)
T ss_dssp -TCSEEEEESSHHHHHHHHHHH---SSCTTCEEEEETTCCHHHHHHHHHSSS-------------------EEEEECTTC
T ss_pred -CCCcEEEECCHHHHHHHHHHH---HhCCCCEEEECCccCHHHHHHHHHcCC-------------------ceEEeCCCC
Confidence 457999999999999999994 445555555555556655555554443 245566679
Q ss_pred HHHHHHHHhcCCC-CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc---ccCCCccccccCCC--
Q 011959 233 VSALENLFENNKG-EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVT-- 306 (474)
Q Consensus 233 ~~~le~~l~~~~~-~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~---r~g~~~~~~~~g~~-- 306 (474)
+++|++.++++.+ ++++|++++++|++|.+.+ +++|.++|++||++||+||+|..+ +.+.. ..+.+++.
T Consensus 159 ~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~ 233 (398)
T 3a2b_A 159 MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAG-TASHFGLNDD 233 (398)
T ss_dssp HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCC-HHHHHTCGGG
T ss_pred HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCc-hHhhcCCCcC
Confidence 9999999986432 6789999999999999988 999999999999999999999644 22222 23445553
Q ss_pred Ccee--ehhhhcCC-CcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 011959 307 PDLT--TLGKIIGG-GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQ 382 (474)
Q Consensus 307 pdi~--t~sK~l~~-G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~ 382 (474)
+|++ ++||.++. | ||+++++++++.+..... .+..+...++..++++.++|+.++. ++..++++++++++.+
T Consensus 234 ~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 309 (398)
T 3a2b_A 234 VDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNAR-SVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKA 309 (398)
T ss_dssp CSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCH-HHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred CeEEEecccccccCCC---cEEEeCHHHHHHHHHhcc-cceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 5777 89999983 5 999999999888763111 1233445667666677788887644 5788888899999999
Q ss_pred HHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-------cceEEecC-
Q 011959 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLA- 454 (474)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~~~~~- 454 (474)
.|+++ ...+ .++.|.++++.+.. .....++.+.|+++||++.++.. ..+|+++.
T Consensus 310 ~L~~~--g~~~---~~~~g~~~~~~~~~-------------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~ 371 (398)
T 3a2b_A 310 QLLDH--GFDL---GATESPILPIFIRS-------------NEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMA 371 (398)
T ss_dssp HHHHT--TCCB---CSCCSSEEEEECCC-------------HHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCT
T ss_pred HHHhc--CCCc---CCCCCCEEEEEcCC-------------HHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeC
Confidence 98875 2222 23457888877631 22346788999999999988642 35788766
Q ss_pred -CcHHHHHHHHHHHHHHHhhC
Q 011959 455 -HSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 455 -~t~e~i~~~l~~l~~~~~~~ 474 (474)
++++++++++++|+++++++
T Consensus 372 ~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 372 THTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 59999999999999998753
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=297.24 Aligned_cols=333 Identities=15% Similarity=0.109 Sum_probs=250.8
Q ss_pred EeeccCEEEEcCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHhc-CCC------CCCCHHHHHHHHHHHhhCCCCCe
Q 011959 86 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAVPSIEM 157 (474)
Q Consensus 86 ~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~-~~~------~~~~~~~~~la~~l~~~~~~~~~ 157 (474)
.++.+.+++|.+|++||||.++ +++|+ .||+|++++.+++++. ..+ .+..+...++++++++++ +.+.
T Consensus 46 ~~~~~~~~~~~~g~~~ld~~s~---~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~~~ 121 (409)
T 3kki_A 46 KNGKHLVLGKQASPDDIILQSN---DYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT-GFDE 121 (409)
T ss_dssp TTSSCTTCCCCCCTTSEECCCS---CTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH-TCSE
T ss_pred cCCCeeeeCCCCCCceEEeecc---CccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh-CCCe
Confidence 3567778888999999999988 88888 6999999999999872 111 122344566777777777 5567
Q ss_pred EEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHH
Q 011959 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (474)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le 237 (474)
.++++||++|+..+++ ++.++++.|+++..+|+.+...+...|. +++.++.+|+++|+
T Consensus 122 ~i~~~sGt~a~~~~l~---~~~~~gd~Vl~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~~~le 179 (409)
T 3kki_A 122 CLLSQSGWNANVGLLQ---TICQPNTNVYIDFFAHMSLWEGARYANA-------------------QAHPFMHNNCDHLR 179 (409)
T ss_dssp EEEESCHHHHHHHHHH---HHCCTTCEEEEETTSCHHHHHHHHHTTC-------------------EEEEECTTCHHHHH
T ss_pred EEEecchHHHHHHHHH---HhcCCCCEEEECCCcCHHHHHHHHHcCC-------------------eEEEecCCCHHHHH
Confidence 7888999999999998 5566666666777777766655554443 34556667999999
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--c-ccCCCccccccCC--CCce--e
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG--F-RLAYGGAQEYFGV--TPDL--T 310 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~-r~g~~~~~~~~g~--~pdi--~ 310 (474)
++++++ ++++|++++++|++|.+.+ +++|+++|++||++||+||+|++ + +.|..+. +.+++ .+|+ .
T Consensus 180 ~~l~~~--~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~ 252 (409)
T 3kki_A 180 MLIQRH--GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTA 252 (409)
T ss_dssp HHHHHH--CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEE
T ss_pred HHHHhc--CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEe
Confidence 999853 3589999999999999998 99999999999999999999987 5 4554433 45666 4566 5
Q ss_pred ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhh
Q 011959 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGK 389 (474)
Q Consensus 311 t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~ 389 (474)
|+||++++| .|++++++++++.+......+.. +.+.++++++++.++++.+++ +++.++++++++++++.|+++
T Consensus 253 s~sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 327 (409)
T 3kki_A 253 SLAKTFAYR--AGAIWCNNEVNRCVPFISYPAIF-SSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-- 327 (409)
T ss_dssp ESSSTTCSS--CEEEEESSSGGGTHHHHCHHHHH-SBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--
T ss_pred ecchhhCCC--ceEEEECHHHHHHHHHhCcCccc-cCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--
Confidence 899999965 69999999988877532112222 234788999999999998765 567788888888888888765
Q ss_pred hcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-------CcceEEec--CCcHHHH
Q 011959 390 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSL--AHSSDDI 460 (474)
Q Consensus 390 ~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~~~~--~~t~e~i 460 (474)
++. +.+.+.++++.+.. .....++.+.|+++||++.+.. ...+|+++ .+|+++|
T Consensus 328 --g~~--~~~~~~~~~~~~~~-------------~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i 390 (409)
T 3kki_A 328 --GLT--IRSESQIIGLETGD-------------ERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQI 390 (409)
T ss_dssp --TCC--CCCSSSEEEEEEES-------------HHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHH
T ss_pred --CCc--cCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHH
Confidence 221 23578888887742 1234578899999999986532 34567754 5799999
Q ss_pred HHHHHHHHHHHhh
Q 011959 461 QHTITAAEKVLRQ 473 (474)
Q Consensus 461 ~~~l~~l~~~~~~ 473 (474)
++++++|+++++.
T Consensus 391 ~~~~~~l~~~l~~ 403 (409)
T 3kki_A 391 AKIIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999864
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=285.34 Aligned_cols=337 Identities=17% Similarity=0.199 Sum_probs=252.8
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCC-CCCHHHHHHHHHHHHh-cCC-----CC-CCCHHHHHHHHHHHhhC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGETMKK-GTS-----FG-APCLLENVLAEMVISAV 152 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~~-~~~-----~~-~~~~~~~~la~~l~~~~ 152 (474)
.|+++.+++|+++| .+|++||||.++ .++| +.+|++++++.+++++ +.. +. +......++++.+++++
T Consensus 22 ~~~~~~~~~g~~~~-~~g~~~id~~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 97 (384)
T 1bs0_A 22 RRYPVAQGAGRWLV-ADDRQYLNFSSN---DYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL 97 (384)
T ss_dssp CCCCCSBCSSSEEE-ETTEEEEECSCC---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH
T ss_pred ccccccCCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh
Confidence 37888999999999 799999999998 5588 5899999999999876 321 11 24577889999999988
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC
Q 011959 153 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 153 ~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 232 (474)
+.++.++++||++|+..+++ .+.++++.|+++..+|+.+...+...|. +++.+|++|
T Consensus 98 -g~~~~i~~~sGt~a~~~~~~---~~~~~gd~v~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d 154 (384)
T 1bs0_A 98 -GYSRALLFISGFAANQAVIA---AMMAKEDRIAADRLSHASLLEAASLSPS-------------------QLRRFAHND 154 (384)
T ss_dssp -TCSEEEEESCHHHHHHHHHH---HHCCTTCEEEEETTCCHHHHHHHHTSSS-------------------EEEEECTTC
T ss_pred -CCCcEEEeCCcHHHHHHHHH---HhCCCCcEEEEcccccHHHHHHHHHcCC-------------------CEEEeCCCC
Confidence 44578888899999999998 4566666677777778766555544332 355667779
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--ccCCCccccccCCCCce
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVTPDL 309 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~~pdi 309 (474)
+++|++.+++.++++++|++++++|++|.+.+ +++|.++|++||++||+||+|. |+ +.+... .+.++..+|+
T Consensus 155 ~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~di 229 (384)
T 1bs0_A 155 VTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS-CWLQKVKPEL 229 (384)
T ss_dssp HHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH-HHHTTCCCSE
T ss_pred HHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCch-HHhcCCCCcE
Confidence 99999999865445789999999999999998 9999999999999999999995 43 233332 2456667888
Q ss_pred e--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Q 011959 310 T--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGI 384 (474)
Q Consensus 310 ~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L 384 (474)
+ ++||.++. +.||+++++++++.+...... ...+.+.|++.++++.++|+.+.+ ++..++++++++++.+.|
T Consensus 230 ~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 306 (384)
T 1bs0_A 230 LVVTFGKGFGV--SGAAVLCSSTVADYLLQFARH-LIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGV 306 (384)
T ss_dssp EEEESSSTTSS--CCEEEEECHHHHHHHHHHCHH-HHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeccchhhc--cCcEEEeCHHHHHHHHHhchh-hhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 7 89999983 349999999998887632111 223447899999999999988763 456677777777777777
Q ss_pred HHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-------cceEEec--CC
Q 011959 385 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSL--AH 455 (474)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~~~~--~~ 455 (474)
+++ ++.. .++.|.++++.+.. .....++.+.|.++||.+.++.. ..+|+++ .+
T Consensus 307 ~~~----g~~~-~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~ 368 (384)
T 1bs0_A 307 QDL----PFTL-ADSCSAIQPLIVGD-------------NSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAH 368 (384)
T ss_dssp TTS----SCEE-CSCCSSBCCEEEES-------------HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTC
T ss_pred Hhc----CCcc-cCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCC
Confidence 653 3221 13567777777631 12346788999999999987642 3466654 45
Q ss_pred cHHHHHHHHHHHHHH
Q 011959 456 SSDDIQHTITAAEKV 470 (474)
Q Consensus 456 t~e~i~~~l~~l~~~ 470 (474)
|++++++++++|+++
T Consensus 369 ~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 369 EMQDIDRLLEVLHGN 383 (384)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999875
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=278.77 Aligned_cols=352 Identities=13% Similarity=0.071 Sum_probs=229.6
Q ss_pred eEEEeeccCEEEEcCCC-----EEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCCC-CCH-HHHHHHHHHHhhCC-
Q 011959 83 IVFDSVKGSHMWDIDGN-----EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA-PCL-LENVLAEMVISAVP- 153 (474)
Q Consensus 83 ~~~~~~~G~~~~d~dG~-----~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~-~~~-~~~~la~~l~~~~~- 153 (474)
++-.+++|+++||.+|+ ++|||..+. +.++ .+|+|.+++.+++++. ..|+. ..+ ++.++++++.+.++
T Consensus 7 ~~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~ 83 (390)
T 1d2f_A 7 VVDRHGTWCTQWDYVADRFGTADLLPFTISD--MDFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYT 83 (390)
T ss_dssp -----------------------CEECCSSS--CSSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCC
T ss_pred cccccCCCccchhhhccccCCCCeeEeeecC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCC
Confidence 44578999999999998 789998774 3466 7899999999998753 22321 456 88888888877653
Q ss_pred --CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC
Q 011959 154 --SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (474)
Q Consensus 154 --~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 231 (474)
..++|++++||++|++.+++.. ..++++|++.+++||++...+. ..|..+..++.....+ .+. .
T Consensus 84 ~~~~~~v~~t~g~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~--------~~~---~ 149 (390)
T 1d2f_A 84 AIDSQTVVYGPSVIYMVSELIRQW--SETGEGVVIHTPAYDAFYKAIE-GNQRTVMPVALEKQAD--------GWF---C 149 (390)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHS--SCTTCEEEEEESCCHHHHHHHH-HTTCEEEEEECEECSS--------SEE---C
T ss_pred CCCHHHEEEcCCHHHHHHHHHHHh--cCCCCEEEEcCCCcHHHHHHHH-HCCCEEEEeecccCCC--------ccc---c
Confidence 4678999999999999999952 2345789999999999655443 3343222211100000 000 3
Q ss_pred CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCC---
Q 011959 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP--- 307 (474)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~p--- 307 (474)
|+++|++.+++. ++++|+++.++|++|.+.+. +++++|.++|++||++||+||+|++| +.|.... ...++.+
T Consensus 150 d~~~l~~~l~~~--~~~~v~l~~p~nptG~~~~~-~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~~ 225 (390)
T 1d2f_A 150 DMGKLEAVLAKP--ECKIMLLCSPQNPTGKVWTC-DELEIMADLCERHGVRVISDEIHMDMVWGEQPHI-PWSNVARGDW 225 (390)
T ss_dssp CHHHHHHHHTST--TEEEEEEESSCTTTCCCCCT-THHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC-CGGGTCCSSE
T ss_pred CHHHHHHHhccC--CCeEEEEeCCCCCCCcCcCH-HHHHHHHHHHHHcCCEEEEEccccccccCCCCCc-CHHHcchhhH
Confidence 899999999743 57777776667888988765 45999999999999999999999988 6554221 1122222
Q ss_pred c-eeehhhhcC-CCcceEEEEec-HHHHHhhcCCCCccc-ccCC-CCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHH
Q 011959 308 D-LTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQ-AGTL-SGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGEL 380 (474)
Q Consensus 308 d-i~t~sK~l~-~G~~iG~~~~~-~~i~~~~~~~~~~~~-~~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l 380 (474)
| +.++||.++ +|+|+||++++ +++++.+.. ... ..++ +.|+++++++.++|+..++ +...++++++.+++
T Consensus 226 d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l 302 (390)
T 1d2f_A 226 ALLTSGSKSFNIPALTGAYGIIENSSSRDAYLS---ALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYI 302 (390)
T ss_dssp EEEECSHHHHTCGGGCCEEEEECSHHHHHHHHH---HHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hhccCccHhhcccChhheEEEECCHHHHHHHHH---HHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3 779999999 89999999885 788887762 223 3455 7799999999999875322 33444555555666
Q ss_pred HHHHHHHhhhcCCeeEEeeece-eEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEe
Q 011959 381 TQGIIDAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTS 452 (474)
Q Consensus 381 ~~~L~~~~~~~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~ 452 (474)
.+.|++. ++....+++.|. ++++.+.... ....++.+.|+ ++||++.++. ...+|++
T Consensus 303 ~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris 367 (390)
T 1d2f_A 303 ADKMNAA---FPELNWQIPQSTYLAWLDLRPLN------------IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLN 367 (390)
T ss_dssp HHHHHHH---CSSCCCCCCSBCSEEEEECGGGC------------CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEE
T ss_pred HHHHHhh---CCCCEEecCCccEEEEEEccccC------------CCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEE
Confidence 6665542 221222344454 4466663210 01256888888 6899998763 2467998
Q ss_pred cCCcHHHHHHHHHHHHHHHhh
Q 011959 453 LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+..+++++++++++|++++++
T Consensus 368 ~~~~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 368 AGCPRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHHHHh
Confidence 888999999999999999875
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=286.03 Aligned_cols=352 Identities=12% Similarity=0.065 Sum_probs=247.1
Q ss_pred CeEEEeeccCEEEEcCCCEE-----EeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC-CCCHHHHHHHHHHHhhCC-
Q 011959 82 PIVFDSVKGSHMWDIDGNEY-----IDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP- 153 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~-----iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~-~~~~~~~~la~~l~~~~~- 153 (474)
.++..+++|+++||.+|++| |||..+ .+..+.+|+|++++.+++.+.. .|+ +..+++.++++++++.++
T Consensus 10 ~~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~ 86 (391)
T 4dq6_A 10 EIVDRSNNFSSKWSEMEKKYGTNDLLPMWVA---DMDFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNW 86 (391)
T ss_dssp SCCCCTTTTBHHHHCHHHHHSCSCSEECCSS---SCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCC
T ss_pred cccccccCCceeeeecccccCCCCceecccc---CCCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 45567899999999987555 999887 5555679999999999997642 222 356788999999998764
Q ss_pred --CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCC-CCCCCCCCCCCceEEccC
Q 011959 154 --SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSPGVPKGATYETLTAPF 230 (474)
Q Consensus 154 --~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~-~~~g~~~~~~~~~~~~~~ 230 (474)
+.+++++++||++|++.+++.. ..++++|++.+++||+....+. ..|..+..++.. ...+ .+.+
T Consensus 87 ~~~~~~v~~~~g~~~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~--------~~~~-- 153 (391)
T 4dq6_A 87 KIKSEWLIYSPGVIPAISLLINEL--TKANDKIMIQEPVYSPFNSVVK-NNNRELIISPLQKLENG--------NYIM-- 153 (391)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHH--SCTTCEEEECSSCCTHHHHHHH-HTTCEEEECCCEECTTS--------CEEC--
T ss_pred CCcHHHeEEcCChHHHHHHHHHHh--CCCCCEEEEcCCCCHHHHHHHH-HcCCeEEeeeeeecCCC--------ceEe--
Confidence 4679999999999999999953 3456789999999998654433 334333222111 0011 1111
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-ccccc-----
Q 011959 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF----- 303 (474)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~----- 303 (474)
|+++|++.+++ +++|+++.++|++|.+.+..+ +++|+++|++||++||+||+|++| +.|... ....+
T Consensus 154 -d~~~l~~~l~~----~~~v~i~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 227 (391)
T 4dq6_A 154 -DYEDIENKIKD----VKLFILCNPHNPVGRVWTKDE-LKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFE 227 (391)
T ss_dssp -CHHHHHHHCTT----EEEEEEESSBTTTTBCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred -eHHHHHHHhhc----CCEEEEECCCCCCCcCcCHHH-HHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCcccc
Confidence 89999999873 777888777888998876555 999999999999999999999988 655321 22111
Q ss_pred CCCCceeehhhhcC-CCcceEEEEecH-HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHH
Q 011959 304 GVTPDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGE 379 (474)
Q Consensus 304 g~~pdi~t~sK~l~-~G~~iG~~~~~~-~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~ 379 (474)
+....+.++||.++ +|+|+||+++++ ++++.+... ....++++.|+++++++.++|+..++ +...++++++.++
T Consensus 228 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 305 (391)
T 4dq6_A 228 KNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDA--FTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDF 305 (391)
T ss_dssp HTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHH--HHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHH--HHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 11233458999998 799999998875 888877631 12334668899999999999886321 3344555555556
Q ss_pred HHHHHHHHhhhcCCeeEEeeeceeE-EEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC------CcceEE
Q 011959 380 LTQGIIDAGKKAGHAICGGYISGMF-GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFT 451 (474)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------~~~~~~ 451 (474)
+.+.|++. .+....+++.+.++ ++.+.... ....++.+.|+++ ||++.++. ...+|+
T Consensus 306 l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi 370 (391)
T 4dq6_A 306 AIKYINEN---MPKLKVRKPEGTYLLWVDFSALG------------LSDEELESILVQKGKVALNQGNSFGIGGSGYQRI 370 (391)
T ss_dssp HHHHHHHH---CTTSEECCCSBSSEEEEECGGGC------------CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEE
T ss_pred HHHHHHhh---CCCCEecCCCccEEEEEEhhhcC------------CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEE
Confidence 66555543 22223334455544 46664211 0125788899988 99998752 246889
Q ss_pred ecCCcHHHHHHHHHHHHHHHh
Q 011959 452 SLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 452 ~~~~t~e~i~~~l~~l~~~~~ 472 (474)
++.++++++++++++|+++++
T Consensus 371 s~~~~~~~i~~~l~~l~~~l~ 391 (391)
T 4dq6_A 371 NLACPRSMLEEALIRIKNAIN 391 (391)
T ss_dssp ECCSCHHHHHHHHHHHHHHHC
T ss_pred EEcCCHHHHHHHHHHHHHHhC
Confidence 888999999999999999873
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=277.64 Aligned_cols=354 Identities=13% Similarity=0.058 Sum_probs=240.3
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHh----cCCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKK----GTSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEAC 168 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~----~~~~~~---~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~ 168 (474)
.+|||..+. ..+| .+|.+++++.+++++ ...|+. ..+++.++++++.+.++ +.+ +|++++||++|+
T Consensus 38 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~ 114 (429)
T 1yiz_A 38 KPLNLGQGF--PDYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 114 (429)
T ss_dssp CCEECCSSS--CSSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CEEEecCCC--CCCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence 578888875 3556 689999999999875 123322 34677788888876543 467 999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-CCHHHHHHHHhcCCCCe
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGEI 247 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~ 247 (474)
+.+++.. ...+++|++.+++||+....+ ...|..+..++....... .......+ .|+++|++.++ +++
T Consensus 115 ~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~l~~~l~---~~~ 183 (429)
T 1yiz_A 115 YATIQGH--VDEGDEVIIIEPFFDCYEPMV-KAAGGIPRFIPLKPNKTG-----GTISSADWVLDNNELEALFN---EKT 183 (429)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTTHHHHH-HHTTCEEEEEECBCCCSS-----SSEEGGGCBCCHHHHHHHCC---TTE
T ss_pred HHHHHHh--cCCCCEEEEcCCCchhHHHHH-HHcCCEEEEEeCCccccc-----ccccccCcccCHHHHHHHhc---cCc
Confidence 9999953 334678999999999965543 334443322211110000 00000111 38999999885 368
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-cccc----ccCCCCceeehhhhcC-CCc
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQE----YFGVTPDLTTLGKIIG-GGL 320 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~----~~g~~pdi~t~sK~l~-~G~ 320 (474)
++|++++++|++|.+.+ ++++++|+++|++||++||+||+|++| +.|.. .... ..+..+++.++||.++ +|+
T Consensus 184 ~~v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 262 (429)
T 1yiz_A 184 KMIIINTPHNPLGKVMD-RAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGW 262 (429)
T ss_dssp EEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred eEEEECCCCCCCCccCC-HHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCc
Confidence 88888888888998775 566999999999999999999999988 65531 1111 2334455678999999 799
Q ss_pred ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee
Q 011959 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (474)
|+||+++++++++.+. ......+++.|+++++++.++|+. ...+++.+++++..+..++.|.+.+.++++..
T Consensus 263 r~G~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 339 (429)
T 1yiz_A 263 KIGWAYGPEALLKNLQ---MVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNP 339 (429)
T ss_dssp CCEEEESCHHHHHHHH---HHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred ceEEEEeCHHHHHHHH---HHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999999998886 333456788999999999999987 43345555555444444444444433345444
Q ss_pred EEeeeceeEEEEEecCCCc-CcccccccchHHHHHHHHHHH-HCCeEecccC-----------CcceEEecCCcHHHHHH
Q 011959 396 CGGYISGMFGFFFTEGPVY-NFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDDIQH 462 (474)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-----------~~~~~~~~~~t~e~i~~ 462 (474)
..+..|.++++.+...... .+.. ........++.+.|+ ++||++.++. ...+|+++..++++|++
T Consensus 340 ~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~ 417 (429)
T 1yiz_A 340 TVPQGGYFMVADWSSLDSKVDLTQ--ETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQK 417 (429)
T ss_dssp EECSBSSEEEEECCSSCTTTTCCS--SSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHH
T ss_pred cCCCcceEEEEEcccccccccccc--cccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHH
Confidence 3444577888887532000 0000 000012356778776 7899998752 34678888889999999
Q ss_pred HHHHHHHHHhh
Q 011959 463 TITAAEKVLRQ 473 (474)
Q Consensus 463 ~l~~l~~~~~~ 473 (474)
++++|++++++
T Consensus 418 ~l~~l~~~l~~ 428 (429)
T 1yiz_A 418 AAEILRKWKGS 428 (429)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHhccC
Confidence 99999998764
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=282.65 Aligned_cols=353 Identities=14% Similarity=0.089 Sum_probs=240.5
Q ss_pred eEEEeeccCEEEEcCCC-------EEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCCC-CCHHHHHHHHHHHhhCC
Q 011959 83 IVFDSVKGSHMWDIDGN-------EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA-PCLLENVLAEMVISAVP 153 (474)
Q Consensus 83 ~~~~~~~G~~~~d~dG~-------~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~-~~~~~~~la~~l~~~~~ 153 (474)
++..+++|+++||.+|+ ++|||..+. +.++ .+|.|.+++.+++.+. ..|+. ..+++.++++++.+.++
T Consensus 8 ~~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g 84 (399)
T 1c7n_A 8 KISRKNLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQ 84 (399)
T ss_dssp CCCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHC
T ss_pred cccccCCCccccccchhhccccCCCceeeeecC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHhC
Confidence 44568999999998884 789998774 3344 6899999999998763 22321 34667777777766543
Q ss_pred ---CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC
Q 011959 154 ---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (474)
Q Consensus 154 ---~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 230 (474)
..++|++++||++|++.+++.. ..++++|++.+++||++...+. ..|..+..++.....+ .+.
T Consensus 85 ~~~~~~~v~~t~g~~~a~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~g--------~~~--- 150 (399)
T 1c7n_A 85 WDIQTDWIINTAGVVPAVFNAVREF--TKPGDGVIIITPVYYPFFMAIK-NQERKIIECELLEKDG--------YYT--- 150 (399)
T ss_dssp CCCCGGGEEEESSHHHHHHHHHHHH--CCTTCEEEECSSCCTHHHHHHH-TTTCEEEECCCEEETT--------EEE---
T ss_pred CCCChhhEEEcCCHHHHHHHHHHHh--cCCCCEEEEcCCCcHhHHHHHH-HcCCEEEecccccCCC--------CEE---
Confidence 4678999999999999999942 2345789999999999654433 3343222211100000 111
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-cccccc-----
Q 011959 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----- 303 (474)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~----- 303 (474)
.|+++|++.+++. ++++|+++.++|++|.+.+ .+++++|+++|++||++||+||+|++| +.+.. .....+
T Consensus 151 ~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 227 (399)
T 1c7n_A 151 IDFQKLEKLSKDK--NNKALLFCSPHNPVGRVWK-KDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLA 227 (399)
T ss_dssp CCHHHHHHHHTCT--TEEEEEEESSBTTTTBCCC-HHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred EcHHHHHHHhccC--CCcEEEEcCCCCCCCcCcC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCcccc
Confidence 2899999999742 5788888777788888765 556999999999999999999999988 65532 222221
Q ss_pred CCCCceeehhhhcC-CCcceEEEEec-HHHHHhhcCCCCcccccCC-CCChHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Q 011959 304 GVTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKE--PGTYEYLNKITG 378 (474)
Q Consensus 304 g~~pdi~t~sK~l~-~G~~iG~~~~~-~~i~~~~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~ 378 (474)
+....+.++||.++ +|+|+||++++ +++++.+.. .....++ +.|+++++++.++|+...+ +...++++++.+
T Consensus 228 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 304 (399)
T 1c7n_A 228 DKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTK---SRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQR 304 (399)
T ss_dssp TTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHH---HHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeChhhccccchheEEEEECCHHHHHHHHH---HHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 22233558999999 89999999986 678887763 2222333 5789999999999875321 334444555555
Q ss_pred HHHHHHHHHhhhcCCeeEEeeecee-EEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceE
Q 011959 379 ELTQGIIDAGKKAGHAICGGYISGM-FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGF 450 (474)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~ 450 (474)
++.+.|++. ++....+++.|.+ +++.+.... ....++.+.|+ ++||++.++. ...+|
T Consensus 305 ~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iR 369 (399)
T 1c7n_A 305 IVKDFFEVN---HPEIKAPLIEGTYLQWIDFRALK------------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFER 369 (399)
T ss_dssp HHHHHHHHH---CTTSBCCCCSBSSEEEEECGGGC------------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEE
T ss_pred HHHHHHHhh---CCCCeEecCCceEEEEEEcccCC------------CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEE
Confidence 555555542 2212223445554 456664210 01256888887 6899998763 24678
Q ss_pred EecCCcHHHHHHHHHHHHHHHhh
Q 011959 451 TSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 451 ~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+++..+++++++++++|++++++
T Consensus 370 is~~~~~~~l~~~l~~l~~~l~~ 392 (399)
T 1c7n_A 370 INLAAPSSVIQESLERLNKALKD 392 (399)
T ss_dssp EECCSCHHHHHHHHHHHHHHHHH
T ss_pred EEeccCHHHHHHHHHHHHHHHHH
Confidence 98888899999999999998865
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=270.13 Aligned_cols=339 Identities=15% Similarity=0.108 Sum_probs=228.3
Q ss_pred CeEEEeeccCEEEE-cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEE
Q 011959 82 PIVFDSVKGSHMWD-IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVR 159 (474)
Q Consensus 82 p~~~~~~~G~~~~d-~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~ 159 (474)
++++.+|.+.+.++ .+|+++|||.+|. ++++ .+|+|++++.+++++...| +.....++.++++++++ ..++++
T Consensus 8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~l~~~la~~~~~~~~~i~ 82 (361)
T 3ftb_A 8 GDLMIHGGDIYTEGVFKGRELLDYSSNI--NPLG-IPKSFLNNIDEGIKNLGVY--PDVNYRRLNKSIENYLKLKDIGIV 82 (361)
T ss_dssp --------------------CEETTCCC--CTTC-SCHHHHTTHHHHHHGGGSC--CCTTCHHHHHHHHHHHTCCSCEEE
T ss_pred CccccCCCCHHHHhhcCCCCEEEecCCC--CCCC-CCHHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHhCCCcceEE
Confidence 45555555555444 4899999999986 4555 6899999999999875433 44445677777777776 578999
Q ss_pred EeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHH
Q 011959 160 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (474)
Q Consensus 160 ~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~ 239 (474)
+++||++|++.+++. + ++|++.+++||+....+. ..|..+...+.....++ +++++++.
T Consensus 83 ~~~g~t~al~~~~~~---~---d~vi~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~--------------~~~~l~~~ 141 (361)
T 3ftb_A 83 LGNGASEIIELSISL---F---EKILIIVPSYAEYEINAK-KHGVSVVFSYLDENMCI--------------DYEDIISK 141 (361)
T ss_dssp EESSHHHHHHHHHTT---C---SEEEEEESCCTHHHHHHH-HTTCEEEEEECCTTSCC--------------CHHHHHHH
T ss_pred EcCCHHHHHHHHHHH---c---CcEEEecCChHHHHHHHH-HcCCeEEEeecCcccCC--------------CHHHHHHh
Confidence 999999999999984 3 899999999998654433 33432222111111111 67899988
Q ss_pred HhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhh
Q 011959 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKI 315 (474)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~ 315 (474)
+++ +++|+++.++|++|.+.+.++ +++|+++|++||++||+||+|++| +..........+..++++ ++||.
T Consensus 142 l~~----~~~v~i~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 216 (361)
T 3ftb_A 142 IDD----VDSVIIGNPNNPNGGLINKEK-FIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKF 216 (361)
T ss_dssp TTT----CSEEEEETTBTTTTBCCCHHH-HHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSST
T ss_pred ccC----CCEEEEeCCCCCCCCCCCHHH-HHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhh
Confidence 873 566666666788888876555 999999999999999999999988 542223333334334433 79999
Q ss_pred cC-CCcceEEEE-ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011959 316 IG-GGLPVGAYG-GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGH 393 (474)
Q Consensus 316 l~-~G~~iG~~~-~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (474)
++ +|+|+||++ +++++++.+... ..+++.|+++++++.++|+. .+..++.++..+..++.|.+.+.+++.
T Consensus 217 ~~~~G~r~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~ 288 (361)
T 3ftb_A 217 FAMPGIRFGYGITNNKEIAAKIKAK-----QNPWNINCFAEMAAINCLKD---TNYIEESLLWIKKERKRFIEELNKIGF 288 (361)
T ss_dssp TSCGGGCCEEEEESCHHHHHHHHTT-----SCTTCSCHHHHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred cCCCCcceeEEEeCCHHHHHHHHhh-----CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99 799999998 999999988742 23578899999999888863 233444444444444445444444554
Q ss_pred ee-EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------CcceEEecCCcHHHHHHHHHH
Q 011959 394 AI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITA 466 (474)
Q Consensus 394 ~~-~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~ 466 (474)
.. ..++.|.++++.+... ...++.+.|.++||++.++. ...+|+++. ++++++++++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~ 353 (361)
T 3ftb_A 289 IKRVFSPHANFVLCRLENI--------------SGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRA 353 (361)
T ss_dssp EEEEECCSSSEEEEEESSS--------------CHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHH
T ss_pred CceecCCCCeEEEEEcCCC--------------CHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHH
Confidence 44 5677888888877431 12578899999999998863 245788765 88889999999
Q ss_pred HHHHHhhC
Q 011959 467 AEKVLRQI 474 (474)
Q Consensus 467 l~~~~~~~ 474 (474)
|+++.+.+
T Consensus 354 l~~~~~~l 361 (361)
T 3ftb_A 354 LKGVENNL 361 (361)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 98887653
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=278.71 Aligned_cols=347 Identities=11% Similarity=0.007 Sum_probs=242.1
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhCC----C
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP----S 154 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---~~~~~~~~la~~l~~~~~----~ 154 (474)
|+....+.+.+++|.+|+++|||.+|. ..++ .+|.|++++.++++....|+ +..+++.++++++.+.++ .
T Consensus 13 ~~~~~~~~~~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~ 89 (396)
T 3jtx_A 13 PFARLHEAMQGISAPEGMEAVPLHIGE--PKHP-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVD 89 (396)
T ss_dssp HHHHHHHHTTTCCCCTTCCCEECSCCS--CCSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCC
T ss_pred hHHHHHHHHHhhhhccCCCeEEeCCcC--CCCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCC
Confidence 444456677778899999999999985 3444 68999999999886544443 245788899999988764 2
Q ss_pred CC-eEEEeCCHHHHHHHHHHHhHhhcCC----cEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEcc
Q 011959 155 IE-MVRFVNSGTEACMGVLRLARAFTGR----ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229 (474)
Q Consensus 155 ~~-~v~~~~sGseA~~~al~~ar~~~~~----~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 229 (474)
.+ ++++++||++|++.+++.... .++ +.|++.+++||++...+ ...|..+..++. ...++.
T Consensus 90 ~~~~i~~t~g~~~al~~~~~~~~~-~g~~~~~d~vl~~~p~~~~~~~~~-~~~g~~~~~v~~-~~~g~~----------- 155 (396)
T 3jtx_A 90 ADNEILPVLGSREALFSFVQTVLN-PVSDGIKPAIVSPNPFYQIYEGAT-LLGGGEIHFANC-PAPSFN----------- 155 (396)
T ss_dssp TTTSEEEESSHHHHHHHHHHHHCC-C---CCCCEEEEEESCCHHHHHHH-HHTTCEEEEEEC-CTTTCC-----------
T ss_pred CCCeEEEcCCcHHHHHHHHHHHhC-CCCccCCCEEEEcCCCcHhHHHHH-HHcCCEEEEeec-CCCCCc-----------
Confidence 67 999999999999999995321 222 68999999999865533 334443322211 111110
Q ss_pred CCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC-CCcccc------
Q 011959 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGGAQE------ 301 (474)
Q Consensus 230 ~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~~~~~~------ 301 (474)
-|+++|++.+++ ++++|+++.++|++|.+.+.++ +++|.++|++||++||+||+|++| +.+ ......
T Consensus 156 -~d~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 230 (396)
T 3jtx_A 156 -PDWRSISEEVWK---RTKLVFVCSPNNPSGSVLDLDG-WKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQL 230 (396)
T ss_dssp -CCGGGSCHHHHH---TEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHT
T ss_pred -cCHHHHHHhhcc---CcEEEEEECCCCCCCCcCCHHH-HHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhc
Confidence 167888888874 5778887777888998887666 999999999999999999999988 655 232221
Q ss_pred --ccCCCCceeehhhhcC-CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 011959 302 --YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 378 (474)
Q Consensus 302 --~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~ 378 (474)
..+..+++.+|||+++ +|+|+||+++++++++.+. ......+++.|+++++++.++|+. ++..++.++..+
T Consensus 231 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~ 304 (396)
T 3jtx_A 231 GRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFL---LYRTYHGSAMSIPVQRASIAAWDD---EQHVIDNRRLYQ 304 (396)
T ss_dssp TCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHH---HHHHHHTCCCCHHHHHHHHHHHHC---CHHHHHHHHHHH
T ss_pred ccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHH---HHHhhcccCCCHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 1344455668999987 6999999999999998886 333455778899999999998873 333333333333
Q ss_pred HHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------------
Q 011959 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------------ 445 (474)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------------ 445 (474)
..++.+.+.+.++ .....+..|.++++.+... ....+.+.|+ ++||++.++.
T Consensus 305 ~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~ 369 (396)
T 3jtx_A 305 EKFERVIPILQQV-FDVKLPDASFYIWLKVPDG--------------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPG 369 (396)
T ss_dssp HHHHHHHHHHTTT-SCCCCCSSSSEEEEECTTS--------------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTT
T ss_pred HHHHHHHHHHHhc-CCccCCCeeEEEEEECCCC--------------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCC
Confidence 3333333333332 1122234567777776421 1246777775 5699997752
Q ss_pred CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 446 FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 446 ~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
...+|+++..+++++++++++|++++
T Consensus 370 ~~~iRis~~~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 370 EGYVRIALVADVATCVKAAEDIVSLY 395 (396)
T ss_dssp TTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 24678888889999999999999875
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=279.21 Aligned_cols=356 Identities=10% Similarity=0.081 Sum_probs=234.7
Q ss_pred eEEEeeccCEEEEcCCC---EEEeccCChhhccCCC-CCHHHHHHHHHHHHhcC--CC---CCCCHHHHHHHHHHHhhCC
Q 011959 83 IVFDSVKGSHMWDIDGN---EYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT--SF---GAPCLLENVLAEMVISAVP 153 (474)
Q Consensus 83 ~~~~~~~G~~~~d~dG~---~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~--~~---~~~~~~~~~la~~l~~~~~ 153 (474)
.++..++|.++++.+++ ++|||.+| ++.+. .+|+|++|+.+++++.. .| .+..+++.++++++++.++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~id~~~g---~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g 96 (407)
T 3nra_A 20 EVRQSAAGLEALIRGAPIEGRPVDFSHG---DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTG 96 (407)
T ss_dssp -------CCTTTCCSCCCCSCCEETTSC---CTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhHHHhhcCCCCCceeeecCc---CCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhC
Confidence 34677888887755555 59999987 55543 68999999999987531 12 2346788999999998875
Q ss_pred C---C-CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEcc
Q 011959 154 S---I-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229 (474)
Q Consensus 154 ~---~-~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 229 (474)
. . +++++++||++|++.+++. ...+++.|++.+++|+++... +...|..+..++......- .+..
T Consensus 97 ~~~~~~~~i~~~~g~~~a~~~~~~~--l~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----~~~~--- 165 (407)
T 3nra_A 97 APVDARDGLIITPGTQGALFLAVAA--TVARGDKVAIVQPDYFANRKL-VEFFEGEMVPVQLDYVSAD-----ETRA--- 165 (407)
T ss_dssp SCCCTTTSEEEESHHHHHHHHHHHT--TCCTTCEEEEEESCCTHHHHH-HHHTTCEEEEEEBCCCSSC-----CSSC---
T ss_pred CCCCCCCcEEEeCCcHHHHHHHHHH--hCCCCCEEEEcCCcccchHHH-HHHcCCEEEEeeccccccc-----CcCC---
Confidence 2 3 7999999999999999984 234567888889998875433 3334433222111000000 0000
Q ss_pred CCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccccC---
Q 011959 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG--- 304 (474)
Q Consensus 230 ~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g--- 304 (474)
.-|+++|++.+++ ++++|+++.++|++|.+.+. +++++|.++|++||++||+||+|++| +.+.. .....++
T Consensus 166 ~~d~~~l~~~l~~---~~~~v~~~~p~nptG~~~~~-~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~ 241 (407)
T 3nra_A 166 GLDLTGLEEAFKA---GARVFLFSNPNNPAGVVYSA-EEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVD 241 (407)
T ss_dssp CBCHHHHHHHHHT---TCCEEEEESSCTTTCCCCCH-HHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSC
T ss_pred CcCHHHHHHHHhh---CCcEEEEcCCCCCCCcccCH-HHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCccc
Confidence 0189999999985 45666666667888887754 45999999999999999999999988 65532 2222222
Q ss_pred --CCCceeehhhhcC-CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011959 305 --VTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 381 (474)
Q Consensus 305 --~~pdi~t~sK~l~-~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~ 381 (474)
...++.++||+++ +|+|+||+++++++++.+. ......+++.++++++++.++|+. ..+..++..+..+.++
T Consensus 242 ~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~ 316 (407)
T 3nra_A 242 AENVVTIMGPSKTESLSGYRLGVAFGSRAIIARME---KLQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQAIR 316 (407)
T ss_dssp GGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHH---HHHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHHHH
T ss_pred CCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHH---HHHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHHHH
Confidence 2234558999999 8999999999999998886 333445677788888887777652 1344444444444444
Q ss_pred HHHHHHhhhcCCeeEEe-eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC------CcceEEec
Q 011959 382 QGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSL 453 (474)
Q Consensus 382 ~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~~~~~ 453 (474)
+.|.+.+.+++....+. ..|.++++.+.... ....++.+.|++ +||++.++. ...+|+++
T Consensus 317 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~ 384 (407)
T 3nra_A 317 DELLHVLRGCEGVFARTPQAGSYLFPRLPKLA------------VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNF 384 (407)
T ss_dssp HHHHHHHHTSTTCBCCCCSBSSEECCBCCCBS------------SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEEC
T ss_pred HHHHHHHhcCCCceeccCCeeEEEEEeCCCCC------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEe
Confidence 44444444443222223 33466666553211 112567788875 599998753 34678988
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q 011959 454 AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~~t~e~i~~~l~~l~~~~~~ 473 (474)
..++++|++++++|++++++
T Consensus 385 ~~~~~~i~~~~~~l~~~~~~ 404 (407)
T 3nra_A 385 SQDHEAAVAAARRIVTLVER 404 (407)
T ss_dssp CSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999999875
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-32 Score=266.05 Aligned_cols=334 Identities=12% Similarity=0.040 Sum_probs=238.4
Q ss_pred eccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHH
Q 011959 88 VKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTE 166 (474)
Q Consensus 88 ~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGse 166 (474)
.+|.++++.+|+++|||.+|. ++++ .+|+|++++.+++++. ..++.....+|.++++++++ ..+++++++||++
T Consensus 5 ~~~~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~--~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~ 79 (354)
T 3ly1_A 5 PESAAFTAPSTDNPIRINFNE--NPLG-MSPKAQAAARDAVVKA--NRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSE 79 (354)
T ss_dssp ----CCCCCCSSSCEECSSCC--CSSC-CCHHHHHHHHHTGGGT--TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHH
T ss_pred cccccccCCCCCceEEccCCC--CCCC-CCHHHHHHHHHHHhhC--cCCCCCchHHHHHHHHHHhCCChHHEEEeCChHH
Confidence 456778889999999999885 4555 7899999999988763 33466677899999999986 4689999999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
|++.+++.. ...+++|++.+++|+++...+ ...|..+..++.....++ |+++|++.++++ ++
T Consensus 80 a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~--------------d~~~l~~~l~~~-~~ 141 (354)
T 3ly1_A 80 GIRAAIEAY--ASLEAQLVIPELTYGDGEHFA-KIAGMKVTKVKMLDNWAF--------------DIEGLKAAVAAY-SG 141 (354)
T ss_dssp HHHHHHHHH--CCTTCEEEEESSSCTHHHHHH-HHTTCEEEEECCCTTSCC--------------CHHHHHHHHHTC-SS
T ss_pred HHHHHHHHH--hCCCCeEEECCCCchHHHHHH-HHcCCEEEEecCCCCCCC--------------CHHHHHHHhccC-CC
Confidence 999999952 245678999999998854433 333432222111111111 899999999853 25
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccc---c-CCCCceeehhhhcC-CC
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY---F-GVTPDLTTLGKIIG-GG 319 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~---~-g~~pdi~t~sK~l~-~G 319 (474)
+++|+++.++|++|.+.+.++ +.+|+++| +||++||+||+|.+| +.+.. ..... + +....+.++||.++ +|
T Consensus 142 ~~~v~l~~p~nptG~~~~~~~-l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 219 (354)
T 3ly1_A 142 PSIVYLVNPNNPTGTITPADV-IEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAG 219 (354)
T ss_dssp CEEEEEESSCTTTCCCCCHHH-HHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGG
T ss_pred CCEEEEeCCCCCcCCCcCHHH-HHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChh
Confidence 788888777888998887544 67777777 699999999999988 55432 11111 1 33334458999999 89
Q ss_pred cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe
Q 011959 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (474)
+|+||+++++++++.+.... ..++.|+++++++.++|+..+. ++..++++++.+++.+.|++. ++. ..+
T Consensus 220 ~r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~-~~~ 289 (354)
T 3ly1_A 220 MRVGYAVAHPTVIALMGRYV-----AGEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL----KLP-YLP 289 (354)
T ss_dssp GCCEEEECCHHHHHHHGGGT-----TCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----TCC-BCC
T ss_pred hhheeeecCHHHHHHHHHhc-----CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----CCe-ECC
Confidence 99999999999999887421 2368899999999988864321 344555666666666666654 322 235
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+.|.++++.+.. ....+.+.|.++||++. +. ...+|+++. +++++++++++|++++++
T Consensus 290 ~~~~~~~~~~~~---------------~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 290 SEGNFVFHQLVV---------------PLKDYQTHMADAGVLIG-RAFPPADNWCRISLG-TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CCSSEEEEECSS---------------CHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCC---------------CHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 678888777642 12578888999999988 32 345788865 899999999999998864
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-32 Score=274.83 Aligned_cols=352 Identities=13% Similarity=0.089 Sum_probs=240.2
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHh-c-CCCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-G-TSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~-~~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~ 168 (474)
.|+++|||..|.. .++ .++.+.+++.+++++ + ..|+. ..+++.++++++.+.++ +.++|++++||++|+
T Consensus 55 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFF--SYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSC--SSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 4567899998853 344 689999999999875 2 23322 35778888888877664 346899999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC-CCCCCCCCceEEccC-CCHHHHHHHHhcCCCC
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTAPF-NDVSALENLFENNKGE 246 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~ 246 (474)
+.+++.. ..++++|++.+++||++... +...|..+..++..... +... ......+ .|+++|++.++ ++
T Consensus 132 ~~~~~~l--~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~~~~~~~~----~~~~~~~~~d~~~l~~~l~---~~ 201 (447)
T 3b46_A 132 LSCLMGL--LNAGDEVIVFEPFFDQYIPN-IELCGGKVVYVPINPPKELDQR----NTRGEEWTIDFEQFEKAIT---SK 201 (447)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEEEECCGGGGTS----CBCSTTSEECHHHHHTTCC---TT
T ss_pred HHHHHHH--cCCCCEEEEeCCCchhHHHH-HHHcCCEEEEEeCCCccccccc----cccccCcccCHHHHHHhhc---cC
Confidence 9999953 34568899999999986543 34444433221110000 0000 0000011 28999998886 36
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc---c--cccCCCCceeehhhhcC-CC
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA---Q--EYFGVTPDLTTLGKIIG-GG 319 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~---~--~~~g~~pdi~t~sK~l~-~G 319 (474)
+++|++++++|++|.+.+ .+++++|+++|++||++||+||+|++| +.+.... . +..+..+.+.++||.++ +|
T Consensus 202 ~~~v~l~~p~nptG~~~~-~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 280 (447)
T 3b46_A 202 TKAVIINTPHNPIGKVFT-REELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG 280 (447)
T ss_dssp EEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT
T ss_pred CeEEEEeCCCCCCCcccC-HHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc
Confidence 888888888888998875 566999999999999999999999988 5542111 1 12455566779999999 89
Q ss_pred cceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCe
Q 011959 320 LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (474)
Q Consensus 320 ~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (474)
||+||+++ ++++++.+. ...+..+++.++++++++.++|+.... +++.++++++++++.+.|+++ ++.
T Consensus 281 ~riG~~~~~~~~l~~~l~---~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~ 353 (447)
T 3b46_A 281 WRIGWVLSLNAELLSYAA---KAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL----GLP 353 (447)
T ss_dssp SCCEEEECSCHHHHHHHH---HHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH----TCC
T ss_pred hhhEEEEeCCHHHHHHHH---HHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC----CCe
Confidence 99999999 999998886 333456788899999999999987632 334555666666666666654 444
Q ss_pred eEEeeeceeEEEEEecCCCc-C--cccccccchHHHHHHHHHHH-HCCeEecccC-----------CcceEEecCCcHHH
Q 011959 395 ICGGYISGMFGFFFTEGPVY-N--FEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDD 459 (474)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-----------~~~~~~~~~~t~e~ 459 (474)
...+..|.++++.+...... . +... ..+.....++.+.|+ ++||++.|+. ...+|+++..++++
T Consensus 354 ~~~~~~g~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e~ 432 (447)
T 3b46_A 354 YTAPEGTYFVLVDFSKVKIPEDYPYPEE-ILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAY 432 (447)
T ss_dssp EECCSBSSEEEEECTTCCCCTTCCCCGG-GSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHHH
T ss_pred ecCCCeeEEEEEecccccCccccccccc-cccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHHH
Confidence 33455677788877431000 0 0000 000112356787776 5899998763 34679988889999
Q ss_pred HHHHHHHHHHH
Q 011959 460 IQHTITAAEKV 470 (474)
Q Consensus 460 i~~~l~~l~~~ 470 (474)
|++++++|+++
T Consensus 433 l~~~~~~l~~~ 443 (447)
T 3b46_A 433 LENAVERLKLL 443 (447)
T ss_dssp HHHHHHHGGGG
T ss_pred HHHHHHHHHHH
Confidence 99999999873
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=269.12 Aligned_cols=333 Identities=17% Similarity=0.128 Sum_probs=239.7
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~ 168 (474)
|+++|||.+|.. +..+++++.+.+++.+++++.. .|+. ..+++.++++++.+.++ ..+++++++||++|+
T Consensus 33 g~~~idl~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~ 111 (407)
T 2zc0_A 33 GVKLISLAAGDP-DPELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGAL 111 (407)
T ss_dssp SCCCEECCSCCC-CTTTSCHHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHH
T ss_pred CCceEeCCCCCC-CchhCCHHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHH
Confidence 778899988864 3557889999999999987631 1332 34677788888876554 367999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC----CCHHHHHHHHh---
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFE--- 241 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~d~~~le~~l~--- 241 (474)
+.+++.+ ...+++|++.+++||+.... +...|..+ +.+|. .|+++|++.++
T Consensus 112 ~~~~~~~--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~-------------------~~v~~~~~~~d~~~l~~~l~~~~ 169 (407)
T 2zc0_A 112 DLLGRVL--IDPGDVVITENPSYINTLLA-FEQLGAKI-------------------EGVPVDNDGMRVDLLEEKIKELK 169 (407)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHH-HHTTTCEE-------------------EEEEEETTEECHHHHHHHHHHHH
T ss_pred HHHHHHh--cCCCCEEEEeCCChHHHHHH-HHHcCCEE-------------------EEcccCCCCCCHHHHHHHHHhhh
Confidence 9999964 23467899999999985433 33333322 22221 28999999987
Q ss_pred -cCCCCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccccCC---CCceeehhh
Q 011959 242 -NNKGEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGV---TPDLTTLGK 314 (474)
Q Consensus 242 -~~~~~~a~vi-~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~---~pdi~t~sK 314 (474)
++ .++++|+ ++.++|++|.+.+ .+++++|.++|++||++||+||+|+++ +.+.. .....++. ..++.++||
T Consensus 170 ~~~-~~~~~v~~~~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 247 (407)
T 2zc0_A 170 AKG-QKVKLIYTIPTGQNPMGVTMS-MERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSK 247 (407)
T ss_dssp HTT-CCEEEEEECCSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTT
T ss_pred ccc-CCceEEEECCCCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEccccc
Confidence 42 2577775 5556777888765 566999999999999999999999988 55532 22222322 234568999
Q ss_pred hcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHh----cC-CCHHHHHHHHHHHHHHHHHHHhh
Q 011959 315 IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL----KE-PGTYEYLNKITGELTQGIIDAGK 389 (474)
Q Consensus 315 ~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~----~~-~~~~~~~~~~~~~l~~~L~~~~~ 389 (474)
.+++|+|+||+++++++++.+.. .....+++.+++++.++.++|+.. .. +...++++++.+++.+.|++...
T Consensus 248 ~~~~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 324 (407)
T 2zc0_A 248 VLGTGFRIGWIIAEGEILKKVLM---QKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLP 324 (407)
T ss_dssp TTCTTSCCEEEECCHHHHHHHHH---HHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccCCCcceEEEecCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999888863 333446778999999999999764 22 56777788888888888876422
Q ss_pred hcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC--------CcceEEecCC-cHHH
Q 011959 390 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ--------FEAGFTSLAH-SSDD 459 (474)
Q Consensus 390 ~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--------~~~~~~~~~~-t~e~ 459 (474)
... ...+..|.++++.+... ....++.+.|.++ ||++.++. ...+|+++.. |+++
T Consensus 325 ~~~--~~~~~~~~~~~~~~~~~-------------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~ 389 (407)
T 2zc0_A 325 NAE--FTKPIAGMFVMFFLPEG-------------ADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEE 389 (407)
T ss_dssp TSC--BCCCSBSSEEEEECSTT-------------CCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTH
T ss_pred CCE--EecCCCcEEEEEEcCCC-------------CCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHH
Confidence 222 11234567777776421 0125688888888 99998752 2457887665 7999
Q ss_pred HHHHHHHHHHHHhh
Q 011959 460 IQHTITAAEKVLRQ 473 (474)
Q Consensus 460 i~~~l~~l~~~~~~ 473 (474)
+++++++|++++++
T Consensus 390 i~~~~~~l~~~l~~ 403 (407)
T 2zc0_A 390 IPIGIKKLAKLYKE 403 (407)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-32 Score=270.81 Aligned_cols=327 Identities=15% Similarity=0.117 Sum_probs=225.4
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~ 168 (474)
.+|+++|||.+|. +.++ .+|+|++++.+++.+. ..|+ +..+++.++++++.+.++ +.++|++++||++|+
T Consensus 28 ~~g~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al 104 (391)
T 3h14_A 28 EAGRRIIHMEVGQ--PGTG-APRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGF 104 (391)
T ss_dssp HTTCCCEECCCSS--CSSC-SCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred hcCCCeEEccCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHH
Confidence 3688999999886 3444 3889999999988763 2232 134677788888776543 568999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-------CHHHHHHHHh
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-------DVSALENLFE 241 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------d~~~le~~l~ 241 (474)
+.+++.. ...+++|++.+++|++....+ ...|..+ ..+|++ |+++|++.
T Consensus 105 ~~~~~~l--~~~gd~vl~~~p~~~~~~~~~-~~~g~~~-------------------~~v~~~~~~~~~~d~~~l~~~-- 160 (391)
T 3h14_A 105 LLAFTAL--FDSGDRVGIGAPGYPSYRQIL-RALGLVP-------------------VDLPTAPENRLQPVPADFAGL-- 160 (391)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHHH-HHTTCEE-------------------EEEECCGGGTTSCCHHHHTTS--
T ss_pred HHHHHHh--cCCCCEEEEcCCCCccHHHHH-HHcCCEE-------------------EEeecCcccCCCCCHHHHHhc--
Confidence 9999952 345688999999998865433 3333322 222221 67777654
Q ss_pred cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-ccccCCCCceeehhhhcC-C
Q 011959 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFGVTPDLTTLGKIIG-G 318 (474)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~g~~pdi~t~sK~l~-~ 318 (474)
++++|+++.++|++|.+.+.++ +++|.++|++||++||+||+|++| +.+.... .+..+....+.++||.++ +
T Consensus 161 ----~~~~v~i~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 235 (391)
T 3h14_A 161 ----DLAGLMVASPANPTGTMLDHAA-MGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMT 235 (391)
T ss_dssp ----CCSEEEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCT
T ss_pred ----CCeEEEECCCCCCCCccCCHHH-HHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCc
Confidence 4667777777888998887655 999999999999999999999988 6553322 222122222338999998 8
Q ss_pred CcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 319 G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
|+|+||+++++++++.+. ......+++.|++++.++.++|+..+. ++..++++++.+++.+.|++ ++....+
T Consensus 236 G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~ 308 (391)
T 3h14_A 236 GWRVGWMVVPEDQVRVVE---RIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPK----AGFTRIA 308 (391)
T ss_dssp TSCCEEEECCGGGHHHHH---HHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH----HTCCCBC
T ss_pred cceeEEEEeCHHHHHHHH---HHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH----cCCCccc
Confidence 999999999999988886 334456778899999999888861111 23344445555555555544 3443333
Q ss_pred eee-ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC-------CcceEEecCCcHHHHHHHHHHHH
Q 011959 398 GYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAE 468 (474)
Q Consensus 398 ~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~-------~~~~~~~~~~t~e~i~~~l~~l~ 468 (474)
++. +.++++.+.... ....++.+.|+++ ||++.++. ...+|+++..+++++++++++|+
T Consensus 309 ~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~ 376 (391)
T 3h14_A 309 PPDGAFYVYADVSDLT------------DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLE 376 (391)
T ss_dssp CCCBTTEEEEECTTTC------------SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHH
T ss_pred CCCeeEEEEEecCccC------------CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 444 456666663211 0125678888875 99998752 34678998889999999999999
Q ss_pred HHHhh
Q 011959 469 KVLRQ 473 (474)
Q Consensus 469 ~~~~~ 473 (474)
+++++
T Consensus 377 ~~~~~ 381 (391)
T 3h14_A 377 AFMQA 381 (391)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=265.17 Aligned_cols=326 Identities=13% Similarity=0.084 Sum_probs=231.0
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHh
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLA 175 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~a 175 (474)
.+.+|||.++. ++++ .+|+|++++.+++.+...++++.....++.++++++++ ..+++++++||++|++.+++..
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~ 105 (367)
T 3euc_A 29 SHGLVKLDAME--NPYR-LPPALRSELAARLGEVALNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAA 105 (367)
T ss_dssp CTTCEECCSSC--CCCC-CCHHHHHHHHHHHHHHHTTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHT
T ss_pred CCCeeEccCCC--CCCC-CCHHHHHHHHHHhhhhhhhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHH
Confidence 36789999884 4444 78999999999988532233344445677788877774 3479999999999999999952
Q ss_pred HhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
...+++|++.+++|+++...+. ..|..+..++..... ..|+++|++.++++ ++++|+++.+
T Consensus 106 --~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~--------------~~d~~~l~~~l~~~--~~~~v~~~~~ 166 (367)
T 3euc_A 106 --ARPGAKVMAPVPGFVMYAMSAQ-FAGLEFVGVPLRADF--------------TLDRGAMLAAMAEH--QPAIVYLAYP 166 (367)
T ss_dssp --CCTTCEEEEEESCSCCSCHHHH-TTTCEEEEEECCTTS--------------CCCHHHHHHHHHHH--CCSEEEEESS
T ss_pred --cCCCCEEEEcCCCHHHHHHHHH-HcCCeEEEecCCCCC--------------CCCHHHHHHHhhcc--CCCEEEEcCC
Confidence 3456889999999999765533 233322211111000 12899999999853 4678888777
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIM 332 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~ 332 (474)
+|++|.+.+.++ +++|.++|++| |++||+||+|++| +.+........+...++.++||...+|+|+||++++++++
T Consensus 167 ~nptG~~~~~~~-l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~ 245 (367)
T 3euc_A 167 NNPTGNLFDAAD-MEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQWL 245 (367)
T ss_dssp CTTTCCCCCHHH-HHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHHHH
T ss_pred CCCCCCCCCHHH-HHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceeeeeCHHHH
Confidence 888998886555 99999999999 9999999999988 5443333344444455668999933799999999999999
Q ss_pred HhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecC
Q 011959 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411 (474)
Q Consensus 333 ~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~ 411 (474)
+.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|+ +++.....++.|.++++.+. +
T Consensus 246 ~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~----~~~g~~~~~~~~~~~~~~~~-~ 315 (367)
T 3euc_A 246 EQLDKV-----RPPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMA----AHGGVTVFPSAANFLLARVP-D 315 (367)
T ss_dssp HHHGGG-----CCSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH----TSTTCEECCCSSSEEEEECS-C
T ss_pred HHHHHh-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH----hCCCcEECCCCCeEEEEECC-C
Confidence 988732 23577899999999999875111 3334444444455554444 44322345667888877663 1
Q ss_pred CCcCcccccccchHHHHHHHHHHHHCCeEecccCC------cceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
...+.+.|.++||++.++.. ..+|+++. +++++++++++|+++++
T Consensus 316 ---------------~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 316 ---------------AAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp ---------------HHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred ---------------HHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 25678889999999987642 46788866 99999999999999875
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=269.77 Aligned_cols=332 Identities=15% Similarity=0.090 Sum_probs=224.3
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHhhCC---CCC-eEEEeCCHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPC-----LLENVLAEMVISAVP---SIE-MVRFVNSGTE 166 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-----~~~~~la~~l~~~~~---~~~-~v~~~~sGse 166 (474)
.+|+++|||.+|. ..+| .+|.+.+++.+++++...++++. +++.++++++.+.++ .++ +|++++||++
T Consensus 22 ~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (376)
T 2dou_A 22 ERGVGLIDLSIGS--TDLP-PPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98 (376)
T ss_dssp HTTCCCEECSSCC--CCCC-CCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHH
T ss_pred ccCCCEEeccCCC--CCCC-CCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence 3578899999885 3566 58999999999986532233343 334444444444334 235 8999999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
|++.+++.. ..++++|++.+++||++...+. ..|..+..++. ..++ ..|+++|++.++. +
T Consensus 99 a~~~~~~~l--~~~gd~vl~~~p~y~~~~~~~~-~~g~~~~~~~~--~~~~------------~~d~~~l~~~l~~---~ 158 (376)
T 2dou_A 99 GLAHLLLAL--TEPEDLLLLPEVAYPSYFGAAR-VASLRTFLIPL--REDG------------LADLKAVPEGVWR---E 158 (376)
T ss_dssp HHHHHHHHH--CCTTCEEEEESSCCHHHHHHHH-HTTCEEEEECB--CTTS------------SBCGGGSCHHHHH---H
T ss_pred HHHHHHHHh--cCCCCEEEECCCCcHhHHHHHH-HcCCEEEEeeC--CCCC------------CCCHHHHHHhhcc---C
Confidence 999999952 2345789999999999655443 33433222111 1111 0267888888762 5
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-cccccc---CCCCceeehhhhcC-CCc
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF---GVTPDLTTLGKIIG-GGL 320 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~---g~~pdi~t~sK~l~-~G~ 320 (474)
+++|+++.++|++|.+.+ .+++++|.++|++||++||+||+|++| +.+.. ...+.. +....+.++||.++ +|+
T Consensus 159 ~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 237 (376)
T 2dou_A 159 AKVLLLNYPNNPTGAVAD-WGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGF 237 (376)
T ss_dssp EEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGG
T ss_pred ceEEEECCCCCCcCccCC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhh
Confidence 788888766778888765 556999999999999999999999988 55432 122222 23334558999998 799
Q ss_pred ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee-
Q 011959 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY- 399 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~- 399 (474)
|+||+++++++++.+.. .....+++.|+++++++.++|+.. ++..++.++..+..++.|.+.+.++ +. ..++
T Consensus 238 r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~-~~~~~ 310 (376)
T 2dou_A 238 RLGFALGSEEALARLER---VKGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAEALKGV-LS-LLPPR 310 (376)
T ss_dssp CCEEEEECHHHHHHHHH---HHHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHTTT-SE-ECCCC
T ss_pred eeEEEecCHHHHHHHHH---HHHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHh-cC-ccCCC
Confidence 99999999999988862 334456778999999998888642 2233333333333444444433333 22 2233
Q ss_pred eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
.|.++++.+... ....++.+.|+++||++.++. ...+|+++..+++++++++++|++++
T Consensus 311 ~~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 311 ATMYLWGRLPEG-------------VDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp BSSEEEEECCTT-------------CCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred eeEEEEEECCCC-------------CCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 456677776421 012468889999999998763 34678988889999999999998865
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=269.29 Aligned_cols=321 Identities=14% Similarity=0.140 Sum_probs=233.1
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~ 169 (474)
+|+++|||.++. ..+|+ +|.+.+++.++++++. .|+ +..+++.++++++.+.++ +.+++++++||++|++
T Consensus 27 ~g~~~i~l~~~~--~~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGE--PDFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCS--CSSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCC--CCCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 477889998885 35665 8999999999987642 333 235678888888877553 4679999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (474)
.+++.. ..++++|++.+++||+....+ ...|. +++.+| .|+++|++.+++ ++++
T Consensus 104 ~~~~~~--~~~gd~vl~~~p~~~~~~~~~-~~~g~-------------------~~~~v~-~d~~~l~~~l~~---~~~~ 157 (370)
T 2z61_A 104 FALSSI--IDDGDEVLIQNPCYPCYKNFI-RFLGA-------------------KPVFCD-FTVESLEEALSD---KTKA 157 (370)
T ss_dssp HHHHHH--CCTTCEEEEESSCCTHHHHHH-HHTTC-------------------EEEEEC-SSHHHHHHHCCS---SEEE
T ss_pred HHHHHh--cCCCCEEEEeCCCchhHHHHH-HHcCC-------------------EEEEeC-CCHHHHHHhccc---CceE
Confidence 999953 344578999999999865443 22232 233344 489999998863 5788
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcccccc-CCC-Cc--eeehhhhcC-CCcceE
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF-GVT-PD--LTTLGKIIG-GGLPVG 323 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~-g~~-pd--i~t~sK~l~-~G~~iG 323 (474)
|++++++|++|.+.+ ++ |.++|++||++||+||+|+++ +.|.......+ +.. .| +.++||.++ +|+|+|
T Consensus 158 v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 232 (370)
T 2z61_A 158 IIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIG 232 (370)
T ss_dssp EEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCE
T ss_pred EEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEE
Confidence 888888888999988 66 999999999999999999988 55533222222 111 23 448999998 799999
Q ss_pred EEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-hcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeee
Q 011959 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (474)
Q Consensus 324 ~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (474)
|+++++++++.+. ......+++.|+++++++.++|+. .++ ++..++++++.+++.+.|++. ++....+..
T Consensus 233 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~ 305 (370)
T 2z61_A 233 YVISNDEIIEAIL---KLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF----GWEVNNPIG 305 (370)
T ss_dssp EEECCHHHHHHHH---HHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCBCCCCCB
T ss_pred EEEECHHHHHHHH---HHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc----CCeecCCCc
Confidence 9999999998886 333445678899999999888865 222 445666777777777777664 322212233
Q ss_pred ceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
|.++++.+.. ...++.+.|+ ++||++.++. ...+|+++.++++++++++++|++++++
T Consensus 306 ~~~~~~~~~~---------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~~ 370 (370)
T 2z61_A 306 AYYVFPNIGE---------------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLNK 370 (370)
T ss_dssp TTEECCBCSS---------------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEecCC---------------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHhC
Confidence 5555555421 1256788887 7899998752 3468998889999999999999998753
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=268.92 Aligned_cols=328 Identities=12% Similarity=0.000 Sum_probs=230.5
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~ 169 (474)
.+| ++|||.+|. +.++ .+|.|++++.+++.....|+. ..+++.++++++.+.++ ..+++++++||++|++
T Consensus 21 ~~g-~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~ 96 (376)
T 3ezs_A 21 PKK-RGLDLGIGE--PQFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF 96 (376)
T ss_dssp CSS-CCCBCSSCC--CCSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred ccC-CEEEeCCCC--CCCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence 367 889999885 4555 689999999998754444432 35788889999887765 4689999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (474)
.+++....-+++++|++.+++||++...+ ...|..+..++.....++ ++ ++++.+.. ++++
T Consensus 97 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~--------------~~-~l~~~~~~---~~~~ 157 (376)
T 3ezs_A 97 NFPSFVLFDYQNPTIAYPNPFYQIYEGAA-KFIKAKSLLMPLTKENDF--------------TP-SLNEKELQ---EVDL 157 (376)
T ss_dssp HHHHHHTTTCSSCEEEEEESCCTHHHHHH-HHTTCEEEEEECCGGGTS--------------CC-CCCHHHHH---HCSE
T ss_pred HHHHHHcCCCCCCEEEEecCCcHhHHHHH-HHcCCEEEEcccCCCCCc--------------ch-hHHhhhcc---CCCE
Confidence 99995322112688999999999865543 333332222111110011 11 44555553 4567
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccc-c--------ccCCCCceeehhhhcC-C
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-E--------YFGVTPDLTTLGKIIG-G 318 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~-~--------~~g~~pdi~t~sK~l~-~ 318 (474)
|+++.++|++|.+.+.++ +++|+++|++||++||+||+|++| +.+..... . ..+....+.++||.+| +
T Consensus 158 v~~~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 236 (376)
T 3ezs_A 158 VILNSPNNPTGRTLSLEE-LISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP 236 (376)
T ss_dssp EEECSSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG
T ss_pred EEEcCCCCCcCCCCCHHH-HHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCc
Confidence 777666788898876555 999999999999999999999988 65533222 1 2344455668999997 7
Q ss_pred CcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe
Q 011959 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (474)
Q Consensus 319 G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (474)
|+|+||+++++++++.+. ......+++.|+++++++.++|+. .+..++.++..+..++.+.+.+. ++. .+
T Consensus 237 G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~ 306 (376)
T 3ezs_A 237 GLRSGFIAGDSRLLEKYK---AFRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKIFK--NTL--IY 306 (376)
T ss_dssp GGCCEEEEECHHHHHHHH---HHHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHHST--TCC--CC
T ss_pred cceeEEEeeCHHHHHHHH---HHHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHhc--CCC--CC
Confidence 999999999999998887 333455788999999999999874 33344444444444444444433 322 45
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC--------CcceEEecCCcHHHHHHHHHHHHH
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~--------~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
..|.++++.+.+ ..++.+.|++ +||++.++. ...+|+++..|++++++++++|++
T Consensus 307 ~~~~~~~~~~~~----------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~ 370 (376)
T 3ezs_A 307 PYSFYVYLPVQN----------------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIET 370 (376)
T ss_dssp SBSSEEEEECSC----------------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred CcceEEEEECCC----------------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHH
Confidence 677788877631 2567888887 899998752 346788887899999999999999
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
++++
T Consensus 371 ~l~~ 374 (376)
T 3ezs_A 371 YREN 374 (376)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 9865
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=294.62 Aligned_cols=354 Identities=11% Similarity=0.018 Sum_probs=238.7
Q ss_pred CeEEEeeccCEEEEcCCC--EEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC-CCCHHHHHHHHHHHhhCC---C
Q 011959 82 PIVFDSVKGSHMWDIDGN--EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP---S 154 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~--~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~-~~~~~~~~la~~l~~~~~---~ 154 (474)
.++..+++|+++||.+|+ ++|||..+. ..++ .+|++++++.+++.+.. .|. ...+++.++++++.+.++ +
T Consensus 12 ~~~~~~~~g~~~~d~~g~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~ 88 (392)
T 3b1d_A 12 TAPNRLSHHTYKWKETETDPQLLPAWIAD--MDFE-VMPEVKQAIHDYAEQLVYGYTYASDELLQAVLDWEKSEHQYSFD 88 (392)
Confidence 455678999999999999 999998873 2333 68999999999986532 222 134556667776665553 4
Q ss_pred CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHH
Q 011959 155 IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS 234 (474)
Q Consensus 155 ~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~ 234 (474)
.++|++++||++|++.+++.. ..++++|++.+++||+....+.. .|..+..++.....+ .+. .|++
T Consensus 89 ~~~v~~~~g~~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~g--------~~~---~d~~ 154 (392)
T 3b1d_A 89 KEDIVFVEGVVPAISIAIQAF--TKEGEAVLINSPVYPPFARSVRL-NNRKLVSNSLKEENG--------LFQ---IDFE 154 (392)
Confidence 679999999999999999953 34567899999999997654332 222221111100000 000 1678
Q ss_pred HHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC----ccccc--cCCCC
Q 011959 235 ALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQEY--FGVTP 307 (474)
Q Consensus 235 ~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~----~~~~~--~g~~p 307 (474)
+|++.+++. ++++|+++.++|++|.+.+.+ ++++|+++|++||++||+||+|++| +.+.. ..... .+..+
T Consensus 155 ~l~~~l~~~--~~~~v~~~~~~nptG~~~~~~-~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i 231 (392)
T 3b1d_A 155 QLENDIVEN--DVKLYLLCNPHNPGGRVWERE-VLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFAL 231 (392)
Confidence 888888632 567777777778888876654 5999999999999999999999988 65521 11111 34445
Q ss_pred ceeehhhhcC-CCcceEEEEecH-HHHHhhcCCCCcccccC-CCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHH
Q 011959 308 DLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGPMYQAGT-LSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQ 382 (474)
Q Consensus 308 di~t~sK~l~-~G~~iG~~~~~~-~i~~~~~~~~~~~~~~t-~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~ 382 (474)
++.+|||+++ +|+|+||+++++ ++++.+.. .....+ .+.|+++++++.++|+..++ ++..++++++.+++.+
T Consensus 232 ~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (392)
T 3b1d_A 232 VLSSATKTFNIAGTKNSYAIIENPTLCAQFKH---QQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVE 308 (392)
Confidence 6778999999 899999998865 58887763 222222 35688999999998874322 3444445555555555
Q ss_pred HHHHHhhhcCCeeEEeeeceeE-EEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecC
Q 011959 383 GIIDAGKKAGHAICGGYISGMF-GFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLA 454 (474)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~ 454 (474)
.|++. .+....+++.|.++ ++++... .....++.+.|+ ++||++.++. ...+|+++.
T Consensus 309 ~l~~~---~~~~~~~~~~~~~~~~i~~~~~------------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~ 373 (392)
T 3b1d_A 309 YFAQE---APRLKVMKPQGTYLIWLDFSDY------------GLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIA 373 (392)
Confidence 55441 22222345555554 4665321 011246778887 7899998753 235788888
Q ss_pred CcHHHHHHHHHHHHHHHhh
Q 011959 455 HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 455 ~t~e~i~~~l~~l~~~~~~ 473 (474)
.++++|++++++|++++++
T Consensus 374 ~~~e~i~~~l~~l~~~l~~ 392 (392)
T 3b1d_A 374 APKSLVEEICKRIVCCLPK 392 (392)
Confidence 8999999999999988753
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=270.31 Aligned_cols=338 Identities=13% Similarity=0.108 Sum_probs=229.1
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-C-CCC---CCCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-T-SFG---APCLLENVLAEMVISAVP---SI-EMVRFVNSGTE 166 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~-~~~---~~~~~~~~la~~l~~~~~---~~-~~v~~~~sGse 166 (474)
.+|+++|||.+|. +.++ .+|.+.+++.+++++. . .|+ +..+++.++++++.+.++ .. ++|++++||++
T Consensus 34 ~~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 34 RRGEDIIDLSMGN--PDGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp HTTCCCEECSSCC--CCSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred hcCCCEEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 4688899999886 4566 7899999999987653 2 232 134667777777766544 34 69999999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
|++.+++.. ..++++|++.+++||++...+. ..|..+..++.....++ . .|+++|++.++. +
T Consensus 111 a~~~~~~~~--~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~---------~---~d~~~l~~~i~~---~ 172 (412)
T 2x5d_A 111 GLAHLMLAT--LDHGDTILVPNPSYPIHIYGAV-IAGAQVRSVPLVPGIDF---------F---NELERAIRESIP---K 172 (412)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCHHHHHHHH-HHTCEEEEEECSTTSCH---------H---HHHHHHHHTEES---C
T ss_pred HHHHHHHHh--CCCCCEEEEcCCCchhHHHHHH-HcCCEEEEeecCCccCC---------C---CCHHHHHHhccc---C
Confidence 999999952 2345789999999998655443 33432221111000000 0 156778877762 4
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-cc-ccc---cCCCCceeehhhhcC-CC
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GA-QEY---FGVTPDLTTLGKIIG-GG 319 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~-~~~---~g~~pdi~t~sK~l~-~G 319 (474)
+++|+++.++|++|.+.+ .+++++|.++|++||++||+||+|+++ +.|.. .. ... .+....+.++||.++ +|
T Consensus 173 ~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (412)
T 2x5d_A 173 PRMMILGFPSNPTAQCVE-LDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG 251 (412)
T ss_dssp CSEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT
T ss_pred ceEEEECCCCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcc
Confidence 566666555677888765 566999999999999999999999988 55531 11 121 233333558999999 89
Q ss_pred cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
+|+||+++++++++.+. ......+++.|+++++++.++|+..++ +...++++++.+++.+.|++. ++.. .
T Consensus 252 ~r~G~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~ 323 (412)
T 2x5d_A 252 WRIGFMVGNPELVSALA---RIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA----GWMV-E 323 (412)
T ss_dssp SCCEEEEECHHHHHHHH---HHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH----TCCC-C
T ss_pred cceEEEEcCHHHHHHHH---HHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCEe-c
Confidence 99999999999998886 233445788999999999999875422 345566666777777777664 3222 2
Q ss_pred eee-ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC------CcceEEecCCcHHHHHHHHHHHHH
Q 011959 398 GYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 398 ~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
++. |.++++.+... .. ......+.+.|++ +||++.++. ...+|+++..+++++++++++|++
T Consensus 324 ~~~~g~~~~~~~~~~-~~---------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~ 393 (412)
T 2x5d_A 324 NPKASMYVWAKIPEP-YA---------HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKA 393 (412)
T ss_dssp CCSBSSEEEEECCTT-TG---------GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred CCCeeeEEEEEcCCc-cC---------CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 333 55677776321 00 0012567888875 699998763 346789888899999999999999
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
++++
T Consensus 394 ~l~~ 397 (412)
T 2x5d_A 394 MFRA 397 (412)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9865
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-31 Score=269.24 Aligned_cols=334 Identities=13% Similarity=0.143 Sum_probs=231.9
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc----CCCC---CCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFG---APCLLENVLAEMVISAVP--SIEMVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~---~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~ 168 (474)
+..+|||.+|... ..+++++++.+++.+++++. ..|+ +..+++.++++++.+.++ ..++|++++||++|+
T Consensus 75 ~~~~i~l~~g~p~-~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLPN-PKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCCC-GGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCCC-chhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 4568999988643 34578899999999988752 2333 234677777777755544 368999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC----CCHHHHHHHHh---
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFE--- 241 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~d~~~le~~l~--- 241 (474)
+.+++.. ...++.|++.+++|+++...+ ...|.. ++.+|. .|+++|++.++
T Consensus 154 ~~~~~~l--~~~Gd~Vlv~~p~y~~~~~~~-~~~g~~-------------------~~~v~~~~~g~d~~~L~~~l~~~~ 211 (448)
T 3aow_A 154 DLIGRVF--LNPGDIVVVEAPTYLAALQAF-NFYEPQ-------------------YIQIPLDDEGMKVEILEEKLKELK 211 (448)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHHH-HTTCCE-------------------EEEEEEETTEECHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCCEEEEeCCChHHHHHHH-HHcCCE-------------------EEEeccCCCCCCHHHHHHHHhhhh
Confidence 9999952 344688999999999865443 223322 222222 28999999987
Q ss_pred -cCCCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC----ccccccCCCCceeehhh
Q 011959 242 -NNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQEYFGVTPDLTTLGK 314 (474)
Q Consensus 242 -~~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~----~~~~~~g~~pdi~t~sK 314 (474)
+. .++++|++.| .+|++|.+.+ .+++++|.++|++||++||+||+|+++ +.|.. ...+..+..+++.+|||
T Consensus 212 ~~~-~~~k~v~~~~~~~NPtG~~~~-~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK 289 (448)
T 3aow_A 212 SQG-KKVKVVYTVPTFQNPAGVTMN-EDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSK 289 (448)
T ss_dssp HTT-CCEEEEEECCSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTT
T ss_pred ccC-CCCeEEEECCCCCCCcCCCCC-HHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchh
Confidence 42 3678876555 5566887765 566999999999999999999999988 55432 12222233455669999
Q ss_pred hcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHh--cC--CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 315 IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 315 ~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~--~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
.+++|+|+||+++++++++.+.. .....+++.|+++++++.++|+.. .+ +...+.++++.+++.+.|++....
T Consensus 290 ~~~~GlriG~v~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 366 (448)
T 3aow_A 290 ILAPGFRIGWMVGDPGIIRKMEI---AKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPE 366 (448)
T ss_dssp TTCGGGCCEEEEECHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred hccccccEEEEEeCHHHHHHHHH---HHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999988862 334446778999999999888742 11 233444445555555555543110
Q ss_pred cCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--------CcceEEecCC-cHHHHH
Q 011959 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQ 461 (474)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~~~~~~-t~e~i~ 461 (474)
++....+..|+++++.+... ....++.+.|+++||++.|+. ...+|+++.. ++++|+
T Consensus 367 -g~~~~~p~~g~~~~v~~~~~-------------~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~ 432 (448)
T 3aow_A 367 -GVKWTKPEGGMFIWVTLPDG-------------IDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIM 432 (448)
T ss_dssp -TCEECCCSBSSEEEEECSTT-------------CCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHH
T ss_pred -CeEEeCCCccEEEEEEcCCC-------------CCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHH
Confidence 22222234577788877421 012578889999999998752 2457887665 899999
Q ss_pred HHHHHHHHHHhh
Q 011959 462 HTITAAEKVLRQ 473 (474)
Q Consensus 462 ~~l~~l~~~~~~ 473 (474)
+++++|.+++++
T Consensus 433 ~~~~~L~~~l~~ 444 (448)
T 3aow_A 433 EGIKRLAETIKE 444 (448)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998865
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=263.29 Aligned_cols=357 Identities=13% Similarity=0.088 Sum_probs=238.2
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---CCCC---CCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGA---PCLLENVLAEMVISAVP---SI-EMVRFVNSGTEAC 168 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~---~~~~~~~la~~l~~~~~---~~-~~v~~~~sGseA~ 168 (474)
..+|||..|. ..++ .+|.|++++.+++.+.. .|+. ..+++.++++++.+.++ .. ++|++++||++|+
T Consensus 28 ~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 28 HDVVNLGQGF--PDFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp SCCEECCCSS--CSSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CCceEeCCCC--CCCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 3578888874 2333 78999999999998632 3332 34778888888887654 23 6899999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCC---CCCCCCCCCCceEEccCCCHHHHHHHHhcCCC
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD---SPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~---~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (474)
+.+++.. ..+++.|++.+++||++... +...|..+..++... ..|.... ...+. -|+++|++.++ +
T Consensus 105 ~~~~~~~--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~~~G~~~~--~~~~~---~d~~~l~~~~~---~ 173 (422)
T 3fvs_A 105 FTAFQAL--VDEGDEVIIIEPFFDCYEPM-TMMAGGRPVFVSLKPGPIQNGELGS--SSNWQ---LDPMELAGKFT---S 173 (422)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECBCCCCCSSSCCB--GGGSB---CCHHHHHTTCC---T
T ss_pred HHHHHHH--cCCCCEEEEcCCCchhhHHH-HHHcCCEEEEEeccccccccccccc--ccCCC---CCHHHHHhhcC---C
Confidence 9999953 44567899999999996543 333444332221111 0110000 00000 17899988876 3
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-cccccc----CCCCceeehhhhcC-C
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----GVTPDLTTLGKIIG-G 318 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~----g~~pdi~t~sK~l~-~ 318 (474)
++++|++++++|++|.+.+ .+.+++|+++|++||++||+||+|++| +.+.. .....+ +...++.++||.++ +
T Consensus 174 ~~~~v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~ 252 (422)
T 3fvs_A 174 RTKALVLNTPNNPLGKVFS-REELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSAT 252 (422)
T ss_dssp TEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCG
T ss_pred CceEEEECCCCCCCCcCCC-HHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCc
Confidence 6888888888888998885 455999999999999999999999988 65532 222222 22234458999999 7
Q ss_pred CcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011959 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTYEYLNKITGELTQGIIDAGKKAGH 393 (474)
Q Consensus 319 G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (474)
|+|+||+++++++++.+. ......+++.|+++++++.++|+. ...++..+++.+..+..++.|.+.+.++++
T Consensus 253 G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 329 (422)
T 3fvs_A 253 GWKVGWVLGPDHIMKHLR---TVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGL 329 (422)
T ss_dssp GGCCEEEECCHHHHHHHH---HHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cceEEEEEeCHHHHHHHH---HHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999998876 334556788999999999999975 112344444444444444444444444555
Q ss_pred eeEEeeeceeEEEEEecCCCcCcccc-cccchHHHHHHHHHHH-HCCeEecccC-----------CcceEEecCCcHHHH
Q 011959 394 AICGGYISGMFGFFFTEGPVYNFEDA-KKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDDI 460 (474)
Q Consensus 394 ~~~v~~~g~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~Gv~v~~~~-----------~~~~~~~~~~t~e~i 460 (474)
....+..|.++++.+..... +..+. ...+.....++.+.++ ++||++.++. ...+|+++..++++|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i 408 (422)
T 3fvs_A 330 KPIIPQGSYFLITDISDFKR-KMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATL 408 (422)
T ss_dssp EEEBCSBSSEEEEECHHHHH-HCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHH
T ss_pred eecCCCeeeEEEEechhhcc-cccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHHHH
Confidence 54556667777777643100 00000 0000001245666655 5799998753 245789999999999
Q ss_pred HHHHHHHHHHHhhC
Q 011959 461 QHTITAAEKVLRQI 474 (474)
Q Consensus 461 ~~~l~~l~~~~~~~ 474 (474)
++++++|+++++++
T Consensus 409 ~~~l~~l~~~l~~l 422 (422)
T 3fvs_A 409 QAMDEKLRKWKVEL 422 (422)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998764
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.7e-31 Score=263.38 Aligned_cols=329 Identities=13% Similarity=0.090 Sum_probs=233.7
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-----CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-----TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTE 166 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGse 166 (474)
|+++|||..+ ++....+|.+.+++.+++++. ..|+ +..+++.++++++.+.++ +.++|++++||++
T Consensus 34 ~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~ 110 (398)
T 3ele_A 34 KENVYDFSIG---NPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAA 110 (398)
T ss_dssp GGGCEECCSC---CCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred CCCeEEeecC---CCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHH
Confidence 4678999988 554457999999999998763 2332 225778888888877654 4689999999999
Q ss_pred HHHHHHHHhHhhcCC-cEEEEEeCCCCCCchhHHHhcCCCCccCCCCCC-CCCCCCCCCceEEccCCCHHHHHHHHhcCC
Q 011959 167 ACMGVLRLARAFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNK 244 (474)
Q Consensus 167 A~~~al~~ar~~~~~-~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~-~g~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (474)
|++.+++.. ...+ ++|++.+++|+++...+ ...|..+..++.... .++ |+++|++.++.
T Consensus 111 al~~~~~~l--~~~g~d~vl~~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~~~--------------d~~~l~~~l~~-- 171 (398)
T 3ele_A 111 SLSICFRAL--TSDAYDEFITIAPYFPEYKVFV-NAAGARLVEVPADTEHFQI--------------DFDALEERINA-- 171 (398)
T ss_dssp HHHHHHHHH--CCSTTCEEEEESSCCTHHHHHH-HHTTCEEEEECCCTTTSSC--------------CHHHHHHTCCT--
T ss_pred HHHHHHHHH--cCCCCCEEEEeCCCchhhHHHH-HHcCCEEEEEecCCcCCcC--------------CHHHHHHHhCc--
Confidence 999999953 3344 78999999998865433 333433322211100 011 79999988863
Q ss_pred CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH------hCCEEEEeccccCc-ccCCC--ccccccCCCCceeehhhh
Q 011959 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE------NGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDLTTLGKI 315 (474)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~------~g~llI~DEv~~g~-r~g~~--~~~~~~g~~pdi~t~sK~ 315 (474)
++++|+++.++|++|.+.+.++ +++|.++|++ ||++||+||+|++| +.+.. ...+.++....+.++||+
T Consensus 172 -~~~~v~~~~p~nptG~~~~~~~-l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 249 (398)
T 3ele_A 172 -HTRGVIINSPNNPSGTVYSEET-IKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKS 249 (398)
T ss_dssp -TEEEEEECSSCTTTCCCCCHHH-HHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTT
T ss_pred -CCCEEEEcCCCCCCCCCCCHHH-HHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhc
Confidence 6788888777888998887666 9999999999 99999999999988 65532 222333333445589999
Q ss_pred cC-CCcceEEEEecHHHHH------hhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Q 011959 316 IG-GGLPVGAYGGRRDIME------MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388 (474)
Q Consensus 316 l~-~G~~iG~~~~~~~i~~------~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~ 388 (474)
++ +|+|+||+++++++++ .+.. .....++++.+++++.++.+.++ +....++++++++++.+.|+++
T Consensus 250 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~~~- 323 (398)
T 3ele_A 250 LSLPGERIGYVLVPDEVYDKAELYAAVCG--AGRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLTRI- 323 (398)
T ss_dssp SSCTTTCCEEEECCTTSTTHHHHHHHHHH--HHHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHHHH-
T ss_pred CCCccceeEEEEEcchhhhHHHHHHHHHH--HhhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHc-
Confidence 99 8999999999887433 2221 01122356677788777666553 4456788899999999999876
Q ss_pred hhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHH
Q 011959 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTI 464 (474)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l 464 (474)
++....+..|.++++.+... ....+.+.|.++||++.++. ...+|+++.+++++|++++
T Consensus 324 ---g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~~~~e~i~~~l 386 (398)
T 3ele_A 324 ---GYHCFKPDGAFYMFVKALED--------------DSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCVDREMIKHSM 386 (398)
T ss_dssp ---TCCEECCSBSSEEEEECSSS--------------CHHHHHHHHHTTTEECEESGGGTCTTEEEEECCSCHHHHHHHH
T ss_pred ---CCeecCCCeeEEEEEEcCCC--------------CHHHHHHHHHHCCEEEeCccccCCCCeEEEEecCCHHHHHHHH
Confidence 33222233445577765321 12567888899999998864 3468898889999999999
Q ss_pred HHHHHHHhh
Q 011959 465 TAAEKVLRQ 473 (474)
Q Consensus 465 ~~l~~~~~~ 473 (474)
++|++++++
T Consensus 387 ~~l~~~l~~ 395 (398)
T 3ele_A 387 PAFEKIYKK 395 (398)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9.3e-32 Score=266.46 Aligned_cols=328 Identities=16% Similarity=0.090 Sum_probs=218.5
Q ss_pred EEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHH
Q 011959 94 WDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVL 172 (474)
Q Consensus 94 ~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al 172 (474)
++.+|+++|||.++. +++| .+|++++++.+++++...| +.....++.+.++++++ ..+++++++||++|++.++
T Consensus 19 ~~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~ 93 (364)
T 1lc5_A 19 LGISPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIERY--PDADYFHLHQALARHHQVPASWILAGNGETESIFTVA 93 (364)
T ss_dssp HTSCGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGGSC--CCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHH
T ss_pred cCCCccceEEecccc--CCCC-CCHHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHH
Confidence 346788999999886 4577 7899999999988653333 23334667777777665 4579999999999999999
Q ss_pred HHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE
Q 011959 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
+.+ .+++|++.+++||++...+. ..|..+...+.....++ +.++++.+.+. +++++|++
T Consensus 94 ~~~----~gd~vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~-------------~~l~~~~~~~~---~~~~~v~i 152 (364)
T 1lc5_A 94 SGL----KPRRAMIVTPGFAEYGRALA-QSGCEIRRWSLREADGW-------------QLTDAILEALT---PDLDCLFL 152 (364)
T ss_dssp HHH----CCSEEEEEESCCTHHHHHHH-HTTCEEEEEECCGGGTT-------------CCCTTHHHHCC---TTCCEEEE
T ss_pred HHc----CCCeEEEeCCCcHHHHHHHH-HcCCeEEEEeCCccccc-------------chhHHHHHhcc---CCCCEEEE
Confidence 954 44899999999999655443 33432221111100011 00232333332 34566665
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccc---cCCCCceeehhhhcC-CCcceEEEE-
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY---FGVTPDLTTLGKIIG-GGLPVGAYG- 326 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~---~g~~pdi~t~sK~l~-~G~~iG~~~- 326 (474)
..++|++|.+.+ .+++++|.++|++||++||+||+|++| +.+.. ..+. ++....+.++||.++ +|+|+||++
T Consensus 153 ~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 230 (364)
T 1lc5_A 153 CTPNNPTGLLPE-RPLLQAIADRCKSLNINLILDEAFIDFIPHETG-FIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVN 230 (364)
T ss_dssp ESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCC-SGGGCTTCTTEEEEEESTTTTTCTTTCCEEEEC
T ss_pred eCCCCCCCCCCC-HHHHHHHHHHhhhcCcEEEEECcChhhccCccc-hhhHhccCCCEEEEEECchhhcCCccceEEEEE
Confidence 444777887765 566999999999999999999999988 43322 1222 233333458999999 899999999
Q ss_pred ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEE
Q 011959 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (474)
Q Consensus 327 ~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (474)
+++++++.+... ..+++.|+++++++.++|+. .+..++.++..+..++.|.+.+.+++.....++.|.++++
T Consensus 231 ~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 302 (364)
T 1lc5_A 231 SDDAAMARMRRQ-----QMPWSVNALAALAGEVALQD---SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLL 302 (364)
T ss_dssp CCHHHHHHHHHH-----SCTTCSCHHHHHHHHHGGGC---HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSSEEEE
T ss_pred CCHHHHHHHHHh-----CCCCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCeEEEE
Confidence 999999888631 23678899999998888764 2233343333333444444433344323334567888887
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+... ...+.+.|.++||++.++. ...+|+++. +++++++++++|++++++
T Consensus 303 ~~~~~---------------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 303 RCERE---------------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp EESCT---------------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC--
T ss_pred ECCCc---------------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHHHHhhc
Confidence 76421 1357788889999998863 245788865 688899999999988754
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=5e-31 Score=263.68 Aligned_cols=331 Identities=16% Similarity=0.161 Sum_probs=234.8
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~ 169 (474)
.|+++|||.++. ..+++ +|.+.+++.+++++.. .|+ +..+++.++++++.+.++ ..+++++++||++|++
T Consensus 39 ~g~~~i~l~~~~--~~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGE--PDFPT-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSS--CSSCC-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCC--CCCCC-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 477889998885 34664 7999999999987642 332 235677788888876543 4679999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-CCHHHHHHHHhcCCCCeE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGEIA 248 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~a 248 (474)
.+++.. ..++++|++.+++|+++...+ ...|..+..++.....+ + -|+++|++.++. +++
T Consensus 116 ~~~~~l--~~~gd~Vl~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~-------------~~~d~~~l~~~l~~---~~~ 176 (389)
T 1o4s_A 116 NAFMAL--LDPGDEVIVFSPVWVSYIPQI-ILAGGTVNVVETFMSKN-------------FQPSLEEVEGLLVG---KTK 176 (389)
T ss_dssp HHHHHH--CCTTCEEEEEESCCTTHHHHH-HHTTCEEEEEECCGGGT-------------TCCCHHHHHHTCCT---TEE
T ss_pred HHHHHh--CCCCCEEEEcCCCchhHHHHH-HHcCCEEEEEecCCccC-------------CCCCHHHHHHhccc---Cce
Confidence 999953 344678999999999865443 33443222211110000 1 178999988863 578
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcccccc----CCCCceeehhhhcC-CCcce
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF----GVTPDLTTLGKIIG-GGLPV 322 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~----g~~pdi~t~sK~l~-~G~~i 322 (474)
+|++++++|++|.+.+ .+++++|.++|++||++||+||+|+++ ..+.......+ +....+.++||.++ +|+|+
T Consensus 177 ~v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 255 (389)
T 1o4s_A 177 AVLINSPNNPTGVVYR-REFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRV 255 (389)
T ss_dssp EEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCC
T ss_pred EEEEcCCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccce
Confidence 8888877888898765 456999999999999999999999988 54432222222 22222448999998 79999
Q ss_pred EEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeece
Q 011959 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 402 (474)
Q Consensus 323 G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~ 402 (474)
||+++++++++.+. ......+++.+++++.++.++|+.. .+++.++++++.+++.+.|+++ ...+. .+..|.
T Consensus 256 G~l~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~ 327 (389)
T 1o4s_A 256 GYLISSEKVATAVS---KIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM--GVKFV--EPEGAF 327 (389)
T ss_dssp EEEECCHHHHHHHH---HHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT--TCCCC--CCSBSS
T ss_pred EEEEeCHHHHHHHH---HHhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc--CCeee--cCCcce
Confidence 99999999988876 3334457788999998888877532 2456777788888888888775 22221 123355
Q ss_pred eEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++++.+. . + ..++.+.|+ ++||++.++. .+.+|+++..+++++++++++|++++++
T Consensus 328 ~~~~~~~-~-----------~---~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 328 YLFFKVR-G-----------D---DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLNS 388 (389)
T ss_dssp EEEEECS-S-----------C---HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred EEEEeCC-C-----------C---HHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 5666652 0 0 256788887 8899998763 2467888888999999999999998864
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=5.6e-31 Score=263.01 Aligned_cols=337 Identities=12% Similarity=0.114 Sum_probs=234.3
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~ 169 (474)
+|+++|||.+|. ..++ .+|.+.+++.++++++. .|+. ..+++.++++++.+.++ +.+++++++||++|++
T Consensus 28 ~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 104 (388)
T 1j32_A 28 EGIDVCSFSAGE--PDFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEECCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence 678899999885 3455 68999999999987642 3322 35677888888876543 4678999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (474)
.+++.. ..++++|++.+++||++... +...|..+..++.....+. ..|+++|++.++. ++++
T Consensus 105 ~~~~~~--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~---~~~~ 166 (388)
T 1j32_A 105 NLMLAM--IEPGDEVIIPAPFWVSYPEM-VKLAEGTPVILPTTVETQF------------KVSPEQIRQAITP---KTKL 166 (388)
T ss_dssp HHHHHH--CCTTCEEEEESSCCTHHHHH-HHHTTCEEEEECCCGGGTT------------CCCHHHHHHHCCT---TEEE
T ss_pred HHHHHh--cCCCCEEEEcCCCChhHHHH-HHHcCCEEEEecCCcccCC------------CCCHHHHHHhcCc---CceE
Confidence 999963 34567899999999985543 3344443322111100000 0179999998863 5788
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccc-----cCCCCceeehhhhcC-CCcc
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY-----FGVTPDLTTLGKIIG-GGLP 321 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~-----~g~~pdi~t~sK~l~-~G~~ 321 (474)
|++++++|++|.+.+ .+.+++|.++|++||++||+||+|++| +.+.. ..... .+..+++.++||.++ +|+|
T Consensus 167 v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r 245 (388)
T 1j32_A 167 LVFNTPSNPTGMVYT-PDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWR 245 (388)
T ss_dssp EEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTC
T ss_pred EEEeCCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccc
Confidence 888888888998875 455999999999999999999999988 54432 11111 334455668999998 7999
Q ss_pred eEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee
Q 011959 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (474)
Q Consensus 322 iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (474)
+||+++++++++.+. .....++++.+++++.++.++|+...+ ++..++++++++++.+.|+++ . ++....+.
T Consensus 246 ~G~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~ 319 (388)
T 1j32_A 246 VGFLAGPVPLVKAAT---KIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM-P--GLECPKPD 319 (388)
T ss_dssp CEEEECCHHHHHHHH---HHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC-T--TCBCCCCC
T ss_pred eEEEEeCHHHHHHHH---HHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC-C--CCcccCCC
Confidence 999999999988876 333455788899999999888874321 334555666666666666542 1 22211122
Q ss_pred eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.|.++++.+... .....++.+.|++ +||++.++. ...+|+++.++++++++++++|++++++
T Consensus 320 ~~~~~~~~~~~~------------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 320 GAFYMFPSIAKT------------GRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp BTTEECCBCGGG------------TCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCCC------------CCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 344444443210 0012567888886 799998763 3568998889999999999999999875
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7.7e-31 Score=265.57 Aligned_cols=337 Identities=13% Similarity=0.034 Sum_probs=231.3
Q ss_pred EEcCCCEEEeccCChhhcc--CCCCCHHHHHHHHHHHHhcCCCCC-C----CHHHHHHHHHHHhhC-C-CCCeEEEeCCH
Q 011959 94 WDIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMKKGTSFGA-P----CLLENVLAEMVISAV-P-SIEMVRFVNSG 164 (474)
Q Consensus 94 ~d~dG~~~iD~~~~~~~~~--lG~~~p~v~~a~~~~~~~~~~~~~-~----~~~~~~la~~l~~~~-~-~~~~v~~~~sG 164 (474)
.+.+|+.+|||..|.. .. -...+|.|++++.+++++....+| + .+++.++++++...- + ..++|++++||
T Consensus 49 ~~~~~~~~i~l~~g~~-~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~ 127 (427)
T 3dyd_A 49 KPNPNKTMISLSIGDP-TVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGC 127 (427)
T ss_dssp CCCTTSCCEECCCSCT-TTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSH
T ss_pred cccCCCCEEeCCCcCC-CccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCc
Confidence 4456889999998852 22 234789999999999987432222 2 344445555443220 0 36799999999
Q ss_pred HHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-------CHHHHH
Q 011959 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-------DVSALE 237 (474)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------d~~~le 237 (474)
++|++.+++.. ..++++|++.+++|+++...+ ...|..+ ..++++ |+++|+
T Consensus 128 t~al~~~~~~l--~~~gd~vl~~~p~~~~~~~~~-~~~g~~~-------------------~~~~~~~~~~~~~d~~~l~ 185 (427)
T 3dyd_A 128 SQAIDLCLAVL--ANPGQNILVPRPGFSLYKTLA-ESMGIEV-------------------KLYNLLPEKSWEIDLKQLE 185 (427)
T ss_dssp HHHHHHHHHHH--CCTTCEEEEEESCCTHHHHHH-HHTTCEE-------------------EEEEEEGGGTTEECHHHHH
T ss_pred HHHHHHHHHHh--cCCCCEEEEcCCCchhHHHHH-HHcCCEE-------------------EEEecccccCCCCCHHHHH
Confidence 99999999963 345688999999998855433 3333322 222211 789998
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccccCCCCcee---eh
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDLT---TL 312 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pdi~---t~ 312 (474)
+.+++ ++++|+++.++|++|.+.+ .+++++|+++|++||+++|+||+|.+| +.+.. .....++..++++ +|
T Consensus 186 ~~l~~---~~~~v~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~ 261 (427)
T 3dyd_A 186 YLIDE---KTACLIVNNPSNPCGSVFS-KRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGL 261 (427)
T ss_dssp SSCCT---TEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEES
T ss_pred HHhcc---CCCEEEEECCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeec
Confidence 88763 4667777666888888765 555999999999999999999999999 66643 2444555556665 89
Q ss_pred hhhcC-CCcceEEEEec-------HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHH
Q 011959 313 GKIIG-GGLPVGAYGGR-------RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELT 381 (474)
Q Consensus 313 sK~l~-~G~~iG~~~~~-------~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~ 381 (474)
||.++ +|+|+||++++ +++++.+.. . ...+++.|+++++++.++|+.... ++..++++++.+++.
T Consensus 262 sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~---~-~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~ 337 (427)
T 3dyd_A 262 AKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVK---L-SQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCY 337 (427)
T ss_dssp TTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHH---H-HHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcCcceEEEEecCcchhhHHHHHHHHHH---H-HhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 99987 69999999887 567776652 1 223678899999999999985322 344555555666666
Q ss_pred HHHHHHhhhcCCeeEE-eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC----CcceEEecCC
Q 011959 382 QGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAH 455 (474)
Q Consensus 382 ~~L~~~~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~~~~~~ 455 (474)
+.|++ ++....+ +..|+++++.+..... ++.....++.+.|+ ++||++.++. ...+|+++.+
T Consensus 338 ~~L~~----~~g~~~~~p~~g~~~~~~l~~~~~--------~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~~ 405 (427)
T 3dyd_A 338 GALAA----IPGLRPVRPSGAMYLMVGIEMEHF--------PEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITV 405 (427)
T ss_dssp HHHHH----STTEEEECCSBTTEEEEEECGGGC--------TTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESCS
T ss_pred HHHhc----CCCceecCCCeeEEEEEecCHhhc--------CCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEECC
Confidence 66654 3323333 4456677777642110 11111246777775 7899998863 3467999999
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011959 456 SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~ 473 (474)
++++|++++++|++++++
T Consensus 406 ~~e~i~~~l~~l~~~l~~ 423 (427)
T 3dyd_A 406 PEVMMLEACSRIQEFCEQ 423 (427)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999999865
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-31 Score=262.76 Aligned_cols=333 Identities=15% Similarity=0.134 Sum_probs=232.0
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCe-EEEeCCHHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEM-VRFVNSGTEACMG 170 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~-v~~~~sGseA~~~ 170 (474)
.++|||..+. ..++ .+|++.+++.+++++.. .|+ +..+++.++++++.+.++ ..++ +++++||++|++.
T Consensus 26 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 26 KDVISLGIGE--PDFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SSCEECCCCS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred cCeEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 3578888875 3455 68999999999997642 333 235677888888876543 4678 9999999999999
Q ss_pred HHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-CHHHHHHHHhcCCCCeEE
Q 011959 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENNKGEIAA 249 (474)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~a~ 249 (474)
+++.. ..++++|++.+++||+.... +...|..+..++.....+ +. |+++|++.++. ++++
T Consensus 103 ~~~~~--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~-------------~~~d~~~l~~~l~~---~~~~ 163 (389)
T 1gd9_A 103 GLSAF--LKDGEEVLIPTPAFVSYAPA-VILAGGKPVEVPTYEEDE-------------FRLNVDELKKYVTD---KTRA 163 (389)
T ss_dssp HHTTT--CCTTCEEEEEESCCTTHHHH-HHHHTCEEEEEECCGGGT-------------TCCCHHHHHHHCCT---TEEE
T ss_pred HHHHh--CCCCCEEEEcCCCchhHHHH-HHHCCCEEEEeccCCccC-------------CCCCHHHHHHhcCc---CceE
Confidence 99842 33467899999999996543 334444332211110000 11 79999998863 5788
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-Ccccccc-CC-CCc--eeehhhhcC-CCcce
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF-GV-TPD--LTTLGKIIG-GGLPV 322 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~-g~-~pd--i~t~sK~l~-~G~~i 322 (474)
|++++++|++|.+.+ .+.+++|.++|++||++||+||+|+++ +.+. ......+ +. ..| +.++||.++ +|+|+
T Consensus 164 v~~~~~~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 242 (389)
T 1gd9_A 164 LIINSPCNPTGAVLT-KKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRL 242 (389)
T ss_dssp EEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCC
T ss_pred EEEECCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccce
Confidence 888777888898765 556999999999999999999999988 5543 2222222 21 234 448999998 79999
Q ss_pred EEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe
Q 011959 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (474)
Q Consensus 323 G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (474)
||+++++++++.+.. .....+++.|++++.++.++|+...+ ++..++++++.+++.+.|++. ++....+
T Consensus 243 G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~ 315 (389)
T 1gd9_A 243 GFVAAPSWIIERMVK---FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM----GLPTVKP 315 (389)
T ss_dssp EEEECCHHHHHHHHH---HHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCCCC
T ss_pred EEEEECHHHHHHHHH---HHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc----CCeecCC
Confidence 999999999988862 33445678899999999888874322 334455556666666666653 3222223
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
..|.++++.+.... ....++.+.|+ ++||++.++. ...+|+++..+++++++++++|++++
T Consensus 316 ~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~ 383 (389)
T 1gd9_A 316 KGAFYIFPRIRDTG------------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVL 383 (389)
T ss_dssp CBTTEECCBCGGGT------------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CeeeEEEEeccCCC------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 33555555553200 01256888888 8999998763 34689988889999999999999998
Q ss_pred hh
Q 011959 472 RQ 473 (474)
Q Consensus 472 ~~ 473 (474)
++
T Consensus 384 ~~ 385 (389)
T 1gd9_A 384 KE 385 (389)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.5e-31 Score=261.97 Aligned_cols=326 Identities=17% Similarity=0.148 Sum_probs=229.1
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhc
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT 179 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~ 179 (474)
+|||.++. ..++ .+|.+.+++.+++++...|+. .....+|.+.++++++ +.+++++++||++|++.+++.+ ..
T Consensus 27 ~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~-~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~--~~ 100 (381)
T 1v2d_A 27 AVNLGQGF--PSNP-PPPFLLEAVRRALGRQDQYAP-PAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSL--VG 100 (381)
T ss_dssp CEECCCCS--CSSC-CCHHHHHHHHHHTTTSCSCCC-TTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--CC
T ss_pred eEEecCCC--CCCC-CCHHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh--CC
Confidence 68888875 3455 689999999999876333322 2234567777777665 4578999999999999999963 45
Q ss_pred CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCC
Q 011959 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (474)
++++|++.+++||++.. .+...|..+..++....+ +.. ..|+++|++.++ +++++|++++++|++
T Consensus 101 ~gd~Vl~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~--------~~~---~~d~~~l~~~l~---~~~~~v~~~~~~npt 165 (381)
T 1v2d_A 101 PGDEVVVLEPFFDVYLP-DAFLAGAKARLVRLDLTP--------EGF---RLDLSALEKALT---PRTRALLLNTPMNPT 165 (381)
T ss_dssp TTCEEEEEESCCTTHHH-HHHHTTCEEEEEECEEET--------TEE---ECCHHHHHTTCC---TTEEEEEEESSCTTT
T ss_pred CCCEEEEcCCCchhHHH-HHHHcCCEEEEEeCCCCC--------ccC---CcCHHHHHHhcC---cCCEEEEECCCCCCC
Confidence 66889999999998654 333344322211110000 000 127999988875 367888888888889
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccc-c-ccCCCCceeehhhhcC-CCcceEEEEecHHHHHh
Q 011959 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-E-YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEM 334 (474)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~-~-~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i~~~ 334 (474)
|.+.+ .+++++|.++|++||++||+||+|++| . |.. ... . ..+..+++.++||.++ +|+|+||+++++++++.
T Consensus 166 G~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~ 243 (381)
T 1v2d_A 166 GLVFG-ERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPR 243 (381)
T ss_dssp CCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHH
T ss_pred CCccC-HHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHH
Confidence 98765 456999999999999999999999988 4 421 111 1 2455666779999998 79999999999999888
Q ss_pred hcCCCCcccccCCCCChHHHHHHHHHHHHh--cC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEec
Q 011959 335 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410 (474)
Q Consensus 335 ~~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~ 410 (474)
+. ......+++.++++++++.++|+.. ++ ++..++++++.+++.+.|++. ++....+..|.++++.+..
T Consensus 244 ~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~ 316 (381)
T 1v2d_A 244 LA---GMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM----GLRVYVPEGTYFLMAELPG 316 (381)
T ss_dssp HH---HHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT----TCCEECCSBSSEEEEECTT
T ss_pred HH---HHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC----CCEecCCCcceEEEEecCh
Confidence 76 2334457788999999999999865 33 445666677777777777663 3332223335666666531
Q ss_pred CCCcCcccccccchHHHHHHHHHHHHCCeEecccC--------CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
. + +.+.+.++||++.++. ...+|+++..+++++++++++|++++++
T Consensus 317 ~----------------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 317 W----------------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNS 370 (381)
T ss_dssp C----------------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC--
T ss_pred H----------------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 1 1 5566779999998752 3467888877999999999999988754
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=269.14 Aligned_cols=332 Identities=15% Similarity=0.125 Sum_probs=224.8
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVL 172 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al 172 (474)
++++|||.++.. ++.|++++.+.+++.+++++. ..|+. .....+|.+.++++++ ..++|++++||++|++.++
T Consensus 31 ~~~~i~l~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~-~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~ 108 (397)
T 2zyj_A 31 RPGILSFAGGLP-APELFPKEEAAEAAARILREKGEVALQYSP-TEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVG 108 (397)
T ss_dssp STTCEEESSCCC-CGGGCCHHHHHHHHHHHHHHHHHHHTSCCC-TTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHH
T ss_pred CCCceecCCCCC-CchhCCHHHHHHHHHHHHHhcchhhhCCCC-CCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHH
Confidence 456899988764 456788999999999988752 23322 1223445555555543 4579999999999999999
Q ss_pred HHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC----CCHHHHHHHHhcCCCCeE
Q 011959 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFENNKGEIA 248 (474)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~a 248 (474)
+.. ..++++|++.+++||+....+. ..|..+ +.+|. .|+++|++.++++ +++
T Consensus 109 ~~~--~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~-------------------~~~~~~~~~~d~~~l~~~l~~~--~~~ 164 (397)
T 2zyj_A 109 KVF--LDEGSPVLLEAPSYMGAIQAFR-LQGPRF-------------------LTVPAGEEGPDLDALEEVLKRE--RPR 164 (397)
T ss_dssp HHH--CCTTCEEEEEESCCHHHHHHHH-TTCCEE-------------------EEEEEETTEECHHHHHHHHHHC--CCS
T ss_pred HHh--CCCCCEEEEeCCCcHHHHHHHH-HcCCEE-------------------EecCcCCCCCCHHHHHHHHhhc--CCe
Confidence 953 2345789999999998654432 233322 22221 2899999999753 456
Q ss_pred EE-EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccccCCC------CceeehhhhcCCC
Q 011959 249 AI-ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVT------PDLTTLGKIIGGG 319 (474)
Q Consensus 249 ~v-i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~------pdi~t~sK~l~~G 319 (474)
+| +++.++|++|.+.+ .+++++|.++|++||++||+||+|++| +.|.. .....++.. ..+.++||++++|
T Consensus 165 ~v~~~~~~~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G 243 (397)
T 2zyj_A 165 FLYLIPSFQNPTGGLTP-LPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG 243 (397)
T ss_dssp CEEECCBSCTTTCCBCC-HHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG
T ss_pred EEEECCCCcCCCCCcCC-HHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccccc
Confidence 66 45556777888765 556999999999999999999999988 65542 222223222 2345899999988
Q ss_pred cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE
Q 011959 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-E--PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (474)
+|+||+++++++++.+.. .....+++.|++++.++.++|+... + +...++++++.+++.+.|++.... ++...
T Consensus 244 ~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-g~~~~ 319 (397)
T 2zyj_A 244 LRVAFAVAHPEALQKLVQ---AKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPK-EVRYT 319 (397)
T ss_dssp GCCEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCT-TSEEC
T ss_pred ceeEEEecCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CeEEc
Confidence 999999999999888762 2334456779999999888886321 0 223344444555555555443110 22222
Q ss_pred EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--------CcceEEecCC-cHHHHHHHHHHH
Q 011959 397 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQHTITAA 467 (474)
Q Consensus 397 v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~~~~~~-t~e~i~~~l~~l 467 (474)
.+..|.++++.+... ....++.+.|.++||++.++. ...+|+++.. +++++++++++|
T Consensus 320 ~~~~g~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l 386 (397)
T 2zyj_A 320 RPKGGMFVWMELPKG-------------LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRL 386 (397)
T ss_dssp CCSBSSEEEEECSTT-------------CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHH
T ss_pred cCCccEEEEEEcCCC-------------CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Confidence 245577788777421 012578889999999998752 2457887665 799999999999
Q ss_pred HHHHhh
Q 011959 468 EKVLRQ 473 (474)
Q Consensus 468 ~~~~~~ 473 (474)
++++++
T Consensus 387 ~~~l~~ 392 (397)
T 2zyj_A 387 GRALKG 392 (397)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=269.51 Aligned_cols=336 Identities=13% Similarity=0.160 Sum_probs=236.2
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc----CCCCC---CCHHHHHHHHHHHhhCC----CCCeEEEeCCHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGA---PCLLENVLAEMVISAVP----SIEMVRFVNSGTE 166 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~---~~~~~~~la~~l~~~~~----~~~~v~~~~sGse 166 (474)
++++|||.+|.. ++.|++++.+.+++.+++++. ..|+. ..+++.++++++.++++ +.++|++++||++
T Consensus 42 ~~~~idl~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVP-DPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSC-CGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCC-CcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 557899998864 456889999999999998752 33432 35778888888866533 3578999999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC----CCHHHHHHHHhc
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFEN 242 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~d~~~le~~l~~ 242 (474)
|++.+++.. ..++++|++.+++||++...+. ..|..+ +.+|. .|+++|++.+++
T Consensus 121 al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~-------------------~~v~~~~~~~d~~~l~~~l~~ 178 (425)
T 1vp4_A 121 ALDLIGKLF--LDDESYCVLDDPAYLGAINAFR-QYLANF-------------------VVVPLEDDGMDLNVLERKLSE 178 (425)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCHHHHHHHH-TTTCEE-------------------EEEEEETTEECHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCCEEEEeCCCcHHHHHHHH-HcCCEE-------------------EEeccCCCCCCHHHHHHHHHh
Confidence 999999942 2345789999999998654432 233322 22221 289999998874
Q ss_pred C-----CCCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccccCCCC---ceee
Q 011959 243 N-----KGEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTP---DLTT 311 (474)
Q Consensus 243 ~-----~~~~a~vi-~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~p---di~t 311 (474)
. +.++++|+ +..++|++|.+.+ .+++++|.++|++||++||+||+|++| +.+.. .....++..+ .+.+
T Consensus 179 ~~~~~~~~~~~~v~~~~~~~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s 257 (425)
T 1vp4_A 179 FDKNGKIKQVKFIYVVSNFHNPAGVTTS-LEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNT 257 (425)
T ss_dssp HHHTTCGGGEEEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEE
T ss_pred hhhcccCCCceEEEECCCCCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEec
Confidence 1 12577774 5556677888765 556999999999999999999999988 55532 2222222222 2458
Q ss_pred hhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHh--cC--CCHHHHHHHHHHHHHHHHHHH
Q 011959 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~--~~~~~~~~~~~~~l~~~L~~~ 387 (474)
+||++++|+|+||+++++++++.+.. .....+++.|+++++++.++|+.. ++ +...++++++.+++.+.|++.
T Consensus 258 ~sK~~~~G~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 334 (425)
T 1vp4_A 258 FSKVLAPGLRIGMVAGSKEFIRKIVQ---AKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEY 334 (425)
T ss_dssp STTTTCGGGCEEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccceEEEeeCHHHHHHHHH---HhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999989999999999999888762 233445677999999999999864 11 345556667777777777665
Q ss_pred hhhc-CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--------CcceEEecCC-cH
Q 011959 388 GKKA-GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SS 457 (474)
Q Consensus 388 ~~~~-~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~~~~~~-t~ 457 (474)
...+ ++....+..|.++++.+.... + ..++.+.|+++||++.++. ...+|+++.. ++
T Consensus 335 ~~~~~g~~~~~~~~g~~~~~~~~~~~----------~---~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~ 401 (425)
T 1vp4_A 335 FSDIPGVKWVKSEGGLFIWLTLPEGF----------D---TWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPD 401 (425)
T ss_dssp STTSTTCEECCCSBSSEEEEECCTTC----------C---TTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCH
T ss_pred CCCCCceEEecCCccEEEEEEcCCCC----------C---HHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCCCH
Confidence 2211 222222455778888774310 0 1357788888899998752 2457887665 79
Q ss_pred HHHHHHHHHHHHHHhh
Q 011959 458 DDIQHTITAAEKVLRQ 473 (474)
Q Consensus 458 e~i~~~l~~l~~~~~~ 473 (474)
+++++++++|++++++
T Consensus 402 e~i~~~l~~l~~~l~~ 417 (425)
T 1vp4_A 402 EKIVEGIKRLREVVLE 417 (425)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-31 Score=267.61 Aligned_cols=335 Identities=12% Similarity=0.082 Sum_probs=232.3
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCC---CCCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SI-EMVRFVNSGTE 166 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~---~~~~~~~~la~~l~~~~~---~~-~~v~~~~sGse 166 (474)
..|+++|||.+|. +.+| .+|.+.+++.+++++. ..|+ ...+++.++++++.+.++ .+ ++|++++||++
T Consensus 44 ~~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~ 120 (404)
T 2o1b_A 44 HGPLPLINMAVGI--PDGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN 120 (404)
T ss_dssp CCSSCCEECCCCS--CSSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred cCCCCEEecCCcC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence 3578899999886 3566 6899999999987542 1232 235677777777766555 22 68999999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
|++.+++.. ..++++|++.+++||++...+ ...|..+..++... .++ ..|+++|++.++. +
T Consensus 121 al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~-~~~------------~~d~~~l~~~l~~---~ 181 (404)
T 2o1b_A 121 GLVAVPTCV--INPGDYVLLPDPGYTDYLAGV-LLADGKPVPLNLEP-PHY------------LPDWSKVDSQIID---K 181 (404)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCSSHHHHH-HHTTCEEEEEECCT-TTC------------CCCGGGSCHHHHH---H
T ss_pred HHHHHHHHh--cCCCCEEEEcCCCchhHHHHH-HHCCCEEEEeccCc-ccC------------cCCHHHHHHhhcc---C
Confidence 999999952 234578999999999966544 33444332221111 111 0267888888862 5
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-ccc---cCCCCceeehhhhcC-CCc
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEY---FGVTPDLTTLGKIIG-GGL 320 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~---~g~~pdi~t~sK~l~-~G~ 320 (474)
+++|+++.++|++|.+.+ .+++++|.++|++||++||+||+|++| +.+.... ... .+....+.++||+++ +|+
T Consensus 182 ~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 260 (404)
T 2o1b_A 182 TKLIYLTYPNNPTGSTAT-KEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF 260 (404)
T ss_dssp EEEEEECSSCTTTCCCCC-HHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGG
T ss_pred ceEEEEcCCCCCCCccCC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchh
Confidence 788888766777888765 556999999999999999999999988 5443211 111 122234558999998 899
Q ss_pred ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe
Q 011959 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (474)
|+||+++++++++.+. ......+++.|+++++++.++|+..++ +...++++++.+++.+.|++. ++....+
T Consensus 261 r~G~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~ 333 (404)
T 2o1b_A 261 RVGFAVGNKDMIQALK---KYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA----DLPFVHA 333 (404)
T ss_dssp CCEEEEECHHHHHHHH---HHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCEECC
T ss_pred heEeEecCHHHHHHHH---HHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc----CCeecCC
Confidence 9999999999998886 233445678899999999999876321 334455555666666666553 4332222
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
..|.++++.+... . ...++.+.|+ ++||++.++. ...+|+++..+++++++++++|++++
T Consensus 334 ~~g~~~~~~~~~~-~------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l 400 (404)
T 2o1b_A 334 KGGIYVWLETPPG-Y------------DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELA 400 (404)
T ss_dssp CBSSEEEEECCTT-C------------CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGG
T ss_pred CcceEEEEeCCCC-C------------CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 3355677776421 0 1246778877 5799998763 34678988889999999999999887
Q ss_pred hh
Q 011959 472 RQ 473 (474)
Q Consensus 472 ~~ 473 (474)
++
T Consensus 401 ~~ 402 (404)
T 2o1b_A 401 YL 402 (404)
T ss_dssp GG
T ss_pred Hh
Confidence 65
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-30 Score=260.09 Aligned_cols=329 Identities=15% Similarity=0.113 Sum_probs=227.9
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGV 171 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~---~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~~~a 171 (474)
.+|||..+. ..++ .+|.+.+++.++++++ ..|+. ..+++.++++++.+.++ +.+ ++++++||++|++.+
T Consensus 31 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~ 107 (386)
T 1u08_A 31 QAINLSQGF--PDFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAA 107 (386)
T ss_dssp TCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHH
T ss_pred CeEEecCCC--CCCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHH
Confidence 468888775 3455 6899999999998763 23322 35677788888776543 466 999999999999999
Q ss_pred HHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEE
Q 011959 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (474)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (474)
++.. ..++++|++.+++||+... .+...|..+..++.....+ ..|+++|++.++ +++++|+
T Consensus 108 ~~~~--~~~gd~vl~~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~-------------~~d~~~l~~~l~---~~~~~v~ 168 (386)
T 1u08_A 108 ITAL--VRNGDEVICFDPSYDSYAP-AIALSGGIVKRMALQPPHF-------------RVDWQEFAALLS---ERTRLVI 168 (386)
T ss_dssp HHHH--CCTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECCTTTC-------------CCCHHHHHHHCC---TTEEEEE
T ss_pred HHHh--CCCCCEEEEeCCCchhHHH-HHHHcCCEEEEeecCcccC-------------cCCHHHHHHhhc---ccCEEEE
Confidence 9953 3446789999999998554 3333444322211110000 028999999885 3678888
Q ss_pred EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc----ccc-ccCCCCceeehhhhcC-CCcceEE
Q 011959 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG----AQE-YFGVTPDLTTLGKIIG-GGLPVGA 324 (474)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~----~~~-~~g~~pdi~t~sK~l~-~G~~iG~ 324 (474)
+++++|++|.+.+ .+++++|.++|++||++||+||+|++| +.|... ... ..+....+.++||.++ +|+|+||
T Consensus 169 l~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 247 (386)
T 1u08_A 169 LNTPHNPSATVWQ-QADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGY 247 (386)
T ss_dssp EESSCTTTCCCCC-HHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEE
T ss_pred EeCCCCCCCccCC-HHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEE
Confidence 8888888898775 556999999999999999999999988 554311 111 2344455668999999 7999999
Q ss_pred EEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeece
Q 011959 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 402 (474)
Q Consensus 325 ~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~ 402 (474)
+++++++++.+. ......+++.++++++++.++|+..++ ++..++++++.+++.+.|+ +.++....+..|.
T Consensus 248 ~~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~----~~g~~~~~~~~g~ 320 (386)
T 1u08_A 248 CVAPAPISAEIR---KVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALN----ESRLEILPCEGTY 320 (386)
T ss_dssp EECCHHHHHHHH---HHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTT----SSSCEECCCCBSS
T ss_pred EEcCHHHHHHHH---HHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH----HCCCeecCCCceE
Confidence 999999998886 233445788899999999999986421 3444555555555555544 3344332233466
Q ss_pred eEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC--------CcceEEecCCcHHHHHHHHHHHHH
Q 011959 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~--------~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
++++.+.... . ....++.+.|+ ++||++.++. ...+|+++..++++|++++++|++
T Consensus 321 ~~~~~~~~~~--~---------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 321 FLLVDYSAVS--T---------LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385 (386)
T ss_dssp EEEEECTTTC--C---------SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred EEEEecCCCC--C---------CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence 7777764210 0 01246777776 6899998752 245788888899999999999864
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-32 Score=269.48 Aligned_cols=335 Identities=15% Similarity=0.082 Sum_probs=215.5
Q ss_pred EEEEcCCCEEEeccCChhhccCC--CCCHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCCeEEE-
Q 011959 92 HMWDIDGNEYIDYVGSWGPAIIG--HADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIEMVRF- 160 (474)
Q Consensus 92 ~~~d~dG~~~iD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~---~~~~v~~- 160 (474)
.+.+..|+++|||.+|.+.++.+ +.+|.+.+++.+++++...++| ..++++++++++..... ..++|++
T Consensus 19 ~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~ 98 (396)
T 2q7w_A 19 LFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTA 98 (396)
T ss_dssp ---------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred HHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEE
Confidence 33444577899999997655666 4679999999998875322222 23555666666543321 2678988
Q ss_pred -eCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC---C----C
Q 011959 161 -VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---N----D 232 (474)
Q Consensus 161 -~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~---~----d 232 (474)
++||++|++.++++++.+.++++|++.+++||++...+.. .|.. +..+|. + |
T Consensus 99 ~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~-~g~~-------------------~~~~~~~~~~~~~~d 158 (396)
T 2q7w_A 99 QTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNS-AGLE-------------------VREYAYYDAENHTLD 158 (396)
T ss_dssp EESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHH-TTCE-------------------EEEEECEETTTTEEC
T ss_pred ecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHH-cCCc-------------------eEEEecccCCCCCcC
Confidence 9999999999998765556778999999999996544433 3332 222222 1 7
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC--CCccccccCCC-Cc
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYFGVT-PD 308 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g--~~~~~~~~g~~-pd 308 (474)
+++|++.+++++.+++++++..++|++|.+.+ .+++++|+++|++||++||+||+|++| +.+ .......+... ++
T Consensus 159 ~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (396)
T 2q7w_A 159 FDALINSLNEAQAGDVVLFHGCCHNPTGIDPT-LEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKE 237 (396)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSC
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCc
Confidence 99999999765334677777777788887665 555999999999999999999999988 543 22222222211 22
Q ss_pred ---eeehhhhcC-CCcceEEEEe---cHH----HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHh------cC--CCH
Q 011959 309 ---LTTLGKIIG-GGLPVGAYGG---RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGT 369 (474)
Q Consensus 309 ---i~t~sK~l~-~G~~iG~~~~---~~~----i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~ 369 (474)
+.++||+++ +|+|+||+++ +++ +++.+. ......+.+.|+++++++.++|+.. .+ ++.
T Consensus 238 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~ 314 (396)
T 2q7w_A 238 LIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMK---AAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDM 314 (396)
T ss_dssp EEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHH---HHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC
T ss_pred EEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHH---HHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 348999999 7999999986 563 444443 1112222344899999988888643 11 334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcce
Q 011959 370 YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 449 (474)
.++++++.+++.+.|++.....++....+..|.++++.+. ...+.+.+.++||++.++ +
T Consensus 315 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gv~v~~~----~ 373 (396)
T 2q7w_A 315 RQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT-----------------KEQVLRLREEFGVYAVAS----G 373 (396)
T ss_dssp -CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECCTT----C
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCC-----------------HHHHHHHHHhcCeeecCC----c
Confidence 5556666777777776643110122112233455444321 034556667889999874 5
Q ss_pred EEecCC-cHHHHHHHHHHHHHHH
Q 011959 450 FTSLAH-SSDDIQHTITAAEKVL 471 (474)
Q Consensus 450 ~~~~~~-t~e~i~~~l~~l~~~~ 471 (474)
|+++.. |++++++++++|++++
T Consensus 374 Ris~~~~~~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 374 RVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred eEEEeecCHHHHHHHHHHHHhcC
Confidence 777654 9999999999998763
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=259.80 Aligned_cols=351 Identities=13% Similarity=0.048 Sum_probs=233.7
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCCC---CCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGA---PCLLENVLAEMVISAVP---SI-EMVRFVNSGTEACM 169 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~~---~~~~~~~la~~l~~~~~---~~-~~v~~~~sGseA~~ 169 (474)
..+|||..|. ..++ .+|.|++++.+++.+. ..|+. ..+++.++++++.+.++ .. ++|++++||++|++
T Consensus 23 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~ 99 (410)
T 3e2y_A 23 PSVVNLGQGF--PDIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410)
T ss_dssp TTSEECSSCC--CCSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CCeEEecCCC--CCCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 4568888774 2233 6899999999998753 22332 34778888888876553 34 79999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCC--CCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~--~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
.+++.. ..+++.|++.+++|+++... +...|..+..++... ..+.. ....... -|+++|++.++ +++
T Consensus 100 ~~~~~~--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~~g~~--~~~~~~~---~d~~~l~~~~~---~~~ 168 (410)
T 3e2y_A 100 NSIQGL--VDPGDEVIIMVPFYDCYEPM-VRMAGAVPVFIPLRSKPTDGMK--WTSSDWT---FDPRELESKFS---SKT 168 (410)
T ss_dssp HHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECEECCCCSSC--CBGGGEE---CCHHHHHTTCC---TTE
T ss_pred HHHHHh--cCCCCEEEEeCCCchhhHHH-HHHcCCEEEEEecccccccccc--ccccCCc---CCHHHHHhhcC---CCc
Confidence 999953 34567899999999886543 333444322211110 00000 0000111 17899988875 368
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccccC----CCCceeehhhhcC-CCc
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG----VTPDLTTLGKIIG-GGL 320 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g----~~pdi~t~sK~l~-~G~ 320 (474)
++|++++++|++|.+.+..+ +++|+++|++||++||+||+|++| +.+.. .....+. ...++.++||.++ +|+
T Consensus 169 ~~v~~~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~ 247 (410)
T 3e2y_A 169 KAIILNTPHNPLGKVYTRQE-LQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGW 247 (410)
T ss_dssp EEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGG
T ss_pred eEEEEeCCCCCCCcCcCHHH-HHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCc
Confidence 88899888888998875444 999999999999999999999988 66532 2222222 2233458999999 899
Q ss_pred ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee
Q 011959 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (474)
|+||+++++++++.+. ......+++.++++++++.++|+. ....+..+++.+..+..++.|.+.+.++++..
T Consensus 248 r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 324 (410)
T 3e2y_A 248 KLGWSIGPAHLIKHLQ---TVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKP 324 (410)
T ss_dssp CCEEEECCHHHHHHHH---HHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred eEEEEEECHHHHHHHH---HHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 9999999999998886 344556888999999999999974 11244455555555555555555444456555
Q ss_pred EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC-----------CcceEEecCCcHHHHHHH
Q 011959 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDDIQHT 463 (474)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-----------~~~~~~~~~~t~e~i~~~ 463 (474)
..+..|.++++.+..... .+.. ...+.....++.+.++ ++||++.++. ...+|+++.+++++|+++
T Consensus 325 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~ 402 (410)
T 3e2y_A 325 IVPDGGYFIIADVSSLGA-DLSD-MNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAA 402 (410)
T ss_dssp EBCSBSSEEEEECGGGCC-CCTT-CCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHH
T ss_pred cCCCccEEEEEEchhhhc-cccc-ccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHH
Confidence 556677788877753210 0000 0000111235566554 6799998753 145789999999999999
Q ss_pred HHHHHH
Q 011959 464 ITAAEK 469 (474)
Q Consensus 464 l~~l~~ 469 (474)
+++|++
T Consensus 403 l~~l~~ 408 (410)
T 3e2y_A 403 EEIFRA 408 (410)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999975
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=260.64 Aligned_cols=334 Identities=16% Similarity=0.118 Sum_probs=231.8
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHHH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGVL 172 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~---~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~~~al 172 (474)
+|||..+. ..++ .+|.+.+++.+++++. ..|+. ..+++.++++++.+.++ ..+ +|++++||++|++.++
T Consensus 27 ~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~ 103 (411)
T 2o0r_A 27 AVNLGQGF--PDED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAV 103 (411)
T ss_dssp CEESSCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHH
T ss_pred eeeccCcC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHH
Confidence 68888875 3455 6899999999999763 33332 34677888888876653 356 9999999999999999
Q ss_pred HHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE
Q 011959 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
+.. ..++++|++.+++||+.... +...|..+..++.... ..... .|+++|++.++. ++++|++
T Consensus 104 ~~~--~~~gd~Vl~~~~~y~~~~~~-~~~~g~~~~~v~~~~~--------~~~~~---~d~~~l~~~l~~---~~~~v~l 166 (411)
T 2o0r_A 104 LGL--VEPGSEVLLIEPFYDSYSPV-VAMAGAHRVTVPLVPD--------GRGFA---LDADALRRAVTP---RTRALII 166 (411)
T ss_dssp HHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECEEE--------TTEEE---CCHHHHHHHCCT---TEEEEEE
T ss_pred HHh--cCCCCEEEEeCCCcHhHHHH-HHHcCCEEEEeecccc--------ccCCC---CCHHHHHHhhcc---CceEEEE
Confidence 953 34467899999999996443 3344432221111000 00011 289999998863 6788888
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccc----cCCCCceeehhhhcC-CCcceEEE
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY----FGVTPDLTTLGKIIG-GGLPVGAY 325 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~----~g~~pdi~t~sK~l~-~G~~iG~~ 325 (474)
++++|++|.+.+ .+++++|+++|++||++||+||+|+++ +.|.. ..... .+....+.++||.++ +|+|+||+
T Consensus 167 ~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 245 (411)
T 2o0r_A 167 NSPHNPTGAVLS-ATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWA 245 (411)
T ss_dssp ESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEE
T ss_pred eCCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEE
Confidence 888888998765 556999999999999999999999988 55432 12211 223334558999998 89999999
Q ss_pred EecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeecee
Q 011959 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403 (474)
Q Consensus 326 ~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~ 403 (474)
++++++++.+. ......+++.++++++++.++|+..++ ++..++++++.+++.+.|++. ++....+..|.+
T Consensus 246 ~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~ 318 (411)
T 2o0r_A 246 CGPAELIAGVR---AAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI----GFAVHDSYGTYF 318 (411)
T ss_dssp ECCHHHHHHHH---HHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH----TCEECCCCBSSE
T ss_pred eeCHHHHHHHH---HHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCEecCCCeeEE
Confidence 99999988876 233445677888999999999975422 345566666677777777654 333222334667
Q ss_pred EEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC-----------------CcceEEecCCcHHHHHHHHH
Q 011959 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------------FEAGFTSLAHSSDDIQHTIT 465 (474)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-----------------~~~~~~~~~~t~e~i~~~l~ 465 (474)
+++.+.... . ....++.+.|+ ++||++.++. ...+|+++..++++++++++
T Consensus 319 ~~~~~~~~~--~---------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~ 387 (411)
T 2o0r_A 319 LCADPRPLG--Y---------DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIR 387 (411)
T ss_dssp EEEECGGGT--C---------CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHH
T ss_pred EEEecCCCC--C---------CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHH
Confidence 777774210 0 01246777776 6799997641 24578988889999999999
Q ss_pred HHHHHHhh
Q 011959 466 AAEKVLRQ 473 (474)
Q Consensus 466 ~l~~~~~~ 473 (474)
+|++++++
T Consensus 388 ~l~~~~~~ 395 (411)
T 2o0r_A 388 RLSVLAER 395 (411)
T ss_dssp HHGGGGC-
T ss_pred HHHHHHhc
Confidence 99887653
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=255.08 Aligned_cols=321 Identities=12% Similarity=0.057 Sum_probs=221.4
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar 176 (474)
++++|||.+|. ++++ .+|+|++++.++++... +++.....++.++++++++ ..+++++++||++|++.+++..
T Consensus 31 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~--~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~- 104 (363)
T 3ffh_A 31 LTKITKLSSNE--NPLG-TSKKVAAIQANSSVETE--IYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL- 104 (363)
T ss_dssp CSCCEECSSCS--CTTC-CCHHHHHHHHTCBSCCC--BC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-
T ss_pred CCceEEccCCC--CCCC-CCHHHHHHHHHHHHHhh--cCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH-
Confidence 35789999884 4555 78999999998765432 3355555777788877775 4689999999999999999952
Q ss_pred hhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
..++++|++.+++|+++...+ ...|..+..++...... -|++++++.++. ++++|+++.++
T Consensus 105 -~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~--------------~d~~~l~~~i~~---~~~~v~~~~p~ 165 (363)
T 3ffh_A 105 -LDTTTNTVMATPTFVQYRQNA-LIEGAEVREIPLLQDGE--------------HDLEGMLNAIDE---KTTIVWICNPN 165 (363)
T ss_dssp -CSTTCEEEEEESSCHHHHHHH-HHHTCEEEEEECCTTSC--------------CCHHHHHHHCCT---TEEEEEEESSC
T ss_pred -ccCCCEEEEcCCChHHHHHHH-HHcCCEEEEecCCCCCC--------------cCHHHHHHhccc---CCCEEEEeCCC
Confidence 345688999999998854433 33343222211111001 189999998863 68888888888
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccc-cccCCCCc---eeehhhhcC-CCcceEEEEecHH
Q 011959 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-EYFGVTPD---LTTLGKIIG-GGLPVGAYGGRRD 330 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~-~~~g~~pd---i~t~sK~l~-~G~~iG~~~~~~~ 330 (474)
|++|.+.+.++ +.+|+++|++ |++||+||+|++| + +..... ...+..++ +.++||.++ +|+|+||++++++
T Consensus 166 nptG~~~~~~~-l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 242 (363)
T 3ffh_A 166 NPTGNYIELAD-IQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKE 242 (363)
T ss_dssp TTTCCCCCHHH-HHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHH
T ss_pred CCcCCCcCHHH-HHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHH
Confidence 88999888333 5555555554 9999999999988 6 543222 22222222 448999999 8999999999999
Q ss_pred HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEe
Q 011959 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (474)
Q Consensus 331 i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (474)
+++.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|++. .+ ....++.|.++++.+.
T Consensus 243 ~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g-~~~~~~~~~~~~~~~~ 313 (363)
T 3ffh_A 243 IIRQLNIV-----RPPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRF---EK-VKLYPANGNFVLIDLG 313 (363)
T ss_dssp HHHHHHHT-----CCSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC---TT-CEECCCCSSEEEEECS
T ss_pred HHHHHHHh-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhC---CC-ceECCCCCeEEEEECC
Confidence 99988742 13678899999999999973211 233444445555555555441 23 2234667888877763
Q ss_pred cCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
. ...++.+.|.++||++.++. ...+|+++. +++++++++++|++++
T Consensus 314 ~---------------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 314 I---------------EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG-KEEDNSAVIALLEKLL 363 (363)
T ss_dssp S---------------CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred C---------------CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC-CHHHHHHHHHHHHHhC
Confidence 2 12578889999999998864 346788866 9999999999998763
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=263.75 Aligned_cols=346 Identities=10% Similarity=0.010 Sum_probs=240.2
Q ss_pred eeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCCC---CCHHHHHHHHHHHhhCC---CCCeE
Q 011959 87 SVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGA---PCLLENVLAEMVISAVP---SIEMV 158 (474)
Q Consensus 87 ~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~~---~~~~~~~la~~l~~~~~---~~~~v 158 (474)
......++|.+|+++|||.+|. ++++ .+|+|++++.+++.+. ..|+. ..+++.++++++.+.++ ..+++
T Consensus 32 ~~~~~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i 108 (437)
T 3g0t_A 32 VALVTNLEKATGTKFCRMEMGV--PGLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARAC 108 (437)
T ss_dssp HHHHHHHHHHHTCCCEECCCCS--CCSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HHHHHHHHHhcCCCEEeccCcC--CCCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccE
Confidence 3444556777899999999986 3444 7899999999999853 23332 24677788888876543 46799
Q ss_pred EEeCCHHHHHHHHHHHhHhhcCCc--EEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHH
Q 011959 159 RFVNSGTEACMGVLRLARAFTGRE--RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 236 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~--~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l 236 (474)
++++||++|++.+++....+..++ +|++.+++|+++...+. ..|..+..++.. ..+. .-|+++|
T Consensus 109 ~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~-~~g~~~~~v~~~-~~~~------------~~d~~~l 174 (437)
T 3g0t_A 109 VPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCR-ILGQKFESFDLF-EYRG------------EKLREKL 174 (437)
T ss_dssp EEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHH-HHTCCCEEEEGG-GGCT------------THHHHHH
T ss_pred EEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHH-HcCCEEEEEeec-CCCC------------ccCHHHH
Confidence 999999999999999532114556 89999999998655443 334322211110 0000 0178999
Q ss_pred HHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-------ccc---cCC
Q 011959 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-------QEY---FGV 305 (474)
Q Consensus 237 e~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-------~~~---~g~ 305 (474)
++.++.. ++++|+++.++|++|.+.+.++ +++|.++|++||++||+||+|++| ..+.... ... .+.
T Consensus 175 ~~~l~~~--~~~~v~l~~p~nptG~~~~~~~-l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (437)
T 3g0t_A 175 ESYLQTG--QFCSIIYSNPNNPTWQCMTDEE-LRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDN 251 (437)
T ss_dssp HHHHTTT--CCCEEEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSC
T ss_pred HHHHhcC--CceEEEEeCCCCCCCCcCCHHH-HHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCc
Confidence 9999432 4666666555788898876555 999999999999999999999887 4432111 111 222
Q ss_pred CCceeehhhhcC-CCcceEEEEecHHHHH-h-----------------hcCCCCcccccCCCCChHHHHHHHHHHHHhcC
Q 011959 306 TPDLTTLGKIIG-GGLPVGAYGGRRDIME-M-----------------VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366 (474)
Q Consensus 306 ~pdi~t~sK~l~-~G~~iG~~~~~~~i~~-~-----------------~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 366 (474)
...+.++||.++ +|+|+||+++++++++ . +. ......+++.|+++++++.++|+....
T Consensus 252 ~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~ 328 (437)
T 3g0t_A 252 YILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSS---SALYALSSGATHSAQWGMAAMLKACND 328 (437)
T ss_dssp EEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHT---THHHHHHSSSCHHHHHHHHHHHHHHHT
T ss_pred EEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHH---HHHhhhcCCCCHHHHHHHHHHHhCcHh
Confidence 223458999999 8999999999999998 7 65 333445678899999999999987642
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE------Ee-eeceeEEEEEecCCCcCcccccccchHHHHHHHHHH
Q 011959 367 -----PGTYEYLNKITGELTQGIIDAGKKAGHAIC------GG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (474)
Q Consensus 367 -----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (474)
+...++++++.+++.+.|+++ ++... .+ ..|.++++.+... ....+.+.|
T Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~L 390 (437)
T 3g0t_A 329 GEYNFRDSVIEYGRKARIMKKMFLDN----GFNIVYDKDGNEPLADGFYFTVGYKGM--------------DSSKLIEKF 390 (437)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHTT----TEEESSCEETTEECCSSSEEEEEETTC--------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc----CCEEeccccCCCCCceeEEEEEecCCC--------------CHHHHHHHH
Confidence 344555566666666666543 33222 24 5677777777411 125788999
Q ss_pred HHCCeEecccCC------cceEEecCC-cHHHHHHHHHHHHHHHhh
Q 011959 435 LEEGVYFAPSQF------EAGFTSLAH-SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 435 ~~~Gv~v~~~~~------~~~~~~~~~-t~e~i~~~l~~l~~~~~~ 473 (474)
.++||++.++.. ..+|+++.. +++++++++++|++++++
T Consensus 391 ~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 391 VRYGMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp HHTTEECEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred HHcCeEEeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 999999988742 457887655 999999999999998764
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=259.06 Aligned_cols=308 Identities=14% Similarity=0.103 Sum_probs=215.9
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHH
Q 011959 122 AALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199 (474)
Q Consensus 122 ~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~ 199 (474)
+++.+++..+....++.....+|.+.+++++. +.+++++++||++|++.+++.. ..++++|++.+++|++.... .
T Consensus 46 ~~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l--~~~gd~Vl~~~~~~~~~~~~-~ 122 (375)
T 3op7_A 46 EDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSL--IEPGDHVISLYPTYQQLYDI-P 122 (375)
T ss_dssp HHHHHHHHTSCCSSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEEESSCTHHHHH-H
T ss_pred HHHHHHHhcCCcCCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHh--cCCCCEEEEeCCCchhHHHH-H
Confidence 45555555543222233334677777877762 5689999999999999999952 34567899999999885543 3
Q ss_pred HhcCCCCccCCCCCCCCCCCCCCCceEEccCC-------CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHH
Q 011959 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFN-------DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (474)
Q Consensus 200 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (474)
...|..+ +.++.+ |+++|++.++. ++++|++++++|++|.+.+ .+++++|
T Consensus 123 ~~~g~~~-------------------~~v~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~nptG~~~~-~~~l~~i 179 (375)
T 3op7_A 123 KSLGAEV-------------------DLWQIEEENGWLPDLEKLRQLIRP---TTKMICINNANNPTGAVMD-RTYLEEL 179 (375)
T ss_dssp HHTTCEE-------------------EEEEEEGGGTTEECHHHHHHHCCT---TCCEEEEESSCTTTCCCCC-HHHHHHH
T ss_pred HHcCCEE-------------------EEEeccccCCCCCCHHHHHHhhcc---CCeEEEEcCCCCCCCCCCC-HHHHHHH
Confidence 3333322 222211 89999998863 6788889988888998775 4559999
Q ss_pred HHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcC-CCcceEEEEecHHHHHhhcCCCCcccccCCCCC
Q 011959 273 RRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350 (474)
Q Consensus 273 ~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~ 350 (474)
.++|++||++||+||+|+++ +.+.....+.++..+++.+|||+++ +|+|+||+++++++++.+.. .....+++.+
T Consensus 180 ~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~---~~~~~~~~~~ 256 (375)
T 3op7_A 180 VEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRD---YRDYTMICAG 256 (375)
T ss_dssp HHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTT---TGGGTTSCCC
T ss_pred HHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHH---HHhhhccCCC
Confidence 99999999999999999988 5433333455666677789999999 79999999999999999873 4455678889
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeee-ceeEEEEEecCCCcCcccccccchHHHHH
Q 011959 351 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFAR 429 (474)
Q Consensus 351 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 429 (474)
++.++++.++|+..+ +..++.++..+..++.|.+.+.+++....+.+. |.+.++.+.... ...+
T Consensus 257 ~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 321 (375)
T 3op7_A 257 VFDDLVAQLALAHYQ--EILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM-------------PMED 321 (375)
T ss_dssp HHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS-------------CHHH
T ss_pred cHHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC-------------CHHH
Confidence 999999998887542 233444333333344444433334433333343 445555553210 1245
Q ss_pred HHHHH-HHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 430 FYRGM-LEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 430 ~~~~l-~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+.+.+ .++||++.++. ...+|+++..+++++++++++|++++++
T Consensus 322 ~~~~ll~~~gi~v~~g~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 322 FCLQLLQEHGVLLVPGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRR 370 (375)
T ss_dssp HHHHHHHHHCEECEEGGGGTCTTEEEECCCSCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhCCEEEeChhhhCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 66776 47899998864 3568899988899999999999999875
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=256.64 Aligned_cols=321 Identities=15% Similarity=0.087 Sum_probs=221.8
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVL 172 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al 172 (474)
.+|+.+|||.++. ++++ .+|+|++++.++++++ ..++++.....+|.++++++++ ..+++++++||++|++.++
T Consensus 23 ~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~ 99 (360)
T 3hdo_A 23 PDIASWIKLNTNE--NPYP-PSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI 99 (360)
T ss_dssp SCCTTSEECSSCC--CSSC-CCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred ccccceeeccCCC--CCCC-CCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence 4678999999884 3343 7899999999998773 1123333333567777777665 4689999999999999999
Q ss_pred HHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE
Q 011959 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
+.. ...+++|++.+++|++....+ ...|..+. .++.++-..++++++.. +++++++
T Consensus 100 ~~l--~~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~-------------------~v~~~~~~~~~~l~~~~--~~~~v~i 155 (360)
T 3hdo_A 100 RAF--AAEGEEIGYVHPSYSYYGTLA-EVQGARVR-------------------TFGLTGDFRIAGFPERY--EGKVFFL 155 (360)
T ss_dssp HHH--CCTTCEEEEESSSCTHHHHHH-HHHTCEEE-------------------EECBCTTSSBTTCCSSB--CSSEEEE
T ss_pred HHH--hCCCCEEEEcCCChHHHHHHH-HHCCCEEE-------------------EeeCCCCCCHHHHHhhc--CCCEEEE
Confidence 942 334578999999998865433 33343222 22221100112222222 2346777
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcC-CCcceEEEEecHH
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRD 330 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~ 330 (474)
+.++|++|.+.+ +++|.++|+++|++||+||+|++| ..+.....+..+....+.++||.++ +|+|+||++++++
T Consensus 156 ~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 231 (360)
T 3hdo_A 156 TTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPE 231 (360)
T ss_dssp ESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHH
T ss_pred eCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHH
Confidence 777888999999 888999999999999999999987 3322222223333344558999998 7999999999999
Q ss_pred HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEe
Q 011959 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (474)
Q Consensus 331 i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (474)
+++.+.. ...+++.|+++++++.++|+..+. ++..++++++.+++.+.|++. ++. ..++.|.++++.+.
T Consensus 232 ~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~-~~~~~~~~~~~~~~ 301 (360)
T 3hdo_A 232 VIAALDK-----IRDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI----GYD-VIPSQGNYLFATPP 301 (360)
T ss_dssp HHHHHHH-----HSCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----TCE-ECCCSSSEEEEECT
T ss_pred HHHHHHH-----hCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----CCE-EcCCCccEEEEECC
Confidence 9988863 123578899999999999984221 344555555666666666543 332 34667888777653
Q ss_pred cCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC----cceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
.. ...++.+.|.++||++.++.. ..+|+++. +++++++++++|+++.+
T Consensus 302 ~~--------------~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~-~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 302 DR--------------DGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG-TREEMEQTLAALKEIGE 353 (360)
T ss_dssp TC--------------CHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred CC--------------CHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 21 125778889999999988642 56788876 99999999999998764
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=259.01 Aligned_cols=330 Identities=15% Similarity=0.087 Sum_probs=228.8
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~ 168 (474)
.+|+++|||.++. ..++ .+|.+.+++ ++++++. .|+. ..+++.++++++.+.++ +.+++++++||++|+
T Consensus 40 ~~g~~~i~l~~~~--~~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 40 KRGVRIHHLNIGQ--PDLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp HTTCEEEECSSCC--CCSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEeccCCC--CCCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 3588999998885 2445 578999999 8886532 2322 35678888888877553 457999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC-HHHHHHHHhcCCCCe
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENNKGEI 247 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d-~~~le~~l~~~~~~~ 247 (474)
+.+++.. ..++++|++.+++||++... +...|..+..++.....++ + +++|++.+++ ++
T Consensus 116 ~~~~~~~--~~~gd~Vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~--------------~~~~~l~~~l~~---~~ 175 (409)
T 2gb3_A 116 LFSFAVI--ANPGDEILVLEPFYANYNAF-AKIAGVKLIPVTRRMEEGF--------------AIPQNLESFINE---RT 175 (409)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTHHHHH-HHHHTCEEEEEECCGGGTS--------------CCCTTGGGGCCT---TE
T ss_pred HHHHHHh--CCCCCEEEEcCCCchhHHHH-HHHcCCEEEEeccCCCCCC--------------ccHHHHHHhhCc---CC
Confidence 9999953 34567899999999986543 3334432221111000010 1 4566666652 67
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCC-CCcee--ehhhhcC-CCcce
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIG-GGLPV 322 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~--t~sK~l~-~G~~i 322 (474)
++|++++++|++|.+.+ .+++++|+++|++||++||+||+|+++ +.+..... ..++ ..|++ ++||.++ +|+|+
T Consensus 176 ~~v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~ 253 (409)
T 2gb3_A 176 KGIVLSNPCNPTGVVYG-KDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACGARV 253 (409)
T ss_dssp EEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGGGCC
T ss_pred eEEEECCCCCCCCCCcC-HHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCccceE
Confidence 88888888888898765 456999999999999999999999988 55533222 1223 23554 7999998 79999
Q ss_pred EEEEecH-HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCee-EEe
Q 011959 323 GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGG 398 (474)
Q Consensus 323 G~~~~~~-~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~ 398 (474)
||+++++ ++++.+.. .....+ +.|+++++++.++|+...+ +.+.++++++.+++.+.|++. ++.. ..+
T Consensus 254 G~~~~~~~~l~~~l~~---~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 325 (409)
T 2gb3_A 254 GCLITRNEELISHAMK---LAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH----GLKRFTKP 325 (409)
T ss_dssp EEEECSCHHHHHHHHH---HHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCBCCC
T ss_pred EEEEECcHHHHHHHHH---HHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc----CceeeeCC
Confidence 9999998 89888762 223344 7899999999888854211 344556666677777777654 3222 223
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC------CeEecccC---------CcceEEecCCcHHHHHHH
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE------GVYFAPSQ---------FEAGFTSLAHSSDDIQHT 463 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------Gv~v~~~~---------~~~~~~~~~~t~e~i~~~ 463 (474)
..|.++++.+... ...++.+.|+++ ||++.++. ...+|+++.+++++++++
T Consensus 326 ~~~~~~~~~~~~~--------------~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~ 391 (409)
T 2gb3_A 326 SGAFYITAELPVE--------------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRA 391 (409)
T ss_dssp SBSSEEEEECSSS--------------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHH
T ss_pred CeeEEEEEEeCCC--------------CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHH
Confidence 3466666665310 125688888887 99998752 346788888999999999
Q ss_pred HHHHHHHHhh
Q 011959 464 ITAAEKVLRQ 473 (474)
Q Consensus 464 l~~l~~~~~~ 473 (474)
+++|++++++
T Consensus 392 ~~~l~~~l~~ 401 (409)
T 2gb3_A 392 IDVLMEGLKM 401 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=248.95 Aligned_cols=319 Identities=15% Similarity=0.129 Sum_probs=227.2
Q ss_pred EeccCChhhccCCCCCHHHHHHHHHHHHhc----CCCCCC--CHHHHHHHHHHHhh--CC-CCCeEEEeCCHHHHHHHHH
Q 011959 102 IDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGAP--CLLENVLAEMVISA--VP-SIEMVRFVNSGTEACMGVL 172 (474)
Q Consensus 102 iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~~--~~~~~~la~~l~~~--~~-~~~~v~~~~sGseA~~~al 172 (474)
|||.+|. ++++ .+|++.+++.+++++. ..|+.. .+++.++++++.+. ++ ..++|++++|++++++.++
T Consensus 33 idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~ 109 (369)
T 3cq5_A 33 IRLNTNE--NPYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL 109 (369)
T ss_dssp EECSSCC--CCSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred eeccCCC--CCCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence 8998885 3566 7899999999998762 223211 24455555555443 33 4678999999999999999
Q ss_pred HHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE
Q 011959 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
+.. ..++++|++.+++||++...+ ...|..+..++.. ... ..|+++|++.++++ ++++|++
T Consensus 110 ~~l--~~~gd~Vl~~~~~y~~~~~~~-~~~g~~~~~v~~~--~~~------------~~d~~~l~~~i~~~--~~~~v~~ 170 (369)
T 3cq5_A 110 QAF--GGPGRTALGFQPSYSMHPILA-KGTHTEFIAVSRG--ADF------------RIDMDVALEEIRAK--QPDIVFV 170 (369)
T ss_dssp HHH--CSTTCEEEEEESSCTHHHHHH-HHTTCEEEEEECC--TTS------------SCCHHHHHHHHHHH--CCSEEEE
T ss_pred HHh--cCCCCEEEEcCCChHHHHHHH-HHcCCEEEEecCC--cCC------------CCCHHHHHHHhhcc--CCCEEEE
Confidence 853 234678999999999865533 3334332221111 100 11799999998742 4678888
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-ccccC-CCCceeehhhhcC-CCcceEEEEec
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFG-VTPDLTTLGKIIG-GGLPVGAYGGR 328 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~g-~~pdi~t~sK~l~-~G~~iG~~~~~ 328 (474)
++++|++|.+.+ ++++.++|+.++++||+||+|++| +...... .+.++ ..+++.++||+++ +|+|+||++++
T Consensus 171 ~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 246 (369)
T 3cq5_A 171 TTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 246 (369)
T ss_dssp ESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC
T ss_pred eCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC
Confidence 888889999998 778888999999999999999988 4322121 12233 3345668999998 79999999999
Q ss_pred HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEE
Q 011959 329 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (474)
Q Consensus 329 ~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (474)
+++++.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|++. ++. ..++.|.++++.
T Consensus 247 ~~~~~~l~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~~~~~~ 316 (369)
T 3cq5_A 247 PAFIDAVMLV-----RLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL----GYA-VVPSESNFVFFG 316 (369)
T ss_dssp THHHHHHHTT-----SCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH----TCE-EECCSSSEEEEE
T ss_pred HHHHHHHHHc-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC----CCE-ECCCCCeEEEEE
Confidence 9999888742 22567899999999999975322 456677777777777777763 332 235677888776
Q ss_pred EecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
+.. + ..++.+.|.++||++.+++ ...+|+++. +++++++++++|+++++
T Consensus 317 ~~~------------~---~~~l~~~l~~~gi~v~~~~~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 317 DFS------------D---QHAAWQAFLDRGVLIRDVGIAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp CCS------------S---HHHHHHHHHHTTEECBCCSCTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred CCC------------C---HHHHHHHHHHCCEEEEECCCCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 631 0 2567888899999999874 346788876 89999999999999875
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=250.21 Aligned_cols=324 Identities=15% Similarity=0.098 Sum_probs=215.8
Q ss_pred EeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCH
Q 011959 86 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSG 164 (474)
Q Consensus 86 ~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sG 164 (474)
.+++|.+++|.+|+++|||.++. ++++ .+|++++++.+++.....| +.....+|.++++++++ ..+++++++||
T Consensus 2 ~~~~g~~~~~~~g~~~id~~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~lr~~la~~~~~~~~~i~~t~g~ 76 (350)
T 3fkd_A 2 IFGHGDEGITPLSSEIVNFSTTV--WTDG-DKDHLEKHLVENLNCIRHY--PEPDAGTLRQMLAKRNSVDNNAILVTNGP 76 (350)
T ss_dssp --------------CCEECSCCS--CCCS-CCHHHHHHHHHTGGGGGSC--CCTTCHHHHHHHHHHTTCCGGGEEEESHH
T ss_pred cccccchHhhhccccEEEccCCC--CCCC-CCHHHHHHHHHhHhHHhcC--CCCcHHHHHHHHHHHhCcCHHHEEEcCCH
Confidence 46889999999999999999885 5555 7899999999988543333 32223678888888886 46799999999
Q ss_pred HHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-CCHHHHHHHHhcC
Q 011959 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENN 243 (474)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~~le~~l~~~ 243 (474)
++|++.+++. +. +++|++.+++|++.... +...|. +++.++. ++.+.+.
T Consensus 77 ~~al~~~~~~---l~-gd~Vi~~~p~~~~~~~~-~~~~g~-------------------~~~~v~~~~~~~~~~------ 126 (350)
T 3fkd_A 77 TAAFYQIAQA---FR-GSRSLIAIPSFAEYEDA-CRMYEH-------------------EVCFYPSNEDIGEAD------ 126 (350)
T ss_dssp HHHHHHHHHH---TT-TCEEEEEESCCHHHHHH-HHHTTC-------------------EEEEEETTSCGGGSC------
T ss_pred HHHHHHHHHH---HC-CCEEEEeCCCcHHHHHH-HHHcCC-------------------eEEEEecCCccccCc------
Confidence 9999999995 33 78999999999885533 333333 2333333 2211111
Q ss_pred CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC-CEEEEeccccCc-ccCCCccccccCCC---CceeehhhhcC-
Q 011959 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGF-RLAYGGAQEYFGVT---PDLTTLGKIIG- 317 (474)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g-~llI~DEv~~g~-r~g~~~~~~~~g~~---pdi~t~sK~l~- 317 (474)
.+++++|+++.++|++|.+.+ ++++.++++.++ .+||+||+|.+| ..+.... ...+.. ..+.+|||.++
T Consensus 127 ~~~~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~-~~~~~~~~~i~~~S~sK~~~~ 201 (350)
T 3fkd_A 127 FSNMDFCWLCNPNNPDGRLLQ----RTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRP-ADIKGRKNLVMVYSFSHAYGI 201 (350)
T ss_dssp CTTCSEEEEESSCTTTCCCCC----HHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCG-GGGTTCSSEEEEEESHHHHSC
T ss_pred cCCCCEEEEeCCCCCcCCCCC----HHHHHHHHHhCCCCEEEEECchhhhccCcchhh-HHhhcCCCEEEEecCchhccC
Confidence 035677777777888999998 444555555544 599999999888 5543222 222222 33448999999
Q ss_pred CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE
Q 011959 318 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (474)
Q Consensus 318 ~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (474)
+|+|+||+++++++++.+... ..+++.|+++++++.++|+...+ .+..++..++.+++.+.|+++ +....
T Consensus 202 ~G~r~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~ 272 (350)
T 3fkd_A 202 PGLRIGYIVANKDFMKRVAAF-----STPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRL----DGVEV 272 (350)
T ss_dssp GGGCCEEEECCHHHHHHHHTT-----CCTTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHS----TTEEE
T ss_pred cchheEeEEeCHHHHHHHHHh-----CCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----CCcEE
Confidence 899999999999999988742 23567899999999999986542 222333336677777777653 32333
Q ss_pred EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC------CcceEEecCCcHHHHHHHHHHHHH
Q 011959 397 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 397 v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
.++.|.++++.+... ...++.+.|.+ +||.+.++. ...+|+++. +++++++++++|++
T Consensus 273 ~~~~~~~~~~~~~~~--------------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~ 337 (350)
T 3fkd_A 273 HPSGTTFFLLRLKKG--------------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALET 337 (350)
T ss_dssp CCCSSSEEEEEESSS--------------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCC--------------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHH
Confidence 456778877776431 12578888998 999998763 345788765 88899999999998
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
+.++
T Consensus 338 ~~~~ 341 (350)
T 3fkd_A 338 FLEK 341 (350)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 8754
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-30 Score=256.53 Aligned_cols=339 Identities=14% Similarity=0.061 Sum_probs=232.3
Q ss_pred cCCCEEEeccCChhhc-cCCCCCHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHH
Q 011959 96 IDGNEYIDYVGSWGPA-IIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 167 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA 167 (474)
.+|+++|||..+.... .++ .+|++.+++.+++.+.. .|+. ..+++.++++++.+.++ +.+++++++||++|
T Consensus 35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a 113 (406)
T 1xi9_A 35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 113 (406)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence 4688999999885422 455 57999999999987643 3332 24677888888876542 46799999999999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-CCHHHHHHHHhcCCCC
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGE 246 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~ 246 (474)
++.+++.+ ..++++|++.+++||++...+ ...|..+..++..... .+ -|+++|++.+++ +
T Consensus 114 l~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~-------------~~~~d~~~l~~~l~~---~ 174 (406)
T 1xi9_A 114 LQLIFGAL--LDPGDEILVPGPSYPPYTGLV-KFYGGKPVEYRTIEEE-------------DWQPDIDDIRKKITD---R 174 (406)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCHHHHHHH-HHTTCEEEEEEEEGGG-------------TSEECHHHHHHHCCT---T
T ss_pred HHHHHHHh--CCCCCEEEEcCCCCccHHHHH-HHcCCEEEEeecCCCc-------------CCcCCHHHHHHhhCc---C
Confidence 99999953 345678999999999855433 3333322111100000 01 179999998863 5
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCC-cee--ehhhhcC-CCcc
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP-DLT--TLGKIIG-GGLP 321 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~p-di~--t~sK~l~-~G~~ 321 (474)
+++|++++++|++|.+.+ ++++++|.++|++||++||+||+|++| +.+.......++... +++ ++||.++ +|+|
T Consensus 175 ~~~v~i~~p~nptG~~~~-~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 253 (406)
T 1xi9_A 175 TKAIAVINPNNPTGALYD-KKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWR 253 (406)
T ss_dssp EEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGC
T ss_pred ceEEEEECCCCCCCCCcC-HHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccE
Confidence 788888888888998765 455999999999999999999999988 533333333333111 333 7899998 7999
Q ss_pred eEEEE--ecH----HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011959 322 VGAYG--GRR----DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGH 393 (474)
Q Consensus 322 iG~~~--~~~----~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (474)
+||++ +++ ++++.+.. ..... ++.|+++++++.++|+...+ +++.++++++++++.+.|++ .+.
T Consensus 254 ~G~~~~~~~~~~~~~l~~~l~~---~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~ 325 (406)
T 1xi9_A 254 LGYMYFVDPENKLSEVREAIDR---LARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE----IPG 325 (406)
T ss_dssp CEEEEEECTTCTTHHHHHHHHH---HHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT----STT
T ss_pred EEEEEEecCchhHHHHHHHHHH---HHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh----CCC
Confidence 99998 999 99888762 22222 67889999999999864322 33455556666666666654 321
Q ss_pred eeEEeee-ceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHH
Q 011959 394 AICGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTIT 465 (474)
Q Consensus 394 ~~~v~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~ 465 (474)
...+++. |.++++.+.... .....++.+.|+ ++||++.++. ...+|+++.+++++++++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~~ 394 (406)
T 1xi9_A 326 ISTTKPQGAFYIFPKIEVGP-----------WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMD 394 (406)
T ss_dssp EECCCCCBSSEECCEECSCS-----------CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHH
T ss_pred CeeecCCeeEEEEEecCccC-----------CCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHHH
Confidence 1112333 445555553200 001256788887 8899998763 34688988899999999999
Q ss_pred HHHHHHhhC
Q 011959 466 AAEKVLRQI 474 (474)
Q Consensus 466 ~l~~~~~~~ 474 (474)
+|+++++++
T Consensus 395 ~l~~~l~~~ 403 (406)
T 1xi9_A 395 RFEKFMKER 403 (406)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998753
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=259.52 Aligned_cols=340 Identities=11% Similarity=0.060 Sum_probs=227.0
Q ss_pred EEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-------------CCCC---CCCHHHHHHHHHHHhhCC----
Q 011959 94 WDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-------------TSFG---APCLLENVLAEMVISAVP---- 153 (474)
Q Consensus 94 ~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-------------~~~~---~~~~~~~~la~~l~~~~~---- 153 (474)
||.++|.+.++..|...++++ ++.+.+++.++.... ..|+ +..+++.++++++.+..+
T Consensus 31 y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~ 108 (435)
T 3piu_A 31 YHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT 108 (435)
T ss_dssp CBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred CCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence 778888766666665556555 788888888765421 1122 234677788887765432
Q ss_pred -CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-
Q 011959 154 -SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN- 231 (474)
Q Consensus 154 -~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 231 (474)
..+++++++||++|++.+++.. ...++.|++.+++|++....+....|.. ++.++++
T Consensus 109 ~~~~~v~~~~gg~~a~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g~~-------------------~~~~~~~~ 167 (435)
T 3piu_A 109 FDPNHLVLTAGATSANETFIFCL--ADPGEAVLIPTPYYPGFDRDLKWRTGVE-------------------IVPIHCTS 167 (435)
T ss_dssp CCGGGEEEEEHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHTTTTTCCE-------------------EEEEECCG
T ss_pred CCHHHEEEcCChHHHHHHHHHHh--cCCCCeEEECCCccccHHHHHHHhcCCE-------------------EEEeeCCC
Confidence 3689999999999999999953 2345788888888877543322123332 2333321
Q ss_pred ------CHHHHHHHHhc---CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-c
Q 011959 232 ------DVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-Q 300 (474)
Q Consensus 232 ------d~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~ 300 (474)
|+++|++.+++ ...++++|++++++|++|.+.+.++ +++|+++|++||++||+||+|+++ +.+..+. .
T Consensus 168 ~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~ 246 (435)
T 3piu_A 168 SNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNE-LYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISV 246 (435)
T ss_dssp GGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCH
T ss_pred ccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHH-HHHHHHHHHHcCCEEEEeccccccccCCCCCcCH
Confidence 89999998875 2236788888888888998776555 999999999999999999999987 5554322 1
Q ss_pred cccC----CC-----Cc----eeehhhhcC-CCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc
Q 011959 301 EYFG----VT-----PD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 365 (474)
Q Consensus 301 ~~~g----~~-----pd----i~t~sK~l~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 365 (474)
..++ +. +| +.||||++| +|+|+||+++ ++++++.+.. ...++..++++++++.++|+...
T Consensus 247 ~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~ 321 (435)
T 3piu_A 247 MEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-----MSSFGLVSSQTQHLLSAMLSDKK 321 (435)
T ss_dssp HHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH-----HGGGSCCCHHHHHHHHHHHHCHH
T ss_pred HHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH-----HhhcCCCCHHHHHHHHHHhcChH
Confidence 1111 11 34 458999999 8999999988 5677777652 22345678888888888876322
Q ss_pred C-----CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-Ce
Q 011959 366 E-----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GV 439 (474)
Q Consensus 366 ~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv 439 (474)
. ++..++++++.+++++.|++ .++....+..|+++++.+..... .+......++.+.|+++ ||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~gi 390 (435)
T 3piu_A 322 LTKNYIAENHKRLKQRQKKLVSGLQK----SGISCLNGNAGLFCWVDMRHLLR-------SNTFEAEMELWKKIVYEVHL 390 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----TTCEECCCCSSSEEEEECGGGSS-------SSSHHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcccCCCeeEEEEEEcccccc-------cCCchhHHHHHHHHHHHCCE
Confidence 1 22334444455555555543 34332223345788888753210 01122345778888877 99
Q ss_pred EecccC------CcceEEecCC-cHHHHHHHHHHHHHHHhh
Q 011959 440 YFAPSQ------FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 440 ~v~~~~------~~~~~~~~~~-t~e~i~~~l~~l~~~~~~ 473 (474)
++.++. ...+|+++.. |+++|++++++|++++++
T Consensus 391 ~v~~g~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 391 NISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp ECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCcccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 998753 3457888766 999999999999999865
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=264.39 Aligned_cols=339 Identities=11% Similarity=0.076 Sum_probs=224.6
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc----CCCCC-C----CHHHHHHHHHHHhhCC-CCCeEEEeCCHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGA-P----CLLENVLAEMVISAVP-SIEMVRFVNSGT 165 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~-~----~~~~~~la~~l~~~~~-~~~~v~~~~sGs 165 (474)
.+|+++|||.+|. ..+. .+|.|++++.+++++. ..++| + .++++++++++..-.+ ..+++++++|++
T Consensus 66 ~~~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~ 142 (449)
T 3qgu_A 66 NPDAKIISLGIGD--TTEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK 142 (449)
T ss_dssp CTTCCCEECSSCC--CCCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCEEEeeCCC--CCCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence 4688999999883 2233 6899999999999841 11222 2 2445555555430002 467999999999
Q ss_pred HHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCC
Q 011959 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (474)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (474)
+++..+.. ...+++.|++.+++|+++...+......+... . ....++..+|+++.+.+...+.+. +
T Consensus 143 ~al~~~~~---l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~-~ 208 (449)
T 3qgu_A 143 CDIARIQM---MFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHN------G----TGFDGIEYMVCNPDNHFFPDLSKA-K 208 (449)
T ss_dssp HHHHHHHH---HHCSSSCEEEEESCCTHHHHHHHHHTCSCCBC------S----SSBTTEEEEECCGGGTTCCCGGGC-C
T ss_pred HHHHHHHH---HhCCCCEEEEcCCCChhHHHHHHHcCCccccc------c----cccceeEEEecccccCCcCChhHc-C
Confidence 99998833 34567889999999999765554443321110 0 001124445544221221112221 3
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-Ccccccc----CCCCceeehhhhcC-C
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF----GVTPDLTTLGKIIG-G 318 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~----g~~pdi~t~sK~l~-~ 318 (474)
++++|+++.++|++|.+.+.+ .+++|+++|++||++||+||+|++| +.+. ......+ +....+.+|||++| +
T Consensus 209 ~~~~v~l~~p~NPtG~~~~~~-~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 287 (449)
T 3qgu_A 209 RTDIIFFCSPNNPTGAAATRA-QLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFT 287 (449)
T ss_dssp CCSEEEEESSCTTTCCCCCHH-HHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCT
T ss_pred CCCEEEEeCCCCCCCCcCCHH-HHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCc
Confidence 567777777788888877644 5999999999999999999999988 5542 2222222 22334568999999 8
Q ss_pred CcceEEEEecHHHHHh--------hcCCCCcccccCCCCChHHHHHHHHHHHHhc--C-CCHHHHHHHHHHHHHHHHHHH
Q 011959 319 GLPVGAYGGRRDIMEM--------VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--E-PGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 319 G~~iG~~~~~~~i~~~--------~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--~-~~~~~~~~~~~~~l~~~L~~~ 387 (474)
|+|+||+++++++++. +. ......+++.++++++++.++|+... . +++.++++++.+++++.|+++
T Consensus 288 G~r~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 364 (449)
T 3qgu_A 288 GVRLGWTVVPKALKYANGEPVHADWN---RVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM 364 (449)
T ss_dssp TCCCEEEECCTTCBCTTSCBHHHHHH---HHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceeEEEecCHHHHhhhhhhHHHHHH---HHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999887652 22 12234455789999999998886421 1 456667777777777777664
Q ss_pred hhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC------CcceEEecCCcHHHH
Q 011959 388 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDI 460 (474)
Q Consensus 388 ~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------~~~~~~~~~~t~e~i 460 (474)
++....+..|.++++.+. . . ...++.+.|+++ ||++.|+. ...+|+++..++++|
T Consensus 365 ----g~~~~~~~~~~~~~~~~~-~-~------------~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i 426 (449)
T 3qgu_A 365 ----GFSVYGGDDAPYIWVGFP-G-K------------PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENI 426 (449)
T ss_dssp ----TCCEEESSSSSEEEEECT-T-S------------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHH
T ss_pred ----CCeeeCCCCeeEEEEECC-C-C------------CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHH
Confidence 433333345777777763 1 0 125677788875 99998763 356789988899999
Q ss_pred HHHHHHHHHHHhh
Q 011959 461 QHTITAAEKVLRQ 473 (474)
Q Consensus 461 ~~~l~~l~~~~~~ 473 (474)
++++++|++++++
T Consensus 427 ~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 427 LEAVRRFKEAYGK 439 (449)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=262.15 Aligned_cols=343 Identities=13% Similarity=0.026 Sum_probs=222.7
Q ss_pred CCCEEEeccCChhhccCCC--CCHHHHHHHHHHHHh--cC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEE--eCC
Q 011959 97 DGNEYIDYVGSWGPAIIGH--ADDQVLAALGETMKK--GT-SFG---APCLLENVLAEMVISAVP---SIEMVRF--VNS 163 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~--~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~--~~s 163 (474)
+|+.+|||..|...++.|+ .+|.+.+++.+++.+ .. .|+ +..++++++++++...++ ..++|++ ++|
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~g 107 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLG 107 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCC
Confidence 3677899998854445554 458999999998732 11 222 123455566666543322 3579999 999
Q ss_pred HHHHHHHHHHHhHhhcCC-----cEEEEEeCCCCCCchhHHHhcCCC-CccCCCCCCCCCCCCCCCceEEccCCCHHHHH
Q 011959 164 GTEACMGVLRLARAFTGR-----ERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (474)
Q Consensus 164 GseA~~~al~~ar~~~~~-----~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le 237 (474)
|++|++.++++++.+.++ ++|++.+++||++...+. ..|.. +..++.....+ .. .|+++|+
T Consensus 108 g~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~---------~~---~d~~~l~ 174 (412)
T 1ajs_A 108 GTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFT-TAGFKDIRSYRYWDTEK---------RG---LDLQGFL 174 (412)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHH-HTTCSCEEEEECEETTT---------TE---ECHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHH-HcCCceeEEEeeecCCC---------Cc---cCHHHHH
Confidence 999999998866555566 899999999999654433 33432 22211100000 00 1799999
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC---CCccccccCCCCc----e
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA---YGGAQEYFGVTPD----L 309 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g---~~~~~~~~g~~pd----i 309 (474)
+.+++++.++++++++.++|++|.+.+ .+++++|+++|++||++||+||+|.+| +.+ .......+...+| +
T Consensus 175 ~~l~~~~~~~~~v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (412)
T 1ajs_A 175 SDLENAPEFSIFVLHACAHNPTGTDPT-PEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCA 253 (412)
T ss_dssp HHHHHSCTTCEEEEESSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEE
T ss_pred HHHHhCCCCcEEEEECCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEE
Confidence 998765445677766777777887654 566999999999999999999999998 654 2323332221233 4
Q ss_pred eehhhhcCC-CcceEEEEe---cHHHHHhhcCCCCcccccCCC-CChHHHHHHHHHHHHhc------C--CCHHHHHHHH
Q 011959 310 TTLGKIIGG-GLPVGAYGG---RRDIMEMVAPAGPMYQAGTLS-GNPLAMTAGIHTLKRLK------E--PGTYEYLNKI 376 (474)
Q Consensus 310 ~t~sK~l~~-G~~iG~~~~---~~~i~~~~~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~------~--~~~~~~~~~~ 376 (474)
.++||+++. |+|+||+++ ++++++.+...-...+..+++ .|+++++++.++|+... + ++..++++++
T Consensus 254 ~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (412)
T 1ajs_A 254 QSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSM 333 (412)
T ss_dssp EECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHH
Confidence 489999996 999999998 887444322100011223455 58999999999997542 1 4566677777
Q ss_pred HHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecC-C
Q 011959 377 TGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-H 455 (474)
Q Consensus 377 ~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~-~ 455 (474)
++++.+.|+++....++....+..|.++++.+. ...+.+.+.++||++.++ +|+++. +
T Consensus 334 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gv~v~~~----~Ris~~~~ 392 (412)
T 1ajs_A 334 RSELRARLEALKTPGTWNHITDQIGMFSFTGLN-----------------PKQVEYLINQKHIYLLPS----GRINMCGL 392 (412)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC-----------------HHHHHHHHHTTCEECCTT----SEEEGGGC
T ss_pred HHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC-----------------HHHHHHHHHhCCEEecCC----cEEEeeeC
Confidence 777777777652000122112233444443221 134455566889999874 588766 4
Q ss_pred cHHHHHHHHHHHHHHHhhC
Q 011959 456 SSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~~ 474 (474)
+++++++++++|+++++++
T Consensus 393 ~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 393 TTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp CTTTHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998764
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=268.96 Aligned_cols=339 Identities=13% Similarity=0.087 Sum_probs=227.4
Q ss_pred CEEEeccCChhhccCCCCCHHH--HHHHHHHHHh-c-CCCCC---CCHHHHHHHHHHHhhC-C-CCCe---EEEeCCHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQV--LAALGETMKK-G-TSFGA---PCLLENVLAEMVISAV-P-SIEM---VRFVNSGTE 166 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v--~~a~~~~~~~-~-~~~~~---~~~~~~~la~~l~~~~-~-~~~~---v~~~~sGse 166 (474)
+++|||..|... .+|+ +|.+ ++++.+++.+ . ..|+. ..++++++++++.+.. + ..++ +++++||++
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~ 124 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTH 124 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchH
Confidence 568999998532 5774 5666 7777776644 2 22321 3456666666665543 3 4567 999999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
|++.+++.. ...+++|++.+++||++...+....|..+..++.....+ ..|+++|++.+++++.+
T Consensus 125 al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~l~~~~~~ 189 (430)
T 2x5f_A 125 GLSLVGDLF--VNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDG-------------HYTTDSLVEALQSYNKD 189 (430)
T ss_dssp HHHHHHHHH--CCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTS-------------CBCSHHHHHHHHHCCSS
T ss_pred HHHHHHHHH--hCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccC-------------CcCHHHHHHHHHhcCCC
Confidence 999999952 234578999999999865433220333222211110000 01789999999864446
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHH-----hCCEEEEeccccCc-ccCCCc-c-c-cccCCCCc------eee
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-----NGALLIFDEVMTGF-RLAYGG-A-Q-EYFGVTPD------LTT 311 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-----~g~llI~DEv~~g~-r~g~~~-~-~-~~~g~~pd------i~t 311 (474)
++++++..++|++|.+.+ .+++++|.++|++ ||++||+||+|++| +.+..+ . . ...+..++ +.+
T Consensus 190 ~~~v~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 268 (430)
T 2x5f_A 190 KVIMILNYPNNPTGYTPT-HKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDG 268 (430)
T ss_dssp EEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEE
T ss_pred CEEEEEcCCCCCCCCcCC-HHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEe
Confidence 677666555788887764 5569999999999 99999999999988 555321 2 1 22233444 348
Q ss_pred hhhhcC-CCcceEEEEe---cHHHHHhhcCCCCcccc----cCCCCChHHHHHHHHHHH-Hh---cC-CCHHHHHHHHHH
Q 011959 312 LGKIIG-GGLPVGAYGG---RRDIMEMVAPAGPMYQA----GTLSGNPLAMTAGIHTLK-RL---KE-PGTYEYLNKITG 378 (474)
Q Consensus 312 ~sK~l~-~G~~iG~~~~---~~~i~~~~~~~~~~~~~----~t~~~~~~~~aaa~aal~-~~---~~-~~~~~~~~~~~~ 378 (474)
+||.++ +|+|+||+++ ++++++.+.. .... .+++.|+++++++.++|+ .. +. +...++++++.+
T Consensus 269 ~sK~~~~~G~riG~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 345 (430)
T 2x5f_A 269 ATKEFFAWGFRVGFMTFGTSDQTTKEVLEA---KVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYE 345 (430)
T ss_dssp HHHHTTCGGGCCEEEEEBCCCHHHHHHHHH---HHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCeEEEEEecCCHHHHHHHHH---HHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 999998 7999999999 9999888762 2222 577899999999999997 42 11 224455555555
Q ss_pred HHHHHHHHHhhhcCCeeEEeee-ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccCCcceEEecC-C
Q 011959 379 ELTQGIIDAGKKAGHAICGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQFEAGFTSLA-H 455 (474)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~~~~~-~ 455 (474)
++.+.|++.....++. ..++. |.++++.+. . . ...++.+.|++ +||++.+++...+|+++. .
T Consensus 346 ~l~~~L~~~~~~~g~~-~~~~~~g~~~~~~~~-~-~------------~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~~ 410 (430)
T 2x5f_A 346 VTKEVVYADQYHSHWQ-AYDFNSGYFMAIKVH-D-V------------DPEALRKHLIDKYSIGVIALNATDIRIAFSCV 410 (430)
T ss_dssp HHHHHHTCGGGTTTEE-ECCCCBSSEEEEEES-S-S------------CHHHHHHHHHHHHCEECEECSSSEEEEEGGGS
T ss_pred HHHHHHHhhCCCCCce-eeCCCceEEEEeCCC-C-C------------CHHHHHHHHHHhCCEEEecCCCCeEEEEEecC
Confidence 5555554321123332 22333 456777774 1 0 12568888887 999999975567899877 7
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011959 456 SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~ 473 (474)
+++++++++++|++++++
T Consensus 411 ~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 411 EKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp CGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999999875
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=259.93 Aligned_cols=339 Identities=16% Similarity=0.076 Sum_probs=221.8
Q ss_pred CCCEEEeccCChhhccCC--CCCHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCCCCCeEEE--eCCHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIG--HADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVPSIEMVRF--VNSGTEA 167 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~~~~~v~~--~~sGseA 167 (474)
.|+.+|||..|...++.+ +.+|.+.+++.+++++...++| ..++++++++++.......++|++ ++||++|
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a 103 (394)
T 2ay1_A 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGA 103 (394)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHH
T ss_pred CCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhH
Confidence 356689999986555555 5689999999998865322222 245556666665332114578999 9999999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
++.++++.+.+.++++|++.+++||++...+.. .|..+...+....... . .|++++++.++++++.+
T Consensus 104 ~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~---------~---~d~~~l~~~l~~~~~~~ 170 (394)
T 2ay1_A 104 LRQALELARMANPDLRVFVSDPTWPNHVSIMNF-MGLPVQTYRYFDAETR---------G---VDFEGMKADLAAAKKGD 170 (394)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHH-HTCCEEEEECEETTTT---------E---ECHHHHHHHHHTCCTTC
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH-cCCceEEEecccccCC---------c---cCHHHHHHHHHhCCCCC
Confidence 999999766555778899999999996554433 3432221111000000 0 17999999998653346
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC--CCcccccc-CCCCce---eehhhhcC-CC
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYF-GVTPDL---TTLGKIIG-GG 319 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g--~~~~~~~~-g~~pdi---~t~sK~l~-~G 319 (474)
++++++.++|++|.+.+ .+++++|.++|++||++||+||+|++| +.+ .......+ ...+++ .++||+++ +|
T Consensus 171 ~~~~~~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 249 (394)
T 2ay1_A 171 MVLLHGCCHNPTGANLT-LDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYR 249 (394)
T ss_dssp EEEEESSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGG
T ss_pred EEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcC
Confidence 77777888888888765 555999999999999999999999988 542 11122211 123443 37999999 89
Q ss_pred cceEEEEe---cHHHHHhhcCCCCcccccCC-CCChHHHHHHHHHHHHh------cC--CCHHHHHHHHHHHHHHHHHHH
Q 011959 320 LPVGAYGG---RRDIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 320 ~~iG~~~~---~~~i~~~~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~l~~~L~~~ 387 (474)
+|+||+++ ++++++.+...-...+..++ +.|+++++++.++|+.. .+ ++..++++++++++.+.|+++
T Consensus 250 ~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 329 (394)
T 2ay1_A 250 ERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDL 329 (394)
T ss_dssp GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999987 67655443210000112233 34899999999888754 11 456667777777777777765
Q ss_pred hhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecC-CcHHHHHHHHHH
Q 011959 388 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITA 466 (474)
Q Consensus 388 ~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~-~t~e~i~~~l~~ 466 (474)
....++....+..|.++++.+. . ..+.+.+.++||++.++ +|+++. ++++++++++++
T Consensus 330 ~~~~~~~~~~~~~g~~~~~~~~-------------~----~~~~~~l~~~gi~v~~~----~Ris~~~~~~~~i~~~~~~ 388 (394)
T 2ay1_A 330 SGSDRFGFVAEHRGMFSRLGAT-------------P----EQVKRIKEEFGIYMVGD----SRINIAGLNDNTIPILARA 388 (394)
T ss_dssp HTSSTTTHHHHCCSSEEECCCC-------------H----HHHHHHHHHHCEECCTT----CEEEGGGCCTTTHHHHHHH
T ss_pred CCCCCeeEEcCCceEEEeeCCC-------------H----HHHHHHHHhCCEEecCC----CeEEeecCCHhhHHHHHHH
Confidence 3211121112234556554331 0 34566777899999874 577654 599999999999
Q ss_pred HHHH
Q 011959 467 AEKV 470 (474)
Q Consensus 467 l~~~ 470 (474)
|+++
T Consensus 389 l~~~ 392 (394)
T 2ay1_A 389 IIEV 392 (394)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9876
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-29 Score=247.98 Aligned_cols=326 Identities=20% Similarity=0.181 Sum_probs=229.9
Q ss_pred CCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHh-cCC-----C-CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTS-----F-GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~-----~-~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~ 168 (474)
||++|+||.++ +++|+ .+|++++++.+++++ +.. . ....+...++++.++++++. +..+++++|++++
T Consensus 44 ~g~~~i~~~~~---~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~i~~~sG~~a~ 119 (401)
T 2bwn_A 44 GKQDITVWCGN---DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-EAALVFSSAYNAN 119 (401)
T ss_dssp CEEEEEECSCS---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-SEEEEESCHHHHH
T ss_pred CCCcEEEeeCC---CcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-CcEEEECCcHHHH
Confidence 78999999987 66676 488999999999986 221 1 12456788999999999864 4444557788899
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC-CCe
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEI 247 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~ 247 (474)
..++++.....+++.|++.++.|++ ....+...|. ++..+|++|+++|++++++.. +++
T Consensus 120 ~~~~~~l~~~~~gd~Vl~~~~~~~~-~~~~~~~~g~-------------------~~~~v~~~d~~~le~~l~~~~~~~~ 179 (401)
T 2bwn_A 120 DATLSTLRVLFPGLIIYSDSLNHAS-MIEGIKRNAG-------------------PKRIFRHNDVAHLRELIAADDPAAP 179 (401)
T ss_dssp HHHHHHHHHHSTTCEEEEETTCCHH-HHHHHHHSCC-------------------CEEEECTTCHHHHHHHHHHSCTTSC
T ss_pred HHHHHHHhcCCCCCEEEECchhhHH-HHHHHHHcCC-------------------eEEEEcCCCHHHHHHHHHhhccCCc
Confidence 9988853222244566666555544 3333332222 356677779999999997543 368
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--ccCCCccccccCC--CCce--eehhhhcC-CC
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV--TPDL--TTLGKIIG-GG 319 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~--~pdi--~t~sK~l~-~G 319 (474)
++|++++++|++|.+.+ +++|.++|++||++||+||+|+ |+ +.|..+. ..+++ .+|+ .+|||+++ .|
T Consensus 180 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~~G 254 (401)
T 2bwn_A 180 KLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGVFG 254 (401)
T ss_dssp EEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCSCC
T ss_pred eEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccCCC
Confidence 89999999999999998 9999999999999999999997 43 3443333 44454 2344 48999998 34
Q ss_pred cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE
Q 011959 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (474)
||+++++++++.+......+.. +.+.++++++++.++++.+++ ++..++++++.+++.+.|+++ ...+.
T Consensus 255 ---G~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~-- 326 (401)
T 2bwn_A 255 ---GYIAASARMVDAVRSYAPGFIF-STSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--GMPII-- 326 (401)
T ss_dssp ---EEEEECHHHHHHHHHHCHHHHT-SBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--TCCBC--
T ss_pred ---CEEecCHHHHHHHHHhCcCcee-cCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC--CCccc--
Confidence 8999999988877531112222 224567889999999998865 367888888899999988875 22222
Q ss_pred EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccCC-------cceEEecC--CcHHHHHHHHHH
Q 011959 397 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-------EAGFTSLA--HSSDDIQHTITA 466 (474)
Q Consensus 397 v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-------~~~~~~~~--~t~e~i~~~l~~ 466 (474)
...+.++++.+.. .....++.+.|+ ++||++.++.. ..+|+++. +|++++++++++
T Consensus 327 -~~~~~~~~~~~~~-------------~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~ 392 (401)
T 2bwn_A 327 -DHGSHIVPVVIGD-------------PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHA 392 (401)
T ss_dssp -CCSSSCEEEECCC-------------HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHH
T ss_pred -CCCCCeEEEEeCC-------------hHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHH
Confidence 2345577776631 123457888886 78999987531 25777654 699999999999
Q ss_pred HHHHHhh
Q 011959 467 AEKVLRQ 473 (474)
Q Consensus 467 l~~~~~~ 473 (474)
|++++++
T Consensus 393 l~~~~~~ 399 (401)
T 2bwn_A 393 MDLLWAR 399 (401)
T ss_dssp HHHHC--
T ss_pred HHHHHHh
Confidence 9998765
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-30 Score=257.24 Aligned_cols=332 Identities=12% Similarity=0.093 Sum_probs=226.1
Q ss_pred CEEEeccCChhhccCCCCC--HHHHHHHHHHHHhcCC--CC---CCCHHHHHHHHHHHhhCC---CCC--eEEEeCCHHH
Q 011959 99 NEYIDYVGSWGPAIIGHAD--DQVLAALGETMKKGTS--FG---APCLLENVLAEMVISAVP---SIE--MVRFVNSGTE 166 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~~~--~~---~~~~~~~~la~~l~~~~~---~~~--~v~~~~sGse 166 (474)
..+|||..|++.++.|+.+ |.|++++.+++++... |+ +..++++++++++..... ..+ ++++|+||++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 4578999987667777765 9999999999887322 22 234677788888766543 356 8999999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC----C---CHHHHHHH
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----N---DVSALENL 239 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~---d~~~le~~ 239 (474)
|+..++++...+.++++|++.+++|+++...+ ...|.. ++.+|+ + |+++|++.
T Consensus 129 al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~-~~~g~~-------------------~~~v~~~~~~~~~~d~~~l~~~ 188 (420)
T 4f4e_A 129 ALKIGADFLRTLNPKAKVAISDPSWENHRALF-DMAGFE-------------------VVAYPYYDAKTNGVNFDGMLAA 188 (420)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEESCCHHHHHHH-HHTTCC-------------------EEEEECEETTTTEECHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHH-HHcCCe-------------------EEEeeeeccccCccCHHHHHHH
Confidence 99999876545667789999999998854433 333332 222222 2 89999999
Q ss_pred HhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC--Cccc-cccCCCCc---eeeh
Q 011959 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQ-EYFGVTPD---LTTL 312 (474)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~--~~~~-~~~g~~pd---i~t~ 312 (474)
+++++++++++++++++|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+. .... ...+..++ +.+|
T Consensus 189 l~~~~~~~~~v~i~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 267 (420)
T 4f4e_A 189 LNGYEPGTIVVLHACCHNPTGVDLNDAQ-WAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSF 267 (420)
T ss_dssp HTTCCTTCEEEEECSSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEEC
T ss_pred HHhCCCCCEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeC
Confidence 9876567889999989999998776554 999999999999999999999988 5431 1111 11122233 2379
Q ss_pred hhhcC-CCcceEEEEe---cHHHHHhhcC-CCCcccccCCCCChHHHHHHHHHHHHh------cC--CCHHHHHHHHHHH
Q 011959 313 GKIIG-GGLPVGAYGG---RRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGE 379 (474)
Q Consensus 313 sK~l~-~G~~iG~~~~---~~~i~~~~~~-~~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~ 379 (474)
||.++ .|+|+||+++ ++++++.+.. ........+.+.+++++.++.+.|+.. ++ +++++++++++++
T Consensus 268 SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (420)
T 4f4e_A 268 SKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNG 347 (420)
T ss_dssp TTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 7999999853 5665554321 001112334456777887777766532 11 4556667777777
Q ss_pred HHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecCC-cHH
Q 011959 380 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH-SSD 458 (474)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~-t~e 458 (474)
+.+.|+++....++....+..|.++++.+. ...+.+.+.++||++.+++ |+++.. +++
T Consensus 348 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~-----------------~~~~~~~l~~~gI~v~~~~----Ris~~~~~~~ 406 (420)
T 4f4e_A 348 LVERLKAAGIERDFSFINAQRGMFSYSGLT-----------------SAQVDRLREEFGIYAVSTG----RICVAALNTR 406 (420)
T ss_dssp HHHHHHHTTCSSCCTHHHHSCSSEEECCCC-----------------HHHHHHHHHHHCEECCTTS----EEEGGGCCTT
T ss_pred HHHHHHhcCCCCCceeECCCccEEEEeCCC-----------------HHHHHHHHHhCCEEecCCC----eEEEecCCHH
Confidence 777777653222332222344555544331 1345666778899999864 776654 889
Q ss_pred HHHHHHHHHHHHHh
Q 011959 459 DIQHTITAAEKVLR 472 (474)
Q Consensus 459 ~i~~~l~~l~~~~~ 472 (474)
++++++++|+++++
T Consensus 407 ~i~~~~~~l~~~l~ 420 (420)
T 4f4e_A 407 NLDVVANAIAAVLK 420 (420)
T ss_dssp THHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998863
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-29 Score=252.20 Aligned_cols=338 Identities=13% Similarity=0.052 Sum_probs=226.1
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHH------------HhcCCCC---CCCHHHHHHHHHHHhhCC-----CCCeEE
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETM------------KKGTSFG---APCLLENVLAEMVISAVP-----SIEMVR 159 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~------------~~~~~~~---~~~~~~~~la~~l~~~~~-----~~~~v~ 159 (474)
.+|||.++. ++++ +|.+.+++.++. .....|+ +..+++.++++++.+.++ ..++++
T Consensus 37 ~~i~l~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~ 112 (428)
T 1iay_A 37 GVIQMGLAE--NQLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVV 112 (428)
T ss_dssp SBEECSSCC--CCSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCE
T ss_pred ceeeecccc--chhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEE
Confidence 467887664 5665 478888887532 1112232 245777888888876542 367899
Q ss_pred EeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHH
Q 011959 160 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (474)
Q Consensus 160 ~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~ 239 (474)
+++|++++++.+++.. ...+++|++.+++||++........|..+..++.....++ ..|+++|++.
T Consensus 113 ~~~G~~~ai~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~ 178 (428)
T 1iay_A 113 MAGGATGANETIIFCL--ADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNF------------KITSKAVKEA 178 (428)
T ss_dssp EEEHHHHHHHHHHHHH--CCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTT------------CCCHHHHHHH
T ss_pred EccChHHHHHHHHHHh--CCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCC------------cCCHHHHHHH
Confidence 9999999999999953 2345789999999988544332233433222211100010 0179999998
Q ss_pred Hhc---CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-ccccc-------CCCC
Q 011959 240 FEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF-------GVTP 307 (474)
Q Consensus 240 l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~-------g~~p 307 (474)
+++ ...++++|+++.++|++|.+. +.+++++|.++|++||++||+||+|+++ +.+..+ ....+ ++.+
T Consensus 179 l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (428)
T 1iay_A 179 YENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNK 257 (428)
T ss_dssp HHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCT
T ss_pred HHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCC
Confidence 874 223678777776777888876 4566999999999999999999999987 544322 11111 2236
Q ss_pred c----eeehhhhcC-CCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc---C--CCHHHHHHHH
Q 011959 308 D----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---E--PGTYEYLNKI 376 (474)
Q Consensus 308 d----i~t~sK~l~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~~~~~~~~~~ 376 (474)
| +.|+||++| +|+|+||+++ ++++++.+.. ...+++.|+++++++.++|+... + +++.++++++
T Consensus 258 d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (428)
T 1iay_A 258 DLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARK-----MSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKR 332 (428)
T ss_dssp TSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHH-----HHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHH-----HHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 6 458999999 8999999988 6888887762 12346788999999888876421 1 3455566666
Q ss_pred HHHHHHHHHHHhhhcCCeeEEee-eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC------Ccc
Q 011959 377 TGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEA 448 (474)
Q Consensus 377 ~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------~~~ 448 (474)
++++.+.|+++ ++.. .++ .|+++++.+..... .+.......+.+.|+++ ||++.++. ...
T Consensus 333 ~~~l~~~L~~~----g~~~-~~~~~g~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~ 400 (428)
T 1iay_A 333 HKHFTNGLEVV----GIKC-LKNNAGLFCWMDLRPLLR-------ESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGW 400 (428)
T ss_dssp HHHHHHHHHHT----TCCB-CCCSSSSEEEEECGGGCS-------SSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSE
T ss_pred HHHHHHHHHhc----CCcc-cCCCeeEEEEEechhhcC-------CCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCE
Confidence 77777777654 3222 233 57788887743110 01112345788888876 99998864 235
Q ss_pred eEEecC-CcHHHHHHHHHHHHHHHhh
Q 011959 449 GFTSLA-HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 449 ~~~~~~-~t~e~i~~~l~~l~~~~~~ 473 (474)
+|+++. ++++++++++++|++++++
T Consensus 401 iRis~~~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 401 FRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp EEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 788776 8999999999999999875
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=248.64 Aligned_cols=322 Identities=14% Similarity=0.124 Sum_probs=223.8
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 177 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~ 177 (474)
+.+|||.++. ++++ .+|+|++++.++++....| +.....+|.+.++++++ ..+++++++||++|++.+++..
T Consensus 30 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l-- 102 (365)
T 3get_A 30 KEVIKLASNE--NPFG-TPPKAIECLRQNANKAHLY--PDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK-- 102 (365)
T ss_dssp SCCEECSSCC--CTTC-SCHHHHHHHHHHGGGTTSC--CCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH--
T ss_pred CceEEecCCC--CCCC-CCHHHHHHHHHHHHhhccC--CCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH--
Confidence 6789999885 5566 7899999999998764333 22222567777777765 4689999999999999999852
Q ss_pred hcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccC
Q 011959 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (474)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (474)
..++++|++.+++|+++... +...|..+..++.. ... . .|+++|++.++ +++++|+++.++|
T Consensus 103 ~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~-~~~---------~----~d~~~l~~~l~---~~~~~v~~~~p~n 164 (365)
T 3get_A 103 LNSKNAFLQAGVTFAMYEIY-AKQCGAKCYKTQSI-THN---------L----DEFKKLYETHK---DEIKLIFLCLPNN 164 (365)
T ss_dssp CCTTCEEEECSSCCTHHHHH-HHHHTCEEEECSSS-SCC---------H----HHHHHHHHHTT---TTEEEEEEESSCT
T ss_pred hCCCCEEEEeCCChHHHHHH-HHHcCCEEEEEecC-CCC---------C----CCHHHHHHHhC---CCCCEEEEcCCCC
Confidence 34567888888888875443 33344433222110 000 0 17888888886 3688888877788
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c--cCC--Cccccc---cCCCCceeehhhhcC-CCcceEEEEec
Q 011959 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAY--GGAQEY---FGVTPDLTTLGKIIG-GGLPVGAYGGR 328 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r--~g~--~~~~~~---~g~~pdi~t~sK~l~-~G~~iG~~~~~ 328 (474)
++|.+.+.++ +.+|+++| ++|++||+||+|++| . .+. ...... .+....+.++||.++ +|+|+||++++
T Consensus 165 ptG~~~~~~~-l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 242 (365)
T 3get_A 165 PLGECLDASE-ATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIAN 242 (365)
T ss_dssp TTCCCCCHHH-HHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEEC
T ss_pred CCCCCcCHHH-HHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcC
Confidence 8999887444 66666666 679999999999877 3 432 112222 222233448999998 89999999999
Q ss_pred HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEE
Q 011959 329 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (474)
Q Consensus 329 ~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (474)
+++++.+.. ...+++.|+++++++.++|+..+. +...++++++.+++.+.|++. ++. ..++.|.++++.
T Consensus 243 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~-~~~~~~~~~~~~ 312 (365)
T 3get_A 243 ANIISAFYK-----LRAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH----NIK-IIDSYTNFITYF 312 (365)
T ss_dssp HHHHHHHHH-----HSCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----TCE-ECCCSSSEEEEE
T ss_pred HHHHHHHHH-----hcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC----CCE-ECCCCCeEEEEE
Confidence 999988863 123467899999999998873211 334455555555555555543 432 345678887777
Q ss_pred EecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
+... ...++.+.|.++||++.++. ...+|+++. +++++++++++|+++++
T Consensus 313 ~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~-~~~~i~~l~~~l~~~l~ 365 (365)
T 3get_A 313 FDEK--------------NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG-TSYENEKFFTEFDKILR 365 (365)
T ss_dssp CSSS--------------CHHHHHHHHHTTTEECEECGGGTCSEEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred CCCC--------------CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC-CHHHHHHHHHHHHHHhC
Confidence 6421 13578889999999998875 456888876 89999999999998863
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-29 Score=248.92 Aligned_cols=335 Identities=16% Similarity=0.179 Sum_probs=226.1
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 170 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~ 170 (474)
|+.+|||..+. ..++ .+|.+.+++.+.++... .|. +..+++.++++++.+.++ ..++|++++||++|++.
T Consensus 30 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~ 106 (385)
T 1b5p_A 30 GVDLVALTAGE--PDFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFN 106 (385)
T ss_dssp TCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHH
T ss_pred CCCEEEecCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHH
Confidence 45567887773 2333 47899999999887632 232 235678888888877654 35799999999999999
Q ss_pred HHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEE
Q 011959 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (474)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (474)
+++.. ..+++.|++.+++|+++... +...|..+..++.....++ ..|+++|++.++. ++++|
T Consensus 107 ~~~~l--~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~---~~~~v 168 (385)
T 1b5p_A 107 LFQAI--LDPGDEVIVLSPYWVSYPEM-VRFAGGVVVEVETLPEEGF------------VPDPERVRRAITP---RTKAL 168 (385)
T ss_dssp HHHHH--CCTTCEEEEEESCCTHHHHH-HHHTTCEEEEEECCGGGTT------------CCCHHHHHTTCCT---TEEEE
T ss_pred HHHHh--cCCCCEEEEcCCCchhHHHH-HHHcCCEEEEeecCcccCC------------CCCHHHHHHhcCC---CCEEE
Confidence 99852 34567899999999875433 3334443222111100010 0178899888763 56777
Q ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCc--eeehhhhcC-CCcceEEEE
Q 011959 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD--LTTLGKIIG-GGLPVGAYG 326 (474)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pd--i~t~sK~l~-~G~~iG~~~ 326 (474)
++..++|++|.+.+..+ +++|.++|++||++||+||+|..| ..+.......+.-..+ +.+|||.++ +|+|+||++
T Consensus 169 ~~~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~ 247 (385)
T 1b5p_A 169 VVNSPNNPTGAVYPKEV-LEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYAC 247 (385)
T ss_dssp EEESSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEE
T ss_pred EEeCCCCCCCCCcCHHH-HHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEE
Confidence 77666778888776554 999999999999999999999887 4432222222211112 237999999 799999999
Q ss_pred ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH---hcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeec
Q 011959 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR---LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 401 (474)
Q Consensus 327 ~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~---~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g 401 (474)
+++++++.+.. .....+++.+++++.++.++|+. ..+ ++..++++++++++.+.|+++ ++....+..|
T Consensus 248 ~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~ 320 (385)
T 1b5p_A 248 GPKEVIKAMAS---VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL----GLKAVRPSGA 320 (385)
T ss_dssp CCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCCBCCCSBT
T ss_pred eCHHHHHHHHH---HHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC----CCeecCCCee
Confidence 99999888762 33345677889999998888864 222 345566667777777777664 3222223334
Q ss_pred eeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.++++.+.... ....++.+.|.++||.+.++. .+.+|+++..+++++++++++|++++++
T Consensus 321 ~~~~~~~~~~~------------~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~~~~~~i~~~l~~l~~~l~~ 384 (385)
T 1b5p_A 321 FYVLMDTSPIA------------PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLGR 384 (385)
T ss_dssp TEEEEECTTTC------------SSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC--
T ss_pred EEEEEecCCCC------------CCHHHHHHHHHHCCeEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 45555552100 012567888889999998863 2468999889999999999999887653
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=253.89 Aligned_cols=331 Identities=13% Similarity=0.047 Sum_probs=223.5
Q ss_pred CEEEeccCChhhccCCCCC--HHHHHHHHH-HHHhcC--CCC---CCCHHHHHHHHHHHhhCC---CCC--eEEEeCCHH
Q 011959 99 NEYIDYVGSWGPAIIGHAD--DQVLAALGE-TMKKGT--SFG---APCLLENVLAEMVISAVP---SIE--MVRFVNSGT 165 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~--p~v~~a~~~-~~~~~~--~~~---~~~~~~~~la~~l~~~~~---~~~--~v~~~~sGs 165 (474)
..+|||..|++.++.++.+ |.|++++.+ .+.... .|+ +..+++.++++++..... ..+ ++++++||+
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~ 105 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcH
Confidence 3578999887656677755 999999999 887532 222 224677788888766554 467 899999999
Q ss_pred HHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC----C---CHHHHHH
Q 011959 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----N---DVSALEN 238 (474)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~---d~~~le~ 238 (474)
+|++.++++.....++++|++.+++|+++...+ ...|..+ +.+++ + |+++|++
T Consensus 106 ~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~-~~~g~~~-------------------~~~~~~~~~~~~~d~~~l~~ 165 (397)
T 3fsl_A 106 GALKVGADFLKRYFPESGVWVSDPTWENHVAIF-AGAGFEV-------------------STYPWYDEATNGVRFNDLLA 165 (397)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHH-HHTTCCE-------------------EEECCEETTTTEECHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHH-HHcCCce-------------------EEEeeeeccCCcCcHHHHHH
Confidence 999999876555667789999999998854433 3334322 22222 2 8999999
Q ss_pred HHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC--CCcccccc-CCCCc---eee
Q 011959 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYF-GVTPD---LTT 311 (474)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g--~~~~~~~~-g~~pd---i~t 311 (474)
.++++++++++++++.++|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+ .......+ +..++ +.+
T Consensus 166 ~l~~~~~~~~~v~~~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 244 (397)
T 3fsl_A 166 TLKTLQAGSIVLLHPCCHNPTGADLTNDQ-WDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNS 244 (397)
T ss_dssp HHTTCCTTCEEEECSSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEE
T ss_pred HHHhCCCCCEEEEeCCCCCCCCcCCCHHH-HHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEec
Confidence 99876556788888888888998876555 999999999999999999999988 432 11111111 22223 347
Q ss_pred hhhhcC-CCcceEEEEe---cHHHHHhhcCC-CCcccccCCCCChHHHHHHHHHHHHh------cC--CCHHHHHHHHHH
Q 011959 312 LGKIIG-GGLPVGAYGG---RRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITG 378 (474)
Q Consensus 312 ~sK~l~-~G~~iG~~~~---~~~i~~~~~~~-~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~ 378 (474)
|||.++ +|+|+||+++ ++++++.+... .......+.+.+.+++.++.++|+.. .+ ++..++++++.+
T Consensus 245 ~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (397)
T 3fsl_A 245 FSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQ 324 (397)
T ss_dssp CTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 7999999964 55665543210 01111234455777877777666521 11 456677777788
Q ss_pred HHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecCC-cH
Q 011959 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH-SS 457 (474)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~-t~ 457 (474)
++.+.|++.....++....+..|.++++.+. ...+.+.+.++||++.+++ |+++.. ++
T Consensus 325 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gi~v~~g~----Ris~~~~~~ 383 (397)
T 3fsl_A 325 ELVKVLSTEMPERNFDYLLNQRGMFSYTGLS-----------------AAQVDRLREEFGVYLIASG----RMCVAGLNT 383 (397)
T ss_dssp HHHHHHHHHCTTSCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHTTCEECCTTC----EEEGGGCCT
T ss_pred HHHHHHHhcCCCCCceeecCCceEEEecCCC-----------------HHHHHHHHHhCCEEECCCC----eEEEEecCH
Confidence 8888887763221222222334555554331 1345667778999999875 776554 88
Q ss_pred HHHHHHHHHHHHHH
Q 011959 458 DDIQHTITAAEKVL 471 (474)
Q Consensus 458 e~i~~~l~~l~~~~ 471 (474)
++|++++++|++++
T Consensus 384 ~~i~~~~~~l~~~l 397 (397)
T 3fsl_A 384 ANVQRVAKAFAAVM 397 (397)
T ss_dssp TTHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHhhC
Confidence 99999999998763
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-29 Score=251.71 Aligned_cols=339 Identities=11% Similarity=0.096 Sum_probs=221.9
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-----C-CCC---CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-----T-SFG---APCLLENVLAEMVISAVP-SIEMVRFVNSGT 165 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----~-~~~---~~~~~~~~la~~l~~~~~-~~~~v~~~~sGs 165 (474)
.+|+++|||..| ++....+|.|++++.+++++. . .|+ ...+++.++++++.+.++ ..++|+|++|++
T Consensus 53 ~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~ 129 (432)
T 3ei9_A 53 YPDAQVISLGIG---DTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAK 129 (432)
T ss_dssp CTTCCCEECSSC---CCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCeEEccCC---CCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChH
Confidence 357889999998 666568999999999998852 1 122 124556666666654334 568999999999
Q ss_pred HHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCC
Q 011959 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (474)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (474)
+++..+.. ...+++.|++.+++|++....+......+..... . ....++..++.++.+.+...+++. +
T Consensus 130 ~al~~l~~---l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~l~~~-~ 197 (432)
T 3ei9_A 130 CDISRLQV---MFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTD-V-------QKYGNIEYMRCTPENGFFPDLSTV-G 197 (432)
T ss_dssp HHHHHHHH---HHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETT-T-------TEETTCEEEECCGGGTTSCCGGGC-C
T ss_pred HHHHHHHH---HcCCCCEEEEeCCCCHHHHHHHHHcCCccccccc-c-------cccCceEEeccCcccCCcCChhhC-C
Confidence 99987433 3456788999999999976655444332211100 0 000112333332111111112222 3
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcccccc-C---CCCceeehhhhcC-CC
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF-G---VTPDLTTLGKIIG-GG 319 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~-g---~~pdi~t~sK~l~-~G 319 (474)
++++|+++.++|++|.+.+.++ +++|+++|++||++||+||+|++| ..+.......+ + ....+.||||++| +|
T Consensus 198 ~~~~v~l~~p~NPtG~~~~~~~-l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 276 (432)
T 3ei9_A 198 RTDIIFFCSPNNPTGAAATREQ-LTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTG 276 (432)
T ss_dssp CCSEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTT
T ss_pred CCCEEEEeCCCCCCCCCCCHHH-HHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcc
Confidence 5667777777888898876555 999999999999999999999988 54433222222 1 2223458999999 89
Q ss_pred cceEEEEecHHH--------HHhhcCCCCcccccCCCCChHHHHHHHHHHHH-hcC--CCHHHHHHHHHHHHHHHHHHHh
Q 011959 320 LPVGAYGGRRDI--------MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKE--PGTYEYLNKITGELTQGIIDAG 388 (474)
Q Consensus 320 ~~iG~~~~~~~i--------~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-~~~--~~~~~~~~~~~~~l~~~L~~~~ 388 (474)
+|+||+++++++ ++.+. ......+++.++++++++.++++. ..+ ++..++++++.+++++.|++.
T Consensus 277 ~r~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 352 (432)
T 3ei9_A 277 VRLGWTVIPKKLLYSDGFPVAKDFN---RIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL- 352 (432)
T ss_dssp TCCEEEECCTTCBCTTSCBHHHHHH---HHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cceEEEEEChHHhhcchHHHHHHHH---HHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 999999999887 56554 222334556889999998888742 111 455666777777777777654
Q ss_pred hhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC------CcceEEecCCcHHHHH
Q 011959 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQ 461 (474)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~~~~~~~t~e~i~ 461 (474)
++....+..|.++++.+... ...++.+.|++ +||++.|+. ...+|+++..++++|+
T Consensus 353 ---g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~ 415 (432)
T 3ei9_A 353 ---GYDVYGGKNAPYVWVHFPNQ--------------SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENIL 415 (432)
T ss_dssp ---TCCEEECSSSSEEEEECTTS--------------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHH
T ss_pred ---CceecCCCcceEEEEECCCC--------------CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHH
Confidence 43333234677777776411 12456677765 499998752 3468999999999999
Q ss_pred HHHHHHHHHH
Q 011959 462 HTITAAEKVL 471 (474)
Q Consensus 462 ~~l~~l~~~~ 471 (474)
+++++|++--
T Consensus 416 ~~l~rl~~~~ 425 (432)
T 3ei9_A 416 EACRRFKQLY 425 (432)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998753
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-29 Score=249.89 Aligned_cols=343 Identities=10% Similarity=-0.012 Sum_probs=221.1
Q ss_pred CEEEeccCChhhcc-CCCCCHHHHHHHHHHHHhcC--CCC---CCCHHHHHHHHHHHhh------C---CCCCeEEEeCC
Q 011959 99 NEYIDYVGSWGPAI-IGHADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISA------V---PSIEMVRFVNS 163 (474)
Q Consensus 99 ~~~iD~~~~~~~~~-lG~~~p~v~~a~~~~~~~~~--~~~---~~~~~~~~la~~l~~~------~---~~~~~v~~~~s 163 (474)
+.+|||..+..... ....+|.+++++.+++.+.. .|+ ...+++.++++++.+. . ...++|++++|
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g 112 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG 112 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC
Confidence 56789888854321 23479999999999987642 232 2346777788887731 1 14679999999
Q ss_pred HHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-CCHHHHHHHHhc
Q 011959 164 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFEN 242 (474)
Q Consensus 164 GseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~~le~~l~~ 242 (474)
|++|++.+++.. ..++++|++.+++||++... +...|..+..++..... .+ .|+++|++.++.
T Consensus 113 ~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~-~~~~g~~~~~v~~~~~~-------------~~~~d~~~l~~~l~~ 176 (416)
T 1bw0_A 113 GSHGILMAITAI--CDAGDYALVPQPGFPHYETV-CKAYGIGMHFYNCRPEN-------------DWEADLDEIRRLKDD 176 (416)
T ss_dssp HHHHHHHHHHHH--CCTTCEEEEEESCCTHHHHH-HHHTTCEEEEEEEEGGG-------------TTEECHHHHHHHCCT
T ss_pred hHHHHHHHHHHh--CCCCCEEEEcCCCcHhHHHH-HHHcCcEEEEeecCccc-------------CCCCCHHHHHHHhcc
Confidence 999999999953 33468899999999986543 33334322111100000 01 179999998863
Q ss_pred CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-----CccccccCCCCc---eeehh
Q 011959 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-----GGAQEYFGVTPD---LTTLG 313 (474)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-----~~~~~~~g~~pd---i~t~s 313 (474)
++++|++..++|++|.+.+ ++++++|.++|++||++||+||+|++| +.+. ......++..++ +.++|
T Consensus 177 ---~~~~v~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~s 252 (416)
T 1bw0_A 177 ---KTKLLIVTNPSNPCGSNFS-RKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTA 252 (416)
T ss_dssp ---TEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEEST
T ss_pred ---CCeEEEEeCCCCCCCcccC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecch
Confidence 4555555555777888765 566999999999999999999999988 5553 222222222222 23799
Q ss_pred hhcC-CCcceEEEEecHH--HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHH
Q 011959 314 KIIG-GGLPVGAYGGRRD--IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 314 K~l~-~G~~iG~~~~~~~--i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~ 387 (474)
|+++ +|+|+||++++++ +++.+..........+++.|+++++++.++|+...+ ++..++++++.+++.+.|+
T Consensus 253 K~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~-- 330 (416)
T 1bw0_A 253 KNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIG-- 330 (416)
T ss_dssp TTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred hhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9987 6999999988663 433332100011223678899999999999874321 2344445555555555554
Q ss_pred hhhcCCeeEE-eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC----CcceEEecCCcHHHHH
Q 011959 388 GKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQ 461 (474)
Q Consensus 388 ~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~~~~~~t~e~i~ 461 (474)
+++....+ +..|.++++.+..... ++......+.+.|+ ++||++.++. ...+|+++.+++++++
T Consensus 331 --~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~~~e~l~ 400 (416)
T 1bw0_A 331 --ECIGLAPTMPRGAMYLMSRIDLEKY--------RDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYR 400 (416)
T ss_dssp --TSTTEEECCCCBTTEEEEEECGGGB--------SSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHH
T ss_pred --hCCCCcccCCCeeEEEEEeCCHHHc--------CCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecCCHHHHH
Confidence 33222223 3347777777642100 00001246777775 8899998864 3467998889999999
Q ss_pred HHHHHHHHHHhh
Q 011959 462 HTITAAEKVLRQ 473 (474)
Q Consensus 462 ~~l~~l~~~~~~ 473 (474)
+++++|.+++++
T Consensus 401 ~~l~~l~~~l~~ 412 (416)
T 1bw0_A 401 EAVERIKAFCQR 412 (416)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=246.80 Aligned_cols=313 Identities=12% Similarity=0.073 Sum_probs=212.1
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar 176 (474)
.+++|||.+|. +++|+. |.+ ++ .....| +.....+|.+.++++++ +.++|++++|++++++.+++..
T Consensus 28 ~~~~i~l~~~~--~~~~~~-~~v--a~----~~~~~Y--~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~- 95 (356)
T 1fg7_A 28 GNGDVWLNANE--YPTAVE-FQL--TQ----QTLNRY--PECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAF- 95 (356)
T ss_dssp TTCSEECSSCC--CSSCCC-CCC--CC----CCTTSC--CCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH-
T ss_pred CCceEEeeCCC--CCCCCC-HhH--hh----hhhccC--CCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHH-
Confidence 35689999886 788874 555 22 222223 33224677777777775 4679999999999999999943
Q ss_pred hhcCC-cEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 177 AFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 177 ~~~~~-~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
..++ ++|++.+++||++...+. ..|..+..++.. .+. ..|++++++.++ ++++|+++++
T Consensus 96 -~~~g~d~Vl~~~p~~~~~~~~~~-~~g~~~~~v~~~--~~~------------~~d~~~l~~~i~----~~~~v~l~~p 155 (356)
T 1fg7_A 96 -CEPGKDAILYCPPTYGMYSVSAE-TIGVECRTVPTL--DNW------------QLDLQGISDKLD----GVKVVYVCSP 155 (356)
T ss_dssp -CCTTTCEEEECSSSCTHHHHHHH-HHTCEEEECCCC--TTS------------CCCHHHHHTSCT----TEEEEEEESS
T ss_pred -hCCCCCEEEEeCCChHHHHHHHH-HcCCEEEEeeCC--CCC------------CCCHHHHHHHhc----CCCEEEEeCC
Confidence 2234 789999999999665443 344433222111 110 017888887775 5677887777
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccc-cccCCCCceeehhhhcC-CCcceEEEEecHHHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIM 332 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~-~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i~ 332 (474)
+|++|.+.+ .+++++|.++|+ ||++||+||+|++| ........ +.++....+.|+||.+| +|+|+||++++++++
T Consensus 156 ~nptG~~~~-~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~ 233 (356)
T 1fg7_A 156 NNPTGQLIN-PQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVI 233 (356)
T ss_dssp CTTTCCCCC-HHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHH
T ss_pred CCCCCCCCC-HHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHH
Confidence 888898876 455999999999 99999999999987 32222221 22222233458999999 899999999999999
Q ss_pred HhhcCCCCcccccCCCCChHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHhhhcCC-eeEEeeeceeEEEEE
Q 011959 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---EPGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFF 408 (474)
Q Consensus 333 ~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~v~~~g~~~~i~~ 408 (474)
+.+.. ...+++.|+++++++.++|+... -++..++++++++++.+.|++ ++. ....++.|+++++.+
T Consensus 234 ~~l~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~ 304 (356)
T 1fg7_A 234 NLLMK-----VIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKE----IPCVEQVFDSETNYILARF 304 (356)
T ss_dssp HHHHH-----HSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH----STTEEEECCCSSSEEEEEE
T ss_pred HHHHH-----hcCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHh----CCCceEECCCCCeEEEEEC
Confidence 88863 12356789999999988886422 123344455555556555554 332 223456678887776
Q ss_pred ecCCCcCcccccccchHHHHHHHHHHHHCCeEecc-cC----CcceEEecCCcHHHHHHHHHHHHHH
Q 011959 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP-SQ----FEAGFTSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~-~~----~~~~~~~~~~t~e~i~~~l~~l~~~ 470 (474)
. + ..++.+.|.++||++.+ +. .+.+|+++. +++++++++++|+++
T Consensus 305 ~-~---------------~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~-~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 305 K-A---------------SSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG-TREESQRVIDALRAE 354 (356)
T ss_dssp T-T---------------HHHHHHHHHHTTEECEECTTSTTCTTEEEEECC-CHHHHHHHHHHHHTC
T ss_pred C-C---------------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC-CHHHHHHHHHHHHhh
Confidence 3 0 25688888999999998 42 235788765 689999999998753
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=247.95 Aligned_cols=338 Identities=10% Similarity=0.019 Sum_probs=223.2
Q ss_pred CCEEEeccCChhhccCCC--CCHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCCCCC---eEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGH--ADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVPSIE---MVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~-~~~~---~~~~~~~~la~~l~~~~~~~~---~v~~~~sGseA~ 168 (474)
|..+|||..|...+.-++ .++.|.+++.+..... ..|+ +..+++.++++++.... +.+ ++++++||++|+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~i~~t~g~~~al 115 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNF-RPEGHIRSIATAGGTGGI 115 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGG-CCSSEEEEEEESHHHHHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhccc-CccccccEEECCchHHHH
Confidence 345677776632111222 5778888877644321 1232 24567788888886665 345 999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC--CCC
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGE 246 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~ 246 (474)
..+++. ....++.|++.+++|+++...+ ...|..+..++.....+ ..|+++|++.++++ ++.
T Consensus 116 ~~~~~~--l~~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~-------------~~d~~~l~~~l~~~~~~~~ 179 (418)
T 3rq1_A 116 HHLIHN--YTEPGDEVLTADWYWGAYRVIC-SDTGRTLVTYSLFDEHN-------------NFNHEAFQNRVNELAAKQT 179 (418)
T ss_dssp HHHHHH--HSCTTCEEEEESSCCTHHHHHH-HHTTCEEEEECSBCTTS-------------SBCHHHHHHHHHHHHHHCS
T ss_pred HHHHHH--hcCCCCEEEECCCCchhHHHHH-HHcCCEEEEEeeeCCCC-------------CcCHHHHHHHHHHhhccCC
Confidence 999984 2345688999999998765433 33444332222110010 01799999988742 124
Q ss_pred eEEEEEccc-cCCCCcccCCHHHHHHHHHHHH------HhCCEEEEeccccCc-ccCC---CccccccCCCCc---ee--
Q 011959 247 IAAIILEPV-VGNSGFIAPKPDFLNAIRRITK------ENGALLIFDEVMTGF-RLAY---GGAQEYFGVTPD---LT-- 310 (474)
Q Consensus 247 ~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~------~~g~llI~DEv~~g~-r~g~---~~~~~~~g~~pd---i~-- 310 (474)
.++++++++ +|++|.+.+.++ +++|+++|+ +||++||+||+|.+| +.+. .+.....++.+| ++
T Consensus 180 ~~~vi~~~p~~NPtG~~~~~~~-l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 258 (418)
T 3rq1_A 180 NVVVIFNTPGNNPTGYSIEDKD-WDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCY 258 (418)
T ss_dssp EEEEEEECSSCTTTCCCCCHHH-HHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEE
Confidence 456777655 888998887666 999999999 899999999999988 6543 222333455566 22
Q ss_pred ehhhhcC-CCcceEEEEe---cHHHHHhhcCCCCccc-ccCCCCChHHHHHHHHHHHHhc------C--CCHHHHHHHHH
Q 011959 311 TLGKIIG-GGLPVGAYGG---RRDIMEMVAPAGPMYQ-AGTLSGNPLAMTAGIHTLKRLK------E--PGTYEYLNKIT 377 (474)
Q Consensus 311 t~sK~l~-~G~~iG~~~~---~~~i~~~~~~~~~~~~-~~t~~~~~~~~aaa~aal~~~~------~--~~~~~~~~~~~ 377 (474)
+|||+++ +|+|+||+++ ++++++.+........ ....+.+.+++.++.++|+... + ..+.++++++.
T Consensus 259 S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 338 (418)
T 3rq1_A 259 SLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRA 338 (418)
T ss_dssp ESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999998 7999999998 8999888763111111 1223578888888887774321 1 23455666777
Q ss_pred HHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecC-Cc
Q 011959 378 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HS 456 (474)
Q Consensus 378 ~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~-~t 456 (474)
+++.+.|+++ ++....+..|.++++.+. + ..++.+.|.++||++.|+. ..+|+++. ++
T Consensus 339 ~~l~~~L~~~----g~~~~~~~~~~~~~~~~~-------------~---~~~~~~~l~~~gi~v~~g~-~~iRis~~~~~ 397 (418)
T 3rq1_A 339 DIFKQEAAQV----GLPMLPYRGGFFITIPTD-------------S---ANAICEELKKEHIYVIALA-NGIRIAACGIP 397 (418)
T ss_dssp HHHHHHHHHH----TCCCCCCCSSSEEEEECT-------------T---HHHHHHHHHHTTEECEECS-SEEEEEGGGSC
T ss_pred HHHHHHHHhc----CCCCCCCCceEEEEcCCC-------------C---HHHHHHHHHhCCEEEecCC-CCeEEEEecCC
Confidence 7777777765 222222233444444431 1 2567788899999999874 56899876 69
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 011959 457 SDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 457 ~e~i~~~l~~l~~~~~~~ 474 (474)
++++++++++|+++++++
T Consensus 398 ~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 398 KCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp HHHHTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998763
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=244.58 Aligned_cols=328 Identities=13% Similarity=0.107 Sum_probs=217.9
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC----CCCC-CCHHHHHHHHHHHhh--CC--CCCeEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGA-PCLLENVLAEMVISA--VP--SIEMVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~~-~~~~~~~la~~l~~~--~~--~~~~v~~~~sGseA~ 168 (474)
|+++|||..+. ..++ .+|.+++++.+++++.. .++| +.....+|.+.++++ ++ ..++|++++|+++++
T Consensus 32 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al 108 (400)
T 3asa_A 32 QHTVINLSIGD--TTQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL 108 (400)
T ss_dssp TSCCEECSSCC--CCCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred CCceEeccCCC--CCCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence 67789998874 2233 68999999999887621 1223 233345677777766 33 467999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCC-CccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
+.+++ .+.++++|++.+++|+++... +...|.. +..++.....++. .|+ ++ . +++
T Consensus 109 ~~~~~---~~~~gd~Vl~~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~~~------------~~l---~~----~-~~~ 164 (400)
T 3asa_A 109 FRLLS---FFGPNQTVAIQDPSYPAYLDI-ARLTGAKEIIALPCLQENAFF------------PEF---PE----D-THI 164 (400)
T ss_dssp HHHHH---HHCSSCEEEEEESCCHHHHHH-HHHTTCSEEEEEECCGGGTTC------------CCC---CT----T-CCC
T ss_pred HHHHH---HcCCCCEEEECCCCcHHHHHH-HHHcCCcceEecccchhcCcc------------cCh---hh----c-cCc
Confidence 98765 345678999999999986543 3334443 2221111000110 021 11 1 256
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-CccccccCCCCc----eeehhhhcC-CCc
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPD----LTTLGKIIG-GGL 320 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~~pd----i~t~sK~l~-~G~ 320 (474)
++|++++++|++|.+.+ .+.+++|.++|++||++||+||+|++| +.+. ......++..+| +.++||.+| +|+
T Consensus 165 ~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~Gl 243 (400)
T 3asa_A 165 DILCLCSPNNPTGTVLN-KDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGI 243 (400)
T ss_dssp SEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTC
T ss_pred cEEEEeCCCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcch
Confidence 77777777788898865 555999999999999999999999988 5443 122222221133 458999998 899
Q ss_pred ceEEEEecHHH-------HHhhcCCCCcccccCC-CCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 321 PVGAYGGRRDI-------MEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 321 ~iG~~~~~~~i-------~~~~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
|+||+++++++ ++.+.. .....++ +.|++++.++.++|+....++..++++++++++.+.|++. +
T Consensus 244 riG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----g 316 (400)
T 3asa_A 244 RLGWTVIPQELTYADGHFVIQDWE---RFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT----G 316 (400)
T ss_dssp CCEEEECCTTCBCTTSCBHHHHHH---HHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT----T
T ss_pred heeEEeeChhhccchhhhHHHHHH---HHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC----C
Confidence 99999999887 554431 1122234 5789999999999986533667888888888888888764 3
Q ss_pred CeeEEeeeceeEEEE-EecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC------CcceEEecCCcHHHHHHHH
Q 011959 393 HAICGGYISGMFGFF-FTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTI 464 (474)
Q Consensus 393 ~~~~v~~~g~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l 464 (474)
+....+..|+++++. +... . + ..++.+.|++ +||++.++. ...+|+++..+++++++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~-~---------~---~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l 383 (400)
T 3asa_A 317 FEVFGGEHAPYLWVKPTQAN-I---------S---DRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAAC 383 (400)
T ss_dssp CEEEECSSSSEEEEECCCTT-C---------C---TTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHH
T ss_pred CeeeCCCCceEEEEeccCCC-C---------C---HHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHH
Confidence 332222346778877 5321 0 0 1246667765 599998763 3468898888999999999
Q ss_pred HHHHHHHhh
Q 011959 465 TAAEKVLRQ 473 (474)
Q Consensus 465 ~~l~~~~~~ 473 (474)
++|++++++
T Consensus 384 ~~l~~~~~~ 392 (400)
T 3asa_A 384 ERLQMAPAL 392 (400)
T ss_dssp HHHHC----
T ss_pred HHHHHHHHh
Confidence 999988764
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-29 Score=248.95 Aligned_cols=339 Identities=14% Similarity=0.054 Sum_probs=219.5
Q ss_pred CCCEEEeccCChhhccCCC--CCHHHHHHHHH-HHHhcC--CCC---CCCHHHHHHHHHHHhhCC---CCCeEEE--eCC
Q 011959 97 DGNEYIDYVGSWGPAIIGH--ADDQVLAALGE-TMKKGT--SFG---APCLLENVLAEMVISAVP---SIEMVRF--VNS 163 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~--~~p~v~~a~~~-~~~~~~--~~~---~~~~~~~~la~~l~~~~~---~~~~v~~--~~s 163 (474)
+|+.+|||..|...++.|+ .+|.+.+++.+ .+.... .|+ +..+++.++++++....+ ..++|++ ++|
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g 106 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS 106 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccc
Confidence 3567889988854333443 46899999998 775422 222 234566677777754432 3679999 999
Q ss_pred HHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC
Q 011959 164 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (474)
Q Consensus 164 GseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (474)
|++|++.++++.+.+.++++|++.+++|+++...+ ...|..+..++.....+. ..|+++|++.++++
T Consensus 107 ~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~~ 173 (412)
T 1yaa_A 107 GTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIF-ENQGLKTATYPYWANETK------------SLDLNGFLNAIQKA 173 (412)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHH-HTTTCCEEEEECEETTTT------------EECHHHHHHHHHHS
T ss_pred hHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHH-HHcCceEEEEeeecCCCC------------ccCHHHHHHHHHhC
Confidence 99999999876666667789999999999965433 223332221111000000 01799999998764
Q ss_pred CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC---CCccc-cccCCCC---c---eeeh
Q 011959 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA---YGGAQ-EYFGVTP---D---LTTL 312 (474)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g---~~~~~-~~~g~~p---d---i~t~ 312 (474)
+...+++++..++|++|.+.+.+ .+++|.++|++||++||+||+|.+| +.+ ..... ...+..+ + +.++
T Consensus 174 ~~~~~~~~~~~p~nPtG~~~~~~-~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 252 (412)
T 1yaa_A 174 PEGSIFVLHSCAHNPTGLDPTSE-QWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSF 252 (412)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHH-HHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCCCCCCHH-HHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEecc
Confidence 33345666577777888776644 4999999999999999999999988 443 22122 1111223 2 3379
Q ss_pred hhhcCC-CcceEEEE--e-----cHH----HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc------C--CCHHHH
Q 011959 313 GKIIGG-GLPVGAYG--G-----RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK------E--PGTYEY 372 (474)
Q Consensus 313 sK~l~~-G~~iG~~~--~-----~~~----i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------~--~~~~~~ 372 (474)
||.++. |+|+||++ + +++ +++.+.. .....+.+.|++++.++.++|+... + ++..++
T Consensus 253 sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 329 (412)
T 1yaa_A 253 AKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAK---IIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSR 329 (412)
T ss_dssp TTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHH---HHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999996 99999998 7 666 7776652 2223344558899999988887542 1 455666
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe
Q 011959 373 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS 452 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~ 452 (474)
++++++++.+.|+++....++....+..|.++++.+. ...+.+.+.++||++.+ .+|++
T Consensus 330 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gi~v~~----~~Ris 388 (412)
T 1yaa_A 330 ITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT-----------------PQMVKRLEETHAVYLVA----SGRAS 388 (412)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECCT----TSEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCC-----------------HHHHHHHHHhCCEEecc----CcEEE
Confidence 7777777777777653110121111223333332210 13454455578999987 46887
Q ss_pred cCC-cHHHHHHHHHHHHHHHhh
Q 011959 453 LAH-SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 453 ~~~-t~e~i~~~l~~l~~~~~~ 473 (474)
+.. +++++++++++|+++++.
T Consensus 389 ~~~~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 389 IAGLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp GGGCCTTTHHHHHHHHHHHHHH
T ss_pred EccCCHhHHHHHHHHHHHHHHh
Confidence 654 999999999999998865
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=233.31 Aligned_cols=314 Identities=13% Similarity=0.120 Sum_probs=219.6
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHh
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~a 175 (474)
+.+++|||.++. +++| .+|.+.+++.++++....| +.....+|.+.++++++ ..+++++++|+++++..+++.
T Consensus 14 ~~~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~- 87 (337)
T 3p1t_A 14 AAAQAVCLAFNE--NPEA-VEPRVQAAIAAAAARINRY--PFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAE- 87 (337)
T ss_dssp CCCCCEECSSCC--CCSC-CCHHHHHHHHHHGGGTTSC--CTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHH-
T ss_pred CCCCceEeeCCC--CCCC-CCHHHHHHHHHhhhhhccC--CCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHh-
Confidence 456789999886 6777 6899999999987764433 56677888888888886 457999999999999999985
Q ss_pred HhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
+ +++.|++.+++|+++.. .+...|..+..++.....+ -|+++|++. .++++++++.+
T Consensus 88 --~-~gd~vl~~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~-----~~~~~v~i~~p 144 (337)
T 3p1t_A 88 --F-SSMRFVTAWPGFDGYRA-RIAVSGLRHFEIGLTDDLL--------------LDPNDLAQV-----SRDDCVVLANP 144 (337)
T ss_dssp --S-TTSEEEEESSSCSHHHH-HHTTSCCEEEEECBCTTSS--------------BCHHHHTTC-----CTTEEEEEESS
T ss_pred --c-CCCeEEEeCCCcHHHHH-HHHHcCCEEEEecCCCCCC--------------CCHHHHHhh-----cCCCEEEEeCC
Confidence 4 67889999999987543 2323333222111110001 177877654 14577777777
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcC-CCcceEEEEecHHHHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 333 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i~~ 333 (474)
+|++|.+.+ ++++.++|+++++ +|+||+|.+| ..+.. .....+....+.++||.++ +|+|+||+++++++++
T Consensus 145 ~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~-~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~ 218 (337)
T 3p1t_A 145 SNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRAR-GLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIA 218 (337)
T ss_dssp CTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSS-CCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHH
T ss_pred CCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhcccccc-ccccCCCEEEEeeCchhccCcchheEEEEeCHHHHH
Confidence 889999999 8889999999997 5569999877 43321 1111122222448999998 8999999999999999
Q ss_pred hhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCC
Q 011959 334 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (474)
Q Consensus 334 ~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (474)
.+... ..+++.+++++.++.++|+.... ++.++++.++++++.+.|+++ ++. ..++.|.++++...+.
T Consensus 219 ~l~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~~~~~~~~~~- 287 (337)
T 3p1t_A 219 AMKRK-----QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL----GYR-VASSEANFVLVENAAG- 287 (337)
T ss_dssp HHHTT-----SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----TCC-BCCCSSSEEEEECTTT-
T ss_pred HHHhh-----cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----cCE-ECCCCCeEEEEEcCCH-
Confidence 88742 23467788888888888764221 334455555666666666554 322 2345677777654321
Q ss_pred CcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
..+.+.|.++||++.++. ...+|+++. +++++++++++|+++.+
T Consensus 288 ---------------~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 288 ---------------ERTLRFLRERGIQVKDAGQFGLHHHIRISIG-REEDNDRLLAALAEYSD 335 (337)
T ss_dssp ---------------HHHHHHHHHTTEECEEGGGGTCCSEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred ---------------HHHHHHHHHCCeEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHhh
Confidence 356778889999998874 246788866 89999999999998764
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-27 Score=237.56 Aligned_cols=300 Identities=13% Similarity=0.116 Sum_probs=204.9
Q ss_pred CCHHHHHHHHHHHhhCC-C---------CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCC
Q 011959 137 PCLLENVLAEMVISAVP-S---------IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~-~---------~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (474)
..+++.++++++.+.++ . .++|++++|+++|+..+++.. ...++.|++.+++|+++... +...|..+
T Consensus 80 ~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~ 156 (425)
T 2r2n_A 80 IPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI--INPGDNVLLDEPAYSGTLQS-LHPLGCNI 156 (425)
T ss_dssp CHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSCCHHHHHH-HGGGTCEE
T ss_pred CHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh--CCCCCEEEEeCCCcHHHHHH-HHHcCCEE
Confidence 35677788888776554 2 258999999999999999952 33467899999999985443 33334322
Q ss_pred ccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC---------CCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHH
Q 011959 207 ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---------GEIAAIILEP-VVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 207 ~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~---------~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
..++.. ..+ .|+++|++.+++++ +++++|+++| ++|++|.+.+ .+.+++|.++|
T Consensus 157 ~~v~~~-~~~--------------~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~-~~~l~~l~~~a 220 (425)
T 2r2n_A 157 INVASD-ESG--------------IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLT-SERKKEIYELA 220 (425)
T ss_dssp EEECEE-TTE--------------ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCC-HHHHHHHHHHH
T ss_pred EEeCcC-CCC--------------CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCC-HHHHHHHHHHH
Confidence 221110 001 27999999997422 3567887765 5667888765 45599999999
Q ss_pred HHhCCEEEEeccccCc-ccCCC-cccccc---CCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCCh
Q 011959 277 KENGALLIFDEVMTGF-RLAYG-GAQEYF---GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351 (474)
Q Consensus 277 ~~~g~llI~DEv~~g~-r~g~~-~~~~~~---g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~ 351 (474)
++||++||+||+|++| +.+.. .....+ +....+.+|||++++|+|+||+++++++++.+. ......+++.|+
T Consensus 221 ~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~---~~~~~~~~~~~~ 297 (425)
T 2r2n_A 221 RKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVI---LHIQVSTLHPST 297 (425)
T ss_dssp HHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHH---HHHHTTTCSSCH
T ss_pred HHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHH---HHHHHhcCCCCH
Confidence 9999999999999988 55432 111122 222334589999999999999999999988886 233445678899
Q ss_pred HHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHHHhhhcCCee-EEeeeceeEEEEEecCCCcCcccccccc
Q 011959 352 LAMTAGIHTLKRLKE-------PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSE 423 (474)
Q Consensus 352 ~~~aaa~aal~~~~~-------~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~~~i~~~~~~~~~~~~~~~~~ 423 (474)
+++.++.++|+.+.+ +.+.++++++.+++.+.|++... ++.. ..+..|+++++.+.... +
T Consensus 298 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~p~~g~~~~~~~~~~~----------~ 365 (425)
T 2r2n_A 298 FNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLT--GLAEWHVPAAGMFLWIKVKGIN----------D 365 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--SSEEECCCSBSSEEEEEETTCS----------C
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCeEEeCCCceEEEEEEeCCCC----------C
Confidence 999999999986421 22334444555555555554311 2221 23456778888874310 0
Q ss_pred hHHHHH-HHHHHHHCCeEecccC---------CcceEEecC-CcHHHHHHHHHHHHHHHhh
Q 011959 424 TTKFAR-FYRGMLEEGVYFAPSQ---------FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 424 ~~~~~~-~~~~l~~~Gv~v~~~~---------~~~~~~~~~-~t~e~i~~~l~~l~~~~~~ 473 (474)
. .. +.+.|.++||.+.|+. ...+|+++. .+++++++++++|++++++
T Consensus 366 ~---~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 366 V---KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp C---HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 0 23 5677889999998752 245788876 7999999999999999865
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=241.63 Aligned_cols=335 Identities=15% Similarity=0.107 Sum_probs=216.0
Q ss_pred CEEEeccCChhhccCCCC--CHHHHHHHHHHHHhc------CCCCCC---CHHHHHHHHHHHhhCC---CCCeEEEeCCH
Q 011959 99 NEYIDYVGSWGPAIIGHA--DDQVLAALGETMKKG------TSFGAP---CLLENVLAEMVISAVP---SIEMVRFVNSG 164 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~------~~~~~~---~~~~~~la~~l~~~~~---~~~~v~~~~sG 164 (474)
..++||..| .+.... .+.+.+++.+.+.+. ..|+.+ .++++++++++.+.++ ..++|++|+||
T Consensus 31 ~~~i~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~ 107 (417)
T 3g7q_A 31 PGAIMLGGG---NPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGS 107 (417)
T ss_dssp -CCEECSCC---CCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCH
T ss_pred CCceEecCc---CCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCc
Confidence 457788777 322211 134455555544332 133322 3566677777765433 56899999999
Q ss_pred HHHHHHHHHHhHhhcCCc-----EEEEE-eCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC------C
Q 011959 165 TEACMGVLRLARAFTGRE-----RIIKF-EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------D 232 (474)
Q Consensus 165 seA~~~al~~ar~~~~~~-----~ii~~-~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~------d 232 (474)
++|++.+++... ..++ +||+. +++||++.......... ......+..++.+ |
T Consensus 108 t~al~~~~~~l~--~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~d 171 (417)
T 3g7q_A 108 QSAFFYLFNLFA--GRRADGSTKKVLFPLAPEYIGYADSGLEDDLF--------------VSARPNIELLPEGQFKYHVD 171 (417)
T ss_dssp HHHHHHHHHHHS--BC----CCBEEEESSCCCHHHHHC-----CCE--------------EECCCEEEEEGGGEEEEECC
T ss_pred HHHHHHHHHHHc--CCCccCCcceEEEeCCCccccchhhccchhhh--------------ccccCcccccCCcccccccC
Confidence 999999999532 2222 78876 88998865433211000 0000112222221 6
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCc-c--ccccCCCCce
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG-A--QEYFGVTPDL 309 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~-~--~~~~g~~pdi 309 (474)
+++|+ +. +++++|+++.++|++|.+.+.++ +++|.++|++||++||+||+|..+..+..+ . ....+....+
T Consensus 172 ~~~l~--~~---~~~~~v~~~~p~NptG~~~~~~~-~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (417)
T 3g7q_A 172 FEHLH--IG---EETGMICVSRPTNPTGNVITDEE-LMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILC 245 (417)
T ss_dssp GGGCC--CC---TTEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEE
T ss_pred HHHhc--cc---cCceEEEECCCCCCCCCccCHHH-HHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEE
Confidence 77776 32 36788888877888998887666 999999999999999999999644211111 0 0112222335
Q ss_pred eehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHH
Q 011959 310 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-----PGTYEYLNKITGELTQGI 384 (474)
Q Consensus 310 ~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L 384 (474)
.+|||...+|+|+||+++++++++.+. ...+..+++.++++++++.+.|+...- +.+.++++++.+.+.+.|
T Consensus 246 ~s~sK~~~~G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (417)
T 3g7q_A 246 MSLSKLGLPGSRCGIIIANDKTITAIA---NMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAII 322 (417)
T ss_dssp EESGGGTCTTSCCEEEECCHHHHHHHH---HHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred EechhccCCCcceEEEEeCHHHHHHHH---HhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689996447999999999999998887 344556778899999999888864221 124455666777777777
Q ss_pred HHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-------------CcceEE
Q 011959 385 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------------FEAGFT 451 (474)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------------~~~~~~ 451 (474)
.+.....++....+..|.++++.+..... ...++.+.|.++||++.++. ...+|+
T Consensus 323 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~~------------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRi 390 (417)
T 3g7q_A 323 RRYLSEERCLIHKPEGAIFLWLWFKDLPI------------TTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRM 390 (417)
T ss_dssp HHHCCTTTCEEECCCBSSEEEEECTTCSS------------CHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEE
T ss_pred HHhcccCCceeeCCCcceEEEEEcCCCCC------------CHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEE
Confidence 76554444444445668888887743110 12567888899999998753 235788
Q ss_pred ecCCcHHHHHHHHHHHHHHHhh
Q 011959 452 SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 452 ~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++..++++|++++++|.+++++
T Consensus 391 s~~~~~~~i~~~~~~l~~~l~~ 412 (417)
T 3g7q_A 391 NYVPEPDKIEAGVKILAEEIER 412 (417)
T ss_dssp ESCSCHHHHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHHHHHH
Confidence 8888999999999999998865
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=241.37 Aligned_cols=324 Identities=13% Similarity=0.131 Sum_probs=223.8
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--------CC-CCCCHHHHHHHHH-HHhhCCCCCeEEEeCCHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--------SF-GAPCLLENVLAEM-VISAVPSIEMVRFVNSGTEACM 169 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--------~~-~~~~~~~~~la~~-l~~~~~~~~~v~~~~sGseA~~ 169 (474)
.|+|+. .+.++.+|++++++.+++.... .+ .++.+...++.++ ++++++.. .+++++||++|++
T Consensus 10 i~ld~~-----~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~ 83 (371)
T 2e7j_A 10 INIDPL-----QTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKF 83 (371)
T ss_dssp EECCHH-----HHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHH
T ss_pred EEeccc-----ccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHH
Confidence 466653 2356679999999999886532 11 1245567889999 99988533 9999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC--CCe
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK--GEI 247 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~--~~~ 247 (474)
.+++.+ ..++++|++.+++||+.... +...|..+..++.+..... .-|+++|++.++++. +++
T Consensus 84 ~~~~~~--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~~~~~~~~ 148 (371)
T 2e7j_A 84 AVMHSL--AKKDAWVVMDENCHYSSYVA-AERAGLNIALVPKTDYPDY------------AITPENFAQTIEETKKRGEV 148 (371)
T ss_dssp HHHHHH--CCTTCEEEEETTCCHHHHHH-HHHTTCEEEEECCCCTTTC------------CCCHHHHHHHHHHHTTTSCE
T ss_pred HHHHHH--hCCCCEEEEccCcchHHHHH-HHHcCCeEEEeecccCCCC------------CcCHHHHHHHHHhhcccCCe
Confidence 999964 44567899999999886555 4444443322220011000 008999999987431 368
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEE
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY 325 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~ 325 (474)
++|++++++|++|.+.+ +++|.++|++||++||+||+|+.+... .....++ +|++ +++|++++|.|+|++
T Consensus 149 ~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~~--~~~~~~~--~di~~~s~sK~~~~~~~~G~~ 220 (371)
T 2e7j_A 149 VLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIGRMP--VSLKEIG--ADFIVGSGHKSMAASGPIGVM 220 (371)
T ss_dssp EEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBTTBC--CCHHHHT--CSEEEEEHHHHSSCCSSCEEE
T ss_pred EEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccCCCC--CChhhcC--CCEEEecCCcCCCCCCCcEEE
Confidence 89999999999999998 899999999999999999999754221 1222333 5655 689999987899999
Q ss_pred EecHHHHHh-hcCCCCccccc-----CCCCChHHHHHHHHHHHHhcCCCHHHHH--HHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 326 GGRRDIMEM-VAPAGPMYQAG-----TLSGNPLAMTAGIHTLKRLKEPGTYEYL--NKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 326 ~~~~~i~~~-~~~~~~~~~~~-----t~~~~~~~~aaa~aal~~~~~~~~~~~~--~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
++++++++. +...... ... +++.++..++++.++++.+.+ .+.+++ +++.+++.+.|+++ ++....
T Consensus 221 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~----~~~~~~ 294 (371)
T 2e7j_A 221 GMKEEWAEIVLRRSEKY-KNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL----GIKQLG 294 (371)
T ss_dssp EECTTTTTTTTCBCSSC-TTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT----TCEEES
T ss_pred EEechhhhhhccccccC-cccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc----CcEEec
Confidence 999998877 6532211 112 456788888888888887765 666777 88888888888765 322211
Q ss_pred ee--eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc-------C--CcceE-EecC---CcHHHHHH
Q 011959 398 GY--ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-------Q--FEAGF-TSLA---HSSDDIQH 462 (474)
Q Consensus 398 ~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------~--~~~~~-~~~~---~t~e~i~~ 462 (474)
+. .+.++++.+. ...++.+.|.++||.+.+. + ...+| +++. +|++++++
T Consensus 295 ~~~~~~~~~~~~~~----------------~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~ 358 (371)
T 2e7j_A 295 DNPHNHDLMFFHAE----------------VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDY 358 (371)
T ss_dssp SSSCCSSEEEEECH----------------HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHH
T ss_pred CCCccCceEEEECC----------------CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHH
Confidence 21 4667777652 1256788888899998761 1 23457 6544 79999999
Q ss_pred HHHHHHHHHhhC
Q 011959 463 TITAAEKVLRQI 474 (474)
Q Consensus 463 ~l~~l~~~~~~~ 474 (474)
++++|+++++++
T Consensus 359 ~~~~l~~~~~~~ 370 (371)
T 2e7j_A 359 VLNAFKEIIEKY 370 (371)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=236.94 Aligned_cols=315 Identities=14% Similarity=0.059 Sum_probs=213.7
Q ss_pred CCHHHHHHHHHHHHhcCC-C-C--CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh-----------c
Q 011959 116 ADDQVLAALGETMKKGTS-F-G--APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-----------T 179 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~-~-~--~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~-----------~ 179 (474)
.+|++.+++.+++.+... + . ...+...+++++++++++ ..+++++++||++|++.+++.++.. .
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~ 121 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKN 121 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCC
Confidence 578999999998875321 1 1 124567789999999987 5678999999999999999976543 2
Q ss_pred CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCC
Q 011959 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (474)
+++.|++.+++|+++. ..+...|..+..++.... + .-|+++|++.++++ ++++|+++++++++
T Consensus 122 ~gd~vl~~~~~~~~~~-~~~~~~g~~~~~v~~~~~-~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~npt 184 (397)
T 3f9t_A 122 EHPKIIVPITAHFSFE-KGREMMDLEYIYAPIKED-Y-------------TIDEKFVKDAVEDY--DVDGIIGIAGTTEL 184 (397)
T ss_dssp SSCEEEEETTCCTHHH-HHHHHHTCEEEEECBCTT-S-------------SBCHHHHHHHHHHS--CCCEEEEEBSCTTT
T ss_pred CCeEEEECCcchhHHH-HHHHHcCceeEEEeeCCC-C-------------cCCHHHHHHHHhhc--CCeEEEEECCCCCC
Confidence 3678888887777743 334444443222111100 0 01899999999853 56788888888889
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c--cCC---------CccccccCCCCceeehhhhcCCCcceEEEEe
Q 011959 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAY---------GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 327 (474)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r--~g~---------~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~ 327 (474)
|.+.+ +++|.++|++||++||+||+|+++ . .+. .+.... ++...+.+++|.+++|+++|++++
T Consensus 185 G~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~ 259 (397)
T 3f9t_A 185 GTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILF 259 (397)
T ss_dssp CCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEE
T ss_pred CCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEE
Confidence 99988 999999999999999999999865 2 221 223333 555556689999888889999977
Q ss_pred cHH-HHHhhcCCCCccc--------ccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe
Q 011959 328 RRD-IMEMVAPAGPMYQ--------AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (474)
Q Consensus 328 ~~~-i~~~~~~~~~~~~--------~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (474)
+++ +.+.+....+... +++.+.+++++.++++.+....-++..++++++.+++.+.|++. .+... ..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~ 335 (397)
T 3f9t_A 260 KDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN--NFKPV--IE 335 (397)
T ss_dssp SSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCBS--SC
T ss_pred eCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEE--cC
Confidence 554 5554432111111 12222355666666665543222567777888888888888876 22211 22
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-cceEEec--CCcHHHHHHHHHHHHHHHh
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTSL--AHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~~--~~t~e~i~~~l~~l~~~~~ 472 (474)
+.+.++++.+.+ ...+.+.|.++||++.++.. ..+|+++ .+|++++++++++|+++++
T Consensus 336 ~~~~~~~~~~~~----------------~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 336 PILNIVAIEDED----------------YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp CSSSEEEEECTT----------------HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred CCccEEEEEeCC----------------HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 455666655421 25788999999999988763 5677764 4699999999999999875
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=242.09 Aligned_cols=303 Identities=17% Similarity=0.137 Sum_probs=204.1
Q ss_pred CHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHhHhhcCC-c--------------EEEEE-eCCCCCCchhH
Q 011959 138 CLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGR-E--------------RIIKF-EGCYHGHADPF 198 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~al~~ar~~~~~-~--------------~ii~~-~~~yhg~~~~~ 198 (474)
.+++.++++++.+.++ +.++|+||+||++|++.+++. +.++ + +||+. +++|+++....
T Consensus 86 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~---l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~ 162 (444)
T 3if2_A 86 SAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNL---FGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVH 162 (444)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHH---SSEEEECC-------CEEEEEEEESSSSCCGGGTTCC
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHH---HhCCCccccccccccccccceEEEeCCCCccchhhcc
Confidence 4677778877766543 568999999999999999995 3332 2 46664 78888754321
Q ss_pred HHhcCCCCccCCCCCCCCCCCCCCCceEEccC----------CCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHH
Q 011959 199 LVKAGSGVATLGLPDSPGVPKGATYETLTAPF----------NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 268 (474)
Q Consensus 199 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----------~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (474)
... .........++.++. -|+++|++.+++..+++++|+++.++|++|.+.+.++
T Consensus 163 ~~~--------------~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~- 227 (444)
T 3if2_A 163 VEG--------------QHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEE- 227 (444)
T ss_dssp SSS--------------CCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHH-
T ss_pred ccc--------------chhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHH-
Confidence 100 000001112232331 2899999875321236788888766788998876555
Q ss_pred HHHHHHHHHHhCCEEEEeccccCcccCCCc---cccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCccccc
Q 011959 269 LNAIRRITKENGALLIFDEVMTGFRLAYGG---AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG 345 (474)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~r~g~~~---~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~ 345 (474)
+++|.++|++||++||+||+|..+..+..+ .....+...++.++||.+.+|+|+||+++++++++.+. ...+..
T Consensus 228 l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~---~~~~~~ 304 (444)
T 3if2_A 228 MAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVS---AMNAVV 304 (444)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHH---HHHHhc
Confidence 999999999999999999999643111111 01112333446689998557999999999999998886 333445
Q ss_pred CCCCChHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccc
Q 011959 346 TLSGNPLAMTAGIHTLKRLKE-----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (474)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (474)
+++.++++++++.+.++.... +.+.++++++.+.+.+.|.+.+...++....+..|.++++.+.....
T Consensus 305 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~------- 377 (444)
T 3if2_A 305 NLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPI------- 377 (444)
T ss_dssp HSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSS-------
T ss_pred cCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCC-------
Confidence 678899999998888864221 12455666677777777776544434333345667888888743111
Q ss_pred ccchHHHHHHHHHHHHCCeEecccCC--------------cceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 421 KSETTKFARFYRGMLEEGVYFAPSQF--------------EAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~v~~~~~--------------~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
....+.+.|.++||++.++.. ..+|+++..++++|++++++|.+++++
T Consensus 378 -----~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~ 439 (444)
T 3if2_A 378 -----STLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVRE 439 (444)
T ss_dssp -----CHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 125678888999999987632 257888878999999999999998865
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-26 Score=228.53 Aligned_cols=328 Identities=15% Similarity=0.132 Sum_probs=222.6
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---CCC------CCCHHHHHHHHHHHhhCCC--CCeEEEeCCHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFG------APCLLENVLAEMVISAVPS--IEMVRFVNSGT 165 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~------~~~~~~~~la~~l~~~~~~--~~~v~~~~sGs 165 (474)
+|+.+++|..+. .++.+|++++++.+++.+.. +.+ .+.....++.+.++++++. .+++++++||+
T Consensus 20 ~g~~~i~l~~~~----~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 95 (406)
T 1kmj_A 20 NGLPLAYLDSAA----SAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTT 95 (406)
T ss_dssp TTEECEECCTTT----CCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCc----cCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChh
Confidence 455544444331 14678999999999998742 111 1245567899999999864 57999999999
Q ss_pred HHHHHHHHHhHh--hcCCcEEEEEeCCCCCCchhH---HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHH
Q 011959 166 EACMGVLRLARA--FTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240 (474)
Q Consensus 166 eA~~~al~~ar~--~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l 240 (474)
+|++.+++.++. ..++++|++.+++||+..... ....|..+...+... .+ ..|+++|++.+
T Consensus 96 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~-------------~~d~~~l~~~l 161 (406)
T 1kmj_A 96 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP-DG-------------TLQLETLPTLF 161 (406)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT-TS-------------CBCGGGHHHHC
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCC-CC-------------CcCHHHHHHHh
Confidence 999999997532 456789999999999876443 222344332211110 00 01788999888
Q ss_pred hcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCC
Q 011959 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG 318 (474)
Q Consensus 241 ~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~ 318 (474)
++ ++++|++++++|++|.+.+ +++|.++|++||++||+||+|+.... ...... ..+|++ +++|.++.
T Consensus 162 ~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~g~~--~~~~~~--~~~d~~~~s~~K~~g~ 230 (406)
T 1kmj_A 162 DE---KTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAVMHH--PVDVQA--LDCDFYVFSGHKLYGP 230 (406)
T ss_dssp CT---TEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTS--CCCHHH--HTCSEEEEEGGGTTSC
T ss_pred cc---CCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhcCCC--CCcccc--cCCCEEEEEchhccCC
Confidence 63 6899999999999999998 99999999999999999999974321 111222 246765 69999962
Q ss_pred -CcceEEEEecHHHHHhhcCCCCcc------------------cccCCCCChHHHHHHH-HHHHHhcC---CCHHHHHHH
Q 011959 319 -GLPVGAYGGRRDIMEMVAPAGPMY------------------QAGTLSGNPLAMTAGI-HTLKRLKE---PGTYEYLNK 375 (474)
Q Consensus 319 -G~~iG~~~~~~~i~~~~~~~~~~~------------------~~~t~~~~~~~~aaa~-aal~~~~~---~~~~~~~~~ 375 (474)
| +|++++++++++.+.+..... ...+.+.+++.+.+++ ++++.+.+ +.+.+++++
T Consensus 231 ~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 308 (406)
T 1kmj_A 231 TG--IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQN 308 (406)
T ss_dssp TT--CEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CC--cEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4 899999999998886421100 0112345666666666 77877653 355666666
Q ss_pred HHHHHHHHHHHHhhhcCCeeEEee--eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--------
Q 011959 376 ITGELTQGIIDAGKKAGHAICGGY--ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------- 445 (474)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------- 445 (474)
+.+++.+.|+++ +....... .|.++.+.+... + ..++.+.|.++||.+.++.
T Consensus 309 ~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~ 370 (406)
T 1kmj_A 309 LMHYALSQLESV----PDLTLYGPQNRLGVIAFNLGKH-----------H---AYDVGSFLDNYGIAVRTGHHCAMPLMA 370 (406)
T ss_dssp HHHHHHHHHTTS----TTEEEESCTTCCSEEEEEETTC-----------C---HHHHHHHHHHTTEECEEECTTCHHHHH
T ss_pred HHHHHHHHHhcC----CCeEEecCCCcCCEEEEEECCC-----------C---HHHHHHHHhhCCcEEEeccccchHHHH
Confidence 777777666543 21222333 577777766310 1 2467788899999998753
Q ss_pred ----CcceEEecC--CcHHHHHHHHHHHHHHHhh
Q 011959 446 ----FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 ----~~~~~~~~~--~t~e~i~~~l~~l~~~~~~ 473 (474)
...+|+++. +|++++++++++|+++++.
T Consensus 371 ~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 371 YYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 404 (406)
T ss_dssp HTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 245787654 4999999999999998764
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-28 Score=245.52 Aligned_cols=338 Identities=12% Similarity=0.071 Sum_probs=221.7
Q ss_pred EEeccCChhhccCCCCCHHHHHHHH--HHHHhc---CCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHH--HHH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALG--ETMKKG---TSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACM--GVL 172 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~--~~~~~~---~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~--~al 172 (474)
.|||..|.....+...+|.+.+++. +.+..+ ..|..+.....+|.+.++++++ ..++|++++|+++++. .++
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~ 106 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLT 106 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHH
Confidence 4677766432222334567877775 433322 2231233334677777777776 5679999999999997 777
Q ss_pred HHhHhh-cC--------CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC
Q 011959 173 RLARAF-TG--------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (474)
Q Consensus 173 ~~ar~~-~~--------~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (474)
+..... .+ ++.|++.+++|+++...+ ...|..+..++... .+ -|+++|++.+++.
T Consensus 107 ~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~-~~~g~~~~~v~~~~-~g--------------~d~~~l~~~l~~~ 170 (423)
T 3ez1_A 107 FALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLL-QTLGFELLTVDMQS-DG--------------PDVDAVERLAGTD 170 (423)
T ss_dssp HHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHH-HHHTCEEEEEEEET-TE--------------ECHHHHHHHHHSC
T ss_pred HHHhccCCCccccccCCCCEEEEcCCCcHHHHHHH-HHcCCEEEeccCCC-CC--------------CCHHHHHHHHhhC
Confidence 743221 23 589999999998865443 33343222111100 01 1899999999632
Q ss_pred CCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHH-HHhCCEEEEeccccCc-ccC--CCcccc---------ccCCCCce
Q 011959 244 KGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRIT-KENGALLIFDEVMTGF-RLA--YGGAQE---------YFGVTPDL 309 (474)
Q Consensus 244 ~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~-~~~g~llI~DEv~~g~-r~g--~~~~~~---------~~g~~pdi 309 (474)
+++++|+++| ++|++|.+.+.++ +++|.++| ++||++||+||+|..+ ..+ ...... ..+....+
T Consensus 171 -~~~~~v~~~~~~~NPtG~~~~~~~-l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (423)
T 3ez1_A 171 -PSVKGILFVPTYSNPGGETISLEK-ARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248 (423)
T ss_dssp -TTEEEEEECSSSCTTTCCCCCHHH-HHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE
T ss_pred -CCceEEEECCCCCCCCCcCCCHHH-HHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEE
Confidence 3688888876 4566888887655 99999999 9999999999999854 222 111111 12222335
Q ss_pred eehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-hcC-----CCHHHHHHHHHHHHHHH
Q 011959 310 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKE-----PGTYEYLNKITGELTQG 383 (474)
Q Consensus 310 ~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-~~~-----~~~~~~~~~~~~~l~~~ 383 (474)
.+|||.+.+|+|+||+++++++++.+. ......+++.+++++.++.++|+. ... ....+.++++.+.+.+.
T Consensus 249 ~S~sK~~~~G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (423)
T 3ez1_A 249 ASTSKITFAGAGLGFVASSEDNIRWLS---KYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEV 325 (423)
T ss_dssp EESTTTSCSSSSCEEEEECHHHHHHHH---HHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCchhhccCCcceEEEEeCHHHHHHHH---HHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999778999999999999998886 344556788899999999988875 111 22333444455555556
Q ss_pred HHHHhhhcC--CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------CcceEE
Q 011959 384 IIDAGKKAG--HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFT 451 (474)
Q Consensus 384 L~~~~~~~~--~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------~~~~~~ 451 (474)
|.+.+...+ +....+..|+++++.+... ....+.+.|.++||++.+++ ...+|+
T Consensus 326 l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~--------------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRi 391 (423)
T 3ez1_A 326 LRAELGEGGEYATWTLPKGGYFISLDTAEP--------------VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRL 391 (423)
T ss_dssp HHHHHTTTTSSEEECCCSBSSCEEEEESSS--------------CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEE
T ss_pred HHHhcCcCCCceEEeCCCccEEEEEECCCC--------------cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEE
Confidence 655444444 2222345677888887432 12567788899999999832 245788
Q ss_pred ecCC-cHHHHHHHHHHHHHHHhh
Q 011959 452 SLAH-SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 452 ~~~~-t~e~i~~~l~~l~~~~~~ 473 (474)
++.. +++++++++++|++++++
T Consensus 392 s~~~~~~~~i~~~~~~l~~~l~~ 414 (423)
T 3ez1_A 392 APTRPPVEEVRTAMQVVAACIRL 414 (423)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHHHHHH
Confidence 7764 999999999999998864
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=232.13 Aligned_cols=323 Identities=13% Similarity=0.053 Sum_probs=227.2
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC--------CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--------APCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--------~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA 167 (474)
+|..|+|+.+. |+.+|.|++++.+++.+..... ...+...++.++++++++ ..++++|++||+++
T Consensus 27 ~~~~yld~~~~------~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNSL------GARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTTS------CCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCCc------CCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 46788887543 4678999999999997631111 113556789999999987 45799999999999
Q ss_pred HHHHHHHhHhh----cCCcEEEEEeCCCCCCchhHHHh----c--CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHH
Q 011959 168 CMGVLRLARAF----TGRERIIKFEGCYHGHADPFLVK----A--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (474)
Q Consensus 168 ~~~al~~ar~~----~~~~~ii~~~~~yhg~~~~~~~~----~--g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le 237 (474)
++.+++.++.+ .+++++|+.++.+|+.+...+.. . |. ++..++. +++|+
T Consensus 101 l~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~-------------------~~~~v~~--~~~l~ 159 (416)
T 1qz9_A 101 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGY-------------------TLRLVDS--PEELP 159 (416)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSC-------------------EEEEESS--GGGHH
T ss_pred HHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCc-------------------eEEEeCc--HHHHH
Confidence 99999865433 45566788888888855443211 1 22 2444544 67788
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceee--hhhh
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKI 315 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t--~sK~ 315 (474)
+.++ +++++|++++++|++|.+.+ +++|.++|++||++||+||+|+.-.. ......+ .+|+++ ++|.
T Consensus 160 ~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~g~~--~~~~~~~--~~d~~~~s~~K~ 228 (416)
T 1qz9_A 160 QAID---QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHSAGAV--PVDLHQA--GADYAIGCTYKY 228 (416)
T ss_dssp HHCS---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTTTTS--CCCHHHH--TCSEEEECSSST
T ss_pred HHhC---CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEccccccCc--CCChhhc--CCCEEEecCccc
Confidence 8776 36889999999999999998 99999999999999999999962111 1112223 367764 5799
Q ss_pred cCCCcce-EEEEecHHHHHhhcCCCCc--------------------ccccCCCCChHHHHHHHHHHHHhcC---CCHHH
Q 011959 316 IGGGLPV-GAYGGRRDIMEMVAPAGPM--------------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYE 371 (474)
Q Consensus 316 l~~G~~i-G~~~~~~~i~~~~~~~~~~--------------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~ 371 (474)
+++|.++ |++++++++++.+.+.... ......+.|+.+++++.++|+.+.+ +++.+
T Consensus 229 l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~ 308 (416)
T 1qz9_A 229 LNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRR 308 (416)
T ss_dssp TCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9888888 9999999987766532111 0112234678888888889988764 35677
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeeEEe----eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc
Q 011959 372 YLNKITGELTQGIIDAGKKAGHAICGG----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~~v~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 447 (474)
+++++++++.+.|+++....++....+ ..+.++++.+.+ ...+.+.|.++||++...+..
T Consensus 309 ~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------------~~~l~~~l~~~gi~~~~~~~~ 372 (416)
T 1qz9_A 309 KSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE----------------GYAVIQALIDRGVIGDYREPR 372 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT----------------HHHHHHHHHTTTEECEEETTT
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC----------------HHHHHHHHHhCCcEeccCCCC
Confidence 888888888888877522102211111 135666666521 257888899999998765556
Q ss_pred ceEEecC---CcHHHHHHHHHHHHHHHhh
Q 011959 448 AGFTSLA---HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 448 ~~~~~~~---~t~e~i~~~l~~l~~~~~~ 473 (474)
.+|+++. +|++++++++++|++++++
T Consensus 373 ~lRis~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 373 IMRFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp EEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 7888764 5999999999999998864
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=231.46 Aligned_cols=308 Identities=11% Similarity=0.060 Sum_probs=202.4
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC----CCCeEEEeCCHHHHHHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRL 174 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~~v~~~~sGseA~~~al~~ 174 (474)
.++|||.++. +.++ .+|++++++.+++.+....+++.....++.+.++++++ ..+++++++||++|++.+++.
T Consensus 19 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~ 95 (335)
T 1uu1_A 19 RDKTYLALNE--NPFP-FPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLM 95 (335)
T ss_dssp CCSEEESSCC--CSSC-CCHHHHHHHHHTCCGGGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHH
T ss_pred CcceECCCCC--CCCC-CCHHHHHHHHHHhhhhhhhcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHH
Confidence 4678988885 3355 68999999999873211122222223455555555543 457999999999999999995
Q ss_pred hHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011959 175 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (474)
Q Consensus 175 ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (474)
+ +++|++. ++||++...+ ...|..+...+. .... .+ |+++| +++++|++..
T Consensus 96 ---~--gd~Vl~~-p~y~~~~~~~-~~~g~~~~~v~~--~~~~---------~~---d~~~l--------~~~~~v~l~~ 146 (335)
T 1uu1_A 96 ---F--DRSVFFP-PTYSCYRIFA-KAVGAKFLEVPL--TKDL---------RI---PEVNV--------GEGDVVFIPN 146 (335)
T ss_dssp ---S--SEEEECS-SSCHHHHHHH-HHHTCEEEECCC--CTTS---------CC---CCCCC--------CTTEEEEEES
T ss_pred ---h--CCcEEEC-CCcHHHHHHH-HHcCCeEEEecc--CCCC---------CC---CHHHc--------CCCCEEEEeC
Confidence 3 5788888 9999865443 334443332211 1110 00 33333 1456666444
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-ccccCCCCceeehhhhcC-CCcceEEEEecHHH
Q 011959 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDI 331 (474)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i 331 (474)
++|++|.+.+ .+++.++++.+| +||+||+|++| +. .... .+..+....+.++||.+| +|+|+||+++++++
T Consensus 147 p~nptG~~~~----~~~l~~l~~~~~-~li~De~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 220 (335)
T 1uu1_A 147 PNNPTGHVFE----REEIERILKTGA-FVALDEAYYEFHGE-SYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKF 220 (335)
T ss_dssp SCTTTCCCCC----HHHHHHHHHTTC-EEEEECTTHHHHCC-CCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHH
T ss_pred CCCCCCCCCC----HHHHHHHHHhCC-EEEEECcchhhcch-hHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHH
Confidence 4778898887 445555555558 99999999877 42 1111 122222334558999999 89999999999999
Q ss_pred HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEec
Q 011959 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410 (474)
Q Consensus 332 ~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~ 410 (474)
++.+... ..+++.|+++++++.++|+..+. ++..++++++++++.+.|++. ++.. .++.|.++++.+..
T Consensus 221 ~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~~~~~~~~~~~~~~ 290 (335)
T 1uu1_A 221 IDAYNRV-----RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GYRI-TDSRGNFVFVFMEK 290 (335)
T ss_dssp HHHHHHH-----SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----TCCB-CCCCSSEEEEECCT
T ss_pred HHHHHHh-----cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CcEE-cCCCCeEEEEECCC
Confidence 8887631 13468899999999999975321 455666777777777777665 2221 24557777766521
Q ss_pred CCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecCCcHHHHHHHHHHHHHH
Q 011959 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~t~e~i~~~l~~l~~~ 470 (474)
....++.+.|.++||++.+ ....+|+++.. ++++++++++|+++
T Consensus 291 --------------~~~~~~~~~l~~~gi~v~~-~~~~iRis~~~-~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 291 --------------EEKERLLEHLRTKNVAVRS-FREGVRITIGK-REENDMILRELEVF 334 (335)
T ss_dssp --------------HHHHHHHHHHHHHTEEEEE-ETTEEEEECCC-HHHHHHHHHHHHCC
T ss_pred --------------CCHHHHHHHHHHCCEEEEE-CCCeEEEEeCC-HHHHHHHHHHHHhh
Confidence 1235688889999999998 34568888754 67899999998764
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-27 Score=232.37 Aligned_cols=318 Identities=14% Similarity=0.116 Sum_probs=219.4
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CC---CCCC--HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcE
Q 011959 113 IGHADDQVLAALGETMKKGT---SF---GAPC--LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 183 (474)
Q Consensus 113 lG~~~p~v~~a~~~~~~~~~---~~---~~~~--~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ 183 (474)
.|+.++.|++++.+++.+.. .+ .++. ....++.+.++++++ ..+++++++||++|++.+++..+ ..++++
T Consensus 25 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~-~~~gd~ 103 (390)
T 1elu_A 25 QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD-WHQGDE 103 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC-CCTTCE
T ss_pred cCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCC-CCCCCE
Confidence 57788999999999987632 11 1222 567889999999986 45689999999999999999642 356689
Q ss_pred EEEEeCCCCCCchhH---HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCC
Q 011959 184 IIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (474)
Q Consensus 184 ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (474)
|++.+++||+..... ....|..+..++....... ..|+++|++.++ +++++|++++++|++|
T Consensus 104 vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~i~---~~~~~v~~~~~~nptG 168 (390)
T 1elu_A 104 ILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQ------------GDAAAVLANHLG---PKTRLVILSHLLWNTG 168 (390)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSS------------SCHHHHHHTTCC---TTEEEEEEESBCTTTC
T ss_pred EEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCc------------cchHHHHHHhcC---CCceEEEEeccccCCc
Confidence 999999999865443 2233443322211100000 016888888775 3689999999999999
Q ss_pred cccCCHHHHHHHHHHHH----HhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHh
Q 011959 261 FIAPKPDFLNAIRRITK----ENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEM 334 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~----~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~ 334 (474)
.+.+ +++|.++|+ +||++||+||+|+-.... . +.....+|++ +++|.+.+|+++|++++++++++.
T Consensus 169 ~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~--~--~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~ 240 (390)
T 1elu_A 169 QVLP----LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP--L--DFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGE 240 (390)
T ss_dssp CBCC----HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC--C--CTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGG
T ss_pred eecC----HHHHHHHHhhhhhhcCcEEEEEcccccCCcC--C--ChhhcCCCEEEccccccccCCCceEEEEECHHhHhh
Confidence 9999 999999999 999999999999621211 1 1112346776 499977777889999999998887
Q ss_pred hcCCCCc-------------------ccccCCCCChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHHhhhc
Q 011959 335 VAPAGPM-------------------YQAGTLSGNPLAMTAGIHTLKRLKEPG----TYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 335 ~~~~~~~-------------------~~~~t~~~~~~~~aaa~aal~~~~~~~----~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
+.+.... ....+.+.|+++++++.++++.+.+.+ ..++++++.+++.+.|+++ .
T Consensus 241 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~-- 317 (390)
T 1elu_A 241 INPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL-P-- 317 (390)
T ss_dssp CCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS-T--
T ss_pred cCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc-C--
Confidence 7632100 012234567788888888888765433 5566666667777766653 1
Q ss_pred CCeeEE--eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-CcceEEec--CCcHHHHHHHHHH
Q 011959 392 GHAICG--GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSL--AHSSDDIQHTITA 466 (474)
Q Consensus 392 ~~~~~v--~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~~~~--~~t~e~i~~~l~~ 466 (474)
++.... ++.|.++.+.+.... ...++.+.|.++||++.++. ...+|+++ .++++++++++++
T Consensus 318 g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~ 384 (390)
T 1elu_A 318 HVHCLATSAPQAGLVSFTVDSPL-------------GHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLAR 384 (390)
T ss_dssp TEEESCSSCCSSSEEEEEECSSS-------------CHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEecCccccccEEEEEcCCCC-------------CHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHH
Confidence 211111 356788888763210 12568888899999998874 45678874 5899999999999
Q ss_pred HHHH
Q 011959 467 AEKV 470 (474)
Q Consensus 467 l~~~ 470 (474)
|+++
T Consensus 385 l~~~ 388 (390)
T 1elu_A 385 LADF 388 (390)
T ss_dssp HTTC
T ss_pred HHhh
Confidence 8753
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=230.53 Aligned_cols=327 Identities=13% Similarity=0.073 Sum_probs=225.6
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLA 175 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~~--~~~v~~~~sGseA~~~al~~a 175 (474)
+.|+|..+ -++.+|++.+++.+++.. .++ ...+...+++++++++++. .+.+++++||++|++.+++..
T Consensus 20 ~~~l~~~~------~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l 91 (386)
T 2dr1_A 20 KYKLFTAG------PVACFPEVLEIMKVQMFS--HRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNG 91 (386)
T ss_dssp CSEECCSS------SCCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHH
T ss_pred cceeecCC------CcCCcHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHh
Confidence 35676543 245689999988776532 221 1246778999999998863 367999999999999999953
Q ss_pred HhhcCCcEEEEEeCCCCCC-chhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011959 176 RAFTGRERIIKFEGCYHGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (474)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~-~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (474)
..++++|++.+++||+. ........|..+..++... .+ ..|+++|++.+++. +++++|++++
T Consensus 92 --~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~-~~~~~v~~~~ 154 (386)
T 2dr1_A 92 --VSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP-GK-------------AVKPEDLDDALRKN-PDVEAVTITY 154 (386)
T ss_dssp --SCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TC-------------CCCHHHHHHHHHHC-TTCCEEEEES
T ss_pred --hcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC-CC-------------CCCHHHHHHHHhcC-CCCcEEEEEe
Confidence 34568899999999883 2222233343222211110 00 13899999999643 3578888889
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHH
Q 011959 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIM 332 (474)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~ 332 (474)
++|++|.+.+ +++|.++|++||++||+||+|+.+.. ......+ .+|++ +++|+++++.++|+++++++++
T Consensus 155 ~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~~~--~~~~~~~--~~di~~~s~sK~~~~~~g~G~~~~~~~~~ 226 (386)
T 2dr1_A 155 NETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMGGA--DIKFDKW--GLDVVFSSSQKAFGVPPGLAIGAFSERFL 226 (386)
T ss_dssp EETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBTTB--CCCTTTT--TCSEEEEETTSTTCCCSSCEEEEECHHHH
T ss_pred ecCCcchhCC----HHHHHHHHHHcCCeEEEEccccccCc--ccccccc--CCcEEEEeccccccCCCceEEEEECHHHH
Confidence 8899999988 99999999999999999999974311 1112222 35766 5669999655699999999998
Q ss_pred HhhcCCC-------------Cc--ccccCCCCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011959 333 EMVAPAG-------------PM--YQAGTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGH 393 (474)
Q Consensus 333 ~~~~~~~-------------~~--~~~~t~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (474)
+.+.... .. ....+++.|+++++++.++|+.+.+. +..++++++.+++.+.|+++ ...+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--g~~~ 304 (386)
T 2dr1_A 227 EIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI--GLDI 304 (386)
T ss_dssp HHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT--TCCB
T ss_pred HHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc--CCee
Confidence 8774210 00 12345678889999999999876543 56777888888888888775 2222
Q ss_pred eeE-EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecC--CcHHHHHHHHHH
Q 011959 394 AIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITA 466 (474)
Q Consensus 394 ~~~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~--~t~e~i~~~l~~ 466 (474)
... ....+.++++.+... ....++.+.|.++||.+.++. ...+|+++. +|++++++++++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 371 (386)
T 2dr1_A 305 LAEPGHESPTITAVLTPPG-------------IKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDN 371 (386)
T ss_dssp SSCTTCBCSSEEEEECCTT-------------CCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHH
T ss_pred CcCccccCCceEEEEcCCC-------------CCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 110 001467777776421 012578889999999998863 346788766 799999999999
Q ss_pred HHHHHhh
Q 011959 467 AEKVLRQ 473 (474)
Q Consensus 467 l~~~~~~ 473 (474)
|++++++
T Consensus 372 l~~~~~~ 378 (386)
T 2dr1_A 372 LREVINE 378 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=242.05 Aligned_cols=336 Identities=11% Similarity=0.038 Sum_probs=216.1
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHH--Hhc-CCCCCCC-HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHH--HHHHH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETM--KKG-TSFGAPC-LLENVLAEMVISAVP-SIEMVRFVNSGTEAC--MGVLR 173 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~--~~~-~~~~~~~-~~~~~la~~l~~~~~-~~~~v~~~~sGseA~--~~al~ 173 (474)
+|||..|.....+...++.+++++.+++ ..+ ..++|+. ....+|.+.++++++ ..++|++|+|+++++ ..+++
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~ 113 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW 113 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence 5788877421000124557777776653 122 1122322 213455555555554 567999999999997 55555
Q ss_pred HhHhhc---C--------CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhc
Q 011959 174 LARAFT---G--------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (474)
Q Consensus 174 ~ar~~~---~--------~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (474)
... -. + ++.|++.+++|+++...+. ..|..+..++... .+ .|+++|++.++.
T Consensus 114 ~l~-~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~-~g--------------~d~~~l~~~l~~ 176 (422)
T 3d6k_A 114 SYT-WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITE-HFGFEMINVPMTD-EG--------------PDMGVVRELVKD 176 (422)
T ss_dssp HHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHH-HHTCEEEEEEEET-TE--------------ECHHHHHHHHTS
T ss_pred Hhc-CcccccccccccCCCCEEEEeCCccHHHHHHHH-HcCCEEEecCCCC-CC--------------CCHHHHHHHHhc
Confidence 321 11 1 2369999999998654433 3343222111100 01 289999999874
Q ss_pred CCCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHHH-HhCCEEEEecccc--Cc-ccCCCc-cc-------cccCCCCce
Q 011959 243 NKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITK-ENGALLIFDEVMT--GF-RLAYGG-AQ-------EYFGVTPDL 309 (474)
Q Consensus 243 ~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~-~~g~llI~DEv~~--g~-r~g~~~-~~-------~~~g~~pdi 309 (474)
. ++++|++.| ++|++|.+.+ .+++++|.++|+ +||++||+||+|. +| +.+... .. +..+...++
T Consensus 177 ~--~~~~v~~~~~~~NPtG~~~~-~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (422)
T 3d6k_A 177 P--QVKGMWTVPVFGNPTGVTFS-EQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFM 253 (422)
T ss_dssp T--TEEEEEECCSSCTTTCCCCC-HHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEE
T ss_pred C--CCeEEEEcCCCCCCCCCCCC-HHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEE
Confidence 2 578888555 5566887765 555999999999 9999999999996 46 443211 11 122334455
Q ss_pred eehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHH
Q 011959 310 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---E--PGTYEYLNKITGELTQGI 384 (474)
Q Consensus 310 ~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~~~~~~~~~~~~~l~~~L 384 (474)
.+|||..++|+|+||+++++++++.+. ......+++.|++++.++.++|+... + +...+.++++.+++.+.|
T Consensus 254 ~S~SK~~~~GlriG~~~~~~~l~~~l~---~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 330 (422)
T 3d6k_A 254 SSTSKITHAGSGVSFFASSKENIEWYA---SHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEIL 330 (422)
T ss_dssp EESTTTSCTTSSCEEEECCHHHHHHHH---HHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhhcCcccceEEEEeCHHHHHHHH---HHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999668999999999999998886 33344567889999999988885311 1 233444555666777777
Q ss_pred HHHhhhcCCeeE-EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------CcceEEec
Q 011959 385 IDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSL 453 (474)
Q Consensus 385 ~~~~~~~~~~~~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------~~~~~~~~ 453 (474)
.+.....+.... .+..|+++++.+... + ...+.+.|.++||++.+++ ...+|+++
T Consensus 331 ~~~l~~~~~~~~~~p~~g~~~~~~~~~~-----------~---~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~ 396 (422)
T 3d6k_A 331 DSRLSEYGVAKWTSPTGGYFISVDVVPG-----------T---ASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAP 396 (422)
T ss_dssp HHHHGGGTCEEECCCSBSSCEEEEESTT-----------C---HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECC
T ss_pred HHhcCcCCceEEeCCCcceEEEEECCCC-----------C---HHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEec
Confidence 665444443222 334677888887421 1 2457788889999999832 23578887
Q ss_pred C-CcHHHHHHHHHHHHHHHhh
Q 011959 454 A-HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~-~t~e~i~~~l~~l~~~~~~ 473 (474)
. .+++++++++++|++++++
T Consensus 397 ~~~~~e~i~~~~~~l~~~l~~ 417 (422)
T 3d6k_A 397 SLPPVAELEVAMDGFATCVLM 417 (422)
T ss_dssp SSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 7 6999999999999998764
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=241.46 Aligned_cols=296 Identities=10% Similarity=0.009 Sum_probs=201.2
Q ss_pred HHHHHHHHhhCC-CCCeEEEeCCHHHHH--HHHHHHhHhh-cC---------CcEEEEEeCCCCCCchhHHHhcCCCCcc
Q 011959 142 NVLAEMVISAVP-SIEMVRFVNSGTEAC--MGVLRLARAF-TG---------RERIIKFEGCYHGHADPFLVKAGSGVAT 208 (474)
Q Consensus 142 ~~la~~l~~~~~-~~~~v~~~~sGseA~--~~al~~ar~~-~~---------~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (474)
.+|.+.++++++ ..++|++|+|+++++ +.+++..... .+ ++.|++.+++|+++...+ ...|..+..
T Consensus 81 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~-~~~g~~~~~ 159 (427)
T 3ppl_A 81 VDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSIT-ERFGFEMIS 159 (427)
T ss_dssp HHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH-HHTTCEEEE
T ss_pred HHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHH-HHcCCEEEE
Confidence 455555555544 568999999999999 5777743221 21 688999999998854433 333432221
Q ss_pred CCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHH-HHhCCEEEEe
Q 011959 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRIT-KENGALLIFD 286 (474)
Q Consensus 209 ~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~-~~~g~llI~D 286 (474)
++... .+ -|+++|++.++. +++++|+++| .+|++|.+.+.++ +++|.++| ++||++||+|
T Consensus 160 v~~~~-~g--------------~d~~~l~~~l~~--~~~~~v~~~p~~~NPtG~~~~~~~-~~~l~~~a~~~~~~~ii~D 221 (427)
T 3ppl_A 160 VPMNE-DG--------------PDMDAVEELVKN--PQVKGMWVVPVFSNPTGFTVTEDV-AKRLSAMETAAPDFRVVWD 221 (427)
T ss_dssp EEEET-TE--------------ECHHHHHHHTTS--TTEEEEEECCSSCTTTCCCCCHHH-HHHHHHCCCSSTTCEEEEE
T ss_pred eCCCC-CC--------------CCHHHHHHHHhc--CCCeEEEECCCCCCCCCccCCHHH-HHHHHHHHhhcCCCEEEEE
Confidence 11100 01 189999999853 3688898886 4566888887666 99999999 9999999999
Q ss_pred ccccCc-ccCCC----cccc------ccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHH
Q 011959 287 EVMTGF-RLAYG----GAQE------YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 355 (474)
Q Consensus 287 Ev~~g~-r~g~~----~~~~------~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~a 355 (474)
|+|.++ ..+.. ...+ ..+...++.||||.+++|+|+||+++++++++.+. ......+++.+++.+.
T Consensus 222 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~q~ 298 (427)
T 3ppl_A 222 NAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYT---GHAGIRGIGPNKVNQL 298 (427)
T ss_dssp CTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHH---HHHHHHCSCCCHHHHH
T ss_pred CCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHH---HHhhcccCCCCHHHHH
Confidence 999885 33221 1111 22334446689999778999999999999998886 3334557788999999
Q ss_pred HHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHHHHhhhcC-CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHH
Q 011959 356 AGIHTLKRL---KE--PGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 429 (474)
Q Consensus 356 aa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 429 (474)
++.++|+.. .+ ....+.++++.+.+.+.|.+.+...+ +....+..|+++++.+... ....
T Consensus 299 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~--------------~~~~ 364 (427)
T 3ppl_A 299 AHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG--------------TASR 364 (427)
T ss_dssp HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT--------------CHHH
T ss_pred HHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc--------------hHHH
Confidence 888887531 11 23445555566666666665444333 2223344677888877431 1256
Q ss_pred HHHHHHHCCeEecccC----------CcceEEecCC-cHHHHHHHHHHHHHHHhh
Q 011959 430 FYRGMLEEGVYFAPSQ----------FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 430 ~~~~l~~~Gv~v~~~~----------~~~~~~~~~~-t~e~i~~~l~~l~~~~~~ 473 (474)
+.+.|.++||++.+++ ...+|+++.. ++++|++++++|.+++++
T Consensus 365 ~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~ 419 (427)
T 3ppl_A 365 VAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLL 419 (427)
T ss_dssp HHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 7888899999999832 2457887666 899999999999998864
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-25 Score=222.79 Aligned_cols=331 Identities=14% Similarity=0.136 Sum_probs=226.0
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---C---CCCC---CHHHHHHHHHHHhhCCC--CCeEEEeCCH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---S---FGAP---CLLENVLAEMVISAVPS--IEMVRFVNSG 164 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~---~~~~---~~~~~~la~~l~~~~~~--~~~v~~~~sG 164 (474)
.+|+++++|..+. + ++.++.|++++.+++.+.. + +.+. .....++.+.++++++. .+++++++||
T Consensus 24 ~~g~~~i~l~~~~---~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~ 99 (420)
T 1t3i_A 24 INGHPLVYLDNAA---T-SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNA 99 (420)
T ss_dssp ETTEECEECBTTT---C-CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSH
T ss_pred cCCCceEEecCCc---c-CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCCh
Confidence 3677888887763 2 3678999999999987631 1 1111 24567889999998853 4789999999
Q ss_pred HHHHHHHHHHhHh--hcCCcEEEEEeCCCCCCchh---HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHH
Q 011959 165 TEACMGVLRLARA--FTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (474)
Q Consensus 165 seA~~~al~~ar~--~~~~~~ii~~~~~yhg~~~~---~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~ 239 (474)
++|++.+++.++. ..++++|++.+++||+.... .....|..+..++... .+ ..|+++|++.
T Consensus 100 t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~ 165 (420)
T 1t3i_A 100 TEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE-QE-------------SFDLEHFKTL 165 (420)
T ss_dssp HHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT-TS-------------SBCHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCC-CC-------------CcCHHHHHHh
Confidence 9999999997521 45668899999999996422 2223344332211110 00 0289999998
Q ss_pred HhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcC
Q 011959 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIG 317 (474)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~ 317 (474)
+++ ++++|++++++|++|.+.+ +++|.++|++||++||+||+|+.... ......++ +|++ +++|.++
T Consensus 166 l~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~~~--~~~~~~~~--~di~~~s~sK~~~ 234 (420)
T 1t3i_A 166 LSE---KTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQSAPHY--PLDVQLID--CDWLVASGHKMCA 234 (420)
T ss_dssp CCT---TEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTTTTS--CCCHHHHT--CSEEEEEGGGTTS
T ss_pred hCC---CceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhccCCc--cCchhhcC--CCEEEEehhhhcC
Confidence 863 6889999999999999998 99999999999999999999963311 11222333 6766 5669776
Q ss_pred CCcceEEEEecHHHHHhhcCCCCcc-----------------cccCCCCChHHHHHHHH-HHHHhcC---CCHHHHHHHH
Q 011959 318 GGLPVGAYGGRRDIMEMVAPAGPMY-----------------QAGTLSGNPLAMTAGIH-TLKRLKE---PGTYEYLNKI 376 (474)
Q Consensus 318 ~G~~iG~~~~~~~i~~~~~~~~~~~-----------------~~~t~~~~~~~~aaa~a-al~~~~~---~~~~~~~~~~ 376 (474)
+ ..+|++++++++++.+....... ...+.+.+++.+.+++. +++.+.+ +.+.++++++
T Consensus 235 ~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 313 (420)
T 1t3i_A 235 P-TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVEL 313 (420)
T ss_dssp C-TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C-CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3 23999999999998886421110 00123456677776665 6776654 4566677777
Q ss_pred HHHHHHHHHHHhhhcCCeeEEe-----eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc-------
Q 011959 377 TGELTQGIIDAGKKAGHAICGG-----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS------- 444 (474)
Q Consensus 377 ~~~l~~~L~~~~~~~~~~~~v~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------- 444 (474)
.+++.+.|+++ . ++....+ +.|.++.+.+... + ..++.+.|.++||.+.++
T Consensus 314 ~~~l~~~L~~~-~--g~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~l~~~gi~v~~~~~~~~~~ 376 (420)
T 1t3i_A 314 THYLWQGLGQI-P--QLRLYGPNPKHGDRAALASFNVAGL-----------H---ASDVATMVDQDGIAIRSGHHCTQPL 376 (420)
T ss_dssp HHHHHHHHHTC-T--TEEEESCCGGGSCBCSEEEEEETTB-----------C---HHHHHHHHHTTTEECBCSCTTCHHH
T ss_pred HHHHHHHHHhC-C--CeEEeCCCccccccCCEEEEEECCC-----------C---HHHHHHHHHHCCeEEeeccccchHH
Confidence 77777777653 1 2221112 2377777776310 1 246778888999999886
Q ss_pred ----C-CcceEEecC--CcHHHHHHHHHHHHHHHhh
Q 011959 445 ----Q-FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 445 ----~-~~~~~~~~~--~t~e~i~~~l~~l~~~~~~ 473 (474)
+ ...+|+++. ++++++++++++|++++++
T Consensus 377 ~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 412 (420)
T 1t3i_A 377 HRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF 412 (420)
T ss_dssp HHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 356788765 5999999999999998865
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=221.01 Aligned_cols=323 Identities=18% Similarity=0.209 Sum_probs=218.2
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC-C--C-----CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF-G--A-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMG 170 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~--~-----~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~ 170 (474)
.|+|+.++ ++.+|+|++++.+++++.... . + ......++.++++++++ ..+++++++||++|++.
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 57776654 468999999999999863111 0 0 12445788888888886 45799999999999999
Q ss_pred HHHHhHh--hcCCcEEEEEeCCCCCCchhHH--HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 171 VLRLARA--FTGRERIIKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 171 al~~ar~--~~~~~~ii~~~~~yhg~~~~~~--~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
+++.++. ..++++|++.+++||+...... ...|..+..++... .+ ..|+++|++.+++ +
T Consensus 77 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~---~ 139 (384)
T 1eg5_A 77 ILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS-RG-------------VVKLEELEKLVDE---D 139 (384)
T ss_dssp HHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT-TS-------------CBCHHHHHHHCCT---T
T ss_pred HHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC-CC-------------ccCHHHHHHHhCC---C
Confidence 9996542 1456889999989988654442 33344332221110 01 1289999998863 6
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC--CEEEEeccccCc-ccCCCccccccCCCCceee--hhhhcCC-Cc
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT--LGKIIGG-GL 320 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g--~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t--~sK~l~~-G~ 320 (474)
+++|+++++++++|.+.+ +++|.++|++|| ++||+||+|+ | .. ..... ...+|+++ ++|.++. |
T Consensus 140 ~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~--~~~~~--~~~~di~~~s~sK~~g~~G- 209 (384)
T 1eg5_A 140 TFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI--PFSLE--KLEVDYASFSAHKFHGPKG- 209 (384)
T ss_dssp EEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS--CCCCT--TTCCSEEEEEGGGGTSCTT-
T ss_pred CeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCc--ccCch--hcCCCEEEecHHHhcCCCc-
Confidence 889999999999999999 899999999999 9999999996 4 21 11112 22467764 5698873 5
Q ss_pred ceEEEEecHHH--HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE
Q 011959 321 PVGAYGGRRDI--MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (474)
Q Consensus 321 ~iG~~~~~~~i--~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (474)
+|++++++++ ...+..........+++.|+++++++.++|+.+.+ ++..++++++.+++.+.|++. ++...
T Consensus 210 -~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~ 284 (384)
T 1eg5_A 210 -VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL----GAHII 284 (384)
T ss_dssp -CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT----TCEEC
T ss_pred -eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC----CeEEe
Confidence 7999999876 22221100001124567889999999999987543 456677777777777777652 22211
Q ss_pred Ee---eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----------------------CcceE
Q 011959 397 GG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGF 450 (474)
Q Consensus 397 v~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~~ 450 (474)
.. ..+.++.+.+... + ...+.+.|.++||.+.++. ...+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 350 (384)
T 1eg5_A 285 TPLEISLPNTLSVSFPNI-----------R---GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIR 350 (384)
T ss_dssp SCTTSBCTTEEEEECTTC-----------C---HHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEE
T ss_pred CCcccCCCCEEEEEeCCC-----------C---HHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEE
Confidence 11 1244555554210 1 2567888899999998742 13578
Q ss_pred EecC--CcHHHHHHHHHHHHHHHhhC
Q 011959 451 TSLA--HSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 451 ~~~~--~t~e~i~~~l~~l~~~~~~~ 474 (474)
+++. +|++++++++++|+++++++
T Consensus 351 i~~~~~~~~~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 351 ISLCKYNTEEEVDYFLKKIEEILSFL 376 (384)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8766 79999999999999998753
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=229.85 Aligned_cols=324 Identities=15% Similarity=0.127 Sum_probs=222.5
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCC-CCC-eEEEeCCHHHHHHHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRL 174 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-~~~-~v~~~~sGseA~~~al~~ 174 (474)
++.|+|..+. ++.+|++++++.+++.. .++. ..+...+++++++++++ ..+ ++++++||++|++.+++.
T Consensus 33 ~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~ 104 (393)
T 1vjo_A 33 PSRLLLGPGP------SNAHPSVLQAMNVSPVG--HLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIAN 104 (393)
T ss_dssp CCCEECSSSC------CCCCHHHHHHHSSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHH
T ss_pred ccceeccCCC------CCCCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHh
Confidence 4567774432 45789999998876643 2221 23567889999999886 456 899999999999999996
Q ss_pred hHhhcCCcEEEEEeCCCCCCc-hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011959 175 ARAFTGRERIIKFEGCYHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (474)
Q Consensus 175 ar~~~~~~~ii~~~~~yhg~~-~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (474)
+ ..++++|++.+++||+.. ...+...|..+..++... .+ ..|+++|++.++++ ++++|+++
T Consensus 105 ~--~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~ 166 (393)
T 1vjo_A 105 A--VEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW-GE-------------VFSLEELRTALETH--RPAILALV 166 (393)
T ss_dssp H--CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TC-------------CCCHHHHHHHHHHH--CCSEEEEE
T ss_pred c--cCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCC-CC-------------CCCHHHHHHHHhhC--CceEEEEe
Confidence 3 455678999999998821 122223343222211111 00 13899999999752 46788899
Q ss_pred cccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee--hhhhcCCCcceEEEEecHH
Q 011959 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRD 330 (474)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~~ 330 (474)
+++|++|.+.+ +++|.++|++||++||+||+|+ + .. .. ......+|+++ ++|+++++.++|+++++++
T Consensus 167 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~--~~--~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~ 237 (393)
T 1vjo_A 167 HAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGV--PI--FLDAWGVDLAYSCSQKGLGCSPGASPFTMSSR 237 (393)
T ss_dssp SEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTS--CC--CTTTTTCSEEECCSSSTTCSCSSCEEEEECHH
T ss_pred ccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCc--CC--cccccCccEEEEcCcccccCCCceEEEEECHH
Confidence 99999999988 8889999999999999999997 4 21 11 12234568775 5699986559999999999
Q ss_pred HHHhhcCC----CCccc------------ccCC-CCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 331 IMEMVAPA----GPMYQ------------AGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 331 i~~~~~~~----~~~~~------------~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
+++.+... ...+. ..++ +.|+++++++.++|+.+.+ ++..++++++.+++.+.|+++ .
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g 315 (393)
T 1vjo_A 238 AIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI--G 315 (393)
T ss_dssp HHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc--C
Confidence 98887421 11111 2234 6788999999999987643 457778888888888888775 2
Q ss_pred cCCeeEEee--eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEe---cCCcHHHH
Q 011959 391 AGHAICGGY--ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTS---LAHSSDDI 460 (474)
Q Consensus 391 ~~~~~~v~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~---~~~t~e~i 460 (474)
..+... .+ .+.++++.+... ....++.+.|.++ ||.+.++. ...+|++ +..+++++
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i 381 (393)
T 1vjo_A 316 LSLHVE-KEYRLPTLTTVCIPDG-------------VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESV 381 (393)
T ss_dssp CCBSSC-GGGBCSSEEEEECCTT-------------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHH
T ss_pred CcccCC-ccccCCcEEEEEcCCC-------------CCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHH
Confidence 222110 11 234555555211 0125688889888 99998764 3467887 44678889
Q ss_pred HHHHHHHHHHHh
Q 011959 461 QHTITAAEKVLR 472 (474)
Q Consensus 461 ~~~l~~l~~~~~ 472 (474)
++++++|+++++
T Consensus 382 ~~~~~~l~~~l~ 393 (393)
T 1vjo_A 382 DQLIPALEQVLR 393 (393)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999998863
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-27 Score=232.61 Aligned_cols=317 Identities=12% Similarity=0.054 Sum_probs=213.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CC-CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCC
Q 011959 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~-~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg 193 (474)
.+|+|++++.+++... .+....+...+++++++++++ .. +.+++++||++|++.+++.. ..++++|++..++||+
T Consensus 34 ~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~--~~~gd~vl~~~~~~~~ 110 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIGH-MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL--LEPGDSFLTGTNGIWG 110 (393)
T ss_dssp CCHHHHHHTTCCCCCT-TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH--CCTTCEEEEEESSHHH
T ss_pred CCHHHHHHhcccccCc-ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc--CCCCCEEEEEeCCchh
Confidence 5788988887643211 111123556788999998886 23 36999999999999999963 5567889998888875
Q ss_pred Cc-hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHH
Q 011959 194 HA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (474)
Q Consensus 194 ~~-~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (474)
.. .......|..+...+.... + ..|+++|++.++++ ++++|++++++|++|.+.+ +++|
T Consensus 111 ~~~~~~~~~~g~~~~~~~~~~~-~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i 170 (393)
T 3kgw_A 111 MRAAEIADRIGARVHQMIKKPG-E-------------HYTLQEVEEGLAQH--KPVLLFLVHGESSTGVVQP----LDGF 170 (393)
T ss_dssp HHHHHHHHHTTCEEEEEECCTT-C-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTH
T ss_pred HHHHHHHHHcCCceEEEeCCCC-C-------------CCCHHHHHHHHhhC--CCcEEEEeccCCcchhhcc----HHHH
Confidence 33 2223334443322111110 0 12899999999853 5788899999999999998 8889
Q ss_pred HHHHHHhCCEEEEecccc-CcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcc-------
Q 011959 273 RRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY------- 342 (474)
Q Consensus 273 ~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~------- 342 (474)
+++|++||++||+||+|+ |. ..+..+.++ +|++ +++|+++++.++|++++++++++.+.......
T Consensus 171 ~~l~~~~~~~li~De~~~~g~---~~~~~~~~~--~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (393)
T 3kgw_A 171 GELCHRYQCLLLVDSVASLGG---VPIYMDQQG--IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDI 245 (393)
T ss_dssp HHHHHHTTCEEEEECTTTTTT---SCCCTTTTT--CCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCH
T ss_pred HHHHHHcCCEEEEECCccccC---cccchhhcC--CCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecH
Confidence 999999999999999996 21 122223333 4655 56699987777999999999998886421100
Q ss_pred -------------cccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEE
Q 011959 343 -------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (474)
Q Consensus 343 -------------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (474)
...+++.++.+++++.++++.+.+ +++.++++++++++.+.|+++....-........+.++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 325 (393)
T 3kgw_A 246 TYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTV 325 (393)
T ss_dssp HHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEE
T ss_pred HHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEE
Confidence 112345678888888888887654 5567788888888888887752111000001123455556
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEec-C--CcHHHHHHHHHHHHHHHhh
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL-A--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~~-~--~t~e~i~~~l~~l~~~~~~ 473 (474)
.+... ....++.+.|+++ ||++.++. ...+|+++ . .|++++++++++|++++++
T Consensus 326 ~~~~~-------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~ 387 (393)
T 3kgw_A 326 TVPAG-------------YNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQH 387 (393)
T ss_dssp ECCTT-------------BCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCC-------------CCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence 55321 1125788888888 99998753 34577775 3 5999999999999999875
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=235.74 Aligned_cols=333 Identities=11% Similarity=0.050 Sum_probs=203.7
Q ss_pred EEeccCChhhccCC-CCCHHHHHHHHHH---HH----hcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEE--eCC
Q 011959 101 YIDYVGSWGPAIIG-HADDQVLAALGET---MK----KGT-SFG---APCLLENVLAEMVISAVP---SIEMVRF--VNS 163 (474)
Q Consensus 101 ~iD~~~~~~~~~lG-~~~p~v~~a~~~~---~~----~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~--~~s 163 (474)
.|||..| .++. .++|.+.++++++ +. .+. .|. +..++++++++++..... ..++|++ |+|
T Consensus 51 ~i~l~~g---~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~g 127 (448)
T 3meb_A 51 KVNLGVG---AYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLS 127 (448)
T ss_dssp CEEESSC---CCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH
T ss_pred eEEeecc---cccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCc
Confidence 5777777 5533 3444444444444 32 111 121 123455556655521110 1479999 999
Q ss_pred HHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHH---hcCCCCccCCCCCCC-CCCCCCCCceEEccCCCHHHHHHH
Q 011959 164 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSP-GVPKGATYETLTAPFNDVSALENL 239 (474)
Q Consensus 164 GseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~-g~~~~~~~~~~~~~~~d~~~le~~ 239 (474)
|++|++.++.+...+.+++.|++.+++|+++...+.. ..|..+..+++.... +. . -|+++|++.
T Consensus 128 gt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~---------~---~d~e~l~~~ 195 (448)
T 3meb_A 128 GTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGEL---------E---IDFSNTKKD 195 (448)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCS---------S---BCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCC---------C---cCHHHHHHH
Confidence 9999999766554566778899999998775443331 344433332221111 00 0 089999999
Q ss_pred HhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC---Ccccccc-CCCCc---eee
Q 011959 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEYF-GVTPD---LTT 311 (474)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~~~~~~-g~~pd---i~t 311 (474)
+++.+++.+++++..++|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+. ......+ +..++ +.+
T Consensus 196 l~~~~~~~~~v~~~~p~NPtG~~~~~~~-l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 274 (448)
T 3meb_A 196 IQSAPEKSIFLFHACAHNPSGIDFTEAQ-WKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQS 274 (448)
T ss_dssp HHHSCTTCEEEEESSSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEE
T ss_pred HHhCCCCcEEEEeCCCCCCCCcCCCHHH-HHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEec
Confidence 9865445677777777888998876555 999999999999999999999988 4331 1122211 23345 347
Q ss_pred hhhhcC-CCcceEEE--Ee--------c-H----HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc-------C-C
Q 011959 312 LGKIIG-GGLPVGAY--GG--------R-R----DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-------E-P 367 (474)
Q Consensus 312 ~sK~l~-~G~~iG~~--~~--------~-~----~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-------~-~ 367 (474)
|||.++ .|+|+||+ ++ + + ++++.+. ......+.+.+.+++.++.++|+... . +
T Consensus 275 ~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~ 351 (448)
T 3meb_A 275 FSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMT---LQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVK 351 (448)
T ss_dssp CTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHH---HHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred ccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHH---HHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999 79999998 65 3 4 5555554 22233455667788888777764321 1 3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhc-----CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH-HHCCeEe
Q 011959 368 GTYEYLNKITGELTQGIIDAGKKA-----GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYF 441 (474)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~-----~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v 441 (474)
...++++++++++.+.|+++.... .+....+..|.+.+..+. .++...+ .++||++
T Consensus 352 ~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------------~~~~~~ll~~~gV~v 413 (448)
T 3meb_A 352 EMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT------------------PEHVDYLKEKWSIYL 413 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC------------------HHHHHHHHHHHCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC------------------HHHHHHHHHhCCEEE
Confidence 455666666777777766541000 011111223444333221 2344555 5679999
Q ss_pred cccCCcceEEecCC-cHHHHHHHHHHHHHHHhh
Q 011959 442 APSQFEAGFTSLAH-SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 442 ~~~~~~~~~~~~~~-t~e~i~~~l~~l~~~~~~ 473 (474)
.++. .|+++.. ++++|++++++|++++++
T Consensus 414 ~~G~---gRis~a~~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 414 VKAG---GRMSMCGLTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp CSGG---GEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred eCCC---cEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 9854 3887665 888999999999999875
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-27 Score=236.62 Aligned_cols=332 Identities=12% Similarity=0.101 Sum_probs=210.8
Q ss_pred CEEEeccCChhhccCC-CCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEE--EeCCHHHHH
Q 011959 99 NEYIDYVGSWGPAIIG-HADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVR--FVNSGTEAC 168 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~--~~~sGseA~ 168 (474)
..+|||..| ++++ .++|.+.+++.++..... .|+ +..++++++++++..... ..+++. .+++|++|+
T Consensus 41 ~~~i~l~~g---~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~ 117 (409)
T 4eu1_A 41 KRKVNLSIG---VYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGAL 117 (409)
T ss_dssp SSCEECCCS---SCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHH
T ss_pred cCceeeeee---EEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHH
Confidence 357888888 6644 367888888888733222 222 124556666666532221 146774 499999999
Q ss_pred HHHHHHhHhhcCC-cEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 169 MGVLRLARAFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 169 ~~al~~ar~~~~~-~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
+.+..+++.+.++ +.|++.+++|+++.. .+...|..+..++.....+. ..|+++|++.++++++..
T Consensus 118 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~l~~~~~~~ 184 (409)
T 4eu1_A 118 RIGGDLLNRFVANCNRIYGPDVGYPNHES-IFAKAGMELTPYSYYDPATK------------GLNLAGMLECLDKAPEGS 184 (409)
T ss_dssp HHHHHHGGGTSSSCCEEEEESSCCTHHHH-HHHHTTCEEEEECCEETTTT------------EECHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCcHhHHH-HHHHcCCeEEEEEeecCcCC------------cCcHHHHHHHHHhCCCCc
Confidence 9998877777665 888888888877543 33334443222111000000 018999999997654456
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC---Ccc-ccccCCCCcee---ehhhhcC-C
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGA-QEYFGVTPDLT---TLGKIIG-G 318 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~~-~~~~g~~pdi~---t~sK~l~-~ 318 (474)
++++++.++|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+. ... ....+..++++ +|||.++ .
T Consensus 185 ~~i~~~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 263 (409)
T 4eu1_A 185 VILVHACAHNPTGVDPTHDD-WRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLY 263 (409)
T ss_dssp EEEEESSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCG
T ss_pred EEEEECCCCCCCCCCCCHHH-HHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCc
Confidence 77776666788898876555 999999999999999999999988 4431 122 22234555654 7999999 7
Q ss_pred CcceEEE---EecHH----HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHh-------cC-CCHHHHHHHHHHHHHHH
Q 011959 319 GLPVGAY---GGRRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-------KE-PGTYEYLNKITGELTQG 383 (474)
Q Consensus 319 G~~iG~~---~~~~~----i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~-------~~-~~~~~~~~~~~~~l~~~ 383 (474)
|+|+||+ +++++ +++.+. ......+++.+++++.++.++|+.. +. ++.+++++++.+++.+.
T Consensus 264 G~riG~~~~v~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (409)
T 4eu1_A 264 GHRCGALHISTASAEEAKRLVSQLA---LLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSE 340 (409)
T ss_dssp GGCCEEEEEECSSHHHHHHHHHHHH---HHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEeCCHHHHHHHHHHHH---HHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 56777 555554 2223345667788998888888732 11 44566677777777777
Q ss_pred HHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccCCcceEEec-CCcHHHHH
Q 011959 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSL-AHSSDDIQ 461 (474)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~~~~-~~t~e~i~ 461 (474)
|++......+....+..|.++++.+ + .++...++ ++||++.|++ |+++ .+++++++
T Consensus 341 L~~~g~~~~~~~~~~~~~~~~~~~~-------------~-----~~~~~~ll~~~gv~v~p~~----Ri~~~~~~~~~i~ 398 (409)
T 4eu1_A 341 LKACGSVHDWSHIERQVGMMAYTGL-------------T-----REQVELLRSEYHIYMTLNG----RAAVSGLNSTNVE 398 (409)
T ss_dssp HHHTTCCSCCHHHHHSCSSEEECCC-------------C-----HHHHHHHHHHHCEECCTTC----EEEGGGCCTTTHH
T ss_pred HHhcCCCCCcceecCCceEEEEeCC-------------C-----HHHHHHHHHcCCEEEcCCC----EEEEEecCHhhHH
Confidence 7664200001111122333333221 0 23445555 6799999864 5653 46888899
Q ss_pred HHHHHHHHHHh
Q 011959 462 HTITAAEKVLR 472 (474)
Q Consensus 462 ~~l~~l~~~~~ 472 (474)
+++++|+++++
T Consensus 399 ~~~~~l~~~l~ 409 (409)
T 4eu1_A 399 YVSQAIHNVTK 409 (409)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998863
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-26 Score=225.76 Aligned_cols=327 Identities=14% Similarity=0.080 Sum_probs=220.3
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar 176 (474)
..|+|..+ .++.+|.+++++.+++.. ..+ .......++.++++++++ ..+++++++||++|++.+++.+
T Consensus 9 ~~yl~~~~------~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~- 79 (392)
T 2z9v_A 9 PVITLTAG------PVNAYPEVLRGLGRTVLY--DYDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL- 79 (392)
T ss_dssp CSEECSSS------CCCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH-
T ss_pred cceeecCC------CcCCCHHHHHHHhccccc--cccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh-
Confidence 35777543 235789999998877643 121 123456788999999886 4579999999999999999963
Q ss_pred hhcCCcEEEEEeCCCCCCchh-HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 177 AFTGRERIIKFEGCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
..++++|++.+++||+.... .....|..+..++... .+ ..|+++|++.+++. +++++|+++++
T Consensus 80 -~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~-~~~~~v~~~~~ 143 (392)
T 2z9v_A 80 -ISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPY-NE-------------AIDPQAVADMLKAH-PEITVVSVCHH 143 (392)
T ss_dssp -CCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCT-TS-------------CCCHHHHHHHHHHC-TTCCEEEEESE
T ss_pred -cCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCC-CC-------------CCCHHHHHHHHhcC-CCCcEEEEecc
Confidence 45567899999999886311 1122344332211110 01 12899999999643 25788999999
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME 333 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~ 333 (474)
+|++|.+.+ +++|.++|++||++||+||+|+.-.. ......+ .+|++ +++|+++++.++|++++++++++
T Consensus 144 ~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~g~~--~~~~~~~--~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~ 215 (392)
T 2z9v_A 144 DTPSGTINP----IDAIGALVSAHGAYLIVDAVSSFGGM--KTHPEDC--KADIYVTGPNKCLGAPPGLTMMGVSERAWA 215 (392)
T ss_dssp EGGGTEECC----HHHHHHHHHHTTCEEEEECTTTBTTB--SCCGGGG--TCSEEEECSSSTTCCCSCCEEEEECHHHHH
T ss_pred CCCCceecc----HHHHHHHHHHcCCeEEEEcccccCCc--ccccccc--cceEEEecCcccccCCCceeEEEECHHHHH
Confidence 999999998 99999999999999999999962111 1112222 35665 57898886566799999999988
Q ss_pred hhcCCC--C--c-------------ccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011959 334 MVAPAG--P--M-------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGH 393 (474)
Q Consensus 334 ~~~~~~--~--~-------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (474)
.+.... . . ......+.++.+++++.++++.+.+ ++..++++++.+++++.|+++ ...+
T Consensus 216 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~ 293 (392)
T 2z9v_A 216 KMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM--GLSV 293 (392)
T ss_dssp HHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCB
T ss_pred HhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc--CCee
Confidence 775311 0 0 0112334567777777788877644 346777788888888888764 2222
Q ss_pred ee-E-EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEec---CCcHHHHHHH
Q 011959 394 AI-C-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHT 463 (474)
Q Consensus 394 ~~-~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~~---~~t~e~i~~~ 463 (474)
.. . ....+.++++.+... ....++.+.|.++ ||.+.++. ...+|+++ .+|+++++++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~ 360 (392)
T 2z9v_A 294 WAASDSIASPTTTAVRTPDG-------------VDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAA 360 (392)
T ss_dssp SSSSGGGBCTTEEEEECCTT-------------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHH
T ss_pred ccCCccccCCceEEEECCCC-------------CCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHH
Confidence 11 0 011456667765311 0125688888887 99998763 34678874 5799999999
Q ss_pred HHHHHHHHhh
Q 011959 464 ITAAEKVLRQ 473 (474)
Q Consensus 464 l~~l~~~~~~ 473 (474)
+++|++++++
T Consensus 361 ~~~l~~~~~~ 370 (392)
T 2z9v_A 361 LTALGGAMNA 370 (392)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=218.90 Aligned_cols=329 Identities=15% Similarity=0.128 Sum_probs=219.1
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCCC---CCeEEEeCCHHHHHHHHHHHhH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~~---~~~v~~~~sGseA~~~al~~ar 176 (474)
++||..| +++ .+|+|++++.+++. ..++. ......++.++++++++. .+++++++||++|++.+++.+
T Consensus 5 ~~~~~~g----p~~-~~~~v~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~- 76 (366)
T 1m32_A 5 YLLLTPG----PLT-TSRTVKEAMLFDSC--TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA- 76 (366)
T ss_dssp CEECSSS----SCC-CCHHHHHTTCCCCC--TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS-
T ss_pred cccccCC----CcC-CCHHHHHHHhhhhc--CCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh-
Confidence 5676666 333 78999999887531 11110 114456777777777752 247999999999999999964
Q ss_pred hhcCCcEEEEEeCCCCCCc-hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 177 AFTGRERIIKFEGCYHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~-~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
..++++||++++.||+.. .......|..+...+... . ...|+++|++.+++++ ++++|++..+
T Consensus 77 -~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~-------------~~~d~~~l~~~l~~~~-~~~~v~~~~~ 140 (366)
T 1m32_A 77 -LGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE-V-------------ARPDVQAIDAILNADP-TISHIAMVHS 140 (366)
T ss_dssp -CCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT-T-------------SCCCHHHHHHHHHHCT-TCCEEEEESE
T ss_pred -cCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC-C-------------CCCCHHHHHHHHhcCC-CeEEEEEecc
Confidence 235567888888888753 233333454332221110 0 1238999999998642 4567777777
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME 333 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~ 333 (474)
++++|.+.+ +++|.++|++||++||+||+|+..... ..... ..+|++ +++|+++++.++|++++++++++
T Consensus 141 ~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~--~~~~~--~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~ 212 (366)
T 1m32_A 141 ETTTGMLNP----IDEVGALAHRYGKTYIVDAMSSFGGIP--MDIAA--LHIDYLISSANKCIQGVPGFAFVIAREQKLA 212 (366)
T ss_dssp ETTTTEECC----HHHHHHHHHHHTCEEEEECTTTTTTSC--CCTTT--TTCSEEEEESSSTTCCCSSEEEEEEEHHHHT
T ss_pred cCCcceecC----HHHHHHHHHHcCCEEEEECCccccCcC--ccccc--cCccEEEecCcccccCCCceEEEEECHHHHH
Confidence 778999998 999999999999999999999632211 11111 236766 68899976667899999999988
Q ss_pred hhcCCCCccc---------------ccCCCCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCe
Q 011959 334 MVAPAGPMYQ---------------AGTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHA 394 (474)
Q Consensus 334 ~~~~~~~~~~---------------~~t~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (474)
.+......+. ...++.|+++++++.++|+.+.+. ...++++++.+++.+.|+++ ...+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--~~~~~ 290 (366)
T 1m32_A 213 ACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL--GFNTL 290 (366)
T ss_dssp TCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT--TCCBS
T ss_pred hhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC--CCeec
Confidence 7764211110 013577888888888999876543 36777788888888888765 22221
Q ss_pred eEE-eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---CcceEEecC--CcHHHHHHHHHHHH
Q 011959 395 ICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSLA--HSSDDIQHTITAAE 468 (474)
Q Consensus 395 ~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~~~~~~--~t~e~i~~~l~~l~ 468 (474)
... ...+.++++.+.... .....++.+.|.++||++.++. ...+|+++. ++++++++++++|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 359 (366)
T 1m32_A 291 LDDELHSPIITAFYSPEDP-----------QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIR 359 (366)
T ss_dssp SCGGGBCSSEEEEECCCCT-----------TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHH
T ss_pred cCchhcCceEEEEEcCccC-----------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHH
Confidence 110 124557777764200 0012578889999999998763 346777644 58999999999999
Q ss_pred HHHhhC
Q 011959 469 KVLRQI 474 (474)
Q Consensus 469 ~~~~~~ 474 (474)
++++++
T Consensus 360 ~~~~~~ 365 (366)
T 1m32_A 360 TAMYWT 365 (366)
T ss_dssp HHCTTC
T ss_pred HHHHhc
Confidence 987653
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-25 Score=217.33 Aligned_cols=321 Identities=17% Similarity=0.087 Sum_probs=199.0
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~ 178 (474)
..+|||.++ +.++.+|+|++++.+++........+.+...+++++++++++..+.+++++||++|++.+++. +
T Consensus 7 ~~~id~~~~----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~---~ 79 (356)
T 1v72_A 7 PPALGFSSD----NIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSA---M 79 (356)
T ss_dssp CCCCBCSCG----GGCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHT---S
T ss_pred CceEeeccC----CccCCCHHHHHHHHhhccCcccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHH---h
Confidence 468898875 346789999999998863211112246788999999999886333589999999999999995 3
Q ss_pred cCCcEEEEEeCCCCCCchhH--HHhc--CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHH-HHhcC----CCCeEE
Q 011959 179 TGRERIIKFEGCYHGHADPF--LVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENN----KGEIAA 249 (474)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~--~~~~--g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~-~l~~~----~~~~a~ 249 (474)
.++++.|+....+|+..... +... |..+..++.. .+ .-|+++|++ .+++. ++++++
T Consensus 80 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~-------------~~d~~~l~~~~i~~~~~~~~~~~~~ 144 (356)
T 1v72_A 80 TPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AA-------------KLDIVRLRERTREKVGDVHTTQPAC 144 (356)
T ss_dssp CCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GG-------------CCCHHHHHHHTTSSTTCTTSCEEEE
T ss_pred cCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC--CC-------------eEcHHHHHHHhhhcchhhccCCceE
Confidence 34444444445555433322 3333 4432221110 00 118999999 88742 236889
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c--cCCCccccccC--CCCcee--ehhhhcCCCcce
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAYGGAQEYFG--VTPDLT--TLGKIIGGGLPV 322 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r--~g~~~~~~~~g--~~pdi~--t~sK~l~~G~~i 322 (474)
|++++++ ++|.+. +.+++++|+++|++||++||+||+|..+ . .+.. ...++ ...|++ +++|+ |.|+
T Consensus 145 v~~~~~~-~tG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g~~~ 217 (356)
T 1v72_A 145 VSITQAT-EVGSIY-TLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---GVLA 217 (356)
T ss_dssp EEEESSC-TTSCCC-CHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---TCSS
T ss_pred EEEEcCC-CCCccC-CHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---CCcC
Confidence 9999865 588765 4566999999999999999999999643 1 1211 11121 134554 58898 3366
Q ss_pred E--EEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 323 G--AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 323 G--~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
| ++++++++++.+.... ...++... .++.++.++++.++++ ++.++++++.+++++.|+++ .++....
T Consensus 218 G~g~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~ 290 (356)
T 1v72_A 218 AEAIVLFNTSLATEMSYRR--KRAGHLSS--KMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL---GGVEVLG 290 (356)
T ss_dssp CEEEEESSGGGHHHHHHHH--HHTTCCCS--STHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC---TTEEEES
T ss_pred ccEEEEECHHHHhhHHHHh--hccCchhh--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC---CCcEEcc
Confidence 6 7778999887765210 11122111 1233344455555542 23445555566666555432 1222222
Q ss_pred eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+..+.++++.+. .++.+.|.++||.+.++. ...+|++ ..+|++++++++++|++++++
T Consensus 291 ~~~~~~~~~~~~------------------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 291 GTEANILFCRLD------------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp CCCSSEEEEEEC------------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred CCCccEEEEEcC------------------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 344556665541 257888899999998654 2457775 567999999999999987654
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=226.35 Aligned_cols=314 Identities=14% Similarity=0.108 Sum_probs=212.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CC--CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCC
Q 011959 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~--~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (474)
.+|++++++.+++.... .....+...++.++++++++ .. +++++++||++|++ +++. ...++++|++.+++||
T Consensus 13 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~--~~~~gd~vi~~~~~~~ 88 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGFT-SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTS--LLKPNDKILVVSNGVF 88 (384)
T ss_dssp CCHHHHHHTTCCSCCTT-SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGG--GCCTTCEEEEECSSHH
T ss_pred CCHHHHHHhhccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHh--hcCCCCEEEEecCCcc
Confidence 47889888877653211 11124567788888988886 34 78999999999999 8874 3456788999999998
Q ss_pred CCchhHH-HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHH
Q 011959 193 GHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (474)
Q Consensus 193 g~~~~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (474)
+.....+ ...|..+..++.... + ..|+++|++.++++ ++++|++++++|++|.+.+ +++
T Consensus 89 ~~~~~~~~~~~g~~~~~v~~~~~-~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~ 148 (384)
T 3zrp_A 89 GDRWEQIFKRYPVNVKVLRPSPG-D-------------YVKPGEVEEEVRKS--EYKLVALTHVETSTGVREP----VKD 148 (384)
T ss_dssp HHHHHHHHTTSSCEEEEECCSTT-C-------------CCCHHHHHHHHHHS--CEEEEEEESEETTTTEECC----HHH
T ss_pred hHHHHHHHHHcCCcEEEecCCCC-C-------------CCCHHHHHHHHHhC--CCcEEEEeCCCCCCceECc----HHH
Confidence 8432222 222332222111110 0 01899999999863 5889999999999999998 999
Q ss_pred HHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhh-cCCC---------
Q 011959 272 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMV-APAG--------- 339 (474)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~-~~~~--------- 339 (474)
|.++|++||++||+||+|+.... ......+ .+|++ +++|+++++.++|++++++++++.+ .+..
T Consensus 149 i~~l~~~~~~~li~D~a~~~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (384)
T 3zrp_A 149 VINKIRKYVELIVVDGVSSVGAE--EVKAEEW--NVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLR 224 (384)
T ss_dssp HHHHHGGGEEEEEEECTTTTTTS--CCCTTTT--TCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHH
T ss_pred HHHHHHhcCCEEEEECcccccCc--ccccccc--CCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHH
Confidence 99999999999999999962211 1111222 35665 5779998777799999999998877 2100
Q ss_pred Ccc---------cccCC-CCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE--EeeeceeE
Q 011959 340 PMY---------QAGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC--GGYISGMF 404 (474)
Q Consensus 340 ~~~---------~~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--v~~~g~~~ 404 (474)
... ....+ +.+...+++..++++.+.+ +++.++++++.+++.+.|+++ ...+... ....+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~ 302 (384)
T 3zrp_A 225 NWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL--GLEIVARRPESYSNTVT 302 (384)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSCSSGGGBCSSEE
T ss_pred HHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC--CCeEccCcccccCccEE
Confidence 000 11122 4566677777788877654 467777888888888888775 2221111 11235566
Q ss_pred EEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC---cceEEec--CCcHHHHHHHHHHHHHHHhh
Q 011959 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAGFTSL--AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~~~~--~~t~e~i~~~l~~l~~~~~~ 473 (474)
++.+... ...++.+.|.++||.+.++.. ..+|+++ .+|++++++++++|++++++
T Consensus 303 ~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~ 362 (384)
T 3zrp_A 303 GVILKVA--------------DPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRK 362 (384)
T ss_dssp EEECSSS--------------CHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCC--------------CHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence 6665321 125788999999999987652 4577764 47999999999999998864
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=230.46 Aligned_cols=349 Identities=13% Similarity=0.051 Sum_probs=212.0
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar 176 (474)
.|+.||||.+++++ +.|.+++.+++..+.....+.....+|++++++++ +.++++|++||++|++.+++.++
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~-~~~~v~~t~ggt~A~~~al~~~~ 112 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELF-NYDYIIPAHQGRGAENILFPVLL 112 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCCCSSSCHHHHHHHHHHHHHH-CCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhcccccccCccHHHHHHHHHHHc-CCCcEEEcCCcHHHHHHHHHHHH
Confidence 36789999887543 78888888887765432234566778888888888 56899999999999999999875
Q ss_pred hh---cCCcE---EEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC---CCHHHHHHHHhcCC-CC
Q 011959 177 AF---TGRER---IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNK-GE 246 (474)
Q Consensus 177 ~~---~~~~~---ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~---~d~~~le~~l~~~~-~~ 246 (474)
.+ ++ +. ||+. ..+|+.+...+...|..+....... .++. ....++ .|+++|++++++++ ++
T Consensus 113 ~~~~~~G-d~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~-----~~~~~~~~~~d~~~le~~i~~~~~~~ 183 (467)
T 1ax4_A 113 KYKQKEG-KAKNPVFIS-NFHFDTTAAHVELNGCKAINIVTEK--AFDS-----ETYDDWKGDFDIKKLKENIAQHGADN 183 (467)
T ss_dssp HHHHHTT-CCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBCGG--GGCT-----TSCCTTTTCBCHHHHHHHHHHHCGGG
T ss_pred HhhccCC-CccceEEEe-ccccchhhHHHhccCCceecccccc--cccc-----cccCCcccccCHHHHHHHHHhcCCCC
Confidence 43 44 33 6655 3333544555555554332211100 0000 000112 28999999997532 36
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--cc------cCCCc-cccccC----CCCcee--e
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG--FR------LAYGG-AQEYFG----VTPDLT--T 311 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~r------~g~~~-~~~~~g----~~pdi~--t 311 (474)
+++|++++++|++|...++.+++++|+++|++||++||+||++.. .. .+..+ ....++ ..+|++ +
T Consensus 184 ~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s 263 (467)
T 1ax4_A 184 IVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMS 263 (467)
T ss_dssp EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEE
T ss_pred eeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEe
Confidence 899999999998855566677799999999999999999998742 10 01110 000000 124554 6
Q ss_pred hhhhcCCCcceE-EEEec-H-HHHHhhcCCCCc-ccccCCCCChHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 011959 312 LGKIIGGGLPVG-AYGGR-R-DIMEMVAPAGPM-YQAGTLSGNPLAMTAGI-HTLKRLKEPGTYEYLNKITGELTQGIID 386 (474)
Q Consensus 312 ~sK~l~~G~~iG-~~~~~-~-~i~~~~~~~~~~-~~~~t~~~~~~~~aaa~-aal~~~~~~~~~~~~~~~~~~l~~~L~~ 386 (474)
++|+++ +|+| +++++ + ++++.+...... ....++++++..+.++. ++|+.+.+++..++..++++++++.|++
T Consensus 264 ~sK~~g--~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 341 (467)
T 1ax4_A 264 AKKDPL--LNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLRE 341 (467)
T ss_dssp TTSTTC--CSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCC--CCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 788775 4655 45566 6 787766421111 11224555555444333 3566554334566666778888888876
Q ss_pred HhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH-HHCCeEeccc-----------C------Ccc
Q 011959 387 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPS-----------Q------FEA 448 (474)
Q Consensus 387 ~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~-----------~------~~~ 448 (474)
. .+.+. .+..|.++++.+.. -..++. .......++.+.| .++||.+.+. + ...
T Consensus 342 ~--~~~~~--~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~ 412 (467)
T 1ax4_A 342 A--GIPIQ--YPTGGHAVFVDCKK-LVPQIP----GDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEF 412 (467)
T ss_dssp T--TCCBC--SSCCSSEEEEESTT-TCTTSC----GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCE
T ss_pred C--CCCcc--cCCCceEEEEehhh-hccccc----cCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccce
Confidence 2 23222 23345555655211 000000 0111235688888 7899999872 1 135
Q ss_pred eEEecC---CcHHHHHHHHHHHHHHHhh
Q 011959 449 GFTSLA---HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 449 ~~~~~~---~t~e~i~~~l~~l~~~~~~ 473 (474)
+|+++. +|++++++++++|++++++
T Consensus 413 iRls~~~~~~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 413 MRLTIARRVYTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp EEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred EEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 677654 7999999999999987753
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=237.02 Aligned_cols=353 Identities=12% Similarity=0.027 Sum_probs=212.0
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHhh----CC--CCCeEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISA----VP--SIEMVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~la~~l~~~----~~--~~~~v~~~~sGseA~ 168 (474)
|.+|++...+++.+..++.+|++++++.+++.....+ .+..+++.++++++.+. .+ ..+++++|+||++|+
T Consensus 98 g~~~~~~~i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al 177 (533)
T 3f6t_A 98 EDKFLIDAVNYCHTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAI 177 (533)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHH
T ss_pred cccccHhheeccCCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHH
Confidence 3355554445555666777899999988888653211 23457888899988766 22 147999999999999
Q ss_pred HHHHHHh--Hhhc-CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCC--CCCCCCCCCCceEEccCCCHHHHHHHHhcC
Q 011959 169 MGVLRLA--RAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENN 243 (474)
Q Consensus 169 ~~al~~a--r~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~--~~g~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (474)
..+++.. +.+. .++.|++.+++|+++...+. ..|..+...+... ... ..+ |+++|++.++
T Consensus 178 ~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~-~~g~~~~~v~~~~~~~~~---------~~~---d~~~l~~~l~-- 242 (533)
T 3f6t_A 178 VYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPE-LKDYELVEVDLHSYEKND---------WEI---EPNEIEKLKD-- 242 (533)
T ss_dssp HHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGG-GGGSEEEEECCCEETTTT---------SEE---CHHHHHHHSC--
T ss_pred HHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHH-HcCCeEEEEEecCCcccC---------CCC---CHHHHHHHhC--
Confidence 9999841 1133 45788888888887543332 2232222111110 000 000 7899999885
Q ss_pred CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH-HhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcC-CCc
Q 011959 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK-ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGL 320 (474)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~-~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~-~G~ 320 (474)
+++++|+++.++|++|.+.+.++ +++|.++|+ +||++||+||+|.+| ...........+....+.||||.+| .|+
T Consensus 243 -~~~k~v~l~~p~NPtG~~~~~~~-l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 320 (533)
T 3f6t_A 243 -PSIKALIVVNPTNPTSKEFDTNA-LNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGW 320 (533)
T ss_dssp -TTEEEEEEESSCTTTCBCCCHHH-HHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGG
T ss_pred -CCCeEEEEeCCCCCCccccCHHH-HHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCccc
Confidence 36788887777788898876555 999999999 589999999999988 4322211111222344558999998 799
Q ss_pred ceEEEEecHH-----HHHhhcC-----------------------------CCCcccccCCCCChHHHHH----HHHHHH
Q 011959 321 PVGAYGGRRD-----IMEMVAP-----------------------------AGPMYQAGTLSGNPLAMTA----GIHTLK 362 (474)
Q Consensus 321 ~iG~~~~~~~-----i~~~~~~-----------------------------~~~~~~~~t~~~~~~~~aa----a~aal~ 362 (474)
|+||++++++ +++.+.+ ........+.+.+++.+.+ ++++|.
T Consensus 321 RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~ 400 (533)
T 3f6t_A 321 RLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLL 400 (533)
T ss_dssp CEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHh
Confidence 9999998876 4443210 0122234455667777766 344442
Q ss_pred ------HhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCC----CcCcccccccchHHHHHH
Q 011959 363 ------RLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP----VYNFEDAKKSETTKFARF 430 (474)
Q Consensus 363 ------~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~ 430 (474)
...+ +...++++++.+.+.+.|. .++....+..|.++++.+.... ...+..... ......++
T Consensus 401 ~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-----~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~-~~~~~~~~ 474 (533)
T 3f6t_A 401 TSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-----APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLT-NNFEQVDF 474 (533)
T ss_dssp TCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-----CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHH-HHCCHHHH
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHhcC-----CCccccCCCceEEEEEehHhhhhhccchHHHHHhh-ccCCHHHH
Confidence 0100 2334444444555544442 3333223345566666553100 000000000 00011244
Q ss_pred HHHH-HHCCeEecccC-----CcceEEecC-CcHHHHHHHHHHHHHHHhh
Q 011959 431 YRGM-LEEGVYFAPSQ-----FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 431 ~~~l-~~~Gv~v~~~~-----~~~~~~~~~-~t~e~i~~~l~~l~~~~~~ 473 (474)
...+ .++||++.|+. .+.+|+++. ++++++++++++|.+++++
T Consensus 475 ~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~ 524 (533)
T 3f6t_A 475 LLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKE 524 (533)
T ss_dssp HHHHHHHTTSSSCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHH
Confidence 4444 47899998863 346789887 5999999999999998865
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=223.11 Aligned_cols=316 Identities=12% Similarity=0.047 Sum_probs=205.2
Q ss_pred CCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC-CC--CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCC
Q 011959 116 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 191 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~-~~--~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (474)
.+|+|++++.+++.. .++ ...+...+++++++++++ .. +.+++++||++|++.+++.. ..++++||+.+++|
T Consensus 30 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~--~~~gd~vi~~~~~~ 105 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FRTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNC--FTKKDKVLVIDGGS 105 (376)
T ss_dssp CCHHHHHHHTSCCCC--CSSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHH--CCTTCCEEEEESSH
T ss_pred CcHHHHHHhcCCCCC--CCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhc--cCCCCeEEEEeCCh
Confidence 478888888775522 111 112556788888888875 22 34555899999999999953 35678899999888
Q ss_pred CCCchh-HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHH
Q 011959 192 HGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (474)
Q Consensus 192 hg~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (474)
|+.... .....|..+..++.+.... .|+++|++.+. +++++|++++++|++|.+.+ ++
T Consensus 106 ~~~~~~~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~ 164 (376)
T 3f0h_A 106 FGHRFVQLCEIHEIPYVALKLEHGKK--------------LTKEKLYEYDN---QNFTGLLVNVDETSTAVLYD----TM 164 (376)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTCC--------------CCHHHHHTTTT---SCCCEEEEESEETTTTEECC----HH
T ss_pred hhHHHHHHHHHcCCceEEEeCCCCCC--------------CCHHHHHHhhc---cCceEEEEecccCCcceecC----HH
Confidence 884432 1222343322211111111 17899988664 36788999988899999998 99
Q ss_pred HHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCC-cc------
Q 011959 271 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP-MY------ 342 (474)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~-~~------ 342 (474)
+|+++|++||++||+||+|+.+ +. +..+.+++...+.+++|+++++.++|++++++++++.+..... .+
T Consensus 165 ~i~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (376)
T 3f0h_A 165 MIGEFCKKNNMFFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKD 241 (376)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHH
T ss_pred HHHHHHHHcCCEEEEEcCccccCcc---ccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHH
Confidence 9999999999999999999754 32 2334456555556788999866678999999999888764211 00
Q ss_pred -------cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-eeceeEEEEEecCCCc
Q 011959 343 -------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVY 414 (474)
Q Consensus 343 -------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~ 414 (474)
....++.+..+++++.++++.+.+.+..+++.++.+.+++.|.+.+.+.++..... ....++.+.. .
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~---- 316 (376)
T 3f0h_A 242 ALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHP-T---- 316 (376)
T ss_dssp HHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEE-S----
T ss_pred HHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeC-C----
Confidence 01233445555577778888766543445555555555555555544444221111 1222222221 1
Q ss_pred CcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEec--CCcHHHHHHHHHHHHHHHhh
Q 011959 415 NFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL--AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~~--~~t~e~i~~~l~~l~~~~~~ 473 (474)
.....++.+.|.++ ||.+.++. ...+|+++ .+|++++++++++|++++++
T Consensus 317 ---------~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 317 ---------TANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp ---------SSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred ---------CCCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 01135788889988 99998763 34578864 67999999999999998864
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-24 Score=214.08 Aligned_cols=322 Identities=13% Similarity=0.076 Sum_probs=213.0
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CCC-C-----CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG-A-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~-~-----~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~ 168 (474)
+..|+|+.++. ..+|+|++++.+++.+.. ..+ + ..+...++.++++++++ ..++++|++||++++
T Consensus 26 ~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al 99 (406)
T 3cai_A 26 GWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLL 99 (406)
T ss_dssp SCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHH
T ss_pred CeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHH
Confidence 46788877651 478999999999997632 111 1 13556788888888886 357899999999999
Q ss_pred HHHHHHh-HhhcCCcEEEEEeCCCCCCchhHHHh---cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC
Q 011959 169 MGVLRLA-RAFTGRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (474)
Q Consensus 169 ~~al~~a-r~~~~~~~ii~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (474)
+.+++.. +...++++||+.+++|++........ .|..+..++.....+. -|+++|++.++
T Consensus 100 ~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~-------------~d~~~l~~~l~--- 163 (406)
T 3cai_A 100 SLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGE-------------LPTWQWESLIS--- 163 (406)
T ss_dssp HHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCC-------------CCGGGHHHHCC---
T ss_pred HHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCC-------------cCHHHHHHHhC---
Confidence 9998842 12456678999888888765544332 3433322211100110 17889998886
Q ss_pred CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcce
Q 011959 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPV 322 (474)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~i 322 (474)
+++++|++++++|++|.+.+ +++|.++|++||++||+||+|+.-.. ......++ +|++ +++|.+|++ +
T Consensus 164 ~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~g~~--~~~~~~~~--~d~~~~s~~K~~g~~--~ 233 (406)
T 3cai_A 164 KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAAAPYR--LLDIRETD--ADVVTVNAHAWGGPP--I 233 (406)
T ss_dssp TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTTTTTC--CCCHHHHC--CSEEEEEGGGGTSCS--C
T ss_pred CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccccCCC--CCCchhcC--CCEEEeehhhhcCCC--c
Confidence 36889999999999999998 88999999999999999999962111 12222334 5665 688987654 9
Q ss_pred E-EEEecHHHHHhhcCCCCcc------cccCCCCChHHHHHHHHHHHHhcCC-----------------CHHHHHHHHHH
Q 011959 323 G-AYGGRRDIMEMVAPAGPMY------QAGTLSGNPLAMTAGIHTLKRLKEP-----------------GTYEYLNKITG 378 (474)
Q Consensus 323 G-~~~~~~~i~~~~~~~~~~~------~~~t~~~~~~~~aaa~aal~~~~~~-----------------~~~~~~~~~~~ 378 (474)
| ++++++++++.+.+....+ .....+.|+.+++++.++++.+.+. ++.++++++.+
T Consensus 234 G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (406)
T 3cai_A 234 GAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFD 313 (406)
T ss_dssp EEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 9 9999999988776421100 0113346777887888888877642 23344445555
Q ss_pred HHHHHHHHHhhhcCCeeEEe---eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------
Q 011959 379 ELTQGIIDAGKKAGHAICGG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------- 445 (474)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------- 445 (474)
++.+.|++ .+...... ..+.++++.+... ...++.+.|.++||.+.++.
T Consensus 314 ~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~ 375 (406)
T 3cai_A 314 YLMVSLRS----LPLVMLIGRPEAQIPVVSFAVHKV--------------PADRVVQRLADNGILAIANTGSRVLDVLGV 375 (406)
T ss_dssp HHHHHHHT----CTTEEECCCCSSBCSEEEEEETTB--------------CHHHHHHHHHHTTEECEECCSCHHHHHHTT
T ss_pred HHHHHHhc----CCCeEEcCCccccCCEEEEEECCc--------------CHHHHHHHHHHCCcEEecCChHHHHHHcCC
Confidence 55555544 32111111 1344666665311 12567888889999998753
Q ss_pred ---CcceEEecC--CcHHHHHHHHHHHHH
Q 011959 446 ---FEAGFTSLA--HSSDDIQHTITAAEK 469 (474)
Q Consensus 446 ---~~~~~~~~~--~t~e~i~~~l~~l~~ 469 (474)
...+|+++. .|++++++++++|++
T Consensus 376 ~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 376 NDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp TTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 246788654 489999999999875
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=221.34 Aligned_cols=332 Identities=15% Similarity=0.131 Sum_probs=218.1
Q ss_pred EEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHH
Q 011959 92 HMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171 (474)
Q Consensus 92 ~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~a 171 (474)
.++|.+++.+.++...++...++|..++..+.+. ++++++++.++..+.++|++||++|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~-----------------~~~~~l~~~~~~~~~v~~~~sgt~a~~~~ 67 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVMN-----------------DLLSNLKTVYNAEAAVIIPGSGTYGMEAV 67 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHHHH-----------------HHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHHHH-----------------HHHHHHHHHhCCCCEEEEcCChhHHHHHH
Confidence 4678999999998877766677887776654332 34444555554336788999999999999
Q ss_pred HHHhHhhcCCcEEEEEeCCCCCCchhHHHh-cCCC--CccCCCCCC--CCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 172 LRLARAFTGRERIIKFEGCYHGHADPFLVK-AGSG--VATLGLPDS--PGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~-~g~~--~~~~~~~~~--~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
++ .+.++++||+++++||+.....+.. .|.+ +..++.+.. .... ..+...|++++++.++++ +
T Consensus 68 ~~---~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~-------~~~~~~d~~~l~~~i~~~--~ 135 (379)
T 3ke3_A 68 AR---QLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAP-------KPFAPVDIETAVAKIKED--K 135 (379)
T ss_dssp HH---HHCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSC-------CCEECCCHHHHHHHHHHH--T
T ss_pred HH---hCCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEecccccccccc-------CCCCCCCHHHHHHHHhhc--C
Confidence 87 4567889999999999865433322 2321 111111000 0000 001124899999999642 4
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEE
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYG 326 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~ 326 (474)
+++|++..+++++|.+.| .+++++|+++|++||++||+||+++| +..+..+.++++..+.+++|+++++.++|+++
T Consensus 136 ~~~v~~~~~~~~~G~~~~-~~~l~~i~~~~~~~~~~li~D~~~~g---~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~ 211 (379)
T 3ke3_A 136 SAIVYAPHVETSSGIILS-EEYIKALSEAVHSVGGLLVIDCIASG---CVWLDMKELGIDVLISAPQKGWSSTPCAGLVM 211 (379)
T ss_dssp CSEEEEESEETTTTEECC-HHHHHHHHHHHHHTTCEEEEECTTCT---TCCCCHHHHTCSEEEECTTTTTCSCCCEEEEE
T ss_pred CcEEEEEeecCCCceeCC-HHHHHHHHHHHHHcCCEEEEEecccC---CccccccccCCCEEEecchhhcCCCCceEEEE
Confidence 677888888888887765 56799999999999999999999972 33445556677666667889998766799999
Q ss_pred ecHHHHHhhcCCC--Cccc-----------------ccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Q 011959 327 GRRDIMEMVAPAG--PMYQ-----------------AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGI 384 (474)
Q Consensus 327 ~~~~i~~~~~~~~--~~~~-----------------~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L 384 (474)
+++++++.+.+.. ..+. ..+++.|+.++++..++|+.+.+ ++..++.+++.+++++.|
T Consensus 212 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l 291 (379)
T 3ke3_A 212 LSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVL 291 (379)
T ss_dssp ECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 9999988886421 1111 01236678888888899988765 356677777888888888
Q ss_pred HHHhhhcCCeeEEee-eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---------CcceEEec-
Q 011959 385 IDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFTSL- 453 (474)
Q Consensus 385 ~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------~~~~~~~~- 453 (474)
+++. ..+...... .+.+..+... +. . ..+.+.|.++||++.++. ...+|+++
T Consensus 292 ~~~g--~~~~~~~~~~~~~i~~~~~~-------------~~-~-~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~ 354 (379)
T 3ke3_A 292 TDKG--IESVAAEGFEAPGVVVSYTE-------------RD-D-MHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLF 354 (379)
T ss_dssp HHTT--CCBSBCTTCBCSSEEEEECS-------------CH-H-HHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECC
T ss_pred HHcC--CEecCCccccCceEEEEccC-------------Cc-c-hHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCC
Confidence 7652 111111000 1112222211 11 1 123567889999988764 34567754
Q ss_pred -CCcHHHHHHHHHHHHHHHhh
Q 011959 454 -AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 -~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+|++||++++++|++++++
T Consensus 355 ~~~t~~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 355 GLDKLTDIDGTVERFEKALDE 375 (379)
T ss_dssp SHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999998875
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-25 Score=218.18 Aligned_cols=323 Identities=13% Similarity=0.037 Sum_probs=205.9
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhc
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT 179 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~ 179 (474)
+++|.++ ..|+.+|++++++.+++.......+..+.+.+++++++++++ ..+++++++||++|++.+++.+ ..
T Consensus 15 ~i~l~~~----~~~~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~--~~ 88 (359)
T 1svv_A 15 PYSFVND----YSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLA--LR 88 (359)
T ss_dssp CEECSCS----CSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHH--CC
T ss_pred eEEecCC----CcCCCCHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHH--hC
Confidence 5566543 456789999999999886532233467889999999999886 5678999999999999999964 23
Q ss_pred CCcEEEEEeCCCCCCchh-HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC----CCCeEEEEEcc
Q 011959 180 GRERIIKFEGCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN----KGEIAAIILEP 254 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~----~~~~a~vi~ep 254 (474)
++++|++.+++||+.... .+...|..+..++.. .+. -|+++|++.++++ +.++++|++++
T Consensus 89 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~-------------~d~~~l~~~l~~~~~~~~~~~~~v~~~~ 153 (359)
T 1svv_A 89 PWEAVIATQLGHISTHETGAIEATGHKVVTAPCP--DGK-------------LRVADIESALHENRSEHMVIPKLVYISN 153 (359)
T ss_dssp TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT--TSC-------------CCHHHHHHHHHHSCSTTSCEEEEEEEES
T ss_pred CCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC--CCe-------------ecHHHHHHHHHHHHhccCCCceEEEEEc
Confidence 567888889999886553 233334332221111 000 1699999998753 12478888887
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC-CccccccC--CCCceee--hhhhcCCCcceEEEEecH
Q 011959 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFG--VTPDLTT--LGKIIGGGLPVGAYGGRR 329 (474)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g--~~pdi~t--~sK~l~~G~~iG~~~~~~ 329 (474)
+ +++|.+.+ .+++++|+++|++||++||+||+|.+|..+. ......++ ..+|+++ .+|. ++...+|++++++
T Consensus 154 ~-~ptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~~~~ 230 (359)
T 1svv_A 154 T-TEVGTQYT-KQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFGEALIILND 230 (359)
T ss_dssp S-CTTSCCCC-HHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEECSG
T ss_pred C-CCCceecC-HHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCCceEEEEEcc
Confidence 7 57888776 5679999999999999999999996651111 11111111 2356654 5785 3335679999999
Q ss_pred HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEE
Q 011959 330 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (474)
Q Consensus 330 ~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (474)
++++.+.... .....+++.+....++..+. +++ +++.++++++++++.+.| +. ....+. .+..+.++++
T Consensus 231 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~l~~~L-~~-~~~~~~--~~~~~~~~~~ 302 (359)
T 1svv_A 231 ALKPNARHLI-KQRGALMAKGWLLGIQFEVL---MKDNLFFELGAHSNKMAAILKAGL-EA-CGIRLA--WPSASNQLFP 302 (359)
T ss_dssp GGCTTHHHHH-HHTTCCCTTTHHHHHHHHHH---TSTTHHHHHHHHHHHHHHHHHHHH-HH-TTCCBS--SCCSSSEECB
T ss_pred cHHHHHHHHH-hcCCcccccchhhHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHh-cc-CCeEEc--cCCccceEEE
Confidence 8877665210 01222333233333332222 333 345666777777777777 32 122211 1223444443
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHC-CeEeccc---CCcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPS---QFEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~---~~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+. .++.+.|+++ ||++.+. +...+|++ +.++++++++++++|++++++
T Consensus 303 ~~~------------------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 303 ILE------------------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp EEE------------------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred EcC------------------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 331 3678889998 9988432 23456774 567999999999999998765
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=225.00 Aligned_cols=326 Identities=12% Similarity=0.093 Sum_probs=210.9
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHh--cCCCC---C--CCH---HHHHH-HHHHHhhCCCCCeEEEeCCHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTSFG---A--PCL---LENVL-AEMVISAVPSIEMVRFVNSGTEA 167 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~--~~~~~---~--~~~---~~~~l-a~~l~~~~~~~~~v~~~~sGseA 167 (474)
++|||+.++. +++ +|+|++++.+++.+ ...+. + ... ..+++ .++++++++.....++++||++|
T Consensus 23 ~~~i~~~~~~--~~~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a 97 (407)
T 2dkj_A 23 REGLELIASE--NFV---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQA 97 (407)
T ss_dssp HTSEECCTTC--CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred hcceeeccCC--CCC---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHH
Confidence 4678888875 344 89999999999864 22121 0 111 22222 24777777432333667789999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCc--hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCC
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHA--DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~--~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (474)
++.+++.+ ..++++|++.+++|++.. ...+...|..+.....+..+. ....|+++|++.+++.
T Consensus 98 ~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~-- 162 (407)
T 2dkj_A 98 NMAVYMAL--MEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPD-----------TELIDLEEVRRLALEH-- 162 (407)
T ss_dssp HHHHHHHH--CCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTT-----------TSSCCHHHHHHHHHHH--
T ss_pred HHHHHHHh--cCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcc-----------cCccCHHHHHHHHhhc--
Confidence 99999964 456678999999988763 122222222111110100000 0013899999998742
Q ss_pred CeEEEEE-ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC-c-ccCCCccccccCCCCcee--ehhhhcCCCc
Q 011959 246 EIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-F-RLAYGGAQEYFGVTPDLT--TLGKIIGGGL 320 (474)
Q Consensus 246 ~~a~vi~-ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g-~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~ 320 (474)
++++|++ +|+++ .+.+ +++|.++|++||++||+||+|++ + ..+.... .++ .+|++ ++||+++ |+
T Consensus 163 ~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l~-g~ 231 (407)
T 2dkj_A 163 RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP-YAHVVTSTTHKTLR-GP 231 (407)
T ss_dssp CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT-TCSEEEEESSGGGC-CC
T ss_pred CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc-cccEEEEeccccCC-CC
Confidence 4567777 56553 4555 99999999999999999999975 6 4443221 112 26776 7999887 66
Q ss_pred ceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE
Q 011959 321 PVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (474)
Q Consensus 321 ~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (474)
++|+++++ +++++.+... ...+.+.+.++..++++.++|+.+.+ +++.++++++.+++.+.|++. ++...
T Consensus 232 ~~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~ 305 (407)
T 2dkj_A 232 RGGLILSNDPELGKRIDKL--IFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR----GYRIV 305 (407)
T ss_dssp SCEEEEESCHHHHHHHHHH--HTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEG
T ss_pred CceEEEECCHHHHHHHHhh--hcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC----Cceee
Confidence 88999999 8998877631 11233445567777777888887643 566777788888888888764 32211
Q ss_pred E-eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------CcceEEec------CCcHHH
Q 011959 397 G-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSL------AHSSDD 459 (474)
Q Consensus 397 v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------~~~~~~~~------~~t~e~ 459 (474)
. ++.|.++++.+.... .....+.+.|.++||++.++. ...+|+++ .+|+++
T Consensus 306 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~ 373 (407)
T 2dkj_A 306 TGGTDNHLFLVDLRPKG------------LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEE 373 (407)
T ss_dssp GGSCSSSEEEEECGGGT------------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGG
T ss_pred cCCCCceEEEEECcccC------------CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHH
Confidence 1 346788888774210 012567888899999998753 23467765 389999
Q ss_pred HHHHHHHHHHHHhh
Q 011959 460 IQHTITAAEKVLRQ 473 (474)
Q Consensus 460 i~~~l~~l~~~~~~ 473 (474)
+++++++|++++++
T Consensus 374 i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 374 MPLVAELIDRALLE 387 (407)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=224.13 Aligned_cols=316 Identities=14% Similarity=0.082 Sum_probs=212.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHhhCC-CCC-eEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCC
Q 011959 116 ADDQVLAALGETMKKGTSFGA--PCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 191 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~--~~~~~~~la~~l~~~~~-~~~-~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (474)
.+|+|++++.+++. .+.. ..+...+++++++++++ ..+ .+++++||++|++.+++.. ..++++|++.+++|
T Consensus 24 ~~~~v~~a~~~~~~---~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~--~~~gd~Vl~~~~~~ 98 (411)
T 3nnk_A 24 ADPRVLRAMSSQLI---GQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA--IRPGDKVLVPVFGR 98 (411)
T ss_dssp CCHHHHHHHTSCCC---CTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSH
T ss_pred CCHHHHHHhhcccc---ccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh--cCCCCEEEEecCCc
Confidence 47888888876531 1111 12456788888988886 333 4889999999999999963 56678999999999
Q ss_pred CCCc-hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHH
Q 011959 192 HGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (474)
Q Consensus 192 hg~~-~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (474)
|+.. ...+...|..+..++.... + .-|+++|++.++++ ++++|++++++|++|.+.+ ++
T Consensus 99 ~~~~~~~~~~~~g~~~~~v~~~~~-~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~ 158 (411)
T 3nnk_A 99 FGHLLCEIARRCRAEVHTIEVPWG-E-------------VFTPDQVEDAVKRI--RPRLLLTVQGDTSTTMLQP----LA 158 (411)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCTT-C-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CT
T ss_pred hHHHHHHHHHHcCCeEEEEecCCC-C-------------CCCHHHHHHHHhhC--CCeEEEEeCCCCCcceecc----HH
Confidence 8842 2222333432222111100 0 01899999999753 5788999999999999988 88
Q ss_pred HHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCC---Cc------
Q 011959 271 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG---PM------ 341 (474)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~---~~------ 341 (474)
+|+++|++||++||+||+|+.-. .......+++...+.+++|+++++.++|++++++++++.+.+.. +.
T Consensus 159 ~i~~l~~~~~~~li~Dea~~~~~--~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 236 (411)
T 3nnk_A 159 ELGEICRRYDALFYTDATASLGG--NPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAH 236 (411)
T ss_dssp THHHHHHHHTCEEEEECTTTBTT--BCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTC
T ss_pred HHHHHHHHcCCEEEEECCcccCC--cccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhccccccccccccc
Confidence 89999999999999999985211 11222333433334467799887778999999999988776422 00
Q ss_pred ------------------------ccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCe
Q 011959 342 ------------------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (474)
Q Consensus 342 ------------------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (474)
......+.|..+++++.++++.+.+ ++..++++++.+++.+.|+++. ..+.
T Consensus 237 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~ 314 (411)
T 3nnk_A 237 RDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMG--LETF 314 (411)
T ss_dssp CCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCBC
T ss_pred ccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC--CEeC
Confidence 0112235577888888888887654 3567778888888888887752 1111
Q ss_pred eE-EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEec---CCcHHHHHHHHH
Q 011959 395 IC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTIT 465 (474)
Q Consensus 395 ~~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~~---~~t~e~i~~~l~ 465 (474)
.. ....+.++++.+.+. ....++.+.|+++ ||.+.++. ...+|+++ ..|+++++++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~ 381 (411)
T 3nnk_A 315 GDLKHKMNNVLGVVIPQG-------------INGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLS 381 (411)
T ss_dssp SCGGGBCSSEEEEECCTT-------------CCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHH
T ss_pred CCcccccccEEEEECCCC-------------CCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHH
Confidence 10 112356666665321 1125778888876 99998752 23577765 458999999999
Q ss_pred HHHHHHhh
Q 011959 466 AAEKVLRQ 473 (474)
Q Consensus 466 ~l~~~~~~ 473 (474)
+|++++++
T Consensus 382 ~l~~~l~~ 389 (411)
T 3nnk_A 382 ALEAVLNY 389 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-25 Score=221.78 Aligned_cols=321 Identities=13% Similarity=0.020 Sum_probs=209.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCC-CCCeEE-EeCCHHHHHHHHHHHhHhhcCCcEEEE
Q 011959 112 IIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP-SIEMVR-FVNSGTEACMGVLRLARAFTGRERIIK 186 (474)
Q Consensus 112 ~lG~~~p~v~~a~~~~~~~~~~~~~---~~~~~~~la~~l~~~~~-~~~~v~-~~~sGseA~~~al~~ar~~~~~~~ii~ 186 (474)
+++++++.+.+++.+++.+.....+ ..+...+++++++++++ ..+.++ +++||++|++.+++.. ..++++|++
T Consensus 14 ~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--~~~gd~Vl~ 91 (416)
T 3isl_A 14 IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--IEPEDDVLI 91 (416)
T ss_dssp ECSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEE
T ss_pred eecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--cCCCCEEEE
Confidence 3444444444555555544221122 23457889999999997 345554 8999999999999853 556789999
Q ss_pred EeCCCCCCch-hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCC
Q 011959 187 FEGCYHGHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265 (474)
Q Consensus 187 ~~~~yhg~~~-~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~ 265 (474)
.+++||+... ..+...|..+..++.... + .-|+++|++.+++. ++++|++++++|++|.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~- 154 (416)
T 3isl_A 92 PIYGRFGYLLTEIAERYGANVHMLECEWG-T-------------VFDPEDIIREIKKV--KPKIVAMVHGETSTGRIHP- 154 (416)
T ss_dssp EESSHHHHHHHHHHHHTTCEEEEEECCTT-C-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC-
T ss_pred ecCCcccHHHHHHHHhcCCeeEEEecCCC-C-------------CCCHHHHHHHHhhC--CCcEEEEEccCCCCceecC-
Confidence 9999987332 223333443222111100 0 01899999999742 4688999999999999998
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCC----
Q 011959 266 PDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG---- 339 (474)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~---- 339 (474)
+++|.++|++||++||+||+|+.... ......++ +|++ +++|++.++.++|++++++++++.+.+.+
T Consensus 155 ---l~~i~~l~~~~~~~li~D~a~~~~~~--~~~~~~~~--~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~ 227 (416)
T 3isl_A 155 ---LKAIGEACRTEDALFIVDAVATIGGC--EVKVDEWK--IDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVER 227 (416)
T ss_dssp ---CHHHHHHHHHTTCEEEEECTTTTTTS--CCCTTTTT--CSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC-----
T ss_pred ---HHHHHHHHHHcCCEEEEECCccccCC--CcchhhcC--CCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccc
Confidence 88999999999999999999951110 11122223 5655 57799887778999999999988776321
Q ss_pred -------------------------------CcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHH
Q 011959 340 -------------------------------PMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGII 385 (474)
Q Consensus 340 -------------------------------~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~ 385 (474)
........+.|..++++..++++.+.+ ++..++++++.+++.+.|+
T Consensus 228 Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~ 307 (416)
T 3isl_A 228 GIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIK 307 (416)
T ss_dssp -------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 001112335577788888788877654 3677777888888888887
Q ss_pred HHhhhcCCeeEE-eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEec---CCc
Q 011959 386 DAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHS 456 (474)
Q Consensus 386 ~~~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~~---~~t 456 (474)
+. ...+.... ...+.++++.+.+. ....++.+.|.++ ||.+.++. ...+|+++ ..+
T Consensus 308 ~~--g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~ 372 (416)
T 3isl_A 308 AM--GLRLFGDDSCKMPVVTCVEIPGG-------------IDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCR 372 (416)
T ss_dssp HT--TCCBCSCGGGBCTTEEEEECCTT-------------CCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCS
T ss_pred Hc--CCEeccCccccCCcEEEEeCCCC-------------CCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCc
Confidence 74 22211110 11255666665321 1125788888887 99998753 34577765 334
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011959 457 SDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 457 ~e~i~~~l~~l~~~~~~ 473 (474)
++++++++++|++++++
T Consensus 373 ~e~i~~~~~~l~~~~~~ 389 (416)
T 3isl_A 373 KENVLFVLAGLEAVLLR 389 (416)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44499999999999875
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=218.67 Aligned_cols=326 Identities=16% Similarity=0.119 Sum_probs=212.1
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH--hcCCCC---------CCCHHHHHHHHHHHhhCC-CCCeEEEeCC
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK--KGTSFG---------APCLLENVLAEMVISAVP-SIEMVRFVNS 163 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~--~~~~~~---------~~~~~~~~la~~l~~~~~-~~~~v~~~~s 163 (474)
.++.-|+|+.++ ++.+|+|++++.+++. +..... ...+...++.++++++++ ..++++|++|
T Consensus 20 ~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g 93 (423)
T 3lvm_A 20 MKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSG 93 (423)
T ss_dssp CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESS
T ss_pred cCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCC
Confidence 456678887654 4679999999999887 321110 013455788899998886 4569999999
Q ss_pred HHHHHHHHHHHhH-hhc-CCcEEEEEeCCCCCCchhHHHh--cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHH
Q 011959 164 GTEACMGVLRLAR-AFT-GRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (474)
Q Consensus 164 GseA~~~al~~ar-~~~-~~~~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~ 239 (474)
|++|++.+++.+. .+. .++.|++.+++|++........ .|..+..++... .+ .-|+++|++.
T Consensus 94 gt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~ 159 (423)
T 3lvm_A 94 ATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR-NG-------------IIDLKELEAA 159 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT-TS-------------CCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC-CC-------------ccCHHHHHHh
Confidence 9999999999543 233 3678888888888865444322 233222211111 00 0189999998
Q ss_pred HhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceee--hhhhcC
Q 011959 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIG 317 (474)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t--~sK~l~ 317 (474)
+++ ++++|++++++|++|.+.+ +++|+++|++||++||+||+|++-. .........+|+++ ++|.++
T Consensus 160 i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~----~~~~~~~~~~di~~~s~sK~~g 228 (423)
T 3lvm_A 160 MRD---DTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSVGK----LPIDLSQLKVDLMSFSGHKIYG 228 (423)
T ss_dssp CCT---TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTTTT----SCCCTTTSCCSEEEEESTTTTS
T ss_pred cCC---CcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhcCC----CCcChhhcCCCEEEechHHhcC
Confidence 873 6899999999999999999 9999999999999999999996321 11122233567775 669665
Q ss_pred CCcceEEEEecHHHHHhhcCCCC----cccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 318 GGLPVGAYGGRRDIMEMVAPAGP----MYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 318 ~G~~iG~~~~~~~i~~~~~~~~~----~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
+.++|++++++++++.+.+... .....+.+.++.+++++.++++.+.+ +++.++++++.+++++.|++ .
T Consensus 229 -~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~----~ 303 (423)
T 3lvm_A 229 -PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD----I 303 (423)
T ss_dssp -CSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S
T ss_pred -CCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 3349999999887666653110 00122445677888888888887654 45555566666666666543 3
Q ss_pred CCeeEEee----eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------------------
Q 011959 392 GHAICGGY----ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------------------- 445 (474)
Q Consensus 392 ~~~~~v~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------- 445 (474)
+....... .+.++.+.+... + ...+.+.|.+ |.+.++.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~ 367 (423)
T 3lvm_A 304 EEVYLNGDLEHGAPNILNVSFNYV-----------E---GESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDEL 367 (423)
T ss_dssp TTEEEESCSTTBCTTEEEEEETTS-----------C---HHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHH
T ss_pred CCEEEeCCccccCCCeEEEEeCCC-----------C---HHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccc
Confidence 21111111 134555555211 1 1456666655 7776642
Q ss_pred -CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 446 -FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 -~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
...+|++ ..+|++++++++++|++++++
T Consensus 368 ~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~ 398 (423)
T 3lvm_A 368 AHSSIRFSLGRFTTEEEIDYTIELVRKSIGR 398 (423)
T ss_dssp HHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1346775 456999999999999998864
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=223.00 Aligned_cols=334 Identities=13% Similarity=0.061 Sum_probs=204.6
Q ss_pred EEeccCChhhccCCCC--CHHHHHHHHHHHHh-c-CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEE--eCCHHHHH
Q 011959 101 YIDYVGSWGPAIIGHA--DDQVLAALGETMKK-G-TSFG---APCLLENVLAEMVISAVP---SIEMVRF--VNSGTEAC 168 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~--~p~v~~a~~~~~~~-~-~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~--~~sGseA~ 168 (474)
.|||..|...+..++. .+.+.+++.+.+.. + ..|. +..++++++++++...++ ..++|++ |+||++|+
T Consensus 30 ~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al 109 (401)
T 7aat_A 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSL 109 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred ceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHH
Confidence 5788777322222322 35788888777653 2 2222 234677788888876553 2788877 99999999
Q ss_pred HHHHHHhHhhcC-CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 169 MGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 169 ~~al~~ar~~~~-~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
..+++..+.+.+ ++.|++.+++|+++.. .+...|..+..++...... .. -|++.+++.+++..+++
T Consensus 110 ~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~---------~~---~d~~~l~~~l~~~~~~~ 176 (401)
T 7aat_A 110 RVGANFLQRFFKFSRDVYLPKPSWGNHTP-IFRDAGLQLQAYRYYDPKT---------CS---LDFTGAMEDISKIPEKS 176 (401)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCCTTHHH-HHHHTTCEEEEEECEETTT---------TE---ECHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHhccCCCEEEEcCCCchhHHH-HHHHcCCeeEeeeeecccc---------Cc---cCHHHHHHHHHhCCCCc
Confidence 999986554444 6789999999987543 3344444322211100000 00 07888888887654567
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC---Cccccc-cCCCCce---eehhhhcC-C
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEY-FGVTPDL---TTLGKIIG-G 318 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~~~~~-~g~~pdi---~t~sK~l~-~ 318 (474)
++|+++.++|++|.+.+..+ +++|.++|++||+++|+||+|.+| ..+. ...... .+..+++ .+|||.++ .
T Consensus 177 ~~v~i~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~ 255 (401)
T 7aat_A 177 IILLHACAHNPTGVDPRQEQ-WKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLY 255 (401)
T ss_dssp EEEEESSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG
T ss_pred EEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccc
Confidence 88888888899998876555 999999999999999999999888 4321 111111 1233343 48999999 7
Q ss_pred CcceEEEEe---cHH----HHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-------hcC-CCHHHHHHHHHHHHHHH
Q 011959 319 GLPVGAYGG---RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-------LKE-PGTYEYLNKITGELTQG 383 (474)
Q Consensus 319 G~~iG~~~~---~~~----i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-------~~~-~~~~~~~~~~~~~l~~~ 383 (474)
|+|+||+++ +++ +.+.+. ......+.+.+.+++.++...++. .+. ++..++++++++++.+.
T Consensus 256 G~RiG~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 332 (401)
T 7aat_A 256 GERAGAFTVICRDAEEAKRVESQLK---ILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSN 332 (401)
T ss_dssp GGCEEEEEEECSSHHHHHHHHHHHH---HHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEEEeCCHHHHHHHHHHHH---HHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999875 666 333333 122223344455555555555531 111 34556666777777777
Q ss_pred HHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecC-CcHHHHHH
Q 011959 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQH 462 (474)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~-~t~e~i~~ 462 (474)
|+++....++....+..|.++++.+. .+.+...+.++||++.++ +|+++. +++++|++
T Consensus 333 L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ll~~~gi~v~~~----~Ris~~~~~~~~i~~ 391 (401)
T 7aat_A 333 LKKEGSSHNWQHITDQIGMFCFTGLK-----------------PEQVERLTKEFSIYMTKD----GRISVAGVASSNVGY 391 (401)
T ss_dssp HHHTTCCSCCHHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECCTT----CEEEGGGCCTTTHHH
T ss_pred HHhcCCCCCCceecCCcceEEecCCC-----------------HHHHHHHHHhCCEeccCC----CeEEeccCChhhHHH
Confidence 76642111111112233444333221 123334445779999865 577654 57777999
Q ss_pred HHHHHHHHHh
Q 011959 463 TITAAEKVLR 472 (474)
Q Consensus 463 ~l~~l~~~~~ 472 (474)
++++|+++++
T Consensus 392 ~~~~l~~~~~ 401 (401)
T 7aat_A 392 LAHAIHQVTK 401 (401)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998763
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=216.86 Aligned_cols=310 Identities=15% Similarity=0.119 Sum_probs=211.0
Q ss_pred CCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCC---CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCC
Q 011959 116 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 191 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~~---~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (474)
.+|+|++++.+++.. +++ ...+...++.++++++++. .+++++++||++|++.+++. +.+ ++|++.+++|
T Consensus 11 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~---~~~-d~vl~~~~~~ 84 (353)
T 2yrr_A 11 IPERVQKALLRPMRG--HLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLAN---LDR-GPVLVLVNGA 84 (353)
T ss_dssp CCHHHHGGGGSCCCC--TTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHT---CSC-CCEEEEECSH
T ss_pred CCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHH---hcC-CcEEEEcCCC
Confidence 579999998877654 121 1234578899999998862 46899999999999999984 444 7899999999
Q ss_pred CCCc-hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHH
Q 011959 192 HGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (474)
Q Consensus 192 hg~~-~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (474)
|+.. .......|..+..++... .+ ..|+++|++.++++ ++++|++++++|++|.+.+ ++
T Consensus 85 ~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~ 144 (353)
T 2yrr_A 85 FSQRVAEMAALHGLDPEVLDFPP-GE-------------PVDPEAVARALKRR--RYRMVALVHGETSTGVLNP----AE 144 (353)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCT-TS-------------CCCHHHHHHHHHHS--CCSEEEEESEETTTTEECC----HH
T ss_pred chHHHHHHHHHcCCceEEEeCCC-CC-------------CCCHHHHHHHHHhC--CCCEEEEEccCCCcceecC----HH
Confidence 8851 112223343322211110 00 12899999999853 5678888899999999998 89
Q ss_pred HHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCc------
Q 011959 271 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM------ 341 (474)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~------ 341 (474)
+|.++|++||++||+||+|. + .. ......++ +|++ +++|+++++..+|++++++++++.+......
T Consensus 145 ~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~ 219 (353)
T 2yrr_A 145 AIGALAKEAGALFFLDAVTT-LGML--PFSMRAMG--VDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLAR 219 (353)
T ss_dssp HHHHHHHHHTCEEEEECTTT-TTTS--CCCHHHHT--CSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHH
T ss_pred HHHHHHHHcCCeEEEEcCcc-cccc--cccccccC--ceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHH
Confidence 99999999999999999994 4 22 12222233 5665 4679887655589999999998877510000
Q ss_pred ------ccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe--eeceeEEEEEec
Q 011959 342 ------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG--YISGMFGFFFTE 410 (474)
Q Consensus 342 ------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~--~~g~~~~i~~~~ 410 (474)
.....++.|+.+++++.++++.+.+ ++..++++++.+++++.|+++ ++..... ..+.++++.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~ 295 (353)
T 2yrr_A 220 VAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR----GFRPYPKASPLPTVLVVRPPE 295 (353)
T ss_dssp HHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----TCEESCSSSBCTTEEEEECCT
T ss_pred HhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC----CCccccCccCCCeEEEEECCC
Confidence 0112335677788888888887644 356677778888888888764 2211111 135555666531
Q ss_pred CCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEec--CCcHHHHH-HHHHHHHHHHhh
Q 011959 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSL--AHSSDDIQ-HTITAAEKVLRQ 473 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~--~~t~e~i~-~~l~~l~~~~~~ 473 (474)
. ....++.+.|.++||.+.++. ...+|+++ ..++++++ +++++|++++++
T Consensus 296 ~-------------~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 296 G-------------VDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp T-------------CCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred C-------------CCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 1 012578889999999998753 34678875 46889998 999999998865
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.9e-25 Score=218.34 Aligned_cols=336 Identities=12% Similarity=0.032 Sum_probs=206.7
Q ss_pred EEEeccCChhhccCCC--CCHHHHHHHHHHH-Hhc-C-CCC---CCCHHHHHHHHHHHhhCC---CCC--eEEEeCCHHH
Q 011959 100 EYIDYVGSWGPAIIGH--ADDQVLAALGETM-KKG-T-SFG---APCLLENVLAEMVISAVP---SIE--MVRFVNSGTE 166 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~-~~~-~-~~~---~~~~~~~~la~~l~~~~~---~~~--~v~~~~sGse 166 (474)
..|||..|...++-|. ..+.|.+|.. .+ +.. . .|+ +..++++++++++..... ..+ .+++|+||++
T Consensus 30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~ 108 (405)
T 3k7y_A 30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTG 108 (405)
T ss_dssp SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHH
Confidence 4578887743334443 4688888876 43 332 2 232 345778888888866543 234 3689999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
|+..++++...+.+ +.|++.+|+|.++.. .....|..+..+++....+ ..+ |+++|++.+++.+ +
T Consensus 109 al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~-~~~~~g~~~~~v~~~~~~~---------~~~---d~~~l~~~l~~~~-~ 173 (405)
T 3k7y_A 109 AIFVLLEFLKMLNV-ETLYVTNPPYINHVN-MIESRGFNLKYINFFDYNL---------IDI---NYDLFLNDLRNIP-N 173 (405)
T ss_dssp HHHHHHHHHHTTTC-CEEEEESSCCHHHHH-HHHTTTCEEEEECCEETTT---------TEE---CHHHHHHHHHHSC-S
T ss_pred HHHHHHHHHHhcCC-CEEEEeCCCCHhHHH-HHHHcCCeEEEEecccccc---------CCc---CHHHHHHHHHhCC-C
Confidence 99999985433335 999999999988543 3334444332222100000 000 7999999987532 3
Q ss_pred eEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC---ccccc-cCCCCcee---ehhhhcC
Q 011959 247 IAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG---GAQEY-FGVTPDLT---TLGKIIG 317 (474)
Q Consensus 247 ~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~---~~~~~-~g~~pdi~---t~sK~l~ 317 (474)
.++++++|. +|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+.. ..... ....+.++ +|||.|+
T Consensus 174 ~~~i~l~~~~~NPTG~~~s~~~-~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 252 (405)
T 3k7y_A 174 GSSVILQISCYNPCSVNIEEKY-FDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMS 252 (405)
T ss_dssp SCEEEECCSSCTTTCCCCCHHH-HHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSC
T ss_pred CeEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCC
Confidence 567777765 788998887666 999999999999999999999988 43211 11111 12223433 7999999
Q ss_pred -CCcceEEEEe---cHHHHHhhcCC-CCcccccCCCCChHHHHHHHHHHHHh-------cC-CCHHHHHHHHHHHHHHHH
Q 011959 318 -GGLPVGAYGG---RRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRL-------KE-PGTYEYLNKITGELTQGI 384 (474)
Q Consensus 318 -~G~~iG~~~~---~~~i~~~~~~~-~~~~~~~t~~~~~~~~aaa~aal~~~-------~~-~~~~~~~~~~~~~l~~~L 384 (474)
+|||+||+++ ++++++.+... .........+.+.+++.++.++|+.- ++ ..++++++++++.+.+.|
T Consensus 253 l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L 332 (405)
T 3k7y_A 253 LYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKL 332 (405)
T ss_dssp CTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999853 66666544310 01111122234567777777777531 11 233445666666677766
Q ss_pred H----HHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecC-CcHHH
Q 011959 385 I----DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDD 459 (474)
Q Consensus 385 ~----~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~-~t~e~ 459 (474)
+ ++.....+....+..|+++++.+.. ++++.|.++||++.|++ |++++ .++++
T Consensus 333 ~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~------------------~~~~~L~~~gV~v~p~~----Ris~a~~~~~~ 390 (405)
T 3k7y_A 333 ETYQKKYNLNYDWNVYKKQRGLFSFVPLLA------------------KIAEHLKTHHIYIINNG----RINVSGITKNN 390 (405)
T ss_dssp HHHGGGGTCCCCGGGGSSCCSSEEECGGGG------------------GGTTTTTTTTEECCTTS----EEEGGGCCTTH
T ss_pred HhhhhhcCCCCCCccccCCceEEEecCCCH------------------HHHHHHHHCCEeecCCC----eEEEeccCHHH
Confidence 6 4321000111123344444432210 22345578899999975 88875 68999
Q ss_pred HHHHHHHHHHHHhhC
Q 011959 460 IQHTITAAEKVLRQI 474 (474)
Q Consensus 460 i~~~l~~l~~~~~~~ 474 (474)
|++++++|+++++++
T Consensus 391 i~~~~~~i~~~~~~~ 405 (405)
T 3k7y_A 391 VDYIADKICLSLSQI 405 (405)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999998764
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-25 Score=226.62 Aligned_cols=345 Identities=13% Similarity=0.030 Sum_probs=204.7
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHh
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA 177 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~ 177 (474)
|+.||||.+++++ |+|++++.+++..+.....+.....+|++++++++ +.++++|++||++|++.|++.++.
T Consensus 40 ~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~~~y~~~~~~~~l~~~la~~~-~~~~v~~t~~gt~A~~~al~~~~~ 111 (467)
T 2oqx_A 40 EDVFIDLLTDSGT-------GAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIF-GYQYTIPTHQGRGAEQIYIPVLIK 111 (467)
T ss_dssp GGCSEECSCCSSC-------SCCCHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHH-CCSEEEEEC--CCSHHHHHHHHHH
T ss_pred CCeeEecccCCCc-------HHHHHHHHHHhccCcceeccCchhHHHHHHHHHHh-CcCcEEEcCCcHHHHHHHHHHHhc
Confidence 5679999887543 88999998887665332234566678888888888 568999999999999999998765
Q ss_pred hc----C--C-cEEEEEeCCCCCCchhHHHh-cCCCCccCCCCCCCCCCCCCCCceEEccC-CCHHHHHHHHhcCC-CCe
Q 011959 178 FT----G--R-ERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNK-GEI 247 (474)
Q Consensus 178 ~~----~--~-~~ii~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~~le~~l~~~~-~~~ 247 (474)
.+ | + ++||.. .||+.+...... .+........+ ..++.. ......+ .|+++|++.+++++ +++
T Consensus 112 ~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~d~~~Le~~i~~~~~~~~ 184 (467)
T 2oqx_A 112 KREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVRNVYIK--EAFDTG---VRYDFKGNFDLEGLERGIEEVGPNNV 184 (467)
T ss_dssp HHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEEECBCT--TTTCTT---SCCTTTTCBCHHHHHHHHHHHCGGGC
T ss_pred cccccCCCCccceEEec--ccccccchhhhhccCcceeecccc--ccccCC---CCCCccCCcCHHHHHHHHHhcCCCce
Confidence 42 4 2 556654 578654333322 22211110000 000000 0000111 18999999997532 368
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC----------c-ccCCCccccccC----CCCc--ee
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG----------F-RLAYGGAQEYFG----VTPD--LT 310 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g----------~-r~g~~~~~~~~g----~~pd--i~ 310 (474)
++|++++++|++|...++.+++++|+++|++||++||+|++|.. . ..|... ..++ ..+| +.
T Consensus 185 ~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~--~~~~~~~~~~~d~~~~ 262 (467)
T 2oqx_A 185 PYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTI--EQITRETYKYADMLAM 262 (467)
T ss_dssp CCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCH--HHHHHHHGGGCSEEEE
T ss_pred eEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccH--HHHhhhhhccCCeEEE
Confidence 99999999888644566677799999999999999999966532 1 112111 0111 1134 35
Q ss_pred ehhhhcCCCcce-EEEEecHH-HHHhhcCCCCc---c-cccCCCCChHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHH
Q 011959 311 TLGKIIGGGLPV-GAYGGRRD-IMEMVAPAGPM---Y-QAGTLSGNPLAMTAGI-HTLKRLKEPGTYEYLNKITGELTQG 383 (474)
Q Consensus 311 t~sK~l~~G~~i-G~~~~~~~-i~~~~~~~~~~---~-~~~t~~~~~~~~aaa~-aal~~~~~~~~~~~~~~~~~~l~~~ 383 (474)
+++|+++. |+ |+++++++ +++.+...... . ...+++.......+++ ..++...+++.+++..++++++++.
T Consensus 263 s~sK~~g~--~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~ 340 (467)
T 2oqx_A 263 SAKKDAMV--PMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDG 340 (467)
T ss_dssp ESSSTTCC--SSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ecccccCC--CCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHH
Confidence 78999863 44 56677766 44433210011 0 1112333333222222 2233222224566777888889988
Q ss_pred HHHHhhhcCCeeEEeeeceeEEEEEec--CCCcCcccccccchHHHHHHHHHH-HHCCeEecccCC--------------
Q 011959 384 IIDAGKKAGHAICGGYISGMFGFFFTE--GPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQF-------------- 446 (474)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~-------------- 446 (474)
|++. .+. .. +..|.++++.+.. .... ........+.+.| .++||.+.+++.
T Consensus 341 L~~~--~~~--~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~ 408 (467)
T 2oqx_A 341 LEEI--GVV--CQ-QAGGHAAFVDAGKLLPHIP-------ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLP 408 (467)
T ss_dssp HHHT--TCC--EE-EECSSCEEEEHHHHSTTSC-------GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCC
T ss_pred HHHC--CCe--ee-cCCceEEEEechhhcccCC-------cccccHHHHHHHHHHhcCceeccccccccccccccccccc
Confidence 8875 233 22 4456677776632 1000 0000135678888 789999987431
Q ss_pred ---cceEEecC---CcHHHHHHHHHHHHHHHhh
Q 011959 447 ---EAGFTSLA---HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 447 ---~~~~~~~~---~t~e~i~~~l~~l~~~~~~ 473 (474)
..+|+++. +|+++|++++++|++++++
T Consensus 409 ~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 409 CPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp CSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred CccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 45677654 8999999999999998864
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=220.60 Aligned_cols=345 Identities=15% Similarity=0.048 Sum_probs=210.2
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar 176 (474)
.|+.|+||.++.++.. -.+++.+++. .+.....+.....+|.+.+++++ +.+++++++||++|++.+++.+
T Consensus 40 ~~~~ylD~~~~~~~~~---~~~~~~~a~~----~~~~~y~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~a~~~al~~l- 110 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNA---MSDKQWAGMM----MGDEAYAGSENFYHLERTVQELF-GFKHIVPTHQGRGAENLLSQLA- 110 (456)
T ss_dssp GGGCSEECSCSSSCCC---CCHHHHHHHT----TCCCCSSSCHHHHHHHHHHHHHH-CCSEEEEESSHHHHHHHHHHHH-
T ss_pred cccceeeeccccCCcc---CCHHHHHHhh----cchhhcccChhHHHHHHHHHHHh-CCCcEEEeCCcHHHHHHHHHHh-
Confidence 3567999988754332 2466666664 32222235666778888888887 5679999999999999999853
Q ss_pred hhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-CHHHHHHHHhcCC-CCeEEEEEcc
Q 011959 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENNK-GEIAAIILEP 254 (474)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-d~~~le~~l~~~~-~~~a~vi~ep 254 (474)
.++++ |+.+++||+.+...+...|..+...+...... + .+...+.++ |+++|++.+++.. ..+++|++++
T Consensus 111 --~~~gd-i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~-~----~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~ 182 (456)
T 2ez2_A 111 --IKPGQ-YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHD-A----GLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAV 182 (456)
T ss_dssp --CCTTC-EEEESSCCHHHHHHHHHTTCEEEECBCGGGGC-T----TCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEES
T ss_pred --CCCCC-EeccccccchhHHHHHHcCCEEEEeccccccc-c----cccccccCCCCHHHHHHHHHhccccceeEEEEec
Confidence 34444 78888888876666666665443322110000 0 000001122 8999999987532 2458888885
Q ss_pred ccC-CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC----------c-ccCCCcc--ccccCCCCceeehh-hhcC-C
Q 011959 255 VVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG----------F-RLAYGGA--QEYFGVTPDLTTLG-KIIG-G 318 (474)
Q Consensus 255 ~~~-~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g----------~-r~g~~~~--~~~~g~~pdi~t~s-K~l~-~ 318 (474)
++| ++|.+. +.+++++|+++|++||++||+||+|+. + +.+.... .+..+..+|++++| |.++ .
T Consensus 183 p~n~ptG~~~-~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~ 261 (456)
T 2ez2_A 183 TVNLAGGQPV-SMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV 261 (456)
T ss_dssp SBTTTTSBCC-CHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCC
T ss_pred cCCCCCCccC-CHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCC
Confidence 554 788654 566699999999999999999999964 4 3332211 01223457877653 4444 4
Q ss_pred CcceEEEEe-cHHHHHhhcCCCCccc-ccCC-CCChHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCe
Q 011959 319 GLPVGAYGG-RRDIMEMVAPAGPMYQ-AGTL-SGNPLAMTA-GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA 394 (474)
Q Consensus 319 G~~iG~~~~-~~~i~~~~~~~~~~~~-~~t~-~~~~~~~aa-a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (474)
| ++|++++ ++++++.+.......+ ..++ +.++..+++ +.+.++.++ +++.++.+++.+++++.|.+. ++.
T Consensus 262 ~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~----g~~ 335 (456)
T 2ez2_A 262 N-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA----GVP 335 (456)
T ss_dssp S-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT----TCC
T ss_pred C-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC----CCc
Confidence 5 6899988 6888776642111111 1122 224444444 555555443 356677777778888887763 222
Q ss_pred eEEeeeceeEEEEEec--CCCcCcccccccchHH-HHHHHHHH-HHCCeEecccC-----------------CcceEEec
Q 011959 395 ICGGYISGMFGFFFTE--GPVYNFEDAKKSETTK-FARFYRGM-LEEGVYFAPSQ-----------------FEAGFTSL 453 (474)
Q Consensus 395 ~~v~~~g~~~~i~~~~--~~~~~~~~~~~~~~~~-~~~~~~~l-~~~Gv~v~~~~-----------------~~~~~~~~ 453 (474)
...+..|.++++.+.. .... .... ...+.+.| .++||.+.+.+ ...+|+++
T Consensus 336 ~~~p~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~ 407 (456)
T 2ez2_A 336 IVEPVGGHAVFLDARRFCEHLT--------QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTI 407 (456)
T ss_dssp BCSSCCSSEEEEEHHHHTTTSC--------GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEEC
T ss_pred cccCCCceEEEEEhHHhcCCCC--------hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEe
Confidence 2123346666666531 1000 0111 34556777 57899864421 14567765
Q ss_pred C---CcHHHHHHHHHHHHHHHhh
Q 011959 454 A---HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~---~t~e~i~~~l~~l~~~~~~ 473 (474)
. ++++++++++++|++++++
T Consensus 408 ~~~~~t~e~i~~~~~~l~~~l~~ 430 (456)
T 2ez2_A 408 PRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp CTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhh
Confidence 5 7999999999999998764
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=211.66 Aligned_cols=329 Identities=17% Similarity=0.117 Sum_probs=208.4
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~ 178 (474)
+++|||.++. +.. .+|++++++.+.... ....++.....+|.+++++++ +.+.+++++||++|+..+++.. .
T Consensus 3 ~~~i~~~~~~---~~~-p~~~~~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~-g~~~~~~~~~gt~a~~~~~~~~--~ 74 (347)
T 1jg8_A 3 HMMIDLRSDT---VTK-PTEEMRKAMAQAEVG-DDVYGEDPTINELERLAAETF-GKEAALFVPSGTMGNQVSIMAH--T 74 (347)
T ss_dssp --CEECSCGG---GCC-CCHHHHHHHHTCCCC-CGGGTCCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHH--C
T ss_pred ceEEEecccc---CCC-CCHHHHHHHhcCCCC-CcccCCChHHHHHHHHHHHHh-CCceEEEecCcHHHHHHHHHHh--c
Confidence 4678988874 333 678898888654321 112235666778888888888 5578899999999999998742 2
Q ss_pred cCCcEEEEEeCCCCCCch-h-HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC---CCCeEEEEEc
Q 011959 179 TGRERIIKFEGCYHGHAD-P-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILE 253 (474)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~-~-~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~e 253 (474)
..+++|++.+++|..... . .....|..+..+ .. ..+ .-|+++|++.+++. .+++++|+++
T Consensus 75 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~-~~~-------------~~d~~~l~~~i~~~~~~~~~~~~v~~~ 139 (347)
T 1jg8_A 75 QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG-KNG-------------AMDPDDVRKAIRPRNIHFPRTSLIAIE 139 (347)
T ss_dssp CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE-ETT-------------EECHHHHHHHSCCSCTTSCCEEEEEEE
T ss_pred CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC-CCC-------------ccCHHHHHHHhccccccccCceEEEEe
Confidence 345677777766543222 1 223333322111 00 000 01899999998742 1268899999
Q ss_pred cccCCC-CcccCCHHHHHHHHHHHHHhCCEEEEeccccC--c-ccCCCccccccCCCCc--eeehhhhcCCCcceEE-EE
Q 011959 254 PVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEVMTG--F-RLAYGGAQEYFGVTPD--LTTLGKIIGGGLPVGA-YG 326 (474)
Q Consensus 254 p~~~~~-G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~-r~g~~~~~~~~g~~pd--i~t~sK~l~~G~~iG~-~~ 326 (474)
+++|++ |.+.+.+ .+++|.++|++||++||+||+|.- + ..+. ....+....| ++++||++++ ++|+ ++
T Consensus 140 ~~~npt~G~~~~~~-~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~l~~--~~G~~~~ 214 (347)
T 1jg8_A 140 NTHNRSGGRVVPLE-NIKEICTIAKEHGINVHIDGARIFNASIASGV--PVKEYAGYADSVMFCLSKGLCA--PVGSVVV 214 (347)
T ss_dssp SSBTTTTSBCCCHH-HHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC--CHHHHHHTCSEEEEESSSTTCC--SSCEEEE
T ss_pred ccccccCCccCcHH-HHHHHHHHHHHCCCEEEeehhhhhcchhhcCC--ChHHhcccccEEEEecccccCC--CceEEEE
Confidence 988887 7766544 499999999999999999998741 1 1111 1111111123 3479999975 4675 56
Q ss_pred ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEE
Q 011959 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (474)
Q Consensus 327 ~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (474)
+++++++.+..... ..++++..+.+.++++..+|+... +. .++..++.+++.+.|+++. ..+. ..+..+.++++
T Consensus 215 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~~L~~~~--~~~~-~~~~~~~~~~~ 288 (347)
T 1jg8_A 215 GDRDFIERARKARK-MLGGGMRQAGVLAAAGIIALTKMV-DR-LKEDHENARFLALKLKEIG--YSVN-PEDVKTNMVIL 288 (347)
T ss_dssp ECHHHHHHHHHHHH-HHTCCCSSTHHHHHHHHHHHHHSS-TT-HHHHHHHHHHHHHHHHHHT--CBCC-GGGCCSSEEEE
T ss_pred cCHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhcC--ceec-cCCCcceEEEE
Confidence 78888776642111 122344456677777777777532 23 3445567788888887752 2111 11345677777
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+.... ....++.+.|.++||.+.+.+...+|++ ..++++++++++++|++++++
T Consensus 289 ~~~~~~------------~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 289 RTDNLK------------VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp ECTTSS------------SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred Eccccc------------CCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 663210 0125788888899999998765668886 456999999999999998764
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=217.25 Aligned_cols=328 Identities=12% Similarity=0.070 Sum_probs=214.6
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC-CCC-eEEEeCCHHHHHHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVL 172 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~-~~~-~v~~~~sGseA~~~al 172 (474)
.+|+.|+|..+. . ..+|++++++.+++.. .+. .+.....++.++++++++ ..+ ++++++||++|++.++
T Consensus 16 ~~~~~~~~~~g~-----~-~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~ 87 (393)
T 2huf_A 16 VTPNKLLMGPGP-----S-NAPQRVLDAMSRPILG--HLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATL 87 (393)
T ss_dssp CCCCCEECSSSC-----C-CCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHH
T ss_pred CCCCeEEecCCC-----C-CCCHHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHH
Confidence 355666654432 2 2689999998876543 121 123567788999998886 343 7999999999999999
Q ss_pred HHhHhhcCCcEEEEEeCCCCCCchh-HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEE
Q 011959 173 RLARAFTGRERIIKFEGCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (474)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (474)
+.. ..++++|++.+++||+.... .....|..+..++... .+ ..|+++|++.+++. ++++|+
T Consensus 88 ~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~~--~~~~v~ 149 (393)
T 2huf_A 88 CNL--LEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKV-GQ-------------SLSLDEIRDALLIH--KPSVLF 149 (393)
T ss_dssp HHH--CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TC-------------CCCHHHHHHHHHHH--CCSEEE
T ss_pred HHH--hCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCC-CC-------------CCCHHHHHHHHhcc--CCcEEE
Confidence 963 34567899999999884211 1122343222211110 00 12899999999742 467888
Q ss_pred EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEec
Q 011959 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR 328 (474)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~ 328 (474)
+++++|++|.+.+ +++|.++|++||++||+||+|+ + .. ...... ..+|++ +++|+++++..+|+++++
T Consensus 150 ~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~sK~l~g~~G~G~~~~~ 220 (393)
T 2huf_A 150 LTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA--PMFMDR--WEIDAMYTGSQKVLGAPPGITPVSFS 220 (393)
T ss_dssp EESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTTT--TTCSEEECCSSSTTCCCSSCEEEEEC
T ss_pred EEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--Ccchhh--cCccEEEECCCcccccCCCeEEEEEC
Confidence 8888899999998 8889999999999999999985 3 11 111122 235766 567998754445999999
Q ss_pred HHHHHhhcCCC----Ccc---------------cccC-CCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHH
Q 011959 329 RDIMEMVAPAG----PMY---------------QAGT-LSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGII 385 (474)
Q Consensus 329 ~~i~~~~~~~~----~~~---------------~~~t-~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~ 385 (474)
+++++.+...+ +.+ ...+ .+.+..+++++.++|+.+.+ ++..++++++++++.+.|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 300 (393)
T 2huf_A 221 HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQ 300 (393)
T ss_dssp HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99998876421 111 0112 23456666666678877643 4567778888888888887
Q ss_pred HHhhhcCCeeEEe-eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEec-C--Cc
Q 011959 386 DAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL-A--HS 456 (474)
Q Consensus 386 ~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~~-~--~t 456 (474)
++ ...+..... ..+.++++.+... ....++.+.|+++ ||++.++. ...+|+++ . .+
T Consensus 301 ~~--g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~ 365 (393)
T 2huf_A 301 DA--GFELYADPKDRLSTVTTIKVPQG-------------VDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNAT 365 (393)
T ss_dssp HT--TCCBSSCGGGBCTTEEEEECCTT-------------CCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCS
T ss_pred Hc--CCeeccCccccCCcEEEEEcCCC-------------CCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCC
Confidence 75 222211100 1234666665311 0125678888865 99998763 34678876 3 57
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011959 457 SDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 457 ~e~i~~~l~~l~~~~~~ 473 (474)
++++++++++|++++++
T Consensus 366 ~e~i~~~~~~l~~~~~~ 382 (393)
T 2huf_A 366 TERVDRVLQVFQEAVAA 382 (393)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998864
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=221.55 Aligned_cols=335 Identities=14% Similarity=0.034 Sum_probs=223.3
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc----C--CC-C--CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----T--SF-G--APCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~--~~-~--~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA 167 (474)
+..|+|. +.+|+.++.+.+++.++++.. . .+ + .......++.++++++++ ..++|++++|++++
T Consensus 67 ~~iyld~------~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a 140 (465)
T 3e9k_A 67 NAIYFLG------NSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVN 140 (465)
T ss_dssp BCEECBT------TTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHH
T ss_pred CeEEecC------CccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHH
Confidence 4556662 457877888888887776541 1 11 1 122445677888888876 46799999999999
Q ss_pred HHHHHHHhHhh-cCCcEEEEEeCCCCCCchhHH---HhcCCCCcc--CC-CCCCCCCCCCCCCceEEccCCCHHHHHHHH
Q 011959 168 CMGVLRLARAF-TGRERIIKFEGCYHGHADPFL---VKAGSGVAT--LG-LPDSPGVPKGATYETLTAPFNDVSALENLF 240 (474)
Q Consensus 168 ~~~al~~ar~~-~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~--~~-~~~~~g~~~~~~~~~~~~~~~d~~~le~~l 240 (474)
+..+++..... ..+++||+.+++||+...... ...|..+.. +. .+..... .-|+++|++.+
T Consensus 141 l~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~------------~~d~~~l~~~i 208 (465)
T 3e9k_A 141 LHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEE------------TLRIEDILEVI 208 (465)
T ss_dssp HHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCS------------SCCHHHHHHHH
T ss_pred HHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCC------------ccCHHHHHHHH
Confidence 99999853111 235679999999988554332 223433210 00 0110000 01799999999
Q ss_pred hcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCC
Q 011959 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG 318 (474)
Q Consensus 241 ~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~ 318 (474)
+++.+++++|++++++|++|.+.+ +++|.++|++||+++|+|++|+.-. .......++ .|++ +++|.+++
T Consensus 209 ~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~~g~--~~~~~~~~~--~D~~~~s~~K~l~~ 280 (465)
T 3e9k_A 209 EKEGDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHAVGN--VELYLHDWG--VDFACWCSYKYLNA 280 (465)
T ss_dssp HHHGGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTTTT--SCCCHHHHT--CCEEEECSSSTTCC
T ss_pred HhcCCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhhcCC--cCCchhhcC--CCEEEECccccccc
Confidence 754347899999999999999998 9999999999999999999995210 011222233 4554 67899964
Q ss_pred C-cceEEEEecHHHHHhhcCCCCccccc----------------------CCCCChHHHHHHHHHHHHhcC---CCHHHH
Q 011959 319 G-LPVGAYGGRRDIMEMVAPAGPMYQAG----------------------TLSGNPLAMTAGIHTLKRLKE---PGTYEY 372 (474)
Q Consensus 319 G-~~iG~~~~~~~i~~~~~~~~~~~~~~----------------------t~~~~~~~~aaa~aal~~~~~---~~~~~~ 372 (474)
| .++|++++++++.+.+.+....+.++ ..+.|++++++..++++.+.+ +++.++
T Consensus 281 gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~ 360 (465)
T 3e9k_A 281 GAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKK 360 (465)
T ss_dssp CTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 4 47899999998877665321110000 115677888888888887754 567777
Q ss_pred HHHHHHHHHHHHHHHhhh-------cCCee----EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEe
Q 011959 373 LNKITGELTQGIIDAGKK-------AGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 441 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~-------~~~~~----~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 441 (474)
..++.+++.+.|++.... .++.. +....|.++++.+... ..++.+.|.++||++
T Consensus 361 ~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~---------------~~~l~~~L~~~Gi~v 425 (465)
T 3e9k_A 361 SVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVP---------------NKDVFQELEKRGVVC 425 (465)
T ss_dssp HHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCT---------------TCCHHHHHHTTTEEC
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCC---------------HHHHHHHHHHCCEEE
Confidence 888888888888775211 12111 1123477888876411 135788899999998
Q ss_pred cccCCcceEEe---cCCcHHHHHHHHHHHHHHHhh
Q 011959 442 APSQFEAGFTS---LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 442 ~~~~~~~~~~~---~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.......+|++ +..|++|+++++++|++++++
T Consensus 426 ~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 426 DKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp EEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred ecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 86655677874 567999999999999999864
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.8e-24 Score=217.82 Aligned_cols=332 Identities=12% Similarity=0.092 Sum_probs=208.9
Q ss_pred CCHHHHHHHHHHHHhc---C--CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHhHhh-cCCcE
Q 011959 116 ADDQVLAALGETMKKG---T--SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAF-TGRER 183 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~---~--~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~al~~ar~~-~~~~~ 183 (474)
.++++++++.+.+... . .|+ +..+++.++++++.+..+ ..++|++++||++|+..+++.. . ..++.
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l--~~~~gd~ 184 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLL--IRNEKDG 184 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHH--CCSTTEE
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHH--cCCCCCE
Confidence 4677888888888762 1 122 234678888888876543 4689999999999999999942 2 35678
Q ss_pred EEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC---CCCeEEEEEccccCCCC
Q 011959 184 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSG 260 (474)
Q Consensus 184 ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G 260 (474)
|++.+++|+++... +...|..+..+++....++ ..|+++|++.+++. ..++++|+++.++|++|
T Consensus 185 Vlv~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG 251 (500)
T 3tcm_A 185 ILVPIPQYPLYSAS-IALHGGALVPYYLNESTGW------------GLETSDVKKQLEDARSRGINVRALVVINPGNPTG 251 (500)
T ss_dssp EEEEESCCTHHHHH-HHHTTCEEEEEECBTTTTS------------BCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTC
T ss_pred EEEeCCCcHhHHHH-HHHcCCEEEEEecccccCC------------CCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCc
Confidence 88889998875443 3334443222111111000 12899999998742 22566776666678889
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC-CCc-cc----cccCC-C--Cc-ee--ehhhhc-C-CCcceEEE
Q 011959 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGG-AQ----EYFGV-T--PD-LT--TLGKII-G-GGLPVGAY 325 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~~~-~~----~~~g~-~--pd-i~--t~sK~l-~-~G~~iG~~ 325 (474)
.+.+.++ +++|.++|++||++||+||+|.++ ..+ ..+ .. ..++. . .+ ++ +|||++ | +|+|+||+
T Consensus 252 ~~~s~~~-l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 330 (500)
T 3tcm_A 252 QVLAEEN-QYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYF 330 (500)
T ss_dssp CCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEE
T ss_pred ccCCHHH-HHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEE
Confidence 8887665 999999999999999999999877 432 111 11 12221 1 22 33 899999 5 69999999
Q ss_pred Ee---cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-----------hcC-CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 326 GG---RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----------LKE-PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 326 ~~---~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----------~~~-~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
++ ++++++.+.. . ...+++.++++++++..+|+. .+. +.+.++++++++++.+.|+++
T Consensus 331 ~~~~~~~~~~~~l~~---~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--- 403 (500)
T 3tcm_A 331 EITGFSAPVREQIYK---I-ASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL--- 403 (500)
T ss_dssp EEESCCTTHHHHHHH---H-HHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred EEeCCCHHHHHHHHH---H-HhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 87 8888888763 1 123566788888888877752 111 344555666666666666543
Q ss_pred cCCeeEEeeece-eEEEEEecCCCcCcccc--cccchHHHHHHHHHHHHCCeEecccC-------CcceEEecCCcHHHH
Q 011959 391 AGHAICGGYISG-MFGFFFTEGPVYNFEDA--KKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSLAHSSDDI 460 (474)
Q Consensus 391 ~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~~~~~~t~e~i 460 (474)
+........|. ++++.+..+. ...+. ..........+.+.|.++||++.|+. ...+|+++.++++++
T Consensus 404 -~g~~~~~~~g~~~~~~~~~lp~--~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i 480 (500)
T 3tcm_A 404 -EGITCNEAEGAMYVFPQICLPQ--KAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKI 480 (500)
T ss_dssp -TTEECCCCCBTTEECCEECCCH--HHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTH
T ss_pred -CCcEEecCCeEEEEeeeecCch--hhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHH
Confidence 22222334444 4443332110 00000 00000111112355567799998763 235799888999999
Q ss_pred HHHHHHHHHHHhh
Q 011959 461 QHTITAAEKVLRQ 473 (474)
Q Consensus 461 ~~~l~~l~~~~~~ 473 (474)
++++++|.+++++
T Consensus 481 ~~~i~~l~~~~~~ 493 (500)
T 3tcm_A 481 PAVISRFTVFHEA 493 (500)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-24 Score=209.13 Aligned_cols=308 Identities=17% Similarity=0.081 Sum_probs=205.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCC
Q 011959 116 ADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg 193 (474)
.+|++++++.+++.. .++. ..+...++.++++++++ ..+.+++++||++|++.+++.. ..++++|++.+++|++
T Consensus 12 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~~ 87 (352)
T 1iug_A 12 LHPKALEALARPQLH--HRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL--FAPGERVLVPVYGKFS 87 (352)
T ss_dssp CCHHHHHHHHSCCCC--TTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSHHH
T ss_pred CCHHHHHHhccCCCC--ccCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhc--cCCCCeEEEEeCCchh
Confidence 579999999887642 1211 22345788888888886 3468999999999999999953 3456789999999988
Q ss_pred Cch-hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHH
Q 011959 194 HAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (474)
Q Consensus 194 ~~~-~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (474)
... ..+...|..+..++... .+. .|+++|++ +++++|++++++|++|.+.+ +++|
T Consensus 88 ~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~------~~~~~v~~~~~~nptG~~~~----l~~i 143 (352)
T 1iug_A 88 ERFYEIALEAGLVVERLDYPY-GDT-------------PRPEDVAK------EGYAGLLLVHSETSTGALAD----LPAL 143 (352)
T ss_dssp HHHHHHHHHTTCEEEEEECCT-TCC-------------CCTTTSCC------SSCSEEEEESEETTTTEECC----HHHH
T ss_pred HHHHHHHHHcCCceEEEeCCC-CCC-------------CCHHHHhc------cCCcEEEEEEecCCcceecC----HHHH
Confidence 641 11122343322211110 000 14555544 25678888999999999988 9999
Q ss_pred HHHHHHh--CCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCC------C--
Q 011959 273 RRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA------G-- 339 (474)
Q Consensus 273 ~~l~~~~--g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~------~-- 339 (474)
.++|++| |++||+||+|+ + .. ......+ .+|++ +++|++.++.++|++++++++++.+... .
T Consensus 144 ~~l~~~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~ 218 (352)
T 1iug_A 144 ARAFKEKNPEGLVGADMVTS-LLVG--EVALEAM--GVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARE 218 (352)
T ss_dssp HHHHHHHCTTCEEEEECTTT-BTTB--CCCSGGG--TCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHH
T ss_pred HHHHHhhCCCCEEEEECCcc-ccCc--ceecccc--CeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHH
Confidence 9999999 99999999995 3 11 1112222 35665 5789887655689999999987652210 0
Q ss_pred --Cc-ccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-eeceeEEEEEecCCC
Q 011959 340 --PM-YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPV 413 (474)
Q Consensus 340 --~~-~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~ 413 (474)
.. ....+++.|+.+++++.++++.+++ ++..++++++++++.+.|+++ ++....+ ..+.++++.+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~-- 292 (352)
T 1iug_A 219 LKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG----GLRPVPKRFSPAVAAFYLPEG-- 292 (352)
T ss_dssp HHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT----TCEESCSSBCTTCEEEECCTT--
T ss_pred HhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCcccccccCCeEEEEEcCCC--
Confidence 00 0122345678888888888987654 356667777777777777764 2221111 1567777776321
Q ss_pred cCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecC--CcHHHHHHHHHHHHHHHhh
Q 011959 414 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~--~t~e~i~~~l~~l~~~~~~ 473 (474)
....++.+.|.++||.+.++. ...+|+++. .|++++++++++|++++++
T Consensus 293 -----------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 347 (352)
T 1iug_A 293 -----------VPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEE 347 (352)
T ss_dssp -----------CCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred -----------CCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHH
Confidence 012568889999999998763 346788654 5899999999999998865
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-23 Score=208.76 Aligned_cols=286 Identities=13% Similarity=0.042 Sum_probs=194.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHH---HhcCCCCccCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLP 212 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~ 212 (474)
++.+...+++++++++++ .+++++++||++|++.+++.. ..++++|++.++.||+...... ...|.
T Consensus 61 ~~~~~~~~l~~~la~~~g-~~~~i~~~sG~~a~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~-------- 129 (398)
T 2rfv_A 61 LGNPTTDALEKKLAVLER-GEAGLATASGISAITTTLLTL--CQQGDHIVSASAIYGCTHAFLSHSMPKFGI-------- 129 (398)
T ss_dssp TCCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSSCHHHHHHHHTHHHHTTC--------
T ss_pred CCChHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCcccHHHHHHHHHHHcCC--------
Confidence 367888999999999884 458888899999999999953 3456789999998887544331 22222
Q ss_pred CCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011959 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (474)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (474)
++..++.+|++++++.++. ++++|++++++|++|.+.+ +++|.++|++||++||+||+|..+
T Consensus 130 -----------~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~ 191 (398)
T 2rfv_A 130 -----------NVRFVDAAKPEEIRAAMRP---ETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMSP 191 (398)
T ss_dssp -----------EEEEECTTSHHHHHHHCCT---TEEEEEEESSBTTTTBCCC----HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred -----------EEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 3566677799999998863 6899999999999999998 999999999999999999999743
Q ss_pred ccCCCccccccCCCCceeehhhhcC-CCcce-EEEEecHHHHH-hhcCCCCccccc-CCCCChHHHHHHHHHHHHhcCCC
Q 011959 293 RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPV-GAYGGRRDIME-MVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPG 368 (474)
Q Consensus 293 r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~i-G~~~~~~~i~~-~~~~~~~~~~~~-t~~~~~~~~aaa~aal~~~~~~~ 368 (474)
..+.. ..++....+.+++|.++ +|+|+ |++++++++++ .+. ...... +.+.+++.++++.++|+.+ +.
T Consensus 192 ~~~~~---~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 263 (398)
T 2rfv_A 192 YCQQP---LQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARF---VGLKDITGGCMSPFNAWLTLRGVKTL--GI 263 (398)
T ss_dssp TTCCG---GGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHH---THHHHTTCCCCCHHHHHHHHHHHTTH--HH
T ss_pred ccCCc---hhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHH---HHHHhCCCCCCCHHHHHHHHhhhhhH--HH
Confidence 11111 12343333458999998 58998 99999999887 555 222333 4577899999998888643 23
Q ss_pred HHHHHHHHHHHHHHHHHHHh----------hhcCCee----EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH
Q 011959 369 TYEYLNKITGELTQGIIDAG----------KKAGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (474)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~----------~~~~~~~----~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (474)
..++..++.+.+.+.|++.. ..++... ..++.|.++++++.+. ......+.+.+
T Consensus 264 ~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~------------~~~~~~l~~~~ 331 (398)
T 2rfv_A 264 RMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGG------------LEAGRRMINSV 331 (398)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH------------HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCC------------HHHHHHHHHhC
Confidence 44555566666666665431 0011000 0124688888877421 12223444444
Q ss_pred HHCCeEecccC---------------------------CcceEEe--cCCcHHHHHHHHHHHHHH
Q 011959 435 LEEGVYFAPSQ---------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 435 ~~~Gv~v~~~~---------------------------~~~~~~~--~~~t~e~i~~~l~~l~~~ 470 (474)
...|+.+.++. ...+|++ ...+++++++++++|+++
T Consensus 332 ~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 332 ELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp SSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 44466654431 2356665 556888888888888764
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=210.38 Aligned_cols=318 Identities=14% Similarity=0.097 Sum_probs=209.7
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~ 178 (474)
++||||..+... ++ |++++++.+++..+. |+ +.....++.+.++++++ .+.+++++||++|++.+++.++ .
T Consensus 30 ~~~id~~~~~~~--~~---~~v~~a~~~~~~~~~-y~-~~~~~~~l~~~la~~~~-~~~~v~~~~Gt~a~~~~l~~~~-~ 100 (399)
T 2oga_A 30 VPFLDLKAAYEE--LR---AETDAAIARVLDSGR-YL-LGPELEGFEAEFAAYCE-TDHAVGVNSGMDALQLALRGLG-I 100 (399)
T ss_dssp BCSCCHHHHHHH--TH---HHHHHHHHHHHHHTC-CS-SSHHHHHHHHHHHHHTT-SSEEEEESCHHHHHHHHHHHTT-C
T ss_pred CcccccCcCCCC--CC---HHHHHHHHHHHhcCC-CC-CchhHHHHHHHHHHHHC-CCeEEEecCHHHHHHHHHHHhC-C
Confidence 678999887532 32 999999999987642 32 45667889999999884 4588999999999999999632 3
Q ss_pred cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCC
Q 011959 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (474)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (474)
.++++|++.+++|++.. ..+...|..+..++.....+ ..|+++|++.++. ++++|+++ ++
T Consensus 101 ~~gd~vl~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~i~~---~~~~v~~~---n~ 160 (399)
T 2oga_A 101 GPGDEVIVPSHTYIASW-LAVSATGATPVPVEPHEDHP-------------TLDPLLVEKAITP---RTRALLPV---HL 160 (399)
T ss_dssp CTTCEEEEESSSCTHHH-HHHHHTTCEEEEECBCSSSS-------------SBCHHHHHHHCCT---TEEEECCB---CG
T ss_pred CCcCEEEECCCccHHHH-HHHHHCCCEEEEEecCCCCC-------------CcCHHHHHHhcCC---CCeEEEEe---CC
Confidence 45678999999998843 34444454332221110000 1289999998863 57777743 45
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c-cCCCccccccCCCCceeeh----hhhcCC-CcceEEEEec-HH
Q 011959 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R-LAYGGAQEYFGVTPDLTTL----GKIIGG-GLPVGAYGGR-RD 330 (474)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r-~g~~~~~~~~g~~pdi~t~----sK~l~~-G~~iG~~~~~-~~ 330 (474)
+|.+.+ +++|.++|++||++||+||+|+.+ . .+ ..++..+|++++ ||.+++ | ++|+++++ ++
T Consensus 161 tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~-----~~~~~~~di~~~S~~~sK~~~~~G-~~g~~~~~~~~ 230 (399)
T 2oga_A 161 YGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRG-----RRIGAGSSVAAFSFYPGKNLGCFG-DGGAVVTGDPE 230 (399)
T ss_dssp GGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETT-----EETTCTTCEEEEECCTTSSSCCSS-CCEEEEESCHH
T ss_pred cCCccC----HHHHHHHHHHcCCEEEEECcccccCccCC-----eecccccCEEEEeCCCCccCCcCC-ceEEEEeCCHH
Confidence 787777 999999999999999999999633 2 22 123333687765 599996 8 99999886 78
Q ss_pred HHHhhcCC---CCc--c----cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeE-Eeee
Q 011959 331 IMEMVAPA---GPM--Y----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYI 400 (474)
Q Consensus 331 i~~~~~~~---~~~--~----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~ 400 (474)
+++.+... +.. + .+.++..+++.++++.++++.++ .+.++.+++.+++++.|.++. ++... .+..
T Consensus 231 ~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~~ 305 (399)
T 2oga_A 231 LAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGLAGLP---GIGLPVTAPD 305 (399)
T ss_dssp HHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTTCT---TCBCCCCCTT
T ss_pred HHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCC---CccccCCCCC
Confidence 87766421 100 0 12234668899988888887553 345555666666666655421 11111 1111
Q ss_pred ceeE--EEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC---------------------------cceEE
Q 011959 401 SGMF--GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFT 451 (474)
Q Consensus 401 g~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------------~~~~~ 451 (474)
+..+ .+.+... ...++.+.|.++||.+.+... ..+|+
T Consensus 306 ~~~~~~~~~~~~~--------------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi 371 (399)
T 2oga_A 306 TDPVWHLFTVRTE--------------RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSL 371 (399)
T ss_dssp EECCCSSEEEECS--------------SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEE
T ss_pred CcceeEEEEEECC--------------CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEc
Confidence 2221 1222111 125788899999999876431 23666
Q ss_pred e--cCCcHHHHHHHHHHHHHHHhhC
Q 011959 452 S--LAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 452 ~--~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+ ..+|++|+++++++|+++++++
T Consensus 372 ~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 372 PIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5 4569999999999999998753
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=217.13 Aligned_cols=331 Identities=9% Similarity=0.022 Sum_probs=204.6
Q ss_pred CCHHHHHHHHHHHHhc-----CCCC---CCCHHHHHHHHHHHhhCC----CCCeEEEeCCHHHHHHHHHHHhHhhcCC--
Q 011959 116 ADDQVLAALGETMKKG-----TSFG---APCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRLARAFTGR-- 181 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~-----~~~~---~~~~~~~~la~~l~~~~~----~~~~v~~~~sGseA~~~al~~ar~~~~~-- 181 (474)
.+.++.+++.+.+.+. ..|+ +..+++.++++++.++.+ ..++|++++|+++|+..++++ +..+
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~---l~~~gd 178 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKI---LVSGGG 178 (498)
T ss_dssp SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHH---HCCCCG
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHH---HcCCCC
Confidence 3667778778777752 1122 234788899999987752 468999999999999999984 4332
Q ss_pred ---cEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCC--CeEEEEEcccc
Q 011959 182 ---ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG--EIAAIILEPVV 256 (474)
Q Consensus 182 ---~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~--~~a~vi~ep~~ 256 (474)
+.|++..++|..+... +...|..+..++.....++ .-|+++|++.+++... ++++|+++.++
T Consensus 179 ~~~d~Vlv~~p~y~~~~~~-~~~~g~~~v~~~~~~~~~~------------~~d~~~le~~l~~~~~~~~~k~i~l~np~ 245 (498)
T 3ihj_A 179 KSRTGVMIPIPQYPLYSAV-ISELDAIQVNYYLDEENCW------------ALNVNELRRAVQEAKDHCDPKVLCIINPG 245 (498)
T ss_dssp GGSEEEEEEESCCTHHHHH-HHHTTCEEEEEECBGGGTT------------BCCHHHHHHHHHHHTTTSEEEEEEEESSC
T ss_pred CCCCEEEEeCCCchhHHHH-HHHcCCEEEEeeccccccC------------CCCHHHHHHHHHhhhccCCCeEEEEECCC
Confidence 4788888888765433 3333432221111000000 0189999999975322 46777777777
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC--Ccccccc--CC------CCce---eehhhhc-C-CCc
Q 011959 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQEYF--GV------TPDL---TTLGKII-G-GGL 320 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~--~~~~~~~--g~------~pdi---~t~sK~l-~-~G~ 320 (474)
|++|.+.+.++ +++|.++|++||++||+||+|..+ ..+. ....... +. ..++ .+|||++ | +|+
T Consensus 246 NPTG~v~s~~~-l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~ 324 (498)
T 3ihj_A 246 NPTGQVQSRKC-IEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGY 324 (498)
T ss_dssp TTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSS
T ss_pred CCCCCcCCHHH-HHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCccc
Confidence 88998887666 999999999999999999999877 4321 1111110 01 1112 3799999 5 799
Q ss_pred ceEEEE---ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-----------hcC-CCHHHHHHHHHHHHHHHHH
Q 011959 321 PVGAYG---GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----------LKE-PGTYEYLNKITGELTQGII 385 (474)
Q Consensus 321 ~iG~~~---~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----------~~~-~~~~~~~~~~~~~l~~~L~ 385 (474)
|+||++ +++++++.+.. . .....+.+.+++.++.++++. +++ ....++++++.+++.+.|+
T Consensus 325 R~G~~~~~~~~~~l~~~l~~---~-~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 400 (498)
T 3ihj_A 325 RGGYMEVINLHPEIKGQLVK---L-LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFN 400 (498)
T ss_dssp CCEEEEEESCCHHHHHHHHH---H-HHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCCHHHHHHHHH---H-HhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999997 68999888863 2 223456678888776666531 111 2334555566666666665
Q ss_pred HHhhhcCCeeEEeeece-eEEEEEecCCCcCccccc-ccchHHHHH-HHHHHHHCCeEecccC-------CcceEEecCC
Q 011959 386 DAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDAK-KSETTKFAR-FYRGMLEEGVYFAPSQ-------FEAGFTSLAH 455 (474)
Q Consensus 386 ~~~~~~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~Gv~v~~~~-------~~~~~~~~~~ 455 (474)
+ ++.+......|. ++++.+..+. ..+.... ..... ... +.+.|.++||++.|+. ..++|+++.+
T Consensus 401 ~----~~g~~~~~p~gg~~~~~~l~~p~-~~~~~~~~~g~~~-~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~ 474 (498)
T 3ihj_A 401 Q----VPGIHCNPLQGAMYAFPRIFIPA-KAVEAAQAHQMAP-DMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILP 474 (498)
T ss_dssp T----STTEECCCCCBSSEECCEECCCH-HHHHHHHHTTSCH-HHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCS
T ss_pred c----CCCcEecCCCeEEEEEEeccCch-hhhHHHHhcCCCc-HHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCC
Confidence 4 322222334444 4444442110 0000000 00000 122 3455567899998752 2367899889
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011959 456 SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~ 473 (474)
+++++++++++|.+++++
T Consensus 475 ~~e~l~~~i~~L~~~~~~ 492 (498)
T 3ihj_A 475 PVEKLKTVLQKVKDFHIN 492 (498)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998764
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=207.11 Aligned_cols=320 Identities=16% Similarity=0.129 Sum_probs=205.6
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC---C-----CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---A-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGV 171 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---~-----~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~a 171 (474)
|+|+.++ +..+|.+++++.+++.+...+. + ..+...++.++++++++ ..+++++++||++|++.+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~ 76 (382)
T 4hvk_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHH
T ss_pred eecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHH
Confidence 6776554 3468999999999997632111 1 13456688999999886 456899999999999999
Q ss_pred HHHhHh-h-cCCcEEEEEeCCCCCCchhHHHh--cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 172 LRLARA-F-TGRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 172 l~~ar~-~-~~~~~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
++.... . .+++.|++.++.|++........ .|..+..++... .+ .-|+++|++.+++ ++
T Consensus 77 ~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~---~~ 139 (382)
T 4hvk_A 77 IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-YG-------------EVDVSFIDQKLRD---DT 139 (382)
T ss_dssp HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCT-TS-------------CBCHHHHHHHCCT---TE
T ss_pred HHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCC-CC-------------CcCHHHHHHHhcc---Cc
Confidence 995321 0 45678888887887755443332 233222211110 00 0189999998863 67
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEE
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY 325 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~ 325 (474)
++|++++++|++|.+.+ +++|.++|++||+ ||+||+|+.-.. ......++ +|++ +++|.+|+ ..+|++
T Consensus 140 ~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~~~~~--~~~~~~~~--~d~~~~s~~K~~g~-~g~g~~ 209 (382)
T 4hvk_A 140 ILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATASVGQI--EVDVEKIG--ADMLTISSNDIYGP-KGVGAL 209 (382)
T ss_dssp EEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTTBTTB--CCCHHHHT--CSEEEEESGGGTSC-TTCEEE
T ss_pred eEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHhcCCC--CCCchhcC--CCEEEEeHHHhcCC-CceEEE
Confidence 89999999999999998 9999999999999 999999951110 11222233 4554 67897652 248888
Q ss_pred EecHHHHHhhcCCC----CcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-
Q 011959 326 GGRRDIMEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG- 398 (474)
Q Consensus 326 ~~~~~i~~~~~~~~----~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~- 398 (474)
+++++. .+.+.. ........+.++.++++..++++.+.+ ++..++++++.+++.+.|++ .+......
T Consensus 210 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~ 283 (382)
T 4hvk_A 210 WIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK----IEESYLNGH 283 (382)
T ss_dssp EEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----STTEEECSC
T ss_pred EEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc----CCCeEEeCC
Confidence 877664 222100 001112344577888888888876543 45556666666666666653 22111111
Q ss_pred ---eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----------------------CcceEEe
Q 011959 399 ---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFTS 452 (474)
Q Consensus 399 ---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~~~~ 452 (474)
..+.++.+.+... ....+.+.|.++||.+.++. ...+|++
T Consensus 284 ~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~ 349 (382)
T 4hvk_A 284 PEKRLPNNVNVRFSYI--------------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLT 349 (382)
T ss_dssp SSSBCTTEEEEEETTC--------------CHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEE
T ss_pred ccccCCCEEEEEECCC--------------CHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEE
Confidence 1123555554211 12567888999999998753 2457776
Q ss_pred c--CCcHHHHHHHHHHHHHHHhh
Q 011959 453 L--AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 453 ~--~~t~e~i~~~l~~l~~~~~~ 473 (474)
+ .+|++++++++++|++++++
T Consensus 350 ~~~~~t~e~i~~~~~~l~~~~~~ 372 (382)
T 4hvk_A 350 LGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Confidence 4 46899999999999998764
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-23 Score=203.20 Aligned_cols=320 Identities=15% Similarity=0.124 Sum_probs=207.7
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CCC-CC-----CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG-AP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGV 171 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~-~~-----~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~a 171 (474)
|+|+.++ ++.+|.|++++.+++.+.. ... +. .+...++.++++++++ ..+++++++||++|++.+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~ 76 (382)
T 4eb5_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHH
T ss_pred eeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHH
Confidence 6776655 4689999999999987621 111 21 2456788889998886 356899999999999999
Q ss_pred HHHhHh-h-cCCcEEEEEeCCCCCCchhHHHh--cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 172 LRLARA-F-TGRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 172 l~~ar~-~-~~~~~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
++.... + .+++.|++.+++|++........ .|..+..++... .+ ..|+++|++.++. ++
T Consensus 77 ~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~---~~ 139 (382)
T 4eb5_A 77 IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-YG-------------EVDVSFIDQKLRD---DT 139 (382)
T ss_dssp HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT-TS-------------CBCHHHHHHHCCT---TE
T ss_pred HHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC-CC-------------ccCHHHHHHHhcC---CC
Confidence 996531 1 45678888888887754444322 232222111100 00 0279999998863 57
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEE
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY 325 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~ 325 (474)
++|++++++|++|.+.+ +++|.++|++||++ |+||+|. +.. .......+ .+|++ +++|.++. ..+|++
T Consensus 140 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~-~~~~~~~~--~~di~~~s~sK~~g~-~g~G~~ 209 (382)
T 4eb5_A 140 ILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQ-IEVDVEKI--GADMLTISSNDIYGP-KGVGAL 209 (382)
T ss_dssp EEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTT-BCCCHHHH--TCSEEEEETGGGTCC-SSCEEE
T ss_pred eEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCC-cccCcccc--CCCEEEeehHHhcCC-CceEEE
Confidence 88999999999999998 99999999999999 9999996 310 11111222 35665 67898652 137999
Q ss_pred EecHHHHHhhcCCCC----cccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee
Q 011959 326 GGRRDIMEMVAPAGP----MYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (474)
Q Consensus 326 ~~~~~i~~~~~~~~~----~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (474)
+++++. .+.+... .......+.++..+.++.++++.+.+ +...++++++.+++.+.|++ .+.......
T Consensus 210 ~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~ 283 (382)
T 4eb5_A 210 WIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK----IEESYLNGH 283 (382)
T ss_dssp EEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----STTEEECSC
T ss_pred EEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh----CCCeEEeCC
Confidence 888763 1221000 01122334566777777788877654 34455566666666666654 221111111
Q ss_pred ----eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----------------------CcceEEe
Q 011959 400 ----ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFTS 452 (474)
Q Consensus 400 ----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~~~~ 452 (474)
.+.++++.+... ...++.+.|.++||.+.++. ...+|++
T Consensus 284 ~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~ 349 (382)
T 4eb5_A 284 PEKRLPNNVNVRFSYI--------------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLT 349 (382)
T ss_dssp SSSBCTTEEEEEETTS--------------CHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEE
T ss_pred cccCCCCEEEEEeCCc--------------CHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEE
Confidence 255666665310 12567888889999998753 2457887
Q ss_pred cC--CcHHHHHHHHHHHHHHHhh
Q 011959 453 LA--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 453 ~~--~t~e~i~~~l~~l~~~~~~ 473 (474)
+. .|++++++++++|++++++
T Consensus 350 ~~~~~~~~~i~~~~~~l~~~~~~ 372 (382)
T 4eb5_A 350 LGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 65 6999999999999998764
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=207.52 Aligned_cols=318 Identities=11% Similarity=0.063 Sum_probs=201.6
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHhHh
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARA 177 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~--~~~v~~~~sGseA~~~al~~ar~ 177 (474)
.++|+..+ .+-...++++++++. .++.+...+.++++.+++.++. .+++++++||++|++.+++.
T Consensus 29 ~v~~~~~~---~~~~~~~~~v~~a~~-------~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~--- 95 (374)
T 2aeu_A 29 ALYDLSGL---SGGFLIDEKDKALLN-------TYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILA--- 95 (374)
T ss_dssp GCEECSSC---CCCCCCCHHHHHHHT-------STTHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH---
T ss_pred ceeeeccc---CCCCCCCHHHHHHHH-------HhcCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHh---
Confidence 45576654 211225788888875 2333455567788888777742 27899999999999999994
Q ss_pred hcCCcEEEEEeCCCCCCchh--HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE-EEEcc
Q 011959 178 FTGRERIIKFEGCYHGHADP--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA-IILEP 254 (474)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~--~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~-vi~ep 254 (474)
+ ++++|++.+++||++... .+...|. ++..+ .|+++|++. + +++++ |++++
T Consensus 96 ~-~gd~Vl~~~~~y~~~~~~~~~~~~~g~-------------------~~~~v--~d~~~l~~~-~---~~~~~~v~~~~ 149 (374)
T 2aeu_A 96 L-KPKKVIHYLPELPGHPSIERSCKIVNA-------------------KYFES--DKVGEILNK-I---DKDTLVIITGS 149 (374)
T ss_dssp H-CCSEEEEECSSSSCCTHHHHHHHHTTC-------------------EEEEE--SCHHHHHTT-C---CTTEEEEEECB
T ss_pred C-CCCEEEEecCCCCccHHHHHHHHHcCc-------------------EEEEe--CCHHHHHhc-C---CCccEEEEEcc
Confidence 3 778999999999986532 1222222 23333 488988876 3 36788 88888
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHH
Q 011959 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIM 332 (474)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~ 332 (474)
++|++|. ....+++|.++|++||++||+||+|..+..+...........+|++ ++||+++ |+++||++++++++
T Consensus 150 p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~-g~~~G~~~~~~~~~ 225 (374)
T 2aeu_A 150 TMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLME-GPRGGLLAGKKELV 225 (374)
T ss_dssp CTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSS-SCSCEEEEEEHHHH
T ss_pred CCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCccccc-CcceEEEEECHHHH
Confidence 8888884 2333999999999999999999999543211110000111235766 6999987 58999999999999
Q ss_pred HhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HHHHHHHhhhc----CCeeEEeeeceeE
Q 011959 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGEL----TQGIIDAGKKA----GHAICGGYISGMF 404 (474)
Q Consensus 333 ~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l----~~~L~~~~~~~----~~~~~v~~~g~~~ 404 (474)
+.+.. .......+.+++.++++.++|+.+. .+..++..++.+.+ ++.|.+.+... ++....++.|.++
T Consensus 226 ~~l~~---~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~ 301 (374)
T 2aeu_A 226 DKIYI---EGTKFGLEAQPPLLAGIYRALKNFN-LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVI 301 (374)
T ss_dssp HHHHH---HHHTTTCBCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEE
T ss_pred HHHHH---hhccccCCCCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEE
Confidence 88763 1111223578899999999998753 22344555555555 56666544332 2222345566665
Q ss_pred EEEEecCCCcCcccccccchHHHHHHHHHH-HHCCeEecccC-----CcceEEecCC---cHHHHHHHHHHHHHHHhh
Q 011959 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-----FEAGFTSLAH---SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~-----~~~~~~~~~~---t~e~i~~~l~~l~~~~~~ 473 (474)
++.-. .. . .+.....+++..+ .++||++.|+. ...+|+++.. ++++++++++.|++++++
T Consensus 302 ~~~~~-~~---~-----~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~ 370 (374)
T 2aeu_A 302 KRVYK-DD---T-----INIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKM 370 (374)
T ss_dssp EEEES-SH---H-----HHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHH
T ss_pred Eeecc-cc---c-----ccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHH
Confidence 44310 00 0 0000112355444 46899998863 2357887643 233488999999888875
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=214.46 Aligned_cols=318 Identities=15% Similarity=0.089 Sum_probs=201.9
Q ss_pred CCHHHHHHHHHHHHhcCC---CC---C--CCHHHHHHHHHHHhhCCCC---CeE--EEeCCHHHHHHHHHHHhHhhcC--
Q 011959 116 ADDQVLAALGETMKKGTS---FG---A--PCLLENVLAEMVISAVPSI---EMV--RFVNSGTEACMGVLRLARAFTG-- 180 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~---~~---~--~~~~~~~la~~l~~~~~~~---~~v--~~~~sGseA~~~al~~ar~~~~-- 180 (474)
.++.+.+++.+++..... +. + ...++.+++++++++++.. +++ ++++||++|++.+++.++...+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~ 187 (514)
T 3mad_A 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARAT 187 (514)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhh
Confidence 568888888777764211 11 1 2356678889999988632 677 9999999999999998765431
Q ss_pred ----CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 181 ----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 181 ----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
+++||+..++|++. ...+...|..+..++...... -|+++|++.+++ ++++|++++++
T Consensus 188 ~g~~~d~Vi~~~~~~~~~-~~~~~~~G~~v~~v~~~~~~~--------------~d~~~Le~~i~~---~~~~v~~~~~~ 249 (514)
T 3mad_A 188 KGITAPEAVVPVSAHAAF-DKAAQYFGIKLVRTPLDADYR--------------ADVAAMREAITP---NTVVVAGSAPG 249 (514)
T ss_dssp HCCSSCEEEEETTSCTHH-HHHHHHHTCEEEEECBCTTSC--------------BCHHHHHHHCCT---TEEEEEEETTC
T ss_pred cCCCCCeEEEeCccchHH-HHHHHHcCCeeEEeeeCCCCC--------------CCHHHHHHHhcc---CCEEEEEeCCC
Confidence 26788887777763 344444454332221111000 189999999873 68899999999
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c-----cCC---CccccccCCCCceeehhhhcCCCcceEEEEe
Q 011959 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R-----LAY---GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 327 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r-----~g~---~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~ 327 (474)
+++|.+.+ +++|+++|++||++||+||+|++| . .|. .+.....|+...+.+++|.+.+|+++|++++
T Consensus 250 nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~ 325 (514)
T 3mad_A 250 YPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILY 325 (514)
T ss_dssp TTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEE
T ss_pred CCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEE
Confidence 99999988 999999999999999999999876 3 122 2333344553334467899888899999988
Q ss_pred cHHHHHhhcCC-CC-----cccccCC--CCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE
Q 011959 328 RRDIMEMVAPA-GP-----MYQAGTL--SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (474)
Q Consensus 328 ~~~i~~~~~~~-~~-----~~~~~t~--~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (474)
+++.+...... .. .+...++ +.+.....+..++++.+.. +++.+++.++++++++.|+++ . ++. .
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~-~ 401 (514)
T 3mad_A 326 RRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI-P--SLK-I 401 (514)
T ss_dssp SSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-T--TCE-E
T ss_pred eCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC-C--CeE-E
Confidence 87765443210 00 0000111 1222223344444444332 456777778888888887763 1 111 1
Q ss_pred EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-CcceEEec---CCcHHHHHHHHHHHHHHHh
Q 011959 397 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSL---AHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 397 v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~~~~---~~t~e~i~~~l~~l~~~~~ 472 (474)
+.....++++..... ...++.+.|.++||++.... .+.++++. ..+++++++++++|+++++
T Consensus 402 ~~~~~~~~~~~~~~~--------------~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~ 467 (514)
T 3mad_A 402 LGDPLWVIAVASDEL--------------NIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVA 467 (514)
T ss_dssp SSCCSSEEEEECSSS--------------CHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHH
T ss_pred eCCCeEEEEEeCCCC--------------CHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 112233545543110 12578899999999884333 23456643 3467999999999999886
Q ss_pred h
Q 011959 473 Q 473 (474)
Q Consensus 473 ~ 473 (474)
+
T Consensus 468 ~ 468 (514)
T 3mad_A 468 Q 468 (514)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=208.55 Aligned_cols=320 Identities=13% Similarity=0.080 Sum_probs=202.1
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHh-c-CCCC----C-CCH----HHHHHHHHHHhhCCCCCeEEEeCCHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKK-G-TSFG----A-PCL----LENVLAEMVISAVPSIEMVRFVNSGTEA 167 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~-~~~~----~-~~~----~~~~la~~l~~~~~~~~~v~~~~sGseA 167 (474)
+.++|+.++ +++ +|+|++++.+++.+ . ..+. + ... ++.+++++++++++.....++++||++|
T Consensus 24 ~~~~~~~~~---~~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a 97 (405)
T 2vi8_A 24 AKIELIASE---NFV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQA 97 (405)
T ss_dssp HSEECCTTC---CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred cceeeccCc---ccC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHH
Confidence 346777655 555 89999999998853 2 1110 1 112 2333456888887533344556788999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhH--HHhcCCCCccCCCCCCCCCCCCCCCceEEcc------CCCHHHHHHH
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAP------FNDVSALENL 239 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~------~~d~~~le~~ 239 (474)
++.+++.+ ..++++|++.+++|++..... +...|.+. .++.++ ..|+++|++.
T Consensus 98 ~~~a~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~-----------------~~~~~~~~~~~~~~d~~~l~~~ 158 (405)
T 2vi8_A 98 NMAVYFTV--LEHGDTVLGMNLSHGGHLTHGSPVNFSGVQY-----------------NFVAYGVDPETHVIDYDDVREK 158 (405)
T ss_dssp HHHHHHHH--CCTTCEEEEECGGGTCCTTTTCTTSHHHHHS-----------------EEEEECBCTTTCSBCHHHHHHH
T ss_pred HHHHHHHh--cCCCCEEEEecccccchhcccchhhhcccee-----------------EEEecccccccCCcCHHHHHHH
Confidence 99999964 445677888877655542211 11112100 011111 1289999999
Q ss_pred HhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCC-CCcee--ehhhhc
Q 011959 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGV-TPDLT--TLGKII 316 (474)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~-~pdi~--t~sK~l 316 (474)
++++ ++++|+++|.+ .|...+ +++|+++|++||++||+||+|+....+.... ..++ .+|++ ++||++
T Consensus 159 i~~~--~~~~v~~~~~~--~~~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~--~~~~~~~di~~~s~sK~~ 228 (405)
T 2vi8_A 159 ARLH--RPKLIVAAAAA--YPRIID----FAKFREIADEVGAYLMVDMAHIAGLVAAGLH--PNPVPYAHFVTTTTHKTL 228 (405)
T ss_dssp HHHH--CCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS--CCSTTTCSEEEEESSSTT
T ss_pred HHhc--CCeEEEEeCCC--CCccCC----HHHHHHHHHHcCCEEEEEccccccccccCcC--CCccccCCEEEEeccccC
Confidence 8742 35677775533 243434 9999999999999999999997212211110 1111 46776 799999
Q ss_pred CCCcceEEEEecHHHHHhhcCCCCcccccCCCC-ChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 317 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG-NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 317 ~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
+|+.. |++++++++++.+.. .....++++ ++..++++.++++.+.+ +++.++++++++++.+.|+++ +
T Consensus 229 ~g~~g-G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g 300 (405)
T 2vi8_A 229 RGPRG-GMILCQEQFAKQIDK---AIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE----G 300 (405)
T ss_dssp CCCSC-EEEEECHHHHHHHHH---HHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred CCCCC-eEEEEcHHHHHHHHh---hhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC----C
Confidence 85433 999999999887753 111123333 56677777788887654 567778888888888888765 3
Q ss_pred CeeEE-eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------CcceEEecC------C
Q 011959 393 HAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSLA------H 455 (474)
Q Consensus 393 ~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------~~~~~~~~~------~ 455 (474)
+.... .+.+.++++.+.... .....+.+.|.++||.+.++. ...+|+++. +
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~ 368 (405)
T 2vi8_A 301 FTLVSGGTDNHLLLVDLRPQQ------------LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGF 368 (405)
T ss_dssp CEEGGGSCSSSEEEEECGGGT------------CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTC
T ss_pred CeEecCCCCceEEEEEccCCC------------CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCC
Confidence 22111 135777777764210 012467788889999998742 234677544 6
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011959 456 SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~ 473 (474)
+++++++++++|++++++
T Consensus 369 ~~~~i~~~~~~l~~~~~~ 386 (405)
T 2vi8_A 369 GLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp CHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 899999999999998864
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=213.09 Aligned_cols=327 Identities=13% Similarity=0.074 Sum_probs=197.8
Q ss_pred CEEEe-ccCChhhccCCC-CCHHHHHHHHHHHHhc-----CCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHH
Q 011959 99 NEYID-YVGSWGPAIIGH-ADDQVLAALGETMKKG-----TSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171 (474)
Q Consensus 99 ~~~iD-~~~~~~~~~lG~-~~p~v~~a~~~~~~~~-----~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~a 171 (474)
|+|+| |.++ ++||+ .||.+.+++.++++.. .....+.....+|.+++++++ +.+..++++||++|++.+
T Consensus 3 ~~~~~~~~~~---~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~-~~~~~i~~~~G~~a~~~a 78 (357)
T 3lws_A 3 NRLRTSFQQT---TGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVL-GMDDAVFFPSGTMAQQVA 78 (357)
T ss_dssp CHHHHHHHTC---SEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHH-TCSEEEEESCHHHHHHHH
T ss_pred chhhhHHHhh---cccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHh-CCCcEEEecCcHHHHHHH
Confidence 34566 3344 78888 4888888888877651 111123355678888888877 456677779999999999
Q ss_pred HHHhHhhcCCcEEEEEeCCCCCCchh---HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 172 LRLARAFTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~---~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
++.... .+++++|+.++.+|..... .....|..+..+ +...+ .-|+++|++. . +++
T Consensus 79 l~~~~~-~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v--~~~~~-------------~~d~~~l~~~----~-~~~ 137 (357)
T 3lws_A 79 LRIWSD-ETDNRTVAYHPLCHLEIHEQDGLKELHPIETILV--GAADR-------------LMTLDEIKAL----P-DIA 137 (357)
T ss_dssp HHHHHH-HHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEEC--SCTTS-------------CCCHHHHHTC----C-SCS
T ss_pred HHHHhh-cCCCcEEEecccceeeeeccchhhhccCcEEEEe--cCCCC-------------CcCHHHHhcC----c-Ccc
Confidence 985322 2222266666766653322 122223322211 11111 1178888765 1 367
Q ss_pred EEEEccccCCC-CcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--ccCCCccccccCCCCce--eehhhhcCCCcce
Q 011959 249 AIILEPVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVTPDL--TTLGKIIGGGLPV 322 (474)
Q Consensus 249 ~vi~ep~~~~~-G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~~pdi--~t~sK~l~~G~~i 322 (474)
+|++++++|++ |.+.+ .+.+++|.++|++||++||+||+|. +. ..+.... . +....|+ .++||++++. ..
T Consensus 138 ~v~~~~p~np~~G~~~~-~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~-~~~~~d~~~~s~sK~~~~~-~g 213 (357)
T 3lws_A 138 CLLLELPQREIGGVAPA-FSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAA-E-IAGLFDSIYISFYKGLGGI-AG 213 (357)
T ss_dssp EEEEESSBGGGTSBCCC-HHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHH-H-HHTTSSEEEEESSSTTCCS-SC
T ss_pred eEEEEcccccCCceeCC-HHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChH-H-HHhcCCEEEEeccccCCCC-ce
Confidence 88888887775 66554 5559999999999999999999985 11 1121111 1 1112344 4899999532 22
Q ss_pred EEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeE-Eeeec
Q 011959 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYIS 401 (474)
Q Consensus 323 G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g 401 (474)
|++++++++++.+......+..+.+. ....++++.++|+... +..++..++.+++.+.|+++ .++... .+..+
T Consensus 214 g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~ 287 (357)
T 3lws_A 214 AILAGPAAFCQTARIWKRRYGGDLIS-LYPYIVSADYYYELRK--DRMGQYYEQAKQLAEQFNAL---PGVHTTPEVPVS 287 (357)
T ss_dssp EEEEECHHHHHHHHHHHHHTTCCCSC-CHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHTS---TTEEEESSSCSS
T ss_pred EEEEcCHHHHHHHHHHHHHhcCCccc-chHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhC---CCCeeccCCCcc
Confidence 88899999988875211111222222 3334455556776532 23344567777777777653 122221 24567
Q ss_pred eeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC---c--ceEEe-----cCCcHHHHHHHHHHHHHHH
Q 011959 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---E--AGFTS-----LAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~--~~~~~-----~~~t~e~i~~~l~~l~~~~ 471 (474)
.++++.+... .......+.+.|.++||++.++.. + .++++ +..+++++++++++|.+++
T Consensus 288 ~~~~~~~~~~-----------~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 288 NMFHLHFDGQ-----------AADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp SEEEEEEESC-----------HHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred eEEEEEecCC-----------hHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 7777777431 112235778889999999988731 2 34553 3468999999999998875
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-23 Score=203.75 Aligned_cols=285 Identities=14% Similarity=0.089 Sum_probs=189.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
++++...++++.++++++.. +.++++||++|++.+++.+ ..++++|++.++.||+...........
T Consensus 49 ~~~~~~~~l~~~la~~~~~~-~~i~~~sGt~a~~~~~~~~--~~~g~~vl~~~~~~~~~~~~~~~~~~~----------- 114 (386)
T 1cs1_A 49 RGNPTRDVVQRALAELEGGA-GAVLTNTGMSAIHLVTTVF--LKPGDLLVAPHDCYGGSYRLFDSLAKR----------- 114 (386)
T ss_dssp TCCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHHHTT-----------
T ss_pred CCCccHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHH--hCCCCEEEEecCCcHhHHHHHHHHHHh-----------
Confidence 35566677778888777533 5566678899999999953 445678999999998743322111110
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~ 294 (474)
.+.++..++.+|+++|++.++. ++++|++++++|++|.+.+ +++|+++|++||++||+||+|+++ ..
T Consensus 115 -----~g~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~ 182 (386)
T 1cs1_A 115 -----GCYRVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ 182 (386)
T ss_dssp -----TSCEEEEECTTCHHHHHHHHHT---CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC
T ss_pred -----cCCEEEEeCCCCHHHHHHhhcc---CCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 1124566777799999999973 5789999999999999998 999999999999999999999876 32
Q ss_pred CCCccccccCCCCceeehhhhcCC-Ccce-EEEEecH-HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 295 AYGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 295 g~~~~~~~~g~~pdi~t~sK~l~~-G~~i-G~~~~~~-~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
.. . .++....+.+++|++++ |.++ |++++++ ++++.+.. .....+.+.++++++++.++++.+ +...+
T Consensus 183 -~~--~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 253 (386)
T 1cs1_A 183 -NP--L-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW---WANNIGVTGGAFDSYLLLRGLRTL--VPRME 253 (386)
T ss_dssp -CG--G-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH---HHHHHTCBCCHHHHHHHHHHHTTH--HHHHH
T ss_pred -Cc--c-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhcccHH--HHHHH
Confidence 11 1 23433334489999984 5676 9998886 78887762 223334567899888877777543 23445
Q ss_pred HHHHHHHHHHHHHHHHhh--h--cCCee----------EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC
Q 011959 372 YLNKITGELTQGIIDAGK--K--AGHAI----------CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~--~--~~~~~----------~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (474)
++.++.+.+.+.|+++.. + ++... ..++.|.++.+.+.+. ...+.+.|.++
T Consensus 254 ~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~ 318 (386)
T 1cs1_A 254 LAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD---------------EQTLRRFLGGL 318 (386)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC---------------HHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC---------------HHHHHHHHHhC
Confidence 555666666666554210 0 01000 0134588888877421 14566777888
Q ss_pred CeEeccc--C----------------------------CcceEEe--cCCcHHHHHHHHHHHHHH
Q 011959 438 GVYFAPS--Q----------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 438 Gv~v~~~--~----------------------------~~~~~~~--~~~t~e~i~~~l~~l~~~ 470 (474)
||++.+. + ...+|++ ...++++++.+.+.|+++
T Consensus 319 gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 319 SLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp SSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 9988631 1 2356765 445667777777766654
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-24 Score=213.66 Aligned_cols=330 Identities=15% Similarity=0.080 Sum_probs=188.4
Q ss_pred EEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCC------CCCHHHHHHHHHHHhhCC-CCCeEEEeC
Q 011959 92 HMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG------APCLLENVLAEMVISAVP-SIEMVRFVN 162 (474)
Q Consensus 92 ~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~------~~~~~~~~la~~l~~~~~-~~~~v~~~~ 162 (474)
+.++.++..|+|+.++ +..+|++++++.+++.+. .... ...+...++.++++++++ ..+++++++
T Consensus 14 ~~~~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ 87 (400)
T 3vax_A 14 LVPRGSHMTYLDAAAT------TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTS 87 (400)
T ss_dssp --------CCCCCCCC------SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEES
T ss_pred CCcccCCcEEecCCCC------CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeC
Confidence 4456677788998765 246899999999998753 1111 123456789999999986 457999999
Q ss_pred CHHHHHHHHHHHhHhh--cCCc-EEEEEeCCCCCCchhHHHh--cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHH
Q 011959 163 SGTEACMGVLRLARAF--TGRE-RIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (474)
Q Consensus 163 sGseA~~~al~~ar~~--~~~~-~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le 237 (474)
||++|++.+++....+ .+++ .|++.++.|++........ .|..+..++... .+ .-|+++|+
T Consensus 88 g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~ 153 (400)
T 3vax_A 88 GATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP-SG-------------RISVEGVM 153 (400)
T ss_dssp CHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT-TC-------------CCCHHHHH
T ss_pred CHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC-CC-------------CcCHHHHH
Confidence 9999999999954211 3456 7877777776644433332 232222111110 00 01799999
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhh
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKI 315 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~ 315 (474)
+.+++ ++++|++++++|++|.+.+ +++|.++|++||++||+||+|+.... ..+..+. +|++ +++|.
T Consensus 154 ~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~~~----~~~~~~~-~d~~~~s~~K~ 221 (400)
T 3vax_A 154 ERLRP---DTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQGYGKV----PGDLTTP-IDMISISGHKI 221 (400)
T ss_dssp TTCCT---TEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTTTTTS----GGGGGSC-CSEEEEETGGG
T ss_pred HhcCC---CceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhhcCCC----CcChhhc-CcEEEEeHHHh
Confidence 88863 6899999999999999998 99999999999999999999962111 1112233 7776 56795
Q ss_pred cCCCcceEEEE-ecHH-HH---HhhcCC----CCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHH
Q 011959 316 IGGGLPVGAYG-GRRD-IM---EMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGI 384 (474)
Q Consensus 316 l~~G~~iG~~~-~~~~-i~---~~~~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L 384 (474)
++ +.++|+++ ++++ +. ..+.+. .........+.++.++++..++++.+.+ ++..++++++.+++.+.|
T Consensus 222 ~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L 300 (400)
T 3vax_A 222 GA-PKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGL 300 (400)
T ss_dssp TS-CSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 54 33588888 7762 11 112210 0001122345677788877788887654 456666667777777766
Q ss_pred HHHhhhcCCeeEEe---eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------------
Q 011959 385 IDAGKKAGHAICGG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------------- 445 (474)
Q Consensus 385 ~~~~~~~~~~~~v~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------- 445 (474)
+ . . ++....+ ..+.++.+.+... ....+.+.|. +||.+.++.
T Consensus 301 ~-~-~--~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~ 361 (400)
T 3vax_A 301 A-S-T--SFQVNGDQDHVVPHILNLSFEDV--------------DAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAM 361 (400)
T ss_dssp T-T-T--TCEECSCTTSBCTTEEEEECTTC--------------CHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTT
T ss_pred C-C-C--CEEEeCCcccCCCCEEEEEeCCC--------------CHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHc
Confidence 5 2 1 2211111 1234555554311 1256778888 999887642
Q ss_pred -------CcceEEec---CCcHHHHHHHHHHHHHHHhh
Q 011959 446 -------FEAGFTSL---AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 -------~~~~~~~~---~~t~e~i~~~l~~l~~~~~~ 473 (474)
...+|+++ ..|++++++++++|++++++
T Consensus 362 g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 362 GLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp TCCHHHHTSEEEEEEEEC--------------------
T ss_pred CCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 24567765 56899999999999998764
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=203.83 Aligned_cols=313 Identities=14% Similarity=0.055 Sum_probs=182.1
Q ss_pred CHHHHHHHHHHHHhcCCCCC----------CCHHHHHHH-HHHHhhCCCCCeE-EEeCCHHHHHHHHHHHhHhhcCCcEE
Q 011959 117 DDQVLAALGETMKKGTSFGA----------PCLLENVLA-EMVISAVPSIEMV-RFVNSGTEACMGVLRLARAFTGRERI 184 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~~----------~~~~~~~la-~~l~~~~~~~~~v-~~~~sGseA~~~al~~ar~~~~~~~i 184 (474)
+|+|++++.+++.+...+++ ..+...+++ +++++.+ +.+.+ ++++||++|++.+++.+ ..+++.|
T Consensus 45 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~v~~~~Gs~a~~~al~~~--~~~gd~V 121 (425)
T 3ecd_A 45 SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLF-NAGHANVQPHSGAQANGAVMLAL--AKPGDTV 121 (425)
T ss_dssp CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHH-TCSEEECCCSSHHHHHHHHHHHH--CCTTCEE
T ss_pred CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHh-CCCCceeecCchHHHHHHHHHHc--cCCCCEE
Confidence 99999999998853211111 112345555 6666666 45555 45999999999999963 4567889
Q ss_pred EEEeCCCCCCc-hhHH-HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcc
Q 011959 185 IKFEGCYHGHA-DPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 262 (474)
Q Consensus 185 i~~~~~yhg~~-~~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i 262 (474)
++.+++|++.. .+.. ...|..+....++..+. . ..-|+++|++.+++. ++++|++++.++ |..
T Consensus 122 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~---~~~d~~~l~~~i~~~--~~~~v~~~~~~~--~~~ 186 (425)
T 3ecd_A 122 LGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRD--------T---MLIDYDQVEALAQQH--KPSLIIAGFSAY--PRK 186 (425)
T ss_dssp EEECC------------------CEEEEECCCTT--------T---SSCCHHHHHHHHHHH--CCSEEEEECSCC--CSC
T ss_pred EEcccccccceecchhhhhcccceeeeecCCCcc--------c---CccCHHHHHHHHhhc--CCcEEEEccccC--CCc
Confidence 99999988732 2221 12222111101110000 0 011899999999743 467777774322 334
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEec-HHHHHhhcC
Q 011959 263 APKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR-RDIMEMVAP 337 (474)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~-~~i~~~~~~ 337 (474)
.+ +++|+++|++||++||+||+| .|+ +.+..... +. .+|++ ++||++ +|+++||++++ +++.+.+..
T Consensus 187 ~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~--~~-~~di~~~s~sK~l-~g~~~g~~~~~~~~~~~~~~~ 258 (425)
T 3ecd_A 187 LD----FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP--VE-HAHVVTSTTHKTL-RGPRGGFVLTNDEEIAKKINS 258 (425)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--GG-TCSEEEEESSGGG-CCCSCEEEEESCHHHHHHHHH
T ss_pred CC----HHHHHHHHHHcCCEEEEECcChHhhhhcccccCc--hh-cCcEEEecCCccc-CCCCcEEEEeCCHHHHHHHHh
Confidence 44 899999999999999999996 666 54433221 11 14665 688999 56789999888 567766652
Q ss_pred CCCcccccCCCCChHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE-eeeceeEEEEEecCCC
Q 011959 338 AGPMYQAGTLSGNPLAMTAGIHTLKRLK-E--PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPV 413 (474)
Q Consensus 338 ~~~~~~~~t~~~~~~~~aaa~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~g~~~~i~~~~~~~ 413 (474)
....+.+.+.++..++++.+++.... + +++.++++++.+++++.|.+. ++.... .+.+.++++.+....
T Consensus 259 --~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~- 331 (425)
T 3ecd_A 259 --AVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG----GVDLVTGGTDNHLLLVDLRPKG- 331 (425)
T ss_dssp --HHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECGGGT-
T ss_pred --hhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC----CCeeccCCCCceEEEEEeCCCC-
Confidence 11122122334444444444554332 2 367777888888888888763 322111 135667777664211
Q ss_pred cCcccccccchHHHHHHHHHHHHCCeEec----ccC------CcceEEe------cCCcHHHHHHHHHHHHHHHhh
Q 011959 414 YNFEDAKKSETTKFARFYRGMLEEGVYFA----PSQ------FEAGFTS------LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~------~~~~~~~------~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.....+.+.|.++||++. |+. ...+|++ ..++++++++++++|++++++
T Consensus 332 -----------~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~ 396 (425)
T 3ecd_A 332 -----------LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEA 396 (425)
T ss_dssp -----------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----------CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhc
Confidence 112467778889999998 331 1235653 334699999999999998764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=209.68 Aligned_cols=314 Identities=13% Similarity=0.123 Sum_probs=210.0
Q ss_pred CCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC-CCC-eEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCC
Q 011959 116 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~-~~~-~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (474)
.++++++++.+++.. .+. ++.....++.+.++++++ ..+ ++++++||++|++.+++.. ..++++|++.+++|+
T Consensus 29 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~--~~~gd~vl~~~~~~~ 104 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--NFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL--LEEGDRVLIAVNGIW 104 (396)
T ss_dssp CCHHHHHHTTSCCCC--TTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH--CCTTCEEEEEESSHH
T ss_pred CCHHHHHHhcccccc--CCChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHh--cCCCCeEEEEcCCcc
Confidence 478888887765422 121 122446788999998886 345 7999999999999999953 445678999999999
Q ss_pred CCch-hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHH
Q 011959 193 GHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (474)
Q Consensus 193 g~~~-~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (474)
+... ......|..+..++... .+ ..|+++|++.++++ ++++|++++++|++|.+.+ +++
T Consensus 105 ~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~~ 164 (396)
T 2ch1_A 105 AERAVEMSERYGADVRTIEGPP-DR-------------PFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP----LEG 164 (396)
T ss_dssp HHHHHHHHHHTTCEEEEEECCT-TS-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred cHHHHHHHHHcCCceEEecCCC-CC-------------CCCHHHHHHHHHhC--CCCEEEEECCCCCCceecC----HHH
Confidence 8531 13333444332211110 00 12899999999742 4678888888889999998 888
Q ss_pred HHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee--hhhhcCCCcceEEEEecHHHHHhhcCCC----Ccc--
Q 011959 272 IRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAPAG----PMY-- 342 (474)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~~i~~~~~~~~----~~~-- 342 (474)
|.++|++||++||+||+|. + .. ..... ...+|+++ ++|.++++.++|++++++++++.+...+ ..+
T Consensus 165 i~~l~~~~~~~li~Dea~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (396)
T 2ch1_A 165 VGQICHQHDCLLIVDAVAS-LCGV--PFYMD--KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWD 239 (396)
T ss_dssp HHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGC
T ss_pred HHHHHHHcCCEEEEEcccc-ccCC--ccchh--hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEec
Confidence 9999999999999999996 3 11 11112 22367765 5599987677899999999888775311 000
Q ss_pred --------------cccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe--eecee
Q 011959 343 --------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG--YISGM 403 (474)
Q Consensus 343 --------------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~--~~g~~ 403 (474)
....++.+..++.++.++|+.+.+ ++..++++++++++.+.|+++ ...+..... ..+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~ 317 (396)
T 2ch1_A 240 LLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM--GLDIFVKDPRHRLPTV 317 (396)
T ss_dssp HHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--TCCBSSCSGGGBCTTE
T ss_pred hHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCeeccCCccccCCce
Confidence 112234577788888888887633 456777888888888888776 222211100 12346
Q ss_pred EEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEec---CCcHHHHHHHHHHHHHHHhh
Q 011959 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~~---~~t~e~i~~~l~~l~~~~~~ 473 (474)
+++.+... ....++.+.|+++ ||.+.++. ...+|+++ ..+++++++++++|++++++
T Consensus 318 ~~~~~~~~-------------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~ 382 (396)
T 2ch1_A 318 TGIMIPKG-------------VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 382 (396)
T ss_dssp EEEECCTT-------------CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCC-------------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence 66665311 0125688888875 99998753 34678876 35899999999999998864
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=205.76 Aligned_cols=333 Identities=14% Similarity=0.072 Sum_probs=199.0
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC---CC-----CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---AP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---~~-----~~~~~~la~~l~~~~~-~~~~v~~~~sGseA 167 (474)
+|..|||+.++ ++.+|.+++++.+++.+...+. +. .+...++.++++++++ ..++++|++||++|
T Consensus 17 ~~~~~Ld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 90 (432)
T 3a9z_A 17 NRKVYMDYNAT------TPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTES 90 (432)
T ss_dssp -CCEECBTTTC------CCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCcEEeeCCcc------CCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHH
Confidence 56788887665 2579999999999987632111 11 1234688888888886 45789999999999
Q ss_pred HHHHHHHhH-hh-----cCCcEEEEEeCCCCCCch---------------hHH-HhcCCCCccCCCCCCCCCCCCCCCce
Q 011959 168 CMGVLRLAR-AF-----TGRERIIKFEGCYHGHAD---------------PFL-VKAGSGVATLGLPDSPGVPKGATYET 225 (474)
Q Consensus 168 ~~~al~~ar-~~-----~~~~~ii~~~~~yhg~~~---------------~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~ 225 (474)
++.+++.+. .+ ..+++|++.+++||++.. ..+ ...|..+..++.....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~--------- 161 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNG--------- 161 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTS---------
T ss_pred HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccC---------
Confidence 999999652 11 256889999999988520 011 11233222211110001
Q ss_pred EEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC----------CEEEEeccccCcccC
Q 011959 226 LTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG----------ALLIFDEVMTGFRLA 295 (474)
Q Consensus 226 ~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g----------~llI~DEv~~g~r~g 295 (474)
..|+++|++.++ +++++|++++++|++|.+.+ +++|.++|++|| ++||+||+|..+..
T Consensus 162 ----~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~- 229 (432)
T 3a9z_A 162 ----QVEVEDILAAVR---PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR- 229 (432)
T ss_dssp ----SCCHHHHHHTCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS-
T ss_pred ----CcCHHHHHHhcc---CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc-
Confidence 027899988876 36889999999999999999 889999999999 99999999953221
Q ss_pred CCccccccCCCCcee--ehhhhcCCCcceEEEEecHHH-HHhhcCCC----CcccccCCCCChHHHHHHHHHHHHhcC--
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDI-MEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKE-- 366 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i-~~~~~~~~----~~~~~~t~~~~~~~~aaa~aal~~~~~-- 366 (474)
..... ...+|++ +++|.+| +++||+++++++ ...+.+.. ......+++.|+++++++.++|+.+++
T Consensus 230 -~~~~~--~~~~d~~~~s~~K~~g--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~ 304 (432)
T 3a9z_A 230 -RVDVE--DLGVDFLTIVGHKFYG--PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENC 304 (432)
T ss_dssp -CCCHH--HHCCSEEEEEGGGTTC--CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred -ccChh--hcCCCEEEEehhHhcC--CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhH
Confidence 11111 1246765 5799874 579999998775 33332100 001223456788888888888887654
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh-hhcCCee---EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH----HCC
Q 011959 367 PGTYEYLNKITGELTQGIIDAG-KKAGHAI---CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML----EEG 438 (474)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~---~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~G 438 (474)
+++.++++++++++.+.|+++. ....+.. .....+.++.+.+.+... +. ..+.+.+. +.|
T Consensus 305 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~l~~i~~~~G 372 (432)
T 3a9z_A 305 ETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQL---------RG---YMVLAQCQTLLASVG 372 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTC---------CH---HHHHHHCSSEECBSS
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCC---------cH---HHHHHHhcCeEEecc
Confidence 5667778888888888887742 1110000 012335566666643110 11 22333221 223
Q ss_pred eEeccc------------C------CcceEEecCC--cHHHHHHHHHHHHHHHhh
Q 011959 439 VYFAPS------------Q------FEAGFTSLAH--SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 439 v~v~~~------------~------~~~~~~~~~~--t~e~i~~~l~~l~~~~~~ 473 (474)
+.+.+. + ...+|+++.. |++++++++++|++++++
T Consensus 373 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 373 ASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp CGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 222221 1 1457887554 899999999999998764
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=201.22 Aligned_cols=310 Identities=14% Similarity=0.059 Sum_probs=203.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCch
Q 011959 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (474)
++++++++.+++++.. + .+.....++.+.+++++ +.+++++++||++|++.+++..+ ..++++|++.+++|++..
T Consensus 19 ~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~al~~~~~~~~-~~~gd~Vl~~~~~~~~~~- 93 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGW-I-TTGPKNQELEAAFCRLT-GNQYAVAVSSATAGMHIALMALG-IGEGDEVITPSMTWVSTL- 93 (393)
T ss_dssp CHHHHHHHHHHHHHTC-C-SSSHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHHHH-
T ss_pred CHHHHHHHHHHHhcCC-c-CCChHHHHHHHHHHHHh-CCCcEEEecChHHHHHHHHHHcC-CCCCCEEEeCCCccHhHH-
Confidence 5889999999987753 2 24567778888888887 45689999999999999999632 345678999999998854
Q ss_pred hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHH
Q 011959 197 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 197 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
..+...|..+..++... .+. ..|+++|++.+++ ++++|++++ ++|.+.+ +++|.++|
T Consensus 94 ~~~~~~g~~~~~v~~~~-~~~------------~~d~~~l~~~l~~---~~~~v~~~~---~~G~~~~----~~~i~~l~ 150 (393)
T 1mdo_A 94 NMIVLLGANPVMVDVDR-DTL------------MVTPEHIEAAITP---QTKAIIPVH---YAGAPAD----LDAIYALG 150 (393)
T ss_dssp HHHHHTTCEEEEECBCT-TTC------------CBCHHHHHHHCCT---TEEEECCBC---GGGCCCC----HHHHHHHH
T ss_pred HHHHHCCCEEEEEeccC-CcC------------CCCHHHHHHhcCC---CceEEEEeC---CCCCcCC----HHHHHHHH
Confidence 34444454332221110 000 1289999998863 578888765 3566666 99999999
Q ss_pred HHhCCEEEEecccc-Cc-ccCCCccccccCCCCceeeh--h--hhcCCCcceEEEEec-HHHHHhhcCCCCc--------
Q 011959 277 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTL--G--KIIGGGLPVGAYGGR-RDIMEMVAPAGPM-------- 341 (474)
Q Consensus 277 ~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~t~--s--K~l~~G~~iG~~~~~-~~i~~~~~~~~~~-------- 341 (474)
++||++||+||+|+ |+ ..+. .++. +|++++ + |.+++| ++|+++++ +++++.+......
T Consensus 151 ~~~~~~li~D~a~~~g~~~~~~-----~~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~ 223 (393)
T 1mdo_A 151 ERYGIPVIEDAAHATGTSYKGR-----HIGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWD 223 (393)
T ss_dssp HHHTCCBCEECTTCTTCEETTE-----ETTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC---
T ss_pred HHcCCeEEEECccccCCeECCe-----ecCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccchh
Confidence 99999999999997 44 3322 2233 787754 4 888765 79999886 7887766421110
Q ss_pred ---------ccccC----CCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee--EEeeeceeEEE
Q 011959 342 ---------YQAGT----LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGF 406 (474)
Q Consensus 342 ---------~~~~t----~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~v~~~g~~~~i 406 (474)
+...+ +..+++.++++.+.++.+ ++..++.+++.+++++.|.++..+..... ..++.+.++++
T Consensus 224 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v 301 (393)
T 1mdo_A 224 RQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFII 301 (393)
T ss_dssp --------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEE
T ss_pred hhcccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEE
Confidence 00001 345777777777766644 34566666667777777665311110000 12344556777
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc-------------------------ceEEecC--CcHHH
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTSLA--HSSDD 459 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-------------------------~~~~~~~--~t~e~ 459 (474)
.+.... ......++.+.|.++||.+.++..+ .+|+++. +|++|
T Consensus 302 ~~~~~~----------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~ 371 (393)
T 1mdo_A 302 RVDEAR----------CGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESD 371 (393)
T ss_dssp ECCHHH----------HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHH
T ss_pred Eecccc----------cccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHH
Confidence 764200 0001357888999999998875321 3677654 69999
Q ss_pred HHHHHHHHHHHHhh
Q 011959 460 IQHTITAAEKVLRQ 473 (474)
Q Consensus 460 i~~~l~~l~~~~~~ 473 (474)
+++++++|+++++.
T Consensus 372 i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 372 FDRVITALHQIAGQ 385 (393)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998754
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-23 Score=205.33 Aligned_cols=313 Identities=12% Similarity=0.078 Sum_probs=201.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHhhCCC-----CCeEEEeCCHHHHHHHHHHHhH-hhcCCcEEEEE
Q 011959 116 ADDQVLAALGETMKKGTSFGAPC--LLENVLAEMVISAVPS-----IEMVRFVNSGTEACMGVLRLAR-AFTGRERIIKF 187 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~la~~l~~~~~~-----~~~v~~~~sGseA~~~al~~ar-~~~~~~~ii~~ 187 (474)
.+|++++++.+.+.. ++.+. ....++.+++++++.. .+++++++||++|++.+++... ...++++||+.
T Consensus 16 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~ 92 (385)
T 2bkw_A 16 LSGAVQKALDVPSLG---HTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVV 92 (385)
T ss_dssp CCHHHHHTTSCCCCC---TTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEE
T ss_pred chHHHHHHHhccccc---cCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEE
Confidence 467777777654322 22221 2345666777776642 4789999999999999999531 11456788788
Q ss_pred eC-CCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCH
Q 011959 188 EG-CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 188 ~~-~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
+. .||......+...|..+..++.....+ ..|+++|++.+++. ++++|++++++|++|.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~-- 155 (385)
T 2bkw_A 93 STGTFSDRFADCLRSYGAQVDVVRPLKIGE-------------SVPLELITEKLSQN--SYGAVTVTHVDTSTAVLSD-- 155 (385)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEECCSSTTS-------------CCCHHHHHHHHHHS--CCSEEEEESEETTTTEECC--
T ss_pred cCCcchHHHHHHHHHcCCceEEEecCCCCC-------------CCCHHHHHHHHhcC--CCCEEEEEccCCCcCeEcC--
Confidence 55 555542233344444332222100011 02899999999752 5788899999999999998
Q ss_pred HHHHHHHHHHHHh--CCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHH-hhcC----
Q 011959 267 DFLNAIRRITKEN--GALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME-MVAP---- 337 (474)
Q Consensus 267 ~~l~~l~~l~~~~--g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~-~~~~---- 337 (474)
+++|.++|++| |++||+||+|+.... ......+ .+|++ +++|+++++..+|++++++++++ .+.+
T Consensus 156 --l~~i~~~~~~~~~~~~li~D~a~~~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~ 229 (385)
T 2bkw_A 156 --LKAISQAIKQTSPETFFVVDAVCSIGCE--EFEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNG 229 (385)
T ss_dssp --HHHHHHHHHHHCTTSEEEEECTTTTTTS--CCCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHC
T ss_pred --HHHHHHHHHhhCCCCEEEEECccccCCc--ccccccc--CceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCC
Confidence 99999999999 999999999962111 1112222 35665 57898876555799999998877 5420
Q ss_pred -C-C---------C---ccccc----CCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH-HHHhhhcCCee
Q 011959 338 -A-G---------P---MYQAG----TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGI-IDAGKKAGHAI 395 (474)
Q Consensus 338 -~-~---------~---~~~~~----t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~ 395 (474)
. . . .+..+ .++.|+.+++++.++|+.+.+ ++..++++++++++.+.| +++ ++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~----g~~~ 305 (385)
T 2bkw_A 230 HVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL----QLTS 305 (385)
T ss_dssp CCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT----CCEE
T ss_pred CCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc----Ccee
Confidence 0 0 0 00101 135677888888888887653 345666777777777777 543 2211
Q ss_pred EEe-----eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----CcceEEe-cC-----CcHHH
Q 011959 396 CGG-----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTS-LA-----HSSDD 459 (474)
Q Consensus 396 ~v~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~~~-~~-----~t~e~ 459 (474)
..+ ..+.++++.+. + ..++.+.|.++||.+.++. ...+|++ +. .|+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~ 369 (385)
T 2bkw_A 306 VSRYPSNMSAHGLTAVYVA-------------D---PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPY 369 (385)
T ss_dssp SSCSSSTTBCSSCEEEECS-------------C---HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTH
T ss_pred cccCcccccCCceEEEecC-------------C---HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHH
Confidence 111 24666676652 1 2578888899999998763 2357877 43 69999
Q ss_pred HHHHHHHHHHHHhhC
Q 011959 460 IQHTITAAEKVLRQI 474 (474)
Q Consensus 460 i~~~l~~l~~~~~~~ 474 (474)
+++++++|+++++++
T Consensus 370 i~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 370 MKNCFDLIKLALQRK 384 (385)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988653
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-22 Score=198.85 Aligned_cols=257 Identities=14% Similarity=0.107 Sum_probs=181.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
+.++...+|++++++++ +.+.+++++||++|++.+++.+ ...+++||+.++.||+.........
T Consensus 63 ~~~~~~~~l~~~la~~~-g~~~~~~~~sGt~A~~~al~~~--~~~gd~Vi~~~~~y~~~~~~~~~~~------------- 126 (392)
T 3qhx_A 63 TGNPTRTALEAALAAVE-DAAFGRAFSSGMAAADCALRAM--LRPGDHVVIPDDAYGGTFRLIDKVF------------- 126 (392)
T ss_dssp TCCHHHHHHHHHHHHHT-TCSEEEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHTG-------------
T ss_pred CCChHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCCCcchHHHHHHHHH-------------
Confidence 35667788888888888 4568999999999999999953 4566889999999987443321110
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
...+.++..++.+|+++|++.++ +++++|++|+++|++|.+.+ +++|+++|++||++||+||+|+.+
T Consensus 127 ---~~~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~--- 193 (392)
T 3qhx_A 127 ---TGWNVEYTPVALADLDAVRAAIR---PTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP--- 193 (392)
T ss_dssp ---GGGTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT---
T ss_pred ---HhcCcEEEEeCCCCHHHHHHhhC---CCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc---
Confidence 01112466677789999999987 37899999999999999988 999999999999999999999632
Q ss_pred CCccccccCCCCceee--hhhhcCC-C-cceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 296 YGGAQEYFGVTPDLTT--LGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~t--~sK~l~~-G-~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
+.....+..+|+++ ++|.+++ | +++|+++++ +++++.+. ...+..++..+++.+++++..++.+. ...
T Consensus 194 --~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~---~~~~~~g~~~~~~~~~~~~~~l~~l~--~~~ 266 (392)
T 3qhx_A 194 --ALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFA---FLQNGAGAVPGPFDAYLTMRGLKTLV--LRM 266 (392)
T ss_dssp --TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHH---HHHHHHCCCCCHHHHHHHHHHHTTHH--HHH
T ss_pred --ccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHH---HHHHhcCCCCCHHHHHHHHhhhhHHH--HHH
Confidence 11122344567775 9999995 5 789999887 67877775 23334466788998888887775432 334
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCeeEE------------------eeeceeEEEEEecCCCcCcccccccchHHHHHHHH
Q 011959 371 EYLNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (474)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~v------------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (474)
++..++.+++.+.|++ ++.+..+ ++.|.++++++..+ ......+.+
T Consensus 267 ~~~~~~~~~l~~~L~~----~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~------------~~~~~~~~~ 330 (392)
T 3qhx_A 267 QRHSENAAAVAEFLAE----HPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG------------RTAAEQLCA 330 (392)
T ss_dssp HHHHHHHHHHHHHHHT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc------------HHHHHHHHH
Confidence 5556666666666654 3322222 45688999998531 233456666
Q ss_pred HHHHCCeEeccc
Q 011959 433 GMLEEGVYFAPS 444 (474)
Q Consensus 433 ~l~~~Gv~v~~~ 444 (474)
.|...|+.+..+
T Consensus 331 ~l~~~~~~~s~G 342 (392)
T 3qhx_A 331 KTNIFILAESLG 342 (392)
T ss_dssp HCSSSEECSCCC
T ss_pred hCCCceECCCCC
Confidence 666666655443
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-23 Score=203.89 Aligned_cols=317 Identities=16% Similarity=0.113 Sum_probs=193.7
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCC
Q 011959 111 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 190 (474)
Q Consensus 111 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~ 190 (474)
+++| .+|+|++|+.+.+.. ...++.....+|.+++++++ +.+..++++||++|++.+++.... .+++.+|+.++.
T Consensus 23 ~~~g-~~p~v~~ai~~~~~~--~~~~~~~~~~~l~~~la~~~-~~~~~i~~~~g~~a~~~a~~~~~~-~g~~~vvi~~~~ 97 (359)
T 3pj0_A 23 RNVG-VLTEALQNIDDNLES--DIYGNGAVIEDFETKIAKIL-GKQSAVFFPSGTMAQQIALRIWAD-RKENRRVAYHPL 97 (359)
T ss_dssp CBHH-HHHHHTTTSCTTCBC--CBTTBSHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHHHH-HHTCCEEEECTT
T ss_pred cccC-CCHHHHHHHHhhccc--CcccCCHHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHHHh-cCCCcEEEEecc
Confidence 4444 467888888774322 22235677889999999888 455667779999999999986432 233346666666
Q ss_pred CCCCch--hHH-HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCC-CcccCCH
Q 011959 191 YHGHAD--PFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS-GFIAPKP 266 (474)
Q Consensus 191 yhg~~~--~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~-G~i~~~~ 266 (474)
+|.... ... ...|..+..++. ..+ .-|+++|++. . +++++|++++++|++ |.+. +.
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~v~~--~~~-------------~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~-~~ 157 (359)
T 3pj0_A 98 SHLEIHEQDGLKELQQITPLLLGT--ANQ-------------LLTIDDIKSL-R---EPVSSVLIELPQREIGGQLP-AF 157 (359)
T ss_dssp CHHHHSSTTHHHHHHCCEEEECSC--TTS-------------CCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCC-CH
T ss_pred ceeeehhcchHHHhcCceEEecCC--cCC-------------CcCHHHHHhc-c---CCceEEEEEecccCCCcccC-CH
Confidence 654322 122 233443322111 111 0178888876 2 467888888877765 5555 55
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCccc
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQ 343 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~ 343 (474)
+++++|.++|++||++||+||+|..+ ..........+....|++ ++||+++++.. |++++++++++.+......+.
T Consensus 158 ~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~ 236 (359)
T 3pj0_A 158 EELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYG 236 (359)
T ss_dssp HHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhC
Confidence 56999999999999999999998532 110000111111233555 89999986533 777899999888762111112
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeE-EeeeceeEEEEEecCCCcCccccccc
Q 011959 344 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDAKKS 422 (474)
Q Consensus 344 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g~~~~i~~~~~~~~~~~~~~~~ 422 (474)
.++++.++ .++++..+++... +..++..++.+++.+.|+++ .++... .+..+.++++.+...
T Consensus 237 ~~~~~~~~-~~~a~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~~~~----------- 299 (359)
T 3pj0_A 237 GDLISLYP-YILSADYYFEKRI--GKMAEYFEAAKGLAERFNSC---SGVKTVPEVPVSNMFHVYFENS----------- 299 (359)
T ss_dssp CCCSCCHH-HHHHHHHHHHHHG--GGHHHHHHHHHHHHHHHHTS---TTEEEESSSCSSSEEEEEESSC-----------
T ss_pred CCcchhHH-HHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHhhC---CCceeeccCCcceEEEEEecCc-----------
Confidence 22333333 3444556665442 44556677777787777653 122221 234566667666321
Q ss_pred chHHHHHHHHHHHHCCeEecccCC------cceEEec-----CCcHHHHHHHHHHHHHH
Q 011959 423 ETTKFARFYRGMLEEGVYFAPSQF------EAGFTSL-----AHSSDDIQHTITAAEKV 470 (474)
Q Consensus 423 ~~~~~~~~~~~l~~~Gv~v~~~~~------~~~~~~~-----~~t~e~i~~~l~~l~~~ 470 (474)
.......+.+.|.++||++.++.. ..++++. ..+.+++++++++|.++
T Consensus 300 ~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 300 ADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp HHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 122346788899999999998742 2345533 46899999999999875
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-22 Score=201.32 Aligned_cols=308 Identities=12% Similarity=0.081 Sum_probs=186.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-------C----CHHHHHHHHHHHhhCCC-CCeEEEeCCHHHHHHHHHHHhHhhcCCcE
Q 011959 116 ADDQVLAALGETMKKGTSFGA-------P----CLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRER 183 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~-------~----~~~~~~la~~l~~~~~~-~~~v~~~~sGseA~~~al~~ar~~~~~~~ 183 (474)
.+|+|++++.+++.+....++ . .+++..+.+++++.++. .++ ++++||++|++.+++.. ...++.
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~-i~~~sGt~a~~~~~~~~--~~~gd~ 113 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFAN-VQPNSGSQANQGVYAAL--INPGDK 113 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEE-CCCSSHHHHHHHHHHHH--SCTTCE
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcc-eEeccHHHHHHHHHHHh--cCCCCE
Confidence 389999999998854211111 1 23444555677777752 233 45577899999999963 455688
Q ss_pred EEEEeCCCCCCchhH--HHhcCCCCccCCCCCCCCCCCCCCCceEEccC-----CCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 184 IIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 184 ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
|++.+++|++..... ....|.... .+.++. .|+++|++.+++. ++++|++.+.+
T Consensus 114 vl~~~~~~~~~~~~~~~~~~~g~~~~-----------------~~~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~ 174 (417)
T 3n0l_A 114 ILGMDLSHGGHLTHGAKVSSSGKMYE-----------------SCFYGVELDGRIDYEKVREIAKKE--KPKLIVCGASA 174 (417)
T ss_dssp EEEECC----------------CCSE-----------------EEEECCCTTSSCCHHHHHHHHHHH--CCSEEEECCSS
T ss_pred EEecccccccccchhhhhhhhcceee-----------------eEeccCCCCCCcCHHHHHHHHHhc--CCeEEEECCcc
Confidence 999999887753311 111222111 111111 3899999999742 45677765543
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCceee--hhhhcCCCcceEEEEec-HHH
Q 011959 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGR-RDI 331 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~-~~i 331 (474)
.|.+.+ +++|+++|++||++||+||+| .|+ ..+.... .+. ..|+++ +||+| +|+|+|+++++ +++
T Consensus 175 --~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l-~g~~~G~~~~~~~~~ 244 (417)
T 3n0l_A 175 --YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS--PFP-YAHVVSSTTHKTL-RGPRGGIIMTNDEEL 244 (417)
T ss_dssp --CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--CTT-TCSEEEEESSTTT-CSCSCEEEEESCHHH
T ss_pred --cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCC--ccc-cceEEEeeCcccc-CCCCeeEEEECCHHH
Confidence 377777 999999999999999999997 555 3332111 011 247764 66999 56789999998 788
Q ss_pred HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE-eeeceeEEEE
Q 011959 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFF 407 (474)
Q Consensus 332 ~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~g~~~~i~ 407 (474)
++.+... ...+.+.+.++..+++..+++....+ +++.+++.++.+++.+.|.+. ++.... ...+.++++.
T Consensus 245 ~~~~~~~--~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~ 318 (417)
T 3n0l_A 245 AKKINSA--IFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR----KFKLVSDGTDNHLVLMS 318 (417)
T ss_dssp HHHHHHH--HTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEE
T ss_pred HHHHhhh--hCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC----CceeccCCCCceEEEEE
Confidence 8877531 11222334456666666667765432 456666777777777777763 221100 1234466666
Q ss_pred EecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC----------cceEEec------CCcHHHHHHHHHHHHHHH
Q 011959 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----------EAGFTSL------AHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------~~~~~~~------~~t~e~i~~~l~~l~~~~ 471 (474)
+.... .....+.+.|.++||++.+... ..+++.. .++++++++++++|++++
T Consensus 319 ~~~~~------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l 386 (417)
T 3n0l_A 319 FLDRE------------FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADIL 386 (417)
T ss_dssp CTTSS------------SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cccCC------------CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 53211 0124677788899999875421 2356532 368999999999999988
Q ss_pred hh
Q 011959 472 RQ 473 (474)
Q Consensus 472 ~~ 473 (474)
++
T Consensus 387 ~~ 388 (417)
T 3n0l_A 387 DD 388 (417)
T ss_dssp HT
T ss_pred hc
Confidence 64
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-22 Score=204.44 Aligned_cols=316 Identities=16% Similarity=0.142 Sum_probs=204.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCC------CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh---c----
Q 011959 113 IGHADDQVLAALGETMKKGTSFGAP------CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF---T---- 179 (474)
Q Consensus 113 lG~~~p~v~~a~~~~~~~~~~~~~~------~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~---~---- 179 (474)
.+|.+|++++++.++....+.+... .++..+++++++++++-...+++++||++|+..++++++.+ .
T Consensus 75 ~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~ 154 (474)
T 1wyu_B 75 TMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGR 154 (474)
T ss_dssp CCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3467788988888763222222111 15678899999988852234568899999999999887654 1
Q ss_pred CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCC
Q 011959 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (474)
++++||+.+ .+|+.+...+...|..+..++... .+. -|+++|++.++. ++++|+++++ |++
T Consensus 155 ~r~~Vlv~~-~~h~~~~~~~~~~G~~vv~v~~~~-~~~-------------~d~~~L~~~i~~---~t~~v~~~~p-n~~ 215 (474)
T 1wyu_B 155 TRRVVLVPD-SAHGSNPATASMAGYQVREIPSGP-EGE-------------VDLEALKRELGP---HVAALMLTNP-NTL 215 (474)
T ss_dssp TCCEEEEET-TSCTHHHHHHHHTTCEEEEECBCT-TSS-------------BCHHHHHHHCST---TEEEEEECSS-CTT
T ss_pred CCCEEEEeC-CcChhhHHHHHHCCCEEEEecCCC-CCC-------------cCHHHHHHhhCC---CceEEEEECC-CCC
Confidence 233677655 677777766666555333221110 010 189999999863 6888888875 467
Q ss_pred Ccc-cCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceee--hhhhcCC-----CcceEEEEecHHH
Q 011959 260 GFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIGG-----GLPVGAYGGRRDI 331 (474)
Q Consensus 260 G~i-~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t--~sK~l~~-----G~~iG~~~~~~~i 331 (474)
|.+ .+ +++|.++|++||++||+||+|..+..+. .....++ +|+++ ++|+|++ |+++|++++++++
T Consensus 216 G~~~~~----l~~i~~l~~~~g~~li~Dea~~~~~~g~-~~~~~~g--~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l 288 (474)
T 1wyu_B 216 GLFERR----ILEISRLCKEAGVQLYYDGANLNAIMGW-ARPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHL 288 (474)
T ss_dssp SCCCTT----HHHHHHHHHHHTCEEEEEGGGGGGTTTT-CCHHHHT--CSEEECCTTTTTCCCCTTSCCCCCCEEECGGG
T ss_pred cccCCC----HHHHHHHHHHcCCEEEEeCchhhhhccC-CCcccCC--CcEEEEeCccccccCCCCCCCCeEEEEEcHHH
Confidence 877 34 9999999999999999999995432221 1122233 67775 5899862 3699999999998
Q ss_pred HHhhcCC-----CC-c----------ccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 332 MEMVAPA-----GP-M----------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 332 ~~~~~~~-----~~-~----------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
++.+... +. + ....++++|+++++++.+.++.+.. .+..+++.++++++.+.|++. .+.
T Consensus 289 ~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~--g~~ 366 (474)
T 1wyu_B 289 APYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK--GYR 366 (474)
T ss_dssp GGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCB
T ss_pred HHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CcE
Confidence 8776410 00 0 0112345788888888888875433 334677788888888888774 222
Q ss_pred CeeEEeeecee--EEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----CcceEEecCC--cHHHHHHH
Q 011959 393 HAICGGYISGM--FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAH--SSDDIQHT 463 (474)
Q Consensus 393 ~~~~v~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~~~~~~--t~e~i~~~ 463 (474)
+.. +.+.+ +++.+. . ......+.+.|.++||++.... ...+|+++.. |+++++++
T Consensus 367 ~~~---~~~~~~~~~~~~~-~------------~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~ 430 (474)
T 1wyu_B 367 VPY---DGPSMHEFVAQPP-E------------GFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAF 430 (474)
T ss_dssp CSS---CSSCCSCEEEBCS-T------------TCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHH
T ss_pred ecC---CCCcceEEEEEcC-C------------CCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHH
Confidence 211 11122 333331 0 0113578889999999863221 2457886554 99999999
Q ss_pred HHHHHHHHh
Q 011959 464 ITAAEKVLR 472 (474)
Q Consensus 464 l~~l~~~~~ 472 (474)
+++|+++++
T Consensus 431 ~~~L~~~~~ 439 (474)
T 1wyu_B 431 AEAMGALLK 439 (474)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998875
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=215.68 Aligned_cols=344 Identities=11% Similarity=0.063 Sum_probs=200.2
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHH-hhC-----C-CCCeEEEeCCHHHHHHHHHHHh--Hhh
Q 011959 111 AIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVI-SAV-----P-SIEMVRFVNSGTEACMGVLRLA--RAF 178 (474)
Q Consensus 111 ~~lG~~~p~v~~a~~~~~~~~~~~~---~~~~~~~~la~~l~-~~~-----~-~~~~v~~~~sGseA~~~al~~a--r~~ 178 (474)
+..++.+|.+++++.+.+.. ..|+ +..+++.++++.+. +.. + +.++|++++|+++|+..+++.. +.+
T Consensus 112 g~~~~~~~~~~~al~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l 190 (546)
T 2zy4_A 112 DQLGLDPAAFLHEMVDGILG-CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGL 190 (546)
T ss_dssp HTSCCCHHHHHHHHHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCChHHHHHHHHhhhc-CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhc
Confidence 44567888899988887753 3343 23467777776553 332 1 2479999999999999999852 334
Q ss_pred c-CCcEEEEEeCCCCCCchhHHHhcCCC--CccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 179 T-GRERIIKFEGCYHGHADPFLVKAGSG--VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 179 ~-~~~~ii~~~~~yhg~~~~~~~~~g~~--~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
. +++.|++.+++|+++...+. ..+.+ +..++.....++ .-|+++|++.+. .++++|+++.+
T Consensus 191 ~~~Gd~Vlv~~P~y~~~~~~~~-~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~~~---~~~k~v~l~~p 254 (546)
T 2zy4_A 191 LKAGDKVAIGMPVFTPYIEIPE-LAQYALEEVAINADPSLNW------------QYPDSELDKLKD---PAIKIFFCVNP 254 (546)
T ss_dssp SCTTCEEEEEESCCHHHHHHHH-STTSCCEEEEEECBGGGTT------------BCCHHHHGGGGS---TTEEEEEEESS
T ss_pred CCCCCEEEEeCCCCccHHHHHH-HcCCCcEEEEEecCcccCC------------CCCHHHHHHhhC---CCCeEEEEECC
Confidence 4 46789999999998655432 22211 111111000000 017888887663 36787777777
Q ss_pred cCCCCcccCCHHHHHHHHHHH--HHhCCEEEEeccccCcccCCCcccccc-CCCCceeehhhhcC-CCcceEEEEecHH-
Q 011959 256 VGNSGFIAPKPDFLNAIRRIT--KENGALLIFDEVMTGFRLAYGGAQEYF-GVTPDLTTLGKIIG-GGLPVGAYGGRRD- 330 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~--~~~g~llI~DEv~~g~r~g~~~~~~~~-g~~pdi~t~sK~l~-~G~~iG~~~~~~~- 330 (474)
+|++|.+.+.++ +++|.++| ++||++||+||+|.+|..+.....+.. +....+.+|||.+| +|+|+||++++++
T Consensus 255 ~NPtG~~~~~~~-l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~ 333 (546)
T 2zy4_A 255 SNPPSVKMDQRS-LERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQN 333 (546)
T ss_dssp CSSSCBCCCHHH-HHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESSC
T ss_pred CCCCCccCCHHH-HHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEEEEECCHH
Confidence 888998887655 99999999 789999999999998822211111111 11122448999998 7999999998875
Q ss_pred HHHhhcCC---------------------------------CCcccccCCCCChHHHHHHH-H-HHHHhcC-CCHHHHHH
Q 011959 331 IMEMVAPA---------------------------------GPMYQAGTLSGNPLAMTAGI-H-TLKRLKE-PGTYEYLN 374 (474)
Q Consensus 331 i~~~~~~~---------------------------------~~~~~~~t~~~~~~~~aaa~-a-al~~~~~-~~~~~~~~ 374 (474)
+++.+... +......+.+.+.+.+.++. . ....+++ +.+.++++
T Consensus 334 l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r 413 (546)
T 2zy4_A 334 VFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLK 413 (546)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 76665210 00011223455666666532 1 1222333 33333333
Q ss_pred HHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecC----CCcCcccccccchHHHHHHHHHHHHCCeEecccC-----
Q 011959 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG----PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----- 445 (474)
Q Consensus 375 ~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----- 445 (474)
+..+.-++.+.+.+. .++....+..|.++++.+..- +...+.............+.+.+.++||.+.|+.
T Consensus 414 ~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~ 492 (546)
T 2zy4_A 414 QLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSN 492 (546)
T ss_dssp HHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCS
T ss_pred HHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCC
Confidence 333322232322221 222212234455667765310 0000000000000012346677788999999863
Q ss_pred CcceEEecCC-cHHHHHHHHHHHHHHHhh
Q 011959 446 FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 ~~~~~~~~~~-t~e~i~~~l~~l~~~~~~ 473 (474)
.+++|+++.. +++++++++++|++++++
T Consensus 493 ~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 521 (546)
T 2zy4_A 493 RPSGRASLANLNEYEYAAIGRALRKMADE 521 (546)
T ss_dssp SCEEEEESSSSCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 2357888776 899999999999988764
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-22 Score=197.94 Aligned_cols=306 Identities=15% Similarity=0.094 Sum_probs=201.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCC
Q 011959 112 IIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 190 (474)
Q Consensus 112 ~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~ 190 (474)
.+.+.+++..+++.+....+..|+ ++++...+|+++++++++ .+++++++||++|++.+++.. ..++++|++.++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g-~~~~i~~~sG~~ai~~~~~~~--~~~gd~vl~~~~~ 107 (389)
T 3acz_A 31 TFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEG-AAGSAAFGSGMGAISSSTLAF--LQKGDHLIAGDTL 107 (389)
T ss_dssp BBCCSSHHHHHHHHTTCSSCCCBTTTCCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHTTT--CCTTCEEEEESSC
T ss_pred ceecCChHHHHHhhcCCCCCcccCCCCChHHHHHHHHHHHHhC-CCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCC
Confidence 345555544433322211122222 457778899999999884 458888999999999999842 3456789999999
Q ss_pred CCCCchhH---HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHH
Q 011959 191 YHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 267 (474)
Q Consensus 191 yhg~~~~~---~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~ 267 (474)
||+..... +...|. ++..++.+|++++++.+++ ++++|++|+++|++|.+.+
T Consensus 108 y~~~~~~~~~~~~~~g~-------------------~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~--- 162 (389)
T 3acz_A 108 YGCTVSLFTHWLPRFGI-------------------EVDLIDTSDVEKVKAAWKP---NTKMVYLESPANPTCKVSD--- 162 (389)
T ss_dssp CHHHHHHHHHHHHHTTC-------------------EEEEECTTCHHHHHHTCCT---TEEEEEEESSCTTTCCCCC---
T ss_pred chHHHHHHHHHHHHcCC-------------------EEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCCeecC---
Confidence 98854433 222222 3556666799999998863 6899999999999999998
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCC-Ccce-EEEEecH-HHHHhhcCCCCcc
Q 011959 268 FLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRR-DIMEMVAPAGPMY 342 (474)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~-G~~i-G~~~~~~-~i~~~~~~~~~~~ 342 (474)
+++|.++|++||+++|+||+|+++..+. .++..+|++ +++|.+++ |.|+ |++++++ ++++.+.. ..
T Consensus 163 -l~~i~~~~~~~~~~livD~~~~~~~~~~-----~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~---~~ 233 (389)
T 3acz_A 163 -IKGIAVVCHERGARLVVDATFTSPCFLK-----PLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKF---YR 233 (389)
T ss_dssp -HHHHHHHHHHHTCEEEEECTTTCTTTCC-----GGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH---HH
T ss_pred -HHHHHHHHHHcCCEEEEECCCccccccC-----ccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHH---HH
Confidence 9999999999999999999997552111 123457776 79999995 6898 9999998 88887762 22
Q ss_pred cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh----------hhcCCe----eEEeeeceeEEEEE
Q 011959 343 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG----------KKAGHA----ICGGYISGMFGFFF 408 (474)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~----------~~~~~~----~~v~~~g~~~~i~~ 408 (474)
.....+.+++.+.++++.|+.+ +...++..++.+.+.+.|++.. ..++.. ...++.|.++.+++
T Consensus 234 ~~~g~~~~~~~~~~~~~~l~~l--~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l 311 (389)
T 3acz_A 234 KDAGSLMAPMDAFLCARGMKTL--PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEM 311 (389)
T ss_dssp HHHCCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEE
T ss_pred HhcCCCCCHHHHHHHHcCccHH--HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEE
Confidence 2123346788888777777533 2234555566666666666531 000000 00134577888877
Q ss_pred ecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc--C----------------------------CcceEEecCCcHH
Q 011959 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS--Q----------------------------FEAGFTSLAHSSD 458 (474)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--~----------------------------~~~~~~~~~~t~e 458 (474)
.. ...+.+.+.+.|+++.+. | ...+|++... +
T Consensus 312 ~~----------------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--~ 373 (389)
T 3acz_A 312 KS----------------FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI--E 373 (389)
T ss_dssp SS----------------HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS--S
T ss_pred CC----------------HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc--C
Confidence 32 134455555678766542 1 1245665544 3
Q ss_pred HHHHHHHHHHHHHhhC
Q 011959 459 DIQHTITAAEKVLRQI 474 (474)
Q Consensus 459 ~i~~~l~~l~~~~~~~ 474 (474)
+++++++.|+++++++
T Consensus 374 ~~~~li~~l~~al~~~ 389 (389)
T 3acz_A 374 NVDDIIADLKQALELW 389 (389)
T ss_dssp CHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhhC
Confidence 7888888888887653
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=203.61 Aligned_cols=288 Identities=13% Similarity=0.045 Sum_probs=192.7
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
+.++...+|++++++++ +.+.+++++||++|++.+++.. ...++.||+.+++||+..........
T Consensus 78 ~~~p~~~~l~~~la~~~-g~~~~~~~~sG~~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~~~------------ 142 (414)
T 3ndn_A 78 YGNPTVSVFEERLRLIE-GAPAAFATASGMAAVFTSLGAL--LGAGDRLVAARSLFGSCFVVCSEILP------------ 142 (414)
T ss_dssp TCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHTT--CCTTCEEEEESCCCHHHHHHHHTHHH------------
T ss_pred CCChHHHHHHHHHHHHH-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCccchHHHHHHHHHH------------
Confidence 46788899999999988 4678999999999999999842 34567899999999884432211000
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
..+.++..++.+|+++|++.++. ++++|++|+++|++|.+.+ +++|+++|++||++||+||+|+..
T Consensus 143 ----~~g~~~~~v~~~d~~~l~~ai~~---~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~~~--- 208 (414)
T 3ndn_A 143 ----RWGVQTVFVDGDDLSQWERALSV---PTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFATP--- 208 (414)
T ss_dssp ----HTTCEEEEECTTCHHHHHHHTSS---CCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTHH---
T ss_pred ----HcCcEEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCccc---
Confidence 01124667788899999999873 5789999999999999988 999999999999999999999521
Q ss_pred CCccccccCCCCceeehhhhcCC-C-cceEEEEecHHHHH-hhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 296 YGGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGGRRDIME-MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~t~sK~l~~-G-~~iG~~~~~~~i~~-~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
..+....+|....+.+++|.+++ | +++|+++++++.+. .+.. .........++..+++++..++.+ +...++
T Consensus 209 ~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~---~~~~~g~~~~~~~a~~~~~~l~~l--~~r~~~ 283 (414)
T 3ndn_A 209 LLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQK---LMRHTGPAMSAFNAWVLLKGLETL--AIRVQH 283 (414)
T ss_dssp HHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHH---HHHHHCCCCCHHHHHHHHHHGGGH--HHHHHH
T ss_pred ccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHH---HHHHcCCCCCHHHHHHHHHHHHHH--HHHHHH
Confidence 11111244555555679999996 7 89999999988765 4431 111112234677766666555433 234455
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeeE------------------EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH
Q 011959 373 LNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~------------------v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (474)
..++.+++.+.|++. +.+.. .++.|.++++++..... ...+...+|.+.|
T Consensus 284 ~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~--------~~~~~~~~~~~~l 351 (414)
T 3ndn_A 284 SNASAQRIAEFLNGH----PSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED--------VAKQRAFEVLDKM 351 (414)
T ss_dssp HHHHHHHHHHHHHTC----TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG--------GHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC----CCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc--------ccHHHHHHHHHhC
Confidence 666667777666543 32222 24578999999853100 0023345677777
Q ss_pred HHCCeEecccCC---------------------------cceEEecCCcHHHHHHHHHHHHHHH
Q 011959 435 LEEGVYFAPSQF---------------------------EAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 435 ~~~Gv~v~~~~~---------------------------~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
...++.+..++. +.+|++. ..|+++.+++.|++++
T Consensus 352 ~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsv--G~e~~~dli~dl~~al 413 (414)
T 3ndn_A 352 RLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISV--GLEDTDDLIADIDRAL 413 (414)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEEC--CSSCHHHHHHHHHHHH
T ss_pred ccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEe--CcCCHHHHHHHHHHhh
Confidence 666655544432 1234444 3467788888888776
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=201.37 Aligned_cols=281 Identities=13% Similarity=0.022 Sum_probs=190.5
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchh---HHHhcCCCCccCCCCCC
Q 011959 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDS 214 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~---~~~~~g~~~~~~~~~~~ 214 (474)
.+...+|.+.+++++ +.+++++++||++|+..+++.. ...++.|++.++.|++.... .+...|.
T Consensus 61 ~~~~~~l~~~ia~~~-g~~~~i~~~~g~~ai~~~~~~l--~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~---------- 127 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLE-KTEACVATSSGMGAIAATVLTI--LKAGDHLISDECLYGCTHALFEHALTKFGI---------- 127 (404)
T ss_dssp CHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC----------
T ss_pred ChHHHHHHHHHHHHh-CCCcEEEeCChHHHHHHHHHHH--hCCCCEEEEeCCCchhHHHHHHHHHHHcCC----------
Confidence 455668888888877 4468999999999999999842 34567888888888874432 2222222
Q ss_pred CCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH-hCCEEEEeccccCc-
Q 011959 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGF- 292 (474)
Q Consensus 215 ~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-~g~llI~DEv~~g~- 292 (474)
++..++.+|+++|++.++. ++++|++++++|++|.+.+ +++|.++|++ ||++||+||+|.++
T Consensus 128 ---------~~~~v~~~d~~~l~~~i~~---~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~ 191 (404)
T 1e5e_A 128 ---------QVDFINTAIPGEVKKHMKP---NTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPM 191 (404)
T ss_dssp ---------EEEEECTTSTTHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTT
T ss_pred ---------EEEEECCCCHHHHHHhcCC---CCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhh
Confidence 3566677789999998863 6899999999999999997 9999999999 99999999999866
Q ss_pred ccCCCccccccCCCCceeehhhhcC-CCcce-EEEEecHHHHH-hhcCCCCccccc-CCCCChHHHHHHHHHHHHhcCCC
Q 011959 293 RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPV-GAYGGRRDIME-MVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPG 368 (474)
Q Consensus 293 r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~i-G~~~~~~~i~~-~~~~~~~~~~~~-t~~~~~~~~aaa~aal~~~~~~~ 368 (474)
.. ... .++...-+.++||.++ +|+|+ |++++++++++ .+.+. .... +.+.+++.+.++.++|+.+ +.
T Consensus 192 ~~-~~~---~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~---~~~~~g~~~~~~~~~~~~~~l~~~--~~ 262 (404)
T 1e5e_A 192 IT-NPV---DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVG---IKDITGSVISPHDAWLITRGLSTL--NI 262 (404)
T ss_dssp TC-CGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTC---CCCCCCCCCCHHHHHHHHHHHTTH--HH
T ss_pred hC-Ccc---ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHH---HHhCCCCCCCHHHHHHHHHhHhHH--HH
Confidence 32 111 2343333347999999 58998 99999999888 77642 2222 3467888988888888633 22
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hhcCCe----------eEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH
Q 011959 369 TYEYLNKITGELTQGIIDAG----KKAGHA----------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (474)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~----~~~~~~----------~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (474)
..++..++.+.+.+.|++.. ..++.. ...++.|.|+.|++.+. ...+.+.+
T Consensus 263 ~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~---------------~~~~~~~l 327 (404)
T 1e5e_A 263 RMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG---------------FEGAKKLL 327 (404)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH---------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC---------------HHHHHHHH
Confidence 34445556666655555431 000100 00134588888876320 12344555
Q ss_pred HHCCeEeccc--C----------------------------CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 435 LEEGVYFAPS--Q----------------------------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 435 ~~~Gv~v~~~--~----------------------------~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+.||++... + ...+|+++.. |+++++++.|+++++.
T Consensus 328 ~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 328 DNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--EDADELIADFKQGLDA 394 (404)
T ss_dssp HTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred HhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHHHH
Confidence 6778754331 1 2457888776 8899999999988764
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=202.97 Aligned_cols=322 Identities=11% Similarity=0.065 Sum_probs=189.9
Q ss_pred CHHHHHHHHHHHHhcCCCC-----CCCHHHHHHHHHHHhhCCCCC--eEEEeCCHHHHHHHHHHHh-Hhhc-CCcEEEEE
Q 011959 117 DDQVLAALGETMKKGTSFG-----APCLLENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLA-RAFT-GRERIIKF 187 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~-----~~~~~~~~la~~l~~~~~~~~--~v~~~~sGseA~~~al~~a-r~~~-~~~~ii~~ 187 (474)
-|.|++|.+..++...... +..++++.+++.+.......+ ...-+.+|+.|+..++.+. +.+. +++.|++.
T Consensus 64 l~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip 143 (420)
T 4h51_A 64 LRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLS 143 (420)
T ss_dssp CHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEE
T ss_pred CHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 3788888877776643322 234555666655532221122 3455889999998888754 3443 46789999
Q ss_pred eCCCCCCchhHHHhcCCC-CccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCH
Q 011959 188 EGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 188 ~~~yhg~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
+|+|..+. ..+...|.. +....+.... ... .|.+.+.+.++..+++..+++..+.+|++|.....+
T Consensus 144 ~P~w~~y~-~i~~~aG~~~V~~~~~~~~~---------~~~---~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~ 210 (420)
T 4h51_A 144 DPTWPNHY-GVVKAAGWKNICTYAYYDPK---------TVS---LNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQE 210 (420)
T ss_dssp ESCCTHHH-HHHHHTTCCCEEEEECEEGG---------GTE---ECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHH
T ss_pred cCCchhHH-HHHHHcCCeEEEeecccccc---------ccC---CCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHH
Confidence 99996643 334444432 2111000000 000 167888887776556777888888888899877655
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-ccCC---Ccccc-ccCCCCce---eehhhhcC-CCcceEEEEecHHHHHhhcC
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQE-YFGVTPDL---TTLGKIIG-GGLPVGAYGGRRDIMEMVAP 337 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~~~~-~~g~~pdi---~t~sK~l~-~G~~iG~~~~~~~i~~~~~~ 337 (474)
+ +++|.++|+++++++|+||+|.|| ..+. .+... ..+..+.+ -+|||.++ .|||+||+++..+..+....
T Consensus 211 ~-~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~ 289 (420)
T 4h51_A 211 Q-WNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRAD 289 (420)
T ss_dssp H-HHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHH
T ss_pred H-HHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHH
Confidence 5 999999999999999999999998 4321 11111 11122233 37999999 79999999775443322210
Q ss_pred C----CCcccccCCCCChHHHHHHHHHHHHh------c-C-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEE
Q 011959 338 A----GPMYQAGTLSGNPLAMTAGIHTLKRL------K-E-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 405 (474)
Q Consensus 338 ~----~~~~~~~t~~~~~~~~aaa~aal~~~------~-~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~ 405 (474)
. .........+.+..++.++...|..- + + +.++++++++++.+.+.|+++.....+....+..|+|.+
T Consensus 290 ~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~ 369 (420)
T 4h51_A 290 VKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSF 369 (420)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEE
T ss_pred HHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEe
Confidence 0 01111222233445555555544310 1 1 344555666666666666654321111111234555543
Q ss_pred EEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecC-CcHHHHHHHHHHHHHHHhhC
Q 011959 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~-~t~e~i~~~l~~l~~~~~~~ 474 (474)
+-+. .+.++.|.++||++.+++ |++++ .+++.|+.++++|.++++++
T Consensus 370 ~gls------------------~e~v~~L~e~~Vy~~~~g----Ris~Agl~~~ni~~~a~aI~~vvr~i 417 (420)
T 4h51_A 370 LGLS------------------KAQCEYCQNHNIFITVSG----RANMAGLTHETALMLAQTINDAVRNV 417 (420)
T ss_dssp CCCC------------------HHHHHHHHHTTEECCTTC----EEEGGGCCHHHHHHHHHHHHHHHC--
T ss_pred cCcC------------------HHHHHHHHhCCEEEcCCC----EEEeccCCHHHHHHHHHHHHHHHHHh
Confidence 2221 233567789999998875 88765 69999999999999998764
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-21 Score=194.08 Aligned_cols=311 Identities=14% Similarity=0.081 Sum_probs=197.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCch
Q 011959 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (474)
.|++++++.++++++....++.....++.+.++++++ .+..++++||++|++.+++..+ ..++++|++.+++||+...
T Consensus 16 ~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~-~~~~i~~~sGt~al~~~l~~l~-~~~gd~Vi~~~~~~~~~~~ 93 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHG-AAHALAVTNGTHALELALQVMG-VGPGTEVIVPAFTFISSSQ 93 (388)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTT-CSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTHHHH
T ss_pred CHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhC-CCeEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCccHHHHH
Confidence 4899999999998753222345667888999998884 4466677778999999999532 3456789999999988654
Q ss_pred hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHH
Q 011959 197 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 197 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
. +...|..+..++.....+. -|+++|++.++. ++++|+ | ++++|.+.+ +++|.++|
T Consensus 94 ~-~~~~g~~~~~v~~~~~~~~-------------~d~~~l~~~i~~---~~~~v~--~-~n~tG~~~~----l~~i~~la 149 (388)
T 1b9h_A 94 A-AQRLGAVTVPVDVDAATYN-------------LDPEAVAAAVTP---RTKVIM--P-VHMAGLMAD----MDALAKIS 149 (388)
T ss_dssp H-HHHTTCEEEEECBCTTTCC-------------BCHHHHHHHCCT---TEEEEC--C-BCGGGCCCC----HHHHHHHH
T ss_pred H-HHHcCCEEEEEecCCCcCC-------------CCHHHHHHhcCc---CceEEE--E-eCCccCcCC----HHHHHHHH
Confidence 3 3334443322111100000 189999998863 567666 4 455788877 99999999
Q ss_pred HHhCCEEEEecccc-Cc-ccCCCccccccCCCCceeehh--hhcCCCcceEEEEecHH-H--HHhhcCCCC--------c
Q 011959 277 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRD-I--MEMVAPAGP--------M 341 (474)
Q Consensus 277 ~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~t~s--K~l~~G~~iG~~~~~~~-i--~~~~~~~~~--------~ 341 (474)
++||++||+||+|+ |+ ..+.. ...++ ..++.+|| |.+++ .++|+++++++ + ++.+..... .
T Consensus 150 ~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (388)
T 1b9h_A 150 ADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTA-GEGGAVVFPDGETEKYETAFLRHSCGRPRDDRR 225 (388)
T ss_dssp HHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCS-SSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSS
T ss_pred HHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccC-CCeEEEEECCHHHHHHHHHHHHHhCCCCccCcc
Confidence 99999999999996 44 33221 12223 23455677 66654 58999998875 6 555421000 0
Q ss_pred c----cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE------eeeceeEEEEEecC
Q 011959 342 Y----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG------GYISGMFGFFFTEG 411 (474)
Q Consensus 342 ~----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v------~~~g~~~~i~~~~~ 411 (474)
+ .+.++..+++.++++.+.++.+ ++..++.+++.+++.+.|+++ . ++.... +..+.++++.+...
T Consensus 226 ~~~~~~g~~~~~~~~~~a~~~~~~~~l--~~~~~~~~~~~~~l~~~L~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (388)
T 1b9h_A 226 YFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAI-D--GVVPQGGDVRADRNSHYMAMFRIPGL 300 (388)
T ss_dssp CCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTS-T--TCEECCCCTTCCBCCCSEEEEECTTC
T ss_pred ceeecccccCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC-C--CccccCCCcCCCccceEEEEEEeCCc
Confidence 0 0122335666666655555443 335666777777777777653 1 221111 22356777766321
Q ss_pred CCcCcccccccchHHHHHHHHHHHHCCeEecccCCc---------------------------------ceEEe--cCC-
Q 011959 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE---------------------------------AGFTS--LAH- 455 (474)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------------------------~~~~~--~~~- 455 (474)
......++.+.|.++||.+.++..+ .++++ ..+
T Consensus 301 -----------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 369 (388)
T 1b9h_A 301 -----------TEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLA 369 (388)
T ss_dssp -----------CHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGS
T ss_pred -----------CcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCC
Confidence 0123467889999999998754221 14554 356
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011959 456 SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~ 473 (474)
|++||+++++.|++++++
T Consensus 370 t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 370 GEPELHATAEIIADAVAR 387 (388)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 899999999999998875
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=203.99 Aligned_cols=308 Identities=12% Similarity=0.052 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCC----------CCHHHHH-HHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEE
Q 011959 116 ADDQVLAALGETMKKGTSFGA----------PCLLENV-LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 184 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~----------~~~~~~~-la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~i 184 (474)
.||+|++|+.+++.+....++ ..+...+ ..+++++.++.....++++||++|++.+++.. ..+++.|
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~--~~~gd~v 119 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTAL--LQPGDTV 119 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH--CCTTCEE
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHh--cCCCCEE
Confidence 699999999998854221111 1123333 33677777752223344678999999999842 3455677
Q ss_pred EEEeCCCCCCchhHH--HhcCCCCccCCCCCCCCCCCCCCCceEEcc-----CCCHHHHHHHHhcCCCCeEEEEEccccC
Q 011959 185 IKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAP-----FNDVSALENLFENNKGEIAAIILEPVVG 257 (474)
Q Consensus 185 i~~~~~yhg~~~~~~--~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (474)
++.++.|++...... ...|..+. .+.++ ..|+++|++.++++ ++++|++++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~g~~~~-----------------~~~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~~ 180 (420)
T 3gbx_A 120 LGMNLAQGGHLTHGSPVNFSGKLYN-----------------IVPYGIDESGKIDYDEMAKLAKEH--KPKMIIGGFSAY 180 (420)
T ss_dssp EEEEEC------------CHHHHSE-----------------EEEEEECTTCSCCHHHHHHHHHHH--CCSEEEECCTTC
T ss_pred Eecchhhcceeccchhhhhccccee-----------------EEeccCCccCCcCHHHHHHHHHhc--CCeEEEEecCcc
Confidence 777666655221111 11111110 11111 13899999999853 467778754322
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCceee--hhhhcCCCcceEEEEecH---H
Q 011959 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRR---D 330 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~---~ 330 (474)
|...+ +++|+++|++||++||+||+| .|+ +.+..... .. .+|+++ +||+++ |.+.|++++++ +
T Consensus 181 --~~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~-~~di~~~s~sK~~~-g~~gg~~~~~~~~~~ 250 (420)
T 3gbx_A 181 --SGVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP-HAHVVTTTTHKTLA-GPRGGLILAKGGDEE 250 (420)
T ss_dssp --CSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT-TSSEEEEESSGGGC-SCSCEEEEESSCCHH
T ss_pred --CCccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc-cCCEEEeecccCCC-CCCceEEEEcCCcHH
Confidence 33555 999999999999999999998 565 54432211 11 278775 789997 55679999887 7
Q ss_pred HHHhhcCCCCcccccCCCCC-hHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-eeceeEE
Q 011959 331 IMEMVAPAGPMYQAGTLSGN-PLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFG 405 (474)
Q Consensus 331 i~~~~~~~~~~~~~~t~~~~-~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~ 405 (474)
+++.+.. ....++++.+ ...++++..++....+ +++.+++.++.+++++.|.+. ++..... ..+.+++
T Consensus 251 ~~~~~~~---~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~ 323 (420)
T 3gbx_A 251 LYKKLNS---AVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR----GYKVVSGGTENHLFL 323 (420)
T ss_dssp HHHHHHH---HHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEE
T ss_pred HHHHhhh---hcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc----CCeeccCCCCCeEEE
Confidence 7777652 2222223333 3333343445544322 455777788888888888763 2211111 3466777
Q ss_pred EEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc----------CCcceEEec------CCcHHHHHHHHHHHHH
Q 011959 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----------QFEAGFTSL------AHSSDDIQHTITAAEK 469 (474)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------~~~~~~~~~------~~t~e~i~~~l~~l~~ 469 (474)
+.+.... .....+.+.|.++||++.+. +...+|++. ..+++++++++++|++
T Consensus 324 ~~~~~~~------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~ 391 (420)
T 3gbx_A 324 LDLVDKN------------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCD 391 (420)
T ss_dssp EECGGGT------------CCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred EEcCCCC------------CCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHH
Confidence 7664211 01246677888899999872 122367743 2568999999999999
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
++++
T Consensus 392 ~l~~ 395 (420)
T 3gbx_A 392 VLDN 395 (420)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8764
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.4e-23 Score=202.22 Aligned_cols=300 Identities=12% Similarity=0.085 Sum_probs=191.4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHH
Q 011959 120 VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199 (474)
Q Consensus 120 v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~ 199 (474)
+.+++.+.+..+. .++.....++.+.+++++ +.+++++++||++|++.+++.++ ..++++|++.+++|++.... +
T Consensus 21 ~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~a~~~~~~~~~-~~~gd~v~~~~~~~~~~~~~-~ 95 (374)
T 3uwc_A 21 YLNDLREFIKTAD--FTLGAELEKFEKRFAALH-NAPHAIGVGTGTDALAMSFKMLN-IGAGDEVITCANTFIASVGA-I 95 (374)
T ss_dssp HHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHT-TCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHHHHHH-H
T ss_pred HHHHHHHHHHcCC--cccChhHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHcC-CCCCCEEEECCCccHHHHHH-H
Confidence 7778777776642 246777889999999998 45589999999999999999532 44567899999988885443 3
Q ss_pred HhcCCCCccCCCCCCCCCCCCCCCceEEccCC-----CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHH
Q 011959 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (474)
Q Consensus 200 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (474)
...|..+ ..++.+ |+++|++.+++ ++++|+ +++++|.+.+ +++|.+
T Consensus 96 ~~~g~~~-------------------~~~~~~~~~~~d~~~l~~~~~~---~~~~v~---~~n~~G~~~~----~~~i~~ 146 (374)
T 3uwc_A 96 VQAGATP-------------------VLVDSENGYVIDPEKIEAAITD---KTKAIM---PVHYTGNIAD----MPALAK 146 (374)
T ss_dssp HHTTCEE-------------------EEECBCTTSSBCGGGTGGGCCT---TEEEEC---CBCGGGCCCC----HHHHHH
T ss_pred HHcCCEE-------------------EEEecCCCCCcCHHHHHHhCCC---CceEEE---EeCCcCCcCC----HHHHHH
Confidence 3334322 222222 78888887763 567766 4456788877 999999
Q ss_pred HHHHhCCEEEEeccccCcccCCCccccccCCCCceeehh----hhcCC-CcceEEEEec-HHHHHhhcCCCC------c-
Q 011959 275 ITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGGR-RDIMEMVAPAGP------M- 341 (474)
Q Consensus 275 l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~s----K~l~~-G~~iG~~~~~-~~i~~~~~~~~~------~- 341 (474)
+|++||++||+||+|+.+ ..+.....+..+|++++| |.+++ |. .|+++++ +++++.+..... .
T Consensus 147 ~~~~~~~~li~D~~~~~g---~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
T 3uwc_A 147 IAKKHNLHIVEDACQTIL---GRINDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDV 222 (374)
T ss_dssp HHHHTTCEEEEECTTCTT---CEETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTE
T ss_pred HHHHcCCEEEEeCCCccC---ceeCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCccccCc
Confidence 999999999999999733 112223445556888666 99987 66 8888765 466555542111 0
Q ss_pred --ccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-eeceeEEEEEecCCCcCccc
Q 011959 342 --YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFED 418 (474)
Q Consensus 342 --~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~ 418 (474)
..+.++..+++.++++...++.+ +++.++.+++.+++++.|.++.....++.... ....++.+.+...
T Consensus 223 ~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 293 (374)
T 3uwc_A 223 CVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVK------- 293 (374)
T ss_dssp ESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEET-------
T ss_pred cccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcC-------
Confidence 01123344666666555544333 34666666777777776665421011110000 1111111111110
Q ss_pred ccccchHHHHHHHHHHHHCCeEecccCC---------------------------cceEEe--cCCcHHHHHHHHHHHHH
Q 011959 419 AKKSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS--LAHSSDDIQHTITAAEK 469 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------------~~~~~~--~~~t~e~i~~~l~~l~~ 469 (474)
....+.+.|.++||.+.++.. ..++++ ..+|++||++++++|++
T Consensus 294 -------~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~ 366 (374)
T 3uwc_A 294 -------YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVRE 366 (374)
T ss_dssp -------THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 135788899999999887641 234553 45799999999999999
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
++++
T Consensus 367 ~l~~ 370 (374)
T 3uwc_A 367 FYLE 370 (374)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9865
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=199.65 Aligned_cols=316 Identities=16% Similarity=0.135 Sum_probs=189.0
Q ss_pred CCHHHHHHHHHHHHhcCCCC--------CCCH--HHHHHH-HHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcE
Q 011959 116 ADDQVLAALGETMKKGTSFG--------APCL--LENVLA-EMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRER 183 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~--------~~~~--~~~~la-~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ 183 (474)
.+|+|++|+.+++.+....+ .... ..++++ +++++.+ +.+.+.+ ++||++|++.+++.+ ...+++
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~-g~~~~~v~~~sGs~a~~~a~~~~--~~~Gd~ 133 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALF-GAEFANVQPHSGAQANAAVLHAL--MSPGER 133 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-TCSEEECCCSSHHHHHHHHHHHH--CCTTCE
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHc-CCCceEEEeCCHHHHHHHHHHHh--cCCCCE
Confidence 48999999999886421111 1111 225566 8888887 4556666 999999999999953 345678
Q ss_pred EEEEeCCCCCCchhH--HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE-ccccCCCC
Q 011959 184 IIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL-EPVVGNSG 260 (474)
Q Consensus 184 ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~-ep~~~~~G 260 (474)
|++.+++|+++.... +...|.......++.... . -..|+++|++.+++. ++++|++ .|++++++
T Consensus 134 Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~---~~~d~~~l~~~i~~~--~~~~i~~~~~~~~~~~ 200 (447)
T 3h7f_A 134 LLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPA--------T---HLIDMDAVRATALEF--RPKVIIAGWSAYPRVL 200 (447)
T ss_dssp EEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTT--------T---CSCCHHHHHHHHHHH--CCSEEEEECSSCCSCC
T ss_pred EEecCcccccccchhhhhhhcCCeeEEEEcCcCcc--------c---CCcCHHHHHHHHHhc--CCeEEEEcCCCCCCcc
Confidence 888888887732211 111111111100110000 0 013899999998643 3456666 45554332
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhc
Q 011959 261 FIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVA 336 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~ 336 (474)
+ +++|+++|++||++||+||+| .|+ +.+..... +. ..|++ ++||+++ |+|.|++++++++++.+.
T Consensus 201 ---~----l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~--~~-~~di~~~s~sK~l~-G~~gG~i~~~~~~~~~l~ 269 (447)
T 3h7f_A 201 ---D----FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP--VP-HADVVSTTVHKTLG-GGRSGLIVGKQQYAKAIN 269 (447)
T ss_dssp ---C----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS--TT-TCSEEEEESSGGGC-CCSCEEEEECGGGHHHHH
T ss_pred ---C----HHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC--CC-CCcEEEecCCcCCC-CCCeEEEEECHHHHHHHh
Confidence 3 999999999999999999997 666 54432111 11 23555 7899995 789999999999888775
Q ss_pred CCCCcccccCCCC-ChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhc-CCeeEE-eeeceeEEEEEec
Q 011959 337 PAGPMYQAGTLSG-NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA-GHAICG-GYISGMFGFFFTE 410 (474)
Q Consensus 337 ~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~v-~~~g~~~~i~~~~ 410 (474)
. ....+++++ +...++++.+++..+.+ +++.+++.++.+++.+.|.+..... ++.... ...+.++++.+..
T Consensus 270 ~---~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 346 (447)
T 3h7f_A 270 S---AVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRD 346 (447)
T ss_dssp H---HHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTT
T ss_pred h---hcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCC
Confidence 3 112223333 33335555566665443 3467777888888888876641111 221100 1234555665532
Q ss_pred CCCcCcccccccchHHHHHHHHHHHHCCeEec----cc------CCcceEEec------CCcHHHHHHHHHHHHHHHhh
Q 011959 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PS------QFEAGFTSL------AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~------~~~~~~~~~------~~t~e~i~~~l~~l~~~~~~ 473 (474)
... ....+.+.|.++||++. +. ....+|+.. .++++++++++++|++++++
T Consensus 347 ~~~------------~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 347 SPL------------DGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp SSC------------CHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred CCC------------CHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 110 11345566667799988 33 112356632 27899999999999998853
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=195.17 Aligned_cols=286 Identities=15% Similarity=0.072 Sum_probs=191.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
++.+...+++++++++++ .+.+++++||++|+..+++.. ..++++|++.++.||+.......... .
T Consensus 62 ~~~~~~~~l~~~la~~~g-~~~~i~~~sG~~a~~~~l~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~----------~- 127 (398)
T 1gc0_A 62 ISNPTLNLLEARMASLEG-GEAGLALASGMGAITSTLWTL--LRPGDEVLLGNTLYGCTFAFLHHGIG----------E- 127 (398)
T ss_dssp -CCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSCCSHHHHHHHHTGG----------G-
T ss_pred CCChHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hcCCCEEEEeCCCchhHHHHHHHHHH----------H-
Confidence 356778888888888884 458888999999999999953 34567899999999885543321100 0
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
.+.++..++.+|++++++.+++ ++++|++++++|++|.+.+ +++|+++|++||++||+||+|+.+..+
T Consensus 128 -----~g~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~ 195 (398)
T 1gc0_A 128 -----FGVKLRHVDMADLQALEAAMTP---ATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTPYLQ 195 (398)
T ss_dssp -----GTCEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHHHHC
T ss_pred -----cCCEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 0113555666799999998863 6899999999999999998 999999999999999999999744211
Q ss_pred CCccccccCCCCceeehhhhcCC-Ccce-EEEEecHHHHH-hhcCCCCcccc-cCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 296 YGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIME-MVAPAGPMYQA-GTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~t~sK~l~~-G~~i-G~~~~~~~i~~-~~~~~~~~~~~-~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
.. ..++....+.+++|.+++ |+|+ |++++++++++ .+. ..... .+.+.+++.++++.++++.+ +...+
T Consensus 196 ~~---~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 267 (398)
T 1gc0_A 196 RP---LELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRL---QGLKDMTGAVLSPHDAALLMRGIKTL--NLRMD 267 (398)
T ss_dssp CG---GGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHH---THHHHHTCCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred Cc---hhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHH---HHhhccCCCCCCHHHHHHHHhccchH--HHHHH
Confidence 11 123444445589999994 7887 88899988765 454 22222 34567899888888887643 34556
Q ss_pred HHHHHHHHHHHHHHHHhh----hcC---------Cee-EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC
Q 011959 372 YLNKITGELTQGIIDAGK----KAG---------HAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~----~~~---------~~~-~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (474)
+..++.+.+.+.|++... .++ +.. ..++.|.++.+++... .....+.+.+.
T Consensus 268 ~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---------------~~~~~~~l~~~ 332 (398)
T 1gc0_A 268 RHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG---------------IGAGRRFMNAL 332 (398)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTH---------------HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC---------------HHHHHHHHHhC
Confidence 666777777777765210 000 000 0124677878776321 12344556667
Q ss_pred CeEecc---cC---------------------------CcceEEe--cCCcHHHHHHHHHHHHHH
Q 011959 438 GVYFAP---SQ---------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 438 Gv~v~~---~~---------------------------~~~~~~~--~~~t~e~i~~~l~~l~~~ 470 (474)
|+.... ++ ...+|++ ...++++|+.+.++|+++
T Consensus 333 ~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 333 QLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 766533 10 1345665 556788888888888764
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-21 Score=193.62 Aligned_cols=317 Identities=12% Similarity=0.035 Sum_probs=197.4
Q ss_pred eccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCc
Q 011959 103 DYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 182 (474)
Q Consensus 103 D~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~ 182 (474)
||..+. ..++ .++++.+++.+.++.+. |+.......+|.+.+++++ +.+++++++||++|++.+++.. ..++
T Consensus 20 ~l~~~~--p~~~-~p~~~~~a~~~~~~~~~-y~~~~~~~~~l~~~la~~~-~~~~v~~~~ggt~al~~~l~~l---~~gd 91 (424)
T 2po3_A 20 PLLVGR--PNRI-DRARLYERLDRALDSQW-LSNGGPLVREFEERVAGLA-GVRHAVATCNATAGLQLLAHAA---GLTG 91 (424)
T ss_dssp CEETTC--CCCC-CHHHHHHHHHHHHHHTC-CSSSCHHHHHHHHHHHHHH-TSSEEEEESCHHHHHHHHHHHH---TCCS
T ss_pred cccccC--CCCC-ChHHHHHHHHHHHhcCC-cccCCHHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHc---CCCC
Confidence 344443 3444 36899999999887642 3221466778888888887 5679999999999999999954 2458
Q ss_pred EEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcc
Q 011959 183 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 262 (474)
Q Consensus 183 ~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i 262 (474)
+|++.+++|++... .+...|..+..++.....+. -|+++|++.++. ++++|++.+ ++|..
T Consensus 92 ~Vlv~~~~~~~~~~-~~~~~G~~~~~v~~~~~~~~-------------~d~~~l~~~i~~---~~~~v~~~~---~tG~~ 151 (424)
T 2po3_A 92 EVIMPSMTFAATPH-ALRWIGLTPVFADIDPDTGN-------------LDPDQVAAAVTP---RTSAVVGVH---LWGRP 151 (424)
T ss_dssp EEEEESSSCTHHHH-HHHHTTCEEEEECBCTTTSS-------------BCHHHHGGGCCT---TEEEEEEEC---GGGCC
T ss_pred EEEECCCccHHHHH-HHHHcCCEEEEEecCCCcCC-------------cCHHHHHHhhCc---CCcEEEEEC---CCCCc
Confidence 89999999988654 34444443322111100000 178998887763 577777643 46666
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEecccc-Cc-ccCCCccccccCCCCcee--ehh--hhcCCCcceEEEEec-HHHHHhh
Q 011959 263 APKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLG--KIIGGGLPVGAYGGR-RDIMEMV 335 (474)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~--t~s--K~l~~G~~iG~~~~~-~~i~~~~ 335 (474)
.+ +++|.++|++||++||+||+|+ |+ ..+.. ++..+|++ +|| |.+++ +++|+++++ +++++.+
T Consensus 152 ~~----l~~i~~la~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l 221 (424)
T 2po3_A 152 CA----ADQLRKVADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA-FEGGAVVTDDADLAARI 221 (424)
T ss_dssp CC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHH
T ss_pred CC----HHHHHHHHHHcCCEEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHH
Confidence 55 9999999999999999999997 77 54321 22225665 565 77765 799999998 7887766
Q ss_pred cCCCCc-----c----cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-eec----
Q 011959 336 APAGPM-----Y----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YIS---- 401 (474)
Q Consensus 336 ~~~~~~-----~----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g---- 401 (474)
...... + .+.++..+++.+++++..++.++ .+.++.+++.+++++.|. +.+...... ..|
T Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~--~~~~~~~~~~~~l~~~L~----~~~g~~~~~~~~~~~~~ 295 (424)
T 2po3_A 222 RALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFP--EVIDRNRRNHAAYREHLA----DLPGVLVADHDRHGLNN 295 (424)
T ss_dssp HHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTC----SCTTEEECCGGGGSCCC
T ss_pred HHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhc----cCCCccccCCCCCCccc
Confidence 421000 0 11122345667666665554332 344555555555555443 332111111 111
Q ss_pred -eeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-c-----------------c-------eEEe--c
Q 011959 402 -GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-E-----------------A-------GFTS--L 453 (474)
Q Consensus 402 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~-----------------~-------~~~~--~ 453 (474)
.++.+.+.... ......++.+.|.++||.+.+... + . ++++ .
T Consensus 296 ~~~~~i~~~~~~----------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~ 365 (424)
T 2po3_A 296 HQYVIVEIDEAT----------TGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGT 365 (424)
T ss_dssp CCCEEEEECHHH----------HSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCST
T ss_pred cEEEEEEECCcc----------chhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCC
Confidence 33444442100 000125678888999999876321 1 0 5565 6
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q 011959 454 AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+|++|+++++++|++++++
T Consensus 366 ~~t~e~i~~~~~~L~~~~~~ 385 (424)
T 2po3_A 366 AIGDDDIRRVADLLRLCATR 385 (424)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 77999999999999988753
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-21 Score=194.91 Aligned_cols=301 Identities=13% Similarity=0.053 Sum_probs=194.5
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeC
Q 011959 111 AIIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 189 (474)
Q Consensus 111 ~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (474)
..+++.+|+.++++.+ ...+..|+ ...+...++++++++++ +.+++++++||++|++.+++.+ ..++++|++.++
T Consensus 28 ~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~-g~~~~~~~~~gt~a~~~al~~l--~~~gd~vi~~~~ 103 (412)
T 2cb1_A 28 AAYGFKTLEEGQERFA-TGEGYVYARQKDPTAKALEERLKALE-GALEAVVLASGQAATFAALLAL--LRPGDEVVAAKG 103 (412)
T ss_dssp SBCCCSSHHHHHHHHH-HCCSCSBTTTCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHTT--CCTTCEEEEETT
T ss_pred ceeecCChHHHHHHhc-cccCcCcCCCCChHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCC
Confidence 4567777766555544 12222233 24577889999999888 4568999999999999999953 345678999888
Q ss_pred CCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHH
Q 011959 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 269 (474)
Q Consensus 190 ~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (474)
.|++.......... ..+.++..++. |+++|++.++. ++++|++++++|++|.+.+ +
T Consensus 104 ~~~~~~~~~~~~~~----------------~~g~~~~~~~~-~~~~l~~~i~~---~~~~v~~~~~~n~~G~~~~----l 159 (412)
T 2cb1_A 104 LFGQTIGLFGQVLS----------------LMGVTVRYVDP-EPEAVREALSA---KTRAVFVETVANPALLVPD----L 159 (412)
T ss_dssp CCHHHHHHHHHTTT----------------TTTCEEEEECS-SHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----H
T ss_pred CchhHHHHHHHHHH----------------HcCCEEEEECC-CHHHHHHHhcc---CCeEEEEeCCCCCCccccc----H
Confidence 88764333221000 01123455555 48999988863 6899999999999999998 9
Q ss_pred HHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcC-CCcceEEEEecH----------------
Q 011959 270 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPVGAYGGRR---------------- 329 (474)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~-~G~~iG~~~~~~---------------- 329 (474)
++|+++|++||+++|+||+|+++ ... ...+..+|++ +++|.++ +|.|+|+++..+
T Consensus 160 ~~i~~l~~~~~~~li~D~~~~~~~~~~-----~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 234 (412)
T 2cb1_A 160 EALATLAEEAGVALVVDNTFGAAGALC-----RPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDL 234 (412)
T ss_dssp HHHHHHHHHHTCEEEEECGGGTTTTSC-----CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC--
T ss_pred HHHHHHHHHcCCEEEEECCCccccccC-----CccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccc
Confidence 99999999999999999999754 211 1122346776 5999998 478999986543
Q ss_pred ------------HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 330 ------------DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 330 ------------~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
++.+.++.. .........+|..++.+...++.+ +...++..++.+++.+.|.+. +.+..+
T Consensus 235 ~g~~~~~~~~~~~~~~~~r~~--~~~~~g~~~~~~~a~~~~~~l~~l--~~~~~~~~~~~~~l~~~L~~~----~~v~~v 306 (412)
T 2cb1_A 235 KGQIPWEALRARCFPERVRTL--GLSLCGMALSPFNAYLLFQGLETV--ALRVARMSETARFLAERLQGH----PKVKAL 306 (412)
T ss_dssp -----HHHHGGGHHHHHHHHH--HTTTTCCCCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHHHTC----TTCSEE
T ss_pred cccchhhccchHHHHHHHHHH--HHHhcCCCCChHHhHHHHcCCchH--HHHHHHHHHHHHHHHHHHHcC----CCeeEE
Confidence 333333310 001112245777777776666544 234455566777777777643 212112
Q ss_pred ------------------eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--------------
Q 011959 398 ------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------------- 445 (474)
Q Consensus 398 ------------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------------- 445 (474)
++.|.++.+.+ .+ .+.+.+.|.+.||++ .+.
T Consensus 307 ~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~---------------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~ 369 (412)
T 2cb1_A 307 RYPGLPEDPAHRNARKYLASGGPILTLDL-GD---------------LERASRFLGAIRLLK-AANLGDARTLLVHPWTT 369 (412)
T ss_dssp ECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS---------------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTT
T ss_pred ECCCCCCCccHHHHHHhCCCCceEEEEEe-CC---------------HHHHHHHHHhCCeee-ecccCCCcceeecCccc
Confidence 24677888877 32 134556666789887 431
Q ss_pred ----------------CcceEEe--cCCcHHHHHHHHHHHHH
Q 011959 446 ----------------FEAGFTS--LAHSSDDIQHTITAAEK 469 (474)
Q Consensus 446 ----------------~~~~~~~--~~~t~e~i~~~l~~l~~ 469 (474)
...+|++ ...++++|+.++++|++
T Consensus 370 ~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 370 THSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 1234554 55678888888877754
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-22 Score=206.79 Aligned_cols=319 Identities=13% Similarity=0.087 Sum_probs=204.4
Q ss_pred CCHHHHHHHHHHHHhcCC---CCC-----CCHHHHHHHHHHHhhCC-C--CCeEEEeCCHHHHHHHHHHHhHhhc----C
Q 011959 116 ADDQVLAALGETMKKGTS---FGA-----PCLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFT----G 180 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~---~~~-----~~~~~~~la~~l~~~~~-~--~~~v~~~~sGseA~~~al~~ar~~~----~ 180 (474)
+++.+.+++.+++..... +.+ ..+++.+++++++++++ . .+.+++++||++|+..+++.++... +
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g 155 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRG 155 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 568999999998877321 111 13567788999999886 2 4689999999999999999876532 2
Q ss_pred --CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCC
Q 011959 181 --RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (474)
Q Consensus 181 --~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (474)
++.|++..++ |......+...|..+..++.....+. -|+++|++.+++ ++++|+++.++++
T Consensus 156 ~~~~~Vi~~~~~-h~~~~~~~~~~G~~~~~v~~~~~~~~-------------~d~~~l~~~i~~---~~~~v~~~~p~np 218 (497)
T 3mc6_A 156 ITEPEIIAPVTA-HAGFDKAAYYFGMKLRHVELDPTTYQ-------------VDLGKVKKFINK---NTVLLVGSAPNFP 218 (497)
T ss_dssp CSSCEEEEETTS-CHHHHHHHHHSCCEEEEECBCTTTCS-------------BCTTTTGGGCCS---SEEEEEEETTCTT
T ss_pred CCCceEEEeCCc-cHHHHHHHHHcCCeEEEEecCcccCc-------------CCHHHHHHHHhh---CCEEEEEECCCCC
Confidence 3556665544 55455555555654333222110010 167888888863 5889999999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc-----CC----CccccccCCCCcee--ehhhhcCCCcceEEEE
Q 011959 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-----AY----GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYG 326 (474)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~-----g~----~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~ 326 (474)
+|.+.+ +++|+++|++||++||+||+|+|+ +. +. .+.....|+ |++ +++|.+.+|.++|+++
T Consensus 219 tG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~~~~g~~~ 292 (497)
T 3mc6_A 219 HGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAPKGSSVIM 292 (497)
T ss_dssp TCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCCSSCEEEE
T ss_pred CCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCCCCceeEE
Confidence 999988 888999999999999999999876 43 11 122233444 554 5779888888999999
Q ss_pred ecHHHHHhhcCC-CCcccccC-----CCC--ChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCee
Q 011959 327 GRRDIMEMVAPA-GPMYQAGT-----LSG--NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (474)
Q Consensus 327 ~~~~i~~~~~~~-~~~~~~~t-----~~~--~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (474)
++++.+...... ...+..++ +.+ +....++..++++.+.+ .++.++..++.+++++.|++... ++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~--g~~~ 370 (497)
T 3mc6_A 293 YRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIP--DLDI 370 (497)
T ss_dssp CSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT--TCEE
T ss_pred ecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CEEE
Confidence 887766544211 01111111 111 11223344455554433 45566777778888888776311 2221
Q ss_pred EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc-ceEEe-cCCcHHHHHHHHHHHHHHHhh
Q 011959 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTS-LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~~~-~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.....+.++.+.... ....++.+.|.++||.+.....+ .++++ ..+|++++++++++|++++++
T Consensus 371 ~~~~~~~~v~~~~~~--------------~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~ 436 (497)
T 3mc6_A 371 MGNPRYSVISFSSKT--------------LNIHELSDRLSKKGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQE 436 (497)
T ss_dssp CSCCCSSEEEEECTT--------------TTHHHHHHHHHTTTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHH
T ss_pred ecCCCeeEEEEeCCC--------------CCHHHHHHHHHhCCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 112345555544211 11357889999999988776433 34553 256999999999999998864
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=205.85 Aligned_cols=311 Identities=10% Similarity=0.076 Sum_probs=200.5
Q ss_pred ccCCCCCHHHHHHHHHH----HHhc-CCCC-CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEE
Q 011959 111 AIIGHADDQVLAALGET----MKKG-TSFG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 184 (474)
Q Consensus 111 ~~lG~~~p~v~~a~~~~----~~~~-~~~~-~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~i 184 (474)
.+.+-.+|.|.++.... .+.+ ..|+ +..+...++++++++++ +.+++++++||++|+..+++ ...++++|
T Consensus 99 ~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~-g~~~~i~~~sGt~al~~~l~---~~~~Gd~V 174 (464)
T 1ibj_A 99 DPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLD-KADRAFCFTSGMAALSAVTH---LIKNGEEI 174 (464)
T ss_dssp CTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHT---TSCTTCEE
T ss_pred CCCCCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHH---HhCCCCEE
Confidence 34444566677665532 1121 1222 24567889999999988 45688999999999988876 44567889
Q ss_pred EEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccC
Q 011959 185 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 264 (474)
Q Consensus 185 i~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~ 264 (474)
|+.++.||+........ ....+.++..++.+|+++|++.++ +++++|++++++|++|.+.+
T Consensus 175 i~~~~~y~~~~~~~~~~----------------~~~~G~~v~~v~~~d~~~l~~~i~---~~tk~v~l~~p~NptG~v~~ 235 (464)
T 1ibj_A 175 VAGDDVYGGSDRLLSQV----------------VPRSGVVVKRVNTTKLDEVAAAIG---PQTKLVWLESPTNPRQQISD 235 (464)
T ss_dssp EEESSCCHHHHHHHHHT----------------SGGGTCEEEEECTTSHHHHHHHCC---SSEEEEEECSSCTTTCCCCC
T ss_pred EEECCCchhHHHHHHHH----------------HHHcCCEEEEeCCCCHHHHHHHhc---cCceEEEEeCCCCCCCEeec
Confidence 99999998743221000 011122466677779999999886 36899999999999999997
Q ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCC--CcceEEEEec-HHHHHhhcCCC
Q 011959 265 KPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGGR-RDIMEMVAPAG 339 (474)
Q Consensus 265 ~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~--G~~iG~~~~~-~~i~~~~~~~~ 339 (474)
+++|.++|++||++||+||+|... ..+....+ ..|++ +++|.+++ |+++|+++++ +++++.+..
T Consensus 236 ----l~~i~~la~~~gi~livDea~~~g---~~~~~~~~--~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~-- 304 (464)
T 1ibj_A 236 ----IRKISEMAHAQGALVLVDNSIMSP---VLSRPLEL--GADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF-- 304 (464)
T ss_dssp ----HHHHHHHHHTTTCEEEEECTTTCT---TTCCGGGT--TCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHH--
T ss_pred ----HHHHHHHHHHcCCEEEEECCCccc---ccCChhhc--CCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHH--
Confidence 999999999999999999999621 11111113 35665 79999985 8999999998 478777752
Q ss_pred CcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH----------hhhcCCe----eEEeeeceeEE
Q 011959 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA----------GKKAGHA----ICGGYISGMFG 405 (474)
Q Consensus 340 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~----------~~~~~~~----~~v~~~g~~~~ 405 (474)
.......+.+++.+.++.++|+.+. ..+++..++...+.+.|++. +.+++.. ...++.|.+++
T Consensus 305 -~~~~~g~~~~~~~~~a~~~al~~~~--~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~ 381 (464)
T 1ibj_A 305 -LQNSEGSGLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFS 381 (464)
T ss_dssp -HHHHTTCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEE
T ss_pred -HHHhcCCCCCHHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEE
Confidence 2211234567888888887775321 11222223333333333321 1111100 01234577888
Q ss_pred EEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---------------------------CcceEEecCCcHH
Q 011959 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------------------------FEAGFTSLAHSSD 458 (474)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------------~~~~~~~~~~t~e 458 (474)
+.+.+ ......+.+.|...||.+..+. ...+|+++.. |
T Consensus 382 ~~l~~-------------~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--e 446 (464)
T 1ibj_A 382 FITGS-------------VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--E 446 (464)
T ss_dssp EECSC-------------HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--S
T ss_pred EEECC-------------HHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--C
Confidence 87621 1122456677666777665442 2356887766 8
Q ss_pred HHHHHHHHHHHHHhh
Q 011959 459 DIQHTITAAEKVLRQ 473 (474)
Q Consensus 459 ~i~~~l~~l~~~~~~ 473 (474)
+++++++.|++++++
T Consensus 447 di~~li~~L~~al~~ 461 (464)
T 1ibj_A 447 DVDDLISDLDIAFKT 461 (464)
T ss_dssp CHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999875
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-22 Score=197.99 Aligned_cols=305 Identities=17% Similarity=0.079 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchh
Q 011959 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197 (474)
Q Consensus 118 p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~ 197 (474)
|++++++.+.+..+. + ++.+...++.+.+++++ +.+++++++||++|++.+++.+. ...+++|++..++|++...
T Consensus 17 ~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~la~~~-~~~~~i~~~sgt~al~~~l~~l~-~~~gd~Vi~~~~~~~~~~~- 91 (373)
T 3frk_A 17 YEIKFKFEEIYKRNW-F-ILGDEDKKFEQEFADYC-NVNYCIGCGNGLDALHLILKGYD-IGFGDEVIVPSNTFIATAL- 91 (373)
T ss_dssp HHHHHHHHHHHHHTC-C-SSSHHHHHHHHHHHHHH-TSSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEETTSCTHHHH-
T ss_pred HHHHHHHHHHHHCCC-c-cCCchHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCCcHHHHH-
Confidence 456666666665542 2 45677788888888887 55699999999999999999531 3456788888888888443
Q ss_pred HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Q 011959 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (474)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (474)
.+...|..+...+.....+ .+ |+++|++.+++ ++++|+ +++++|.+.+ +++|.++|+
T Consensus 92 ~~~~~g~~~~~~~~~~~~~----------~~---d~~~l~~~l~~---~~~~v~---~~n~~G~~~~----l~~i~~l~~ 148 (373)
T 3frk_A 92 AVSYTGAKPIFVEPDIRTY----------NI---DPSLIESAITE---KTKAII---AVHLYGQPAD----MDEIKRIAK 148 (373)
T ss_dssp HHHHHSCEEEEECEETTTT----------EE---CGGGTGGGCCT---TEEEEE---EECCTTCCCC----HHHHHHHHH
T ss_pred HHHHcCCEEEEEecccccc----------Cc---CHHHHHHhcCC---CCeEEE---EECCCcCccc----HHHHHHHHH
Confidence 3444444322111100000 00 78888887763 677777 3456788777 999999999
Q ss_pred HhCCEEEEeccccCcccCCCccccccCCCCceeehh----hhcCC-CcceEEEEec-HHHHHhhcC---CCC------cc
Q 011959 278 ENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGGR-RDIMEMVAP---AGP------MY 342 (474)
Q Consensus 278 ~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~s----K~l~~-G~~iG~~~~~-~~i~~~~~~---~~~------~~ 342 (474)
+||++||+||+|+.. ..+....++..+|++++| |.+++ |. .|+++++ +++.+.+.. .+. ..
T Consensus 149 ~~~~~li~D~a~~~g---~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 224 (373)
T 3frk_A 149 KYNLKLIEDAAQAHG---SLYKGMKVGSLGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAEKIKALSNYGSEKKYHHIY 224 (373)
T ss_dssp HHTCEEEEECTTCTT---CEETTEETTSSSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHHHHHHHHBTTCSBTTBCCS
T ss_pred HcCCEEEEECCcccC---CEECCEeccccccEEEEeCcCCCccCccce-eEEEEeCCHHHHHHHHHHHhcCcccCCcccc
Confidence 999999999999622 111223445556888766 99987 64 7888775 456555442 110 11
Q ss_pred cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-eeceeEEEEEecCCCcCcccccc
Q 011959 343 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKK 421 (474)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~ 421 (474)
.+.++..+++.++.+...++.+ ++..++.+++.+++++.|.++. ..++.... ....+..+.+...
T Consensus 225 ~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~---------- 290 (373)
T 3frk_A 225 KGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPN--VIIPVEADYAKHVWYTFVIRSE---------- 290 (373)
T ss_dssp CCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTT--EECCCCCTTEECCCSSEEEEES----------
T ss_pred ccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCc--eEeccCCCCCceeeEEEEEEeC----------
Confidence 1234456777777766666543 3455666666666666654432 11110000 1111111111110
Q ss_pred cchHHHHHHHHHHHHCCeEecccCC---------------------------cceEEe--cCCcHHHHHHHHHHHHHHHh
Q 011959 422 SETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS--LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 422 ~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------------~~~~~~--~~~t~e~i~~~l~~l~~~~~ 472 (474)
....+.+.|.++||.+.+... ..++++ ..+|++||++++++|+++..
T Consensus 291 ----~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 291 ----KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp ----SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC-
T ss_pred ----CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence 135788999999999875431 124664 56799999999999987654
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-22 Score=197.91 Aligned_cols=232 Identities=15% Similarity=0.123 Sum_probs=164.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHh----cCCCCccCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK----AGSGVATLGL 211 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~----~g~~~~~~~~ 211 (474)
+.++...+|+++++++. +.+.+++++||++|++.++. ....++.||+.++.||+........ .|
T Consensus 64 ~~~p~~~~l~~~la~l~-g~~~~~~~~sG~~Ai~~~~~---l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g-------- 131 (400)
T 3nmy_A 64 THNPTRFAYERCVAALE-GGTRAFAFASGMAATSTVME---LLDAGSHVVAMDDLYGGTFRLFERVRRRTAG-------- 131 (400)
T ss_dssp TCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHT---TSCTTCEEEEESSCCHHHHHHHHHTHHHHHC--------
T ss_pred CCCHHHHHHHHHHHHHh-CCCCEEEecCHHHHHHHHHH---HcCCCCEEEEeCCCchHHHHHHHHhhHhhcC--------
Confidence 45677788888888887 45688999999999998544 3445678888888888754433221 12
Q ss_pred CCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 011959 212 PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291 (474)
Q Consensus 212 ~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (474)
.++..++++|++++++.++. ++++|++|+++|++|.+.+ +++|+++|++||++||+||+|+.
T Consensus 132 -----------~~~~~v~~~d~~~l~~~i~~---~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~~ 193 (400)
T 3nmy_A 132 -----------LDFSFVDLTDPAAFKAAIRA---DTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFAS 193 (400)
T ss_dssp -----------CEEEEECTTSHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH
T ss_pred -----------eEEEEECCCCHHHHHHHhcc---CCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc
Confidence 13666777899999999863 6899999999999999998 99999999999999999999952
Q ss_pred cccCCCccccccCCCCceeehhhhcCC-CcceEE--E-EecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCC
Q 011959 292 FRLAYGGAQEYFGVTPDLTTLGKIIGG-GLPVGA--Y-GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367 (474)
Q Consensus 292 ~r~g~~~~~~~~g~~pdi~t~sK~l~~-G~~iG~--~-~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 367 (474)
.. .+....+|.++.+.+++|.++| |.++|+ + ..++++++.+.. .....+...+|+.+..++..++.+ +
T Consensus 194 ~~---~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~---~~~~~g~~~~~~~a~~~l~~l~~l--~ 265 (400)
T 3nmy_A 194 PM---LQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAF---LQNSIGGVQGPFDSFLALRGLKTL--P 265 (400)
T ss_dssp HH---HCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHH---HHHHHCCBCCHHHHHHHHHHHTTH--H
T ss_pred cc---cCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHH---HHHhcCCCCCHHHHHHHHHhHhHH--H
Confidence 21 1111224555555579999995 566655 4 347778777752 223345677888888877776543 2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCeeEE------------------eeeceeEEEEEe
Q 011959 368 GTYEYLNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFT 409 (474)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v------------------~~~g~~~~i~~~ 409 (474)
...++..++.+.+.+.|++ ++.+..+ ++.|.|++|++.
T Consensus 266 ~r~~~~~~~a~~l~~~L~~----~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~ 321 (400)
T 3nmy_A 266 LRMRAHCENALALAQWLET----HPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLK 321 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHc----CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeC
Confidence 3445555666666655543 4544444 678999999985
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.1e-22 Score=195.39 Aligned_cols=307 Identities=13% Similarity=0.084 Sum_probs=194.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHh-hcCCcEEEEEeCCCCCC
Q 011959 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA-FTGRERIIKFEGCYHGH 194 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~-~~~~~~ii~~~~~yhg~ 194 (474)
.+|++++++.++++++. ..+.....++.+.+++++ +.+++++++||++|++.+++.++. ..++++|++.+++||+.
T Consensus 11 ~~~~v~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~ 87 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSKQ--LTQGKRSLLFEEALCEFL-GVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVAT 87 (375)
T ss_dssp CCHHHHHHHHHHHTSSC--CSSSHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHH
T ss_pred CCHHHHHHHHHHHHcCc--ccCChHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhH
Confidence 58999999999987642 234666788888888888 455999999999999999996421 34567888888888885
Q ss_pred chhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHH
Q 011959 195 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (474)
Q Consensus 195 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (474)
...+ ...|..+...+... .+ ..|+++|++.+++ ++++|++..+ +|.+.+ +++|.+
T Consensus 88 ~~~~-~~~g~~~~~~~~~~-~~-------------~~d~~~l~~~i~~---~~~~v~~~~~---tG~~~~----l~~i~~ 142 (375)
T 2fnu_A 88 ANML-LESGYTPVFAGIKN-DG-------------NIDELALEKLINE---RTKAIVSVDY---AGKSVE----VESVQK 142 (375)
T ss_dssp HHHH-HHTTCEEEECCBCT-TS-------------SBCGGGSGGGCCT---TEEEEEEECG---GGCCCC----HHHHHH
T ss_pred HHHH-HHCCCEEEEeccCC-CC-------------CCCHHHHHhhcCc---CceEEEEeCC---cCCccC----HHHHHH
Confidence 5443 33443322211100 00 0177888877753 5676665544 788877 999999
Q ss_pred HHHHhCCEEEEeccccCc-ccCCCccccccCCCCc--eeehh--hhcCCCcceEEEEe-c-HHHHHhhcCCCCcc-----
Q 011959 275 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD--LTTLG--KIIGGGLPVGAYGG-R-RDIMEMVAPAGPMY----- 342 (474)
Q Consensus 275 l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pd--i~t~s--K~l~~G~~iG~~~~-~-~~i~~~~~~~~~~~----- 342 (474)
+|++||++||+||+|+.+ ... ...++..+| +.++| |.+++| +|++++ + +++++.+.......
T Consensus 143 l~~~~~~~li~D~a~~~~~~~~----~~~~~~~~~i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (375)
T 2fnu_A 143 LCKKHSLSFLSDSSHALGSEYQ----NKKVGGFALASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKLFRSHGMLKKD 216 (375)
T ss_dssp HHHHHTCEEEEECTTCTTCEET----TEETTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHTBTTEEESS
T ss_pred HHHHcCCEEEEECccccCCeEC----CeeccccCCeEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHHHHhcCCcccc
Confidence 999999999999999643 211 112232234 44788 999764 788866 3 67776654211000
Q ss_pred --------cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE-----eeeceeEEEEEe
Q 011959 343 --------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-----GYISGMFGFFFT 409 (474)
Q Consensus 343 --------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-----~~~g~~~~i~~~ 409 (474)
...++..+++.++++...++.+ ++..++.+++.+++.+.|+++. ++.... ...+.++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 291 (375)
T 2fnu_A 217 FFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDNP---YFTPLHPLLKDKSSNHLYPILMH 291 (375)
T ss_dssp SSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTCS---SEEESGGGCSSCCCCSCEEEEEC
T ss_pred ccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC---CccccCCCCCCCcceEEEEEEeC
Confidence 1112355676666665544322 3566667777777777776531 111100 112334455553
Q ss_pred cCCCcCcccccccchH-HHHHHHHHHHHCCeEecccC-----------------C--------cceEEecC--CcHHHHH
Q 011959 410 EGPVYNFEDAKKSETT-KFARFYRGMLEEGVYFAPSQ-----------------F--------EAGFTSLA--HSSDDIQ 461 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~Gv~v~~~~-----------------~--------~~~~~~~~--~t~e~i~ 461 (474)
.. .. ....+.+.|.++||.+.... . ..+|+++. +|++|++
T Consensus 292 ~~------------~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~ 359 (375)
T 2fnu_A 292 QK------------FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQ 359 (375)
T ss_dssp GG------------GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred cc------------ccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHH
Confidence 21 00 23578888999999987311 0 24677644 5999999
Q ss_pred HHHHHHHHHHhh
Q 011959 462 HTITAAEKVLRQ 473 (474)
Q Consensus 462 ~~l~~l~~~~~~ 473 (474)
+++++|++++++
T Consensus 360 ~~~~~l~~~~~~ 371 (375)
T 2fnu_A 360 NIAHSVLKTFES 371 (375)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-21 Score=197.77 Aligned_cols=340 Identities=14% Similarity=0.058 Sum_probs=205.7
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACM 169 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~-~-~~~v~~~~sGseA~~ 169 (474)
.+..|+|+..+ +..++.+++++.....+.....+ ..+++.++.++++++++ + .+.++|++||++|+.
T Consensus 99 ~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~ 172 (497)
T 2qma_A 99 QHPDCIAHLHT------PPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQ 172 (497)
T ss_dssp TSTTBCSSSCC------CCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHH
T ss_pred CCCCeeEeCCC------CCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHH
Confidence 34556665544 33568888887665543221111 23567778888999985 2 378999999999999
Q ss_pred HHHHHhHhh------------cC-----CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-
Q 011959 170 GVLRLARAF------------TG-----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN- 231 (474)
Q Consensus 170 ~al~~ar~~------------~~-----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 231 (474)
.+++.+|.. .| ++..|+.....|......+...|.+. .++..+|.+
T Consensus 173 ~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~----------------~~v~~v~~~~ 236 (497)
T 2qma_A 173 MGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGE----------------KAVMTVDANA 236 (497)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCG----------------GGEEEECBCT
T ss_pred HHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCc----------------ccEEEEecCC
Confidence 999987632 11 23255555556665555554444321 012333332
Q ss_pred ----CHHHHHHHHhcC---CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcccccc
Q 011959 232 ----DVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 303 (474)
Q Consensus 232 ----d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~ 303 (474)
|+++|++.+++. +..+.+|+++..++++|.+.| +++|.++|++||++|++|++|.++ .... +.....
T Consensus 237 ~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~ 311 (497)
T 2qma_A 237 DGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLK 311 (497)
T ss_dssp TSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGT
T ss_pred CCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhc
Confidence 788999988742 112447777777778899888 999999999999999999999887 5433 332334
Q ss_pred CC-CCceee--hhhhcCCCcceEEEEecHH-HHHhhcCCCCcc-cccCCCCChHHH----------HHHHHHHHHhcC--
Q 011959 304 GV-TPDLTT--LGKIIGGGLPVGAYGGRRD-IMEMVAPAGPMY-QAGTLSGNPLAM----------TAGIHTLKRLKE-- 366 (474)
Q Consensus 304 g~-~pdi~t--~sK~l~~G~~iG~~~~~~~-i~~~~~~~~~~~-~~~t~~~~~~~~----------aaa~aal~~~~~-- 366 (474)
++ .+|+++ ++|++++++++|+++++++ .++.+.....+. ...+...++... .+..++++.+..
T Consensus 312 gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g 391 (497)
T 2qma_A 312 GVERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKA 391 (497)
T ss_dssp TGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHH
T ss_pred CcccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHH
Confidence 55 678775 5999998789999987644 345443211111 111111122211 122344554432
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc-
Q 011959 367 -PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS- 444 (474)
Q Consensus 367 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~- 444 (474)
+++.++..++++++.+.|++.. ++.......+.++.+.+..... ........+.+.|.++|+++.+.
T Consensus 392 ~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~v~f~~~~~~~--------~~~~l~~~l~~~l~~~G~~~~~~~ 460 (497)
T 2qma_A 392 LGDMYDHLLAQTLEVADMIRTND---QFELLAEPSLSTVLFRATHETA--------DLDELNKALRLEALTRGIAVLGET 460 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCT---TEEECSCCSSSEEEEEECCSSS--------CHHHHHHHHHHHHHHHTSCBCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC---CeEEEcCCCceEEEEEEcCCcc--------CHHHHHHHHHHHHHhCCCEEEEee
Confidence 3456667777777777776531 1111112345566776643210 01122356778889999988653
Q ss_pred ---CCcceEEec---CCcHHHHHHHHHHHHHHHhhC
Q 011959 445 ---QFEAGFTSL---AHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 445 ---~~~~~~~~~---~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+...+|+++ .+|++++++++++|+++++++
T Consensus 461 ~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 461 IVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 223567654 679999999999999998764
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=189.69 Aligned_cols=275 Identities=13% Similarity=0.032 Sum_probs=182.1
Q ss_pred HHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHH---hcCCCCccCCCCCCCCCCC
Q 011959 143 VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPK 219 (474)
Q Consensus 143 ~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~g~~~ 219 (474)
+|.+.+++++ +.+..++++||++|++.+++.. ..++++|++.++.||+....... ..|.
T Consensus 2 ~l~~~la~~~-g~~~~i~~~sG~~a~~~~~~~~--~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~--------------- 63 (331)
T 1pff_A 2 ALEGKIAKLE-HAEACAATASGMGAIAASVWTF--LKAGDHLISDDCLYGCTHALFEHQLRKFGV--------------- 63 (331)
T ss_dssp HHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC---------------
T ss_pred hHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHh--cCCCCEEEEcCCCcchHHHHHHHHHHhcCC---------------
Confidence 3455555555 4457788888999999999952 34567899999999885444321 1221
Q ss_pred CCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH-hCCEEEEeccccCcccCCCc
Q 011959 220 GATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGFRLAYGG 298 (474)
Q Consensus 220 ~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-~g~llI~DEv~~g~r~g~~~ 298 (474)
++..++..|++++++.++ +++++|++++++|++|.+.+ +++|.++|++ ||+++|+||+|+.+.....
T Consensus 64 ----~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~~~~~~- 131 (331)
T 1pff_A 64 ----EVDFIDMAVPGNIEKHLK---PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASPILTNP- 131 (331)
T ss_dssp ----EEEEECTTSTTHHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHHHHCCG-
T ss_pred ----EEEEeCCCCHHHHHHhhc---CCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCcccccCCh-
Confidence 344555668889988886 36899999999999999998 9999999999 9999999999963311111
Q ss_pred cccccCCCCceeehhhhcCC-Ccc-eEEEEecH-HHHHhhcCCCCcccc-cCCCCChHHHHHHHHHHHHhcCCCHHHHHH
Q 011959 299 AQEYFGVTPDLTTLGKIIGG-GLP-VGAYGGRR-DIMEMVAPAGPMYQA-GTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 374 (474)
Q Consensus 299 ~~~~~g~~pdi~t~sK~l~~-G~~-iG~~~~~~-~i~~~~~~~~~~~~~-~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 374 (474)
. .++....+.+++|.+++ |.| +|++++++ ++++.+.+ .... .+.+.+++++.++.++++.+. ...++..
T Consensus 132 -~-~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~ 204 (331)
T 1pff_A 132 -L-DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQ---GIKDITGAIISPHDAWLITRGTLTLD--MRVKRAA 204 (331)
T ss_dssp -G-GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHT---CCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred -h-hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHH---HHHhhcCCCCCHHHHHHHHcCcchHH--HHHHHHH
Confidence 1 23433334479999984 788 79999998 89888874 2233 345778888888777776542 2334444
Q ss_pred HHHHHHHHHHHHHh----------hhcC-Ce---eEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeE
Q 011959 375 KITGELTQGIIDAG----------KKAG-HA---ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (474)
Q Consensus 375 ~~~~~l~~~L~~~~----------~~~~-~~---~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (474)
++.+.+.+.|++.. .+.+ +. ...++.|.++.+.+.+ ...+.+.|.++||+
T Consensus 205 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~gI~ 268 (331)
T 1pff_A 205 ENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG----------------LEKAKKVLDNCHVV 268 (331)
T ss_dssp HHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS----------------HHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC----------------HHHHHHHHHhCCCc
Confidence 55555555554321 0011 00 0113457777777631 14566777888997
Q ss_pred ecccC------------------------------CcceEEe--cCCcHHHHHHHHHHHHHH
Q 011959 441 FAPSQ------------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 441 v~~~~------------------------------~~~~~~~--~~~t~e~i~~~l~~l~~~ 470 (474)
+.+.. ...+|++ ...|+++++.++++|+++
T Consensus 269 ~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 269 SLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp EECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred eeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 64321 2345664 566889999998888754
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-22 Score=196.09 Aligned_cols=301 Identities=14% Similarity=0.049 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchh
Q 011959 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197 (474)
Q Consensus 118 p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~ 197 (474)
|++.+++.+.+..+. .++.....++.+.+++++ +.+++++++||++|++.+++.++ ..++++|++..++|++....
T Consensus 16 ~~v~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~~~~~~sGt~al~~al~~~~-~~~gd~Vi~~~~~~~~~~~~ 91 (367)
T 3nyt_A 16 DKIDAGIQRVLRHGQ--YILGPEVTELEDRLADFV-GAKYCISCANGTDALQIVQMALG-VGPGDEVITPGFTYVATAET 91 (367)
T ss_dssp HHHHHHHHHHHHHCC--CSSCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTHHHHH
T ss_pred HHHHHHHHHHHhcCC--ccCChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHhC-CCCcCEEEECCCccHHHHHH
Confidence 456666666665542 235677788888888887 45699999999999999999642 34567888888888774443
Q ss_pred HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Q 011959 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (474)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (474)
+...|..+...+.....+ .-|+++|++.++ +++++|+++ +++|...+ +++|+++|+
T Consensus 92 -~~~~G~~~~~~~~~~~~~-------------~~d~~~l~~~i~---~~~~~v~~~---~~~G~~~~----~~~i~~la~ 147 (367)
T 3nyt_A 92 -VALLGAKPVYVDIDPRTY-------------NLDPQLLEAAIT---PRTKAIIPV---SLYGQCAD----FDAINAIAS 147 (367)
T ss_dssp -HHHTTCEEEEECBCTTTC-------------SBCGGGTGGGCC---TTEEEECCB---CGGGCCCC----HHHHHHHHH
T ss_pred -HHHcCCEEEEEecCCccC-------------CcCHHHHHHhcC---cCCcEEEee---CCccChhh----HHHHHHHHH
Confidence 334444322211110000 017888888875 367888743 34576666 999999999
Q ss_pred HhCCEEEEecccc-Cc-ccCCCccccccCCCCceeehh----hhcCC-CcceEEEEe-cHHHHHhhcCCCCc--------
Q 011959 278 ENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGG-RRDIMEMVAPAGPM-------- 341 (474)
Q Consensus 278 ~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~t~s----K~l~~-G~~iG~~~~-~~~i~~~~~~~~~~-------- 341 (474)
+||++||+||+|+ |. ..+. ..+...|++++| |.+++ |. .|+++. ++++++.+......
T Consensus 148 ~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~ 221 (367)
T 3nyt_A 148 KYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHH 221 (367)
T ss_dssp HTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEE
T ss_pred HcCCEEEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCcee
Confidence 9999999999995 44 3322 222233887665 99997 76 888877 56777666421110
Q ss_pred -ccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeE-EeeeceeEEEEEecCCCcCcccc
Q 011959 342 -YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDA 419 (474)
Q Consensus 342 -~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g~~~~i~~~~~~~~~~~~~ 419 (474)
..+.++..+++.++++++.++.+ ++..++.+++.+++++.|.++....+.... ......++.+.+.
T Consensus 222 ~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 289 (367)
T 3nyt_A 222 IRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD---------- 289 (367)
T ss_dssp CSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS----------
T ss_pred eccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC----------
Confidence 11346778899999988888755 456677778888888888776321111100 0111112222221
Q ss_pred cccchHHHHHHHHHHHHCCeEecccCC-c-----------------------ceEEe--cCCcHHHHHHHHHHHHHH
Q 011959 420 KKSETTKFARFYRGMLEEGVYFAPSQF-E-----------------------AGFTS--LAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~-----------------------~~~~~--~~~t~e~i~~~l~~l~~~ 470 (474)
....+.+.|.++||.+.+... + .++++ ...|++|++++++.+.+.
T Consensus 290 ------~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 290 ------NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp ------SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred ------CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 125788899999998865432 0 12454 466999999999998764
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-21 Score=191.45 Aligned_cols=322 Identities=16% Similarity=0.069 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCc
Q 011959 117 DDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 195 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~ 195 (474)
+|++++++.+.++.+ +.. ..+...++.+.+++++ +.+++++++||++|++.+++..+ ..++++|++.+++|++..
T Consensus 11 ~~~v~~a~~~~~~~~--~~~~~g~~~~~l~~~la~~~-~~~~v~~~~ggt~al~~~~~~l~-~~~gd~Vl~~~~~~~~~~ 86 (394)
T 1o69_A 11 GGNELKYIEEVFKSN--YIAPLGEFVNRFEQSVKDYS-KSENALALNSATAALHLALRVAG-VKQDDIVLASSFTFIASV 86 (394)
T ss_dssp -CCHHHHHHHHHHHT--TTSCTTHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCGGGT
T ss_pred CHHHHHHHHHHHHcC--CccCCChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHcC-CCCCCEEEECCCccHHHH
Confidence 467888888888763 221 1345677888888777 56899999999999999999532 345678999999998865
Q ss_pred hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHH
Q 011959 196 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 275 (474)
Q Consensus 196 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l 275 (474)
..+. ..|..+..++.. ..+ ..|+++|++.+++.++++++|++++ ++|...+ +++|.++
T Consensus 87 ~~~~-~~g~~~~~v~~~-~~~-------------~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~----l~~i~~l 144 (394)
T 1o69_A 87 APIC-YLKAKPVFIDCD-ETY-------------NIDVDLLKLAIKECEKKPKALILTH---LYGNAAK----MDEIVEI 144 (394)
T ss_dssp HHHH-HTTCEEEEECBC-TTS-------------SBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC----HHHHHHH
T ss_pred HHHH-HcCCEEEEEEeC-CCC-------------CcCHHHHHHHHhcccCCceEEEEEC---CCCChhh----HHHHHHH
Confidence 4443 334322221111 000 0189999999975433577888876 3565555 9999999
Q ss_pred HHHhCCEEEEecccc-Cc-ccCCCccccccCCCCceeeh--hhhcCCCcceEEEEec-HHHHHhhcCCCCcc-------c
Q 011959 276 TKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGR-RDIMEMVAPAGPMY-------Q 343 (474)
Q Consensus 276 ~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~t~--sK~l~~G~~iG~~~~~-~~i~~~~~~~~~~~-------~ 343 (474)
|++||++||+||+|+ |+ ..+.... . ++ ..|+.++ +|.++ |.++|+++++ +++++.+....... .
T Consensus 145 ~~~~~~~li~Dea~~~g~~~~~~~~~-~-~~-~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 220 (394)
T 1o69_A 145 CKENDIVLIEDAAEALGSFYKNKALG-T-FG-EFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENCLHYE 220 (394)
T ss_dssp HHHTTCEEEEECTTCTTCEETTEETT-S-SS-SEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCC
T ss_pred HHHcCCEEEEECcCcccceeCCcccc-c-cc-CcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccCcccc
Confidence 999999999999997 77 4432110 1 11 3577788 56665 5689999995 78877765211110 0
Q ss_pred ----ccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeece--eEEEEEecCC-----
Q 011959 344 ----AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG--MFGFFFTEGP----- 412 (474)
Q Consensus 344 ----~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~--~~~i~~~~~~----- 412 (474)
+..++.+++.+++++..++.++ +..++++++.+++++.|.++ .+...... ...+. ++.+.+....
T Consensus 221 ~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~ 296 (394)
T 1o69_A 221 HLDYGYNYRLSNVLGAIGVAQMEVLE--QRVLKKREIYEWYKEFLGEY-FSFLDELE-NSRSNRWLSTALINFDKNELNA 296 (394)
T ss_dssp CSSCCCBCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTT-EECCCCCT-TEECCCSSEEEEESCCGGGSCC
T ss_pred ccccCcccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccc-ccccCCCC-CCcceeEEEEEEecchhhcccc
Confidence 1112246677777666555443 36677788888888887664 21110000 00122 3455553110
Q ss_pred CcCccccccc---chHHHHHHHHHHHHCCeEecccCCc------------------------ceEE--ecCCcHHHHHHH
Q 011959 413 VYNFEDAKKS---ETTKFARFYRGMLEEGVYFAPSQFE------------------------AGFT--SLAHSSDDIQHT 463 (474)
Q Consensus 413 ~~~~~~~~~~---~~~~~~~~~~~l~~~Gv~v~~~~~~------------------------~~~~--~~~~t~e~i~~~ 463 (474)
..++...... .......+.+.|.++||.++++..+ .+++ ....|++|++++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~ 376 (394)
T 1o69_A 297 CQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEI 376 (394)
T ss_dssp CCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred ccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHH
Confidence 0000000000 0123467889999999999876321 0111 234799999999
Q ss_pred HHHHHHHHh
Q 011959 464 ITAAEKVLR 472 (474)
Q Consensus 464 l~~l~~~~~ 472 (474)
+++|+++++
T Consensus 377 ~~~l~~~~~ 385 (394)
T 1o69_A 377 SKLILKSIK 385 (394)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=194.49 Aligned_cols=307 Identities=17% Similarity=0.129 Sum_probs=196.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCch
Q 011959 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (474)
++++.+++.+.+..+. +..+.....+|.+.+++++ +.+++++++||++|++.+++.++ ...+++|++.+++|++...
T Consensus 35 ~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~-~~~~~i~~~~gt~al~~~l~~~~-~~~gd~vl~~~~~~~~~~~ 111 (391)
T 3dr4_A 35 DGNERDYVLECMDTTW-ISSVGRFIVEFEKAFADYC-GVKHAIACNNGTTALHLALVAMG-IGPGDEVIVPSLTYIASAN 111 (391)
T ss_dssp CSSHHHHHHHHHHHTC-CSSCSHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHHT-CCTTCEEEEESSSCTHHHH
T ss_pred CHHHHHHHHHHHHcCC-ccCCChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCchHHHHH
Confidence 4778888888887643 3235677788888888888 45689999999999999999632 4456789999999988644
Q ss_pred hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHH
Q 011959 197 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 197 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
.+ ...|..+..++.....+. -|+++|++.++ +++++|+++ +++|.+.+ +++|.++|
T Consensus 112 ~~-~~~g~~~~~~~~~~~~~~-------------~d~~~l~~~~~---~~~~~v~~~---n~tG~~~~----~~~i~~l~ 167 (391)
T 3dr4_A 112 SV-TYCGATPVLVDNDPRTFN-------------LDAAKLEALIT---PRTKAIMPV---HLYGQICD----MDPILEVA 167 (391)
T ss_dssp HH-HHTTCEEEEECBCTTTCS-------------BCGGGSGGGCC---TTEEEECCB---CGGGCCCC----HHHHHHHH
T ss_pred HH-HHCCCEEEEEecCccccC-------------cCHHHHHHhcC---CCceEEEEE---CCCCChhh----HHHHHHHH
Confidence 43 333432222111100000 07788887775 367777743 46787777 99999999
Q ss_pred HHhCCEEEEecccc-Cc-ccCCCccccccCCCCceeehh----hhcCCCcceEEEEec-HHHHHhhcC---CCC------
Q 011959 277 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVAP---AGP------ 340 (474)
Q Consensus 277 ~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~t~s----K~l~~G~~iG~~~~~-~~i~~~~~~---~~~------ 340 (474)
++||++||+||+|+ |. ..+ ...+..+|++++| |++++| +.|+++.+ +++.+.+.. .+.
T Consensus 168 ~~~~~~li~D~a~~~g~~~~~-----~~~~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~ 241 (391)
T 3dr4_A 168 RRHNLLVIEDAAEAVGATYRG-----KKSGSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLRGQGMDPNRRY 241 (391)
T ss_dssp HHTTCEEEEECTTCTTCEETT-----EETTSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHHBTTCCTTSTT
T ss_pred HHcCCEEEEECcccccceECC-----eeecccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHHhcCCCCCCcc
Confidence 99999999999996 33 222 1233345777655 999764 58888665 456655531 000
Q ss_pred --cccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeE-----EeeeceeEEEEEecCCC
Q 011959 341 --MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-----GGYISGMFGFFFTEGPV 413 (474)
Q Consensus 341 --~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----v~~~g~~~~i~~~~~~~ 413 (474)
...+..+..+++.+++++..++.+ ++..++.+++.+++++.|.++ ...+... ....+.++.+.+....
T Consensus 242 ~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~i~~~~~~- 316 (391)
T 3dr4_A 242 WFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL--GNRVTKPHVALTGRHVFWMYTVRLGEGL- 316 (391)
T ss_dssp CCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG--TTSEECCCCCTTSCCCCSSEEEEECSSC-
T ss_pred cccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CccccCcCCCCCCcceeEEEEEEECCcc-
Confidence 001122456677766666655543 446777777888888887765 1211111 1123334566553210
Q ss_pred cCcccccccchHHHHHHHHHHHHCCeEecccCC------------------------cceEEe--cCCcHHHHHHHHHHH
Q 011959 414 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------------------------EAGFTS--LAHSSDDIQHTITAA 467 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------------------------~~~~~~--~~~t~e~i~~~l~~l 467 (474)
.....++.+.|.++||.+.++.. ..++++ ..+|+|||++++++|
T Consensus 317 ----------~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l 386 (391)
T 3dr4_A 317 ----------STTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAAL 386 (391)
T ss_dssp ----------SSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHH
T ss_pred ----------chhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHH
Confidence 01135788999999999886631 123443 567999999999999
Q ss_pred HHHH
Q 011959 468 EKVL 471 (474)
Q Consensus 468 ~~~~ 471 (474)
++++
T Consensus 387 ~~~l 390 (391)
T 3dr4_A 387 DQVL 390 (391)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 8764
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-21 Score=188.30 Aligned_cols=304 Identities=11% Similarity=0.004 Sum_probs=196.5
Q ss_pred CCHHHHHHHHHHHHhcC-CCC--CC--CHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEe
Q 011959 116 ADDQVLAALGETMKKGT-SFG--AP--CLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 188 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~-~~~--~~--~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~ 188 (474)
.+|++++++.+.+.+.. .++ ++ .+...++.++++++++ ..+++++++||++|+..+++ .+.++ ++++..
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~---~l~~~-~~i~~~ 90 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQ---NCVEK-KSFHCV 90 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHH---HHCSS-EEEEEE
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHH---hccCC-cEEEEc
Confidence 47889999988887643 111 11 2456788888988885 35689999999999999999 45555 777777
Q ss_pred CCCCCCchh-HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHH
Q 011959 189 GCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 267 (474)
Q Consensus 189 ~~yhg~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~ 267 (474)
..+++.... .....|..+..++...... -|+++|+ + .+++++|++++++|++|.+.+
T Consensus 91 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~--~---~~~~~~v~~~~~~nptG~~~~--- 148 (362)
T 3ffr_A 91 NGSFSKRFYEFAGELGREAYKEEAAFGKG--------------FYPADIT--V---PADAEIICLTHNETSSGVSMP--- 148 (362)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCTTCC--------------CCGGGCC--C---CTTCCEEEEESEETTTTEECC---
T ss_pred CcHHHHHHHHHHHHhCCCeEEEecCCCCC--------------CCHHHHh--c---cCCccEEEEEcCCCCcceeCC---
Confidence 766663221 2222343222211111001 1677776 2 246788888888899999999
Q ss_pred HHHHHHHHHHHh-CCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCC---
Q 011959 268 FLNAIRRITKEN-GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGP--- 340 (474)
Q Consensus 268 ~l~~l~~l~~~~-g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~--- 340 (474)
+++|.++|++| |++||+||+|... .. . +... .|++ +++|.++++..+|++++++++++.+.+...
T Consensus 149 -l~~i~~la~~~p~~~li~D~a~~~~~~~---~--~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~ 220 (362)
T 3ffr_A 149 -VEDINTFRDKNKDALIFVDAVSSLPYPK---F--DWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRK 220 (362)
T ss_dssp -HHHHTTSGGGSTTSEEEEECTTTTTSSC---C--CTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHhCCCCEEEEecccccCCcc---c--ChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCC
Confidence 99999999999 9999999999632 11 0 1111 5665 578999843347888899998776652100
Q ss_pred ---c-c-----------cccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE----e
Q 011959 341 ---M-Y-----------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG----G 398 (474)
Q Consensus 341 ---~-~-----------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v----~ 398 (474)
. + ....++.+..++.++.++++.+.+ +...++.+++.+++.+.|+++. ++.... .
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~~~ 297 (362)
T 3ffr_A 221 SIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSK---VFSFGVEDAKL 297 (362)
T ss_dssp CCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCS---SEEESSSCGGG
T ss_pred CCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcc---CceeccCChhh
Confidence 0 0 001345667777777788876544 3455666666666666665530 111100 1
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEec--CCcHHHHHHHHHHHHHHH
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSL--AHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~--~~t~e~i~~~l~~l~~~~ 471 (474)
..+.++++.+.+ ...++.+.|.++||.+.++. ...+|+++ ..+++++++++++|++++
T Consensus 298 ~~~~~~~~~~~~---------------~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 298 RSMTTIVANTTM---------------LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp BCSSEEEEEESS---------------CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCCceEEEecCC---------------CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 124455555532 13678899999999998752 34578864 569999999999998864
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-20 Score=186.73 Aligned_cols=284 Identities=16% Similarity=0.094 Sum_probs=187.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++...+++++++++++ .+..++++||++|+..+++.. ...++.||+.++.|++.........
T Consensus 112 ~~~~~~~l~~~lA~l~g-~~~~v~~~sG~~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~~-------------- 174 (445)
T 1qgn_A 112 GNPTTVVLEEKISALEG-AESTLLMASGMCASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETIL-------------- 174 (445)
T ss_dssp CCHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHHHH--SCSSCEEEEETTSCHHHHHHHHHTG--------------
T ss_pred CChHHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHH--------------
Confidence 56777889999988884 457788888999999999842 2345788888888877432211000
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCe-EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEI-AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~-a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
...+.++..++.+|+++|++.++. ++ ++|++|+++|++|.+.+ +++|.++|++||++||+||+|+...
T Consensus 175 --~~~G~~v~~v~~~d~~~l~~ai~~---~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~~-- 243 (445)
T 1qgn_A 175 --PKMGITATVIDPADVGALELALNQ---KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFATPL-- 243 (445)
T ss_dssp --GGGTCEEEEECSSCHHHHHHHHHH---SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTT--
T ss_pred --HHcCCEEEEeCCCCHHHHHHHhcc---CCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccc--
Confidence 001124666777899999999984 45 89999999999999998 9999999999999999999996321
Q ss_pred CCccccccCCCCcee--ehhhhcCC-C-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
. ...+...+|++ +++|.+++ | +++|++++++++++.+.. .........+++.+..++..++.+. ...+
T Consensus 244 -~--~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~---~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~ 315 (445)
T 1qgn_A 244 -N--QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRN---LHHILGGALNPNAAYLIIRGMKTLH--LRVQ 315 (445)
T ss_dssp -T--CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHGGGHH--HHHH
T ss_pred -c--CCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHH---HHHHhCCCCCHHHHHHHHHhHHHHH--HHHH
Confidence 1 11233456877 58999995 3 479999999999887752 1111112346777666666665432 2344
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeeE------------------EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHH
Q 011959 372 YLNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~~------------------v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (474)
+..++.+++.+.|++. +.+.. .++.|.++.|++... ......+.+.
T Consensus 316 ~~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~------------~~~~~~~l~~ 379 (445)
T 1qgn_A 316 QQNSTALRMAEILEAH----PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD------------LLTTAKFVDA 379 (445)
T ss_dssp HHHHHHHHHHHHHHTC----TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC----CCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC------------HHHHHHHHHh
Confidence 5555666677766653 21111 134688889888531 1223445555
Q ss_pred HHHCCeEecccC---------------------------CcceEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 434 MLEEGVYFAPSQ---------------------------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 434 l~~~Gv~v~~~~---------------------------~~~~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
|...++.+..++ ...+|+++. .||++.+++.|+++++.+
T Consensus 380 l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--~Edid~li~~L~~al~~~ 445 (445)
T 1qgn_A 380 LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--VEDFDDLKADILQALDSI 445 (445)
T ss_dssp CSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--SSCHHHHHHHHHHHHHHC
T ss_pred CCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHHHHhhC
Confidence 432333322211 134677765 568999999999998764
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=188.39 Aligned_cols=281 Identities=16% Similarity=0.109 Sum_probs=184.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHH---HhcCCCCccCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPD 213 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~~ 213 (474)
..+...+++++++++++ .+..++++||++|++.+++.. ..++++||+.++.||+...... ...|.
T Consensus 56 ~~~~~~~l~~~la~~~g-~~~~v~~~sGt~A~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~--------- 123 (421)
T 2ctz_A 56 MNPTVDVLEKRLAALEG-GKAALATASGHAAQFLALTTL--AQAGDNIVSTPNLYGGTFNQFKVTLKRLGI--------- 123 (421)
T ss_dssp BCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEECSCCCHHHHHHHHTHHHHTTC---------
T ss_pred CChHHHHHHHHHHHHhC-CCceEEecCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHHcCC---------
Confidence 45667888888888884 456788888999999999953 4567889999999998655442 22222
Q ss_pred CCCCCCCCCCceEEc-cCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011959 214 SPGVPKGATYETLTA-PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (474)
Q Consensus 214 ~~g~~~~~~~~~~~~-~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (474)
++..+ +.+|++++++.++. ++++|++++++|++|.+.+ +++|+++|++||++||+||+|+++
T Consensus 124 ----------~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~~ 186 (421)
T 2ctz_A 124 ----------EVRFTSREERPEEFLALTDE---KTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGMG 186 (421)
T ss_dssp ----------EEEECCTTCCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGGG
T ss_pred ----------EEEEECCCCCHHHHHHhhcc---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcccc
Confidence 35556 66789999999863 6899999999999999998 999999999999999999999545
Q ss_pred -ccCCCccccccCCCCcee--ehhhhcCC-CcceEEEEec---HHH----HHhhcCCCCcc-------------------
Q 011959 293 -RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGR---RDI----MEMVAPAGPMY------------------- 342 (474)
Q Consensus 293 -r~g~~~~~~~~g~~pdi~--t~sK~l~~-G~~iG~~~~~---~~i----~~~~~~~~~~~------------------- 342 (474)
..+.. ++..+|++ +++|.+++ |.|+|++++. .++ ++.+.+....+
T Consensus 187 g~~~~~-----~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r 261 (421)
T 2ctz_A 187 GYLLRP-----LAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKAR 261 (421)
T ss_dssp GTSCCG-----GGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHH
T ss_pred cccCCc-----cccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHH
Confidence 33222 23457877 79999995 7899988664 122 22232110000
Q ss_pred ----cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE-------------------ee
Q 011959 343 ----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-------------------GY 399 (474)
Q Consensus 343 ----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-------------------~~ 399 (474)
.......+++.++++...++.+. ...++..++.+++.+.|.+ ++.+..+ ++
T Consensus 262 ~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~----~p~v~~v~~p~~~~~~~~~~~~~~~~~~ 335 (421)
T 2ctz_A 262 VDGLRDQGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLE----QPQVAWVNYPGLPHHPHHDRAQKYFKGK 335 (421)
T ss_dssp HTHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTCTTHHHHHHHHTTC
T ss_pred HHHHHhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHh----CCCeeEEECCCCCCCCCHHHHHHhccCC
Confidence 01123668888877777775432 2344445566666666654 3322222 46
Q ss_pred eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---------------------------CcceEEe
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------------------------FEAGFTS 452 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------------~~~~~~~ 452 (474)
.|.++.|++... ......+.+.+...++.+..++ ...+|++
T Consensus 336 ~g~ivsf~l~~~------------~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS 403 (421)
T 2ctz_A 336 PGAVLTFGLKGG------------YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLS 403 (421)
T ss_dssp CCSEEEEEETTH------------HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEE
T ss_pred CceEEEEEeCCC------------HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEE
Confidence 788999988531 1223344444433333332221 1234555
Q ss_pred cCCcHHHHHHHHHHHHHHH
Q 011959 453 LAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~ 471 (474)
+ ..|++|++++.|++++
T Consensus 404 ~--g~e~~~~li~~l~~al 420 (421)
T 2ctz_A 404 V--GLEHVEDLKAELKEAL 420 (421)
T ss_dssp C--CSSCHHHHHHHHHHHT
T ss_pred e--CCCCHHHHHHHHHHHh
Confidence 4 4468999999998876
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-20 Score=183.55 Aligned_cols=211 Identities=15% Similarity=0.121 Sum_probs=145.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
+.+...++.+.++++++ .+++++++||++|++.+++ . ...+++||+..+.||+.........
T Consensus 53 ~~~~~~~lr~~la~~~g-~~~~i~~~sGt~a~~~al~-~--~~~gd~Vi~~~~~y~~~~~~~~~~~-------------- 114 (393)
T 1n8p_A 53 QNPNRENLERAVAALEN-AQYGLAFSSGSATTATILQ-S--LPQGSHAVSIGDVYGGTHRYFTKVA-------------- 114 (393)
T ss_dssp CCHHHHHHHHHHHHHTT-CSEEEEESCHHHHHHHHHH-T--SCSSCEEEEESSCCHHHHHHHHHTS--------------
T ss_pred CChhHHHHHHHHHHHhC-CCcEEEECChHHHHHHHHH-H--cCCCCEEEEeCCCchHHHHHHHHHH--------------
Confidence 45666778888888874 4478888899999999998 2 3456789999988887432211000
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh----CCEEEEeccccCc
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN----GALLIFDEVMTGF 292 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~----g~llI~DEv~~g~ 292 (474)
...+.++..++.+| ++|++.++ +++++|++++++|++|.+.+ +++|.++|++| |++||+||+|+++
T Consensus 115 --~~~G~~v~~v~~~d-~~l~~~i~---~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~~ 184 (393)
T 1n8p_A 115 --NAHGVETSFTNDLL-NDLPQLIK---ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLSP 184 (393)
T ss_dssp --TTTCSCCEEESSHH-HHHHHHSC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTHH
T ss_pred --HHcCcEEEEeCCCh-HHHHHhcc---cCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCcccc
Confidence 01112356667767 88988886 36899999999999999998 99999999999 9999999999766
Q ss_pred -ccCCCccccccCCCCcee--ehhhhcCC-Ccce-EEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC
Q 011959 293 -RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366 (474)
Q Consensus 293 -r~g~~~~~~~~g~~pdi~--t~sK~l~~-G~~i-G~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 366 (474)
.. ... .++ .|++ +++|.+++ |+|+ |+++++ +++++.+.. .........++..++++..+++.+
T Consensus 185 ~~~-~~~---~~~--~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~~-- 253 (393)
T 1n8p_A 185 YIS-NPL---NFG--ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQF---LQNAIGAIPSPFDAWLTHRGLKTL-- 253 (393)
T ss_dssp HHC-CGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--
T ss_pred ccC-CHH---HcC--CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHH---HHHhcCCCCCHHHHHHHHhccchH--
Confidence 42 221 223 5665 79999994 8999 888885 788887762 111112244677777766666533
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 011959 367 PGTYEYLNKITGELTQGIID 386 (474)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~ 386 (474)
+...++..++.+.+.+.|++
T Consensus 254 ~~~~~~~~~~~~~l~~~L~~ 273 (393)
T 1n8p_A 254 HLRVRQAALSANKIAEFLAA 273 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 22344455555566655544
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-20 Score=184.57 Aligned_cols=213 Identities=15% Similarity=0.137 Sum_probs=148.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
+++...+|.+.++++++ .+..++++||++|+..+++ ....++.|++.++.|++.........
T Consensus 65 ~~p~~~~l~~~la~~~g-~~~~i~~~sG~~ai~~~~~---l~~~gd~Vl~~~~~y~~~~~~~~~~~-------------- 126 (403)
T 3cog_A 65 GNPTRNCLEKAVAALDG-AKYCLAFASGLAATVTITH---LLKAGDQIICMDDVYGGTNRYFRQVA-------------- 126 (403)
T ss_dssp -CHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHT---TSCTTCEEEEESSCCHHHHHHHHHTG--------------
T ss_pred CCchHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHH---HhCCCCEEEEeCCCcchHHHHHHHHH--------------
Confidence 45666778888888774 3466777789999999987 24566789999999988443221110
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC-CEEEEeccccCcccC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGFRLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g-~llI~DEv~~g~r~g 295 (474)
...+.++..++.+|++++++.++ +++++|++++++|++|.+.+ +++|.++|++|| ++||+||+|.++...
T Consensus 127 --~~~G~~v~~v~~~d~~~l~~~i~---~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~~~ 197 (403)
T 3cog_A 127 --SEFGLKISFVDCSKIKLLEAAIT---PETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPYFQ 197 (403)
T ss_dssp --GGGTCEEEEECTTSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTTTC
T ss_pred --HHcCCEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCcccccC
Confidence 00112466777779999999886 36899999999999999998 999999999999 999999999755211
Q ss_pred CCccccccCCCCcee--ehhhhcCC-C-cceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
.. ++...|++ +++|.+++ | +++|+++++ +++++.+.. .....+...+++.+.+++..|+.+ +...
T Consensus 198 ~~-----~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~l--~~r~ 267 (403)
T 3cog_A 198 RP-----LALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRF---LQNSLGAVPSPIDCYLCNRGLKTL--HVRM 267 (403)
T ss_dssp CT-----TTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--HHHH
T ss_pred Cc-----cccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhhHH--HHHH
Confidence 11 22346766 79999984 4 589999885 788887762 223234567888888887777543 2234
Q ss_pred HHHHHHHHHHHHHHHH
Q 011959 371 EYLNKITGELTQGIID 386 (474)
Q Consensus 371 ~~~~~~~~~l~~~L~~ 386 (474)
++..++...+.+.|++
T Consensus 268 ~~~~~n~~~l~~~l~~ 283 (403)
T 3cog_A 268 EKHFKNGMAVAQFLES 283 (403)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4444555555555543
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-19 Score=178.44 Aligned_cols=303 Identities=14% Similarity=0.122 Sum_probs=191.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhH-----hhcCCcEEEEEeCC
Q 011959 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR-----AFTGRERIIKFEGC 190 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar-----~~~~~~~ii~~~~~ 190 (474)
-+|++++++.++++++. .++.....++.+.+++++ +.+.+++++||++|++.+++.++ ...++++|++..++
T Consensus 13 ~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~ 89 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSKM--FTMGEYVKQYETQFAKTF-GSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVS 89 (390)
T ss_dssp CCHHHHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSS
T ss_pred CCHHHHHHHHHHHHcCC--CCCChHHHHHHHHHHHHH-CCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCC
Confidence 37999999999987743 235677788888888887 44589999999999999999653 13456789999999
Q ss_pred CCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHH
Q 011959 191 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 269 (474)
Q Consensus 191 yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (474)
||+....+ ...|..+..++..... ++ |+++|++.+++ ++++|++.+. .|...+ +
T Consensus 90 ~~~~~~~~-~~~g~~~~~~~~~~~~--------------~~~d~~~l~~~i~~---~~~~v~~~~~---~g~~~~----~ 144 (390)
T 3b8x_A 90 WSTTYYPL-QQYGLRVKFVDIDINT--------------LNIDIESLKEAVTD---STKAILTVNL---LGNPNN----F 144 (390)
T ss_dssp CHHHHHHH-HHTTCEEEEECBCTTT--------------CSBCHHHHHHHCCT---TEEEEEEECG---GGCCCC----H
T ss_pred cHHHHHHH-HHcCCEEEEEecCccc--------------cCcCHHHHHHHhCc---CCeEEEEECC---ccChhh----H
Confidence 98865543 3334322221111000 11 89999998863 5777777532 344455 9
Q ss_pred HHHHHHHHHhCCEEEEecccc-CcccCCCccccccCCCCceeehhhhcC----CCcceEEEEecH-HHHHhhc---CCC-
Q 011959 270 NAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTLGKIIG----GGLPVGAYGGRR-DIMEMVA---PAG- 339 (474)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pdi~t~sK~l~----~G~~iG~~~~~~-~i~~~~~---~~~- 339 (474)
++|.++|++||++||+||+|+ |... ....+|..+|+.++||..+ +| +.|++++++ ++.+.+. ..+
T Consensus 145 ~~i~~l~~~~~~~li~D~a~~~g~~~----~~~~~g~~~~~~~~s~~~~k~~~~g-~gG~~~~~~~~l~~~~~~~~~~g~ 219 (390)
T 3b8x_A 145 DEINKIIGGRDIILLEDNCESMGATF----NNKCAGTFGLMGTFSSFYSNHIATM-EGGCIVTDDEEIYHILLCIRAHGW 219 (390)
T ss_dssp HHHHHHHTTSCCEEEEECTTCTTCEE----TTEETTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTB
T ss_pred HHHHHHHHHcCCEEEEECcCcccCEE----CCcccccccceEEEEccCCCCCccC-CceEEEeCCHHHHHHHHHHHhcCC
Confidence 999999999999999999997 4421 1235677788888776443 33 358888775 6655432 111
Q ss_pred --C------------------cc----cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee
Q 011959 340 --P------------------MY----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (474)
Q Consensus 340 --~------------------~~----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (474)
. .+ .+.++..+++.++++++.|+.++ +..++.+++.+++.+.|+++. ++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~~---~~~~ 294 (390)
T 3b8x_A 220 TRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFLDKFKDHP---YLDV 294 (390)
T ss_dssp STTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTCS---SEEE
T ss_pred CccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCC---Cccc
Confidence 0 00 11233478888888888887653 566677777777777775431 1111
Q ss_pred EEe-eece--eEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------C-c------------------
Q 011959 396 CGG-YISG--MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------F-E------------------ 447 (474)
Q Consensus 396 ~v~-~~g~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~-~------------------ 447 (474)
... .... .+.+.+.... ......+.+.|.++||.+.+.. . +
T Consensus 295 ~~~~~~~~~~~~~i~~~~~~-----------~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (390)
T 3b8x_A 295 QQETGESSWFGFSFIIKKDS-----------GVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEY 363 (390)
T ss_dssp CCCCSBCCCCEEEEEECTTS-----------CCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHH
T ss_pred CCCCCCcccEEEEEEecCcC-----------cccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHH
Confidence 000 1122 2344443110 0112568888899999887521 1 1
Q ss_pred ----ceEEe--cCCcHHHHHHHHHHH
Q 011959 448 ----AGFTS--LAHSSDDIQHTITAA 467 (474)
Q Consensus 448 ----~~~~~--~~~t~e~i~~~l~~l 467 (474)
.++++ ..+|++|++++++.|
T Consensus 364 ~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 364 LDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred HhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 13554 467999999999876
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-21 Score=192.95 Aligned_cols=276 Identities=11% Similarity=0.009 Sum_probs=168.0
Q ss_pred CHHHHHHHHHHHhhCC--CC-CeEEEeCCHHHHHHHHHHHhHhhcCCc----EEEEEeCCCCCCchhHHHhcCCCCccCC
Q 011959 138 CLLENVLAEMVISAVP--SI-EMVRFVNSGTEACMGVLRLARAFTGRE----RIIKFEGCYHGHADPFLVKAGSGVATLG 210 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~--~~-~~v~~~~sGseA~~~al~~ar~~~~~~----~ii~~~~~yhg~~~~~~~~~g~~~~~~~ 210 (474)
.++++++++++..+-. .. ++|++|+|+++++..+++.. ..+++ .|++.+++|.++.. .+...|..+
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l--~~~Gd~~~~~Vlv~~P~y~~~~~-~~~~~g~~~---- 143 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHAL--SSLARSQPVSVVAAAPFYSTYVE-ETTYVRSGM---- 143 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHH--HHTSSSSSEEEEECSSCCTHHHH-HHHTTCBTT----
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHh--cCCCCCCcceEEEcCCCchhHHH-HHHHcCCeE----
Confidence 4566667766653211 24 58999999999999999842 23445 78888888876433 333333221
Q ss_pred CCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC--CEEEEecc
Q 011959 211 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEV 288 (474)
Q Consensus 211 ~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g--~llI~DEv 288 (474)
+.++. |.+.++ . +++++|+++.++|++|.+.+ + |.+ ++|+ ++||+||+
T Consensus 144 ---------------~~~~~-d~~~l~----~--~~~k~v~l~~p~NPtG~~~~--~----l~~--~~~~~~~~ii~De~ 193 (391)
T 3bwn_A 144 ---------------YKWEG-DAWGFD----K--KGPYIELVTSPNNPDGTIRE--T----VVN--RPDDDEAKVIHDFA 193 (391)
T ss_dssp ---------------EEEEE-ESTTCC----C--CSCEEEEEESSCTTTCCCCC--C----CC-------CCCEEEEECT
T ss_pred ---------------EEecC-CHHHcC----C--CCCEEEEECCCCCCCchhHH--H----HHH--HhhcCCCEEEEeCC
Confidence 12222 112222 1 25677777666788898875 2 333 2266 99999999
Q ss_pred ccCcccCCCccccccCCCCceeehhhhcC-CCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc-
Q 011959 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK- 365 (474)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~- 365 (474)
|.. ....... ...+....+.+|||.++ .|+|+||+++ ++++++.+.. .....+++.+++++.++.++|+...
T Consensus 194 y~~-~~~~~l~-~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~ 268 (391)
T 3bwn_A 194 YYW-PHYTPIT-RRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVE---YIIVNSIGVSKESQVRTAKILNVLKE 268 (391)
T ss_dssp TCS-TTTSCCC-CCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred CCC-CCCCccc-cCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHH---HhcccccCCCHHHHHHHHHHHhCcch
Confidence 962 1101111 11222222348999998 7999999987 8899888762 2232346778999999999997642
Q ss_pred ---------C--CCHHHHHHHHHHHHHHHHHHHhhhcCCe---e--------EEeeeceeEEEEEecCCCcCcccccccc
Q 011959 366 ---------E--PGTYEYLNKITGELTQGIIDAGKKAGHA---I--------CGGYISGMFGFFFTEGPVYNFEDAKKSE 423 (474)
Q Consensus 366 ---------~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~---~--------~v~~~g~~~~i~~~~~~~~~~~~~~~~~ 423 (474)
+ +..+++++++.+++.+.|++. ....+. . ..+..|+++++.+...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~------------ 335 (391)
T 3bwn_A 269 TCKSESESENFFKYGREMMKNRWEKLREVVKES-DAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE------------ 335 (391)
T ss_dssp HTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC-SSEECCCCCCEEETTTTEEECCCCSEEEEEESSS------------
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccccCCccccccccccCCCcceEEEecCCcH------------
Confidence 1 234455555555555555543 101010 0 0123455677776421
Q ss_pred hHHHHHHHHHHHHCCeEecccC-----CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 424 TTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 424 ~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
..+.+.|.++||.+.|+. ...+|+++..+++++++++++|+++++
T Consensus 336 ----~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 336 ----TDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMKL 385 (391)
T ss_dssp ----CCHHHHHHHTTEECEEGGGGTCCTTEEEEESCSCHHHHHHHHHHHHSCC-
T ss_pred ----HHHHHHHHHCCEEEccCCCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 235567778999998863 346899988899999999999987764
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-19 Score=179.19 Aligned_cols=190 Identities=16% Similarity=0.158 Sum_probs=130.3
Q ss_pred CCHHHHHHHHHHHHhcC-C-CC---CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCC
Q 011959 116 ADDQVLAALGETMKKGT-S-FG---APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 190 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~-~-~~---~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~ 190 (474)
-+|++++++.++++++. . ++ +..++..++++.+++++ +.+.+++++||++|++.+++..+ ...+++|++..++
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~-g~~~~i~~~~gt~al~~~~~~~~-~~~gd~Vl~~~~~ 91 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFN-GVPYCVPTTSGSTALMLALEALG-IGEGDEVIVPSLT 91 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSS
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCc
Confidence 36999999999998742 1 22 22455788889998887 44578899999999999999532 3456789999999
Q ss_pred CCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHH
Q 011959 191 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (474)
Q Consensus 191 yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (474)
|++....+ ...|..+..++.....+ .-|+++|++.++. ++++|++++ ++|...+ ++
T Consensus 92 ~~~~~~~~-~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~i~~---~~~~v~~~~---~~G~~~~----~~ 147 (418)
T 2c81_A 92 WIATATAV-LNVNALPVFVDVEADTY-------------CIDPQLIKSAITD---KTKAIIPVH---LFGSMAN----MD 147 (418)
T ss_dssp CTHHHHHH-HHTTCEEEEECBCTTTC-------------SBCHHHHGGGCCT---TEEEECCBC---CTTCCCC----HH
T ss_pred cHhHHHHH-HHcCCEEEEEecCCCCC-------------CcCHHHHHHhhCC---CCeEEEEeC---CcCCccc----HH
Confidence 98865443 33444322211110000 0178999888763 578877653 4677666 99
Q ss_pred HHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCc--eeeh--hhhcCCCcceEEEEec-HHHHHhhc
Q 011959 271 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD--LTTL--GKIIGGGLPVGAYGGR-RDIMEMVA 336 (474)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pd--i~t~--sK~l~~G~~iG~~~~~-~~i~~~~~ 336 (474)
+|.++|++||++||+||+|+.+ .... ..++..+| +.+| +|.+++| ++|+++++ +++++.+.
T Consensus 148 ~i~~~~~~~~~~li~D~a~~~~~~~~~----~~~~~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~ 214 (418)
T 2c81_A 148 EINEIAQEHNLFVIEDCAQSHGSVWNN----QRAGTIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQ 214 (418)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCEETT----EETTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEECcccccCccCC----EecccccceEEEeccCCcccCCC-CeEEEEECCHHHHHHHH
Confidence 9999999999999999999765 2211 11222234 4466 9999987 99999984 77766654
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-18 Score=179.78 Aligned_cols=311 Identities=14% Similarity=0.073 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh-------cCC----cEEEEEeCCCCCCchhHHHhcCCCC
Q 011959 139 LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-------TGR----ERIIKFEGCYHGHADPFLVKAGSGV 206 (474)
Q Consensus 139 ~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~-------~~~----~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (474)
+++.++.++++++++ +.+.++|++|||+|+..+++.+|.. .+. +..|+.....|.....++...|.+.
T Consensus 148 ~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~ 227 (515)
T 2jis_A 148 LMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGT 227 (515)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCC
Confidence 557788888999886 3568999999999999999988642 121 2144455555666655555544421
Q ss_pred ccCCCCCCCCCCCCCCCceEEccCC-----CHHHHHHHHhcC---CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Q 011959 207 ATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 278 (474)
Q Consensus 207 ~~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~ 278 (474)
. ++..+|.+ |+++|++.+++. +.++++|+++..++++|.+.| +++|.++|++
T Consensus 228 ~----------------~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~ 287 (515)
T 2jis_A 228 D----------------SVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQR 287 (515)
T ss_dssp G----------------GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHH
T ss_pred C----------------cEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHH
Confidence 0 12222221 799999998742 225788888888888999988 9999999999
Q ss_pred hCCEEEEeccccCc-ccCCCccccccCC-CCceeeh--hhhcCCCcceEEEEecHH--HHHhhcC-CCCcc---------
Q 011959 279 NGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTTL--GKIIGGGLPVGAYGGRRD--IMEMVAP-AGPMY--------- 342 (474)
Q Consensus 279 ~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~t~--sK~l~~G~~iG~~~~~~~--i~~~~~~-~~~~~--------- 342 (474)
||++||+|++|+++ .....+.....++ .+|++++ +|.+++++++|+++++++ +++.... .....
T Consensus 288 ~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 367 (515)
T 2jis_A 288 HGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDV 367 (515)
T ss_dssp HTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCG
T ss_pred cCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccc
Confidence 99999999999877 5433232223344 6788764 899987778999988766 6554211 00111
Q ss_pred --cccCC------CCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCc
Q 011959 343 --QAGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY 414 (474)
Q Consensus 343 --~~~t~------~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~ 414 (474)
..+++ ....+.+.++++++....-+++.++..++.+++.+.|++. ..+.+.. ......+.+.+......
T Consensus 368 ~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~-~g~~~~~--~~~~~~v~f~~~p~~~~ 444 (515)
T 2jis_A 368 ALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR-EGFELVM--EPEFVNVCFWFVPPSLR 444 (515)
T ss_dssp GGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TTEEESS--CCSSSEEEEEECCGGGT
T ss_pred cCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEeC--CCCeeEEEEEEeCcccc
Confidence 01111 1123444444544432111456667777777787777653 1111111 11223333333211000
Q ss_pred Ccccccccc-hH----HHHHHHHHHHHCCeEecc-----cCCcceEEecC---CcHHHHHHHHHHHHHHHhhC
Q 011959 415 NFEDAKKSE-TT----KFARFYRGMLEEGVYFAP-----SQFEAGFTSLA---HSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 415 ~~~~~~~~~-~~----~~~~~~~~l~~~Gv~v~~-----~~~~~~~~~~~---~t~e~i~~~l~~l~~~~~~~ 474 (474)
.... ..+ .. ....+.+.|.++|+++.. .....+|+++. .|++||++++++|+++++++
T Consensus 445 ~~~~--~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~~ 515 (515)
T 2jis_A 445 GKQE--SPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL 515 (515)
T ss_dssp TCTT--STTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred cccc--chhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 0000 000 01 122467788888975532 11235677653 79999999999999998764
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=179.74 Aligned_cols=315 Identities=13% Similarity=0.056 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHhhCC-C--CCeEEEeCCHHHHHHHHHHHhHhh-------cC----CcEEEEEeCCCCCCchhHHHhcCC
Q 011959 139 LLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAF-------TG----RERIIKFEGCYHGHADPFLVKAGS 204 (474)
Q Consensus 139 ~~~~~la~~l~~~~~-~--~~~v~~~~sGseA~~~al~~ar~~-------~~----~~~ii~~~~~yhg~~~~~~~~~g~ 204 (474)
.++.++.++++++++ . .+.++|++|||+|+..+++.+|.. .+ ++.+|+.....|.....++...|.
T Consensus 132 ~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~ 211 (504)
T 2okj_A 132 LMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGF 211 (504)
T ss_dssp HHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCC
Confidence 456778888888886 3 568999999999999999988642 23 132444455556555555544443
Q ss_pred CCccCCCCCCCCCCCCCCCceEEccCC-----CHHHHHHHHhcC---CCCeEEEEEccccCCCCcccCCHHHHHHHHHHH
Q 011959 205 GVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 205 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
+.. +++.+|.+ |+++|++.+++. +.++++|++...++++|.+.| +++|.++|
T Consensus 212 g~~----------------~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la 271 (504)
T 2okj_A 212 GTD----------------NVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADIC 271 (504)
T ss_dssp CGG----------------GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHH
T ss_pred Ccc----------------cEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHH
Confidence 210 12223322 899999998742 224788888888888999988 99999999
Q ss_pred HHhCCEEEEeccccCc-ccCCCccccccCC-CCceeeh--hhhcCCCcceEEEEecH-HHHHhh-cCCCCcc-cccC---
Q 011959 277 KENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTTL--GKIIGGGLPVGAYGGRR-DIMEMV-APAGPMY-QAGT--- 346 (474)
Q Consensus 277 ~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~t~--sK~l~~G~~iG~~~~~~-~i~~~~-~~~~~~~-~~~t--- 346 (474)
++||++|++|++|.++ .....+.....|+ .+|++++ +|.+++++++|++++++ ++++.. ....... ...+
T Consensus 272 ~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (504)
T 2okj_A 272 EKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYD 351 (504)
T ss_dssp HHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSC
T ss_pred HHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCccccc
Confidence 9999999999999877 4322221222333 5688765 69998778899998876 465542 2111111 1111
Q ss_pred -------------CCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCC
Q 011959 347 -------------LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 413 (474)
Q Consensus 347 -------------~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~ 413 (474)
...+.+.+.++++++..-.-++..++..++.+++.+.|++. ..+.+.........++.+.+.....
T Consensus 352 ~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~-~~~~~~~~~~p~~~~v~f~~~~~~~ 430 (504)
T 2okj_A 352 VSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSL 430 (504)
T ss_dssp GGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-TTEEESSSSCCSSSCEEEEECCGGG
T ss_pred CcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEecCCCCeEEEEEEEeCccc
Confidence 01245666666666542111345566666677777766542 1111110001334444444422110
Q ss_pred cCcccc---cccchHHHHHHHHHHHHCCeE-eccc---CC-cceEEecC---CcHHHHHHHHHHHHHHHhhC
Q 011959 414 YNFEDA---KKSETTKFARFYRGMLEEGVY-FAPS---QF-EAGFTSLA---HSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 414 ~~~~~~---~~~~~~~~~~~~~~l~~~Gv~-v~~~---~~-~~~~~~~~---~t~e~i~~~l~~l~~~~~~~ 474 (474)
...... ..........+.+.|.++|++ +.+. +. ..+|+++. +|++||++++++|+++++++
T Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 431 RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp SSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 000000 000011235688888999954 4322 21 35677654 79999999999999988653
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=178.63 Aligned_cols=308 Identities=9% Similarity=-0.017 Sum_probs=184.6
Q ss_pred CCCHHHHHHHHHHHHhc----C-CCC----C--CCHHHHHHHHHHHhhCCC--CCeEEEeCCH-HHHHHHHHHHhHhhcC
Q 011959 115 HADDQVLAALGETMKKG----T-SFG----A--PCLLENVLAEMVISAVPS--IEMVRFVNSG-TEACMGVLRLARAFTG 180 (474)
Q Consensus 115 ~~~p~v~~a~~~~~~~~----~-~~~----~--~~~~~~~la~~l~~~~~~--~~~v~~~~sG-seA~~~al~~ar~~~~ 180 (474)
..+|.|++++.+.+++. . .++ + ..+...++.++++++++. .+++++++|+ ++|++.++.......+
T Consensus 13 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~ 92 (360)
T 1w23_A 13 ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGT 92 (360)
T ss_dssp CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTC
T ss_pred CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCC
Confidence 36899999999887542 0 010 1 123467888999888862 3589999988 9999999873211112
Q ss_pred CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHH-HHhcCCCCeEEEEEccccCCC
Q 011959 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENNKGEIAAIILEPVVGNS 259 (474)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~-~l~~~~~~~a~vi~ep~~~~~ 259 (474)
+.++|+.....|.. .......| .+..++.....+ +.|+++|++ .++ +++++|++++++|++
T Consensus 93 ~g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~~~~~-------------~~d~~~l~~~~i~---~~~k~v~~~~~~npt 154 (360)
T 1w23_A 93 IGNYVLTGSWSEKA-LKEAKLLG-ETHIAASTKANS-------------YQSIPDFSEFQLN---ENDAYLHITSNNTIY 154 (360)
T ss_dssp EEEEEECSHHHHHH-HHHHHTTS-EEEEEEECGGGT-------------SCSCCCGGGCCCC---TTEEEEEEESEETTT
T ss_pred cccEEEecchhHHH-HHHHHHhC-CeEEeecccccC-------------cCCccchHhhccC---CCCCEEEEeCCCCCc
Confidence 23344433222221 11122223 222111100000 125666766 553 368889888888899
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhc
Q 011959 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVA 336 (474)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~ 336 (474)
|.+.+ + + +++||++||+||+|..+ ..- ....+ |++ +++|.++.+ ++||+++++++++.+.
T Consensus 155 G~~~~--~-i------~~~~~~~li~D~a~~~~~~~~---~~~~~----di~~~s~sK~~~~~-G~G~~~~~~~~~~~~~ 217 (360)
T 1w23_A 155 GTQYQ--N-F------PEINHAPLIADMSSDILSRPL---KVNQF----GMIYAGAQKNLGPS-GVTVVIVKKDLLNTKV 217 (360)
T ss_dssp TEECS--S-C------CCCCSSCEEEECTTTTTSSCC---CGGGC----SEEEEETTTTTSCT-TCEEEEEEHHHHCSCC
T ss_pred ceecc--c-c------cccCCceEEEechhhcCCCCc---CcccC----CEEEEEcccccCCC-CcEEEEEcHHHHhhcc
Confidence 99875 2 2 23899999999999754 221 11111 555 678999831 3999999999887665
Q ss_pred CCCCcc--------cccCC-CCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCeeEE--e-ee
Q 011959 337 PAGPMY--------QAGTL-SGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAICG--G-YI 400 (474)
Q Consensus 337 ~~~~~~--------~~~t~-~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v--~-~~ 400 (474)
+..... ...++ +.+..++.++.++++.+.+. ...++++++.+++.+.|+++. ++.... + ..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~ 294 (360)
T 1w23_A 218 EQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESN---GFYVGHAEKGSR 294 (360)
T ss_dssp TTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTT---TSSEESSCGGGB
T ss_pred cCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcc---CcccccCCchhc
Confidence 321111 11222 34566667777788766432 345566666666666665431 121111 2 12
Q ss_pred -ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEEecC--CcHHHHHHHHHHHHHHHhh
Q 011959 401 -SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 401 -g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~~~~--~t~e~i~~~l~~l~~~~~~ 473 (474)
+.++++.+.. .....++.+.|.++||.+.++. ...+|+++. .+++++++++++|++++++
T Consensus 295 ~~~~~~~~~~~-------------~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 295 SLMNVTFNLRN-------------EELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp CSSEEEEECSS-------------HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEEcCC-------------CccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 3466766521 1234567888899999998763 246788765 6999999999999998865
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=184.51 Aligned_cols=287 Identities=11% Similarity=-0.013 Sum_probs=173.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
+.....++.+++++ ++..+.++++||+++|+..+++.+ ..++++|++..++|++... .+...|..+..++......
T Consensus 55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~--~~~gd~Vlv~~~~h~s~~~-~~~~~G~~~~~v~~~~~~~ 130 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSF--SQKKGDILMARNVHKSVLH-ALDISQQEGHFIETHQSPL 130 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTT--TTSSSCEEECTTCCHHHHH-HHHHHTCCEEECEEEECTT
T ss_pred cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHh--cCCCCEEEEecCccHHHHH-HHHHcCCeEEEEeCeeccc
Confidence 34455667777777 643367899999999999999952 3456778777777766444 4444554332211100000
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g 295 (474)
. .....+ |+++| +. +++++|++++ ++++|.+.+ +++|.++|++||++||+||+|++. +.+
T Consensus 131 ~-----~~~~~~---d~~~l---~~---~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~ 191 (446)
T 2x3l_A 131 T-----NHYNKV---NLSRL---NN---DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQ 191 (446)
T ss_dssp T-----SSEEEE---EC-------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTST
T ss_pred c-----CcCCCC---CHHHH---cC---CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccC
Confidence 0 000111 34444 22 2567777777 556899988 999999999999999999999763 222
Q ss_pred C-CccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHH--hhcCCCCcccccCCCCChHHHHHHHHHHHHhcCC--C
Q 011959 296 Y-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME--MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP--G 368 (474)
Q Consensus 296 ~-~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~--~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~--~ 368 (474)
. ......+ .+|++ +++|.++++.++|++++++++++ .+.. ......+.+.+...+++..++++.+++. +
T Consensus 192 ~~~~~~~~~--g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~--~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~ 267 (446)
T 2x3l_A 192 GFPDSTLNY--QADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIE--YLSYFQTSSPSYLIMASLESAAQFYKTYDST 267 (446)
T ss_dssp TSCCCGGGG--TCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHH--HHHHHSCSSCCHHHHHHHHHHHHHHHHCCCH
T ss_pred CCCCChHHc--CCCEEEECCccccccccccEEEEEcCCcCCHHHHHH--HHHHHcCCCchHHHHHHHHHHHHHHHHhCHH
Confidence 2 2222223 36776 46698887677999999887654 2221 1112234455666666666677766542 2
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc
Q 011959 369 -TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (474)
Q Consensus 369 -~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 447 (474)
+.++.+++.+++++. ++.......+..+++.+.. ....++.+.|.++||.+...+..
T Consensus 268 ~~~~~~~~l~~~l~~~--------g~~~~~~~~~~~l~i~~~~--------------~~~~~l~~~L~~~GI~v~~~g~~ 325 (446)
T 2x3l_A 268 LFFAKRAQLIECLENK--------GFEMLQVDDPLKLLIKYEG--------------FTGHDIQNWFMNAHIYLELADDY 325 (446)
T ss_dssp HHHHHHHHHHHHHHHH--------TCEEEECSSTTEEEEECTT--------------SCHHHHHHHHHHTTEEESEECSS
T ss_pred HHHHHHHHHHHHHHHc--------CCEECcCCCCeEEEEEeCC--------------cCHHHHHHHHHHCCCEEEecCCC
Confidence 566666666666554 2221111123344554421 01256788899999999844445
Q ss_pred ceEEecC--CcHHHHHHHHHHHHHHHhh
Q 011959 448 AGFTSLA--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 448 ~~~~~~~--~t~e~i~~~l~~l~~~~~~ 473 (474)
.+|+++. .|++++ +++++|++++++
T Consensus 326 ~iRi~~~~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 326 QALAILPLWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp CEEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred EEEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence 6777654 599999 999999998764
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.7e-19 Score=178.10 Aligned_cols=296 Identities=13% Similarity=0.046 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeCCHH-HHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCC
Q 011959 139 LLENVLAEMVISAVPSIEMVRFVNSGT-EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (474)
Q Consensus 139 ~~~~~la~~l~~~~~~~~~v~~~~sGs-eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~ 217 (474)
+.+.++.++++++++....++|++||+ .++..++..++...+++.||+.++ .|......+...|..+..++.....
T Consensus 133 ~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~-~h~s~~~~~~~~G~~~~~v~~~~~~-- 209 (456)
T 2z67_A 133 ALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYA-SHKSPIKAVSFVGMNMRLVETVLDG-- 209 (456)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHTTCEEEEECCEEET--
T ss_pred HHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECC-CcHHHHHHHHHcCCCceEEEEeccC--
Confidence 456778899999886222399999999 567767776544334555666666 5554555555555433221110000
Q ss_pred CCCCCCceEEccCCCHHHHHHHH-hcC-CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 218 PKGATYETLTAPFNDVSALENLF-ENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l-~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
+... .|+++|++.+ +.. .+++.+|++...++++|.+.| +++|.++|++||+++|+||+|.++-.|
T Consensus 210 ------~~~~---~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~~g 276 (456)
T 2z67_A 210 ------DRVY---VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNY 276 (456)
T ss_dssp ------TEEE---CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHH
T ss_pred ------CCCC---cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHHHH
Confidence 0111 2899999999 420 125666766666677899988 999999999999999999999755211
Q ss_pred C-CccccccCCCCcee--ehhhhcCCCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CC
Q 011959 296 Y-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PG 368 (474)
Q Consensus 296 ~-~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~ 368 (474)
. ......+...+|++ +++|.+++++++|++++ ++++++.+.+ .+.+.. ++++ ..++.+++..+.. ++
T Consensus 277 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~---~~~g~~-~~~~--~~~~~aal~~l~~~~~~~ 350 (456)
T 2z67_A 277 YLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL---SYPGRA-SATP--VVNTLVSLLSMGSKNYLE 350 (456)
T ss_dssp HHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHT---TSCSCB-CSHH--HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCc---CCCCCC-CCCH--HHHHHHHHHHHHHHHHHH
Confidence 1 11111111156766 56898887889999998 5778877752 222221 2222 2233334443322 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCe---Eec---
Q 011959 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV---YFA--- 442 (474)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv---~v~--- 442 (474)
..++..++.+++.+.|+++....+... .... .++.+.+..+. . ..++.+.|.++|+ -+.
T Consensus 351 ~~~~~~~~~~~l~~~L~~~~~~~g~~v-~~~~-~~v~~~~~~~~-----------~--~~~l~~~L~~~gi~~~rv~~~~ 415 (456)
T 2z67_A 351 LVKNQKNSKKLLDELLNDLSKKTGGKF-LDVE-SPIASCISVNS-----------D--PVEIAAKLYNLRVTGPRGIKKT 415 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCB-CCCC-CSSEEEEECSS-----------C--HHHHHHHHHHTTEESCEEECTT
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCEe-cCCC-CeEEEEEeccc-----------H--HHHHHHHHHHcCCCcceEEeec
Confidence 677888888888888887632222211 1112 44455542111 0 2467888888885 232
Q ss_pred ---------ccCCcceEEec--CCcHHHHHHHHHHHHHHH
Q 011959 443 ---------PSQFEAGFTSL--AHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 443 ---------~~~~~~~~~~~--~~t~e~i~~~l~~l~~~~ 471 (474)
......+++++ ..|++++|+++++|++++
T Consensus 416 g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 416 DHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred CccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 11123456653 469999999999998765
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=174.05 Aligned_cols=282 Identities=16% Similarity=0.122 Sum_probs=179.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhH---HHhcCCCCccCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLP 212 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~ 212 (474)
+.++...+|.+++++++ +.+..++++||++|+..+++.. ...++.||+.++.|++..... +...|
T Consensus 79 ~~~p~~~~le~~lA~l~-g~~~~v~~~sG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G--------- 146 (430)
T 3ri6_A 79 SSNPTVEDLEQRLKNLT-GALGVLALGSGMAAISTAILTL--ARAGDSVVTTDRLFGHTLSLFQKTLPSFG--------- 146 (430)
T ss_dssp -CCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHTHHHHTT---------
T ss_pred CCCHHHHHHHHHHHHHH-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHHHHcC---------
Confidence 45677889999999888 4566888899999999999842 445678888888887754322 11112
Q ss_pred CCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011959 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (474)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (474)
.++..++.+|+++|++.++. ++++|++|+++|++|.+.+ +++|.++|++||++||+||+|..
T Consensus 147 ----------~~~~~v~~~d~~~l~~ai~~---~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~~- 208 (430)
T 3ri6_A 147 ----------IEVRFVDVMDSLAVEHACDE---TTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMTP- 208 (430)
T ss_dssp ----------CEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTSC-
T ss_pred ----------CEEEEeCCCCHHHHHHhhCC---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc-
Confidence 24666777799999999863 6899999999999999998 99999999999999999999952
Q ss_pred ccCCCccccccCCCCceeehhhhcCC-CcceEEEEe---cHHH------------------HHhhcCCCCcccccCCCCC
Q 011959 293 RLAYGGAQEYFGVTPDLTTLGKIIGG-GLPVGAYGG---RRDI------------------MEMVAPAGPMYQAGTLSGN 350 (474)
Q Consensus 293 r~g~~~~~~~~g~~pdi~t~sK~l~~-G~~iG~~~~---~~~i------------------~~~~~~~~~~~~~~t~~~~ 350 (474)
+.......+|.+..+.+++|.+++ |..+|+++. +..+ ++.++. ..........+
T Consensus 209 --~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~--~~~~~~g~~~~ 284 (430)
T 3ri6_A 209 --PYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARK--EVFQNLGPSLS 284 (430)
T ss_dssp --TTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHH--THHHHHCCCCC
T ss_pred --cccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHH--HHHHhcCCCCC
Confidence 212222344554445579999986 555555543 2111 122210 01011122346
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-----------------eece-eEEEEEecCC
Q 011959 351 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-----------------YISG-MFGFFFTEGP 412 (474)
Q Consensus 351 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-----------------~~g~-~~~i~~~~~~ 412 (474)
|+.+..++..++.+. ...++..++...+.+.|++ ++.+..+. +.|. |++|++.+
T Consensus 285 ~~~a~l~l~~l~~l~--~r~~~~~~na~~la~~L~~----~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~-- 356 (430)
T 3ri6_A 285 PHNAYLQSLGLETMA--LRIERSCQNAQELAHWLLS----IPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES-- 356 (430)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT----CTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS--
T ss_pred HHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHhC----CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC--
Confidence 777766666666542 3445556666666666643 34333332 3366 99998852
Q ss_pred CcCcccccccchHHHHHHHHHHHHCCeEecccCCc---------------------------ceEEecCCcHHHHHHHHH
Q 011959 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE---------------------------AGFTSLAHSSDDIQHTIT 465 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------------------~~~~~~~~t~e~i~~~l~ 465 (474)
.+...+|.+.+...++.+..++.. .+|++ +..|+.+.+++
T Consensus 357 -----------~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRls--vG~E~~~dl~~ 423 (430)
T 3ri6_A 357 -----------KEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLS--VGIEEIEDLKE 423 (430)
T ss_dssp -----------HHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEE--CCSSCHHHHHH
T ss_pred -----------HHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEE--eccCCHHHHHH
Confidence 233455666555444444333211 13444 34567778888
Q ss_pred HHHHHHh
Q 011959 466 AAEKVLR 472 (474)
Q Consensus 466 ~l~~~~~ 472 (474)
.|+++++
T Consensus 424 dl~~al~ 430 (430)
T 3ri6_A 424 DILQALC 430 (430)
T ss_dssp HHHHHHC
T ss_pred HHHHhhC
Confidence 8887763
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-18 Score=174.25 Aligned_cols=287 Identities=14% Similarity=0.066 Sum_probs=180.9
Q ss_pred CCHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHhHhhcCCcEEEE
Q 011959 116 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 186 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~------~~~~~~~~~~~~~la~~l~~~~~~~~~v~~---~~sGseA~~~al~~ar~~~~~~~ii~ 186 (474)
++++|++++.++... ...+.++...+.+++++++++++ .+...+ ++||++|++.+++. ....++.||+
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g-~~~~~~~i~~~sGt~Ai~~al~a--l~~~Gd~Vl~ 112 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFG-AEAGLVRPQIISGTHAISTALFG--ILRPGDELLY 112 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTT-CSEECCBTTSCSHHHHHHHHHHT--TCCTTCEEEE
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhC-CCcccccceeeCHHHHHHHHHHH--hCCCCCEEEE
Confidence 467888888775321 12345677888999999999984 444433 56899999999983 2334567777
Q ss_pred EeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-----CHHHHHHHHhcCCCCeEEEEEcc-ccCCCC
Q 011959 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENNKGEIAAIILEP-VVGNSG 260 (474)
Q Consensus 187 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~a~vi~ep-~~~~~G 260 (474)
.++..|+.+...+..+|.. .......+.++..++++ |+++|++.++. ++++|++++ .+|++|
T Consensus 113 ~~~~~y~~~~~~~~l~g~~---------~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~---~tk~V~i~~sp~np~~ 180 (431)
T 3ht4_A 113 ITGKPYDTLEEIVGVRGKG---------VGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS---NTKMIGIQRSKGYATR 180 (431)
T ss_dssp CSSSCCTTHHHHTTSSSCS---------SSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT---TEEEEEEECSCTTSSS
T ss_pred eCCCCchhHHHHHhhcccc---------cchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC---CCeEEEEECCCCCCCC
Confidence 7745555555444333220 01111222345555553 89999999863 689999995 444555
Q ss_pred cccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC--cceEEEEecHHHHHhh
Q 011959 261 FIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG--LPVGAYGGRRDIMEMV 335 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G--~~iG~~~~~~~i~~~~ 335 (474)
.... .+.+++|+++|++ ||++||+||+|.++ ...... .+|.+..+.+++|.++|| .+.|++++++++++.+
T Consensus 181 ~~~~-~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l 256 (431)
T 3ht4_A 181 PSFT-ISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEAC 256 (431)
T ss_dssp CCCC-HHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHH
T ss_pred CcCC-HHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHH
Confidence 5444 3449999999999 99999999999866 433221 234433344799999864 5679999999998887
Q ss_pred cCCC-CcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc-CCeeEEeeeceeEEEEEecCCC
Q 011959 336 APAG-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPV 413 (474)
Q Consensus 336 ~~~~-~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~v~~~g~~~~i~~~~~~~ 413 (474)
.... ....+.+.+.++..+.+++..++.+ +...++..++.+++.+.|+++..+. +. ...++.+.++.+.+.
T Consensus 257 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~~~~li~~i~l~---- 329 (431)
T 3ht4_A 257 AYRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAPRTDLIQSVQFD---- 329 (431)
T ss_dssp HHHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSCCSSSCCEEECC----
T ss_pred HHHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCCCccEEEEEEeC----
Confidence 5310 1111222233222234455555543 4567788888999999998874322 11 112344556777663
Q ss_pred cCcccccccchHHHHHHHHHHHHC
Q 011959 414 YNFEDAKKSETTKFARFYRGMLEE 437 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~ 437 (474)
+.+...++++.|.+.
T Consensus 330 ---------~~~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 330 ---------DKDRMIAFCQAIQYA 344 (431)
T ss_dssp ---------CHHHHHHHHHHHHHT
T ss_pred ---------CHHHHHHHHHHHHhc
Confidence 234567888888876
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=171.58 Aligned_cols=303 Identities=11% Similarity=0.005 Sum_probs=185.9
Q ss_pred CCHHHHHHHHHHHHhcC---------CCCCC--CHHHHHHHHHHHhhCCC-CC-e-EEEeCCHHHHHHHHHHHhHhhcCC
Q 011959 116 ADDQVLAALGETMKKGT---------SFGAP--CLLENVLAEMVISAVPS-IE-M-VRFVNSGTEACMGVLRLARAFTGR 181 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~---------~~~~~--~~~~~~la~~l~~~~~~-~~-~-v~~~~sGseA~~~al~~ar~~~~~ 181 (474)
.+|+|++++.+.+.+.. .+.++ .+...+++++++++++- .+ + +++++||++|+..+++.. ...+
T Consensus 15 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l--~~~g 92 (362)
T 2c0r_A 15 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF--LKEG 92 (362)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH--CCTT
T ss_pred CCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhc--CCCC
Confidence 68999999998875420 11111 23567899999998863 32 5 467799999999999842 3445
Q ss_pred cEEEEEeCCCCCCch-hHHHhcCCCCccCCCCC--CCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCC
Q 011959 182 ERIIKFEGCYHGHAD-PFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (474)
Q Consensus 182 ~~ii~~~~~yhg~~~-~~~~~~g~~~~~~~~~~--~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (474)
++|++.+.++++... ..+...| .+..++... ..+.. .|.++++ ++ +++++|++.+++|+
T Consensus 93 d~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~------------~~~~~~~--i~---~~t~~v~~~~~~n~ 154 (362)
T 2c0r_A 93 QTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTL------------PKLQEIQ--LQ---DNAAYLHLTSNETI 154 (362)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSC------------CCGGGCC--CC---TTEEEEEEESEETT
T ss_pred CeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccC------------CCHHHcc--cC---CCcCEEEEeCCcCc
Confidence 778887776655321 2223334 332221110 01100 0333332 32 36888888877888
Q ss_pred CCcc-cCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcC-CCcceEEEEecHHHHHh
Q 011959 259 SGFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPVGAYGGRRDIMEM 334 (474)
Q Consensus 259 ~G~i-~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~-~G~~iG~~~~~~~i~~~ 334 (474)
+|.+ .+ +++| ||+++|+||+|.-+.. ..... .. |++ +++|.+| .| +||+++++++++.
T Consensus 155 tG~~~~~----l~~i------~~~~vivD~a~~~~~~--~~~~~--~~--d~~~~s~~K~~g~~G--~G~l~~~~~~~~~ 216 (362)
T 2c0r_A 155 EGAQFKA----FPDT------GSVPLIGDMSSDILSR--PFDLN--QF--GLVYAGAQKNLGPSG--VTVVIVREDLVAE 216 (362)
T ss_dssp TTEECSS----CCCC------TTSCEEEECTTTTTSS--CCCGG--GC--SEEEEETTTTTCCSS--CEEEEEEGGGSSS
T ss_pred cceeccc----cccc------CCCEEEEEChhhccCC--ccchh--HC--cEEEEeccccccCcC--cEEEEEcHHHHhh
Confidence 9985 44 4444 8999999999963211 11111 12 554 7899998 35 8999999998776
Q ss_pred hcCCCCccc---------ccCCCCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcC-C-eeEE--
Q 011959 335 VAPAGPMYQ---------AGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAG-H-AICG-- 397 (474)
Q Consensus 335 ~~~~~~~~~---------~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~-~-~~~v-- 397 (474)
+.+..+.+. ...++.|+.++.++.++|+.+.+ +...++++++++++++.|+++ + + ....
T Consensus 217 l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~ 292 (362)
T 2c0r_A 217 SPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQS----GGFYRGCVDV 292 (362)
T ss_dssp CCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTS----TTSSEESSCG
T ss_pred ccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCh
Confidence 653111111 22346678888888899987654 344555666666666666543 3 2 1100
Q ss_pred -eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEEecC--CcHHHHHHHHHHHHHHHh
Q 011959 398 -GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSLA--HSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 398 -~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~~~~--~t~e~i~~~l~~l~~~~~ 472 (474)
...+.++++.+. +.....++.+.|.++||.+.++. ...+|+++. +++++++++++.|+++++
T Consensus 293 ~~~~~~~~~~~~~-------------~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~ 359 (362)
T 2c0r_A 293 DSRSDMNITFRLA-------------SEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKR 359 (362)
T ss_dssp GGBCSSEEEEECS-------------CHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCcEEEEEcC-------------CcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 112334444432 12234678888999999887653 235788764 489999999999999876
Q ss_pred h
Q 011959 473 Q 473 (474)
Q Consensus 473 ~ 473 (474)
+
T Consensus 360 ~ 360 (362)
T 2c0r_A 360 S 360 (362)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=169.69 Aligned_cols=321 Identities=12% Similarity=0.012 Sum_probs=191.3
Q ss_pred CCHHHHHHHHHHHHhcC-CCC-C--CCHHHHHHHHHHHhhCC-CCC-----eEEEeCCHHHHHHHHHHHhHhh-------
Q 011959 116 ADDQVLAALGETMKKGT-SFG-A--PCLLENVLAEMVISAVP-SIE-----MVRFVNSGTEACMGVLRLARAF------- 178 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~-~~~-~--~~~~~~~la~~l~~~~~-~~~-----~v~~~~sGseA~~~al~~ar~~------- 178 (474)
.+|.+.+++.+.+.... .+. + ..+++.++.++++++++ ..+ .+++++||++|+..+++.++..
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999888776421 121 1 23567888999999886 333 4899999999999999876431
Q ss_pred cC----CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011959 179 TG----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (474)
Q Consensus 179 ~~----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (474)
.| +++||+.+ .|.....++...|..+..++.....+. -|+++|++.+++ ++++|++..
T Consensus 134 ~G~~~~~~~vi~~~--~h~~~~~~~~~~G~~v~~v~~~~~~~~-------------~d~~~l~~~i~~---~t~~v~~~~ 195 (452)
T 2dgk_A 134 AGKPTDKPNLVCGP--VQICWHKFARYWDVELREIPMRPGQLF-------------MDPKRMIEACDE---NTIGVVPTF 195 (452)
T ss_dssp TTCCCSCCEEEESS--CCHHHHHHHHHTTCEEEECCCBTTBCS-------------CCHHHHHHHCCT---TEEEEECBB
T ss_pred cCCCCCCcEEEECC--CcHHHHHHHHHcCceEEEEecCCCCCe-------------ECHHHHHHHHhh---CCEEEEEEc
Confidence 23 34666655 666555555555554333222110010 189999999874 578888887
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHHh------CCEEEEeccccCc-c--cCCCccccccCC-CCceee--hhhhcCCCcce
Q 011959 255 VVGNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R--LAYGGAQEYFGV-TPDLTT--LGKIIGGGLPV 322 (474)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~-r--~g~~~~~~~~g~-~pdi~t--~sK~l~~G~~i 322 (474)
.++++|.+.+ +++|.++|++| |++|++|++|.++ . ........ +.. ..|+++ ..|.+.+|+++
T Consensus 196 ~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~hK~~~~~~~~ 270 (452)
T 2dgk_A 196 GVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD-FRLPRVKSISASGHKFGLAPLGC 270 (452)
T ss_dssp SCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS-TTSTTEEEEEEETTTTTCCCSSC
T ss_pred CCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhh-cCCCCCcEEEECcccccCCCCCe
Confidence 7788999988 99999999996 9999999999875 3 11111111 111 246554 56966678999
Q ss_pred EEEEecHH-HH-HhhcCCCCccccc---C--C--CCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 323 GAYGGRRD-IM-EMVAPAGPMYQAG---T--L--SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 323 G~~~~~~~-i~-~~~~~~~~~~~~~---t--~--~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
|+++++++ ++ +.+... +.+..+ + . +.+.....+..++++.+.. ++..++..++.+++.+.|+++
T Consensus 271 G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~--- 346 (452)
T 2dgk_A 271 GWVIWRDEEALPQELVFN-VDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL--- 346 (452)
T ss_dssp EEEEESSGGGSCGGGCEE-ECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred EEEEEcCHHHHHHHhccC-ccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 99988643 33 443210 111110 0 1 1111122233334443322 344556666666666666543
Q ss_pred cC-CeeEEe----eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecc----cC---CcceEEec--CCc
Q 011959 391 AG-HAICGG----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP----SQ---FEAGFTSL--AHS 456 (474)
Q Consensus 391 ~~-~~~~v~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~~---~~~~~~~~--~~t 456 (474)
+ +....+ ....++.+.+...... .....++.+.|.++|+.+.. .. ...+|+++ ..|
T Consensus 347 -~~~~~~~~~~~~~~~~~v~f~~~~~~~~---------~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t 416 (452)
T 2dgk_A 347 -GPYEFICTGRPDEGIPAVCFKLKDGEDP---------GYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFE 416 (452)
T ss_dssp -SSEEEEEECCTTTBSSEEEEEECTTCCC---------SCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCC
T ss_pred -CCeEEecCCCCCCCeEEEEEEecCcccc---------cCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCC
Confidence 3 222112 2445566655321100 00125688899999996542 21 22466653 458
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011959 457 SDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 457 ~e~i~~~l~~l~~~~~~ 473 (474)
+++++++++.|++++++
T Consensus 417 ~e~id~li~~l~~~~~~ 433 (452)
T 2dgk_A 417 MDFAELLLEDYKASLKY 433 (452)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988754
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-18 Score=175.97 Aligned_cols=312 Identities=18% Similarity=0.135 Sum_probs=185.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-------C----CHHHHHHHHHHHhhCC-CCC---eEEEeCCHHHHHHHHHHHhHhhcC
Q 011959 116 ADDQVLAALGETMKKGTSFGA-------P----CLLENVLAEMVISAVP-SIE---MVRFVNSGTEACMGVLRLARAFTG 180 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~-------~----~~~~~~la~~l~~~~~-~~~---~v~~~~sGseA~~~al~~ar~~~~ 180 (474)
.+|.|++|+.+.+.+....++ . .+++..+.++++++++ ..+ ..++.+||++|+..+++. ...+
T Consensus 56 ~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~a--ll~p 133 (483)
T 1rv3_A 56 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTA--LVEP 133 (483)
T ss_dssp CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH--HTCT
T ss_pred CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHH--hcCC
Confidence 589999999988865321011 1 2445667788999886 332 225556677999888874 2455
Q ss_pred CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCC--CceEEcc------CCCHHHHHHHHhcCCCCeEEEEE
Q 011959 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGAT--YETLTAP------FNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~--~~~~~~~------~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
+++|++.+..|.++.......... ++ ...+ ...+.++ .-|+++|++.+++. ++++|++
T Consensus 134 GD~Vl~~~~~~~~~~~~~~~~~~~-----------~v-~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~--~tklIi~ 199 (483)
T 1rv3_A 134 HGRIMGLDLPDGGHLTHGFMTDKK-----------KI-SATSIFFESMAYKVNPDTGYIDYDRLEENARLF--HPKLIIA 199 (483)
T ss_dssp TCEEEEECGGGTCCGGGCCBCSSC-----------BC-SHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH--CCSEEEE
T ss_pred CCEEEEecCccCcCcchhhhhccc-----------Cc-ccccceEEEEECccccCCCcCCHHHHHHHHhhc--CCcEEEE
Confidence 678888887776643211000000 00 0000 0122221 12899999999742 4677888
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc-ccCCC-ccccccCCCCcee--ehhhhcCCCcceEEEEe
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYG-GAQEYFGVTPDLT--TLGKIIGGGLPVGAYGG 327 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-r~g~~-~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~ 327 (474)
...+++ .+.+ +++|+++|++||++||+||+|. |+ ..+.. .... ..|++ +++|+|+ |+|.|++++
T Consensus 200 -~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~s~~K~l~-GprgG~i~~ 268 (483)
T 1rv3_A 200 -GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTTHKTLR-GCRAGMIFY 268 (483)
T ss_dssp -CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEESSGGGC-CCSCEEEEE
T ss_pred -eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEecCcccCC-CCCceEEEE
Confidence 555555 6677 9999999999999999999984 55 33321 1111 24665 5779995 678899988
Q ss_pred cHH---------------HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhh
Q 011959 328 RRD---------------IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGK 389 (474)
Q Consensus 328 ~~~---------------i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~ 389 (474)
+++ +.+.+.. ..+.+...+.+...+++..++++.+.+ +++.+++.++.+++.+.|.+.
T Consensus 269 ~~~~~~~~~~~g~~~~y~~~~~~~~--~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 344 (483)
T 1rv3_A 269 RRGVRSVDPKTGKEILYNLESLINS--AVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-- 344 (483)
T ss_dssp ECSBCC-------CCBCCHHHHHHH--HHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred cchhhhhccccCcchhhHHHHHhhh--hcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc--
Confidence 874 3333321 001111122344455555667776653 456677777788888877764
Q ss_pred hcCCeeEEeee-ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEec----ccC-----CcceEEecCC--c-
Q 011959 390 KAGHAICGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PSQ-----FEAGFTSLAH--S- 456 (474)
Q Consensus 390 ~~~~~~~v~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~-----~~~~~~~~~~--t- 456 (474)
++.....+. ..++++.+.... .....+.+.|.+.||.+. |+. ...+|+++.. |
T Consensus 345 --g~~~~~~~~~~~~~~v~~~~~g------------~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~ 410 (483)
T 1rv3_A 345 --GYKIVTGGSDNHLILVDLRSKG------------TDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSR 410 (483)
T ss_dssp --TCEEGGGSCSSSEEEEEGGGGT------------CCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHT
T ss_pred --CCEeccCCCCCceEEEeccCCC------------CCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccC
Confidence 322111111 134455543210 012456777888999998 642 2356776432 5
Q ss_pred ---HHHHHHHHHHHHHHHh
Q 011959 457 ---SDDIQHTITAAEKVLR 472 (474)
Q Consensus 457 ---~e~i~~~l~~l~~~~~ 472 (474)
++|+++++++|+++++
T Consensus 411 g~~~edi~~~~~~l~~~l~ 429 (483)
T 1rv3_A 411 GLLEKDFQKVAHFIHRGIE 429 (483)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 8999999999998875
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-19 Score=178.17 Aligned_cols=320 Identities=10% Similarity=-0.043 Sum_probs=194.6
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH-hcC-C--CC----C---CCHHHHHHHHHHHhhCC---CCCeEEEe
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK-KGT-S--FG----A---PCLLENVLAEMVISAVP---SIEMVRFV 161 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~-~--~~----~---~~~~~~~la~~l~~~~~---~~~~v~~~ 161 (474)
...+..|||..+.. .++ .++.+.+++.+.+. .+. . |. + ..+++.++++++.+... ..++|+++
T Consensus 53 ~~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t 129 (427)
T 2hox_A 53 KIQGCSADVASGDG--LFL-EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFG 129 (427)
T ss_dssp ECTTCCEECCSCCC--GGG-HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEE
T ss_pred cCCCceEEecCcCC--CCC-CCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEe
Confidence 34556788877732 222 35677778777663 222 1 22 1 34567777777765432 46899999
Q ss_pred CCHHHHHHHHHHHhHh------hcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHH
Q 011959 162 NSGTEACMGVLRLARA------FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 235 (474)
Q Consensus 162 ~sGseA~~~al~~ar~------~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~ 235 (474)
+|+++|+..+++.... ...++.|++.+++|.++.. .+...|..+ +.+.. |+++
T Consensus 130 ~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~-~~~~~g~~~-------------------~~~~~-d~~~ 188 (427)
T 2hox_A 130 VGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE-QTKYFDKKG-------------------YVWAG-NAAN 188 (427)
T ss_dssp SHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH-HHHHSCBTT-------------------EEEEE-EGGG
T ss_pred CCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHH-HHHHcCCee-------------------eeecC-CHHH
Confidence 9999999999984200 2345678888888865433 333333311 11111 5677
Q ss_pred HHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhh
Q 011959 236 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKI 315 (474)
Q Consensus 236 le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~ 315 (474)
|++.++. ++++|++..++|++|.+.+ + .+ + ++..|.||.+.+ ......... .+...-+.+|||.
T Consensus 189 l~~~~~~---~~k~v~l~~p~NPtG~~~~-~-~l-------~--~~~~i~d~~~~~-~~~s~~~~~-~~~~i~~~S~SK~ 252 (427)
T 2hox_A 189 YVNVSNP---EQYIEMVTSPNNPEGLLRH-A-VI-------K--GCKSIYDMVYYW-PHYTPIKYK-ADEDILLFTMSKF 252 (427)
T ss_dssp GTTCSCG---GGEEEEEESSCTTTCCCCC-C-SS-------T--TCEEEEECTTCS-TTTSCCCSC-BCCSEEEEEHHHH
T ss_pred HHHhhcC---CceEEEEcCCCCCcccccH-H-HH-------c--CCCEEEeecccC-CCCCccccC-CCceEEEEeChhc
Confidence 7766642 4667777666788898887 3 12 2 566777877632 000011111 1211123389999
Q ss_pred cC-CCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc---------CCCH----HHHHHHHHHHH
Q 011959 316 IG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---------EPGT----YEYLNKITGEL 380 (474)
Q Consensus 316 l~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---------~~~~----~~~~~~~~~~l 380 (474)
++ .|+|+||+++ ++++++.+.. .....+++.+++++.++.++|+... -+++ +++++++.+++
T Consensus 253 ~g~~G~RiG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 329 (427)
T 2hox_A 253 TGHSGSRFGWALIKDESVYNNLLN---YMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329 (427)
T ss_dssp TSCGGGCCEEEEECCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEECCHHHHHHHHH---HHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 98 7999999999 5899888863 3333456788999998888887532 1333 34455555555
Q ss_pred HHHHHHH-hhhc---C-------CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC---
Q 011959 381 TQGIIDA-GKKA---G-------HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ--- 445 (474)
Q Consensus 381 ~~~L~~~-~~~~---~-------~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~--- 445 (474)
.+.|++. .... + +....+..|+++++.+..+ ..++++.|+ ++||.+.|+.
T Consensus 330 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~---------------~~~~~~~ll~~~gI~v~pg~~f~ 394 (427)
T 2hox_A 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE---------------EDKDCYQTFQNGRINTQNGVGFE 394 (427)
T ss_dssp HHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG---------------GGCSHHHHHHHTTEECEEGGGGT
T ss_pred HHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc---------------HHHHHHHHHHHCCEEEcCCCccC
Confidence 5555432 1010 0 0112333477778777421 024556665 7899998863
Q ss_pred --CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 446 --FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 --~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
...+|+++..+++++++++++|.+++++
T Consensus 395 ~~~~~~Ris~~~~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 395 ASSRYVRLSLIKTQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp SCTTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 3468999888999999999999998753
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=169.75 Aligned_cols=311 Identities=15% Similarity=0.076 Sum_probs=176.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-----------CCHHHHHHHHHHHhhCCC-CC---eEEEeCCHHHHHHHHHHHhHhhc-
Q 011959 116 ADDQVLAALGETMKKGTSFGA-----------PCLLENVLAEMVISAVPS-IE---MVRFVNSGTEACMGVLRLARAFT- 179 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~-----------~~~~~~~la~~l~~~~~~-~~---~v~~~~sGseA~~~al~~ar~~~- 179 (474)
.+|+|++|+...+.+....|+ ...++....++++++++. .+ ..++++||++||..+++ ++.
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~---al~~ 142 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYT---ALLQ 142 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHH---HHCC
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHH---HHcC
Confidence 489999999988754211111 134454555888888852 22 24566799999999998 444
Q ss_pred CCcEEEEEeCCCCCCch-h------HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE
Q 011959 180 GRERIIKFEGCYHGHAD-P------FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~~~-~------~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
.+++||+.+..|.|+.. + .+...|.......++..+. . -..|+++|++.++.+ ++++|++
T Consensus 143 pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~--------~---~~iD~d~le~~l~~~--~~klIi~ 209 (490)
T 2a7v_A 143 PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK--------T---GLIDYNQLALTARLF--RPRLIIA 209 (490)
T ss_dssp SCEECCC-------------------------------CCBCTT--------T---CSBCHHHHHHHHHHH--CCSEEEE
T ss_pred CCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccc--------c---CCcCHHHHHHHHhhc--CCcEEEE
Confidence 45667766665543221 1 1112222111111110000 0 022899999998743 3456666
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCC-ccccccCCCCcee--ehhhhcCCCcceEEEEe
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYG-GAQEYFGVTPDLT--TLGKIIGGGLPVGAYGG 327 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~-~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~ 327 (474)
+...+ |...+ +++|+++|++||++|++|++| .|+ ..|.. ...+ ..|++ |++|+|+ |++.|++++
T Consensus 210 ~~s~~--~~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDiv~~S~hK~l~-Gp~GG~i~~ 278 (490)
T 2a7v_A 210 GTSAY--ARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLR-GARSGLIFY 278 (490)
T ss_dssp CCSSC--CSCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSGGGC-SCSCEEEEE
T ss_pred cCCCC--CCccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCEEEECCcccCc-cccchheee
Confidence 54322 33455 999999999999999999998 465 43321 1111 24665 6899995 567899888
Q ss_pred cHH---------------HHHhhcCCCCcccccCCC-CChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHh
Q 011959 328 RRD---------------IMEMVAPAGPMYQAGTLS-GNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAG 388 (474)
Q Consensus 328 ~~~---------------i~~~~~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~ 388 (474)
+++ +.+.++. ..+. ++.+ .++..+++..++++.+.. +++.+++.++.++|.+.|.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~i~~--~~~~-g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~- 354 (490)
T 2a7v_A 279 RKGVKAVDPKTGREIPYTFEDRINF--AVFP-SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER- 354 (490)
T ss_dssp ECSEEEEETTTEEEEECCCHHHHHH--HHTT-TTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred ccchhcccccccchhhHHHHHHHHH--Hhcc-cCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-
Confidence 764 3344431 1111 1222 344445555556665543 456778888899999998874
Q ss_pred hhcCCeeEEee-eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc---------CCcceEEe------
Q 011959 389 KKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS---------QFEAGFTS------ 452 (474)
Q Consensus 389 ~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---------~~~~~~~~------ 452 (474)
++.....+ ...++++.+.... .....+.+.|.+.||.+... ....+|+.
T Consensus 355 ---G~~v~~~~t~t~lv~vdl~~~g------------~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~ 419 (490)
T 2a7v_A 355 ---GYSLVSGGTDNHLVLVDLRPKG------------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTS 419 (490)
T ss_dssp ---TCEEGGGSCSSSEEEEECTTTT------------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHH
T ss_pred ---CcEEecCCCCCeEEEEEeCCCC------------CCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEeccccccc
Confidence 22111111 2245555553211 01245777888899998742 12345662
Q ss_pred cCCcHHHHHHHHHHHHHHHh
Q 011959 453 LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~~ 472 (474)
..++++|++++++.|.++++
T Consensus 420 ~g~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 420 RQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 35789999999999998875
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=167.17 Aligned_cols=216 Identities=11% Similarity=0.015 Sum_probs=147.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
+.++...++.++++++.+ .+.+++++||++|+..+++. ....+++||+.++.|++..........
T Consensus 79 ~~~p~~~~le~~lA~l~g-~~~~i~~ssGt~Ai~~al~~--l~~~Gd~Vi~~~~~y~~~~~~~~~~l~------------ 143 (415)
T 2fq6_A 79 RGTLTHFSLQQAMCELEG-GAGCVLFPCGAAAVANSILA--FIEQGDHVLMTNTAYEPSQDFCSKILS------------ 143 (415)
T ss_dssp TCCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHT--TCCTTCEEEEETTSCHHHHHHHHHTGG------------
T ss_pred CCCchHHHHHHHHHHHhC-CCeEEEeCCHHHHHHHHHHH--HhCCCCEEEEeCCCchHHHHHHHHHHH------------
Confidence 356777888888888874 46788889999999999983 123467888888888774322211000
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCcc
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGFR 293 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~r 293 (474)
..+.++..++.+|+++|+++++. ++++|++|.++|++|.+.+ +++|.++|++ ||++||+||+|....
T Consensus 144 ----~~G~~v~~v~~~d~~~le~ai~~---~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a~~~ 212 (415)
T 2fq6_A 144 ----KLGVTTSWFDPLIGADIVKHLQP---NTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAAGV 212 (415)
T ss_dssp ----GGTCEEEEECTTCGGGGGGGCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTTTT
T ss_pred ----HcCcEEEEECCCCHHHHHHhhcc---CCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCcccc
Confidence 01123555667789999988863 6899999999999999998 9999999999 999999999995221
Q ss_pred cCCCccccccCCCCcee--ehhhhcCC-Cc-ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCH
Q 011959 294 LAYGGAQEYFGVTPDLT--TLGKIIGG-GL-PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (474)
Q Consensus 294 ~g~~~~~~~~g~~pdi~--t~sK~l~~-G~-~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (474)
.... +....|++ +++|.+++ |. .+|++++++++++.+.... ...++ ..++..+..++..++.+ +..
T Consensus 213 ~~~p-----~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~--~~~G~-~~~~~~a~~~~~~l~~l--~~r 282 (415)
T 2fq6_A 213 LFKA-----LDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA--YLMGQ-MVDADTAYITSRGLRTL--GVR 282 (415)
T ss_dssp SSCG-----GGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH--HHTTC-CCCHHHHHHHHHHHHHH--HHH
T ss_pred cCCc-----cccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH--HhcCC-CCCHHHHHHHHhhhhHH--HHH
Confidence 1111 12235666 78999995 44 4799999888877765211 11122 34666666666666644 234
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011959 370 YEYLNKITGELTQGIIDA 387 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~ 387 (474)
.++..++...+.+.|++.
T Consensus 283 ~~~~~~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 283 LRQHHESSLKVAEWLAEH 300 (415)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 455566667777766653
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-17 Score=161.24 Aligned_cols=313 Identities=12% Similarity=0.072 Sum_probs=189.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCC
Q 011959 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMV-ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l-~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~ 194 (474)
.+|++++++.+.++.+. ++.......+|.+.+ +++++..+.+++++||++|+..+++.. ....++.||+..+.|.+.
T Consensus 14 ~~~~i~~a~~~~~~~~~-~~~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l-~~~~Gd~Vi~~~~~~~~~ 91 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHI-YTNYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLK-KRKKGKYALMPSFTFPAT 91 (377)
T ss_dssp CGGGGHHHHHHHHHHTC-CSSSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHH-SCTTCCEEEEESSSCTHH
T ss_pred CcHHHHHHHHHHHHcCC-cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHH
Confidence 46789999999998764 322245667888888 888842678999999999999999842 134567888888888764
Q ss_pred chhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHH
Q 011959 195 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (474)
Q Consensus 195 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (474)
...+...|..+..++.....+ .-|++++++.+.....++++|+. .+++|...+ +++|.+
T Consensus 92 -~~~~~~~G~~~~~v~~~~~~~-------------~~d~~~l~~~i~~~~~~tk~v~~---~~~~G~~~~----~~~i~~ 150 (377)
T 3ju7_A 92 -PLAAIWCGLEPYFIDISIDDW-------------YMDKTVLWDKIEELKEEVAIVVP---YATFGSWMN----LEEYEE 150 (377)
T ss_dssp -HHHHHHTTCEEEEECBCTTTC-------------SBCHHHHHHHHHHHGGGEEEECC---BCGGGBCCC----CHHHHH
T ss_pred -HHHHHHcCCEEEEEecCCccC-------------CcCHHHHHHHHhcCCCCceEEEE---ECCCCCccC----HHHHHH
Confidence 334444444322211110000 01899999988321112777763 234677777 888999
Q ss_pred HHHHhCCEEEEecccc-CcccCCCcccccc-CCCCceeeh----hhhcCCCcceEEEEe-cHHHHHhhcCCCC-------
Q 011959 275 ITKENGALLIFDEVMT-GFRLAYGGAQEYF-GVTPDLTTL----GKIIGGGLPVGAYGG-RRDIMEMVAPAGP------- 340 (474)
Q Consensus 275 l~~~~g~llI~DEv~~-g~r~g~~~~~~~~-g~~pdi~t~----sK~l~~G~~iG~~~~-~~~i~~~~~~~~~------- 340 (474)
+|+ ||++||+|++|+ |... ..... +...|+.++ +|.+++| ..|+++. ++++.+.++....
T Consensus 151 la~-~~~~vi~D~a~a~g~~~----~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~ 224 (377)
T 3ju7_A 151 LEK-KGVPVVVDAAPGFGLMN----GGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRMGNFGFDTNR 224 (377)
T ss_dssp HHH-TTCCBEEECTTCTTCEE----TTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHTBTTBCTTS
T ss_pred HHh-cCCEEEEECCCccCCeE----CCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHHHhcCCCCCC
Confidence 999 999999999995 2211 11122 122355543 4999875 5677755 5666665542111
Q ss_pred --cccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh-cCCeeEE--eeeceeEEEEEecCCCcC
Q 011959 341 --MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGHAICG--GYISGMFGFFFTEGPVYN 415 (474)
Q Consensus 341 --~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~v--~~~g~~~~i~~~~~~~~~ 415 (474)
...+..+..+++.++.+++.++.+ +...++.+++.+++.+.|.++..- ....... ...-.++.+.+.+
T Consensus 225 ~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 297 (377)
T 3ju7_A 225 ECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPE----- 297 (377)
T ss_dssp CBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCT-----
T ss_pred ceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCC-----
Confidence 011224556778777777777644 456677777888888888765210 1111000 0011122222211
Q ss_pred cccccccchHHHHHHHHHHHHCCeEecccCCc-------------------------ceEEe--cCCcHHHHHHHHHHHH
Q 011959 416 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTS--LAHSSDDIQHTITAAE 468 (474)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-------------------------~~~~~--~~~t~e~i~~~l~~l~ 468 (474)
....+.+.+.|.++||.+...... .++++ ...|++|++++++.|+
T Consensus 298 --------~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~ 369 (377)
T 3ju7_A 298 --------EVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLG 369 (377)
T ss_dssp --------TSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHT
T ss_pred --------hhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHH
Confidence 111367889999999987654210 12444 3569999999999998
Q ss_pred HHHh
Q 011959 469 KVLR 472 (474)
Q Consensus 469 ~~~~ 472 (474)
+++.
T Consensus 370 ~~~~ 373 (377)
T 3ju7_A 370 QKVV 373 (377)
T ss_dssp C---
T ss_pred HHHh
Confidence 8764
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-16 Score=163.77 Aligned_cols=302 Identities=11% Similarity=-0.002 Sum_probs=181.0
Q ss_pred CHHHHHHHHHHHhhCCCC-----------CeEEEeCCHHHHHHHHHHHhHhhc----------------CCcEEEEEeCC
Q 011959 138 CLLENVLAEMVISAVPSI-----------EMVRFVNSGTEACMGVLRLARAFT----------------GRERIIKFEGC 190 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~-----------~~v~~~~sGseA~~~al~~ar~~~----------------~~~~ii~~~~~ 190 (474)
.+++.++.+++++.++-. ...+|++|||+||..|+..+|... .++.+|+....
T Consensus 117 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~ 196 (481)
T 4e1o_A 117 TELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQ 196 (481)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETT
T ss_pred HHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCc
Confidence 467788888888887421 267999999999999999886531 12446666666
Q ss_pred CCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC---CCCeEEEEEccccCCCCcccCCHH
Q 011959 191 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPD 267 (474)
Q Consensus 191 yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~ 267 (474)
.|.+...+....|..+..++... .+. -|+++|++.|++. +..+.+|++....+++|.+.|
T Consensus 197 ~H~s~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~--- 259 (481)
T 4e1o_A 197 AHSSVEKAGLISLVKMKFLPVDD-NFS-------------LRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC--- 259 (481)
T ss_dssp SCHHHHHHHHHHTCEEEEECCCT-TSC-------------CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---
T ss_pred chHHHHHHHHhCCCceEEEEcCC-CCc-------------CCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC---
Confidence 67666555555555433322211 110 1899999999742 112566677767777899888
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCC-CCceee--hhhhcCCCcceEEEEecH-HHHH-hhcCCCCc
Q 011959 268 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRR-DIME-MVAPAGPM 341 (474)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~t--~sK~l~~G~~iG~~~~~~-~i~~-~~~~~~~~ 341 (474)
+++|.++|++||++|++|++|.+. .....+.....|+ ..|.++ ..|.+++...+|+++.++ +.+. .+.. ...
T Consensus 260 -l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~-~~~ 337 (481)
T 4e1o_A 260 -LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSV-NPI 337 (481)
T ss_dssp -HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCC-CCG
T ss_pred -HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcC-Cch
Confidence 999999999999999999999765 3222111111233 247664 689998666688886654 4332 2221 111
Q ss_pred cccc----------------CCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEE
Q 011959 342 YQAG----------------TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 405 (474)
Q Consensus 342 ~~~~----------------t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~ 405 (474)
+... +.....+.+.+++..+..-.-+++.++..++.+++.+.|+++. ++.........++.
T Consensus 338 yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~---g~~~~~~~~~~~v~ 414 (481)
T 4e1o_A 338 YLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDP---SFEIPAKRHLGLVV 414 (481)
T ss_dssp GGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---TEECCSCCCSSEEE
T ss_pred hccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCceeEEE
Confidence 1110 1111234444444443211114566777777888887776531 11111122334444
Q ss_pred EEEecCCCcCcccccccchHHHHHHHHHHHHCCeE-eccc---CCcceEEec---CCcHHHHHHHHHHHHHHHhh
Q 011959 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY-FAPS---QFEAGFTSL---AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~-v~~~---~~~~~~~~~---~~t~e~i~~~l~~l~~~~~~ 473 (474)
+.+.. ......++.+.|.++|++ +.+. +...+|+++ ..|+++|++++++|+++.++
T Consensus 415 f~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 415 FRLKG------------PNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp EEESS------------CHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCC------------chHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44421 123346788889988844 4432 223467753 34899999999999998765
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=166.81 Aligned_cols=303 Identities=8% Similarity=-0.066 Sum_probs=182.4
Q ss_pred CCHHHHHHHHHHHHhcCC--CCCC--CHHHHHHHHHHHhhCC-C-CCeEEE-eCCHHHHHHHHHHHhHhhcCCcEEEEEe
Q 011959 116 ADDQVLAALGETMKKGTS--FGAP--CLLENVLAEMVISAVP-S-IEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFE 188 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~--~~~~--~~~~~~la~~l~~~~~-~-~~~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~ 188 (474)
.+|+|++++.+....... ..++ .+...++.++++++++ . .++++| ++||++|++.+++. +.+++ ++...
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~---l~~~g-v~~v~ 126 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFG---LIDKR-SLHLT 126 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHH---TCSSC-EEEEE
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHH---hcCCC-eEEEe
Confidence 578999998773111111 1122 2346789999999986 2 358998 99999999999994 33444 33335
Q ss_pred CCCCCCchh-HHHhc--CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCC
Q 011959 189 GCYHGHADP-FLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265 (474)
Q Consensus 189 ~~yhg~~~~-~~~~~--g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~ 265 (474)
.++|+.... ..... |..+..++.. .+.. .+. .+. +++++|++..++|++|.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~------------~~~-----~i~---~~~~~v~~~~~~nptG~~~~~ 184 (398)
T 2fyf_A 127 YGEFSAKFASAVSKNPFVGEPIIITSD--PGSA------------PEP-----QTD---PSVDVIAWAHNETSTGVAVAV 184 (398)
T ss_dssp CSHHHHHHHHHHHHCTTSCCCEEEECC--TTCC------------CCC-----CCC---TTCSEEEEESEETTTTEECCC
T ss_pred CCHHHHHHHHHHHHhCCCCceEEEecC--CCCC------------CCc-----ccc---CCCCEEEEeCcCCCcceecch
Confidence 566653222 11222 2221111111 1110 011 022 357788888888889999984
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCC----
Q 011959 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA---- 338 (474)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~---- 338 (474)
++|.++ ||++||+||+|+.+ .. ...+ .+|++ +++|.++++.++|++++++++++.+...
T Consensus 185 ----~~i~~~---~~~~vivD~a~~~~~~~---~~~~----~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~ 250 (398)
T 2fyf_A 185 ----RRPEGS---DDALVVIDATSGAGGLP---VDIA----ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATG 250 (398)
T ss_dssp ----CCCTTC---C-CEEEEECTTTTTTSC---CCGG----GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTT
T ss_pred ----HHhhhh---cCCeEEEEeccccCCcc---cCcc----cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccC
Confidence 445554 89999999999744 22 1111 25666 5779999543599999999988776310
Q ss_pred ---CCccc----------ccC-CCCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCeeEE--e
Q 011959 339 ---GPMYQ----------AGT-LSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAICG--G 398 (474)
Q Consensus 339 ---~~~~~----------~~t-~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v--~ 398 (474)
..... ..+ .+.+..+++++.++|+.+.+. +..++++++.+++.+.|+++ . ++.... +
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~~ 327 (398)
T 2fyf_A 251 RWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER-P--YTTPFVTDP 327 (398)
T ss_dssp CCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS-T--TEEESCCSG
T ss_pred CCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc-C--CceeccCCh
Confidence 00000 122 345666777777888765432 34566666677777777654 1 221111 1
Q ss_pred -eece-eEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecC--CcHHHHHHHHHHHHHH
Q 011959 399 -YISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITAAEKV 470 (474)
Q Consensus 399 -~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~--~t~e~i~~~l~~l~~~ 470 (474)
+.+. ++++.+... ....++.+.|.++||.+.++. ...+|+++. .|++++++++++|+++
T Consensus 328 ~~~~~~~~~~~~~~~-------------~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 394 (398)
T 2fyf_A 328 GLRSQVVGTIDFVDD-------------VDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWV 394 (398)
T ss_dssp GGBCSSEEEEEECTT-------------SCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hhcCCcEEEEECCCC-------------CCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 1234 777766321 012578889999999997642 245788765 5999999999999999
Q ss_pred HhhC
Q 011959 471 LRQI 474 (474)
Q Consensus 471 ~~~~ 474 (474)
++++
T Consensus 395 l~~~ 398 (398)
T 2fyf_A 395 VERL 398 (398)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 8764
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-17 Score=164.20 Aligned_cols=281 Identities=15% Similarity=0.146 Sum_probs=173.9
Q ss_pred CCHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHhHhhcCCcEEEE
Q 011959 116 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 186 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~------~~~~~~~~~~~~~la~~l~~~~~~~~~v~~---~~sGseA~~~al~~ar~~~~~~~ii~ 186 (474)
++.+|++++.+.... ...+++......+|.+.+++++ +.+..++ ++||++|+..+++. ....++.||+
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~-g~e~alv~p~~~sGt~Ai~~al~a--ll~~GD~Vl~ 106 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVF-KTEAALVRPQIISGTHAISTVLFG--ILRPDDELLY 106 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHH-TCSEEEEETTSCSHHHHHHHHHHH--HCCTTCEEEE
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHh-CCCcEEEECCCccHHHHHHHHHHH--hcCCCCEEEE
Confidence 457788888775421 1234566777888999998888 5566666 89999999999984 2344567777
Q ss_pred Ee-CCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-----CCHHHHHHHHhcCCCCeEEEEEcc----cc
Q 011959 187 FE-GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEP----VV 256 (474)
Q Consensus 187 ~~-~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~a~vi~ep----~~ 256 (474)
.+ +.|.+. ...+...|... ......+..+..++. .|++++++.++. ++++|++++ ++
T Consensus 107 ~~~~~y~~~-~~~~~~~g~~~---------~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~---~tklV~i~~s~g~p~ 173 (409)
T 3jzl_A 107 ITGQPYDTL-EEIVGIRKQGQ---------GSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP---KTKMIGIQRSRGYAD 173 (409)
T ss_dssp CSSSCCTTH-HHHHTSSSSSS---------SCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT---TEEEEEEECSCTTSS
T ss_pred eCCCCcHhH-HHHHhcccchh---------hHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC---CCeEEEEECCCCCCC
Confidence 76 555553 22221111000 000011122334443 389999998863 689999998 88
Q ss_pred CCCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCC--cceEEEEecH
Q 011959 257 GNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGG--LPVGAYGGRR 329 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G--~~iG~~~~~~ 329 (474)
|++|.+.+ +++|.++|++ ||++||+||+|..+ ..... ..+| .|++ +++|.++++ ...|++++++
T Consensus 174 nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~~p---~~~g--~Div~~S~sK~lgg~~~~~GG~v~~~~ 244 (409)
T 3jzl_A 174 RPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQEP---PEVG--ADIIAGSLIKNPGGGLAKTGGYIAGKE 244 (409)
T ss_dssp SCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSCCS---GGGT--CSEEEEETTSGGGTTTCSSCEEEEECH
T ss_pred CCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccCCc---cccC--CeEEEECccccCCccCCceEEEEEeCH
Confidence 88998877 9999999999 99999999999644 22111 1123 4665 799999964 3468889999
Q ss_pred HHHHhhcC--CCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee-EEeeeceeEEE
Q 011959 330 DIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGF 406 (474)
Q Consensus 330 ~i~~~~~~--~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~~~i 406 (474)
++++.+.. ..+. .+.+.+..+..+.+++..++.+ +..+++..++..++.+.|+++..+. .+. ..++...++.+
T Consensus 245 ~li~~l~~~~~~~~-~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~v-~p~~~~~~~~~i~~i 320 (409)
T 3jzl_A 245 ALVDLCGYRLTTPG-IGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFGVEA-DPVWDAPRTDLIQSV 320 (409)
T ss_dssp HHHHHHHHHHSCTT-TGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEE-ESCTTSCCSSSCCEE
T ss_pred HHHHHHHHHhcccc-ccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCCCcc-cCCCCCCCccEEEEE
Confidence 99988863 1111 1112222222234444555433 4567778888888888888753211 000 00111225555
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHCC
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 438 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 438 (474)
.+. +.+...+|++.|.+..
T Consensus 321 ~l~-------------~~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 321 SFH-------------NKEKMVAFAQAIQAAS 339 (409)
T ss_dssp ECS-------------CHHHHHHHHHHHHHTS
T ss_pred EeC-------------CHHHHHHHHHHHHhcC
Confidence 542 3456678889988874
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-16 Score=162.41 Aligned_cols=322 Identities=11% Similarity=-0.012 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHhcC-CCC-C--CCHHHHHHHHHHHhhCCCC----------CeEEEeCCHHHHHHHHHHHhHhh--c---
Q 011959 119 QVLAALGETMKKGT-SFG-A--PCLLENVLAEMVISAVPSI----------EMVRFVNSGTEACMGVLRLARAF--T--- 179 (474)
Q Consensus 119 ~v~~a~~~~~~~~~-~~~-~--~~~~~~~la~~l~~~~~~~----------~~v~~~~sGseA~~~al~~ar~~--~--- 179 (474)
.+.+++...+.... .+. . ..+++.+++++++++++-. ..+++++|||+|+..++..+|.. .
T Consensus 89 ~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~ 168 (486)
T 1js3_A 89 MLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQ 168 (486)
T ss_dssp HHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhh
Confidence 36666666654321 111 1 2466778888999888521 35899999999999999877542 1
Q ss_pred ---C--------CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC---C
Q 011959 180 ---G--------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---G 245 (474)
Q Consensus 180 ---~--------~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~---~ 245 (474)
+ ++.+|+.....|.....++...|..+..++.. ..+. -|+++|++.|++.. .
T Consensus 169 ~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d-~~~~-------------~d~~~L~~~i~~~~~~g~ 234 (486)
T 1js3_A 169 AASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD-GKFA-------------MRASALQEALERDKAAGL 234 (486)
T ss_dssp HHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC-TTSC-------------CCHHHHHHHHHHHHHTTC
T ss_pred ccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC-CCCC-------------CCHHHHHHHHHHHHhCCC
Confidence 2 12334444444544555555556544332221 1110 18999999997421 1
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCC-CCceee--hhhhcCCCcc
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLP 321 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~t--~sK~l~~G~~ 321 (474)
.+.+|++...++++|.+.+ +++|.++|++||++|++|++|.++ .....+.....++ ..|.++ .+|.++..++
T Consensus 235 ~p~~vv~~~~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~ 310 (486)
T 1js3_A 235 IPFFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD 310 (486)
T ss_dssp EEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS
T ss_pred CceEEEEeCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcc
Confidence 1246666666677898888 999999999999999999999765 3221111111122 246654 6899987688
Q ss_pred eEEEEecHH--HHHhhcCCCCcccc-----------------cCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 011959 322 VGAYGGRRD--IMEMVAPAGPMYQA-----------------GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382 (474)
Q Consensus 322 iG~~~~~~~--i~~~~~~~~~~~~~-----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 382 (474)
+|+++.+++ +.+.+......... .+.....+++.+++..+..-.-++..++..++.+++.+
T Consensus 311 ~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~ 390 (486)
T 1js3_A 311 CSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEA 390 (486)
T ss_dssp CEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999988654 24444211011000 01112234444444433210014556666777777777
Q ss_pred HHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc----CCcceEEecC---C
Q 011959 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----QFEAGFTSLA---H 455 (474)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~~~~~~~~~---~ 455 (474)
.|++. . ++.......+.++.+.+.. ......++.+.|.++|+++... +...+|+++. .
T Consensus 391 ~L~~~-~--~~~~~~~~~~~~v~f~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~ 455 (486)
T 1js3_A 391 FVLQD-P--RFEVCAEVTLGLVCFRLKG------------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKV 455 (486)
T ss_dssp HHHHC-T--TEEECSCCCSSEEEEEESS------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTC
T ss_pred HHhcC-C--CeEEeCCCceeEEEEEecC------------hHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCC
Confidence 77653 1 1111111234444444421 1122367888888888654322 2235677643 4
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011959 456 SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~ 473 (474)
|+++|++++++|++++++
T Consensus 456 t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 456 ESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 899999999999988754
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-16 Score=164.47 Aligned_cols=320 Identities=13% Similarity=0.014 Sum_probs=190.1
Q ss_pred CCHHHHHHHHHHHHhcCC-CC-C--CCHHHHHHHHHHHhhCC-C--CC---eEEEeCCHHHHHHHHHHHhHhh-------
Q 011959 116 ADDQVLAALGETMKKGTS-FG-A--PCLLENVLAEMVISAVP-S--IE---MVRFVNSGTEACMGVLRLARAF------- 178 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~-~~-~--~~~~~~~la~~l~~~~~-~--~~---~v~~~~sGseA~~~al~~ar~~------- 178 (474)
.+|.+.+++.+.+..... +. + ..+++.++.++++++++ . .+ ...+++||++|+..++..++.-
T Consensus 68 ~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~ 147 (502)
T 3hbx_A 68 MEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (502)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHh
Confidence 589999999887765321 11 1 24566788888999885 2 22 3356999999999998865432
Q ss_pred cC----CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011959 179 TG----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (474)
Q Consensus 179 ~~----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (474)
.| +..||+.+.+ |.....++...|..+..++.....+. -|+++|++.+++ ++++|+++.
T Consensus 148 ~G~~~~~~~vi~~~~~-h~s~~~~~~~~G~~~~~v~~~~~~~~-------------~d~~~l~~~i~~---~t~~v~~~~ 210 (502)
T 3hbx_A 148 EGKPVDKPNIVTGANV-QVCWEKFARYFEVELKEVKLSEGYYV-------------MDPQQAVDMVDE---NTICVAAIL 210 (502)
T ss_dssp TTCCCSCCEEEEETTC-CHHHHHHHHHTTCEEEEECCBTTBCS-------------CCHHHHHHHCCT---TEEEEEEEB
T ss_pred cCCCCCCcEEEEcCCc-hHHHHHHHHHcCceeEEEecCCCcCc-------------CCHHHHHHHHhh---CCEEEEEec
Confidence 02 1256655444 55444455555544332221110010 189999998874 577788777
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHHh------CCEEEEeccccCc-c--cCCCccccccC-CCCcee--ehhhhcCCCcce
Q 011959 255 VVGNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R--LAYGGAQEYFG-VTPDLT--TLGKIIGGGLPV 322 (474)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~-r--~g~~~~~~~~g-~~pdi~--t~sK~l~~G~~i 322 (474)
+++++|.+.+ +++|.++|++| |++|++|++|.|+ . ........ +. ...|++ +..|.+.++.++
T Consensus 211 ~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~-~~~~~~D~v~~s~hK~l~~p~g~ 285 (502)
T 3hbx_A 211 GSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD-FRLPLVKSINVSGHKYGLVYAGI 285 (502)
T ss_dssp SCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS-TTSTTEEEEEEETTTTTCCCSSC
T ss_pred CCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccc-cCCCCceEEEECcccccCCCCCe
Confidence 7788899988 99999999999 9999999999865 2 11111111 11 123555 456877777889
Q ss_pred EEEEec-HHHH-HhhcCCCCccccc-----C--CCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 323 GAYGGR-RDIM-EMVAPAGPMYQAG-----T--LSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 323 G~~~~~-~~i~-~~~~~~~~~~~~~-----t--~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
|+++.+ ++.+ +.+... ..+..+ + ++.+.....+..++++.+.. ....++..++.+++.+.|+++
T Consensus 286 G~~~~~~~~~l~~~~~~~-~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~--- 361 (502)
T 3hbx_A 286 GWVIWRNKEDLPEELIFH-INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKT--- 361 (502)
T ss_dssp EEEEESSGGGSCGGGCEE-ECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred EEEEEeCHHHhhHHhccC-cccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 988665 4443 222110 011110 1 22222233444455554432 345566667777777777654
Q ss_pred cCCeeEEe--eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-------cceEEe--cCCcHHH
Q 011959 391 AGHAICGG--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTS--LAHSSDD 459 (474)
Q Consensus 391 ~~~~~~v~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~~~--~~~t~e~ 459 (474)
+....+. ....++.+.+..... .....+.+.|.++|+++..... ..+|++ ..+|+++
T Consensus 362 -~~~~~~~~~~~~~~v~f~~~~~~~-----------~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~ed 429 (502)
T 3hbx_A 362 -ERFNIVSKDEGVPLVAFSLKDSSC-----------HTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTL 429 (502)
T ss_dssp -TCEEECSCSSSSSEEEEEESSCSS-----------CCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHH
T ss_pred -CCEEEEeCCCCceEEEEEecCCCc-----------CCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHH
Confidence 3111111 234556666543210 1124788999999998753321 235664 4569999
Q ss_pred HHHHHHHHHHHHhh
Q 011959 460 IQHTITAAEKVLRQ 473 (474)
Q Consensus 460 i~~~l~~l~~~~~~ 473 (474)
++.+++.|++++++
T Consensus 430 id~li~~L~~~l~~ 443 (502)
T 3hbx_A 430 AERLVIDIEKVMRE 443 (502)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-16 Score=160.37 Aligned_cols=334 Identities=13% Similarity=0.025 Sum_probs=192.4
Q ss_pred CHHH-HHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC-C--CCeEEEeCCHHHHHHHHHHHhHhhc-------C-
Q 011959 117 DDQV-LAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFT-------G- 180 (474)
Q Consensus 117 ~p~v-~~a~~~~~~~~~-~~~~---~~~~~~~la~~l~~~~~-~--~~~v~~~~sGseA~~~al~~ar~~~-------~- 180 (474)
+|.+ .+++.+.+.... .+.. ..+++.+++++++++++ . .+.++|++||++|+..++..++... |
T Consensus 108 ~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~ 187 (511)
T 3vp6_A 108 IIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGM 187 (511)
T ss_dssp HHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCG
T ss_pred HHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCc
Confidence 3444 355555554422 2211 23567788888888875 2 3589999999999999999876531 1
Q ss_pred ---CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-----CHHHHHHHHhcC---CCCeEE
Q 011959 181 ---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENN---KGEIAA 249 (474)
Q Consensus 181 ---~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~a~ 249 (474)
++.+|+.....|.....++...|.+.. .+..+|.+ |+++|++.|++. +..+++
T Consensus 188 ~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~----------------~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~ 251 (511)
T 3vp6_A 188 AAVPKLVLFTSEQSHYSIKKAGAALGFGTD----------------NVILIKCNERGKIIPADFEAKILEAKQKGYVPFY 251 (511)
T ss_dssp GGSCCEEEEEETTSCTHHHHHHHHTTSCGG----------------GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCeEEEECCCchHHHHHHHHHcCCCCC----------------cEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEE
Confidence 344556666667666666665554221 12222221 899999999742 223788
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCC-CCcee--ehhhhcCCCcceEEE
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAY 325 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~--t~sK~l~~G~~iG~~ 325 (474)
|+++.+++++|.+.+ +++|.++|++||++|++|++|.+. .....+.....|+ ..|++ +.+|.+++.+.+|++
T Consensus 252 vv~~~~~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l 327 (511)
T 3vp6_A 252 VNATAGTTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAI 327 (511)
T ss_dssp EEEEBSCSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEE
T ss_pred EEEecCCCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEE
Confidence 888888888999988 999999999999999999999765 3221111111232 34665 478999866678888
Q ss_pred EecH-HHHHhhcCCCCccccc------------------CCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 011959 326 GGRR-DIMEMVAPAGPMYQAG------------------TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIID 386 (474)
Q Consensus 326 ~~~~-~i~~~~~~~~~~~~~~------------------t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~ 386 (474)
+.++ ++++........+... +.....+.+.+++..+..-.-+++.++..++.+++++.|++
T Consensus 328 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~ 407 (511)
T 3vp6_A 328 LVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKN 407 (511)
T ss_dssp EESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6654 4454432111111100 00122333444443332111145677777788888888765
Q ss_pred HhhhcCCeeEE--eeeceeEEEEEecCCCcCcccc---cccchHHHHHHHHHHHHCCeEeccc---C--CcceEEe---c
Q 011959 387 AGKKAGHAICG--GYISGMFGFFFTEGPVYNFEDA---KKSETTKFARFYRGMLEEGVYFAPS---Q--FEAGFTS---L 453 (474)
Q Consensus 387 ~~~~~~~~~~v--~~~g~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~Gv~v~~~---~--~~~~~~~---~ 453 (474)
. . ++.... .....++.+.+........... .........++.+.|+++|+++... . ...+|++ .
T Consensus 408 ~-p--g~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~ 484 (511)
T 3vp6_A 408 R-E--EFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNP 484 (511)
T ss_dssp C-T--TEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCT
T ss_pred C-C--CEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCC
Confidence 3 1 111111 1334444544432111100000 0000112346888999999654331 1 1246664 4
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q 011959 454 AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~~t~e~i~~~l~~l~~~~~~ 473 (474)
.++++||+.+++.|++.-+.
T Consensus 485 ~~t~~di~~ll~~i~~~~~~ 504 (511)
T 3vp6_A 485 AATQSDIDFLIEEIERLGQD 504 (511)
T ss_dssp TCCHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 56999999999999987654
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-16 Score=162.10 Aligned_cols=301 Identities=11% Similarity=0.041 Sum_probs=179.8
Q ss_pred CHHHHHHHHHHHhhCCCC----------CeEEEeCCHHHHHHHHHHHhHhhc-------C---------CcEEEEEeCCC
Q 011959 138 CLLENVLAEMVISAVPSI----------EMVRFVNSGTEACMGVLRLARAFT-------G---------RERIIKFEGCY 191 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~----------~~v~~~~sGseA~~~al~~ar~~~-------~---------~~~ii~~~~~y 191 (474)
.+++.++.+++++.++-. ...+|++|||+||..|+..+|... + ++.+|+.+...
T Consensus 112 ~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~ 191 (475)
T 3k40_A 112 TELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQA 191 (475)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTS
T ss_pred HHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCc
Confidence 467788888999988522 268999999999999999886442 1 23456666666
Q ss_pred CCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC---CCCeEEEEEccccCCCCcccCCHHH
Q 011959 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDF 268 (474)
Q Consensus 192 hg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (474)
|.....++...|..+..++... .+ -|+++|++.|++. +..+.+|++....+++|.+.|
T Consensus 192 H~s~~~~~~~~g~~~~~v~~d~-~~--------------~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---- 252 (475)
T 3k40_A 192 HSSVERAGLLGGVKLRSVQSEN-HR--------------MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---- 252 (475)
T ss_dssp CHHHHHHHHHHTCEEEEECCBT-TB--------------CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----
T ss_pred hHHHHHHHHHcCCceEEEECCC-CC--------------cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----
Confidence 7666666555565433322211 11 1899999998752 112556666666677899988
Q ss_pred HHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCC-CCceee--hhhhcCCCcceEEEEecHH-HH-HhhcCCCCcc
Q 011959 269 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD-IM-EMVAPAGPMY 342 (474)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~t--~sK~l~~G~~iG~~~~~~~-i~-~~~~~~~~~~ 342 (474)
+++|.++|++||+++++|++|.+. .....+.....|+ ..|.++ ..|.+++...+|+++.+++ .+ +.+... ..+
T Consensus 253 l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~-~~y 331 (475)
T 3k40_A 253 LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVD-PLY 331 (475)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-----------
T ss_pred HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCC-ccc
Confidence 999999999999999999999754 3221111111233 347664 6799987677888866543 32 222110 001
Q ss_pred ccc------------CC-CCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEE
Q 011959 343 QAG------------TL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (474)
Q Consensus 343 ~~~------------t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (474)
... +. .+-+.......++|+.+.. +++.++..++.+++.+.|+++. ++....+....++.+
T Consensus 332 l~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~---g~~l~~~~~~~iv~f 408 (475)
T 3k40_A 332 LKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADS---RFELAAEINMGLVCF 408 (475)
T ss_dssp -----------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST---TEEESSCCBTTEEEE
T ss_pred cCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC---CEEEecCCceEEEEE
Confidence 000 00 1111222333344443322 4566777778888888887641 111111123344444
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHCCeEe-ccc---CCcceEEecC---CcHHHHHHHHHHHHHHHhh
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF-APS---QFEAGFTSLA---HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v-~~~---~~~~~~~~~~---~t~e~i~~~l~~l~~~~~~ 473 (474)
.+.. ......++.+.|.++|.++ .+. +...+|+++. .|++||++++++|+++.++
T Consensus 409 ~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 470 (475)
T 3k40_A 409 RLKG------------SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADE 470 (475)
T ss_dssp EESS------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeCC------------chHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4421 2233467888898888654 332 2335677643 4899999999999998765
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-16 Score=156.75 Aligned_cols=279 Identities=16% Similarity=0.129 Sum_probs=174.6
Q ss_pred CCHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHhHhhcCCcEEEE
Q 011959 116 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 186 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~------~~~~~~~~~~~~~la~~l~~~~~~~~~v~~---~~sGseA~~~al~~ar~~~~~~~ii~ 186 (474)
++++|++|+.+.... ...|+++.....+|.+.+++++ +.+..++ ++||++|+..++.. ....++.|++
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~-g~e~alv~p~~~sGt~A~~~al~a--ll~pGD~Vl~ 121 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIF-NTESAFVRPHFVNGTHAIGAALFG--NLRPNDTMMS 121 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHH-TCSEEEEETTCCSHHHHHHHHHHH--TCCTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHh-CCCceEEeCCCCcHHHHHHHHHHH--hcCCCCEEEE
Confidence 357888888775321 1235566667788889998888 5566666 89999999999984 2445677887
Q ss_pred Ee-CCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC----CCHHHHHHHHhcCCCCeEEEEEcc----ccC
Q 011959 187 FE-GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFENNKGEIAAIILEP----VVG 257 (474)
Q Consensus 187 ~~-~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~a~vi~ep----~~~ 257 (474)
.+ +.|++.. ... .+... + ........+..+..++. .|+++++++++++ +++++|++++ ++|
T Consensus 122 ~~~~~y~~~~-~~~--g~~~~-----~-~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~n 191 (427)
T 3hvy_A 122 ICGMPYDTLH-DII--GMDDS-----K-KVGSLREYGVKYKMVDLKDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWR 191 (427)
T ss_dssp CSSSCCGGGH-HHH--TCCTT-----C-CSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSS
T ss_pred eCCCCchhHH-HHh--ccccc-----h-hhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCC
Confidence 77 6776642 111 00000 0 00001111223444444 4899999999742 2689999999 778
Q ss_pred CCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCC--cceEEEEecHH
Q 011959 258 NSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGG--LPVGAYGGRRD 330 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G--~~iG~~~~~~~ 330 (474)
++|.+.+ +++|+++|++ ||++||+||+|..+ ...... .+| .|++ |++|.++++ .+.|+++++++
T Consensus 192 ptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~---~~g--aDiv~~S~sK~lgg~g~~~GG~i~~~~~ 262 (427)
T 3hvy_A 192 KSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKEPT---DVG--ADIIAGSLIKNIGGGIATTGGYIAGKEE 262 (427)
T ss_dssp CCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred ccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCCCc---ccC--CeEEEECCcccccccccceEEEEEECHH
Confidence 8888876 9999999999 89999999999644 222111 123 3554 799999964 45688899999
Q ss_pred HHHhhcCC--CCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeee-----cee
Q 011959 331 IMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI-----SGM 403 (474)
Q Consensus 331 i~~~~~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~-----g~~ 403 (474)
+++.++.. .+. .+.+.+.++..+..++..++.+ +...++..++..++.+.|++.. ... .++. ..+
T Consensus 263 li~~l~~~~~~~~-~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~g----~~V-~p~~~~~~~~li 334 (427)
T 3hvy_A 263 YVTQATFRVTVPG-IGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELAG----FDV-LPKYNDKRTDII 334 (427)
T ss_dssp HHHHHHHHHSCTT-TGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT----CEE-ESCTTSCCSSSE
T ss_pred HHHHHHHHhhcCC-cccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhCC----Cee-cCCCCCCCceEE
Confidence 99888631 111 1112222222234444444433 4567778888888888887653 211 1222 225
Q ss_pred EEEEEecCCCcCcccccccchHHHHHHHHHHHHC
Q 011959 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (474)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (474)
+.+.+. +.+...+|++.|...
T Consensus 335 ~~~~l~-------------~~~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 335 QAIKFN-------------DEKKLIDFIKGIQTA 355 (427)
T ss_dssp EEEECS-------------SHHHHHHHHHHHHHT
T ss_pred EEEeCC-------------CHHHHHHHHHHhccc
Confidence 555553 335567788888775
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.3e-16 Score=153.63 Aligned_cols=277 Identities=17% Similarity=0.154 Sum_probs=172.3
Q ss_pred CHHHHHHHHHHHH--h----cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHhHhhcCCcEEEEE
Q 011959 117 DDQVLAALGETMK--K----GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIKF 187 (474)
Q Consensus 117 ~p~v~~a~~~~~~--~----~~~~~~~~~~~~~la~~l~~~~~~~~~v~~---~~sGseA~~~al~~ar~~~~~~~ii~~ 187 (474)
.++|++|+.+... . ...|++......+|.+.+++++ +.+..++ ++||++|+..++.. ...+++.||+.
T Consensus 45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~-g~e~alv~p~~~sGt~Ai~~al~a--ll~pGD~Vl~~ 121 (427)
T 3i16_A 45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVF-NTESALVRPHFVNGTHALGAALFG--NLRPGNTMLSV 121 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHH-TCSEEEEETTCCSHHHHHHHHHHH--HCCTTCEEEES
T ss_pred HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeCCCccHHHHHHHHHHH--HhCCCCEEEEe
Confidence 3678888776421 1 1235566677888889999888 4555566 89999999999984 23455777777
Q ss_pred e-CCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-----CCHHHHHHHHhcCCCCeEEEEEcc----ccC
Q 011959 188 E-GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEP----VVG 257 (474)
Q Consensus 188 ~-~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~a~vi~ep----~~~ 257 (474)
+ +.|++... .+...+.. ........+..+..++. .|++++++.++++ +++++|++++ ++|
T Consensus 122 ~~~~y~~~~~-~~g~~~~~--------~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~n 191 (427)
T 3i16_A 122 CGEPYDTLHD-VIGITENS--------NMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWR 191 (427)
T ss_dssp SSSCCGGGHH-HHTCSCCC--------SSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSS
T ss_pred CCCccHHHHH-HHhccccc--------hHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCC
Confidence 7 66665321 11000000 00000111223444444 3899999999842 3689999999 788
Q ss_pred CCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCC-C-cceEEEEecHH
Q 011959 258 NSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRD 330 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~~~ 330 (474)
++|.+.+ +++|.++|++ ||++||+||+|..+ ...... .+| .|++ +++|.+++ | .+.|+++++++
T Consensus 192 ptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~p~---~~g--aDiv~~S~sK~lgg~g~~~gG~i~~~~~ 262 (427)
T 3i16_A 192 RALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT---DVG--ADLIAGSLIKNIGGGIAPTGGYLAGTKD 262 (427)
T ss_dssp CCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred CcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCCcc---ccC--CeEEEecCcccCCCCCCceEEEEEECHH
Confidence 8888877 9999999999 99999999999644 222111 123 3554 79999996 4 46799999999
Q ss_pred HHHhhcC--CCCcccccCCCCChHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeece-----
Q 011959 331 IMEMVAP--AGPMYQAGTLSGNPLA-MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG----- 402 (474)
Q Consensus 331 i~~~~~~--~~~~~~~~t~~~~~~~-~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~----- 402 (474)
+++.++. ..+. .+... ++.+. +..++..++.+ +...++..++..++.+.|++.. ... .++...
T Consensus 263 li~~l~~~~~~~~-~g~~~-~~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g----~~V-~p~~~~~~~~~ 333 (427)
T 3i16_A 263 CIEKTSYRLTVPG-IGGEC-GSTFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELAG----FEV-MPKYDEKRSDI 333 (427)
T ss_dssp HHHHHHHHHSCTT-TGGGC-CCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT----CEE-ESCTTSCCSSS
T ss_pred HHHHHHHhcccCc-cCccC-CccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCC----Cee-cCCCCCCCccE
Confidence 9988863 1111 11111 11122 33344444432 4567778888888888887753 211 122222
Q ss_pred eEEEEEecCCCcCcccccccchHHHHHHHHHHHHC
Q 011959 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (474)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (474)
++.+.+. +.+...+|++.|...
T Consensus 334 i~~i~l~-------------~~~~~~~f~~~l~~~ 355 (427)
T 3i16_A 334 IQSIKFN-------------DKDKLIEFCKGIQTG 355 (427)
T ss_dssp CEEEECS-------------SHHHHHHHHHHHHHT
T ss_pred EEEEEEC-------------CHHHHHHHHHHHhhc
Confidence 5566553 345567888888876
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-15 Score=156.94 Aligned_cols=310 Identities=10% Similarity=-0.021 Sum_probs=169.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCe-EEEeCCHHHHHHHHHHHhHhhc-CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCC-C
Q 011959 137 PCLLENVLAEMVISAVPSIEM-VRFVNSGTEACMGVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLP-D 213 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~-v~~~~sGseA~~~al~~ar~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~-~ 213 (474)
+.....++.+.+++.++ .+. ++++||+++|+.+++.. +. .+++||+..++|+....+.+...|..+...... .
T Consensus 171 ~~~~i~e~e~~lA~~~g-ae~~i~v~nGtt~an~~ai~a---l~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~ 246 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYN-ADKTYFVLGGSSNANNTVTSA---LVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN 246 (730)
T ss_dssp TBTHHHHHHHHHHHHTT-CSEEEEESSHHHHHHHHHHHH---HCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC
T ss_pred ChHHHHHHHHHHHHHHC-CCcEEEECCHHHHHHHHHHHH---hcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCcc
Confidence 34456788888888885 444 45555556999999984 44 455666666555443333244444422211100 0
Q ss_pred CCCCCCCCCCceEEccCCCHHHH-----HHHHhcC-CC---C--e-EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCC
Q 011959 214 SPGVPKGATYETLTAPFNDVSAL-----ENLFENN-KG---E--I-AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 281 (474)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~d~~~l-----e~~l~~~-~~---~--~-a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~ 281 (474)
..++ ...+ |+++| ++.++++ ++ . . ++|+++.. +.+|.+.+ +++|.++|++||+
T Consensus 247 ~~~i-------~g~i---d~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d----l~~I~~la~~~g~ 311 (730)
T 1c4k_A 247 PYGF-------IGGI---YDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN----AHEVVKRIGHLCD 311 (730)
T ss_dssp TTCC-------EEEE---CGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC----HHHHHHHHGGGBS
T ss_pred ccCc-------cCCC---CHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC----HHHHHHHHHHcCC
Confidence 0000 0011 55555 8888754 11 1 1 45544432 35899988 9999999999999
Q ss_pred EEEEeccccCc-ccCCC------ccccccCCC-Cc-ee--ehhhhcCCCcce-EEEEecHHHH---------HhhcCCCC
Q 011959 282 LLIFDEVMTGF-RLAYG------GAQEYFGVT-PD-LT--TLGKIIGGGLPV-GAYGGRRDIM---------EMVAPAGP 340 (474)
Q Consensus 282 llI~DEv~~g~-r~g~~------~~~~~~g~~-pd-i~--t~sK~l~~G~~i-G~~~~~~~i~---------~~~~~~~~ 340 (474)
+||+||+|.+. ..+.. ...+.+|.. ++ ++ +++|+++ |++. |++..+++.+ ..+.. .
T Consensus 312 ~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~-g~~~gg~I~v~~~~l~g~~~~i~~~~~~~--~ 388 (730)
T 1c4k_A 312 YIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA-GFSQTSQIHKKDSHIKGQLRYCDHKHFNN--S 388 (730)
T ss_dssp EEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS-CCTTCEEEEEECGGGTTSTTCCCHHHHHH--H
T ss_pred eEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCC-CCCCEEEEEecchhhcCcccccCHHHHHH--H
Confidence 99999999632 22211 111123432 22 33 6899986 4444 4554443321 11110 0
Q ss_pred cccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHH-H-hhhcCCeeEEe-----------------
Q 011959 341 MYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID-A-GKKAGHAICGG----------------- 398 (474)
Q Consensus 341 ~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~v~----------------- 398 (474)
.....+.+.++..+++..++++.+.. .++++++.++.+++++.|++ + ..+.-.+..+.
T Consensus 389 ~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~ 468 (730)
T 1c4k_A 389 FNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNID 468 (730)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGG
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccch
Confidence 11222445677777777777776653 45678888888889988877 2 11100000000
Q ss_pred --------------e--ece-e-----EEEEEecC--CCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--e
Q 011959 399 --------------Y--ISG-M-----FGFFFTEG--PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--S 452 (474)
Q Consensus 399 --------------~--~g~-~-----~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~ 452 (474)
+ .+. + +.+....- ....+. ........+.+.|.++||++...+...+++ +
T Consensus 469 ~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~----~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s 544 (730)
T 1c4k_A 469 YWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYE----DFGVPATIVANYLRDHGIIPEKSDLNSILFLMT 544 (730)
T ss_dssp GGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEEC----SSCCCHHHHHHHHHHTTCCCSEECSSEEEEECC
T ss_pred hhccCccchhccccccCCcccccCCeEEEEEeCCccccccccc----ccCCCHHHHHHHHHHCCcEEEECCCCeEEEEeC
Confidence 0 010 0 11111000 000000 001123568889999999998776555655 5
Q ss_pred cCCcHHHHHHHHHHHHHHHh
Q 011959 453 LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~~ 472 (474)
..+|++++++++++|.++.+
T Consensus 545 ~g~t~e~i~~Ll~aL~~i~~ 564 (730)
T 1c4k_A 545 PAETPAKMNNLITQLLQLQR 564 (730)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 67799999999999998764
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=155.52 Aligned_cols=235 Identities=9% Similarity=0.030 Sum_probs=138.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCC-C
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-P 215 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~-~ 215 (474)
+.....++.+.+++.++..+.++++||+++|+..++.. ....++.|++..++|+. ....+...|..+...+.... .
T Consensus 203 ~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~a--l~~~GD~Vlv~~~~h~s-~~~~~~~~G~~~v~v~~~~~~~ 279 (755)
T 2vyc_A 203 HTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQA--CMTDNDVVVVDRNCHKS-IEQGLMLTGAKPVYMVPSRNRY 279 (755)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH--HCCTTCEEEEESSCCHH-HHHHHHHHCCEEEEECCCBCTT
T ss_pred CccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHH--hcCCCCEEEECCCchHH-HHHHHHHcCCEEEEEeCCCCcc
Confidence 34555677777777774333455666667899999984 22345667766666554 33445555654322211100 0
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCC-------e-EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGE-------I-AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~-------~-a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DE 287 (474)
+.. ..+....-|+++|++.++++++. + .+++++| +.+|.+.+ +++|.++|++||++||+||
T Consensus 280 g~~-----g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~d----l~~I~~ia~~~~~~livDe 348 (755)
T 2vyc_A 280 GII-----GPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYN----AKEAQDLLEKTSDRLHFDE 348 (755)
T ss_dssp SCB-----CCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEEC----HHHHHHHHTTTCSEEEEEC
T ss_pred ccc-----cccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecC----HHHHHHHHHHcCCEEEEEC
Confidence 100 00000001799999999764322 1 3445554 45899988 9999999999999999999
Q ss_pred cccCc-ccCCCc--cccccC--CC---Cc---eeehhhhcCCCcc-eEEEEecHH--HH--HhhcCCCCcccccCCCCCh
Q 011959 288 VMTGF-RLAYGG--AQEYFG--VT---PD---LTTLGKIIGGGLP-VGAYGGRRD--IM--EMVAPAGPMYQAGTLSGNP 351 (474)
Q Consensus 288 v~~g~-r~g~~~--~~~~~g--~~---pd---i~t~sK~l~~G~~-iG~~~~~~~--i~--~~~~~~~~~~~~~t~~~~~ 351 (474)
+|.+. ..+..+ .....+ .. +. +.+++|+++ |++ .|+++++++ .+ ..+.. ......+.+.+.
T Consensus 349 A~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~-g~~~g~~i~~~~~~~~i~~~~~~~--~~~~~~s~sp~~ 425 (755)
T 2vyc_A 349 AWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN-ALSQASYIHVREGRGAINFSRFNQ--AYMMHATTSPLY 425 (755)
T ss_dssp TTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSS-CCTTCEEEEEECCBTCCCHHHHHH--HHHHTSCSSCCH
T ss_pred cCchhcccCcccCCcchhcCCcCCccCCCeEEEECcccccc-CcCCeeeeeecCcccccCHHHHHH--HHHHhCCCCHHH
Confidence 99643 322111 011123 11 11 237899986 444 566666543 11 12211 111222446677
Q ss_pred HHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHh
Q 011959 352 LAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAG 388 (474)
Q Consensus 352 ~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~ 388 (474)
+.+++..++++.+.. +++++++.++.++++++|+++.
T Consensus 426 ~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~ 465 (755)
T 2vyc_A 426 AICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY 465 (755)
T ss_dssp HHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 788887888887765 3578889999999999998863
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=153.64 Aligned_cols=308 Identities=8% Similarity=-0.008 Sum_probs=180.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCH-HHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSG-TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sG-seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
+.....++.+.+++.+ +.++.+|+++| +.||.+++. ++.++++.|+.+...|.+....+..+|..+..+.... .
T Consensus 193 ~~g~i~eaE~~lA~~f-Ga~~a~~v~nGts~An~~ai~---al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~-~ 267 (715)
T 3n75_A 193 HSGPHKEAEQYIARVF-NADRSYMVTNGTSTANKIVGM---YSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTR-N 267 (715)
T ss_dssp TBTHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH---HHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCB-C
T ss_pred CcHHHHHHHHHHHHHh-CCCCceEECcHHHHHHHHHHH---HhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEeccc-c
Confidence 3444567777787777 56777776666 699999888 5555555555556666666666777665433221110 0
Q ss_pred CCCCCCCCceEEccCC------CHHHHHHHHhcCCCCe---EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011959 216 GVPKGATYETLTAPFN------DVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~---a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (474)
. +.++++ |+++|+++++++++.. ++|+++| +..|.+.+ +++|.++|++++ ||+|
T Consensus 268 ~---------~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livD 330 (715)
T 3n75_A 268 A---------YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFD 330 (715)
T ss_dssp T---------TCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEE
T ss_pred c---------cccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEc
Confidence 0 011111 7999999998754322 3555566 67899998 999999998764 7999
Q ss_pred ccccCc-ccCCCcc-cc--ccCCCCce-----eehhhhcCCCc-ceEEEEecHHH-HHhhcCCCCcccccCCCCChHHHH
Q 011959 287 EVMTGF-RLAYGGA-QE--YFGVTPDL-----TTLGKIIGGGL-PVGAYGGRRDI-MEMVAPAGPMYQAGTLSGNPLAMT 355 (474)
Q Consensus 287 Ev~~g~-r~g~~~~-~~--~~g~~pdi-----~t~sK~l~~G~-~iG~~~~~~~i-~~~~~~~~~~~~~~t~~~~~~~~a 355 (474)
|+|.+. ..+..+. .. ..+..+|+ .|++|++++ + ..|++.+++++ .+.+.. ......|.+.+++.++
T Consensus 331 EAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~~~~~~~--~~~~~~STSpsy~~~A 407 (715)
T 3n75_A 331 SAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNE--AYMMHTTTSPHYGIVA 407 (715)
T ss_dssp CTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSC-CTTCEEEEEESCCCHHHHHH--HHHHTSCSSCCHHHHH
T ss_pred cccccccccCCccccccccccCcCCCEEEEEEecccccccC-CCCeeEEEeCchhhHHHHHH--HHHhhcCCCchHHHHH
Confidence 999533 2222111 11 12222564 368999874 3 36777666542 112221 1112335578888999
Q ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhc-CCeeE------EeeeceeEEEE----------------Ee
Q 011959 356 AGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA-GHAIC------GGYISGMFGFF----------------FT 409 (474)
Q Consensus 356 aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~------v~~~g~~~~i~----------------~~ 409 (474)
+..++++.++. +++++++.++.+++++.|+++.... +.... +.+... +.++ +.
T Consensus 408 sldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~w~gf~~~~~~~~~~ 486 (715)
T 3n75_A 408 STETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTEC-WPLRSDSTWHGFKNIDNEHMYL 486 (715)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSC-EECCTTCCTTCCTTCCSSSEEE
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhh-hccCcccccccccccccCcccC
Confidence 98899988762 5688999999999999998874311 00000 000000 0000 00
Q ss_pred cCCCcCcccccc----c----chHHHHHHHHHHHHCCeEecccCCcceE-E-ecCCcHHHHHHHHHHHHHHH
Q 011959 410 EGPVYNFEDAKK----S----ETTKFARFYRGMLEEGVYFAPSQFEAGF-T-SLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 410 ~~~~~~~~~~~~----~----~~~~~~~~~~~l~~~Gv~v~~~~~~~~~-~-~~~~t~e~i~~~l~~l~~~~ 471 (474)
++.+-...... . ..-....+.+.|.++||.+.-.....+. + +...|++++++++++|.++-
T Consensus 487 -Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~ 557 (715)
T 3n75_A 487 -DPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFK 557 (715)
T ss_dssp -CTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred -CCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 11000000000 0 0111245677788899988766544443 3 66779999999999988754
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-14 Score=144.24 Aligned_cols=281 Identities=16% Similarity=0.145 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHH----hcCCCCccCCCCC
Q 011959 139 LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV----KAGSGVATLGLPD 213 (474)
Q Consensus 139 ~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~----~~g~~~~~~~~~~ 213 (474)
+...++.++++++++ +.+.+.+++|++.++++++... ...++++||+.++.|+. +...+. ..|..+..++.
T Consensus 108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~-~~~~gd~Viv~~~~h~s-~~~~~~~~a~~~G~~v~~v~~-- 183 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLAL-RETGRMGVLVSQGVHPE-YRAVLRAYLEAVGAKLLTLPL-- 183 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHH-HHHTCCEEEEETTSCHH-HHHHHHHHHHHTTCEEEEECC--
T ss_pred HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHH-hcCCCCEEEEcCccCHh-HHHHHHHHHHHCCCEEEEEcC--
Confidence 456788888988885 3345678998995545444332 23566788877666544 332221 23433322211
Q ss_pred CCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe--ccccC
Q 011959 214 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD--EVMTG 291 (474)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D--Ev~~g 291 (474)
..+. + |+++ +. +++++|+++.+ |++|.+.+ +++|.++|++||+++|+| +...|
T Consensus 184 ~~~~----------~---d~~~----i~---~~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a~g 238 (438)
T 1wyu_A 184 EGGR----------T---PLPE----VG---EEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLSLG 238 (438)
T ss_dssp BTTB----------C---CCCC----CC---TTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTGGG
T ss_pred cCCc----------c---CHHH----hC---CCeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhhcc
Confidence 1110 0 2222 32 36788888776 88999987 999999999999999955 23222
Q ss_pred cccCCCccccccCCCCceeeh-hhhcC-----CCcceEEEEecHHHHHhhcCCC----------Cc-------------c
Q 011959 292 FRLAYGGAQEYFGVTPDLTTL-GKIIG-----GGLPVGAYGGRRDIMEMVAPAG----------PM-------------Y 342 (474)
Q Consensus 292 ~r~g~~~~~~~~g~~pdi~t~-sK~l~-----~G~~iG~~~~~~~i~~~~~~~~----------~~-------------~ 342 (474)
.. . ....+ ..|++++ +|.|+ +|.++|++++++++++.+.... .. +
T Consensus 239 ~~-~---~~~~~--g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~ 312 (438)
T 1wyu_A 239 VL-K---PPGAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRR 312 (438)
T ss_dssp TB-C---CHHHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHG
T ss_pred Cc-C---CCccC--CCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccch
Confidence 20 0 11122 3577765 46543 3568999999998877653210 00 0
Q ss_pred cccCCCC---ChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCc
Q 011959 343 QAGTLSG---NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNF 416 (474)
Q Consensus 343 ~~~t~~~---~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~ 416 (474)
..+|.+. +.++..++...++.+.+ ++..++..++.+++.+.|+++. ++.. ......+..+.+..+
T Consensus 313 ~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~---g~~~-~~~~~~~~~~~~~~~----- 383 (438)
T 1wyu_A 313 AKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVP---GVRP-FTPKPFFNEFALALP----- 383 (438)
T ss_dssp GGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCEE-CSCSSBCSEEEEECS-----
T ss_pred hcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEE-CCCCCeEEEEEEeCC-----
Confidence 1123332 22222222222443332 3445556666666666665430 2211 111122222222211
Q ss_pred ccccccchHHHHHHHHHHHHCCeEe--cccC---CcceEEecC--CcHHHHHHHHHHHHHHH
Q 011959 417 EDAKKSETTKFARFYRGMLEEGVYF--APSQ---FEAGFTSLA--HSSDDIQHTITAAEKVL 471 (474)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~Gv~v--~~~~---~~~~~~~~~--~t~e~i~~~l~~l~~~~ 471 (474)
....++.+.|.++||.+ .++. ...+|+++. +|++++++++++|++++
T Consensus 384 --------~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 384 --------KDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp --------SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred --------CCHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 01257889999999998 4432 346788765 79999999999998764
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.6e-14 Score=136.50 Aligned_cols=317 Identities=13% Similarity=0.017 Sum_probs=180.1
Q ss_pred CCCCCHHHHHHHHHHHHhc--CCCC----C-----CCHHHHHHHHHHHhhCCC--CCeEEE-eCCHHHHHHHHHHHhHhh
Q 011959 113 IGHADDQVLAALGETMKKG--TSFG----A-----PCLLENVLAEMVISAVPS--IEMVRF-VNSGTEACMGVLRLARAF 178 (474)
Q Consensus 113 lG~~~p~v~~a~~~~~~~~--~~~~----~-----~~~~~~~la~~l~~~~~~--~~~v~~-~~sGseA~~~al~~ar~~ 178 (474)
-+.-+++|++++.+.+.+. ...+ . ..+...+..+.+++.++. .++|+| +.|||++++.+++.....
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~ 100 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGL 100 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGG
T ss_pred cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCC
Confidence 3446899999999987541 1111 1 123455667777777752 257888 479999999999843211
Q ss_pred cCCcEEEEEeCCCCCCchhHHHhc--CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 179 TGRERIIKFEGCYHGHADPFLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~--g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
..+++++....+.++.. +...+. |..+..++.+...+. +++.++..+. +++++|.+..+.
T Consensus 101 ~~Gd~v~~~~~g~~~~~-~~~~a~~~G~~~~~~~~~~~~~~--------------~~~~~~~~i~---~~t~lV~~~h~e 162 (377)
T 3e77_A 101 KAGRCADYVVTGAWSAK-AAEEAKKFGTINIVHPKLGSYTK--------------IPDPSTWNLN---PDASYVYYCANE 162 (377)
T ss_dssp STTCEEEECCCSHHHHH-HHHHHTTTSEEEECSCCCSSSCS--------------CCCGGGCCCC---TTCSCEEEESEE
T ss_pred CCCCeEEEEECCHHHHH-HHHHHHHhCCceEEeccCCCcCC--------------CCChHHhccC---CCccEEEEeCcc
Confidence 12467776666666532 221111 211111111111111 2333333332 356777777666
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhc
Q 011959 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA 336 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~ 336 (474)
+.+|.+.| + +|+++|+++++|-+|+ + .......+.+++ ...+--|.+| .-.+|+++.++++++.+.
T Consensus 163 t~tG~~~p----i-----i~~~~~~~~~vD~~q~-~-g~~~id~~~~~~--~~~s~~K~~g-p~G~g~l~~~~~~l~~~~ 228 (377)
T 3e77_A 163 TVHGVEFD----F-----IPDVKGAVLVCDMSSN-F-LSKPVDVSKFGV--IFAGAQKNVG-SAGVTVVIVRDDLLGFAL 228 (377)
T ss_dssp TTTTEECS----S-----CCCCTTCCEEEECTTT-T-TSSCCCGGGCSE--EEEEGGGTTS-CTTCEEEEEETTSCSCCC
T ss_pred CchheEch----h-----hhccCCCEEEEEcccc-c-CCCCCchhhcCE--EEEecccccC-CCccEEEEEcHHHHhhcc
Confidence 77899998 4 5889999999999996 1 111233334442 3345669996 233889988888765544
Q ss_pred CCCCcc--------cccCCC-CChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCee---EEeee
Q 011959 337 PAGPMY--------QAGTLS-GNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAI---CGGYI 400 (474)
Q Consensus 337 ~~~~~~--------~~~t~~-~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~---~v~~~ 400 (474)
+..+.+ ...+++ .|..+..+..++|+.+.+. ...++.+++.++++++|.++. ++.. +....
T Consensus 229 ~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~---g~~~~~~~~~~r 305 (377)
T 3e77_A 229 RECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQ---GFYVCPVEPQNR 305 (377)
T ss_dssp TTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST---TSEECCSCGGGB
T ss_pred CCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC---CceecCCCHHHc
Confidence 221111 112333 3455566666888877654 344555556666666665431 2211 00112
Q ss_pred -ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 401 -SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 401 -g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+..+.|.+.+.. ++......+.+.+.++||.+.++. ...+|++ ...|++|||.+++.|++++++
T Consensus 306 s~~ivsf~~~~~~---------~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 306 SKMNIPFRIGNAK---------GDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp CSSEEEEEESSTT---------CCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCC---------CchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 223455543210 111222457777889999987762 2357876 455999999999999998864
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-12 Score=128.67 Aligned_cols=233 Identities=14% Similarity=0.018 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhhCC--CCCeEEEeCCHH-HHHHHHHHHhHhhcC-CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCC
Q 011959 139 LLENVLAEMVISAVP--SIEMVRFVNSGT-EACMGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 214 (474)
Q Consensus 139 ~~~~~la~~l~~~~~--~~~~v~~~~sGs-eA~~~al~~ar~~~~-~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 214 (474)
..++.+..++.+.++ .....+++|++| .++.+++..+|.... .+.||+. ..-|-+...++.+.|.+...+.....
T Consensus 98 ~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~-r~aHkSv~kAl~l~Gl~p~~v~~~~~ 176 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWP-RIDQKSCFKSMVTAGFEPVVIENVLE 176 (450)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEE-CCCCHHHHHHHHHTTCEEEEECCEEE
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEE-CCcHHHHHHHHHHcCCeeEEEEeeec
Confidence 345566666666553 345568999997 666667776665332 3555555 55898888888888875432211000
Q ss_pred CCCCCCCCCceEEccCCCHHHHHHHHhcCC-CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-
Q 011959 215 PGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 292 (474)
Q Consensus 215 ~g~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~- 292 (474)
. +...+ |++.|+++|++++ +.+++|++.|.+..+|.+.+ +++|.++|++||++|++||+|.+.
T Consensus 177 ~--------~~~~i---d~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~ 241 (450)
T 3bc8_A 177 G--------DELRT---DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQS 241 (450)
T ss_dssp T--------TEEEC---CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred C--------ccCCc---CHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhh
Confidence 0 11122 8999999998765 46788888887766667778 999999999999999999999654
Q ss_pred ccCCCccccccCC-CCceee--hhhhcCCCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--
Q 011959 293 RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-- 366 (474)
Q Consensus 293 r~g~~~~~~~~g~-~pdi~t--~sK~l~~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-- 366 (474)
+.......+.+.. ..|.++ .-|.+......+.+.. +++..+.+.. .+.. +-+.+| +.......+....+
T Consensus 242 ~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~---~~~g-~~s~Sp-sL~l~~~l~~~G~~g~ 316 (450)
T 3bc8_A 242 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPG-RASASP-SLDVLITLLSLGCSGY 316 (450)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCS-CBCSHH-HHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHH---Hhhc-CCcccH-HHHHHHHHHHHHHHHH
Confidence 3221111111111 347664 4588876556677765 5566655542 2211 112233 22222222222111
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 367 PGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
.+++++..++.+++++.|+++...++
T Consensus 317 ~~~i~~~~~~a~~l~~~l~~~~~~~g 342 (450)
T 3bc8_A 317 RKLLKERKEMFVYLSTQLKKLAEAHN 342 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcC
Confidence 33445557778899999988875555
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-12 Score=124.85 Aligned_cols=289 Identities=12% Similarity=0.056 Sum_probs=169.5
Q ss_pred CCCeEEEeCCHHHHHHHHHHHhHhh--cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC
Q 011959 154 SIEMVRFVNSGTEACMGVLRLARAF--TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (474)
Q Consensus 154 ~~~~v~~~~sGseA~~~al~~ar~~--~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 231 (474)
.....+++|++|.++.+++..+... .+.++||+ ...-|-+...++.+.|..+..+.. ... .+...+
T Consensus 133 ~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIv-pRn~HKSv~kAliL~Gl~Pv~V~p-~~d-------~~~~~i--- 200 (501)
T 3hl2_A 133 TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIW-PRIDQKSCFKSMITAGFEPVVIEN-VLE-------GDELRT--- 200 (501)
T ss_dssp TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEE-ECCCCHHHHHHHHHTTCEEEEECE-EEE-------TTEEEE---
T ss_pred CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEE-ecchHHHHHHHHHHcCCeEEEEee-eec-------ccccCC---
Confidence 3456888888887777766654222 13366665 677888888888888875432211 000 011222
Q ss_pred CHHHHHHHHhcCC-CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccc--cCCCC
Q 011959 232 DVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY--FGVTP 307 (474)
Q Consensus 232 d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~--~g~~p 307 (474)
|++.+|++|++++ +.+.+|+..+.+..++.+.+ +++|.++|++||++|++||+|... .....+..+. +| ..
T Consensus 201 d~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~G-rA 275 (501)
T 3hl2_A 201 DLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVG-RI 275 (501)
T ss_dssp CHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHS-CC
T ss_pred CHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcC-CC
Confidence 8999999999864 56777777765554455566 999999999999999999999544 3222111122 24 36
Q ss_pred ceeeh--hhhcCCCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHh-cC--CCHHHHHHHHHHHHH
Q 011959 308 DLTTL--GKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE--PGTYEYLNKITGELT 381 (474)
Q Consensus 308 di~t~--sK~l~~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~-~~--~~~~~~~~~~~~~l~ 381 (474)
|+++. -|.+-.-++.+.+.. ++++++.+.. .+- ++.+++|.. ....++..+ .+ .+++++..++.++|+
T Consensus 276 D~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~---~yP-Gr~S~Spsl--dl~~tLL~lGr~Gy~~ll~e~~ela~~L~ 349 (501)
T 3hl2_A 276 DAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISK---MYP-GRASASPSL--DVLITLLSLGSNGYKKLLKERKEMFSYLS 349 (501)
T ss_dssp CEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHH---TSC-SCBCSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEecccccceeecCceEEEeCCHHHHHHHHH---hCC-CCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77754 476542122222323 5667776652 221 233333322 223333322 22 677888889999999
Q ss_pred HHHHHHhhhcC-CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCe---Ee-cccC-----------
Q 011959 382 QGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV---YF-APSQ----------- 445 (474)
Q Consensus 382 ~~L~~~~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv---~v-~~~~----------- 445 (474)
++|+++...++ ...+.+...--+++.+..... ........+...|..++| -+ .++.
T Consensus 350 ~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~--------~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~ 421 (501)
T 3hl2_A 350 NQIKKLSEAYNERLLHTPHNPISLAMTLKTLDE--------HRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRG 421 (501)
T ss_dssp HHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCT--------TTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESS
T ss_pred HHHHHHHHhcChhhcCCCCCceeEEEecccccc--------cccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecC
Confidence 99999877555 222333333334454432110 111233567777778765 22 2221
Q ss_pred -------CcceEE----ecCCcHHHHHHHHHHHHHHHhh
Q 011959 446 -------FEAGFT----SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 -------~~~~~~----~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++.-++ ...++++|+|.++++|++++.+
T Consensus 422 ~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~ 460 (501)
T 3hl2_A 422 FMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKA 460 (501)
T ss_dssp TTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 111133 3677999999999999999864
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.9e-13 Score=132.89 Aligned_cols=315 Identities=13% Similarity=0.020 Sum_probs=175.1
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CC--------C-CCCHHHHHHHHHHHhhCCC--CCeEEE-eCCH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF--------G-APCLLENVLAEMVISAVPS--IEMVRF-VNSG 164 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~--------~-~~~~~~~~la~~l~~~~~~--~~~v~~-~~sG 164 (474)
+.|+|..+. .+ -+|+|++++.+.+.+.. .. + ...+...+..+.+++.++. .++|+| +.||
T Consensus 27 ~~yl~~agp---t~---~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~ 100 (386)
T 3qm2_A 27 QVFNFSSGP---AM---LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGG 100 (386)
T ss_dssp CCEECCSSS---CC---CCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCT
T ss_pred cCccccCCC---CC---CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Confidence 357765443 21 48999999987764311 00 0 0122334556666666642 246888 6899
Q ss_pred HHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCC-CCccCCCCCCCCCCCCCCCceEEcc---CC---CHHHHH
Q 011959 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTAP---FN---DVSALE 237 (474)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~-~~~~~~~~~~~g~~~~~~~~~~~~~---~~---d~~~le 237 (474)
|++++.+++.. +..+++++....+.++.. +....... .+. .+.++ +. ++++++
T Consensus 101 T~a~n~ai~~l--~~~gd~v~~~~~~~~~~~-~~~~a~~~G~v~-----------------~v~~~~~~~G~~~~~~~~~ 160 (386)
T 3qm2_A 101 RGQFAGVPLNL--LGDKTTADYVDAGYWAAS-AIKEAKKYCAPQ-----------------IIDAKITVDGKRAVKPMRE 160 (386)
T ss_dssp THHHHHHHHHH--CTTCCEEEEEESSHHHHH-HHHHHTTTSEEE-----------------EEECEEEETTEEEECCGGG
T ss_pred hHHHHHHHHhc--cCCCCeEEEEeCCHHHHH-HHHHHHHhCCeE-----------------EEecCcccCCCCCCchHHH
Confidence 99999999842 334567776666665532 22111111 111 11111 11 344455
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcc-cCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhc
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKII 316 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i-~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l 316 (474)
+.+. +++++|.+..+.+.+|.+ .| +++|. +|+++++|-+|+ + .......+.+++ ++.+--|.+
T Consensus 161 ~~l~---~~t~lV~~~h~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs-~-g~~pidv~~~~~--~~~s~hK~l 224 (386)
T 3qm2_A 161 WQLS---DNAAYLHYCPNETIDGIAIDE----TPDFG-----PEVVVTADFSST-I-LSAPLDVSRYGV--IYAGAQKNI 224 (386)
T ss_dssp CCCC---TTCSCEEECSEETTTTEECCC----CCCCC-----TTCCEEEECTTT-T-TSSCCCGGGCSE--EEEETTTTT
T ss_pred hhcC---CCCcEEEEECCcCCcCEecCc----hhhhc-----CCCEEEEEcccc-c-CCCCCCccccCE--EEEeccccc
Confidence 4444 367778877777778985 77 44443 899999999995 1 011233333442 445667999
Q ss_pred CCCcceEEEEecHHHHHhhcCCCCcc--------cccCC-CCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHH
Q 011959 317 GGGLPVGAYGGRRDIMEMVAPAGPMY--------QAGTL-SGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQG 383 (474)
Q Consensus 317 ~~G~~iG~~~~~~~i~~~~~~~~~~~--------~~~t~-~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~ 383 (474)
| .--+|++++++++.+.+.+..+.+ ....+ +.|..+..+..++|+.+.+. ...++.+++.++++++
T Consensus 225 G-P~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~ 303 (386)
T 3qm2_A 225 G-PAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGV 303 (386)
T ss_dssp C-CTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 6 233999999988865544321111 01111 34556666777888876543 3445555556666666
Q ss_pred HHHHhhhcCCee---EEeee-ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC--cceEEec--CC
Q 011959 384 IIDAGKKAGHAI---CGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTSL--AH 455 (474)
Q Consensus 384 L~~~~~~~~~~~---~v~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~~~--~~ 455 (474)
|+++ ++.. +.... ...+.|.+.+. ... ..+...|.++||.+..+.. ..+|+++ ..
T Consensus 304 l~~~----~~~~~~~~~~~rs~~iv~f~~~~~------------~~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~ 366 (386)
T 3qm2_A 304 IDNS----DFYRNDVAQANRSRMNVPFQLADN------------TLD-KVFLEESFAAGLHALKGHRVVGGMRASIYNAM 366 (386)
T ss_dssp HHTC----SSEECCBCGGGBCSSEEEEEESSG------------GGH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTS
T ss_pred HHHC----CCcccCCCHHHcCceEEEEECCCc------------ccc-HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCC
Confidence 6543 3211 10111 23344444210 111 4566678899999876522 3578864 45
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011959 456 SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~ 473 (474)
|++|||++++.|+++.++
T Consensus 367 t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 367 PIEGVKALTDFMIDFERR 384 (386)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 899999999999998764
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=126.97 Aligned_cols=303 Identities=12% Similarity=-0.040 Sum_probs=170.5
Q ss_pred CCHHHHHHHHHHHHhc--CCCC----CC-----CHHHHHHHHHHHhhCCC--CCeEEE-eCCHHHHHHHHHHHhHhhcCC
Q 011959 116 ADDQVLAALGETMKKG--TSFG----AP-----CLLENVLAEMVISAVPS--IEMVRF-VNSGTEACMGVLRLARAFTGR 181 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~--~~~~----~~-----~~~~~~la~~l~~~~~~--~~~v~~-~~sGseA~~~al~~ar~~~~~ 181 (474)
-+|+|++++.+.+.+. ...+ .+ .+...+..+.+++.+.. .++|+| ++|||++++.+++.. ..+
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~---~~~ 92 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNL---ALN 92 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH---CCS
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhc---CCC
Confidence 4899999999877531 1111 11 24456667777777752 347888 999999999999843 244
Q ss_pred cEEEEEeCCCCCCchhHH-HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCC
Q 011959 182 ERIIKFEGCYHGHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (474)
Q Consensus 182 ~~ii~~~~~yhg~~~~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (474)
+++.....+.+++..... ...|..+..++.+....+ . -+++. + |+ +++++|.+..+.+.+|
T Consensus 93 ~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~---------~---~~~~~-~--l~---~~t~lv~~~~~e~~tG 154 (361)
T 3m5u_A 93 GVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNF---------D---HIPRV-E--FS---DNADYAYICSNNTIYG 154 (361)
T ss_dssp SCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTS---------C---SCCCC-C--CC---TTSSEEEEESEETTTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCC---------C---cCChh-h--cC---CCCCEEEEeCCCCCcc
Confidence 555333334444321111 112332222111111000 0 02222 2 43 3567777766666678
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC-CccccccCCCCceee--hhhhcCCCcceEEEEecHHHHHhhcC
Q 011959 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAP 337 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~~i~~~~~~ 337 (474)
.+.+. +++ +|+++++|-+|+ + |. ....+ ..|+++ --|.+| .-.+|+++.++++.+.+.+
T Consensus 155 ~~~~~---------i~~-~~~~~~vD~~q~-~--g~~~id~~----~~d~~~~s~~K~~g-p~G~g~l~~~~~~~~~~~~ 216 (361)
T 3m5u_A 155 TQYQN---------YPK-TKTPLIVDASSD-F--FSRKVDFS----NIALFYGGVQKNAG-ISGLSCIFIRKDMLERSKN 216 (361)
T ss_dssp EECSS---------CCC-CSSCEEEECGGG-T--TSSCCCCT----TEEEEEEETTTTSS-CTTCEEEEEEHHHHHHHHT
T ss_pred eeCCc---------ccc-cCCEEEEEcccc-c--CCCCCCcc----cCCEEEEechhccC-CCccEEEEEcHHHHhhhcC
Confidence 88662 333 499999999996 1 11 11111 236664 459996 2238999999999877653
Q ss_pred -CCCcc--------cccCC-CCChHHHHHHHHHHHHhcCC-C---HHHHHHHHHHHHHHHHHHHhhhcC-CeeE-E-e-e
Q 011959 338 -AGPMY--------QAGTL-SGNPLAMTAGIHTLKRLKEP-G---TYEYLNKITGELTQGIIDAGKKAG-HAIC-G-G-Y 399 (474)
Q Consensus 338 -~~~~~--------~~~t~-~~~~~~~aaa~aal~~~~~~-~---~~~~~~~~~~~l~~~L~~~~~~~~-~~~~-v-~-~ 399 (474)
..+.+ ...++ +.|..+..+..++|+.+.+. + ..++.+++.++++++|+++ + +... . + .
T Consensus 217 ~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~----~g~~~~~~~~~~ 292 (361)
T 3m5u_A 217 KQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLS----NGFYKGHADKKD 292 (361)
T ss_dssp CCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTS----TTSEEESSCGGG
T ss_pred CCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHC----CCeeeccCCHHH
Confidence 11111 11222 34556666777889887664 2 3445555556666666543 3 2110 0 0 1
Q ss_pred -eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC--cceEEec--CCcHHHHHHHHHHHHHHHhh
Q 011959 400 -ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTSL--AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 400 -~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~~~--~~t~e~i~~~l~~l~~~~~~ 473 (474)
....+.|.+.+. .... ..+...|.++||.+..+.. ..+|+++ ..|++|||++++.|+++.++
T Consensus 293 rs~~ivsf~~~~~-----------~~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 293 RSLMNVSFNIAKN-----------KDLE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp BCSSEEEEEESSC-----------TTHH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCc-----------hhhh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 122344444210 0111 3577888899999876622 3578764 45999999999999998764
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-07 Score=93.12 Aligned_cols=314 Identities=15% Similarity=0.094 Sum_probs=160.0
Q ss_pred CCHHHHHHHHHHHHhcC--------CCCCC---CHHHHHHHHHHHhhCC-C-CCe-E-EEeCCHHHHHHHHHHHhHhhcC
Q 011959 116 ADDQVLAALGETMKKGT--------SFGAP---CLLENVLAEMVISAVP-S-IEM-V-RFVNSGTEACMGVLRLARAFTG 180 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~--------~~~~~---~~~~~~la~~l~~~~~-~-~~~-v-~~~~sGseA~~~al~~ar~~~~ 180 (474)
..|.|.+|+-..+.+-- .|++. ++.+.-..++..+.|+ . .++ | +=..||+.||.++... .+.+
T Consensus 66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~A--ll~P 143 (490)
T 3ou5_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA--LLQP 143 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH--HCC-
T ss_pred CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHH--HcCC
Confidence 45777777665554311 11211 2233333345556674 2 221 1 2345899999999983 3345
Q ss_pred CcEEEEEeCCCCCCchhH-------HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011959 181 RERIIKFEGCYHGHADPF-------LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (474)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~-------~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (474)
+++|+.++-..-|+.... ...+|......+++ ...+...+ |.+.++++.+++ ++++||+-
T Consensus 144 GD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~--------vd~~t~~I---Dyd~~~~~A~~~--kPklIi~G 210 (490)
T 3ou5_A 144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYK--------LNPKTGLI---DYNQLALTARLF--RPRLIIAG 210 (490)
T ss_dssp CCCEECBC----------------------------CBC--------EETTTTEE---CHHHHHHHHHHH--CCSEEEEC
T ss_pred CCEEEecccCCCCcccccccCCCcccccccccccccccc--------cCCCCCcc---cHHHHHHHHhhc--CCCeEEEC
Confidence 677777754322221111 01111100000000 00000011 899999988876 56777775
Q ss_pred cccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCceee--hhhhcCCCcceEEEEecH
Q 011959 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRR 329 (474)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~ 329 (474)
...- -...+ +++++++|++.|++|++|=+| +|+ -.|. +.. -+.. .|++| .-|+|.| -|-|.++.++
T Consensus 211 ~SaY--~r~id----~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~-~ps-P~~~-ADvVTtTTHKTLrG-PrGG~Il~~~ 280 (490)
T 3ou5_A 211 TSAY--ARLID----YARMREVCDEVKAHLLADMAHISGLVAAKV-IPS-PFKH-ADIVTTTTHKTLRG-ARSGLIFYRK 280 (490)
T ss_dssp CSSC--CSCCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTS-SCC-GGGT-CSEEEEESSSTTCS-CSCEEEEEEC
T ss_pred CccC--ccccC----HHHHHHHHhhcccEEEechhhhhhhhcccc-cCC-cccc-ceEEeccccccccC-CCceEEEecc
Confidence 4221 22345 999999999999999999999 777 3332 111 1222 47775 5699974 4667777665
Q ss_pred ---------------HHHHhhcCCCCcccccCCCCChHHHHHHHH-HHHH-hcC--CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 330 ---------------DIMEMVAPAGPMYQAGTLSGNPLAMTAGIH-TLKR-LKE--PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 330 ---------------~i~~~~~~~~~~~~~~t~~~~~~~~aaa~a-al~~-~~~--~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
++.+.+.. ..+- +..+++-.-..||.+ ++.. +.. .++.+++.++.+.|.+.|.+.+.+
T Consensus 281 ~~~~~~~k~~~~~~~~~~kkin~--aVFP-g~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~ 357 (490)
T 3ou5_A 281 GVKAVDPKTGREIPYTFEDRINF--AVFP-SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYS 357 (490)
T ss_dssp SEEEECC--CCEEECCCHHHHHH--HHTT-TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred ccccccccccchhHHHHHHHHHh--hcCc-cccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 23334431 1111 122333333333332 2433 322 456777778888888888765322
Q ss_pred cCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---------CcceEE------ecCC
Q 011959 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFT------SLAH 455 (474)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------~~~~~~------~~~~ 455 (474)
++. -.-.-.++.+++.... .......+.|-+.||.+.... ...+|+ ....
T Consensus 358 --vvs-GgTdnHlvLvDl~~~g------------~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~ 422 (490)
T 3ou5_A 358 --LVS-GGTDNHLVLVDLRPKG------------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQF 422 (490)
T ss_dssp --EGG-GSCSSSEEEEECGGGT------------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTC
T ss_pred --eec-CCCCceEEEEeccccC------------CCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCC
Confidence 110 0011224455543211 112345566667899885321 124676 2567
Q ss_pred cHHHHHHHHHHHHHHHh
Q 011959 456 SSDDIQHTITAAEKVLR 472 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~ 472 (474)
.++|++++.+.|.+++.
T Consensus 423 ~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 423 REDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 89999999998888763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 474 | ||||
| d2gsaa_ | 427 | c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase | 1e-143 | |
| d1sffa_ | 425 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 2e-79 | |
| d1z7da1 | 404 | c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla | 9e-67 | |
| d2byla1 | 404 | c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu | 3e-66 | |
| d1vefa1 | 387 | c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a | 8e-65 | |
| d1zoda1 | 431 | c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P | 1e-46 | |
| d1s0aa_ | 429 | c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona | 1e-41 | |
| d1ohwa_ | 461 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 2e-27 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 2e-14 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 4e-13 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 5e-13 | |
| d1fc4a_ | 401 | c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E | 5e-11 | |
| d1bs0a_ | 383 | c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a | 4e-07 | |
| d1v72a1 | 345 | c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps | 8e-07 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 1e-06 |
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Score = 416 bits (1069), Expect = e-143
Identities = 308/427 (72%), Positives = 359/427 (84%)
Query: 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGS 107
F KS+E F A++LMPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+
Sbjct: 1 FKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGT 60
Query: 108 WGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEA 167
WGPAI GHA +V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEA
Sbjct: 61 WGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEA 120
Query: 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT 227
CM VLRL RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT
Sbjct: 121 CMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLT 180
Query: 228 APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
P+ND+ A++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDE
Sbjct: 181 TPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 240
Query: 288 VMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 347
VMTGFR+AYGG QE FGVTPDLTTLGKIIGGGLPVGAYGG+R+IM++VAPAGPMYQAGTL
Sbjct: 241 VMTGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTL 300
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407
SGNPLAMTAGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFF
Sbjct: 301 SGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFF 360
Query: 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 467
FTEGPV+N+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA
Sbjct: 361 FTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAA 420
Query: 468 EKVLRQI 474
V+ +
Sbjct: 421 RTVMSAL 427
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Score = 251 bits (642), Expect = 2e-79
Identities = 110/439 (25%), Positives = 171/439 (38%), Gaps = 33/439 (7%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
++E + +P GV PI D + +WD++G EY+D+ G
Sbjct: 2 SNKELMQRRSQAIPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIAVL 52
Query: 112 IIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVPSIEM--VRFVNSGTE 166
GH +V+AA+ +KK + L E++ VP V +G+E
Sbjct: 53 NTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSE 112
Query: 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG------SGVATLGLPDSPGVPKG 220
A +++ARA T R I F G YHG L G +G+ + +
Sbjct: 113 AVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 172
Query: 221 ATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280
+ + +IAAI++EPV G GF A P F+ +R + E+G
Sbjct: 173 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 232
Query: 281 ALLIFDEVMTG-FRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG 339
+LI DEV +G R A E GV PDLTT K I GG P+ GR ++M+ VAP G
Sbjct: 233 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 292
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399
GT +GNP+A A + LK ++ + N + +L G++ +K
Sbjct: 293 ---LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRG 349
Query: 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG----FTSLAH 455
+ M E +N DAK A ++G+ L
Sbjct: 350 LGAMIAIELFEDGDHNKPDAK-----LTAEIVARARDKGLILLSCGPYYNVLRILVPLTI 404
Query: 456 SSDDIQHTITAAEKVLRQI 474
I+ + + +
Sbjct: 405 EDAQIRQGLEIISQCFDEA 423
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 217 bits (554), Expect = 9e-67
Identities = 82/404 (20%), Positives = 148/404 (36%), Gaps = 33/404 (8%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGAPCLL 140
P+V KG ++D++ Y D++ ++ GH +L A+ K T A +
Sbjct: 22 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 81
Query: 141 ENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 200
+ E ++ + + V +N+G EA +L R + + +
Sbjct: 82 PLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYE----VKKIPENMAKIVVCK 137
Query: 201 KAGSGVATLGLPDSPGVPKGATYE-----TLTAPFNDVSALENLFENNKGEIAAIILEPV 255
SG + S + + P++D+ ALE ++ + A I+EP+
Sbjct: 138 NNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKD--PNVCAFIVEPI 195
Query: 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK 314
G +G I P ++L + I K+ L + DEV TG R ++ V PD+ LGK
Sbjct: 196 QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGK 255
Query: 315 IIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 373
+ GG P+ A DIM ++ P T GNPLA + + L L E
Sbjct: 256 ALSGGHYPISAVLANDDIMLVIKPGE---HGSTYGGNPLAASICVEALNVLINEKLCENA 312
Query: 374 NKITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFEDAKKSETTKFARF 430
K+ G + + K + + G + F V + K +
Sbjct: 313 EKLGGPFLENLKRELKDSKIV---RDVRGKGLLCAIEFKNELVNVLDICLKLKENGL--I 367
Query: 431 YRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
R + ++ + P L + + + K ++
Sbjct: 368 TRDVHDKTIRLTP--------PLCITKEQLDECTEIIVKTVKFF 403
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 216 bits (550), Expect = 3e-66
Identities = 88/396 (22%), Positives = 160/396 (40%), Gaps = 22/396 (5%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P+ + KG ++WD++G +Y D++ S GH +++ AL + K T
Sbjct: 24 PVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN 83
Query: 142 NV-LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF-EGCYHGHADPFL 199
+ E I+ + + V +N+G EA +LAR + + I+ + A F
Sbjct: 84 VLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFW 143
Query: 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259
+ S +++ P S P+ND+ ALE ++ +AA ++EP+ G +
Sbjct: 144 GRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEA 201
Query: 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGG 318
G + P P +L +R + + L I DE+ TG R A +Y V PD+ LGK + G
Sbjct: 202 GVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSG 261
Query: 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 378
GL + D + + P T GNPL I L+ L+E E +K+
Sbjct: 262 GLYPVSAVLCDDDIMLTIK--PGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGI 319
Query: 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 438
L ++ A+ G + K+++ + + + G
Sbjct: 320 ILRNELMKLPSDVVTAVRG--KGLLNAIVI-----------KETKDWDAWKVCLRLRDNG 366
Query: 439 VYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLR 472
+ P+ + + L D+++ +I K +
Sbjct: 367 LLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTIL 402
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Score = 212 bits (540), Expect = 8e-65
Identities = 111/420 (26%), Positives = 177/420 (42%), Gaps = 48/420 (11%)
Query: 60 AKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQ 119
A++ + GV + ++ +G+ +WD +GNEYID VG +G A +GH + +
Sbjct: 7 AEKTLDSGVYNK---------HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPE 57
Query: 120 VLAALGETMKK--GTSFGAPCLLENVLAEMVISAVPSIEMVRFVN-SGTEACMGVLRLAR 176
V+ A+ + P + + + +P F SGTEA L+ AR
Sbjct: 58 VVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFAR 117
Query: 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 236
A TGR++ + + G L + + P P V P+NDV AL
Sbjct: 118 AHTGRKKFVAAMRGFSGRTMGSL--SVTWEPKYREPFLPLVE-----PVEFIPYNDVEAL 170
Query: 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 295
+ + E AA+ILEPV G G P+FL A R IT+E GALLI DE+ TG R
Sbjct: 171 KRAVDE---ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG 227
Query: 296 YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 355
A E+FG+ PD+ TL K +GGG+P+G R ++ + G T GNPLAM
Sbjct: 228 KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGG---HGTTFGGNPLAMA 284
Query: 356 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 415
AG+ ++ L+ +E ++ + + + G G+
Sbjct: 285 AGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREVRG---MGLMVGLE------- 334
Query: 416 FEDAKKSETTKFARFYRGML----EEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVL 471
++ + + +R + + F P L +D++ + A VL
Sbjct: 335 LKEKAAPYIARLEKEHRVLALQAGPTVIRFLP--------PLVIEKEDLERVVEAVRAVL 386
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Score = 164 bits (416), Expect = 1e-46
Identities = 93/415 (22%), Positives = 162/415 (39%), Gaps = 32/415 (7%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P++ + KGS ++D DG +D+ A++GH ++++ +GE K + L
Sbjct: 24 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 83
Query: 142 NV--LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 198
V LA + + P ++ +++G E+ +R+A+ TG+ I+ F +HG
Sbjct: 84 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAA 143
Query: 199 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS----------ALENLFENNKGEIA 248
S P + G T F A + + + G +A
Sbjct: 144 ASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLA 203
Query: 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-FRLAYGGAQEYFGVTP 307
A I EP++ + G I ++ A++R + G LLI DE TG R A + GVTP
Sbjct: 204 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTP 263
Query: 308 DLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367
D+ TL K +G GLP+ A I E A T +PL G+ L ++
Sbjct: 264 DILTLSKTLGAGLPLAAIVTSAAIEER-AHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD 322
Query: 368 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFEDAKKSET 424
G N + L +G++D ++ G + G + G + K+
Sbjct: 323 GLVARANVMGDRLRRGLLDLMERFDCI---GDVRGRGLLLGVEIVKDR-----RTKEPAD 374
Query: 425 TKFARFYRGMLEEGVYFAPSQFEAGFT------SLAHSSDDIQHTITAAEKVLRQ 473
A+ R + G+ Q L S D+I ++ + + +
Sbjct: 375 GLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Score = 151 bits (381), Expect = 1e-41
Identities = 96/415 (23%), Positives = 160/415 (38%), Gaps = 42/415 (10%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPC- 138
S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 26 VYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 139 -LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYH 192
+ ++V +E V +SG+ A +++A + R+R + F YH
Sbjct: 86 APAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYH 145
Query: 193 GHADPFLVKAGSGVATLGL-----PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247
G + + L P++ P + D+ L ++ EI
Sbjct: 146 GDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEI 205
Query: 248 AAIILEPVVGNSG-FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 305
AA+I+EP+V +G P++L IR+I G LLI DE+ TGF R A E+ +
Sbjct: 206 AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEI 265
Query: 306 TPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLK 362
PD+ LGK + GG + + A R++ E ++ AG T GNPLA A +L
Sbjct: 266 APDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLA 325
Query: 363 RLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 422
L+ + + I +L + + A + + G G T PV
Sbjct: 326 ILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRVLGAIGVVETTHPV--------- 374
Query: 423 ETTKFARFYRGMLEEGVYFAPSQFEAGFT-----SLAHSSDDIQHTITAAEKVLR 472
A + +E+GV+ P G +Q A + ++
Sbjct: 375 ---NMAALQKFFVEQGVWIRP----FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 112 bits (280), Expect = 2e-27
Identities = 70/485 (14%), Positives = 126/485 (25%), Gaps = 105/485 (21%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
+S E + ++ +G+++ D+DGN +D
Sbjct: 16 RSRELMKQLNIIQNAEAVHF----------FCNYEESRGNYLVDVDGNRMLDLYSQISSI 65
Query: 112 IIGHADDQVLAALGETMKKGTSFGAPCL-------LENVLAEMVIS-AVPSIEMVRFVNS 163
IG++ ++ + + T P L L E ++S A + + +
Sbjct: 66 PIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMAC 125
Query: 164 GTEACMGVLRLARAF--------------------------TGRERIIKFEGCYHGHADP 197
G+ + + + I+ F G +HG
Sbjct: 126 GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMG 185
Query: 198 FLVKAGSGVATLGLPDSPGVPK--------------GATYETLTAPFNDVSALENLFENN 243
L S S P + +V L +
Sbjct: 186 CLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKK 245
Query: 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQ 300
K +A II+EP+ G DF +R I++++G + DEV TG +
Sbjct: 246 KKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEH 305
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
D+ T K + G E P P T G+P
Sbjct: 306 WGLDDPADVMTFSKKM--------MTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEV 357
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFE 417
+ +K L G++D + I + G F + + N
Sbjct: 358 INIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFI--SRVRGRGTFCSFDTPDESIRN-- 413
Query: 418 DAKKSETTKFARFYRGMLEEGV----------YFAPSQFEAGFTSLAHSSDDIQHTITAA 467
+ +GV F P +L +
Sbjct: 414 -----------KLISIARNKGVMLGGCGDKSIRFRP--------TLVFRDHHAHLFLNIF 454
Query: 468 EKVLR 472
+L
Sbjct: 455 SDILA 459
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 73.0 bits (178), Expect = 2e-14
Identities = 53/445 (11%), Positives = 109/445 (24%), Gaps = 58/445 (13%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHAD-------DQVLAALGETMKKGTS 133
+P ++ E P ++ D D A+ ++M+
Sbjct: 5 EPFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMM 64
Query: 134 FGAPCLLE----NVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRER 183
G LAE V + + + G A + + R +
Sbjct: 65 RGDEAFSGSRSYYALAESV-KNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSK 123
Query: 184 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF-EN 242
++ F + G V + + ++ ++ D+ LE E
Sbjct: 124 MVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFK----GNFDLEGLERGIEEV 179
Query: 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-------MTGFRLA 295
+ I+ ++G L A+ I K+ ++ D R A
Sbjct: 180 GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREA 239
Query: 296 YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP----------AGPMYQAG 345
+T + ++ A ++ M + Q G
Sbjct: 240 EYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEG 299
Query: 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 405
+ L A L + ++L Q ++D ++ G F
Sbjct: 300 FPTYGGLEGGAMERLAVGLYDGMNLDWLAYRI-AQVQYLVDGLEEIGVVCQQAGGHAAFV 358
Query: 406 ---FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG------------- 449
P F + R + E G + + G
Sbjct: 359 DAGKLLPHIPADQFPAQALACELYKVAGIRAV-EIGSFLLGRDPKTGKQLPCPAELLRLT 417
Query: 450 FTSLAHSSDDIQHTITAAEKVLRQI 474
++ + I A + V
Sbjct: 418 IPRATYTQTHMDFIIEAFKHVKENA 442
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 68.3 bits (165), Expect = 4e-13
Identities = 56/366 (15%), Positives = 92/366 (25%), Gaps = 42/366 (11%)
Query: 116 ADDQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 172
+++ A+ + +G LE + AE E FV SGT +
Sbjct: 12 PTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETF-----GKEAALFVPSGTMGNQVSI 66
Query: 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232
+ + +A L VP
Sbjct: 67 MAHTQRGDEVILEADSHIFWYEVG--------AMAVLSGVMPHPVPGKNGAMDPDDVRKA 118
Query: 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
+ + + I +E SG + + I I KE+G + D
Sbjct: 119 I----RPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFN 174
Query: 293 RLA--YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350
+EY G + G RD +E A M G
Sbjct: 175 ASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAG 234
Query: 351 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410
LA I K K E + + K+ G+++ + T+
Sbjct: 235 VLAAAGIIALTK-------MVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTD 287
Query: 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAE 468
N F + GV T S +DI+ + E
Sbjct: 288 NLKVNAHG-----------FIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFE 336
Query: 469 KVLRQI 474
K+ R+
Sbjct: 337 KLFRKF 342
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 68.4 bits (166), Expect = 5e-13
Identities = 48/412 (11%), Positives = 101/412 (24%), Gaps = 45/412 (10%)
Query: 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIE 156
YID + G + + E ++ L++ E+ + +
Sbjct: 40 SSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYD---LKDKAKELF-----NYD 91
Query: 157 MVRFVNSGTEACMGVLRLARAF---TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 213
+ + G A + + + G+ + F +H V+ A + +
Sbjct: 92 YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTE 151
Query: 214 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 273
+ + + ++ I AI+ ++G L +
Sbjct: 152 KAFDSETYDDWKGDFDIKKLKEN--IAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVY 209
Query: 274 RITKENGALLIFDEVMTGFRLAYGG--------------AQEYFGVTPDLTTLGKIIGGG 319
I K++G ++ D + + + LT K
Sbjct: 210 EIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLL 269
Query: 320 LPVGAYGGRRD--IMEMVAPAGPMYQAGTLSGNP--LAMTAGIHTLKRLKEPGTYEYLNK 375
G R + I + + G M A + L+ E Y
Sbjct: 270 NIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIG 329
Query: 376 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 435
L + +AG + G + + P F R +
Sbjct: 330 QVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAV- 388
Query: 436 EEGVYFAPSQFEAGFTSLAHSS-------------DDIQHTITAAEKVLRQI 474
E G + G A D + + A + +
Sbjct: 389 EIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 440
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Score = 62.1 bits (150), Expect = 5e-11
Identities = 59/410 (14%), Positives = 116/410 (28%), Gaps = 61/410 (14%)
Query: 84 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADD-QVLAALGETMKK-GTSFGAPCLLE 141
+ S + + + DG+ I++ + +G A+ ++AA M G + +
Sbjct: 30 IITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFIC 86
Query: 142 NVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201
++ F+ A G D +
Sbjct: 87 GTQDSHKEL---EQKLAAFLGMEDAILYSSCFDANGGLFE--------TLLGAEDAIISD 135
Query: 202 AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 261
A + + + D + K Y ++ A I + V G
Sbjct: 136 ALNHASII---DGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGV 192
Query: 262 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA--QEYFGVTPD---LTTLGKII 316
I L + + + AL++ D+ + G EY V +T
Sbjct: 193 I----ANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKA 248
Query: 317 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 376
GG G R++++E + Y + + + L
Sbjct: 249 LGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWAN 308
Query: 377 TGELTQGIIDAG---KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433
+ + + AG A HAI I M G + +F R
Sbjct: 309 ARQFREQMSAAGFTLAGADHAI----IPVMLG-----------------DAVVAQKFARE 347
Query: 434 MLEEGVYFAPSQFEAG---------FTSLAHSSDDIQHTITAAEKVLRQI 474
+ +EG+Y + S AH+ + I + A ++ +Q+
Sbjct: 348 LQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Score = 49.5 bits (117), Expect = 4e-07
Identities = 47/413 (11%), Positives = 103/413 (24%), Gaps = 74/413 (17%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYI-----DYVGSWGPAIIGHADDQVLAALGETMKK-GTSF 134
+ G + D +Y+ DY+G + H Q++ A + ++ G
Sbjct: 21 RRYPVAQGAGRWL-VADDRQYLNFSSNDYLG------LSH-HPQIIRAWQQGAEQFGIGS 72
Query: 135 GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194
G V+ + + + G R + F + +
Sbjct: 73 GGS---------------------GHVSGYSVVHQALEEELAEWLGYSRALLFISGFAAN 111
Query: 195 ADPFLVKAGSGVATLGLPDSPGVPKGATYET----LTAPFNDVSALENLFENNKGEIAAI 250
S A + NDV+ L L + +
Sbjct: 112 QAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMV 171
Query: 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL--AYGGAQEYFGVTPD 308
+ E V G AP + +++T+++ L+ D+ + G+ V P+
Sbjct: 172 VTEGVFSMDGDSAPLAEI----QQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPE 227
Query: 309 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
L + G G+ A + + + T + +
Sbjct: 228 LLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPA--QAQALRASLAVIRSD 285
Query: 369 TYEYLNKITGELTQGIIDAGKKAGHAICGG--YISGMFGFFFTEGPVYNFEDAKKSETTK 426
+ + L + + I + V + A +
Sbjct: 286 EGDARREKLAALITRFRAGVQDLPFTLADSCSAIQPLI--------VGDNSRALQ----- 332
Query: 427 FARFYRGMLEEGVYFAPSQFEAG---------FTSLAHSSDDIQHTITAAEKV 470
+ ++G + + + AH DI +
Sbjct: 333 ---LAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Score = 48.7 bits (114), Expect = 8e-07
Identities = 44/364 (12%), Positives = 73/364 (20%), Gaps = 39/364 (10%)
Query: 113 IGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 172
I A +V AL + L + V V +GT A L
Sbjct: 12 IAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCL 71
Query: 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232
G + +
Sbjct: 72 SAMTPPWGNIYCHPASHINNDECGAPEFFSN-----------GAKLMTVDGPAAKLDIVR 120
Query: 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
+ + + D + AI + K + L D
Sbjct: 121 LRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFAN 180
Query: 293 RLAYGG---AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
L G A+ + D + G G L A + S
Sbjct: 181 ALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSSK 240
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
L N L QG+ G + GG + +
Sbjct: 241 MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLE---GLGGVEVLGGTEANILFCRLD 297
Query: 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF----TSLAHSSDDIQHTIT 465
+L+ G F ++ TS A +++D+ H +
Sbjct: 298 S------------------AMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLN 339
Query: 466 AAEK 469
Sbjct: 340 QVRL 343
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 48.0 bits (113), Expect = 1e-06
Identities = 35/340 (10%), Positives = 87/340 (25%), Gaps = 24/340 (7%)
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197
L N + E + T + + A ++ + H
Sbjct: 112 YALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIK 171
Query: 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257
+ G + + V G V +EN + + +
Sbjct: 172 AVSFVGMNMRLV-----ETVLDGDRVYV------PVEDIENAIKKEIELGNRPCVLSTLT 220
Query: 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY---FGVTPDLTTLGK 314
+ I +I + I + Y + + V +++ K
Sbjct: 221 FFPPRNSDD--IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDK 278
Query: 315 IIGGGLPVGA-YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 373
+ + G Y + ++ ++ + P + + + + ++ +
Sbjct: 279 NLLTPIGGGLVYSTDAEFIKEISLSYPGRAS---ATPVVNTLVSLLSMGSKNYLELVKNQ 335
Query: 374 NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433
L + + D KK G PV T R +
Sbjct: 336 KNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGP-RGIKK 394
Query: 434 MLEEGVYFAPSQFEAGFT---SLAHSSDDIQHTITAAEKV 470
G + + ++ ++DI ++++ EK+
Sbjct: 395 TDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 434
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 474 | |||
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 100.0 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 100.0 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.97 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.97 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.97 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.96 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.96 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.95 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.95 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.95 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.95 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.95 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.95 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.94 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.94 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.94 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.94 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.94 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.93 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.93 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.93 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.91 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.91 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.9 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.9 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.9 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.89 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.89 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.89 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.86 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.86 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.86 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.85 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.85 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.82 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.81 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.79 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.79 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.75 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.73 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.72 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.72 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.71 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.69 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.68 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.66 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.63 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.6 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.59 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.59 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.57 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.57 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.56 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.56 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.56 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.5 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.5 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.49 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.49 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.47 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.44 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.43 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.42 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.4 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.36 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.32 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.28 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.27 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.21 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.17 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.14 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.12 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.04 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 98.84 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 98.81 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.77 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.71 |
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=100.00 E-value=1.5e-79 Score=617.57 Aligned_cols=427 Identities=72% Similarity=1.211 Sum_probs=395.2
Q ss_pred CCchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHH
Q 011959 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127 (474)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~ 127 (474)
+.+.+|+++++++++++|+|+++++|.|+.++++|+++++++|+|+||.|||+||||.++++++++||+||+|++|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~~i~~a~G~~l~D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~ 80 (427)
T d2gsaa_ 1 FKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVA 80 (427)
T ss_dssp CCCHHHHHHHHHHHHHSGGGSSSGGGCCTTTSSCCCCEEEEEBTEEEETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHhhcCCCCCCCccccccCCCCCcEEEEeecCEEEECCCCEEEEechhHHHHhccCCcHHHHHHHHHH
Confidence 35788999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCc
Q 011959 128 MKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVA 207 (474)
Q Consensus 128 ~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~ 207 (474)
++++..+..+.....++++++.+..|..++++|++||+||++.|+|+||.+++|.+||.++++|||++.++++.++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~ 160 (427)
T d2gsaa_ 81 MEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVA 160 (427)
T ss_dssp HTTCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHH
T ss_pred HHhcCccccchhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCccc
Confidence 99977666778888999999999998889999999999999999999999999999999999999999999988887665
Q ss_pred cCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 011959 208 TLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287 (474)
Q Consensus 208 ~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DE 287 (474)
....|..+++......+...++++|++.+|++++++++++++||+||+++++|.+.|+++||++|+++|++||++||+||
T Consensus 161 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DE 240 (427)
T d2gsaa_ 161 TLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 240 (427)
T ss_dssp HTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred ccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeecc
Confidence 55566666666666677889999999999999999888999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCC
Q 011959 288 VMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367 (474)
Q Consensus 288 v~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 367 (474)
|++|||+|.+++++++|+.||++++||+++||+|+|++++++++++.+.+.+...+++||++||++|+|++++|++++++
T Consensus 241 v~tG~r~g~~~~~~~~gi~PDi~~~gK~lggG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~ 320 (427)
T d2gsaa_ 241 VMTGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQP 320 (427)
T ss_dssp TTTBTTTBTTCHHHHTTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTST
T ss_pred ccccceecccchHHhcCCCHHHHhhhhccCCCcceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhh
Confidence 99999889999999999999999999999999999999999999999886666788899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc
Q 011959 368 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (474)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 447 (474)
++.+++++++++|++.|+++..+++....+.+.|.|+++.+...++.++.+....+......+...|+++||++.|++..
T Consensus 321 ~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~~~ 400 (427)
T d2gsaa_ 321 GTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFE 400 (427)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTS
T ss_pred hHHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCCCc
Confidence 99999999999999999999999998888899999999999877777776666667777788999999999999998776
Q ss_pred ceEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 448 AGFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 448 ~~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
.++++++||++|||+++++|++++++|
T Consensus 401 ~~~~~l~~Te~dId~~l~al~~al~~L 427 (427)
T d2gsaa_ 401 AGFTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp CEECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred ceeCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 677899999999999999999999875
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-70 Score=552.11 Aligned_cols=399 Identities=27% Similarity=0.417 Sum_probs=342.6
Q ss_pred hHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc
Q 011959 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG 131 (474)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~ 131 (474)
+++++++|+++.+|+|+..+ +|+++++++|+|+||.|||+||||.+++++++|||+||+|++|+++|++++
T Consensus 2 ~~~~l~~r~~~~~~~g~~~~---------~P~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~ 72 (425)
T d1sffa_ 2 SNKELMQRRSQAIPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL 72 (425)
T ss_dssp CHHHHHHHHHHHSCTTBCCS---------EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC
T ss_pred chHHHHHHHHHhcCCCCCCC---------CCceEEEEecCEEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhc
Confidence 57899999999999998654 389999999999999999999999999999999999999999999999985
Q ss_pred CC---CCCCCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCC
Q 011959 132 TS---FGAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (474)
Q Consensus 132 ~~---~~~~~~~~~~la~~l~~~~~~--~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (474)
.. ....++...+|+++|.+..|+ .++++|++||+||++.|+|+||.+++|.+||.++++|||++++++..++...
T Consensus 73 ~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~ 152 (425)
T d1sffa_ 73 SHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVN 152 (425)
T ss_dssp SCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCT
T ss_pred CCcccccccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCC
Confidence 42 234578899999999999983 5799999999999999999999999999999999999999999999887643
Q ss_pred ccCCC-CCCCCCCCCCCCceEEccCC----C------HHHHHHHH--hcCCCCeEEEEEccccCCCCcccCCHHHHHHHH
Q 011959 207 ATLGL-PDSPGVPKGATYETLTAPFN----D------VSALENLF--ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 273 (474)
Q Consensus 207 ~~~~~-~~~~g~~~~~~~~~~~~~~~----d------~~~le~~l--~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~ 273 (474)
..... +..+ ......+++ + .+..++.+ ....+++++||+||+++++|.+.|+++||++|+
T Consensus 153 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~ 225 (425)
T d1sffa_ 153 PYSAGMGLMP-------GHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLR 225 (425)
T ss_dssp TTTTTSCCCC-------SSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHH
T ss_pred cccCCccccc-------CCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHH
Confidence 22111 1111 112222221 1 11222222 234568999999999999999999999999999
Q ss_pred HHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChH
Q 011959 274 RITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352 (474)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~ 352 (474)
++|++||++||+|||+||| |+|.+++++++|+.||++|+||++++|+|+|++++++++++.+. ...+++||++||+
T Consensus 226 ~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~gK~l~gG~P~~av~~~~~i~~~~~---~~~~~~T~~gnpl 302 (425)
T d1sffa_ 226 ALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVA---PGGLGGTYAGNPI 302 (425)
T ss_dssp HHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSC---TTSBCCSSSSCHH
T ss_pred HHHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecccccCCCcceEEEEEcHHHHHhhC---CCCCCCCCCcCHH
Confidence 9999999999999999998 99999999999999999999999999999999999999999887 4568899999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHH
Q 011959 353 AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (474)
Q Consensus 353 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (474)
+|+|++++|++++++++.+++++.++++++.|+++..+++.+.++++.|+|++++|..+... ..++......+.+
T Consensus 303 ~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~-----~~~~~~~~~~~~~ 377 (425)
T d1sffa_ 303 ACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDH-----NKPDAKLTAEIVA 377 (425)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCT-----TSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEccccEEEEEEeccCcc-----CCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999764322 2245667788999
Q ss_pred HHHHCCeEecccCC--cceEE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 433 GMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 433 ~l~~~Gv~v~~~~~--~~~~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
.|+++||++.+.+. +.+++ ++++|++|||+++++|+++++++
T Consensus 378 ~l~~~Gvl~~~~g~~~n~i~~~PpL~it~~eid~~l~~l~~al~ei 423 (425)
T d1sffa_ 378 RARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEA 423 (425)
T ss_dssp HHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999987653 33444 68999999999999999999863
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.5e-68 Score=527.61 Aligned_cols=387 Identities=23% Similarity=0.345 Sum_probs=334.3
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHh
Q 011959 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (474)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 130 (474)
++|++++++.+++.+...+ ++|++|++|+|+|+||.|||+||||.+++++++|||+||+|++|+++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----------p~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~ 72 (404)
T d2byla1 3 PTSDDIFEREYKYGAHNAH----------PLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDK 72 (404)
T ss_dssp CCHHHHHHHHHHHBCSCCC----------CEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHhccCCCC----------CCCceEEEeecCEEEECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhh
Confidence 4689999999999765332 248999999999999999999999999999999999999999999999998
Q ss_pred cCCC--CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhc--------CCcEEEEEeCCCCCCchhHHH
Q 011959 131 GTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCYHGHADPFLV 200 (474)
Q Consensus 131 ~~~~--~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~--------~~~~ii~~~~~yhg~~~~~~~ 200 (474)
+... .+++....++++.+.+.. +.++++|++||+||++.|+|+||.++ ++.+++.++++|||.+...+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~ 151 (404)
T d2byla1 73 LTLTSRAFYNNVLGEYEEYITKLF-NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAIS 151 (404)
T ss_dssp CCCCCTTEEESSHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHT
T ss_pred CCCcccccccchHHHHHHhhhhcc-cccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceec
Confidence 5432 234455566777776665 67899999999999999999999764 567899999999999999988
Q ss_pred hcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC
Q 011959 201 KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280 (474)
Q Consensus 201 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g 280 (474)
.++.......+ .+. ...+..+|+||++++++.+.. +++++||+||+++++|.+.|+++||++|+++|++||
T Consensus 152 ~~~~~~~~~~~--~p~-----~~~~~~~p~~d~~~l~~~l~~--~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g 222 (404)
T d2byla1 152 SSTDPTSYDGF--GPF-----MPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQ 222 (404)
T ss_dssp TCCCHHHHTTS--CSC-----CTTEEEECTTCHHHHHHHHTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHT
T ss_pred cCCCcccccCC--CCC-----CCCeeEecccCHHHHHHhcCC--CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcC
Confidence 77764332211 111 124788899999999999974 489999999999999999999999999999999999
Q ss_pred CEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHH
Q 011959 281 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 358 (474)
Q Consensus 281 ~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~ 358 (474)
++||+|||++|| |+|.+|+++++|+.|||+||||++++| +|+|++++++++++.+. +..+++||++||++|++++
T Consensus 223 ~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~---~~~~~~T~~gnpl~~aaa~ 299 (404)
T d2byla1 223 VLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIK---PGEHFSTYGGNPLGCRVAI 299 (404)
T ss_dssp CEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSC---TTSSCCSSTTCHHHHHHHH
T ss_pred eEEEeeccccccccccccchhhhcCCCCCEEEECchhhCCCccceeeeechhhhhccC---CCCCCcCCCcCHHHHHHHH
Confidence 999999999999 999999999999999999999999988 79999999999999887 4568899999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCC
Q 011959 359 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 438 (474)
Q Consensus 359 aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 438 (474)
++|++++++++.+++++++++++++|+++. .+.+.++++.|+|+++++.+.... ....+.+.|+++|
T Consensus 300 a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~--~~~i~~vRg~Gl~~~i~~~~~~~~-----------~~~~~~~~l~~~G 366 (404)
T d2byla1 300 AALEVLEEENLAENADKLGIILRNELMKLP--SDVVTAVRGKGLLNAIVIKETKDW-----------DAWKVCLRLRDNG 366 (404)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHTSC--TTTEEEEEEETTEEEEEECCCSSC-----------CHHHHHHHHHHTT
T ss_pred HHHHHHHhcCchhhhhHhhHHHHHHHHhhc--cccceeeeecccEEEEEEecCCch-----------hHHHHHHHHHhCC
Confidence 999999999999999999999999999874 357889999999999998653211 1356888999999
Q ss_pred eEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 439 VYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 439 v~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
|++.+.+.+.+++ ++++|+++||+++++|++++++
T Consensus 367 vl~~~~~~~~i~l~PpL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 367 LLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp EECEEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence 9998876666666 6899999999999999999875
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.7e-68 Score=523.86 Aligned_cols=380 Identities=29% Similarity=0.416 Sum_probs=331.0
Q ss_pred HHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC
Q 011959 54 EEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS 133 (474)
Q Consensus 54 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~ 133 (474)
+++++..+.+ +.|++. ..|++|+|++|+|+||.|||+||||.+++++++|||+||+|++|+.+|++++..
T Consensus 2 ~~~~~~~~~~-~~~~y~---------~~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~ 71 (387)
T d1vefa1 2 RALLEAEKTL-DSGVYN---------KHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA 71 (387)
T ss_dssp HHHHHHHHHH-BCSCSC---------CCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCC
T ss_pred hhHHhhhhhc-cCCCCC---------CCCceEEEeEcCEEEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcc
Confidence 4566665554 444432 249999999999999999999999999999999999999999999999998543
Q ss_pred --CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCC
Q 011959 134 --FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG 210 (474)
Q Consensus 134 --~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~ 210 (474)
...+++...++++.+.+..+ +.++++|++||+||++.|+|+||.++++.+||.++++|||++..++..++.......
T Consensus 72 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~ 151 (387)
T d1vefa1 72 MPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREP 151 (387)
T ss_dssp CCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGG
T ss_pred cccccCCchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCC
Confidence 33568889999999999887 457899999999999999999999999999999999999999999998876432211
Q ss_pred CCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc
Q 011959 211 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290 (474)
Q Consensus 211 ~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~ 290 (474)
+ .+ ...++..+||||++.|++.++ +++++||+||+++++|.+.++++||++|+++|++||++||+|||+|
T Consensus 152 ~--~p-----~~~~~~~~p~~d~~~l~~~~~---~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t 221 (387)
T d1vefa1 152 F--LP-----LVEPVEFIPYNDVEALKRAVD---EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT 221 (387)
T ss_dssp G--CS-----CSSCEEEECTTCHHHHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred C--CC-----CCCCceEeCCCCHHHHHHhcC---CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEeccccc
Confidence 1 11 122478899999999999886 4799999999999999999999999999999999999999999999
Q ss_pred Cc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCH
Q 011959 291 GF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (474)
Q Consensus 291 g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (474)
|| |+|.+++++++|+.||++|+||++++|+|++++++++++++.+. +..+++||++||++|++++++|+.++++++
T Consensus 222 GfgR~G~~~~~~~~~v~PDi~~~gK~l~gG~~~~~~~~~~~~~~~~~---~~~~g~T~~gnPla~aaa~a~L~~l~~~~~ 298 (387)
T d1vefa1 222 GMGRTGKRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMP---KGGHGTTFGGNPLAMAAGVAAIRYLERTRL 298 (387)
T ss_dssp TTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSC---TTSSCCSSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ccCccCCCcccccCCcCCceeeecccCCCCccccccccceeeeeccc---cCCccccCCCCcchhhhcccchhhcccccc
Confidence 99 99999999999999999999999999999999999999999886 566899999999999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcce
Q 011959 370 YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 449 (474)
++++++++++++++|+++. .+.+.++++.|+|+++++.++. ...+.+.++++|+++.+.+...+
T Consensus 299 ~~~v~~~g~~l~~~L~~l~--~~~v~~vrg~Gl~~~ie~~~~~--------------~~~~~~~~~~~g~l~~~~g~~~i 362 (387)
T d1vefa1 299 WERAAELGPWFMEKLRAIP--SPKIREVRGMGLMVGLELKEKA--------------APYIARLEKEHRVLALQAGPTVI 362 (387)
T ss_dssp HHHHHHHHHHHHHHHHTSC--CTTEEEEEEETTEEEEEESSCS--------------HHHHHHHHHHHCEECEESSTTEE
T ss_pred cchHhhhhHHHHHHHHhcC--CCceEEEeecceEEEEEEeCCc--------------hHHHHHHHHHCCCeEEecCCCEE
Confidence 9999999999999998763 4667899999999999996431 13566778899999887776665
Q ss_pred EE--ecCCcHHHHHHHHHHHHHHHh
Q 011959 450 FT--SLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 450 ~~--~~~~t~e~i~~~l~~l~~~~~ 472 (474)
++ ++++|++|||+++++|++++.
T Consensus 363 r~~Ppl~it~~~ld~~~~~i~~aLS 387 (387)
T d1vefa1 363 RFLPPLVIEKEDLERVVEAVRAVLA 387 (387)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred EEECCccCCHHHHHHHHHHHHHHhC
Confidence 55 689999999999999999873
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=100.00 E-value=2.6e-67 Score=529.85 Aligned_cols=405 Identities=21% Similarity=0.286 Sum_probs=331.0
Q ss_pred HHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-
Q 011959 54 EEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT- 132 (474)
Q Consensus 54 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~- 132 (474)
..+.+++++++.... .++ .|++|++|+|+|+||.|||+||||.+++|+.+|||+||+|++|+++|+++..
T Consensus 5 ~~~~~~~~~~~~~~~-------~~~--~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~ 75 (431)
T d1zoda1 5 ATFWRNARHHLVRYG-------GTF--EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH 75 (431)
T ss_dssp HHHHHHHHHHCCCCS-------SCC--CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHhhHHHhhccC-------CCC--CCCeEEEeecCEEEECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccc
Confidence 467777777664321 111 3899999999999999999999999999999999999999999999999864
Q ss_pred -CCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCC
Q 011959 133 -SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG 210 (474)
Q Consensus 133 -~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~ 210 (474)
...++++...+|+++|++..| +.++|+|++|||||++.|||+||.+++|++|+.++++|||.+.++++.++.......
T Consensus 76 ~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~ 155 (431)
T d1zoda1 76 LFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGV 155 (431)
T ss_dssp CCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSS
T ss_pred cccccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhccccccccccc
Confidence 234578889999999999987 689999999999999999999999999999999999999999999888765432221
Q ss_pred CCCCCCCCCC-----CC-CceEEccCC---CHHHHHHHHh-cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC
Q 011959 211 LPDSPGVPKG-----AT-YETLTAPFN---DVSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280 (474)
Q Consensus 211 ~~~~~g~~~~-----~~-~~~~~~~~~---d~~~le~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g 280 (474)
.+...+.... .. ........+ +++.++..+. .+++++++||+||+++++|.+.|+++|+++|+++|++||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~g 235 (431)
T d1zoda1 156 GPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARG 235 (431)
T ss_dssp CCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHT
T ss_pred CCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcC
Confidence 2222111000 00 000000011 2344443333 356789999999999999999999999999999999999
Q ss_pred CEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHH
Q 011959 281 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIH 359 (474)
Q Consensus 281 ~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~a 359 (474)
++||+|||+||| |+|.+++++++|+.||++|+||++++|+|++++++++++++.+.. ....+++||++||++|+|+.+
T Consensus 236 illI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~gK~l~gG~p~~av~~~~~~~~~~~~-~~~~~~~T~~g~pl~~aaa~a 314 (431)
T d1zoda1 236 MLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHE-LGYLFYTTHVSDPLPAAVGLR 314 (431)
T ss_dssp CEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHH-TTCCCCCTTTTCHHHHHHHHH
T ss_pred ceEEeccccccccccccccccccCCCCcchhccccccccccccceeeeeecchhhhhc-ccccccCCCCCCcchHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999887753 234577899999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCe
Q 011959 360 TLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV 439 (474)
Q Consensus 360 al~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 439 (474)
+|++++++++.+++.++++++.+.++++..+++++.++++.|+|++++|..+... ..+.......+.+.|+++|+
T Consensus 315 ~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~-----~~~~~~~~~~i~~~~~~~Gl 389 (431)
T d1zoda1 315 VLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRT-----KEPADGLGAKITRECMNLGL 389 (431)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTT-----TEECTTHHHHHHHHHHHTTE
T ss_pred HHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEecCCcc-----cCccHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999753211 12334456778899999998
Q ss_pred Ee----cccCCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 440 YF----APSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 440 ~v----~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+. .+...+.+++ ++++|++|||+++++|++++++
T Consensus 390 ~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~ 429 (431)
T d1zoda1 390 SMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429 (431)
T ss_dssp ECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 63 3333344554 6899999999999999999986
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=2.9e-64 Score=502.68 Aligned_cols=388 Identities=21% Similarity=0.309 Sum_probs=314.8
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC
Q 011959 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (474)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 132 (474)
.+++.+..+++..... . ++|++|++++|+|+||.|||+||||.+++++.+|||+||+|++|+++|+++..
T Consensus 3 ~~~~~~~~~~~~~~~y-------~---p~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~ 72 (404)
T d1z7da1 3 PEDYINNELKYGAHNY-------D---PIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLT 72 (404)
T ss_dssp HHHHHHHHHHHBCCCC-------C---CEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcCCCCC-------C---CCCceEEEeecCEEEECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCC
Confidence 3566666677765432 1 24899999999999999999999999999999999999999999999998843
Q ss_pred C-CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhc--------CCcEEEEEeCCCCCCchhHHHhcC
Q 011959 133 S-FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCYHGHADPFLVKAG 203 (474)
Q Consensus 133 ~-~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~--------~~~~ii~~~~~yhg~~~~~~~~~g 203 (474)
. .........++++++....++.+++.|++||++|++.|++++|.++ .+.+++.+.++|||.+.......+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~ 152 (404)
T d1z7da1 73 ICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISAST 152 (404)
T ss_dssp CCCTTSEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC-------------
T ss_pred CcccccchHHHHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCccccccccc
Confidence 2 2223333344555555555578999999999999999999998774 235799999999999988887766
Q ss_pred CCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEE
Q 011959 204 SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL 283 (474)
Q Consensus 204 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~ll 283 (474)
........ . .....+..+|+++.+.++..+.. +++++||+||+++++|.+.|+++||++|+++|++||++|
T Consensus 153 ~~~~~~~~--~-----~~~~~~~~~~~~~~~~l~~~~~~--~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~ll 223 (404)
T d1z7da1 153 TKKCTSNF--G-----PFAPQFSKVPYDDLEALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLF 223 (404)
T ss_dssp --------------------CEEEECTTCHHHHHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEE
T ss_pred ccccccCC--C-----CCCccccccccchHHHHHHHhcC--CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 54332111 0 11234788899999999888763 589999999999999999999999999999999999999
Q ss_pred EEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHH
Q 011959 284 IFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 361 (474)
Q Consensus 284 I~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal 361 (474)
|+|||+||| |+|.+|+++++|+.||++|+||++++| +|+|++++++++++.+. +..+++||++||++|+|++++|
T Consensus 224 I~DEV~tGfgRtG~~~~~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~---~~~~~~T~~gnpl~~aaa~a~L 300 (404)
T d1z7da1 224 VADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIK---PGEHGSTYGGNPLAASICVEAL 300 (404)
T ss_dssp EEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCC---TTCCCCTTTTCHHHHHHHHHHH
T ss_pred EEEcCccCCCcccccccccccCCCCCEEEEcccccCCCCCcccccchHHHHccCC---CCCcCcCCCCCcchhhhhhhhh
Confidence 999999999 999999999999999999999999987 79999999999999887 4568899999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEe
Q 011959 362 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 441 (474)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 441 (474)
++++++++.+++.++++++.+.|++...+++.+.++++.|+|++++|.++... ...+.+.|+++||++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~------------~~~~~~~l~~~Gl~~ 368 (404)
T d1z7da1 301 NVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVN------------VLDICLKLKENGLIT 368 (404)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTCC------------HHHHHHHHHHTTEEC
T ss_pred hhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCccc------------HHHHHHHHHhCCeEE
Confidence 99988999999999999999999999999999999999999999999764321 246788999999999
Q ss_pred cccCCcceEE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 442 APSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 442 ~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
.+.+.+.+++ ++++|+++||+++++|+++++++
T Consensus 369 ~~~~~~~ir~~Ppl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 369 RDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp CEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence 9887776665 68999999999999999999863
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-63 Score=499.36 Aligned_cols=377 Identities=25% Similarity=0.346 Sum_probs=318.3
Q ss_pred Ce-EEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCC-CCC
Q 011959 82 PI-VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIE 156 (474)
Q Consensus 82 p~-~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~~~ 156 (474)
|+ .+++|+|+|+||.|||+||||.+|+++++|||+||+|++|+++|++++.. ...+++...++++++.+..| +.+
T Consensus 25 p~~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 104 (429)
T d1s0aa_ 25 PVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLE 104 (429)
T ss_dssp CCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCC
T ss_pred CCcceEEeECCEEEECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCccchHHHHHHHHHHhhhccCcc
Confidence 55 48999999999999999999999999999999999999999999998642 23467888999999999988 678
Q ss_pred eEEEeCCHHHHHHHHHHHhHhhc-----CCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-----CCCCCCCCCCCCceE
Q 011959 157 MVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-----PDSPGVPKGATYETL 226 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~-----~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-----~~~~g~~~~~~~~~~ 226 (474)
+++|++||+||++.|+++||.++ ++.+||.++++|||.+.+++..++........ +.....+........
T Consensus 105 ~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (429)
T d1s0aa_ 105 CVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDG 184 (429)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-C
T ss_pred eeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCcccccccccccccccccc
Confidence 99999999999999999999874 35699999999999999999888753322111 000011111111122
Q ss_pred EccCCCHHHHHHHHhcCCCCeEEEEEcccc-CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccC
Q 011959 227 TAPFNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG 304 (474)
Q Consensus 227 ~~~~~d~~~le~~l~~~~~~~a~vi~ep~~-~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g 304 (474)
..++++++++++.+.++++++++||+||++ +.+|.+.|+++|+++|+++|++||++||+|||++|| |+|.+++++++|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~ 264 (429)
T d1s0aa_ 185 EWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAE 264 (429)
T ss_dssp CCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGT
T ss_pred ccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccce
Confidence 223346788888887777899999999997 667788999999999999999999999999999999 999999999999
Q ss_pred CCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC--CCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011959 305 VTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 381 (474)
Q Consensus 305 ~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~ 381 (474)
+.||++|+||++++| +|+|++++++++++.+... +.+.+++||++||++|++++++|++++++++.+++++.+++|+
T Consensus 265 v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~ 344 (429)
T d1s0aa_ 265 IAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLR 344 (429)
T ss_dssp CCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ecccccccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccccchhhHHHHHHH
Confidence 999999999999876 7999999999999988642 3466889999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHH
Q 011959 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDD 459 (474)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~ 459 (474)
++|+++ .+++.+.++++.|+|+++++..+. ....+.+.|+++|+++.+.+ +.+++ ++++|++|
T Consensus 345 ~~L~~l-~~~~~v~~vrg~Gl~~~~e~~~~~-------------~~~~~~~~~~~~Gl~~~~~g-~~i~~~Ppl~it~~e 409 (429)
T d1s0aa_ 345 EQLAPA-RDAEMVADVRVLGAIGVVETTHPV-------------NMAALQKFFVEQGVWIRPFG-KLIYLMPPYIILPQQ 409 (429)
T ss_dssp HHHGGG-GGCTTEEEEEEETTEEEEEESSCB-------------CHHHHHHHHHHTTEECCCBT-TEEEECCCTTCCHHH
T ss_pred HHHHHh-ccCCceEEEeecccEEEEEecCcc-------------cHHHHHHHHHHCCcEEEecC-CEEEEeCCcCCCHHH
Confidence 999886 457788899999999999986431 12568899999999998876 45555 58999999
Q ss_pred HHHHHHHHHHHHhh
Q 011959 460 IQHTITAAEKVLRQ 473 (474)
Q Consensus 460 i~~~l~~l~~~~~~ 473 (474)
||+++++|++++++
T Consensus 410 id~~~~~l~~al~e 423 (429)
T d1s0aa_ 410 LQRLTAAVNRAVQD 423 (429)
T ss_dssp HHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999876
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=1.4e-63 Score=505.13 Aligned_cols=394 Identities=17% Similarity=0.210 Sum_probs=321.7
Q ss_pred CCCchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHH
Q 011959 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (474)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (474)
..+.+++++++++.+++.+.+... +|+++++|+|+|+||.|||+||||.+|+++++|||+||+|++|+.+
T Consensus 11 ~~pgp~s~~l~~~~~~~~~~~~~~----------~p~~~~~g~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ 80 (461)
T d1ohwa_ 11 EVPGPRSRELMKQLNIIQNAEAVH----------FFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQ 80 (461)
T ss_dssp CSSCHHHHHHHHHHHHHSCCTTCC----------CCBCTTTCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHC
T ss_pred CCCChHHHHHHHHHHHhcCCCCCC----------CCeEEEEeecCEEEECCCCEEEEcccCHHHHhhcCCcHHHHHHHHH
Confidence 466788999999999988765432 3889999999999999999999999999999999999999999999
Q ss_pred HHHhcC-----CC--CCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh--------------------
Q 011959 127 TMKKGT-----SF--GAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-------------------- 178 (474)
Q Consensus 127 ~~~~~~-----~~--~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~-------------------- 178 (474)
|+++.. .+ ..+..+.++|+++|.+..+ +.++++|++||+||++.|||+||.+
T Consensus 81 q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~ 160 (461)
T d1ohwa_ 81 PQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCM 160 (461)
T ss_dssp GGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHhhhhhcccccccccchHHHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhh
Confidence 887631 11 1234566788888888776 6889999999999999999999875
Q ss_pred ------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCC-CCCCCCCCCCCCCceEEccC------------CCHHHHHHH
Q 011959 179 ------TGRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDSPGVPKGATYETLTAPF------------NDVSALENL 239 (474)
Q Consensus 179 ------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~-~~~~~g~~~~~~~~~~~~~~------------~d~~~le~~ 239 (474)
+++.+||.+.++|||.+.++++.++....... .+...+... .......+. +++++++++
T Consensus 161 ~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (461)
T d1ohwa_ 161 INQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIA--PFPRLKYPLEEFVKENQQEEARCLEEVEDL 238 (461)
T ss_dssp TTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEE--CCCCCCSSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred hccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCccc--ccccccccccccccccchhhhhhHHHHHHH
Confidence 44668999999999999999999887533211 111111000 000011111 124555555
Q ss_pred Hh---cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCC--Cceeehh
Q 011959 240 FE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT--PDLTTLG 313 (474)
Q Consensus 240 l~---~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~--pdi~t~s 313 (474)
+. .+++++++||+||+++++|.+.++++||++|+++|++||++||+|||++|| |+|.+|+++++|+. ||++|+|
T Consensus 239 ~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~g 318 (461)
T d1ohwa_ 239 IVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS 318 (461)
T ss_dssp HHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEEC
T ss_pred HHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhhhh
Confidence 53 466799999999999999999999999999999999999999999999999 99999999999984 9999999
Q ss_pred hhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-
Q 011959 314 KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG- 392 (474)
Q Consensus 314 K~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~- 392 (474)
|++++|.++. ... +.......+.+||++||++|++++++|+.++++++++++++++++|+++|+++..+++
T Consensus 319 K~l~~g~~~~----~~~----~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~ 390 (461)
T d1ohwa_ 319 KKMMTGGFFH----KEE----FRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQ 390 (461)
T ss_dssp GGGSSEEEEE----CGG----GSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hccccccccc----ccc----cccccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999764332 222 2223356788999999999999999999999999999999999999999999988885
Q ss_pred CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHH
Q 011959 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~ 470 (474)
++.+++|.|+|+++++.+ .....++.+.|+++|+++.+.+.+.+++ ++++|++|+|+++++|+++
T Consensus 391 ~i~~vrG~Gl~~~ie~~~-------------~~~~~~i~~~~~~~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~ 457 (461)
T d1ohwa_ 391 FISRVRGRGTFCSFDTPD-------------ESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDI 457 (461)
T ss_dssp TCEEEEEETTEEEEECSS-------------HHHHHHHHHHHHHTTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred ceEEeeeeeEEEEEEcCC-------------HHHHHHHHHHHHHCCeEEeeCCCCEEEEeCCcCCCHHHHHHHHHHHHHH
Confidence 788999999999999843 3455688999999999999877666655 6999999999999999999
Q ss_pred Hhh
Q 011959 471 LRQ 473 (474)
Q Consensus 471 ~~~ 473 (474)
+++
T Consensus 458 l~e 460 (461)
T d1ohwa_ 458 LAD 460 (461)
T ss_dssp HHT
T ss_pred Hhc
Confidence 986
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.2e-41 Score=332.20 Aligned_cols=343 Identities=20% Similarity=0.262 Sum_probs=269.6
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCC-CHHHHHHHHHHHHh-cCCCCC------CCHHHHHHHHHHHhhCC
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA-DDQVLAALGETMKK-GTSFGA------PCLLENVLAEMVISAVP 153 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~-~~~~~~------~~~~~~~la~~l~~~~~ 153 (474)
..++++++|+++||.||++||||+++ +|||+. ||+|++++++++++ +++++. ..+...+|.+.+++++
T Consensus 28 ~~~i~~~~g~~v~~~dG~~~l~f~s~---dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~- 103 (401)
T d1fc4a_ 28 ERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL- 103 (401)
T ss_dssp CCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH-
T ss_pred ceeccCCCCCeEEecCCCEEEEEEcc---ccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhh-
Confidence 34689999999999999999999999 999995 99999999999987 444332 4677778888888887
Q ss_pred CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCH
Q 011959 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (474)
Q Consensus 154 ~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~ 233 (474)
+.+.++++|||++|+..+++ ++.+++++|+.+...|......+... ..++..++++|.
T Consensus 104 g~e~al~~~SG~~An~~~i~---~l~~~~d~i~~d~~~h~s~~~G~~~~-------------------~a~~~~~~~~d~ 161 (401)
T d1fc4a_ 104 GMEDAILYSSCFDANGGLFE---TLLGAEDAIISDALNHASIIDGVRLC-------------------KAKRYRYANNDM 161 (401)
T ss_dssp TCSEEEEESCHHHHHHTTHH---HHCCTTCEEEEETTCCHHHHHHHHTS-------------------CSEEEEECTTCH
T ss_pred cCCceEEecchhhhhHHHHH---HhcCCCcEEEeCCcchHHHHcccccc-------------------CceEEEEcCCCh
Confidence 78999999999999999998 67788888888888887654443322 224678899999
Q ss_pred HHHHHHHhc---CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC--CCccccccCCC--
Q 011959 234 SALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA--YGGAQEYFGVT-- 306 (474)
Q Consensus 234 ~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g--~~~~~~~~g~~-- 306 (474)
++++++++. ++...++|++|+++++.|.+.| |++|++||++||++||+||+|+++..| ..+..+++++.
T Consensus 162 ~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~ 237 (401)
T d1fc4a_ 162 QELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGR 237 (401)
T ss_dssp HHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTC
T ss_pred HHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh----hhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCC
Confidence 888887753 3456789999999999999999 999999999999999999999765222 34566777774
Q ss_pred Ccee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 011959 307 PDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQG 383 (474)
Q Consensus 307 pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~ 383 (474)
+|++ ||||+++ |.+.|++.+++++++.+....+.+.+ +.+.+|..++++.++++.+.+ ++++++++++.+++++.
T Consensus 238 ~dii~~tl~Ka~g-g~~Gg~v~g~~~~~~~l~~~~~~~~~-s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~ 315 (401)
T d1fc4a_ 238 VDIITGTLGKALG-GASGGYTAARKEVVEWLRQRSRPYLF-SNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQ 315 (401)
T ss_dssp CSEEEEESSSTTC-SSSCEEEEECHHHHHHHHHHCHHHHH-SCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEeecccccc-cCCcccccCCHHHHHHHHcCChhhhh-cCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhh
Confidence 4554 8999996 56688999999999988743344444 346788888888999988776 67889999999999999
Q ss_pred HHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcc-------eEE--ecC
Q 011959 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------GFT--SLA 454 (474)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-------~~~--~~~ 454 (474)
+.+...... ...+.++.+.+. +......+.+.|+++||++.+..++. +|+ +..
T Consensus 316 l~~~g~~~~-----~~~~pIv~v~~~-------------~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~ 377 (401)
T d1fc4a_ 316 MSAAGFTLA-----GADHAIIPVMLG-------------DAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAA 377 (401)
T ss_dssp HHHTTCCBC-----CSSSSEEEEEEE-------------CHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTT
T ss_pred hcccCCccC-----CCCCCEEEEEEC-------------CHHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCC
Confidence 887632211 122334444442 34456789999999999998765543 454 688
Q ss_pred CcHHHHHHHHHHHHHHHhhC
Q 011959 455 HSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 455 ~t~e~i~~~l~~l~~~~~~~ 474 (474)
||+||||+++++|+++.+++
T Consensus 378 hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 378 HTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp CCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998874
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-37 Score=305.69 Aligned_cols=337 Identities=17% Similarity=0.184 Sum_probs=264.9
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHh-cCCC------CCCCHHHHHHHHHHHhhCC
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMVISAVP 153 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~~------~~~~~~~~~la~~l~~~~~ 153 (474)
++++.+++|.++. .||++||||+++ +|||+ .||+|++++.+++++ +++. .+..+...+|.++|++++
T Consensus 22 ~~~~~~~~g~~i~-~~g~~~l~f~s~---dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~- 96 (383)
T d1bs0a_ 22 RYPVAQGAGRWLV-ADDRQYLNFSSN---DYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL- 96 (383)
T ss_dssp CCCCSBCSSSEEE-ETTEEEEECSCC---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH-
T ss_pred ccccCCCCCCeEE-ECCeEEEEEEcc---cccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc-
Confidence 4567899999997 999999999999 99999 499999999999988 4322 245788888989998888
Q ss_pred CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCH
Q 011959 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (474)
Q Consensus 154 ~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~ 233 (474)
+.|.+++++||+.|+..++. ++.+++++|+.+...|.......... ...+..++|||+
T Consensus 97 g~e~al~~~SG~~an~~~i~---al~~~~d~v~~d~~~h~si~~g~~~~-------------------~~~~~~~~hnd~ 154 (383)
T d1bs0a_ 97 GYSRALLFISGFAANQAVIA---AMMAKEDRIAADRLSHASLLEAASLS-------------------PSQLRRFAHNDV 154 (383)
T ss_dssp TCSEEEEESCHHHHHHHHHH---HHCCTTCEEEEETTCCHHHHHHHHTS-------------------SSEEEEECTTCH
T ss_pred CCCceEEecccchhhHHHHH---hhcCCCceEEeeccccHHHhhccccC-------------------CCcceEecchHH
Confidence 78899999999999999998 78899999999999988665544322 235789999999
Q ss_pred HHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc-ccCCCccccccCCCCcee-
Q 011959 234 SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT- 310 (474)
Q Consensus 234 ~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~- 310 (474)
+++++.+.+.+++...|++|++++++|.+.| +++|.++|++||++||+||+|+ |. .....+..+++++.+|++
T Consensus 155 ~~le~~l~~~~~~~~~vv~e~v~s~~G~i~p----l~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~ 230 (383)
T d1bs0a_ 155 THLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLV 230 (383)
T ss_dssp HHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEE
T ss_pred HHHHHHhcccCCCceEEEecCCCCCCCcccc----hhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCcccccc
Confidence 9999999987777889999999999999999 9999999999999999999995 33 333455678899988876
Q ss_pred -ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHH
Q 011959 311 -TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID 386 (474)
Q Consensus 311 -t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~ 386 (474)
++||++++ ..|++.++.++++.++...+.+.+ +...+|..++++.++++.++. +...+++.++..++++.|.+
T Consensus 231 ~t~~ka~g~--~Gg~v~~~~~~~~~l~~~~~~~~~-s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 307 (383)
T d1bs0a_ 231 VTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIY-STSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD 307 (383)
T ss_dssp EESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHS-SBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccc--cccccccchhHHHHHHhhchhhhh-cccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 68888874 578889999999988754444444 446778888888899888765 34556667777777777755
Q ss_pred HhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcc-------eEE--ecCCcH
Q 011959 387 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA-------GFT--SLAHSS 457 (474)
Q Consensus 387 ~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-------~~~--~~~~t~ 457 (474)
+ ++. ...+...++.+.+ ++......+.+.|+++||++.+..++. +|+ +..||+
T Consensus 308 ~----g~~-~~~~~s~Ii~v~~-------------g~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~ 369 (383)
T d1bs0a_ 308 L----PFT-LADSCSAIQPLIV-------------GDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEM 369 (383)
T ss_dssp S----SCE-ECSCCSSBCCEEE-------------ESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCH
T ss_pred c----CCc-cCCCCCCEEEEEE-------------CCHHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCH
Confidence 4 221 1122233333333 344566789999999999998765543 444 688999
Q ss_pred HHHHHHHHHHHHH
Q 011959 458 DDIQHTITAAEKV 470 (474)
Q Consensus 458 e~i~~~l~~l~~~ 470 (474)
||||+++++|+.+
T Consensus 370 edid~l~~~L~~~ 382 (383)
T d1bs0a_ 370 QDIDRLLEVLHGN 382 (383)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999864
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=100.00 E-value=3.1e-33 Score=274.20 Aligned_cols=340 Identities=21% Similarity=0.200 Sum_probs=255.5
Q ss_pred eEEEeeccCEE---E---EcCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHh-cCCC------CCCCHHHHHHHHHH
Q 011959 83 IVFDSVKGSHM---W---DIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSF------GAPCLLENVLAEMV 148 (474)
Q Consensus 83 ~~~~~~~G~~~---~---d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~~------~~~~~~~~~la~~l 148 (474)
..+++..|.+. | +.++++++||+++ +|||. .||+++++..+.+++ +++. .+..+...+|.++|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~FsSn---dYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~l 99 (396)
T d2bwna1 23 IDIEREKGAFPKAQWNRPDGGKQDITVWCGN---DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEI 99 (396)
T ss_dssp CEEEECTTSTTEEEEECTTSCEEEEEECSCS---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHH
T ss_pred cccccccCCCCcceEeecCCCCeEEEEEEcc---cccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHH
Confidence 34677777531 2 2346899999999 99999 599999999999987 4322 24578888999999
Q ss_pred HhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEc
Q 011959 149 ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 228 (474)
Q Consensus 149 ~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 228 (474)
++++ +.|.+++++||+.||..++... ...+++++|+.|...|.+....+.+++. ++..+
T Consensus 100 A~~~-g~e~all~~sG~~An~~~i~~l-~~~~~~d~i~~D~~~Hasi~~g~~ls~a-------------------~~~~f 158 (396)
T d2bwna1 100 AGLH-QKEAALVFSSAYNANDATLSTL-RVLFPGLIIYSDSLNHASMIEGIKRNAG-------------------PKRIF 158 (396)
T ss_dssp HHHT-TCSEEEEESCHHHHHHHHHHHH-HHHSTTCEEEEETTCCHHHHHHHHHSCC-------------------CEEEE
T ss_pred HHHh-CCCceeeeecchHHHHHHHHHH-hcccCCCceeehhhhhhccchhhhcccc-------------------CceEe
Confidence 9998 7889999999999999999832 1246778999999999876655554432 47788
Q ss_pred cCCCHHHHHHHHhcC-CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCC
Q 011959 229 PFNDVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGV 305 (474)
Q Consensus 229 ~~~d~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~ 305 (474)
+|||+++++++++.. +.+...|++|.++++.|.+.| |++|.+||++||++|++||+| .|. .....+..+++++
T Consensus 159 ~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~ap----l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~ 234 (396)
T d2bwna1 159 RHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGL 234 (396)
T ss_dssp CTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTC
T ss_pred ecchHHHhhhHHhhhcccCceeEEEEeeccCcccccc----cHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCC
Confidence 999999999888753 345678999999999999999 999999999999999999999 566 4444455677776
Q ss_pred CC--cee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHH
Q 011959 306 TP--DLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITG 378 (474)
Q Consensus 306 ~p--di~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~ 378 (474)
.+ |++ ||||++|+ -.|++++++++++.++...+.+.++| +.+|..++++.++++.+.. +..+.+++.+.+
T Consensus 235 ~~~~di~~gTlsKa~g~--~Gg~v~~~~~~i~~l~~~~~~~ifSt-alpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~ 311 (396)
T d2bwna1 235 MHRIDIFNGTLAKAYGV--FGGYIAASARMVDAVRSYAPGFIFST-SLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAK 311 (396)
T ss_dssp GGGCSEEEEESSSTTCS--CCEEEEECHHHHHHHHHHCHHHHTSB-CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred ceeeeeeeecccccccc--cccccchhHHHHHHHHhhcchhhhcc-cCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 43 554 89999985 25677899999999975444455543 6678888888899998765 334667778888
Q ss_pred HHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccCCcc-------eE
Q 011959 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEA-------GF 450 (474)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~-------~~ 450 (474)
++++.|.++..... .....++.+.+ .+......+++.|+ ++||++.+..+|. +|
T Consensus 312 ~~~~~l~~~g~~~~-----~~~spIvpv~i-------------g~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlR 373 (396)
T d2bwna1 312 VLKMRLKALGMPII-----DHGSHIVPVVI-------------GDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLR 373 (396)
T ss_dssp HHHHHHHHHTCCBC-----CCSSSCEEEEC-------------CCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEE
T ss_pred HHHHHHHhcCCCcC-----CCCCCEEEEEe-------------CCHHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEE
Confidence 88888877632211 11223333333 34455677888766 6899998776543 45
Q ss_pred E--ecCCcHHHHHHHHHHHHHHH
Q 011959 451 T--SLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 451 ~--~~~~t~e~i~~~l~~l~~~~ 471 (474)
+ +..||++|||+++++|++++
T Consensus 374 i~lsa~ht~edId~l~~~L~~iw 396 (396)
T d2bwna1 374 FTPSPVHDLKQIDGLVHAMDLLW 396 (396)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHC
T ss_pred EEeCccCCHHHHHHHHHHHHHhC
Confidence 5 57899999999999999863
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=9.2e-31 Score=258.70 Aligned_cols=333 Identities=17% Similarity=0.175 Sum_probs=223.0
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~ 168 (474)
.+|+++|||..| ++--..+|+|++++.+.++++. .|+ +..++++++++++.+.++ .+++|++|+|+++|+
T Consensus 28 ~~G~~vi~l~~g---~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al 104 (382)
T d1b5pa_ 28 RQGVDLVALTAG---EPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQAL 104 (382)
T ss_dssp HTTCCCEECCCS---SCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHH
T ss_pred hCCCCeEECCCC---CCCCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHH
Confidence 345677888887 5433368999999999998753 333 235778888888887765 468999999999999
Q ss_pred HHHHHHhHhhc-CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 169 MGVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 169 ~~al~~ar~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
..+++ ++. .++.|++.+|+|+++. ..+...|..+..++.....+. ..|++++++.++ +++
T Consensus 105 ~~~~~---~l~~~gd~vl~~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~~~---~~~ 165 (382)
T d1b5pa_ 105 FNLFQ---AILDPGDEVIVLSPYWVSYP-EMVRFAGGVVVEVETLPEEGF------------VPDPERVRRAIT---PRT 165 (382)
T ss_dssp HHHHH---HHCCTTCEEEEEESCCTHHH-HHHHHTTCEEEEEECCGGGTT------------CCCHHHHHTTCC---TTE
T ss_pred HHHHH---HhCCCCCEEEECCCCcHHHH-HHHHHhcCeEEEEeccccccc------------CCCHHHHHHhCC---CCC
Confidence 99998 444 4578889999998854 344444543322111111111 017888887765 356
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCce---eehhhhcC-CCcce
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL---TTLGKIIG-GGLPV 322 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi---~t~sK~l~-~G~~i 322 (474)
+++++..++|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+........ ...++ .++||.++ +|+|+
T Consensus 166 ~~i~~~~P~NPTG~~~s~~~-~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~-~~~~~i~~~s~SK~~~~~GlR~ 243 (382)
T d1b5pa_ 166 KALVVNSPNNPTGAVYPKEV-LEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV-APEHTLTVNGAAKAFAMTGWRI 243 (382)
T ss_dssp EEEEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT-CTTTEEEEEESTTTTTCGGGCC
T ss_pred eEEEECCCCCCcchhCCHHH-HHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHc-CCCCEEEEecchhhccCcHhhe
Confidence 66666656788998887666 999999999999999999999988 55543322111 11222 37999999 89999
Q ss_pred EEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCH----HHHHHHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGT----YEYLNKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 323 G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~----~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
||+++++++++.+.. .....+.+.+.+.+.++.+++..... ..+ ++.++++.+.+.+.+. ..++....
T Consensus 244 G~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~g~~~~~ 316 (382)
T d1b5pa_ 244 GYACGPKEVIKAMAS---VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLT----ALGLKAVR 316 (382)
T ss_dssp EEEECCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTCCBCC
T ss_pred EEEEECHHHHHHHHH---HHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHh----hcCCeEec
Confidence 999999999887752 22333455566666665555532111 222 2333333444444443 33444333
Q ss_pred eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
+..|.++|+.+.... .....+.+.|+++||.+.|+. .+++|+++..++|+|++++++|++++
T Consensus 317 p~gg~~~~~~~~~~~------------~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 317 PSGAFYVLMDTSPIA------------PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVL 382 (382)
T ss_dssp CSBTTEEEEECTTTC------------SSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred CCceEEEeEeCCCCC------------CCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEEcCCHHHHHHHHHHHHHhC
Confidence 455677777764321 012467788899999999873 34689999899999999999998763
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.97 E-value=5.3e-30 Score=253.57 Aligned_cols=336 Identities=12% Similarity=0.117 Sum_probs=223.9
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~ 169 (474)
+|+++|||..| ++-...++.|++|+++.++++. .|+. ..++++++++++.+.++ ..++|++|+|+++|+.
T Consensus 28 ~g~~vi~l~~G---~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~ 104 (388)
T d1j32a_ 28 EGIDVCSFSAG---EPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCS---SCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred CCCCeEECCCC---CCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHH
Confidence 45677999887 5433368999999999998753 3432 34678888888877654 4689999999999999
Q ss_pred HHHHHhHhhc-CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 170 GVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 170 ~al~~ar~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
.+++ .+. .++.|++.+|+|.++.... ...+............+. .-|+++|++.++. +++
T Consensus 105 ~~~~---~~~~~gd~Vlv~~P~y~~~~~~~-~~~~~~~v~~~~~~~~~~------------~~d~~~l~~~~~~---~~~ 165 (388)
T d1j32a_ 105 NLML---AMIEPGDEVIIPAPFWVSYPEMV-KLAEGTPVILPTTVETQF------------KVSPEQIRQAITP---KTK 165 (388)
T ss_dssp HHHH---HHCCTTCEEEEESSCCTHHHHHH-HHTTCEEEEECCCGGGTT------------CCCHHHHHHHCCT---TEE
T ss_pred HHHH---HHhCCCCEEEEcCCCcHHHHHHH-HHhcCeEEEEeccccccc------------CCCHHHHHHhCCC---CCe
Confidence 9998 444 4678888899997754333 333332222111111111 0179999988763 566
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCC-------ceeehhhhcC-CC
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP-------DLTTLGKIIG-GG 319 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~p-------di~t~sK~l~-~G 319 (474)
++++..++|++|.+.+.++ +++|.++|++||++||+||+|..+ ..+..... .....+ -+.+|||.++ +|
T Consensus 166 ~~~~~~P~NPTG~~~~~~~-~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s-~~~~~~~~~~~~i~~~S~SK~~~~~G 243 (388)
T d1j32a_ 166 LLVFNTPSNPTGMVYTPDE-VRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLS-IGAASPEAYERSVVCSGFAKTYAMTG 243 (388)
T ss_dssp EEEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCC-GGGSCHHHHHTEEEEEESTTTTTCTT
T ss_pred EEEECCCCCCCCcccchhh-hhhhhcccccCCeEEEchhhhhcccccCCCCCC-HHHhCcccccceeEecCChhhhhcch
Confidence 6666555788998887666 999999999999999999999777 44322111 111111 1337999999 89
Q ss_pred cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
+|+||+++++++++.+. ........+.+..++.++...++..++ .+.++.++++.+.+.+.|++. .++....
T Consensus 244 lRvG~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~g~~~~~ 317 (388)
T d1j32a_ 244 WRVGFLAGPVPLVKAAT---KIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM---PGLECPK 317 (388)
T ss_dssp TCCEEEECCHHHHHHHH---HHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC---TTCBCCC
T ss_pred hHeEEEEECHHHHHHHH---HhhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhC---CCCEecC
Confidence 99999999999988776 233334556677888877777653321 233344444444555544432 1233333
Q ss_pred eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
+..|.++|+.+.... ....++++.|+ ++||.+.|+. .+++|+++..+++++++++++|+++++
T Consensus 318 p~gg~~l~~~l~~~~------------~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~~~e~l~~al~rl~~~l~ 385 (388)
T d1j32a_ 318 PDGAFYMFPSIAKTG------------RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLH 385 (388)
T ss_dssp CCBTTEECCBCGGGT------------CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCC------------CCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 445666666653211 01145666665 6699998863 456899998999999999999999987
Q ss_pred hC
Q 011959 473 QI 474 (474)
Q Consensus 473 ~~ 474 (474)
.+
T Consensus 386 ~l 387 (388)
T d1j32a_ 386 GI 387 (388)
T ss_dssp HH
T ss_pred Hh
Confidence 63
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.97 E-value=5.3e-29 Score=246.48 Aligned_cols=337 Identities=16% Similarity=0.132 Sum_probs=220.6
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC----CCCeEEEeCCHHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMG 170 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~---~~~~~~~~la~~l~~~~~----~~~~v~~~~sGseA~~~ 170 (474)
+.+|||..| ++-.-.++.|++++.+.++++ ..|+ +..++++++++++.+... ..++|++++|+++++..
T Consensus 25 ~dvi~l~~g---~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~ 101 (388)
T d1gdea_ 25 KDVISLGIG---EPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 101 (388)
T ss_dssp TTCEECCCC---SCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred CCeEECCCC---CCCCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHH
Confidence 447888877 332225899999999999874 3343 234677888888776432 35689999999999999
Q ss_pred HHHHhHhh-cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE
Q 011959 171 VLRLARAF-TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (474)
Q Consensus 171 al~~ar~~-~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (474)
+++ ++ ..++.|++.+++|.++... +...|..+...+.....++ .-|+++|++.+++ ++++
T Consensus 102 ~~~---~l~~~gd~vlv~~P~y~~~~~~-~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~~~~---~~~~ 162 (388)
T d1gdea_ 102 GLS---AFLKDGEEVLIPTPAFVSYAPA-VILAGGKPVEVPTYEEDEF------------RLNVDELKKYVTD---KTRA 162 (388)
T ss_dssp HHT---TTCCTTCEEEEEESCCTTHHHH-HHHHTCEEEEEECCGGGTT------------CCCHHHHHHHCCT---TEEE
T ss_pred HHH---HhcCCCCEEEECCCCcHHHHHH-HHHcCCEEEEeecccccCC------------CCCHHHHHHhCcc---CCeE
Confidence 988 44 4567888889999876444 4444543322211101110 0179999988863 5667
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-ccccc-CCCCce---eehhhhcC-CCcce
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF-GVTPDL---TTLGKIIG-GGLPV 322 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~-g~~pdi---~t~sK~l~-~G~~i 322 (474)
+++..++|++|.+.+.++ +++|.++|++||++||+||+|..| ..+... ....+ +..+.+ .+|||.++ +|+|+
T Consensus 163 i~~~~P~NPtG~~~s~~~-~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~ 241 (388)
T d1gdea_ 163 LIINSPCNPTGAVLTKKD-LEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRL 241 (388)
T ss_dssp EEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCC
T ss_pred EEECCCcCCCCCcCCHHH-HHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccE
Confidence 777666788998887666 999999999999999999999888 443221 22222 222223 37999999 89999
Q ss_pred EEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeece
Q 011959 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 402 (474)
Q Consensus 323 G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~ 402 (474)
||+++++++++.+.. .....+.+.+.+.+.++.++++........++.++..+..+..+.+.+...++....+..|.
T Consensus 242 G~ii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~ 318 (388)
T d1gdea_ 242 GFVAAPSWIIERMVK---FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAF 318 (388)
T ss_dssp EEEECCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTT
T ss_pred EEEEeeccchhhhhh---ccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhccccccCCCceE
Confidence 999999998887762 33344556677777777666642111112222222222233333333333444433445566
Q ss_pred eEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++|+.+.+.. ....++++.|+ ++||.+.|+. .+++|+++..++|++++++++|++++++
T Consensus 319 fl~~~l~~~~------------~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~l~e 384 (388)
T d1gdea_ 319 YIFPRIRDTG------------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKE 384 (388)
T ss_dssp EECCBCGGGT------------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCC------------CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 7776664211 11246676665 6699998762 3468999989999999999999999986
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.96 E-value=1.2e-26 Score=231.68 Aligned_cols=353 Identities=14% Similarity=0.089 Sum_probs=233.1
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcC----CCC---CCCHHHHHHHHHHHhhCC---C-CCeEEEeCCHHHHHH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFG---APCLLENVLAEMVISAVP---S-IEMVRFVNSGTEACM 169 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~---~~~~~~~~la~~l~~~~~---~-~~~v~~~~sGseA~~ 169 (474)
.||+..| ++....++.+++++++++.... .|+ +..++++.+|+++.++++ . .++|++|+|+++|+.
T Consensus 28 ~I~L~~G---~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~ 104 (418)
T d2r5ea1 28 PLNLGQG---FPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 104 (418)
T ss_dssp CEECSSS---CCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CEEccCC---CCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhh
Confidence 4788777 4544467889999999986531 232 235788899999988764 3 478999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEcc-CCCHHHHHHHHhcCCCCe
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP-FNDVSALENLFENNKGEI 247 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~d~~~le~~l~~~~~~~ 247 (474)
.+++. ....++.|++.+++|..+...... .|..+..++. +..... ...... ..+.+.+++... ..+
T Consensus 105 ~~~~~--l~~~gd~vlv~~P~y~~~~~~~~~-~g~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~~ 172 (418)
T d2r5ea1 105 ATIQG--HVDEGDEVIIIEPFFDCYEPMVKA-AGGIPRFIPLKPNKTGG------TISSADWVLDNNELEALFN---EKT 172 (418)
T ss_dssp HHHHH--HCCTTCEEEEEESCCTTHHHHHHH-TTCEEEEEECEESCCSS------CEEGGGEECCHHHHHHHCC---TTE
T ss_pred hhhhh--ccccccceeccccccchhhHHHHH-cCCeEEEEEeccccccc------chhhhhhhhhHHHHhhhhh---ccc
Confidence 99984 334568888889999885444433 3332222111 111110 000001 125677766554 367
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC--ccccccCCCCce---eehhhhcC-CCc
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDL---TTLGKIIG-GGL 320 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~--~~~~~~g~~pdi---~t~sK~l~-~G~ 320 (474)
+++++.+.+|++|.+.+.++ +++|.++|++||++||.||+|..+ ..+.. ......+..+.+ .++||.++ +|+
T Consensus 173 ~~~~i~~p~NPtG~~~s~e~-~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGl 251 (418)
T d2r5ea1 173 KMIIINTPHNPLGKVMDRAE-LEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGW 251 (418)
T ss_dssp EEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGG
T ss_pred cceecCCcCccccccccHHH-HHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCc
Confidence 88888888888998887666 999999999999999999999877 43321 112222322333 37999998 899
Q ss_pred ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHh----cC-CCHHHHHHHHHHHHHHHHHHHhhhcCCee
Q 011959 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL----KE-PGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~----~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (474)
|+||+++++++++.+.. .....+++.+.+.+.++.+.+... +. +++++++++..+..++.|.+.+.+.++..
T Consensus 252 RiG~~~~~~~~i~~~~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~ 328 (418)
T d2r5ea1 252 KIGWAYGPEALLKNLQM---VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNP 328 (418)
T ss_dssp CCEEEESCHHHHHHHHH---HHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ccccccccchhhhhhhh---cccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcCCcc
Confidence 99999999999888762 223345667777777776665432 11 45555555555555555555555567666
Q ss_pred EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC-----------CcceEEecCCcHHHHHHH
Q 011959 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ-----------FEAGFTSLAHSSDDIQHT 463 (474)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~-----------~~~~~~~~~~t~e~i~~~ 463 (474)
..+..|.++|+.+.... .........+.....+|++.|++ +||.+.|+. .+++|++++.++|+|+++
T Consensus 329 ~~P~gg~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~~e~l~~a 407 (418)
T d2r5ea1 329 TVPQGGYFMVADWSSLD-SKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKA 407 (418)
T ss_dssp EECSBSSEEEEECGGGS-TTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCSCHHHHHHH
T ss_pred cCCCceeEEEEEccccc-ccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEecCCHHHHHHH
Confidence 66677788888875321 11111111222334577887775 599998862 134799998899999999
Q ss_pred HHHHHHHHhh
Q 011959 464 ITAAEKVLRQ 473 (474)
Q Consensus 464 l~~l~~~~~~ 473 (474)
+++|++++..
T Consensus 408 ~~rl~~~lg~ 417 (418)
T d2r5ea1 408 AEILRKWKGS 417 (418)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHcc
Confidence 9999998753
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.96 E-value=9.3e-28 Score=237.90 Aligned_cols=341 Identities=14% Similarity=0.072 Sum_probs=215.0
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC-CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGV 171 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~-~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~a 171 (474)
.|+++|||..| ++.--.+|.|++|+.+.++++. .|. +..++++++++++.++++ ..++|++|+|+++|+..+
T Consensus 29 ~g~~vi~l~~g---~pdf~~p~~v~~al~~~~~~~~~~Y~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~ 105 (394)
T d1c7na_ 29 VGNEVVPLSVA---DMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNA 105 (394)
T ss_dssp CCTTCCCCCSS---SCSSCCCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHH
T ss_pred cCCCeEEccCC---CCCCCCCHHHHHHHHHHHhCCCcCCCCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhh
Confidence 47788998877 4433368999999999998753 232 245678888888887754 468999999999999999
Q ss_pred HHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEE
Q 011959 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (474)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (474)
++. ...+++.|++.+++|.+.........+..+.. ...... .... .|.+.++..+.. +++++++
T Consensus 106 ~~~--~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~-~~~~~~--------~~~~---~d~~~~~~~~~~--~~~~~i~ 169 (394)
T d1c7na_ 106 VRE--FTKPGDGVIIITPVYYPFFMAIKNQERKIIEC-ELLEKD--------GYYT---IDFQKLEKLSKD--KNNKALL 169 (394)
T ss_dssp HHH--HCCTTCEEEECSSCCTHHHHHHHTTTCEEEEC-CCEEET--------TEEE---CCHHHHHHHHTC--TTEEEEE
T ss_pred hcc--ccccccccccccCcccchhhHHhhhhhccccc-cccccc--------cccc---chhhhhhhhhcc--ccceEEE
Confidence 984 33456788888888877544333222221111 000000 0111 167777777653 3678888
Q ss_pred EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccc-cc--cC---CCCceeehhhhcC-CCcceE
Q 011959 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-EY--FG---VTPDLTTLGKIIG-GGLPVG 323 (474)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~-~~--~g---~~pdi~t~sK~l~-~G~~iG 323 (474)
+.+++|++|.+.+.++ +++|.++|++|+++||+||+|.+| ..+..... .. .+ ...-+.++||.++ +|+|+|
T Consensus 170 l~~P~NPTG~v~s~~~-l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g 248 (394)
T d1c7na_ 170 FCSPHNPVGRVWKKDE-LQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMS 248 (394)
T ss_dssp EESSBTTTTBCCCHHH-HHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCE
T ss_pred ecccccccceeccHHH-hhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccc
Confidence 8888889999888776 999999999999999999999988 54432211 11 11 1111337999999 799999
Q ss_pred EEEec-HHHHHhhcCCCCcccccCCC-CChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee
Q 011959 324 AYGGR-RDIMEMVAPAGPMYQAGTLS-GNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (474)
Q Consensus 324 ~~~~~-~~i~~~~~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (474)
|++++ +.+.+.+.. .....+.. .+...++++....+...+ ++..+.++++.+.+.+.++.... ++....+.
T Consensus 249 ~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~p~ 323 (394)
T d1c7na_ 249 NIIIKNPDIRERFTK---SRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHP--EIKAPLIE 323 (394)
T ss_dssp EEECCCHHHHHHHHH---HHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCT--TSBCCCCS
T ss_pred cccccChhhhhhhhh---hhhhccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhcccc--ceeecCCC
Confidence 99765 456665542 21222222 223333333333332211 23334444444444444443321 22222233
Q ss_pred eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC------CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
.|.++++.+..... ...++++.|+++ ||.+.|+. .+++|+++..++|+|++++++|+++++
T Consensus 324 g~~~~~~~~~~~~~------------~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l~ 391 (394)
T d1c7na_ 324 GTYLQWIDFRALKM------------DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALK 391 (394)
T ss_dssp BSSEEEEECGGGCC------------CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECCCCCC------------CHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 45566776643111 125678888766 99998752 345799998899999999999999998
Q ss_pred hC
Q 011959 473 QI 474 (474)
Q Consensus 473 ~~ 474 (474)
++
T Consensus 392 ~L 393 (394)
T d1c7na_ 392 DL 393 (394)
T ss_dssp HH
T ss_pred hc
Confidence 64
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=2.3e-27 Score=232.88 Aligned_cols=329 Identities=18% Similarity=0.172 Sum_probs=214.2
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhc
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT 179 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~ 179 (474)
.||+..| ++-.-.+|.+++|+++.+++...|+.+ ....+|.+.+++++. +.++|++++|+++++..+++. ...
T Consensus 27 ~I~ls~g---~p~~~~p~~i~~al~~~l~~~~~Y~~~-~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~--l~~ 100 (368)
T d1v2da_ 27 AVNLGQG---FPSNPPPPFLLEAVRRALGRQDQYAPP-AGLPALREALAEEFAVEPESVVVTSGATEALYVLLQS--LVG 100 (368)
T ss_dssp CEECCCC---SCSSCCCHHHHHHHHHHTTTSCSCCCT-TCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHH--HCC
T ss_pred CEEecCC---CCCCCCCHHHHHHHHHHhhcccCCCCC-cCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhc--ccc
Confidence 4777776 443236899999999988765444322 223455555555554 578999999999999999984 234
Q ss_pred CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCC
Q 011959 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (474)
.++.|++.+++|+.... .....|..+....++... +... -|++.+++.+++ .++++++..++|++
T Consensus 101 ~~d~v~~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~--------~~~~---~d~~~l~~~~~~---~~~~i~~~~p~NPt 165 (368)
T d1v2da_ 101 PGDEVVVLEPFFDVYLP-DAFLAGAKARLVRLDLTP--------EGFR---LDLSALEKALTP---RTRALLLNTPMNPT 165 (368)
T ss_dssp TTCEEEEEESCCTTHHH-HHHHTTCEEEEEECEEET--------TEEE---CCHHHHHTTCCT---TEEEEEEESSCTTT
T ss_pred ccccccccCCcchhhhh-HHHhcCCccceecccccc--------cccc---CCHHHHHHhhcc---CceEEEEcCCCCcc
Confidence 45677777888876443 333334322211111000 0111 178988888764 45666665567889
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccC--CCCceeehhhhcC-CCcceEEEEecHHHHHhh
Q 011959 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG--VTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMV 335 (474)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g--~~pdi~t~sK~l~-~G~~iG~~~~~~~i~~~~ 335 (474)
|.+.+.++ +++|.++|++||+++|+||+|..+ ............ ....+.++||.++ +|+|+||+++++++++.+
T Consensus 166 G~~~~~~~-l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~ 244 (368)
T d1v2da_ 166 GLVFGERE-LEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRL 244 (368)
T ss_dssp CCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHH
T ss_pred cccCCHHH-HHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccchh
Confidence 98887666 999999999999999999999755 332222111111 1122447999888 699999999999988877
Q ss_pred cCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcC
Q 011959 336 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 415 (474)
Q Consensus 336 ~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~ 415 (474)
. ......+.+.+++.+.++.++++.....++++++++..+..++.+.+.+.++++....+..|.++++.+...
T Consensus 245 ~---~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~~---- 317 (368)
T d1v2da_ 245 A---GMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGW---- 317 (368)
T ss_dssp H---HHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTTC----
T ss_pred h---hhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhcCcEEecCCceeEEEEeCCcc----
Confidence 6 333444667788888888888765544455555444444433444444444565544444567777766321
Q ss_pred cccccccchHHHHHHHHHHHHCCeEecccC--------CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 416 FEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
...+.|.++||++.|+. .+++|+++..++|++++++++|++++
T Consensus 318 -------------~~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 318 -------------DAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV 368 (368)
T ss_dssp -------------CHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred -------------HHHHHHHhCCEEEEechhhCCCCCCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence 12345668999998752 24579998889999999999999874
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=6.2e-27 Score=229.17 Aligned_cols=335 Identities=13% Similarity=0.078 Sum_probs=213.6
Q ss_pred EeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCCC--CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHh
Q 011959 102 IDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA--PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLA 175 (474)
Q Consensus 102 iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~--~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~al~~a 175 (474)
|+|..| .+.-..+|.|++|+.+.+..+. .|.. ..++++++++++.++++ ++++|++|+|+++++..+++
T Consensus 2 ~~~~~~---~~df~~p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~-- 76 (361)
T d1d2fa_ 2 LPFTIS---DMDFATAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIR-- 76 (361)
T ss_dssp EECCSS---SCSSCCCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHH--
T ss_pred cCcCCC---CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhh--
Confidence 566665 4433368999999999987643 2221 13678888888888765 46899999999999999998
Q ss_pred Hhhc-CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011959 176 RAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (474)
Q Consensus 176 r~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (474)
.+. .+++|++.+++|.++. ......|..+..+......+ .. ..|++.+++.+.+. +++++++.+
T Consensus 77 -~l~~~gd~Vlv~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~--------~~---~~d~~~~~~~~~~~--~~~~i~l~~ 141 (361)
T d1d2fa_ 77 -QWSETGEGVVIHTPAYDAFY-KAIEGNQRTVMPVALEKQAD--------GW---FCDMGKLEAVLAKP--ECKIMLLCS 141 (361)
T ss_dssp -HSSCTTCEEEEEESCCHHHH-HHHHHTTCEEEEEECEECSS--------SE---ECCHHHHHHHHTST--TEEEEEEES
T ss_pred -hccccccccccccccccchh-HHHHhhcceEEeeccccccc--------cc---ccccccchhhcccC--CceeEEecc
Confidence 444 4578999999987753 33334444322211100000 00 12799999888753 677887777
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cccccCCCCce---eehhhhcC-CCcceEEEEec
Q 011959 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPDL---TTLGKIIG-GGLPVGAYGGR 328 (474)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pdi---~t~sK~l~-~G~~iG~~~~~ 328 (474)
++|++|.+.+.++ +++|.++|++||++||+||+|.+| +.+... ...... ..+. .++||.++ +|+|+||+...
T Consensus 142 p~NPTG~~~s~~~-~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~v~~~s~SK~~~~~g~R~g~~~~~ 219 (361)
T d1d2fa_ 142 PQNPTGKVWTCDE-LEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVA-RGDWALLTSGSKSFNIPALTGAYGIIE 219 (361)
T ss_dssp SCTTTCCCCCTTH-HHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTC-CSSEEEEECSHHHHTCGGGCCEEEEEC
T ss_pred cccccccccchhh-hhhhhhhhhhhheeeeeccccccccccccccccccccc-ccccccccccccccccccccceeeecc
Confidence 7888998887777 999999999999999999999988 544322 111111 1233 36899998 79999998654
Q ss_pred -HHHHHhhcCCCCcc-cccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeE
Q 011959 329 -RDIMEMVAPAGPMY-QAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMF 404 (474)
Q Consensus 329 -~~i~~~~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~ 404 (474)
+...+.... ... ..+..+.+..++.+++.+++...+ +.....++++.+.+.+.+.+.... +....+..|.++
T Consensus 220 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--~~~~~p~gg~~~ 295 (361)
T d1d2fa_ 220 NSSSRDAYLS--ALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPE--LNWQIPQSTYLA 295 (361)
T ss_dssp SHHHHHHHHH--HHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSS--CCCCCCSBCSEE
T ss_pred hhHHHHHHhh--hcccccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhccc--ccccccCceeEE
Confidence 333232211 111 112223344555555555553322 334444555555555555544332 222233446667
Q ss_pred EEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC------CcceEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
++++.... ....++++.|+++ ||++.|+. .+++|+++..+++++++++++|.++++++
T Consensus 296 ~~~l~~~~------------~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~l 360 (361)
T d1d2fa_ 296 WLDLRPLN------------IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAV 360 (361)
T ss_dssp EEECGGGC------------CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEccCCC------------CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 77764211 1125678777765 99998762 23579998889999999999999999864
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.95 E-value=6.6e-28 Score=238.95 Aligned_cols=343 Identities=14% Similarity=0.041 Sum_probs=219.4
Q ss_pred cCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 167 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA 167 (474)
.+|+++||+..|-... ..+ .++.+++++.+.++.+. .|+. ..++++++++++.+.++ ..+++++++|++++
T Consensus 27 ~~G~~vi~l~~G~P~~-~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~ 105 (395)
T d1xi9a_ 27 KKGIKVIRLNIGDPVK-FDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 105 (395)
T ss_dssp HTTCCCEECCCCCGGG-TTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HCCCCeEECCCCCCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchh
Confidence 4588899998883221 233 57889999999998753 3432 35678888888887764 46799999999999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
+..+++. ....++.|++.+|+|+.+... ....|..+..++.....++ . -|++++++.+. +++
T Consensus 106 ~~~~~~~--~~~~Gd~vlv~~P~y~~~~~~-~~~~g~~~v~v~~~~~~~~---------~---~d~~~~~~~~~---~~~ 167 (395)
T d1xi9a_ 106 LQLIFGA--LLDPGDEILVPGPSYPPYTGL-VKFYGGKPVEYRTIEEEDW---------Q---PDIDDIRKKIT---DRT 167 (395)
T ss_dssp HHHHHHH--HCCTTCEEEEEESCCHHHHHH-HHHTTCEEEEEEEEGGGTS---------E---ECHHHHHHHCC---TTE
T ss_pred hhhhhhh--hcCCCCEEEEcCCccccchhh-hhhcCCEEEEEeccccccc---------c---chHHHHHHhhc---ccc
Confidence 9999884 334567899999999874443 3333432211111000010 0 17888888775 356
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhhcC-CCcce
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPV 322 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~i 322 (474)
+++++..++|++|.+.+.++ +++|.++|++||++||.||+|..+ ..+.........-...++ +|||.++ +|||+
T Consensus 168 ~~v~l~~P~NPTG~~~s~~~-~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRv 246 (395)
T d1xi9a_ 168 KAIAVINPNNPTGALYDKKT-LEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRL 246 (395)
T ss_dssp EEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCC
T ss_pred cEEEecCCCCCccchhhHHH-HHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhc
Confidence 66666666788998887666 999999999999999999999877 444332222222222333 7999999 79999
Q ss_pred EEEEec--HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE-
Q 011959 323 GAYGGR--RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG- 397 (474)
Q Consensus 323 G~~~~~--~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v- 397 (474)
||++.. .+.+..+..........+.+.+.+++.++..+++..++ .+.++.++++.+.+.+.|+ +.+.....
T Consensus 247 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~ 322 (395)
T d1xi9a_ 247 GYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLN----EIPGISTTK 322 (395)
T ss_dssp EEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHH----TSTTEECCC
T ss_pred EeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH----hCCCceecC
Confidence 998542 22222221100111223556677888888777753211 2233444445555555554 34433222
Q ss_pred eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHH
Q 011959 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~ 470 (474)
+..|.++|+++...... + ..++++.++ ++||++.|+. .+++|++++.++|++++++++|+++
T Consensus 323 p~gg~~~~~~l~~~~~~--------~---~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~~~ 391 (395)
T d1xi9a_ 323 PQGAFYIFPKIEVGPWK--------N---DKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKF 391 (395)
T ss_dssp CCBSSEECCEECSCSCS--------S---HHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHH
T ss_pred CCeeEEEeEECCCCCCC--------C---HHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecCCHHHHHHHHHHHHHH
Confidence 34567777777532111 1 134555555 6799998863 3468999988999999999999999
Q ss_pred Hhh
Q 011959 471 LRQ 473 (474)
Q Consensus 471 ~~~ 473 (474)
+++
T Consensus 392 l~e 394 (395)
T d1xi9a_ 392 MKE 394 (395)
T ss_dssp HHH
T ss_pred Hhc
Confidence 975
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=2e-26 Score=226.81 Aligned_cols=331 Identities=15% Similarity=0.142 Sum_probs=213.4
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~ 169 (474)
.|+++||+..| ++--..++.+++++.+.+.++. .|+ +..++++++++++.+..+ +.+++++++|+++|+.
T Consensus 26 ~G~~vI~l~~G---~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~ 102 (375)
T d1o4sa_ 26 KGEDVINLTAG---EPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 102 (375)
T ss_dssp TTCCCEECCCS---SCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred CCCCeEECCCc---CCCCCCCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHH
Confidence 35567887777 3321257899999999887753 333 235777888888876553 4789999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (474)
.+++. ....++.|++.+|+|..+..... ..+............+. ..|.+.++.... +++++
T Consensus 103 ~~~~~--l~~~gd~vlv~~P~y~~~~~~~~-~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~---~~~~~ 164 (375)
T d1o4sa_ 103 NAFMA--LLDPGDEVIVFSPVWVSYIPQII-LAGGTVNVVETFMSKNF------------QPSLEEVEGLLV---GKTKA 164 (375)
T ss_dssp HHHHH--HCCTTCEEEEEESCCTTHHHHHH-HTTCEEEEEECCGGGTT------------CCCHHHHHHTCC---TTEEE
T ss_pred HHHHH--HhCCCCEEEEccCccccchhhhh-ccccccccccccccccc------------cchhHHHHHhhc---cCccE
Confidence 99983 22345788888998877543333 33322211111100010 015666655443 35666
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cccccCCCCc---eeehhhhcC-CCcceE
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYFGVTPD---LTTLGKIIG-GGLPVG 323 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~g~~pd---i~t~sK~l~-~G~~iG 323 (474)
+++..++|++|.+.+.++ +++|.++|++|+++||.||+|..+ ..+... .....+.... +.++||.++ +|+|+|
T Consensus 165 ~~l~nP~NPTG~~~s~~~-~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G 243 (375)
T d1o4sa_ 165 VLINSPNNPTGVVYRREF-LEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVG 243 (375)
T ss_dssp EEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCE
T ss_pred EEEeCCCCCccCCCCHHH-HHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccc
Confidence 666666888998887655 999999999999999999999766 333221 1122222223 347999999 899999
Q ss_pred EEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeecee
Q 011959 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403 (474)
Q Consensus 324 ~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~ 403 (474)
|+++++++++.+.. .....+...+...+..+...++.. .....+.++++.+.+.+.|++. ++....+..|.+
T Consensus 244 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~l~~~----g~~~~~p~gg~f 315 (375)
T d1o4sa_ 244 YLISSEKVATAVSK---IQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM----GVKFVEPEGAFY 315 (375)
T ss_dssp EEECCHHHHHHHHH---HHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT----TCCCCCCSBSSE
T ss_pred cccccccchhhhhh---hhccccccccccchhhhhhhcccc-hhhhHHHHHHHHHHHHHHHHhc----CceEecCCccEE
Confidence 99999998887762 222333344444444433322211 1345555666666666666654 433333445667
Q ss_pred EEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
+|+.+..+ ..+++..|+ ++||++.|+. .+++|+++..+++++++++++|+++++
T Consensus 316 ~~~~~~~~---------------~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 316 LFFKVRGD---------------DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLN 374 (375)
T ss_dssp EEEECSSC---------------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred EEEECCCC---------------HHHHHHHHHHhCCEEEEEccccCCCCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 77776421 134455544 6799999863 346899998899999999999999986
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.95 E-value=2.9e-26 Score=227.73 Aligned_cols=333 Identities=13% Similarity=0.126 Sum_probs=214.1
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhc----CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~ 169 (474)
.+|||..|+.. +--.+.+.+.+++.+.++.. ..|+ +..+++..+++++.+.++ +.++|++|+|+++++.
T Consensus 30 ~~i~l~~G~P~-~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~ 108 (403)
T d1wsta1 30 DVISLAGGLPA-PETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALD 108 (403)
T ss_dssp SCEECCCCCCC-GGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHH
T ss_pred CcEECCCCCCC-ccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHH
Confidence 46788777432 11123456777777776542 2243 356788889999887664 5789999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC----CHHH----HHHHHh
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN----DVSA----LENLFE 241 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~----d~~~----le~~l~ 241 (474)
.+++. ....++.|++.+++|..+.... ...|. +...++.+ +... .++...
T Consensus 109 ~~~~~--l~~~gd~v~~~~P~y~~~~~~~-~~~g~-------------------~~~~v~~~~~~~~~~~~~~~~~~~~~ 166 (403)
T d1wsta1 109 LIGRV--FLNPGDPIVVEAPTYLAAIQAF-KYYDP-------------------EFISIPLDDKGMRVDLLEEKLEELRK 166 (403)
T ss_dssp HHHHH--HCCTTCEEEEEESCCHHHHHHH-HTTCC-------------------EEEEEEEETTEECHHHHHHHHHHHHH
T ss_pred HHHHH--HhhcCCccccCCCcchhhhHHH-hhccc-------------------cceeEeecccCCccccccccchhhhh
Confidence 99984 2334678999999998754433 22222 12233221 2222 233333
Q ss_pred cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-cccc---CCCCceeehhhhc
Q 011959 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYF---GVTPDLTTLGKII 316 (474)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~---g~~pdi~t~sK~l 316 (474)
.......++++.+++|++|.+.+.++ +++|.++|++||++||+||+|..| ..+.... .... +...-+.++||.+
T Consensus 167 ~~~~~~~~~~~~~p~NPtG~~~s~~~-l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 245 (403)
T d1wsta1 167 QGKRVKIVYTVSTFQNPAGVTMSVDR-RKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKIL 245 (403)
T ss_dssp TTCCCCEEEECCSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTT
T ss_pred ccccccccccccccCCCCCccCCHHH-HHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEcccccee
Confidence 43345556666667777898887666 999999999999999999999888 5543221 1111 2222234799999
Q ss_pred CCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 317 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 317 ~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
++|+|+||+++++++++.+.. .....+.+.+...+.+..+.+.....+ .+.+.+.++.+.+.+.|.+... .+
T Consensus 246 ~~G~RiG~~i~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~-~~ 321 (403)
T d1wsta1 246 APGFRIGWVAAHPHLIRKMEI---AKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMP-EG 321 (403)
T ss_dssp CGGGCCEEEEECHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-TT
T ss_pred cCcccccccccchHHHHHHHH---HHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhcc-CC
Confidence 889999999999999887752 223334455666666555554432222 2334444444444555544321 13
Q ss_pred CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--------CcceEEecC-CcHHHHHHH
Q 011959 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLA-HSSDDIQHT 463 (474)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~~~~~-~t~e~i~~~ 463 (474)
+....+..|.++++.+.+.. ....+.+.|.++||++.|+. .+++|++++ .++++++++
T Consensus 322 ~~~~~p~gg~~~~~~~~~~~-------------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~a 388 (403)
T d1wsta1 322 VEWTKPEGGMFVRVTLPEGI-------------DTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREG 388 (403)
T ss_dssp CEECCCSBSSEEEEECCTTC-------------CTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHH
T ss_pred eEEeCCCceeEEEEECCCCC-------------CHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHH
Confidence 33344556778888775321 11357788999999998762 235788876 689999999
Q ss_pred HHHHHHHHhh
Q 011959 464 ITAAEKVLRQ 473 (474)
Q Consensus 464 l~~l~~~~~~ 473 (474)
+++|.+++++
T Consensus 389 l~rl~~~l~~ 398 (403)
T d1wsta1 389 VRRLAETIKE 398 (403)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5.1e-26 Score=227.02 Aligned_cols=359 Identities=13% Similarity=0.061 Sum_probs=226.4
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---CCC---CCCHHHHHHHHHHHhhCC-C---CCeEEEeCCHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFG---APCLLENVLAEMVISAVP-S---IEMVRFVNSGTEA 167 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~---~~~~~~~~la~~l~~~~~-~---~~~v~~~~sGseA 167 (474)
+..+||+..| ++--..++.+++++++++.++. .|+ +..++++.+++++.+.++ . .++|++|+|+++|
T Consensus 24 ~~dvI~l~~G---~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~a 100 (418)
T d1w7la_ 24 EHDVVNLGQG---FPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 100 (418)
T ss_dssp TSCCEECCCC---SCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred CCCCEECCCC---CCCCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHH
Confidence 4457898888 4422257889999999887532 233 235688888888887764 2 2579999999999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCC-CCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~-~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
+..+++. ....++.|++.+++|+.+... +...|....... .+............-+. -|.+++..... +.
T Consensus 101 l~~~~~~--l~~~g~~vlv~~p~~~~y~~~-~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~---~~ 171 (418)
T d1w7la_ 101 LFTAFQA--LVDEGDEVIIIEPFFDCYEPM-TMMAGGRPVFVSLKPGPIQNGELGSSSNWQ---LDPMELAGKFT---SR 171 (418)
T ss_dssp HHHHHHH--HCCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECEECC---CCSEEGGGEE---CCHHHHHHHCC---TT
T ss_pred HHHHHHh--hccCCceeeccccccchhHHH-HHHcCCEeeccccccccccccccccccCcc---cchhhhhcccc---cc
Confidence 9999984 334567788888888875443 333333221111 01000000000000000 14444444332 46
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccc-cccCCCCce---eehhhhcC-CC
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-EYFGVTPDL---TTLGKIIG-GG 319 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~-~~~g~~pdi---~t~sK~l~-~G 319 (474)
++++++...+|++|.+.+.++ +++|.++|++|++++|+||+|.+| +.+.. ... +..+..+.+ .++||.++ +|
T Consensus 172 ~~~i~~~~p~NPtG~~~s~~~-~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG 250 (418)
T d1w7la_ 172 TKALVLNTPNNPLGKVFSREE-LELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG 250 (418)
T ss_dssp EEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG
T ss_pred ccceeccCcCCcccccccHHH-HHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCC
Confidence 777777777788888887666 999999999999999999999888 54432 111 222222333 37999998 79
Q ss_pred cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHHHHhhhcCCe
Q 011959 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---E--PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (474)
+|+||+++++++++.+. ......+++.+.+++.++.++|.... + .++..+.++..+..++.|.+.+.+.++.
T Consensus 251 ~RvG~~v~~~~~~~~l~---~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~ 327 (418)
T d1w7la_ 251 WKVGWVLGPDHIMKHLR---TVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLK 327 (418)
T ss_dssp GCCEEEECCHHHHHHHH---HHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred Ccccccccchhhhhhhc---cccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcCCc
Confidence 99999999999988876 33344567778888888887775422 1 3455555555555555555555556666
Q ss_pred eEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC-----------CcceEEecCCcHHHHHH
Q 011959 395 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDDIQH 462 (474)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-----------~~~~~~~~~~t~e~i~~ 462 (474)
...+..|.++|+.+.............-+.....++++.|+ ++||.+.|+. .+++|++++.+++++++
T Consensus 328 ~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~~~~~l~~ 407 (418)
T d1w7la_ 328 PLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQA 407 (418)
T ss_dssp EEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHH
T ss_pred ccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEcCCHHHHHH
Confidence 55666777888887431000000000001112245666665 5699998763 23588998889999999
Q ss_pred HHHHHHHHHh
Q 011959 463 TITAAEKVLR 472 (474)
Q Consensus 463 ~l~~l~~~~~ 472 (474)
++++|++...
T Consensus 408 a~~rl~~~~~ 417 (418)
T d1w7la_ 408 MDEKLRKWKV 417 (418)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999998754
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.94 E-value=2.4e-26 Score=224.44 Aligned_cols=322 Identities=17% Similarity=0.167 Sum_probs=208.6
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHh
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~a 175 (474)
...++|||++|. +++| .+|.+++++.+.+.....| ++....+|.+.++++++ ..+.|++++|+++++..++.
T Consensus 20 ~p~~~idls~~~--np~~-~p~~~~~a~~~~~~~~~~Y--p~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~-- 92 (355)
T d1lc5a_ 20 SPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIERY--PDADYFHLHQALARHHQVPASWILAGNGETESIFTVAS-- 92 (355)
T ss_dssp CGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGGSC--CCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH--
T ss_pred ChhheEEccCCC--CCCC-CCHHHHHHHHHHHHHhccC--CCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHh--
Confidence 444689998875 7788 5788999999987765444 33333567777777776 56789999999998887766
Q ss_pred HhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
...+ +.+++..+.|+.+.. .....+.++...++....+. ...+.+++.+. .++++|+++++
T Consensus 93 -~~~~-~~~~v~~p~~~~~~~-~~~~~~~~~~~v~~~~~~~~-------------~~~~~~~~~~~---~~~~~v~l~nP 153 (355)
T d1lc5a_ 93 -GLKP-RRAMIVTPGFAEYGR-ALAQSGCEIRRWSLREADGW-------------QLTDAILEALT---PDLDCLFLCTP 153 (355)
T ss_dssp -HHCC-SEEEEEESCCTHHHH-HHHHTTCEEEEEECCGGGTT-------------CCCTTHHHHCC---TTCCEEEEESS
T ss_pred -hhcc-ccccccCCccceecc-ccccccccceeeeeeccCCc-------------cceeeeeeccc---cccceeeeecc
Confidence 4444 455566777765432 33333333322222211111 11233444433 35667777666
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCce---eehhhhcC-CCcceEEEEecHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL---TTLGKIIG-GGLPVGAYGGRRD 330 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi---~t~sK~l~-~G~~iG~~~~~~~ 330 (474)
+|++|.+.+.++ +++|.++|++|++++|+||+|..| ..+..... .....+++ .+|||+++ +|+|+||++++++
T Consensus 154 ~NPtG~~~~~e~-l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~ 231 (355)
T d1lc5a_ 154 NNPTGLLPERPL-LQAIADRCKSLNINLILDEAFIDFIPHETGFIP-ALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDD 231 (355)
T ss_dssp CTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGG-GCTTCTTEEEEEESTTTTTCTTTCCEEEECCCH
T ss_pred cCcccccchhhh-hhhhhhhccccccccccccceeeeeeecccccc-cccccccceeecccccccccccccccceeccch
Confidence 888998876555 999999999999999999999887 44332221 12222333 37999999 8999999998765
Q ss_pred -HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEE
Q 011959 331 -IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408 (474)
Q Consensus 331 -i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~ 408 (474)
+.+.++. +..+++.+.+++.++.++|+.... ...++++++..+++.+.|.+ .+.....++.|+++++.+
T Consensus 232 ~~~~~~~~-----~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~p~~~~f~~~~~ 302 (355)
T d1lc5a_ 232 AAMARMRR-----QQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQ----LPLLTVYPGRANYLLLRC 302 (355)
T ss_dssp HHHHHHHH-----HSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHT----STTEEECCCSSSEEEEEE
T ss_pred hhhHHHHh-----hcCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhh----cCCcEECCCCCEEEEEEC
Confidence 4454442 234567788888888887752111 23344444555555554443 333334566778888776
Q ss_pred ecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
..+. .++++.|+++||+++++. .+++|+++. +++++++++++|++++
T Consensus 303 ~~~~---------------~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~-~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 303 ERED---------------IDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL 355 (355)
T ss_dssp SCTT---------------CCHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred CCCH---------------HHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC-CHHHHHHHHHHHHHhC
Confidence 4321 357788999999998753 235788764 8999999999999864
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=3.6e-26 Score=226.00 Aligned_cols=332 Identities=15% Similarity=0.088 Sum_probs=211.2
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~ 169 (474)
.+|+.+||+..| ++---.++.+++++.+.......|+ +..++++.+++++.+.++ ..++|++|+|+++++.
T Consensus 25 ~~g~~vi~l~~G---~p~~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~ 101 (389)
T d2gb3a1 25 KRGVRIHHLNIG---QPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAIL 101 (389)
T ss_dssp HTTCEEEECSSC---CCCSCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHH
T ss_pred HcCCCEEECCCC---CCCCCCCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccc
Confidence 357788999887 4322247788898887654444443 235778889999988765 4789999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (474)
.+++. ....++.|++.+++|...... ....|.............. .+.+.+. ....+++++
T Consensus 102 ~~~~~--l~~~gd~V~i~~P~y~~~~~~-~~~~g~~~~~~~~~~~~~~-------------~~~~~~~---~~~~~~~~~ 162 (389)
T d2gb3a1 102 FSFAV--IANPGDEILVLEPFYANYNAF-AKIAGVKLIPVTRRMEEGF-------------AIPQNLE---SFINERTKG 162 (389)
T ss_dssp HHHHH--HCCTTCEEEEEESCCTHHHHH-HHHHTCEEEEEECCGGGTS-------------CCCTTGG---GGCCTTEEE
T ss_pred ccccc--cccCCCeEEEeCCCCcccccc-ccccCcccccccccccccc-------------chhhhhh---hhcccCccE
Confidence 99984 234567888999998765433 3333332211111100000 0112222 222346778
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCc---eeehhhhcC-CCcceEE
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD---LTTLGKIIG-GGLPVGA 324 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pd---i~t~sK~l~-~G~~iG~ 324 (474)
+++..++|++|.+.+.++ +++|.++|++||++||.||+|..+ ..+........ ..+. +.++||.++ +|+|+||
T Consensus 163 ~~l~nP~NPtG~~~s~~~-~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~-~~~~~~v~~s~sK~~~~~GlRiG~ 240 (389)
T d2gb3a1 163 IVLSNPCNPTGVVYGKDE-MRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSI-ESDKVVVIDSVSKKFSACGARVGC 240 (389)
T ss_dssp EEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGS-CCTTEEEEEESTTTTTCGGGCCEE
T ss_pred EEeCCCCccccccchHHH-HHHHHhhcccCCEEEEEecccccccccccccccccc-ccccccccccccccccCcccceee
Confidence 777777888998886555 999999999999999999999888 54433222211 1222 236899998 6999999
Q ss_pred EEecHH-HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE-Eeee
Q 011959 325 YGGRRD-IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYI 400 (474)
Q Consensus 325 ~~~~~~-i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~ 400 (474)
++++.+ +...+. ....+.++.+++.+.++.+.+...++ +..+++++++.+.+.+.|+ +++.... .+..
T Consensus 241 ~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~----~~~~~~~~~p~~ 312 (389)
T d2gb3a1 241 LITRNEELISHAM----KLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLE----EHGLKRFTKPSG 312 (389)
T ss_dssp EECSCHHHHHHHH----HHHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH----HTTCCCBCCCSB
T ss_pred eeccchhHHHHHh----hhhhccccccccccccccccccccchhcccccccccccchhhhhhhh----hhccccccCCCc
Confidence 988665 444433 12233556677777777666542211 2333444444444554444 4454332 3456
Q ss_pred ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC------CeEecccC---------CcceEEecCCcHHHHHHHHH
Q 011959 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE------GVYFAPSQ---------FEAGFTSLAHSSDDIQHTIT 465 (474)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------Gv~v~~~~---------~~~~~~~~~~t~e~i~~~l~ 465 (474)
|.++++.+... + ..++++.|+++ ||.+.|+. .+++|++++.++++++++++
T Consensus 313 g~~~~~~lp~~-----------~---~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~ 378 (389)
T d2gb3a1 313 AFYITAELPVE-----------D---AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAID 378 (389)
T ss_dssp SSEEEEECSSS-----------C---HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHH
T ss_pred eEEEEEeCCCC-----------C---HHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEcCCHHHHHHHHH
Confidence 77777776321 1 24677777654 67776652 24578998899999999999
Q ss_pred HHHHHHhh
Q 011959 466 AAEKVLRQ 473 (474)
Q Consensus 466 ~l~~~~~~ 473 (474)
+|.+++++
T Consensus 379 ~L~~~lk~ 386 (389)
T d2gb3a1 379 VLMEGLKM 386 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.94 E-value=1.5e-25 Score=223.31 Aligned_cols=345 Identities=10% Similarity=0.023 Sum_probs=212.3
Q ss_pred EcCCCEEEeccCChhhccCCC---CCHHHHHHHHHHHHhcCC--CC---CCCHHHHHHHHHHHhhCC---------CCCe
Q 011959 95 DIDGNEYIDYVGSWGPAIIGH---ADDQVLAALGETMKKGTS--FG---APCLLENVLAEMVISAVP---------SIEM 157 (474)
Q Consensus 95 d~dG~~~iD~~~~~~~~~lG~---~~p~v~~a~~~~~~~~~~--~~---~~~~~~~~la~~l~~~~~---------~~~~ 157 (474)
+..++.+|||..|-. .+.. ..+.+++++.+.++.... |+ +..++++++++++.+++. ..++
T Consensus 26 ~~~~~~vI~L~~G~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~ 103 (412)
T d1bw0a_ 26 SPSPKPIIKLSVGDP--TLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDN 103 (412)
T ss_dssp CCSCSCCEECCCCCT--TTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGG
T ss_pred CCCCCCcEECcCCCC--CCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCe
Confidence 345667889887732 1222 357788999888776332 32 245788889998887641 4679
Q ss_pred EEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHH
Q 011959 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (474)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le 237 (474)
|++|+|+++|+..+++. ....++.|++.+|+|+++. ..+...|..+...+.....+. ..+++.++
T Consensus 104 I~it~G~~~al~~~~~~--l~~~Gd~Vlv~~P~y~~~~-~~~~~~G~~~~~v~~~~~~~~------------~~~~~~l~ 168 (412)
T d1bw0a_ 104 VVLCSGGSHGILMAITA--ICDAGDYALVPQPGFPHYE-TVCKAYGIGMHFYNCRPENDW------------EADLDEIR 168 (412)
T ss_dssp EEEESHHHHHHHHHHHH--HCCTTCEEEEEESCCTHHH-HHHHHTTCEEEEEEEEGGGTT------------EECHHHHH
T ss_pred EEEecccccchhhhhhh--hhccccceeeeeccchhhh-hhhhccCcccccccccccccc------------chhhHHHH
Confidence 99999999999999984 2345678999999998754 334444543322111000010 01678887
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccc-ccc---CCCCcee-
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-EYF---GVTPDLT- 310 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~-~~~---g~~pdi~- 310 (474)
+.+. +.++++++..++|++|.+.+.++ +++|.++|++|+++||+||+|.+| ..+.. ... ... ......+
T Consensus 169 ~~~~---~~~~~~~l~np~NPtG~~~~~~~-~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (412)
T d1bw0a_ 169 RLKD---DKTKLLIVTNPSNPCGSNFSRKH-VEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVI 244 (412)
T ss_dssp HHCC---TTEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEE
T ss_pred hhhh---ccccccccccccccccccchhhh-ccccccccccCCeeeechhhHHHhccCCCCCcccccccccccccccccc
Confidence 7665 35777777777788888886555 999999999999999999999988 55421 111 111 1111222
Q ss_pred --ehhhhcC-CCcceEEEEecHH------HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011959 311 --TLGKIIG-GGLPVGAYGGRRD------IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 381 (474)
Q Consensus 311 --t~sK~l~-~G~~iG~~~~~~~------i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~ 381 (474)
++||.++ +|||+||+++++. ++.... .. ...+.+.++..++++.+.+.. ..++..+++++..+..+
T Consensus 245 ~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r 319 (412)
T d1bw0a_ 245 LGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLK---RV-GMLVCGPCTVVQAALGEALLN-TPQEHLDQIVAKIEESA 319 (412)
T ss_dssp EEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHH---HH-HHHHTCSCHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHH
T ss_pred ccccCccCccCCCCcccccccchhhcchhhhhhhc---cc-cccccCCchhhhhhccccccc-ccccccccccchhHHHH
Confidence 6899999 7999999987643 222222 11 112233445555544444321 11223333333333333
Q ss_pred HHHHHHhhhc-CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC----CcceEEecCC
Q 011959 382 QGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ----FEAGFTSLAH 455 (474)
Q Consensus 382 ~~L~~~~~~~-~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~----~~~~~~~~~~ 455 (474)
+.+.+.+.+. ++....+..|.++++.+......+ .....++++.|++ +||++.|+. .+++|++++.
T Consensus 320 ~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~~--------~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~ 391 (412)
T d1bw0a_ 320 MYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRD--------IKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTR 391 (412)
T ss_dssp HHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSS--------CCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS
T ss_pred HHHHHHHHHhcCceecCCCCceEEEEeCChhhcCC--------CCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEcC
Confidence 3343333333 333333455667777764221111 1112467777765 599999863 3468999999
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011959 456 SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~ 473 (474)
+++++++++++|++++++
T Consensus 392 ~~e~l~eal~Rl~~~l~~ 409 (412)
T d1bw0a_ 392 PVEVYREAVERIKAFCQR 409 (412)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999999875
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=1.3e-25 Score=224.14 Aligned_cols=337 Identities=12% Similarity=0.134 Sum_probs=220.6
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc----CCCC---CCCHHHHHHHHHHHhhCC----CCCeEEEeCCHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFG---APCLLENVLAEMVISAVP----SIEMVRFVNSGT 165 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~---~~~~~~~~la~~l~~~~~----~~~~v~~~~sGs 165 (474)
.++++|||..|... +-=...+.+.+++++.++.. ..|+ +..++++++++++.+.++ ..++|++|+|++
T Consensus 36 ~~~~~I~l~~G~Pd-~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~ 114 (420)
T d1vp4a_ 36 ADKDAISFGGGVPD-PETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ 114 (420)
T ss_dssp TSTTCEECCCCSCC-GGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred CCCCcEecCCcCCC-CccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchh
Confidence 45678999887431 11123466777777766542 2233 346788888888887653 467999999999
Q ss_pred HHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC----CHHHHHHHHh
Q 011959 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN----DVSALENLFE 241 (474)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~----d~~~le~~l~ 241 (474)
+|+..++.. ...+++.|++.+++|..+. ......|.. +..+|.+ |++.++..+.
T Consensus 115 ~al~~~~~~--~~~~Gd~Vlv~~P~y~~~~-~~~~~~g~~-------------------~~~~~~~~~~~~~~~l~~~~~ 172 (420)
T d1vp4a_ 115 QALDLIGKL--FLDDESYCVLDDPAYLGAI-NAFRQYLAN-------------------FVVVPLEDDGMDLNVLERKLS 172 (420)
T ss_dssp HHHHHHHHH--HCCTTCEEEEEESCCHHHH-HHHHTTTCE-------------------EEEEEEETTEECHHHHHHHHH
T ss_pred hhHHHHHHh--hhccccccccccccccchh-HHHHHHhhh-------------------cccccccccccccchhhhhhh
Confidence 999999983 2345678888898887643 333333332 2222221 5666655443
Q ss_pred c------CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCc----ee
Q 011959 242 N------NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD----LT 310 (474)
Q Consensus 242 ~------~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pd----i~ 310 (474)
+ ..+...++++.+.+|++|.+.+.++ +++|.++|++|++++|+||+|.+| ..+...........++ +.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~-~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~ 251 (420)
T d1vp4a_ 173 EFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEK-RKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLN 251 (420)
T ss_dssp HHHHTTCGGGEEEEEEECSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEE
T ss_pred hhHHHhhccccceeeEecCCCCccchhhhhhh-hhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEe
Confidence 1 1123345555566777888876655 999999999999999999999888 5443221111101122 22
Q ss_pred ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHH
Q 011959 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIID 386 (474)
Q Consensus 311 t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~ 386 (474)
+++|.+++|+|+||+++++++++.+.+ .....+.+.+.+.++++...++.... .+..+.++++.+.+.+.|.+
T Consensus 252 s~sk~~~~G~RiG~~~~~~~~i~~l~~---~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 328 (420)
T d1vp4a_ 252 TFSKVLAPGLRIGMVAGSKEFIRKIVQ---AKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEE 328 (420)
T ss_dssp ESTTTTCGGGCEEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhhhhhh---hhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhh
Confidence 578888889999999999999988863 22333455677777777666653211 34556667777777788877
Q ss_pred HhhhcCCeeEE-eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--------CcceEEecC-Cc
Q 011959 387 AGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLA-HS 456 (474)
Q Consensus 387 ~~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~~~~~-~t 456 (474)
.+.+.+..... +..|.++|+.+.+.. ...++.+.|.++||++.|+. .+++|++++ .+
T Consensus 329 ~~~~~~g~~~~~p~gg~f~~~~~~~~~-------------d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~ 395 (420)
T d1vp4a_ 329 YFSDIPGVKWVKSEGGLFIWLTLPEGF-------------DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPP 395 (420)
T ss_dssp HSTTSTTCEECCCSBSSEEEEECCTTC-------------CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSC
T ss_pred hhccCCCcEEecCCceEEEEEECCCCC-------------CHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeCcCC
Confidence 76555433333 344567777774321 01346678889999998862 235788875 58
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011959 457 SDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 457 ~e~i~~~l~~l~~~~~~ 473 (474)
+|++++++++|++++++
T Consensus 396 ~e~l~~a~~rL~~~l~~ 412 (420)
T d1vp4a_ 396 DEKIVEGIKRLREVVLE 412 (420)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999875
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=8.7e-25 Score=215.38 Aligned_cols=332 Identities=15% Similarity=0.113 Sum_probs=220.5
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMG 170 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~~~ 170 (474)
+.+|||..| ++.--.++.+++++.+.+.++. .|+ +..++++.+++++.+.++ ..+ +|++|+|+++|+..
T Consensus 26 ~~~i~l~~G---~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~ 102 (382)
T d1u08a_ 26 HQAINLSQG---FPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 102 (382)
T ss_dssp TTCEECCCS---SCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CCCEEccCC---CCCCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHH
Confidence 355888887 4322257899999999988753 232 235788889999888764 344 59999999999999
Q ss_pred HHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEE
Q 011959 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (474)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (474)
+++. ....++.|++.+++|+.... .....|............. ..|++++++.+.+ +++++
T Consensus 103 ~~~~--l~~~gd~vl~~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~~~~---~~~~i 163 (382)
T d1u08a_ 103 AITA--LVRNGDEVICFDPSYDSYAP-AIALSGGIVKRMALQPPHF-------------RVDWQEFAALLSE---RTRLV 163 (382)
T ss_dssp HHHH--HCCTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECCTTTC-------------CCCHHHHHHHCCT---TEEEE
T ss_pred HHhh--cccccceEEEecccccchhh-hhhhccccceecccccccc-------------cCCHHHHhhhhcc---CccEE
Confidence 9984 23446678888888887543 3333343222111111111 1178888877653 57777
Q ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-ccccc----CCCCceeehhhhcC-CCcceE
Q 011959 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF----GVTPDLTTLGKIIG-GGLPVG 323 (474)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~----g~~pdi~t~sK~l~-~G~~iG 323 (474)
++.+.+|++|.+.+.++ +++|.++|++++++++.||+|.-+ ..+... ..... +-..-+.++||.++ +|+|+|
T Consensus 164 ~l~~P~NPtG~v~~~~~-~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG 242 (382)
T d1u08a_ 164 ILNTPHNPSATVWQQAD-FAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVG 242 (382)
T ss_dssp EEESSCTTTCCCCCHHH-HHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCE
T ss_pred EECCCCccccccccccc-chhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccch
Confidence 77767788888887666 999999999999999999999655 332111 11000 11112347999998 899999
Q ss_pred EEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeecee
Q 011959 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403 (474)
Q Consensus 324 ~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~ 403 (474)
|+++++++++.+. ......+++.+.+.+.++.++++.- ++..+++++..+..++.|.+.....++....+..|.+
T Consensus 243 ~~v~~~~~~~~~~---~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~~ 317 (382)
T d1u08a_ 243 YCVAPAPISAEIR---KVHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYF 317 (382)
T ss_dssp EEECCHHHHHHHH---HHHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSE
T ss_pred hhhccchhHHHHH---hhhcccccccccccccccccccccc--hHHHHHHHHHHHhhhhhhhhhhccCCcEEecCCceEE
Confidence 9999999988876 2334456788899999998888743 3334444444444444444444444555444556667
Q ss_pred EEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC--------CcceEEecCCcHHHHHHHHHHHHH
Q 011959 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~--------~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
+|+.+..... ....+|++.|+ ++||.+.|+. .+++|++++.++|++++++++|++
T Consensus 318 ~~~~~~~~~~-----------~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 318 LLVDYSAVST-----------LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 381 (382)
T ss_dssp EEEECTTTCC-----------SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred EEEecCCCCC-----------CCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHhC
Confidence 7777643110 11245777665 6799998862 134789988899999999999875
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=5.3e-25 Score=212.26 Aligned_cols=335 Identities=15% Similarity=0.053 Sum_probs=207.1
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcC
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 180 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~ 180 (474)
+|||.+-.. --++|+|++|+.++.. +....++.+...+|.+++++++ +.+++++++||++|++.|++.+ ...
T Consensus 1 ~~~~~~~~~----t~p~p~v~~A~~~a~~-g~~~yg~~p~~~~le~~lA~~~-G~~~~~~~~sGt~A~~~al~a~--~~~ 72 (343)
T d1m6sa_ 1 MIDLRSDTV----TKPTEEMRKAMAQAEV-GDDVYGEDPTINELERLAAETF-GKEAALFVPSGTMGNQVSIMAH--TQR 72 (343)
T ss_dssp CEECSCGGG----CCCCHHHHHHHHTCCC-CCGGGTCCHHHHHHHHHHHHHT-TCSEEEEESCHHHHHHHHHHHH--CCT
T ss_pred CcccccccC----CCCCHHHHHHHHhhhc-CCcccCCCHHHHHHHHHHHHHH-CCCeEEEeCCHHHHHHHHHHHH--hcc
Confidence 367766432 2358999999976532 3222346777889999999998 6789999999999999999842 223
Q ss_pred CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC---CCCeEEEEEccccC
Q 011959 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVG 257 (474)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~ 257 (474)
++.++.....++..........+........+. .....|++.+++.+... ...+..++++..++
T Consensus 73 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 139 (343)
T d1m6sa_ 73 GDEVILEADSHIFWYEVGAMAVLSGVMPHPVPG-------------KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHN 139 (343)
T ss_dssp TCEEEEETTCHHHHSSTTHHHHHTCCEEEEECE-------------ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBT
T ss_pred CCceeccccccceeeecccccccccceeecccc-------------ccCccCHHHHHHhhhhhhcccccccccccccccc
Confidence 455555544443322222111111110000000 00112788888887642 23566677777666
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcC-CCcceEEEEecHHHHHhh
Q 011959 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMV 335 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i~~~~ 335 (474)
+.|....+.+.+++|+++|++||+++++||+++++ .....+.........+..+++|..+ +|.+.+++++..+.+...
T Consensus 140 ~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 219 (343)
T d1m6sa_ 140 RSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERA 219 (343)
T ss_dssp TTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHH
T ss_pred cCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHHHHhhh
Confidence 65555556677999999999999999999999877 4332222222223344556666666 456788888888876655
Q ss_pred cCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcC
Q 011959 336 APAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 415 (474)
Q Consensus 336 ~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~ 415 (474)
.... ...+ ++....+..++.................++..++.+.+.++...... .+....++++.+....
T Consensus 220 ~~~~-~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~--- 290 (343)
T d1m6sa_ 220 RKAR-KMLG--GGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNP---EDVKTNMVILRTDNLK--- 290 (343)
T ss_dssp HHHH-HHHT--CCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBCCG---GGCCSSEEEEECTTSS---
T ss_pred HhhC-cccc--cccchhHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhccCccC---CCCCceEEEEEeCCCc---
Confidence 4211 1122 22333333333333333333555666777777777777766322111 1123455555543221
Q ss_pred cccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 416 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
....+|.+.|+++||++.+.+.+.+|+ +..+|+||||+++++|+++++++
T Consensus 291 ---------~~a~~l~~~L~~~Gi~v~~~~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 291 ---------VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp ---------SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ---------ccHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 123578999999999999988888887 56789999999999999999874
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.93 E-value=5.1e-24 Score=212.97 Aligned_cols=306 Identities=13% Similarity=0.087 Sum_probs=189.2
Q ss_pred CCCHHHHHHHHHHHhhCC-----CCCeEEEeCCHHHHHHHHHHHhHhhc-CCcEEEEEeCCCCCCchhHHHhcCCCCccC
Q 011959 136 APCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~-----~~~~v~~~~sGseA~~~al~~ar~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (474)
+..++++++|+++.++++ ++++|++|+|+++++..+++ ++. .++.|++.+++|.+.........|..+..+
T Consensus 84 G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~---~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v 160 (428)
T d1iaya_ 84 GLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIF---CLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPI 160 (428)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHH---HHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEE
T ss_pred chHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHH---HhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEe
Confidence 456889999999988764 36799999999999999998 444 457788888888775433322233333222
Q ss_pred CCCCCCCCCCCCCCceEEccCCCHHHHHHHHh---cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011959 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFE---NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (474)
Q Consensus 210 ~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~---~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (474)
......++. -|.++++..++ ....+++++++.+++|++|.+.+.++ +++|.++|++||++||+|
T Consensus 161 ~~~~~~~~~------------~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~-~~~i~~~a~~~~~~vI~D 227 (428)
T d1iaya_ 161 HCESSNNFK------------ITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDT-LKSVLSFTNQHNIHLVCD 227 (428)
T ss_dssp CCCTTTTTC------------CCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHTTTCEEEEE
T ss_pred ecccccccc------------cccccccchhhhhhccCCCceEEEEccCCCcccccccccc-cchhheeeccCcEEEEec
Confidence 211111110 06777665443 23346777777766788898887666 999999999999999999
Q ss_pred ccccCc-ccCCCcc--ccccC------CCCc----eeehhhhcC-CCcceEEEEe-cHHHHHhhcCCCCcccccCCCCCh
Q 011959 287 EVMTGF-RLAYGGA--QEYFG------VTPD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNP 351 (474)
Q Consensus 287 Ev~~g~-r~g~~~~--~~~~g------~~pd----i~t~sK~l~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~ 351 (474)
|+|..+ ..+..+. .+..+ ..+| +.+|||.++ +|+|+||+++ ++++.+.+.. ... ....+.
T Consensus 228 e~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~---~~~--~~~~~~ 302 (428)
T d1iaya_ 228 EIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARK---MSS--FGLVST 302 (428)
T ss_dssp CTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHH---HHT--TSCCCH
T ss_pred ccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhh---hhc--cccccc
Confidence 999887 5443221 11111 1122 237999998 7999999987 5566666652 111 122334
Q ss_pred HHHHHHHHHHH---HhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHH
Q 011959 352 LAMTAGIHTLK---RLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 426 (474)
Q Consensus 352 ~~~aaa~aal~---~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 426 (474)
..+.++.+.+. .+++ .+..+.++++.+.+.+.|+ ..++....+..|.++|+.+..... ......
T Consensus 303 ~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~----~~gi~~~~p~gg~f~w~~l~~~~~-------~~~~~~ 371 (428)
T d1iaya_ 303 QTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLE----VVGIKCLKNNAGLFCWMDLRPLLR-------ESTFDS 371 (428)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCCBCCCSSSSEEEEECGGGCS-------SSSHHH
T ss_pred ccccchhhhhhhhccccccccccccccchhHHHHHHHHH----hCCCEEecCCcceEEEEECccccc-------cCCCCC
Confidence 44444333332 1111 2233334444444444444 345443344557778888753210 112223
Q ss_pred HHHHHHHHHH-CCeEecccC------CcceEEecC-CcHHHHHHHHHHHHHHHhh
Q 011959 427 FARFYRGMLE-EGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 427 ~~~~~~~l~~-~Gv~v~~~~------~~~~~~~~~-~t~e~i~~~l~~l~~~~~~ 473 (474)
..++++.|++ +||++.|+. .+++|++++ .++++|++++++|++++..
T Consensus 372 ~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~ 426 (428)
T d1iaya_ 372 EMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp HHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 3467777775 599998862 345789875 5778899999999999864
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.93 E-value=5.4e-24 Score=213.00 Aligned_cols=312 Identities=12% Similarity=0.091 Sum_probs=191.9
Q ss_pred CCCHHHHHHHHHHHhhCC-----CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCC
Q 011959 136 APCLLENVLAEMVISAVP-----SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG 210 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~-----~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~ 210 (474)
+..++++++|+++.++++ ++++|++|+|+++|+..+++. ....++.|++.+++|++.........|..+..+.
T Consensus 85 G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~--l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~ 162 (431)
T d1m7ya_ 85 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFC--LADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIH 162 (431)
T ss_dssp CCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHH--HCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEE
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHH--hcCCCCEEEEeCCCchhHHHHHHHhcCceecccc
Confidence 345788899999988763 367999999999999999984 2234678888899997754333222233222111
Q ss_pred CCCCCCCCCCCCCceEEccCCCHHHHHHHHhc---CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 011959 211 LPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287 (474)
Q Consensus 211 ~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DE 287 (474)
.....++ . -|.+.+++.+.+ ...++.++++..++|++|.+.+.++ +++|.++|++||++||+||
T Consensus 163 ~~~~~~~-----------~-l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~-l~~i~~~a~~~~~~vI~De 229 (431)
T d1m7ya_ 163 CTSSNGF-----------Q-ITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNE-LYLLLSFVEDKGIHLISDE 229 (431)
T ss_dssp CCGGGTS-----------C-CCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEEC
T ss_pred ccchhcc-----------c-ccHHHhhhhhhhhhhccCcceEEEecCccccccccccccc-cccccccccccCcceeecc
Confidence 1111111 0 167777776653 3346777777777788898887666 9999999999999999999
Q ss_pred cccCc-ccCCCcc-c-ccc---CC------CCce---eehhhhcC-CCcceEEEEecHHHHHhhcCCCCcccccCCCCCh
Q 011959 288 VMTGF-RLAYGGA-Q-EYF---GV------TPDL---TTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351 (474)
Q Consensus 288 v~~g~-r~g~~~~-~-~~~---g~------~pdi---~t~sK~l~-~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~ 351 (474)
+|..+ ..+..+. . +.. .. ...+ .+|||.++ +|+|+||++++++++..... . .......++
T Consensus 230 ~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~---~-~~~~~~~~~ 305 (431)
T d1m7ya_ 230 IYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT---K-MSSFGLVSS 305 (431)
T ss_dssp TTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHH---H-HGGGSCCCH
T ss_pred cccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHH---H-Hhccccccc
Confidence 99877 5443211 1 100 00 1112 27999999 79999999998876544331 1 111223344
Q ss_pred HHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHH
Q 011959 352 LAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARF 430 (474)
Q Consensus 352 ~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 430 (474)
..+.+..+.+..... +++.++.++..+..++.+.+.+.+.++....+..|.++|+++...-. ........++
T Consensus 306 ~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~-------~~~~~~~~~l 378 (431)
T d1m7ya_ 306 QTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLR-------SNTFEAEMEL 378 (431)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSS-------SSSHHHHHHH
T ss_pred cccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcCCcEEecCCceeEEEEECccccc-------cCcccCHHHH
Confidence 454444444432111 22333333322333333334344455544444457778888753210 0112233467
Q ss_pred HHHHH-HCCeEecccC------CcceEEecC-CcHHHHHHHHHHHHHHHhh
Q 011959 431 YRGML-EEGVYFAPSQ------FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 431 ~~~l~-~~Gv~v~~~~------~~~~~~~~~-~t~e~i~~~l~~l~~~~~~ 473 (474)
++.|+ ++||++.|+. .+++|++++ .+++++++++++|++++++
T Consensus 379 ~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~ 429 (431)
T d1m7ya_ 379 WKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGE 429 (431)
T ss_dssp HHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEEeccccCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHH
Confidence 77776 5699998862 345889876 4788999999999999876
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=4.6e-24 Score=206.21 Aligned_cols=310 Identities=12% Similarity=0.090 Sum_probs=200.6
Q ss_pred EEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHH
Q 011959 94 WDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP----CLLENVLAEMVISAVPSIEMVRFVNSGTEACM 169 (474)
Q Consensus 94 ~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~----~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~ 169 (474)
++..++++|++..|- |+++ .++.+++++.+.+......+++ .++++++++++....-..++|++|+|+++++.
T Consensus 14 ~~~~~~d~~~l~~~e--np~~-~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~ 90 (334)
T d2f8ja1 14 YETEKRDKTYLALNE--NPFP-FPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIY 90 (334)
T ss_dssp CCCCCCCSEECSSCC--CSSC-CCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHH
T ss_pred ccccCCCceEEECCC--CCCC-CCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHH
Confidence 345677888877664 6666 5789999999888653222223 34555555555433225788999999999998
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (474)
.+++. .++|++.+++|.++.. .....|..+..++....... + +...+++++
T Consensus 91 ~l~~~------~d~v~i~~P~y~~~~~-~~~~~g~~~v~v~~~~~~~~--------------~--------~~~~~~~~~ 141 (334)
T d2f8ja1 91 VMMLM------FDRSVFFPPTYSCYRI-FAKAVGAKFLEVPLTKDLRI--------------P--------EVNVGEGDV 141 (334)
T ss_dssp HHHHH------SSEEEECSSCCHHHHH-HHHHHTCCEEECCCCTTSCC--------------C--------CCCCCTTEE
T ss_pred HHhhh------cccccccccccccccc-chhccCCccccccccccccc--------------c--------ccccccceE
Confidence 88762 2789999999987543 33444543332221110000 0 011124556
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCc---eeehhhhcC-CCcceEE
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD---LTTLGKIIG-GGLPVGA 324 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pd---i~t~sK~l~-~G~~iG~ 324 (474)
+++..++|++|.+.+ .+.|.++ .++++++|+||+|.++ ........ ...+. +.+|||.++ +|+|+||
T Consensus 142 l~l~nP~NPtG~~~s----~~~l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~~---~~~~~~i~~~S~SK~~~~~G~R~G~ 213 (334)
T d2f8ja1 142 VFIPNPNNPTGHVFE----REEIERI-LKTGAFVALDEAYYEFHGESYVDFL---KKYENLAVIRTFSKAFSLAAQRVGY 213 (334)
T ss_dssp EEEESSCTTTCCCCC----HHHHHHH-HTTTCEEEEECTTGGGTCCCCGGGG---GTCSSEEEEEESTTTSSCTTTCEEE
T ss_pred EEecccccccceeec----HHHhhcc-ccceeEEeecccchhhccccccccc---ccCceEEEEecCccccchhhhhhhh
Confidence 666555778888887 4445554 4689999999999766 32221111 11222 237999999 8999999
Q ss_pred EEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeecee
Q 011959 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403 (474)
Q Consensus 325 ~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~ 403 (474)
+++++++++.+... ..+++.+..++.++.+.++..+. +...+.++++++++.+.|+++ ++. ..++.|.|
T Consensus 214 ~~~~~~~i~~l~~~-----~~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----g~~-~~~~~g~f 283 (334)
T d2f8ja1 214 VVASEKFIDAYNRV-----RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GYR-ITDSRGNF 283 (334)
T ss_dssp EEECHHHHHHHHHH-----SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----TCE-ECCCCSSE
T ss_pred cccchHHHHHHHHh-----hcccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHC----CCe-ECCCCceE
Confidence 99999999988631 13456788888888877764322 344555666666666666554 432 24567777
Q ss_pred EEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecCCcHHHHHHHHHHHHH
Q 011959 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
+++.+.. ....++.+.|+++||++++. .+++|+++. +.||+++++++|++
T Consensus 284 ~~~~~~~--------------~~~~~~~~~L~~~GI~vr~~-~~~vRis~g-~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 284 VFVFMEK--------------EEKERLLEHLRTKNVAVRSF-REGVRITIG-KREENDMILRELEV 333 (334)
T ss_dssp EEEECCH--------------HHHHHHHHHHHHTTEECEEE-TTEEEEECC-CHHHHHHHHHHHHH
T ss_pred EEEECCC--------------CCHHHHHHHHHHCCCEECCC-CCeEEEEcC-CHHHHHHHHHHHhc
Confidence 7766532 23467889999999998765 467899864 77888999998875
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.91 E-value=1.4e-23 Score=202.02 Aligned_cols=327 Identities=13% Similarity=0.009 Sum_probs=190.2
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhc
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 179 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~ 179 (474)
.+|||.|. |+.| .||+|++|+.++........+.++...++.++++++++....++|++|||+||+.+++.++.
T Consensus 3 ~~~~f~s~---n~~g-~~P~v~~A~~~a~~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~~-- 76 (345)
T d1v72a1 3 PALGFSSD---NIAG-ASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTP-- 76 (345)
T ss_dssp CCCBCSCG---GGCC-CCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCC--
T ss_pred CCcCcCCC---CCCC-CCHHHHHHHHHHhccCccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHHh--
Confidence 46888875 6555 69999999988654322223477888999999999995445789999999999999995322
Q ss_pred CCcEEEEEeCCCCCCc---hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC---CCeEEEEEc
Q 011959 180 GRERIIKFEGCYHGHA---DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---GEIAAIILE 253 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~~---~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~a~vi~e 253 (474)
..+.++. ....|... .......+..+.... +. .....+++.+++.+.... ..+..++++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 141 (345)
T d1v72a1 77 PWGNIYC-HPASHINNDECGAPEFFSNGAKLMTV-DG-------------PAAKLDIVRLRERTREKVGDVHTTQPACVS 141 (345)
T ss_dssp TTEEEEE-CTTSHHHHSSTTHHHHHTTSCEEEEC-CC-------------GGGCCCHHHHHHHTTSSTTCTTSCEEEEEE
T ss_pred cCCcccc-ccccceeeechhhHHHhcCccccccc-cc-------------ccccccHHHhhhhhcccccccccccceeee
Confidence 2333333 33322221 111122222111000 00 001237899998887532 235566666
Q ss_pred cccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCC--CCceeehhhhcCCCcceEEE-EecH
Q 011959 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV--TPDLTTLGKIIGGGLPVGAY-GGRR 329 (474)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~--~pdi~t~sK~l~~G~~iG~~-~~~~ 329 (474)
.++++.+....+.+.++++.++|++||+++++|++|+++ ............. ..+..+++|..+++...+.. ....
T Consensus 142 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (345)
T d1v72a1 142 ITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNT 221 (345)
T ss_dssp EESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSG
T ss_pred eeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccccccccchh
Confidence 666655555556666999999999999999999999876 4443333333333 34456777777655444444 3333
Q ss_pred HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE-eeeceeEEEEE
Q 011959 330 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFF 408 (474)
Q Consensus 330 ~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~g~~~~i~~ 408 (474)
........ .......+.++ ...++.+++..+. +............+.+.+.+.+.+.+..... +..++++++.+
T Consensus 222 ~~~~~~~~---~~~~~~~~~~~-~~~aa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~ 296 (345)
T d1v72a1 222 SLATEMSY---RRKRAGHLSSK-MRFLSAQIDAYLT-DDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRL 296 (345)
T ss_dssp GGHHHHHH---HHHHTTCCCSS-THHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEE
T ss_pred hhhhhccc---cccccccccch-hhHHhhhhHHHHH-HhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEc
Confidence 33322221 11111222222 2333333444333 3333444444445555555544555433222 23345555443
Q ss_pred ecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc--CCcceEE--ecCCcHHHHHHHHHHHHHH
Q 011959 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS--QFEAGFT--SLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--~~~~~~~--~~~~t~e~i~~~l~~l~~~ 470 (474)
. ..+.+.|+++|+.+.+. +...+|+ +..+|+||||+++++|+++
T Consensus 297 ~------------------~~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 297 D------------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp C------------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred C------------------HHHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2 35678899999887654 3345666 4778999999999999874
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.90 E-value=1.5e-23 Score=207.73 Aligned_cols=335 Identities=13% Similarity=0.065 Sum_probs=202.8
Q ss_pred EeccCChhhccCCC--CCHHHHHHHHHHHHhcCC--CC---CCCHHHHHHHHHHHhhCC---CCCeEEEeC--CHHHHHH
Q 011959 102 IDYVGSWGPAIIGH--ADDQVLAALGETMKKGTS--FG---APCLLENVLAEMVISAVP---SIEMVRFVN--SGTEACM 169 (474)
Q Consensus 102 iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~--~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~--sGseA~~ 169 (474)
||+..|...+.-|. ..+.|++|..+.+++... |+ +..++++++++++.+... ..+.++.+. +|+.+..
T Consensus 31 InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~ 110 (401)
T d7aata_ 31 MNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLR 110 (401)
T ss_dssp EECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHH
T ss_pred EEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHH
Confidence 56666644344554 358899998887776533 32 346788888888887764 345555543 3333444
Q ss_pred HHHHHhHhhc-CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 170 GVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 170 ~al~~ar~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
+...+.+.+. .++.|++.+|+|+++. ..+...|..+...++....+. ..|++.+++.+....++++
T Consensus 111 ~~~~~~~~l~~pGd~Vlv~~P~y~~y~-~~~~~~g~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 177 (401)
T d7aata_ 111 VGANFLQRFFKFSRDVYLPKPSWGNHT-PIFRDAGLQLQAYRYYDPKTC------------SLDFTGAMEDISKIPEKSI 177 (401)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCTTHH-HHHHHTTCEEEEEECEETTTT------------EECHHHHHHHHTTSCTTCE
T ss_pred HHHHhhHhhcCCCceEEEecCCCcchh-hHHHHcCCeEEEEeccccccc------------cccHHHHHHHHhcCCCceE
Confidence 4433334554 4678999999998854 444444543332221111110 1168888877765556778
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc----cccccCCCCc---eeehhhhcC-CC
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG----AQEYFGVTPD---LTTLGKIIG-GG 319 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~----~~~~~g~~pd---i~t~sK~l~-~G 319 (474)
++++++.+|++|.+.+.++ +++|.++|++|+++||.||+|.+| ..+... ........++ +.++||.++ .|
T Consensus 178 ~iii~~p~NPTG~~~s~e~-~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G 256 (401)
T d7aata_ 178 ILLHACAHNPTGVDPRQEQ-WKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYG 256 (401)
T ss_dssp EEEESSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGG
T ss_pred EEEecCCCCCccccCCHHH-HHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeec
Confidence 8888888899999887666 999999999999999999999988 543211 1111122222 237899999 79
Q ss_pred cceEEEEecHHHHHhhcCCCC----cccccCCCCChHHHHHHHHHHHHh------cC--CCHHHHHHHHHHHHHHHHHHH
Q 011959 320 LPVGAYGGRRDIMEMVAPAGP----MYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~----~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~l~~~L~~~ 387 (474)
||+||++++.++.+....... .......+.+.+.++++...++.- .+ +..+++++++++.+.+.|++.
T Consensus 257 ~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 336 (401)
T d7aata_ 257 ERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKE 336 (401)
T ss_dssp GCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988776654431000 011112344555555555544310 00 233444555555555566554
Q ss_pred hhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH-HHCCeEecccCCcceEEecC-CcHHHHHHHHH
Q 011959 388 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQFEAGFTSLA-HSSDDIQHTIT 465 (474)
Q Consensus 388 ~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~~~~~~-~t~e~i~~~l~ 465 (474)
+....+....+..|+|+|+.+. .++++.| .++||++.|+ .|++++ .++++|+.+.+
T Consensus 337 ~~~~~~~~~~~~~G~F~~~~ls------------------~e~~~~L~~e~gV~~~pg----~Ris~a~~~~~~i~~la~ 394 (401)
T d7aata_ 337 GSSHNWQHITDQIGMFCFTGLK------------------PEQVERLTKEFSIYMTKD----GRISVAGVASSNVGYLAH 394 (401)
T ss_dssp TCCSCCHHHHHCCSSEEECCCC------------------HHHHHHHHHHHCEECCTT----CEEEGGGCCTTTHHHHHH
T ss_pred CCCCCcceECCCCeEEEecCCC------------------HHHHHHHHHhCCEEECCC----cEEEeccCCHHHHHHHHH
Confidence 3221111122344555554321 2345555 4679999987 488865 68999999999
Q ss_pred HHHHHHh
Q 011959 466 AAEKVLR 472 (474)
Q Consensus 466 ~l~~~~~ 472 (474)
+|+++++
T Consensus 395 ai~~v~k 401 (401)
T d7aata_ 395 AIHQVTK 401 (401)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9999874
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.90 E-value=7.5e-23 Score=203.44 Aligned_cols=337 Identities=10% Similarity=-0.006 Sum_probs=197.7
Q ss_pred EeccCChhhccCCC--CCHHHHHHHHHHHHhc--CC-CC---CCCHHHHHHHHHHHhhCC---CCC--eEEEeCCHHHHH
Q 011959 102 IDYVGSWGPAIIGH--ADDQVLAALGETMKKG--TS-FG---APCLLENVLAEMVISAVP---SIE--MVRFVNSGTEAC 168 (474)
Q Consensus 102 iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~--~~-~~---~~~~~~~~la~~l~~~~~---~~~--~v~~~~sGseA~ 168 (474)
||+..|...+.-|. ..|.|.+|.+...... .+ |+ +..++++++++++.+... ..+ .+..+.+++.++
T Consensus 33 Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (412)
T d1ajsa_ 33 VNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGAL 112 (412)
T ss_dssp EECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred EEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHH
Confidence 45555533344443 2477888766544332 21 22 245677777777766543 133 355677888888
Q ss_pred HHHHHHhHh-----hcCCcEEEEEeCCCCCCchhHHHhcCCC-CccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhc
Q 011959 169 MGVLRLARA-----FTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (474)
Q Consensus 169 ~~al~~ar~-----~~~~~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (474)
..+...... ..+++.|++.+++|..+. ..+...|.. +.........+. ..|++.+++.+..
T Consensus 113 ~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~-~~~~~~G~~~v~~~~~~~~~~~------------~~d~~~~~~~~~~ 179 (412)
T d1ajsa_ 113 RIGAEFLARWYNGTNNKDTPVYVSSPTWENHN-GVFTTAGFKDIRSYRYWDTEKR------------GLDLQGFLSDLEN 179 (412)
T ss_dssp HHHHHHHHHHSSSSSCCCSCEEEEESCCTHHH-HHHHHTTCSCEEEEECEETTTT------------EECHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCCEEEEeCCcchhhH-HHHHHcCCeEEEeecccccccc------------cccHHHHHHHHHh
Confidence 877764322 245788999999997644 444444432 211111111110 0167887777765
Q ss_pred CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC---ccc-cccCCCCc---eeehhh
Q 011959 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG---GAQ-EYFGVTPD---LTTLGK 314 (474)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~---~~~-~~~g~~pd---i~t~sK 314 (474)
..+++.++++++.+|++|.+.+.++ +++|.++|++||++||+||+|.++ +.+.. ... ......+. +.++||
T Consensus 180 ~~~~~~~il~~~P~NPTG~v~s~e~-~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk 258 (412)
T d1ajsa_ 180 APEFSIFVLHACAHNPTGTDPTPEQ-WKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSK 258 (412)
T ss_dssp SCTTCEEEEESSSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTT
T ss_pred ccCCcEEEEecCCCCCcCCCCCHHH-HHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccc
Confidence 5567788888888899998887666 999999999999999999999988 54321 111 11111122 236899
Q ss_pred hcC-CCcceEEEEecHHHHHhhcCCC----CcccccCCCCChHHHHHHHHHHHHh------cC--CCHHHHHHHHHHHHH
Q 011959 315 IIG-GGLPVGAYGGRRDIMEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELT 381 (474)
Q Consensus 315 ~l~-~G~~iG~~~~~~~i~~~~~~~~----~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~l~ 381 (474)
.++ .|+|+||++++.+..+.+.... ........+.+.+++.++...+... .+ +.++++++++++.+.
T Consensus 259 ~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~ 338 (412)
T d1ajsa_ 259 NFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELR 338 (412)
T ss_dssp TSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 6999999988755443332100 0111222344566666665554311 11 233444555555555
Q ss_pred HHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH-HHCCeEecccCCcceEEecC-CcHHH
Q 011959 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQFEAGFTSLA-HSSDD 459 (474)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~~~~~~-~t~e~ 459 (474)
+.|++......+.......|+|.++.+. .++++.| .++||++.|++ |++++ .++++
T Consensus 339 ~~L~~~~~~~~~~~i~~~~G~F~~~~ls------------------~~~v~~L~~e~gV~~vpg~----Ri~~ag~~~~~ 396 (412)
T d1ajsa_ 339 ARLEALKTPGTWNHITDQIGMFSFTGLN------------------PKQVEYLINQKHIYLLPSG----RINMCGLTTKN 396 (412)
T ss_dssp HHHHHTTCSSCCHHHHHCCSSEEECCCC------------------HHHHHHHHHTTCEECCTTS----EEEGGGCCTTT
T ss_pred HHHHHhCCCCCeeeecCCCeEEEecCCC------------------HHHHHHHHHhCCEEEeCCC----eEEeccCCHHH
Confidence 6665543211111112234444332221 1233444 57799998875 88864 68999
Q ss_pred HHHHHHHHHHHHhhC
Q 011959 460 IQHTITAAEKVLRQI 474 (474)
Q Consensus 460 i~~~l~~l~~~~~~~ 474 (474)
|+.++++|+++++++
T Consensus 397 i~~~a~aI~~av~~~ 411 (412)
T d1ajsa_ 397 LDYVATSIHEAVTKI 411 (412)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999875
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=9.3e-23 Score=198.63 Aligned_cols=281 Identities=13% Similarity=0.120 Sum_probs=182.1
Q ss_pred CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCC-c-EEEEEeCCCCCCchhHHHhcCCCCccCCCC
Q 011959 136 APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGR-E-RIIKFEGCYHGHADPFLVKAGSGVATLGLP 212 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~-~-~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~ 212 (474)
||+....+|.++++++++ ++++|++++|+++++..+++ ++.++ + .|++.+++|.. +.......|..+...+.
T Consensus 53 YPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~---~~~~pgd~~Vl~~~P~y~~-~~~~~~~~g~~v~~~~~- 127 (354)
T d1fg7a_ 53 YPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIR---AFCEPGKDAILYCPPTYGM-YSVSAETIGVECRTVPT- 127 (354)
T ss_dssp CCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH---HHCCTTTCEEEECSSSCTH-HHHHHHHHTCEEEECCC-
T ss_pred CCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHH---Hhhcccccccccccccccc-chhhhhccCceeecccc-
Confidence 354444677888888776 67899999999999999999 55543 4 45555667655 44444455554433222
Q ss_pred CCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011959 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (474)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (474)
..++. -|+++++..+. ++++|++.+++|++|.+.+..+ ++.+.+.++ ++.++|+||.|..|
T Consensus 128 -~~~~~------------~d~~~l~~~~~----~~~~v~~~~pnNPtG~~~~~~~-~~~~~~~~~-~~~~~iidd~~~~f 188 (354)
T d1fg7a_ 128 -LDNWQ------------LDLQGISDKLD----GVKVVYVCSPNNPTGQLINPQD-FRTLLELTR-GKAIVVADEAYIEF 188 (354)
T ss_dssp -CTTSC------------CCHHHHHTSCT----TEEEEEEESSCTTTCCCCCHHH-HHHHHHHHT-TTCEEEEECTTGGG
T ss_pred -ccccc------------cchhhhhhccc----ccceeeccCCCccceeEeeecc-ccccccccc-ccccccccccchhh
Confidence 11210 07777766543 6788888888888898886554 777777665 67788888888777
Q ss_pred -ccCCCccccccCCCCcee---ehhhhcC-CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-
Q 011959 293 -RLAYGGAQEYFGVTPDLT---TLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE- 366 (474)
Q Consensus 293 -r~g~~~~~~~~g~~pdi~---t~sK~l~-~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~- 366 (474)
..... .......++++ ||||.++ +|+|+||+++++++++.+.+ ....+..+.+++.++.+++..-..
T Consensus 189 ~~~~~~--~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~-----~~~~~~~~~~~~~~a~~~~~~~~~~ 261 (354)
T d1fg7a_ 189 CPQASL--AGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMK-----VIAPYPLSTPVADIAAQALSPQGIV 261 (354)
T ss_dssp SGGGCS--GGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHH-----HSCSSCSCHHHHHHHHHHTSHHHHH
T ss_pred cccccc--chhhcccccceEEeCCccccCCCccccccccccchhhhhhhh-----hcCccchhhHHHHHHHHHHhhhccc
Confidence 33221 11223334433 8999999 89999999999999998863 123455666666665555422111
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHhhhcCCee-EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecc
Q 011959 367 --PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 443 (474)
Q Consensus 367 --~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~ 443 (474)
....+++.+.++++.+.|.+ .+... ..++.|+|+++.+.+ ...+.+.|+++||++++
T Consensus 262 ~~~~~~~~~~~~r~~l~~~l~~----~~~~~~~~p~~~~f~~~~~~~----------------~~~~~~~L~~~gIlvr~ 321 (354)
T d1fg7a_ 262 AMRERVAQIIAEREYLIAALKE----IPCVEQVFDSETNYILARFKA----------------SSAVFKSLWDQGIILRD 321 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----STTEEEECCCSSSEEEEEETT----------------HHHHHHHHHHTTEECEE
T ss_pred cccccchhhhhHHHHHHHHHHh----CCCcceeCCCCceEEEEeCCC----------------HHHHHHHHHHCCcEEec
Confidence 22233344445555555544 34333 335567788877632 25688899999999987
Q ss_pred cC-----CcceEEecCCcHHHHHHHHHHHH
Q 011959 444 SQ-----FEAGFTSLAHSSDDIQHTITAAE 468 (474)
Q Consensus 444 ~~-----~~~~~~~~~~t~e~i~~~l~~l~ 468 (474)
+. .+++|+++ .|++++++++++|+
T Consensus 322 ~~~~~~~~~~lRisi-gt~ee~~~~l~aLk 350 (354)
T d1fg7a_ 322 QNKQPSLSGCLRITV-GTREESQRVIDALR 350 (354)
T ss_dssp CTTSTTCTTEEEEEC-CCHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEe-CCHHHHHHHHHHHh
Confidence 53 24578876 48889999998886
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=5.8e-23 Score=203.22 Aligned_cols=341 Identities=16% Similarity=0.073 Sum_probs=201.8
Q ss_pred EEcCCCEEEeccCChhhccCCCC--CHHHHHHHHHHHHhcCCCC-----CCCHHHHHHHHHHHhhCC---CCC--eEEEe
Q 011959 94 WDIDGNEYIDYVGSWGPAIIGHA--DDQVLAALGETMKKGTSFG-----APCLLENVLAEMVISAVP---SIE--MVRFV 161 (474)
Q Consensus 94 ~d~dG~~~iD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~~~-----~~~~~~~~la~~l~~~~~---~~~--~v~~~ 161 (474)
.|.+.++ ||+..|...++-|.. .|.|++|..+.+++...++ +..++++++++++.++.+ ..+ ....+
T Consensus 22 ~d~~~~k-InL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~ 100 (396)
T d2q7wa1 22 ADERPGK-INLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQT 100 (396)
T ss_dssp ------C-EESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred ccCCCCc-EEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeecc
Confidence 4444443 799888655666653 5889999888877643322 245778888888877664 122 34456
Q ss_pred CCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHh
Q 011959 162 NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 241 (474)
Q Consensus 162 ~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~ 241 (474)
.+|+.+...++.+......++.|++.+++|..+...+ ...|..+...+.....+. ..+...+++...
T Consensus 101 ~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~-~~~g~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 167 (396)
T d2q7wa1 101 PGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVF-NSAGLEVREYAYYDAENH------------TLDFDALINSLN 167 (396)
T ss_dssp SHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHH-HHTTCEEEEEECEETTTT------------EECHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhhcccceEEEEecCCCccchHHH-HHcCCeeEeccccccccc------------ccccchHHHHHH
Confidence 7777676666654334566788999999998755444 344432221111000000 015666666666
Q ss_pred cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc--ccc-ccCCCCc---eeehhh
Q 011959 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG--AQE-YFGVTPD---LTTLGK 314 (474)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~--~~~-~~g~~pd---i~t~sK 314 (474)
...+++.++++.+.+|++|.+.+.++ +++|.++|++|++++|+||+|.+| ..+... ... ..+..++ +.++||
T Consensus 168 ~~~~~~~~i~~~~P~NPTG~~~s~e~-~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk 246 (396)
T d2q7wa1 168 EAQAGDVVLFHGCCHNPTGIDPTLEQ-WQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSK 246 (396)
T ss_dssp TCCTTCEEEEECSSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTT
T ss_pred HhccCcEEEEecCCcCCcCeecCHHH-HHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccc
Confidence 55566778888888888998887555 999999999999999999999988 443211 111 1111222 336899
Q ss_pred hcC-CCcceEEEEecHHHHHhhcCCCC---cccccCCC-CChHHHHHHHHHHHH------hcC--CCHHHHHHHHHHHHH
Q 011959 315 IIG-GGLPVGAYGGRRDIMEMVAPAGP---MYQAGTLS-GNPLAMTAGIHTLKR------LKE--PGTYEYLNKITGELT 381 (474)
Q Consensus 315 ~l~-~G~~iG~~~~~~~i~~~~~~~~~---~~~~~t~~-~~~~~~aaa~aal~~------~~~--~~~~~~~~~~~~~l~ 381 (474)
.++ .|+|+||++++.+.++.+..... ....++++ .+..++.++.+.+.. .++ +.+.++++++++.+.
T Consensus 247 ~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~ 326 (396)
T d2q7wa1 247 NFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326 (396)
T ss_dssp TTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_pred cccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 79999999888766554431100 01122333 344444444433321 111 234445555666666
Q ss_pred HHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccCCcceEEecC-CcHHH
Q 011959 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSLA-HSSDD 459 (474)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~~~~~-~t~e~ 459 (474)
+.|++......+.......|.|.++.+. .++++.|+ ++||++.+++ |++++ .++++
T Consensus 327 ~~L~~~~~~~~~~~~~~~~G~F~~~~l~------------------~e~~~~L~~e~gV~~~~g~----Ri~~a~l~~~~ 384 (396)
T d2q7wa1 327 NTLQEKGANRDFSFIIKQNGMFSFSGLT------------------KEQVLRLREEFGVYAVASG----RVNVAGMTPDN 384 (396)
T ss_dssp HHHHHTTCCSCCTHHHHCCSSEEECCCC------------------HHHHHHHHHHHCEECCTTC----EEEGGGCCTTT
T ss_pred HHHHHhCCCCCcceecCCCeEEEeeCCC------------------HHHHHHHHHhCCEEECCCC----EEEecCCCHHH
Confidence 6666553221111112345655554331 23455555 6799998875 77764 58899
Q ss_pred HHHHHHHHHHHH
Q 011959 460 IQHTITAAEKVL 471 (474)
Q Consensus 460 i~~~l~~l~~~~ 471 (474)
|+.++++|.+++
T Consensus 385 i~~~~~ai~~v~ 396 (396)
T d2q7wa1 385 MAPLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999998864
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.89 E-value=1.6e-22 Score=204.28 Aligned_cols=352 Identities=15% Similarity=0.046 Sum_probs=203.1
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHh
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA 177 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~ 177 (474)
|+.+|||.+.+++..++ +.. ...+..+......++...+|++++++++ +.+.++|++||++|++.|+++++.
T Consensus 41 ~~~~id~~sd~~t~~~~---~~~----~a~~~~gd~~y~~~~~~~~le~~~a~l~-g~~~~~~~~sGt~A~~~a~~~~~~ 112 (465)
T d1ax4a_ 41 SAVYIDLLTDSGTNAMS---DHQ----WAAMITGDEAYAGSRNYYDLKDKAKELF-NYDYIIPAHQGRGAENILFPVLLK 112 (465)
T ss_dssp GGCSEECSCSSSCCCEE---HHH----HHHHHTCCCCSSSCHHHHHHHHHHHHHH-CCCEEEEESSHHHHHHHHHHHHHH
T ss_pred cCeeeecccccchhhhh---HHH----HHHHhhhhhhhccChHHHHHHHHHHHHH-CCCEEEECCCcHHHHHHHHHHHHH
Confidence 67789999886654433 222 2233344333345666678888888888 789999999999999999998865
Q ss_pred hc-----CCcEEEEEeCCCCCCchhHHH-hcCCCCccCCCCCCCCCCCCCCCceEEccC-CCHHHHHHHHhcC-CCCeEE
Q 011959 178 FT-----GRERIIKFEGCYHGHADPFLV-KAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENN-KGEIAA 249 (474)
Q Consensus 178 ~~-----~~~~ii~~~~~yhg~~~~~~~-~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~~le~~l~~~-~~~~a~ 249 (474)
.. .+..++. +.+|+.+..... ..|........+...... ....... .|+++|+++|+++ ++.+++
T Consensus 113 ~g~~~~~~~~~~i~--~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 185 (465)
T d1ax4a_ 113 YKQKEGKAKNPVFI--SNFHFDTTAAHVELNGCKAINIVTEKAFDSE-----TYDDWKGDFDIKKLKENIAQHGADNIVA 185 (465)
T ss_dssp HHHHTTCCSSCEEE--ESSCCHHHHHHHHHTTCEEEECBCGGGGCTT-----SCCTTTTCBCHHHHHHHHHHHCGGGEEE
T ss_pred HHHhcCCCCCeEEe--ccchhhhhHHHHHHcCCeeecccccccCCCC-----CCCCccCccCHHHHHHHHHhhccccccc
Confidence 42 2233333 466765555443 333322111000000000 0000011 1899999999864 346788
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC------c-ccCCCccccccCCC------Cceeehhhhc
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG------F-RLAYGGAQEYFGVT------PDLTTLGKII 316 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g------~-r~g~~~~~~~~g~~------pdi~t~sK~l 316 (474)
++++++++.+|..+++.+++++|+++|++||++||+||+|+. . +.+.++..+..++. .|++++||..
T Consensus 186 ~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k 265 (465)
T d1ax4a_ 186 IVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKK 265 (465)
T ss_dssp EEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTS
T ss_pred eeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeeccc
Confidence 999999999888889999999999999999999999999952 2 33333333333332 4677888877
Q ss_pred CC-CcceEEEEecHH--HHHhhcCC-CCcccccCCCCChHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 317 GG-GLPVGAYGGRRD--IMEMVAPA-GPMYQAGTLSGNPLAM-TAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 317 ~~-G~~iG~~~~~~~--i~~~~~~~-~~~~~~~t~~~~~~~~-aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
++ |+..|+++.+++ +.+..... .......++++....+ +++...++....+++.++..++.++|.+.|++...
T Consensus 266 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g~-- 343 (465)
T d1ax4a_ 266 DPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGI-- 343 (465)
T ss_dssp TTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhcC--
Confidence 74 456777777643 22222100 0112233444433333 33333344333456677777888899998887632
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----------------CcceEEe--
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------FEAGFTS-- 452 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------~~~~~~~-- 452 (474)
+++......+.+ +.... -.... ............+.+.+.||.....+ ...++++
T Consensus 344 ~~v~~~~~~~~~--~~~~~-~~~~~---~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP 417 (465)
T d1ax4a_ 344 PIQYPTGGHAVF--VDCKK-LVPQI---PGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIA 417 (465)
T ss_dssp CBCSSCCSSEEE--EESTT-TCTTS---CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECC
T ss_pred ccccCCCcceee--eehhh-hcCCC---ccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCC
Confidence 222222222222 22110 00000 00111122334555667788654321 1134553
Q ss_pred -cCCcHHHHHHHHHHHHHHHh
Q 011959 453 -LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 453 -~~~t~e~i~~~l~~l~~~~~ 472 (474)
..+|+||+|.++++|+++++
T Consensus 418 ~~~~T~eeiD~vv~~l~~v~~ 438 (465)
T d1ax4a_ 418 RRVYTNDHMDYIADALIGLKE 438 (465)
T ss_dssp TTSSCHHHHHHHHHHHHTTHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 56799999999999998875
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.89 E-value=7.8e-22 Score=195.89 Aligned_cols=335 Identities=14% Similarity=0.071 Sum_probs=199.6
Q ss_pred EeccCChhhccCCCC--CHHHHHHHHHHHHh-cCC--CC---CCCHHHHHHHHHHHhhCC---CCCeEE--EeCCHHHHH
Q 011959 102 IDYVGSWGPAIIGHA--DDQVLAALGETMKK-GTS--FG---APCLLENVLAEMVISAVP---SIEMVR--FVNSGTEAC 168 (474)
Q Consensus 102 iD~~~~~~~~~lG~~--~p~v~~a~~~~~~~-~~~--~~---~~~~~~~~la~~l~~~~~---~~~~v~--~~~sGseA~ 168 (474)
||+..|...+..|.. .|.|.+|.+..... ... |+ +..++++++++++.+... ..+.+. .+.+|..+.
T Consensus 32 InL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (412)
T d1yaaa_ 32 VDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGAL 111 (412)
T ss_dssp EECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred EEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHH
Confidence 677766544566653 37788775444332 222 22 245777788887776654 123332 234455555
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
..++.+.....+++.|++.+++|..+...+ ...|..+...++....+. ..+.+.+++.+...++.+.
T Consensus 112 ~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~-~~~g~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 178 (412)
T d1yaaa_ 112 HISAKFFSKFFPDKLVYLSKPTWANHMAIF-ENQGLKTATYPYWANETK------------SLDLNGFLNAIQKAPEGSI 178 (412)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCTTHHHHH-HTTTCCEEEEECEETTTT------------EECHHHHHHHHHHSCTTCE
T ss_pred HHHHHHHhccCCCCEEecccccCchhHHHH-HHcCCceecccccccccc------------cccchhhhcccccCCCceE
Confidence 555543334456789999999987754443 333332222111000000 0167778777776666778
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-c------ccccCCCCcee---ehhhhcC
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-A------QEYFGVTPDLT---TLGKIIG 317 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~------~~~~g~~pdi~---t~sK~l~ 317 (474)
++++++.+|++|.+.+.++ +++|.++|++|++++|+||+|.+| ..+... . ....+..+.++ ++||.++
T Consensus 179 ~i~i~~P~NPTG~~~s~~~-~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~ 257 (412)
T d1yaaa_ 179 FVLHSCAHNPTGLDPTSEQ-WVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAG 257 (412)
T ss_dssp EEEECSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSC
T ss_pred EEEecCCCCCccccCCHHH-HHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccc
Confidence 8888888899998887666 999999999999999999999988 543211 0 11123333333 7999999
Q ss_pred -CCcceEEEEecHHHHHhhcCC--------CCcccccCCCCChHHHHHHHHHHHHh------cC--CCHHHHHHHHHHHH
Q 011959 318 -GGLPVGAYGGRRDIMEMVAPA--------GPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGEL 380 (474)
Q Consensus 318 -~G~~iG~~~~~~~i~~~~~~~--------~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~l 380 (474)
.|||+||++++.++++.+... .........+.+.+++.++...++.- .+ +.+.+.++++++.+
T Consensus 258 ~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l 337 (412)
T d1yaaa_ 258 MYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHAL 337 (412)
T ss_dssp CGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999998875543221100 00112334456677777777665421 11 33445556666666
Q ss_pred HHHHHHHhhhcCCeeEEee-eceeEEEEEecCCCcCcccccccchHHHHHHHHHH-HHCCeEecccCCcceEEecC-CcH
Q 011959 381 TQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQFEAGFTSLA-HSS 457 (474)
Q Consensus 381 ~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~~~~~~-~t~ 457 (474)
.+.|++.+....+. .+.. .|+|.++.+. .++++.| .++||++.+++ |++++ .++
T Consensus 338 ~~~L~~~g~~~~~~-~~~~~gG~F~~~~ls------------------~e~~~~L~~e~~V~~~~g~----Ris~~g~~~ 394 (412)
T d1yaaa_ 338 RDHLVKLGTPGNWD-HIVNQCGMFSFTGLT------------------PQMVKRLEETHAVYLVASG----RASIAGLNQ 394 (412)
T ss_dssp HHHHHHHTCSSCCT-HHHHCCSSEEECCCC------------------HHHHHHHHHHHCEECCTTS----EEEGGGCCT
T ss_pred HHHHHHhCCCCCCc-eeCCCceEEEecCcC------------------HHHHHHHHHhCCEEECCCC----EEEeccCCH
Confidence 66666553221111 1333 3444332221 2345555 46799998864 78764 788
Q ss_pred HHHHHHHHHHHHHHhh
Q 011959 458 DDIQHTITAAEKVLRQ 473 (474)
Q Consensus 458 e~i~~~l~~l~~~~~~ 473 (474)
+.|+.+.++|+++++.
T Consensus 395 ~~i~~l~~ai~~v~k~ 410 (412)
T d1yaaa_ 395 GNVEYVAKAIDEVVRF 410 (412)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998874
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=4.6e-22 Score=196.72 Aligned_cols=334 Identities=12% Similarity=0.018 Sum_probs=195.0
Q ss_pred EeccCChhhccCCCC--CHHHHHHHHHHHHh--cC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHH
Q 011959 102 IDYVGSWGPAIIGHA--DDQVLAALGETMKK--GT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 170 (474)
Q Consensus 102 iD~~~~~~~~~lG~~--~p~v~~a~~~~~~~--~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~ 170 (474)
||+..|...++.|.. .|.|.+|....... .. .|+ +..++++++++++.+..+ ..++++.+.+++.+...
T Consensus 29 InL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (397)
T d3tata_ 29 VNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGAL 108 (397)
T ss_dssp EECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHH
T ss_pred EEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHH
Confidence 788887655667753 47777776543322 11 122 245677777777776654 36778877766665554
Q ss_pred HHHHhH--hhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 171 VLRLAR--AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 171 al~~ar--~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
++.+.. ...+++.|++.+++|.++...+ ...|..+...++....+. ..|.+++.+.+...+++..
T Consensus 109 ~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~-~~~G~~~~~v~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 175 (397)
T d3tata_ 109 KVGADFLKRYFPESGVWVSDPTWENHVAIF-AGAGFEVSTYPWYDEATN------------GVRFNDLLATLKTLPARSI 175 (397)
T ss_dssp HHHHHHHHHHCSSCCCEECSSCCTTHHHHH-HTTTCCCEECCCCCTTTS------------SCCHHHHHHHHTTCCSSCC
T ss_pred HHHHHHhhhcCCCCcceecccCccccHHHH-HHcCCEEEEEecchhhcc------------ccchHHHHHHhhhcccccE
Confidence 443321 2345678888899998754444 444444433222111111 1167777777766556677
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC--ccc-cccCCCCce---eehhhhcC-CCc
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG--GAQ-EYFGVTPDL---TTLGKIIG-GGL 320 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~--~~~-~~~g~~pdi---~t~sK~l~-~G~ 320 (474)
++++.+.+|++|.+.+.++ +++|.++|++|+++||+||+|.+| ..+.. ... ...+...++ .++||.++ .||
T Consensus 176 ~~~~~~p~NPTG~~~s~~~-~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~ 254 (397)
T d3tata_ 176 VLLHPCCHNPTGADLTNDQ-WDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGE 254 (397)
T ss_dssp CEECSSSCSSSCCCCCHHH-HHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTT
T ss_pred EEEecCCCCCCCeeCCHHH-HHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCc
Confidence 7888888888998887666 999999999999999999999988 43321 111 111222233 37999999 799
Q ss_pred ceEEEEecHHHHHhhcCCC----CcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHH---HHHHHHHHhhhcC
Q 011959 321 PVGAYGGRRDIMEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGE---LTQGIIDAGKKAG 392 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~----~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~---l~~~L~~~~~~~~ 392 (474)
|+||++++...++...... ........+.+...++++...+..... ..+.++++...++ .++.|.+.+....
T Consensus 255 RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 334 (397)
T d3tata_ 255 RVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEM 334 (397)
T ss_dssp CCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred cccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999987755433322100 011222334455566555554432110 1222222222222 2233333222222
Q ss_pred ----CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccCCcceEEec-CCcHHHHHHHHHH
Q 011959 393 ----HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSL-AHSSDDIQHTITA 466 (474)
Q Consensus 393 ----~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~~~~-~~t~e~i~~~l~~ 466 (474)
+....+..|+|+|+.+. .++++.|+ ++||++.|++ |+++ .+++++|+++.++
T Consensus 335 ~~~~~~~~~~~~G~F~~~~ls------------------~e~~~~L~~e~~V~l~~g~----Ri~~a~~~~~~i~~~~~a 392 (397)
T d3tata_ 335 PERNFDYLLNQRGMFSYTGLS------------------AAQVDRLREEFGVYLIASG----RMCVAGLNTANVQRVAKA 392 (397)
T ss_dssp TTSCTTHHHHCCSSBCCCCCC------------------HHHHHHHTTTTCEECCSSS----CCBTTSCCTTTHHHHHHH
T ss_pred CCCceEEEcCCCceEEecCcC------------------HHHHHHHHHhCCEEeCCCC----EEEeccCCHHHHHHHHHH
Confidence 12223445666554431 23456665 5699998874 6764 5689999999999
Q ss_pred HHHHH
Q 011959 467 AEKVL 471 (474)
Q Consensus 467 l~~~~ 471 (474)
|++++
T Consensus 393 i~~v~ 397 (397)
T d3tata_ 393 FAAVM 397 (397)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 98763
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=2.5e-21 Score=191.21 Aligned_cols=333 Identities=14% Similarity=0.049 Sum_probs=197.9
Q ss_pred EeccCChhhccCCC--CCHHHHHHHHHHHHhcCC--CC---CCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHH
Q 011959 102 IDYVGSWGPAIIGH--ADDQVLAALGETMKKGTS--FG---APCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVL 172 (474)
Q Consensus 102 iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~--~~---~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al 172 (474)
||+..|..-+..|. ..|.|.+|+++.+++... |+ +..++++++++++.+... .....+.+.+|+.+...++
T Consensus 29 InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (394)
T d2ay1a_ 29 IDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQAL 108 (394)
T ss_dssp EECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHH
T ss_pred EEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHH
Confidence 56555533344454 358999999888876432 32 245678888888776553 2345667777777776666
Q ss_pred HHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE
Q 011959 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
.+.....+++.|++.+++|..+ .......|..+...+....... ..+.+++++......+++.++++
T Consensus 109 ~~~~~~~~gd~V~~p~p~~~~y-~~~~~~~g~~~v~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~i~~~ 175 (394)
T d2ay1a_ 109 ELARMANPDLRVFVSDPTWPNH-VSIMNFMGLPVQTYRYFDAETR------------GVDFEGMKADLAAAKKGDMVLLH 175 (394)
T ss_dssp HHHHHHCTTCCEEEEESCCHHH-HHHHHHHTCCEEEEECEETTTT------------EECHHHHHHHHHTCCTTCEEEEE
T ss_pred HHhhhcCCceEEEEecccccch-HHHHHHcCCEEEEecccchhcc------------cccchhHHHHHhhcccCcEEEEe
Confidence 6544556678888888888654 3344444443221111000000 01567777777665556777888
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc--cccc---cCCC-CceeehhhhcC-CCcceEE
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG--AQEY---FGVT-PDLTTLGKIIG-GGLPVGA 324 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~--~~~~---~g~~-pdi~t~sK~l~-~G~~iG~ 324 (474)
.+.+|++|.+.+.++ +++|.++|++|++++|+||+|.+| ..+... .... .+.. ..+.++||.++ .|||+||
T Consensus 176 ~~p~NPTG~~~s~e~-~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~ 254 (394)
T d2ay1a_ 176 GCCHNPTGANLTLDQ-WAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGC 254 (394)
T ss_dssp SSSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEE
T ss_pred CCCCCCCCCCCCHHH-HHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccccc
Confidence 888888998887666 999999999999999999999988 443211 1110 1111 11337899998 6999999
Q ss_pred EEecHHHHHhhcCCCC---cccccCC-CCChHHHHHHHHHHHH------hcC--CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 325 YGGRRDIMEMVAPAGP---MYQAGTL-SGNPLAMTAGIHTLKR------LKE--PGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 325 ~~~~~~i~~~~~~~~~---~~~~~t~-~~~~~~~aaa~aal~~------~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
++++....+....... .....++ +.+...++.+...+.. ..+ +.+.+++.++++.+.+.|+++.....
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 334 (394)
T d2ay1a_ 255 LLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDR 334 (394)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred hhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9887665544321000 0111222 2233333333333321 111 23455556666666666666542211
Q ss_pred CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccCCcceEEec-CCcHHHHHHHHHHHHHH
Q 011959 393 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSL-AHSSDDIQHTITAAEKV 470 (474)
Q Consensus 393 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~~~~-~~t~e~i~~~l~~l~~~ 470 (474)
+....+..|+|.++.+. .+++++|+ ++||++.|++ |+++ .+++++|+.+.++|.++
T Consensus 335 ~~~~~~~~G~F~~~~ls------------------~~~~~~L~~~~~V~~~~g~----Ri~~a~l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 335 FGFVAEHRGMFSRLGAT------------------PEQVKRIKEEFGIYMVGDS----RINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp TTHHHHCCSSEEECCCC------------------HHHHHHHHHHHCEECCTTC----EEEGGGCCTTTHHHHHHHHHHH
T ss_pred eeeECCCceeEEecCcC------------------HHHHHHHHHhCCEEecCCC----EEEecCCCHHHHHHHHHHHHHh
Confidence 22223345656554331 23455665 6799999864 7775 47999999999998875
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.86 E-value=1.4e-19 Score=176.34 Aligned_cols=326 Identities=14% Similarity=0.181 Sum_probs=184.5
Q ss_pred CCCCHHHHHHHHHHHHhcC--CC---C-----CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCC-c
Q 011959 114 GHADDQVLAALGETMKKGT--SF---G-----APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGR-E 182 (474)
Q Consensus 114 G~~~p~v~~a~~~~~~~~~--~~---~-----~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~-~ 182 (474)
|.-+|++++|+.+..+... .+ + ....+...+.+.+++++ +.|.+++|+||++|+..+++ ++.++ +
T Consensus 12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~-g~e~~~~t~g~t~a~~~~~~---al~~~gd 87 (364)
T d2e7ja1 12 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL-GCDVARVTNGAREAKFAVMH---SLAKKDA 87 (364)
T ss_dssp CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT-TSSEEEEESSHHHHHHHHHH---HHCCTTC
T ss_pred CcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHh-CcCEEEEECcHHHHHHHHHH---HHhCCCc
Confidence 4457888888876432100 00 0 01235667788888888 67899999999999999998 45454 5
Q ss_pred EEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC--CCCeEEEEEccccCCCC
Q 011959 183 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGEIAAIILEPVVGNSG 260 (474)
Q Consensus 183 ~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~a~vi~ep~~~~~G 260 (474)
.||+.+++|+. ....+...|..+..++....... .-|++++++.+++. ...+++|+++.+++++|
T Consensus 88 ~Vi~~~~~h~s-~~~~~~~~g~~v~~v~~~~~~~~------------~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG 154 (364)
T d2e7ja1 88 WVVMDENCHYS-SYVAAERAGLNIALVPKTDYPDY------------AITPENFAQTIEETKKRGEVVLALITYPDGNYG 154 (364)
T ss_dssp EEEEETTCCHH-HHHHHHHTTCEEEEECCCCTTTC------------CCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTC
T ss_pred EEEeecccccc-cchHHHhccceEEEeeecccccc------------ccCHHHHHhhhhhhcccCCceEEEeecCCCCCc
Confidence 56655555544 33344445554333222111110 01799999999753 23577888888889999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCC
Q 011959 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA 338 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~ 338 (474)
.+.| +++|.++|++||+++|+||+|+.-.. ......+| .|++ +++|.++++.++|++++++++++.+...
T Consensus 155 ~~~~----l~~I~~ia~~~~i~livD~a~~~g~~--~~~~~~~g--~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~ 226 (364)
T d2e7ja1 155 NLPD----VKKIAKVCSEYDVPLLVNGAYAIGRM--PVSLKEIG--ADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRR 226 (364)
T ss_dssp CCCC----HHHHHHHHHTTTCCEEEECTTTBTTB--CCCHHHHT--CSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCB
T ss_pred eeec----chhheeccccccchhhccccchhhhh--hhcccccc--cceeeeccccccCCCCCEEEEEECHHHHHHHHhh
Confidence 9998 99999999999999999999951111 11122233 4665 5679999655799999999887766432
Q ss_pred CCccc-----ccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE-Eeeec-eeEEEEEec
Q 011959 339 GPMYQ-----AGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYIS-GMFGFFFTE 410 (474)
Q Consensus 339 ~~~~~-----~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g-~~~~i~~~~ 410 (474)
...+. ......+.....+..++++.+.+ -+...+..++.+++.+.|+++. +... ..... ....+....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g----~~~~~~~~~~~~~~~~~~~~ 302 (364)
T d2e7ja1 227 SEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLG----IKQLGDNPHNHDLMFFHAEV 302 (364)
T ss_dssp CSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHTT----CEEESSSSCCSSEEEEECHH
T ss_pred ccccCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CeecCCCCCCcceEEEeccc
Confidence 11110 00011122333444455554433 1222333455666777776642 1110 00001 111111100
Q ss_pred CCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-cceEE-ecCCcHHHHHHHHHHHHHHHhh
Q 011959 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFT-SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~-~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
. ..+.. . .......+...+.++|+.....+. ..+++ ....|+|+|++++++|++++++
T Consensus 303 ~--~~~~~-~--~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~t~edid~~~~~l~ei~~~ 362 (364)
T d2e7ja1 303 L--YEISK-K--AKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 362 (364)
T ss_dssp H--HHHHH-H--SSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred h--HHHHH-H--hhccchHHHHHHHhcCCceecCCCcceEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 0 00000 0 000012345566777876544332 23344 4667999999999999999886
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.85 E-value=8.8e-21 Score=185.13 Aligned_cols=206 Identities=13% Similarity=0.112 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEe-CCCCCCc
Q 011959 119 QVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE-GCYHGHA 195 (474)
Q Consensus 119 ~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~-~~yhg~~ 195 (474)
.+.++..+.++. +.++.....++.+...+.+. ..+.+++++||++|+..++. ++.+++++|+.. ...|...
T Consensus 33 ~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~---al~~~~~vi~~~~~~~~~~~ 106 (366)
T d2aeua1 33 LIDEKDKALLNT---YIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATIL---ALKPKKVIHYLPELPGHPSI 106 (366)
T ss_dssp CCCHHHHHHHTS---TTHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH---HHCCSEEEEECSSSSCCTHH
T ss_pred CccHHHHHHHHH---hcCchhhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHH---HhCCCCEEEEecCCCcchhH
Confidence 344444444433 33344455677776666665 35789999999999999997 567778877763 3556655
Q ss_pred hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCC-CCcccCCHHHHHHHHH
Q 011959 196 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN-SGFIAPKPDFLNAIRR 274 (474)
Q Consensus 196 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~-~G~i~~~~~~l~~l~~ 274 (474)
...+...|. ..++++|+++|++.++ +++++|+++.++|+ ++.+.+ |++|.+
T Consensus 107 ~~~~~l~g~---------------------~~v~~~d~e~l~~~i~---~~tk~i~~~~p~n~~~~~~~~----l~~i~~ 158 (366)
T d2aeua1 107 ERSCKIVNA---------------------KYFESDKVGEILNKID---KDTLVIITGSTMDLKVIELEN----FKKVIN 158 (366)
T ss_dssp HHHHHHTTC---------------------EEEEESCHHHHHTTCC---TTEEEEEECBCTTSCBCCHHH----HHHHHH
T ss_pred HHHHHhcCC---------------------eEECCCCHHHHHHhcC---CCceEEEEEecCCCCcCCHHH----HHHHHH
Confidence 555544432 1234568999888776 36888888766554 333333 999999
Q ss_pred HHHHhCCEEEEeccccCc-ccC-CCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCC
Q 011959 275 ITKENGALLIFDEVMTGF-RLA-YGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350 (474)
Q Consensus 275 l~~~~g~llI~DEv~~g~-r~g-~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~ 350 (474)
+|++||+++|+||+|... ... .......+|. |++ +++|+++ |+++||+++++++++.+.. .....+++.+
T Consensus 159 ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~--di~~~S~sK~~~-g~~~G~i~~~~~~i~~~~~---~~~~~g~~~~ 232 (366)
T d2aeua1 159 TAKNKEAIVFVDDASGARVRLLFNQPPALKLGA--DLVVTSTDKLME-GPRGGLLAGKKELVDKIYI---EGTKFGLEAQ 232 (366)
T ss_dssp HHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTC--SEEEEETTSSSS-SCSCEEEEEEHHHHHHHHH---HHHTTTCBCC
T ss_pred HhccCcEEEEEecCccccccccccCCCHhhcCc--eEEEeccccccc-ccceeEEEecHHHHHHHHH---HHhcccccCC
Confidence 999999999999999432 221 1111223444 555 5667664 7999999999999998873 2233355678
Q ss_pred hHHHHHHHHHHHHh
Q 011959 351 PLAMTAGIHTLKRL 364 (474)
Q Consensus 351 ~~~~aaa~aal~~~ 364 (474)
|..+.++.++|+.+
T Consensus 233 ~~~~~a~~~aL~tl 246 (366)
T d2aeua1 233 PPLLAGIYRALKNF 246 (366)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888888754
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=2.2e-21 Score=195.83 Aligned_cols=353 Identities=12% Similarity=0.030 Sum_probs=205.9
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHh
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA 177 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~ 177 (474)
++.+||+.+.+++... .+++...+..+.....-++...+|.+++++++ +.+.+++++||++|++.|+++++.
T Consensus 40 ~~~~idl~sd~~t~~~-------~~~~~a~~~~gd~~Y~~~~~~~~le~~~a~l~-G~~~~~~~~sGt~A~~~a~~~~~~ 111 (467)
T d2v1pa1 40 EDVFIDLLTDSGTGAV-------TQSMQAAMMRGDEAFSGSRSYYALAESVKNIF-GYQYTIPTHQGRGAEQIYIPVLIK 111 (467)
T ss_dssp GGCSEECSCCTTCSCC-------CHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHT-CCSEEEEECSSTTTHHHHHHHHHH
T ss_pred cceeeeccccccchhh-------HHHHHhhccccchhhcCCchHHHHHHHHHHHH-CCCEEEECCCCHHHHHHHHHHHhh
Confidence 4457888877554321 22222332233322234666788999999999 788999999999999999997654
Q ss_pred h------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC-CCCeEEE
Q 011959 178 F------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN-KGEIAAI 250 (474)
Q Consensus 178 ~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~a~v 250 (474)
. .++...+.....||+.+.+....+|..+..+..+...... .........|+++|++.++.+ ++.++++
T Consensus 112 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~d~~~l~~~i~~~~~~~~~~i 187 (467)
T d2v1pa1 112 KREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTG----VRYDFKGNFDLEGLERGIEEVGPNNVPYI 187 (467)
T ss_dssp HHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTT----SCCTTTTCBCHHHHHHHHHHHCGGGCCCE
T ss_pred ccceEecCCCCcEEEEecccccccHHHHHHcCCeeeecccccccccc----cccccccCCCHHHHHHHHhhcCcccccee
Confidence 3 3456677788889988877777777643322211111000 000111233899999998753 4568899
Q ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc---ccCCCcccccc---------CCCCceeehhhhcC
Q 011959 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF---RLAYGGAQEYF---------GVTPDLTTLGKIIG 317 (474)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~---r~g~~~~~~~~---------g~~pdi~t~sK~l~ 317 (474)
++|++++++|..+++.+++++|+++|++||++||+|+++. |- ..+........ +-..|++++|+..+
T Consensus 188 ~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~ 267 (467)
T d2v1pa1 188 VATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD 267 (467)
T ss_dssp EEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSST
T ss_pred eecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCC
Confidence 9999999988888888899999999999999999999984 11 11111111111 12457777765554
Q ss_pred CCcceE-EEEecHH-HHHhhcCC---C-CcccccCCCCChHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 318 GGLPVG-AYGGRRD-IMEMVAPA---G-PMYQAGTLSGNPLAMTAGI-HTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 318 ~G~~iG-~~~~~~~-i~~~~~~~---~-~~~~~~t~~~~~~~~aaa~-aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
.+.+.| +++.+++ +....... . ...+..++++......++. ..+.....+++.++..++.++|.++|.+...
T Consensus 268 ~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~- 346 (467)
T d2v1pa1 268 AMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGV- 346 (467)
T ss_dssp TCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 333444 4455543 22222100 0 0112334444444444443 4455444467888888999999999987531
Q ss_pred cCCeeEEeeeceeEEEEEecCCCcCccccccc-chHHHHHHHHHHHHCCeEeccc-----------------CCcceEEe
Q 011959 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKS-ETTKFARFYRGMLEEGVYFAPS-----------------QFEAGFTS 452 (474)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~Gv~v~~~-----------------~~~~~~~~ 452 (474)
.+.... +....+....- ...... +........+.+.+.||..... ....+|++
T Consensus 347 --~v~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRla 417 (467)
T d2v1pa1 347 --VCQQAG--GHAAFVDAGKL-----LPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLT 417 (467)
T ss_dssp --CEEEEC--SSCEEEEHHHH-----STTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEC
T ss_pred --cccCCC--ccceeecchhh-----cCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEe
Confidence 111111 21111111100 000001 1111223445556778743211 11234553
Q ss_pred ---cCCcHHHHHHHHHHHHHHHh
Q 011959 453 ---LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 453 ---~~~t~e~i~~~l~~l~~~~~ 472 (474)
..+|+||||+++++|+++++
T Consensus 418 ip~~~~T~eeiD~vv~~l~~v~~ 440 (467)
T d2v1pa1 418 IPRATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHH
Confidence 45699999999999999885
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.82 E-value=1.7e-19 Score=171.63 Aligned_cols=315 Identities=13% Similarity=0.037 Sum_probs=169.1
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeC
Q 011959 111 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 189 (474)
Q Consensus 111 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (474)
++.| .||+|++|+.++........++.+..++++++++++++ ..++|+||+||||||..+++. ....+++++....
T Consensus 8 ~~~g-~~P~v~eAl~~~~~~~~~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~--~~~~~~~~~~~~~ 84 (340)
T d1svva_ 8 YSVG-MHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSL--ALRPWEAVIATQL 84 (340)
T ss_dssp CSSC-CCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHH--HCCTTEEEEEETT
T ss_pred CCCC-CCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHH--Hhhhccccccccc
Confidence 3444 69999999998765532222367788899999999987 467999999999999999984 3344556665554
Q ss_pred CCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHh---cCCCCeEEEEEccccCCCCcccCCH
Q 011959 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE---NNKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 190 ~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~---~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
.++...................+.. . ..+.+...+... ........+++....+++|.+.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (340)
T d1svva_ 85 GHISTHETGAIEATGHKVVTAPCPD-G-------------KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQ 150 (340)
T ss_dssp SHHHHSSTTHHHHTTCCEEEECCTT-S-------------CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHH
T ss_pred cceeeeecccccccceeeeeccccc-c-------------cccchhHHHHhhhhhcccCCcceeeeecccccccccccHH
Confidence 4433322222222111100000000 0 012333322222 1222345566666666677666655
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-cc--CCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCCCcc
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGF-RL--AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMY 342 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~--g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~ 342 (474)
+ +..+.++|+++|.++++|+++.+. .. +............++.++++..+.+ ...++............. .
T Consensus 151 ~-~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~- 225 (340)
T d1svva_ 151 E-LEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARH---L- 225 (340)
T ss_dssp H-HHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHH---H-
T ss_pred H-hhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhh---h-
Confidence 5 888999999999999999999654 22 1112111111123455566655543 334444444443332221 0
Q ss_pred cccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccc
Q 011959 343 QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 419 (474)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~ 419 (474)
...+.+.++...+++.+++..++. ....++..++.+++++.|++ .++....+..+.++.+.+.
T Consensus 226 ~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g~~~~~p~~~~~v~~~~~---------- 291 (340)
T d1svva_ 226 IKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEA----CGIRLAWPSASNQLFPILE---------- 291 (340)
T ss_dssp HHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH----TTCCBSSCCSSSEECBEEE----------
T ss_pred cccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhc----CCCeeecCCCceEEEEeCC----------
Confidence 111222222222333333333332 23344444444555555544 3433222334444444332
Q ss_pred cccchHHHHHHHHHHHHC----CeEecccCCcceEE--ecCCcHHHHHHHHHHHHH
Q 011959 420 KKSETTKFARFYRGMLEE----GVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~----Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~ 469 (474)
......|.++ |+...+.+...+|+ +..+|+||||+++++|++
T Consensus 292 --------~~~~~~l~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 292 --------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp --------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 1334455555 44455555556777 467899999999999986
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.81 E-value=3.1e-18 Score=167.86 Aligned_cols=329 Identities=13% Similarity=0.133 Sum_probs=201.6
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc---CCCCC-----CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG---TSFGA-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~~-----~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA 167 (474)
+.+-|+|..+ .|..+..|++++.+.++.. ..+.. ..+...++.+.++++++ +.++|+|++|||+|
T Consensus 6 ~~~~yld~~~------~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a 79 (381)
T d1elua_ 6 ANKTYFNFGG------QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG 79 (381)
T ss_dssp TTSEECCTTT------CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred CCCEEeeCCc------ccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHH
Confidence 3456777543 4556788999998887642 11111 22445567778888887 56789999999999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHH---hcCCCCccCCCCCCCCCCCCCCCceEEccCCC-HHHHHHHHhcC
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENN 243 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d-~~~le~~l~~~ 243 (474)
+..++... ...+++.|++.+..|++....... ..|..+..++. .... ...+ .+.+++.+
T Consensus 80 ~~~~~~~l-~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~--~~~~-----------~~~~~~~~l~~~i--- 142 (381)
T d1elua_ 80 CDIVLWGL-DWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPV--AATL-----------NQGDAAAVLANHL--- 142 (381)
T ss_dssp HHHHHHHS-CCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECC--GGGS-----------SSSCHHHHHHTTC---
T ss_pred hhhcchhh-hhcCCceEEEeccccceeeecccccccccccccccccc--cccc-----------ccchHHHHHHhhh---
Confidence 99998842 234567777777666553332222 12332211110 0000 0011 23333333
Q ss_pred CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh----CCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcC
Q 011959 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN----GALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIG 317 (474)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~----g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~ 317 (474)
.++++++++..+++++|.+.| +++|.++|++| ++++++|.+|+ + |. ...+.-...+|++ ++.|.++
T Consensus 143 ~~~t~~v~i~~~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~-~--g~-~~~~~~~~~~D~~~~s~~K~~~ 214 (381)
T d1elua_ 143 GPKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-A--GS-LPLDFSRLEVDYYAFTGHKWFA 214 (381)
T ss_dssp CTTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-B--TT-BCCCTTTSCCSEEEEESSSTTC
T ss_pred cccccccccccccccccccch----hhHHHHHHhhcccccccccccccccc-c--cc-cccccccccccccccccccccc
Confidence 357899999999999999999 99999999995 69999999995 1 11 1111223346766 4669998
Q ss_pred CCcceEEEEecHHHHHhhcCCCCcc-------------------cccCCCCChHHHHHHHHHHHHhcC----CCHHHHHH
Q 011959 318 GGLPVGAYGGRRDIMEMVAPAGPMY-------------------QAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLN 374 (474)
Q Consensus 318 ~G~~iG~~~~~~~i~~~~~~~~~~~-------------------~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~ 374 (474)
++..+|++..+++..+.+.+..... .....+.+.....+..++++.+.. +...++..
T Consensus 215 ~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~ 294 (381)
T d1elua_ 215 GPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAIC 294 (381)
T ss_dssp CCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccchhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhh
Confidence 7677899999988877665311000 001113445555666677766554 22346666
Q ss_pred HHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-CcceEEec
Q 011959 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSL 453 (474)
Q Consensus 375 ~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~~~~ 453 (474)
++.+++.++|+++.. ..+.......+.++.|.+.... ..+.+.+.|.++||.+...+ ...+|+++
T Consensus 295 ~~~~~l~~~L~~~~~-~~~~~~~~~~~~~vsf~~~~~~-------------~~~~i~~~L~~~gi~v~~~~~~~~lRis~ 360 (381)
T d1elua_ 295 QRSEFLWRGLNQLPH-VHCLATSAPQAGLVSFTVDSPL-------------GHRAIVQKLEEQRIYLRTIADPDCIRACC 360 (381)
T ss_dssp HHHHHHHHHHHHSTT-EEESCSSCCSSSEEEEEECSSS-------------CHHHHHHHHHHTTEECEEETTTTEEEEEC
T ss_pred hHHHHHHHHHhcCCC-eEecCCCCccccEEEEEcCCCC-------------CHHHHHHHHHhCCcEEEecCCCCEEEEec
Confidence 777778787776521 1111111234556666553211 12467888999999987654 34678864
Q ss_pred --CCcHHHHHHHHHHHHHH
Q 011959 454 --AHSSDDIQHTITAAEKV 470 (474)
Q Consensus 454 --~~t~e~i~~~l~~l~~~ 470 (474)
..|++|||++++.|++.
T Consensus 361 ~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 361 HYITDEEEINHLLARLADF 379 (381)
T ss_dssp CTTCCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 45999999999998763
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=2.4e-18 Score=169.35 Aligned_cols=203 Identities=20% Similarity=0.218 Sum_probs=134.8
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCC-----------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP-----------CLLENVLAEMVISAVP-SIEMVRFVNSGTEAC 168 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-----------~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~ 168 (474)
|+|..+. |..+|.|++|+.+.+.+...++.+ .+..+++++.+++.++ +.++|.|++|+|+++
T Consensus 5 YlD~aa~------~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l 78 (391)
T d1p3wa_ 5 YLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESD 78 (391)
T ss_dssp ECBTTTC------CCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHH
T ss_pred EeeCccc------cCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHH
Confidence 6775543 456899999999987654333322 1233456677777776 567999999999999
Q ss_pred HHHHHHhHh--hcCCcEEEEEeCCCCCCchhHHH--hcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC
Q 011959 169 MGVLRLARA--FTGRERIIKFEGCYHGHADPFLV--KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (474)
Q Consensus 169 ~~al~~ar~--~~~~~~ii~~~~~yhg~~~~~~~--~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (474)
..++..... ...++.||+.+..|++....... ..|..+..++... .+. -|++++++.++
T Consensus 79 ~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~-------------~d~~~~~~~i~--- 141 (391)
T d1p3wa_ 79 NLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR-NGI-------------IDLKELEAAMR--- 141 (391)
T ss_dssp HHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT-TSC-------------CCHHHHHHHCC---
T ss_pred HHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCC-CCe-------------EcHHHHHHhCC---
Confidence 998875432 34567777777776654332222 2233222221111 110 17899998886
Q ss_pred CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccCCCccccccCCCCcee--ehhhhcCCCcc
Q 011959 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLP 321 (474)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~ 321 (474)
+++++|+++.+++++|.+.| +++|.++|++||+++++|++|. |.. ......+ .+|++ +..|.+| +..
T Consensus 142 ~~T~lv~is~~~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~~g~~---~~d~~~~--~~D~~~~s~~k~~g-~~g 211 (391)
T d1p3wa_ 142 DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSVGKL---PIDLSQL--KVDLMSFSGHKIYG-PKG 211 (391)
T ss_dssp TTEEEEECCSBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTBTTB---CCCTTTS--CCSEEEEESTTTTS-CSS
T ss_pred CCcEEEEEECCCCCCeeECC----HHHHHHHhccCCcEEEEeeccccCCc---cccchhc--cccccccccccccC-CCc
Confidence 47899999999999999999 9999999999999999999995 211 1122223 35655 5668765 234
Q ss_pred eEEEEecHHHHHhhc
Q 011959 322 VGAYGGRRDIMEMVA 336 (474)
Q Consensus 322 iG~~~~~~~i~~~~~ 336 (474)
+|++..+++.+....
T Consensus 212 ~g~~~~~~~~~~~~~ 226 (391)
T d1p3wa_ 212 IGALYVRRKPRVRIE 226 (391)
T ss_dssp CEEEEECBTTBCCCC
T ss_pred eEEEEEecchhcccC
Confidence 788888877655443
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.79 E-value=2.3e-18 Score=169.85 Aligned_cols=306 Identities=11% Similarity=-0.006 Sum_probs=181.3
Q ss_pred ccCCCCCHHHHHH-HHHHHHh------c---CCCCCC---CHHHHHHHHHHHhhC---C----CCCeEEEeCCHHHHHHH
Q 011959 111 AIIGHADDQVLAA-LGETMKK------G---TSFGAP---CLLENVLAEMVISAV---P----SIEMVRFVNSGTEACMG 170 (474)
Q Consensus 111 ~~lG~~~p~v~~a-~~~~~~~------~---~~~~~~---~~~~~~la~~l~~~~---~----~~~~v~~~~sGseA~~~ 170 (474)
..++|++|.+.+. .++..+. + ++|.+. ..+..+|.+.+.+.+ + +..+|+++||.+|++.+
T Consensus 59 ~~~~~gdp~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~ 138 (425)
T d2hoxa1 59 ADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHG 138 (425)
T ss_dssp EECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHH
T ss_pred eeCCCCCCCCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHH
Confidence 4577788877776 3333222 1 112111 122345666665544 2 33469999999999999
Q ss_pred HHHHhHh------hcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC
Q 011959 171 VLRLARA------FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (474)
Q Consensus 171 al~~ar~------~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (474)
++....- ..++++||+..|.|-.+...+ ...+.. .+.++. |.+.+++.++
T Consensus 139 ~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~-~~~~~~-------------------~~~~~~-D~~~~~~~~~--- 194 (425)
T d2hoxa1 139 LVISLSPNMTATPDAPESKVVAHAPFYPVFREQT-KYFDKK-------------------GYVWAG-NAANYVNVSN--- 194 (425)
T ss_dssp HHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHH-HHSCBT-------------------TEEEEE-EGGGGTTCSC---
T ss_pred HHHHhccccccccCCCCCEEEEecCccccHHHHH-HHcCCC-------------------CCccCC-CHHHHHhhCC---
Confidence 9983210 134578999999886543322 222210 112222 5555554443
Q ss_pred CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcC-CCc
Q 011959 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIG-GGL 320 (474)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~-~G~ 320 (474)
+++++++++.++|++|.+... -.+++.+|.||+|.+- .+.-. ... ..+|+ +|||.++ +||
T Consensus 195 ~~~~ii~l~sPnNPtG~l~~~-----------v~~~~~~I~DEaY~~~~f~~~~---~~~--~~~Ivl~S~SK~fglaGl 258 (425)
T d2hoxa1 195 PEQYIEMVTSPNNPEGLLRHA-----------VIKGCKSIYDMVYYWPHYTPIK---YKA--DEDILLFTMSKFTGHSGS 258 (425)
T ss_dssp GGGEEEEEESSCTTTCCCCCC-----------SSTTCEEEEECTTCSTTTSCCC---SCB--CCSEEEEEHHHHTSCGGG
T ss_pred CCceEEEEECCCCCCcchhhh-----------hhhCCEEEEeccccCccccchh---hhc--CCeEEEEeCHHhccCcch
Confidence 356777777777888876431 2368999999999643 21111 111 12333 7999999 899
Q ss_pred ceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc--------C-CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 321 PVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--------E-PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 321 ~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--------~-~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
|+||+++ ++.+++.+. ......+++.+.+++.+++++|+... . .++.+..++..+.-++.|.+.+..
T Consensus 259 RiGw~i~~~~~i~~~~~---~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~ 335 (425)
T d2hoxa1 259 RFGWALIKDESVYNNLL---NYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ 335 (425)
T ss_dssp CCEEEEECCHHHHHHHH---HHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred heeeEEeCCHHHHHHHH---HhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999755 566777665 33445678889999999998887531 1 334333333332223333333332
Q ss_pred cCC---------------eeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----CcceE
Q 011959 391 AGH---------------AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGF 450 (474)
Q Consensus 391 ~~~---------------~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~ 450 (474)
.+. .......+.+.++.+..+. ...+.+.|.++||++.|+. ..++|
T Consensus 336 ~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~--------------~~~~~~lL~e~gI~v~pGs~FG~~~~yvR 401 (425)
T d2hoxa1 336 SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE--------------DKDCYQTFQNGRINTQNGVGFEASSRYVR 401 (425)
T ss_dssp SSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGG--------------GCSHHHHHHHTTEECEEGGGGTSCTTEEE
T ss_pred cCCceeeccCCccceeeeeeccCCCcceeeeeCCCCh--------------HHHHHHHHHhCCEEEEechhcCCCCCEEE
Confidence 221 1123344555555543211 0224566789999998862 34689
Q ss_pred EecCCcHHHHHHHHHHHHHHHhh
Q 011959 451 TSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 451 ~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+++..++|++++++++|++++++
T Consensus 402 isl~~~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 402 LSLIKTQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp EECSSCHHHHHHHHHHHHHHHTC
T ss_pred EEecCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999874
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=3.1e-16 Score=154.62 Aligned_cols=324 Identities=15% Similarity=0.161 Sum_probs=206.0
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC---CCC------CHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAP------CLLENVLAEMVISAVP-S-IEMVRFVNSGTEAC 168 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~~------~~~~~~la~~l~~~~~-~-~~~v~~~~sGseA~ 168 (474)
-|+|..+. |..++.|++++.+.+.+.... +.. .+..++.++.+++.++ . .+.++|++++|+++
T Consensus 24 iYld~a~~------~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~ 97 (405)
T d1jf9a_ 24 AYLDSAAS------AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGI 97 (405)
T ss_dssp EECCTTTC------CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred EEEeCccc------cCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHH
Confidence 37775443 446899999999988763211 111 1334566778888886 3 47899999999999
Q ss_pred HHHHHHh--HhhcCCcEEEEEeCCCCCCchhHHHh---cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC
Q 011959 169 MGVLRLA--RAFTGRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (474)
Q Consensus 169 ~~al~~a--r~~~~~~~ii~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (474)
..+++.. ....+++.|++.+..||......... .|..+...+.. ..+. -|++.+++++.
T Consensus 98 ~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~-~~g~-------------~~~~~~~~~i~-- 161 (405)
T d1jf9a_ 98 NLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLN-PDGT-------------LQLETLPTLFD-- 161 (405)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBC-TTSC-------------BCGGGHHHHCC--
T ss_pred HHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCC-CCCc-------------CCHHHHHHhcc--
Confidence 9888742 13355678888888888766655443 24333222111 1111 16777777765
Q ss_pred CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC-CccccccCCCCcee--ehhhhcCCCc
Q 011959 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLT--TLGKIIGGGL 320 (474)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g~~pdi~--t~sK~l~~G~ 320 (474)
+++++|.++.+.+.+|.+.| +++|.++|+++|+++++|-+|+ .|. ......+ .+|++ +.-|.+| +-
T Consensus 162 -~~t~lv~~~~v~~~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~---~g~~~id~~~~--~~D~~~~s~hK~~G-p~ 230 (405)
T d1jf9a_ 162 -EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA---VMHHPVDVQAL--DCDFYVFSGHKLYG-PT 230 (405)
T ss_dssp -TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT---TTTSCCCHHHH--TCSEEEEEGGGTTS-CS
T ss_pred -CCcEEEEEecCCCcccccCc----hHHhhhHHHHcCCeeeccccee---ccccccchhhc--CCceeecccccccc-CC
Confidence 47999999999999999999 9999999999999999999995 121 1222233 45766 4669875 33
Q ss_pred ceEEEEecHHHHHhhcCCCC---------------------cccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 011959 321 PVGAYGGRRDIMEMVAPAGP---------------------MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 379 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~---------------------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~ 379 (474)
.+|++..++++++.+.+... .+..+ +.|..+..+..++++.+.+.+ .+++.+....
T Consensus 231 G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~G--T~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~ 307 (405)
T d1jf9a_ 231 GIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAG--TPNTGGIIGLGAALEYVSALG-LNNIAEYEQN 307 (405)
T ss_dssp SCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCS--SCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHH
T ss_pred CceeeeechhhhcccCcccccccccCccccccccccccchhhhcCC--CCcHHHHHHHHHHHHHHHHhC-hHHHHHHHHH
Confidence 38999999998876543110 01112 346777777778888765422 2334444444
Q ss_pred HHHHHHHHhhhcCCeeEE--eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------------
Q 011959 380 LTQGIIDAGKKAGHAICG--GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------ 445 (474)
Q Consensus 380 l~~~L~~~~~~~~~~~~v--~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------------ 445 (474)
|.+.+.+.....+..... ...+.++.+.+...+ ...+...|.++||.++.+.
T Consensus 308 L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~~--------------~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~ 373 (405)
T d1jf9a_ 308 LMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHH--------------AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNV 373 (405)
T ss_dssp HHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCC--------------HHHHHHHHHHTTEECEEECTTCHHHHHHTTC
T ss_pred HHHHHHhhhhcCCcccccCCcCcCcEEEEEcCCCC--------------HHHHHHHHHHCCcEEEccchhhhhHHHhcCC
Confidence 444444444444433211 123445555553211 1456677788999886432
Q ss_pred CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 446 FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 ~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
...+|++ ...|++|||++++.|+++.+-
T Consensus 374 ~g~iRiS~~~ynt~eDid~l~~~l~~i~r~ 403 (405)
T d1jf9a_ 374 PAMCRASLAMYNTHEEVDRLVTGLQRIHRL 403 (405)
T ss_dssp SCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 2346776 456999999999999998763
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.73 E-value=2.4e-15 Score=148.34 Aligned_cols=323 Identities=14% Similarity=0.127 Sum_probs=201.9
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--CCCC-------CHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAP-------CLLENVLAEMVISAVP-S-IEMVRFVNSGTEAC 168 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~-------~~~~~~la~~l~~~~~-~-~~~v~~~~sGseA~ 168 (474)
-|+|..+. |..++.|++++.+.+.+... .... .+..++..+.++++++ . .+.++|++++++++
T Consensus 24 iYld~a~~------~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~ 97 (408)
T d1t3ia_ 24 VYLDNAAT------SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAI 97 (408)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred EEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHH
Confidence 37775544 44689999999998876321 1111 1344566778888886 2 47799999999999
Q ss_pred HHHHHHhH--hhcCCcEEEEEeCCCCCCchhHHHh---cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC
Q 011959 169 MGVLRLAR--AFTGRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (474)
Q Consensus 169 ~~al~~ar--~~~~~~~ii~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (474)
..++.... ....++.|++.+..|++........ .|..+...+.+.... .+.+.+++++.
T Consensus 98 n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~--------------~~~~~l~~~~~-- 161 (408)
T d1t3ia_ 98 NLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQES--------------FDLEHFKTLLS-- 161 (408)
T ss_dssp HHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSS--------------BCHHHHHHHCC--
T ss_pred HHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeecccccc--------------ccHHHhhhccC--
Confidence 88876532 2345677777776776655444322 233222221111111 16888888765
Q ss_pred CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC-CccccccCCCCceee--hhhhcCCCc
Q 011959 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTT--LGKIIGGGL 320 (474)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g~~pdi~t--~sK~l~~G~ 320 (474)
+++++|.+..+++.+|.+.| +++|.++|+++|+++|+|-+|+ .|. ......+ .+|+++ .-|.+| +.
T Consensus 162 -~~t~lv~i~~~~~~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~---~g~~~id~~~~--~~D~~~~s~hK~~g-p~ 230 (408)
T d1t3ia_ 162 -EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS---APHYPLDVQLI--DCDWLVASGHKMCA-PT 230 (408)
T ss_dssp -TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT---TTTSCCCHHHH--TCSEEEEEGGGTTS-CT
T ss_pred -CCceEEEEecccccccccCc----HHHHhhhhhccCceeeecccee---ccccccccccc--CCceEEeccccccC-CC
Confidence 47999999999999999999 9999999999999999999995 111 1122233 457765 558754 34
Q ss_pred ceEEEEecHHHHHhhcCCCCc------------------ccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHH
Q 011959 321 PVGAYGGRRDIMEMVAPAGPM------------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGE 379 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~------------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~ 379 (474)
.+|+++.+++......+.... ...-+-+.|..+++++.++++.+.+ +...++..++.++
T Consensus 231 G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~ 310 (408)
T d1t3ia_ 231 GIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHY 310 (408)
T ss_dssp TCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CccccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhH
Confidence 589999999987765421000 0001123466667777788887665 3444555555555
Q ss_pred HHHHHHHHhhhcCCeeEE------eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--------
Q 011959 380 LTQGIIDAGKKAGHAICG------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------- 445 (474)
Q Consensus 380 l~~~L~~~~~~~~~~~~v------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------- 445 (474)
+.+.+.+ .+..... ...+.++.+.+... ....+...|.++||.+..+.
T Consensus 311 l~~~~~~----~~~~~~~~~~~~~~~~~~iv~f~~~~~--------------~~~~v~~~L~~~gI~v~~G~~c~~~~~~ 372 (408)
T d1t3ia_ 311 LWQGLGQ----IPQLRLYGPNPKHGDRAALASFNVAGL--------------HASDVATMVDQDGIAIRSGHHCTQPLHR 372 (408)
T ss_dssp HHHHHHT----CTTEEEESCCGGGSCBCSEEEEEETTB--------------CHHHHHHHHHTTTEECBCSCTTCHHHHH
T ss_pred Hhhhhcc----CccccccCCCccccCcceEEEEEeCCC--------------CHHHHHHHHhhCCcEEecCcccccHHHH
Confidence 5555543 3322111 11233444444221 12467778888999886532
Q ss_pred ----CcceEEec--CCcHHHHHHHHHHHHHHHhh
Q 011959 446 ----FEAGFTSL--AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 ----~~~~~~~~--~~t~e~i~~~l~~l~~~~~~ 473 (474)
...+|+++ ..|++|||++++.|+++++.
T Consensus 373 ~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 373 LFDASGSARASLYFYNTKEEIDLFLQSLQATIRF 406 (408)
T ss_dssp HTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 23477764 55999999999999999864
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.72 E-value=9.6e-17 Score=159.92 Aligned_cols=294 Identities=11% Similarity=0.017 Sum_probs=172.8
Q ss_pred HHHHHHHHHhhCCCCCeEEEeCC-HHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCC
Q 011959 141 ENVLAEMVISAVPSIEMVRFVNS-GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVP 218 (474)
Q Consensus 141 ~~~la~~l~~~~~~~~~v~~~~s-GseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~ 218 (474)
+.++..++++.++......++.+ +++++.+++...|...+++.|| ....-|.....++...|.....+.. +.
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi-~s~~~H~s~~k~~~~~g~~~~~v~~~~~----- 188 (434)
T d2z67a1 115 TNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVI-YPYASHKSPIKAVSFVGMNMRLVETVLD----- 188 (434)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEE-EECCCCHHHHHHHHHTTCEEEEECCEEE-----
T ss_pred HHHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEE-EeccCCHHHHHHHHHhCCcceEEEeecC-----
Confidence 34555666777764455555544 4455556665544444555555 4566677676776666654322110 00
Q ss_pred CCCCCceEEccCCCHHHHHHHHhcC--CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC
Q 011959 219 KGATYETLTAPFNDVSALENLFENN--KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 295 (474)
Q Consensus 219 ~~~~~~~~~~~~~d~~~le~~l~~~--~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g 295 (474)
.+... .|+++|++.++++ .+.+.+|++...++.+|.+.+ +++|.++|++||++||+|++|.++ ...
T Consensus 189 ----~~~~~---~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~~ 257 (434)
T d2z67a1 189 ----GDRVY---VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYY 257 (434)
T ss_dssp ----TTEEE---CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred ----CCccC---CCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhhhc
Confidence 00111 2899999999763 246778888887778898888 999999999999999999999643 211
Q ss_pred CCccccccCCCCceee--hhhhcCCCcceEEEE-ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 296 YGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYG-GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~-~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
............|+++ ..|.++++...|++. .++.+++.+.. ...+.+...+...+.+++..+......+..++
T Consensus 258 ~~~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~ 334 (434)
T d2z67a1 258 LEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL---SYPGRASATPVVNTLVSLLSMGSKNYLELVKN 334 (434)
T ss_dssp HHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHT---TSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCcceEEEcCccccccCCCccccccCcHHHHHHHHh---hcccccccchHHHHHHHHHHHHHhcchhHHHH
Confidence 1111111233457664 569998766677774 45667777763 23333333333333333333322112557777
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc--------
Q 011959 373 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-------- 444 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------- 444 (474)
..++.+++++.|+++....+...........+.+.+.. + ...+...|.++||.....
T Consensus 335 ~~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~------------~---~~~l~~~L~~~gI~g~~v~~~l~~~g 399 (434)
T d2z67a1 335 QKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNS------------D---PVEIAAKLYNLRVTGPRGIKKTDHFG 399 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECSS------------C---HHHHHHHHHHTTEESCEEECTTCHHH
T ss_pred HHHHHHHHHHHHHHhhhhcCceecCCCCCceeeeecCC------------C---HHHHHHHHHHcCCeeeehhhhccccC
Confidence 88888999999988765544321111111222222211 1 145777888999854211
Q ss_pred -------CCcceEE--ecCCcHHHHHHHHHHHHH
Q 011959 445 -------QFEAGFT--SLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 445 -------~~~~~~~--~~~~t~e~i~~~l~~l~~ 469 (474)
....+++ +...|+||||+++++|++
T Consensus 400 ~~~~~~~~~~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 400 NCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp HTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred eeeecccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 0122344 356799999999999986
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=9.6e-17 Score=157.44 Aligned_cols=315 Identities=10% Similarity=0.043 Sum_probs=189.5
Q ss_pred CHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCC
Q 011959 117 DDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~~--~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg 193 (474)
+|+|++|+.... ..+.+ ...+...+..+.|++.++- ...|+|+.|||+++++++.. .+.+++++++...++++
T Consensus 31 ~~~Vl~am~~~~--i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~--l~~~~~~~~~~~~~~~~ 106 (388)
T d1h0ca_ 31 PPRIMAAGGLQM--IGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVN--VLEPGDSFLVGANGIWG 106 (388)
T ss_dssp CHHHHHHHTCCC--CCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHH--HCCSSCCEEECBSSHHH
T ss_pred CHHHHHHhCcCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHH--hhccCCceeeeccccee
Confidence 688877764211 11111 1234566778888888752 33688999999999999985 34567778777666655
Q ss_pred CchhHHHh-cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHH
Q 011959 194 HADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (474)
Q Consensus 194 ~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (474)
........ .+........+....+ |.+.+++.+... ++++|.+..+.+.+|.+.| +++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~--~~~~v~~~~~~n~tG~i~p----i~~i 166 (388)
T d1h0ca_ 107 QRAVDIGERIGARVHPMTKDPGGHY--------------TLQEVEEGLAQH--KPVLLFLTHGESSTGVLQP----LDGF 166 (388)
T ss_dssp HHHHHHHHHHC--CBCCBCCTTCCC--------------CHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTH
T ss_pred eeeccccccccccccccccCCcccc--------------chHHHHHHhccC--CcceEEEeeeeeccccccC----HHHH
Confidence 43322222 2222222111211111 677777666543 4677888888888999999 8889
Q ss_pred HHHHHHhCCEEEEecccc-CcccCCCccccccCCCCceee--hhhhcCCCcceEEEEecHHHHHhhcCCCCc--------
Q 011959 273 RRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAPAGPM-------- 341 (474)
Q Consensus 273 ~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~-------- 341 (474)
.++|++||+++++|.+|+ |. .....+ ....|+++ ..|.+++...+|+++.+++.++.+......
T Consensus 167 ~~~~~~~g~~~~vD~~qs~g~---~~~d~~--~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (388)
T d1h0ca_ 167 GELCHRYKCLLLVDSVASLGG---TPLYMD--RQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDI 241 (388)
T ss_dssp HHHHHTTTCEEEEECTTTTTT---SCCCTT--TTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCH
T ss_pred HHHhhcccccceecccccccc---cccccc--ccccceecccccccccCCCceEEEeecHHHHHhhhhcccccccccccc
Confidence 999999999999999995 21 111222 23346664 458887544578888888887766431100
Q ss_pred ------------ccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-eeceeEE
Q 011959 342 ------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFG 405 (474)
Q Consensus 342 ------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~ 405 (474)
........+..+..+..++++.+.+ +...++..++.+++++.+.+..... ...+-. ....++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~-~~~~~~~rs~~i~~ 320 (388)
T d1h0ca_ 242 KWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQL-FVKDPALRLPTVTT 320 (388)
T ss_dssp HHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCB-SSCSGGGBCTTEEE
T ss_pred chhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCccc-ccCCHHHcCCeEEE
Confidence 0011123445566666777777655 3445555666666677666653211 111101 1122334
Q ss_pred EEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEe---cCCcHHHHHHHHHHHHHHHhhC
Q 011959 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTS---LAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~---~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+.+. +.....++...|+++ ||.+..+. ...+|++ ...|+||||+++++|+++++++
T Consensus 321 ~~~p-------------~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l 384 (388)
T d1h0ca_ 321 VAVP-------------AGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHC 384 (388)
T ss_dssp EECC-------------TTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHS
T ss_pred EECC-------------CCCCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4432 112235677777655 99887653 2357886 3568999999999999999874
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.71 E-value=1.4e-16 Score=158.88 Aligned_cols=345 Identities=14% Similarity=0.000 Sum_probs=188.9
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhc
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT 179 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~ 179 (474)
.+||+.+-.++. .+.+++..++..|.....-++...+|.+.+++++ +.+.+++++||+.|+..+++ ++.
T Consensus 43 v~iDl~sDs~t~-------am~~~~~aa~~~GDd~Y~~dpt~~~lE~~~a~l~-G~e~al~~~SGt~An~~a~~---~l~ 111 (456)
T d1c7ga_ 43 IYIDLLTDSGTN-------AMSDKQWAGMMIGDEAYAGSENFYHLEKTVKELF-GFKHIVPTHQGRGAENLLSQ---LAI 111 (456)
T ss_dssp CSEECSCSSSCC-------CEEHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHH-CCSEEEEESSHHHHHHHHHH---HHC
T ss_pred eeeEcccCCCcc-------cchHHHHHHHhccchhccCCchHHHHHHHHHHHh-CCCeEEECCCHHHHHHHHHH---Hhc
Confidence 467877653321 1233343443344322234666677888888888 78999999999999999999 567
Q ss_pred CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-CCHHHHHHHHhcC-CCCeEEEEEccccC
Q 011959 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENN-KGEIAAIILEPVVG 257 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~~le~~l~~~-~~~~a~vi~ep~~~ 257 (474)
++++.|+....|+... ......|......... .+... .....+.. .|++.|++.|+++ ++.++.+++|..+|
T Consensus 112 ~~Gd~Vi~~~~f~~~~-~~i~~~g~~~~~~~~~--~~~~~---~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n 185 (456)
T d1c7ga_ 112 KPGQYVAGNMYFTTTR-FHQEKNGATFVDIVRD--EAHDA---SLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVN 185 (456)
T ss_dssp CTTEEEEESSCCHHHH-HHHHHTTEEEEECBCG--GGGCT---TCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBT
T ss_pred CCCCeEecCcchHHHH-HHHHHcCceeeecccc--ccccc---cccCCccccCCHHHHHHHhhhcCCccceeEEeeeccc
Confidence 7777777655554422 2233333221110000 00000 00001111 2899999999864 35678888888888
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C---c-c--c-CCCc-c-----ccccCCCCcee--ehhhhcCCCcc
Q 011959 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-G---F-R--L-AYGG-A-----QEYFGVTPDLT--TLGKIIGGGLP 321 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g---~-r--~-g~~~-~-----~~~~g~~pdi~--t~sK~l~~G~~ 321 (474)
.+|..+.+.+.+++|+++|++||+.|+.|+++. | | . . +... . .+.++ ..|++ +++|.++++ .
T Consensus 186 ~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~-~ad~~s~s~~K~~~~~-~ 263 (456)
T d1c7ga_ 186 LAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFS-YADGCTMSGKKDCLVN-I 263 (456)
T ss_dssp TTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHT-TCSEEEEETTTTTCCS-S
T ss_pred ccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhcccccc-ccccEEEecccccccc-c
Confidence 766677777779999999999999999999984 1 1 0 0 0000 0 00111 24665 466777642 1
Q ss_pred eEEEEec-HHHHHhhcCCCCc-ccccCCCCC-hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe
Q 011959 322 VGAYGGR-RDIMEMVAPAGPM-YQAGTLSGN-PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (474)
Q Consensus 322 iG~~~~~-~~i~~~~~~~~~~-~~~~t~~~~-~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (474)
.|+++.+ +++.+.++..... ....++++. ...+.+....+....+.+..++..++.++|.++|.+... ++ ..+
T Consensus 264 GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~g~--~v--v~p 339 (456)
T d1c7ga_ 264 GGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREAGV--PI--VEP 339 (456)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTC--CB--CSS
T ss_pred eeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccC--Cc--ccC
Confidence 3555554 4565555421011 112233333 233333334455444455666667778888888887632 21 112
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHH-HHHHHHHCCeEecccC-----------------CcceEEe---cCCcH
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFAR-FYRGMLEEGVYFAPSQ-----------------FEAGFTS---LAHSS 457 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~Gv~v~~~~-----------------~~~~~~~---~~~t~ 457 (474)
..+....++..... .. ...+...... +.+.+.+.||...+.+ ...+|++ ..+|+
T Consensus 340 ~g~~~v~vda~~~~-~~----i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~ 414 (456)
T d1c7ga_ 340 TGGHAVFLDARRFC-PH----LTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTY 414 (456)
T ss_dssp CCSSEEEEEHHHHC-TT----SCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCH
T ss_pred CCCcceeEechhhc-cC----CCcccccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCH
Confidence 23333333321100 00 0011111223 3344457788654321 0124664 34699
Q ss_pred HHHHHHHHHHHHHHh
Q 011959 458 DDIQHTITAAEKVLR 472 (474)
Q Consensus 458 e~i~~~l~~l~~~~~ 472 (474)
++||.++++|+++++
T Consensus 415 e~iD~Vae~i~~v~~ 429 (456)
T d1c7ga_ 415 AHMDVVADGIIKLYQ 429 (456)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.69 E-value=1.5e-15 Score=149.65 Aligned_cols=327 Identities=13% Similarity=0.063 Sum_probs=198.6
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC--------CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--------APCLLENVLAEMVISAVP-SIEMVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--------~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~ 168 (474)
+..|+|..+ .|..+..|.+++.+.+.+..... ...+..++..+.++++++ ..++++|++++|+++
T Consensus 27 ~~iYLd~as------~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~ 100 (404)
T d1qz9a_ 27 GVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINL 100 (404)
T ss_dssp TCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHH
T ss_pred CCEEcCCcc------cccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHH
Confidence 456777543 35567889999999886532111 113456688889999987 678999999999999
Q ss_pred HHHHHHhH----hhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC
Q 011959 169 MGVLRLAR----AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (474)
Q Consensus 169 ~~al~~ar----~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (474)
..++..+. .....+.+|+.+..++......... +..+... + .... ...+++.+++++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~--~-----------~~~~-~~~~~~~~~~~i~--- 162 (404)
T d1qz9a_ 101 FKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEG-LADMLQQ--G-----------YTLR-LVDSPEELPQAID--- 162 (404)
T ss_dssp HHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHH-HHHHHCS--S-----------CEEE-EESSGGGHHHHCS---
T ss_pred HHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhh-hheeeee--c-----------eecc-ccccchhHHHhcC---
Confidence 88775321 2234566777776665533222211 1111000 0 0011 1115677777776
Q ss_pred CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccCCCccccccCCCCcee--ehhhhcCCCc-
Q 011959 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGGL- 320 (474)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~- 320 (474)
+++++|.+..+++.+|.+.| +++|.++|+++|+++++|-+|+ |. .....+.. .+|.+ +..|.+.+|-
T Consensus 163 ~~T~lV~i~~v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~~g~---~~~~~~~~--~~d~~~~s~~K~~~~~~g 233 (404)
T d1qz9a_ 163 QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHSAGA---VPVDLHQA--GADYAIGCTYKYLNGGPG 233 (404)
T ss_dssp TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTTTT---SCCCHHHH--TCSEEEECSSSTTCCCTT
T ss_pred CCceEEEEecccccccceec----HHHHhccccccccceeEEeeccccc---cccccccc--cceEEEEechhhcccCCc
Confidence 47899999999999999999 9999999999999999999995 21 11122223 34554 4558876543
Q ss_pred ceEEEEecHHHHHhhcCCCCc--------------------ccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHH
Q 011959 321 PVGAYGGRRDIMEMVAPAGPM--------------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKIT 377 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~--------------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~ 377 (474)
-+|++..+++..+.+...... ........+..+.....++++.+.+ +...++.....
T Consensus 234 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 313 (404)
T d1qz9a_ 234 SQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALT 313 (404)
T ss_dssp CCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred eEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhH
Confidence 367777887776554321000 0011123455666666666666654 33334444444
Q ss_pred HHHHHHHHHHhhhcCCee----EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEec
Q 011959 378 GELTQGIIDAGKKAGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSL 453 (474)
Q Consensus 378 ~~l~~~L~~~~~~~~~~~----~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~ 453 (474)
..+.+.+..+....++.. +....+.++.+.+. + ...+.+.|.++||++.......+|+++
T Consensus 314 ~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~-------------~---~~~v~~~L~~~gi~~~~r~~~~lRiS~ 377 (404)
T d1qz9a_ 314 DLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP-------------E---GYAVIQALIDRGVIGDYREPRIMRFGF 377 (404)
T ss_dssp HHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT-------------T---HHHHHHHHHTTTEECEEETTTEEEEEC
T ss_pred HHHHHHHHhhccCCCEEEECCCCccceeeEEEEecC-------------C---HHHHHHHHHHCCCEEeecCCCeEEEEC
Confidence 444444444433222211 11122344444331 1 256788899999976543334688875
Q ss_pred C---CcHHHHHHHHHHHHHHHhh
Q 011959 454 A---HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~---~t~e~i~~~l~~l~~~~~~ 473 (474)
. .|++|||+++++|++++++
T Consensus 378 ~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 378 TPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp CTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Confidence 3 5899999999999999875
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=5.8e-15 Score=143.89 Aligned_cols=325 Identities=19% Similarity=0.215 Sum_probs=184.1
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--CCCC------CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAP------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACM 169 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~------~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~ 169 (474)
+-|+|..++ +..++.|++++.+.++.... .+.+ .+..++..++++++++ ..++|+|++|+|+++.
T Consensus 2 ~iyld~a~~------~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~ 75 (376)
T d1eg5a_ 2 RVYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESIN 75 (376)
T ss_dssp CEECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHH
T ss_pred EEEEECccc------ccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHH
Confidence 457776543 44689999999998876311 1111 1223344567777776 5789999999999999
Q ss_pred HHHHHh-HhhcCCcEEEEEeCCCCCCchhHHHh---cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCC
Q 011959 170 GVLRLA-RAFTGRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (474)
Q Consensus 170 ~al~~a-r~~~~~~~ii~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (474)
.++... .....++++++....+|+........ .|..+..++... .+. -|+++++++++ +
T Consensus 76 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~-~~~-------------id~~~l~~~i~---~ 138 (376)
T d1eg5a_ 76 WILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS-RGV-------------VKLEELEKLVD---E 138 (376)
T ss_dssp HHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT-TSC-------------BCHHHHHHHCC---T
T ss_pred hhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCC-CCe-------------ECHHHHHHhcC---C
Confidence 988643 23445566666666666655544432 233322222111 110 17899999886 4
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh--CCEEEEecccc-CcccCCCccccccCCCCcee--ehhhhcCCCc
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGGL 320 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~--g~llI~DEv~~-g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~ 320 (474)
++++|++..+++.+|.+.+ ++++.++|+.+ ++++++|.+|. |. ...... ...+|++ +..|.+|+ -
T Consensus 139 ~t~lv~is~v~~~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~~g~---~~~d~~--~~~~D~~~~s~~K~~gp-~ 208 (376)
T d1eg5a_ 139 DTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQTIGK---IPFSLE--KLEVDYASFSAHKFHGP-K 208 (376)
T ss_dssp TEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTTTTT---SCCCCT--TTCCSEEEEEGGGGTSC-T
T ss_pred CceEEEEECCccccceeee----ehhhhhhhhhcccCceeEEEeeecccc---cccccc--ccCccceecccceeecC-C
Confidence 7899999999999999999 88899998776 89999999994 21 011122 2345655 67899763 2
Q ss_pred ceEEEEecHHHHHhhcCC----CCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCe
Q 011959 321 PVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (474)
..|++..+++. .+.+. ...........+......+.+..+.... ............++.+.|..........
T Consensus 209 G~~~l~~~~~~--~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 286 (376)
T d1eg5a_ 209 GVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITP 286 (376)
T ss_dssp TCEEEEECTTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSC
T ss_pred CceeEEeccCc--ccCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhcccccccccccccc
Confidence 24555455442 12210 0011111222344454444444443322 2233334444455555554331111000
Q ss_pred eEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-----------------------cceEE
Q 011959 395 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----------------------EAGFT 451 (474)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----------------------~~~~~ 451 (474)
. .......+.+.+.. .....+...|.++||.++.+.. +.+|+
T Consensus 287 ~-~~~~~~~~~~~~~~--------------~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRi 351 (376)
T d1eg5a_ 287 L-EISLPNTLSVSFPN--------------IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRI 351 (376)
T ss_dssp T-TSBCTTEEEEECTT--------------CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEE
T ss_pred c-cccccceeeeccCC--------------CCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEE
Confidence 0 00111111222211 1125667777889998865310 13677
Q ss_pred ecC--CcHHHHHHHHHHHHHHHhh
Q 011959 452 SLA--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 452 ~~~--~t~e~i~~~l~~l~~~~~~ 473 (474)
++. .|+||||++++.|+++++-
T Consensus 352 S~~~ynt~edid~l~~~L~~iv~~ 375 (376)
T d1eg5a_ 352 SLCKYNTEEEVDYFLKKIEEILSF 375 (376)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHHhh
Confidence 654 4999999999999999864
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.66 E-value=4.8e-15 Score=143.55 Aligned_cols=296 Identities=16% Similarity=0.175 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHhhCC-CCCe--EEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHh-cCCCCccCCCCCC
Q 011959 139 LLENVLAEMVISAVP-SIEM--VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDS 214 (474)
Q Consensus 139 ~~~~~la~~l~~~~~-~~~~--v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~ 214 (474)
+..++..+.++++++ ..+. ++|++|||++++.++.. ....++++++....+++........ .+........+..
T Consensus 33 ~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (361)
T d1m32a_ 33 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGS--ALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEV 110 (361)
T ss_dssp TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHH--SCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHH--hhhhccccceeeehhhhhhHHHHhhhhhccccccccccc
Confidence 445677777777775 2333 77889999999999984 3344566666665554433322222 2221111000000
Q ss_pred CCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Ccc
Q 011959 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFR 293 (474)
Q Consensus 215 ~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r 293 (474)
.. .+.+..+..... .++++.+.+..+.+.+|.+.| +++|.++|++||+++++|-+|+ |.
T Consensus 111 ~~--------------~~~~~~~~~~~~-~~~~~~v~~~~~~~~tG~~~~----i~~i~~~~~~~g~~~~vDa~qs~G~- 170 (361)
T d1m32a_ 111 AR--------------PDVQAIDAILNA-DPTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSSFGG- 170 (361)
T ss_dssp SC--------------CCHHHHHHHHHH-CTTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTTTTT-
T ss_pred CC--------------ccchhhHHHHHh-ccCccceEEEeeecccccchh----hhhhhhhhcccceeeEeecccccCc-
Confidence 00 022222222222 246888889999999999999 9999999999999999999996 21
Q ss_pred cCCCccccccCCCCceeehh--hhcCCCcceEEEEecHHHHHhhcCCCCc---------------ccccCCCCChHHHHH
Q 011959 294 LAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAGPM---------------YQAGTLSGNPLAMTA 356 (474)
Q Consensus 294 ~g~~~~~~~~g~~pdi~t~s--K~l~~G~~iG~~~~~~~i~~~~~~~~~~---------------~~~~t~~~~~~~~aa 356 (474)
... +......|++++| |.++|..-+|++..+++.++...+.... .....++.+...+.+
T Consensus 171 --~~~--d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 246 (361)
T d1m32a_ 171 --IPM--DIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLA 246 (361)
T ss_dssp --SCC--CTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHH
T ss_pred --ccc--cccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhH
Confidence 111 2223346777655 8887544589999999888776542110 011223445666666
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee--EEeee-ceeEEEEEecCCCcCcccccccchHHHHHHHHH
Q 011959 357 GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI--CGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433 (474)
Q Consensus 357 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~v~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (474)
...+++...++...+...++.+...+.+.+.....+... +.... ..++.+.+.... .....++.+.
T Consensus 247 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~-----------~~~~~~~~~~ 315 (361)
T d1m32a_ 247 FAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDP-----------QYRFSEFYRR 315 (361)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCT-----------TCCHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEEEEECCCCC-----------CCCHHHHHHH
Confidence 677776555444444444444444444444333333211 11111 223344332211 1113578899
Q ss_pred HHHCCeEecccC---CcceEEec--CCcHHHHHHHHHHHHHHH
Q 011959 434 MLEEGVYFAPSQ---FEAGFTSL--AHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 434 l~~~Gv~v~~~~---~~~~~~~~--~~t~e~i~~~l~~l~~~~ 471 (474)
|.++|+.+.++. .+.+|++. ..+++||++++++|++++
T Consensus 316 l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 316 LKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp HHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 999999987643 33568863 469999999999999875
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.63 E-value=7.1e-15 Score=146.65 Aligned_cols=303 Identities=12% Similarity=0.014 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHh-HhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCC
Q 011959 139 LLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLA-RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDS 214 (474)
Q Consensus 139 ~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~a-r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~ 214 (474)
.++.++.++++++++ ......++++|+++...++.++ |....+.++|+....-|.....++...|.....+.. +.
T Consensus 94 ~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~- 172 (445)
T d3bc8a1 94 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLE- 172 (445)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEE-
T ss_pred HHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeecc-
Confidence 456678888888775 3457888898887666655544 334444455555666688777777776664322110 00
Q ss_pred CCCCCCCCCceEEccCCCHHHHHHHHhcC-CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-
Q 011959 215 PGVPKGATYETLTAPFNDVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 292 (474)
Q Consensus 215 ~g~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~- 292 (474)
.+...+ |+++|++.+++. .+++++|++..+++.+|.+.+ +++|.++|++||++||+|++|.++
T Consensus 173 --------~~~~~i---d~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~ 237 (445)
T d3bc8a1 173 --------GDELRT---DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQS 237 (445)
T ss_dssp --------TTEEEC---CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred --------Cccccc---CHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh----HHHHHHHHHHhCCcEEEEccchhhh
Confidence 011112 899999999763 245888888888888899988 999999999999999999999643
Q ss_pred c-cCC--CccccccCCCCcee--ehhhhcCCCcceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC
Q 011959 293 R-LAY--GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366 (474)
Q Consensus 293 r-~g~--~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 366 (474)
. ... .+....- ..|++ +..|.++++...|+++.+ .++.+.+.. .+.+.. +........+++..+..
T Consensus 238 ~~~~~~~~~~~~~~--~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~g~ 309 (445)
T d3bc8a1 238 SKCMHLIQQGARVG--RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPGRA---SASPSLDVLITLLSLGC 309 (445)
T ss_dssp HHHHHHHHHHHHHS--CCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCSCB---CSHHHHHHHHHHHHHHH
T ss_pred hhccccchhccCcC--CcceEEecCccccccCCCCceeeeCChHHHHHHHH---HHhhcc---cCcchHHHHHHHHHHhh
Confidence 2 111 1111111 24555 567999876667777554 556665542 122212 22222223333333322
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHhhhcCCe-eEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEec
Q 011959 367 ---PGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 442 (474)
Q Consensus 367 ---~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~ 442 (474)
....++..++.+++++.|.++...++.. ...+.......+.+..... ........+...|.+.||...
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~--------~~~~~~~~l~~~L~~~gI~~~ 381 (445)
T d3bc8a1 310 SGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDG--------HHDKAVTQLGSMLFTRQVSGA 381 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSS--------SSSCHHHHHHHHHHHTTCCSC
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccc--------cCCCCHHHHHHHHHHcCCCcc
Confidence 4556667777888899998876555422 2233333343444322110 011223456777888876321
Q ss_pred c----c-------------C-------CcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 443 P----S-------------Q-------FEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 443 ~----~-------------~-------~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
. . + ...+++ +...|+||||.++++|++++++
T Consensus 382 ~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~ 438 (445)
T d3bc8a1 382 RAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI 438 (445)
T ss_dssp EEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHH
Confidence 1 0 0 011344 3567999999999999999875
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=1.6e-14 Score=141.00 Aligned_cols=277 Identities=10% Similarity=0.072 Sum_probs=162.6
Q ss_pred CCeEEEeCCHHHHHHHHHHHh-HhhcCCcEEEEEeCCCCCCchhHHHh-cCCCCccCCC-CCCCCCCCCCCCceEEccCC
Q 011959 155 IEMVRFVNSGTEACMGVLRLA-RAFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLGL-PDSPGVPKGATYETLTAPFN 231 (474)
Q Consensus 155 ~~~v~~~~sGseA~~~al~~a-r~~~~~~~ii~~~~~yhg~~~~~~~~-~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ 231 (474)
.+.++|+.|||++++++++.. ....+++++++.+.++++........ .+........ +.... .
T Consensus 57 ~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 122 (382)
T d2bkwa1 57 SQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGES--------------V 122 (382)
T ss_dssp CEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSC--------------C
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhccccccccccccccCCCCc--------------c
Confidence 567999999999999999843 22345678888887776654333322 2322211110 11111 1
Q ss_pred CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC--CEEEEeccccCcccCCCccccccCCCCce
Q 011959 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEVMTGFRLAYGGAQEYFGVTPDL 309 (474)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g--~llI~DEv~~g~r~g~~~~~~~~g~~pdi 309 (474)
+.+.+++.+... +++.+++..+.+++|...+ ++.+.++|++|+ +++++|-+++ + .......+.+| .|+
T Consensus 123 ~~~~~~~~~~~~--~~~~v~~~~~~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~qs-~-g~~pid~~~~g--iD~ 192 (382)
T d2bkwa1 123 PLELITEKLSQN--SYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-I-GCEEFEFDEWG--VDF 192 (382)
T ss_dssp CHHHHHHHHHHS--CCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-T-TTSCCCTTTTT--CSE
T ss_pred chhHHHHHhhhc--cchheeeeecccccccccc----chhhhhhccccccceeeeeecccc-c-ccccccccccC--eeE
Confidence 678888777653 5678888888888999999 888999998875 9999999996 1 01122223333 466
Q ss_pred ee--hhhhcCCCcceEEEEecHHHHHhhcCCC------Cc-----------------ccccCCCCChHHHHHHHHHHHHh
Q 011959 310 TT--LGKIIGGGLPVGAYGGRRDIMEMVAPAG------PM-----------------YQAGTLSGNPLAMTAGIHTLKRL 364 (474)
Q Consensus 310 ~t--~sK~l~~G~~iG~~~~~~~i~~~~~~~~------~~-----------------~~~~t~~~~~~~~aaa~aal~~~ 364 (474)
++ -.|+++|..-+|+++.++++++.+.+.. .. .....++.+.....+..++|+.+
T Consensus 193 ~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~ 272 (382)
T d2bkwa1 193 ALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEI 272 (382)
T ss_dssp EEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred EeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHH
Confidence 64 5599965445999999999887664310 00 00112234555667777889887
Q ss_pred cCCC---HHHHHHHHHHHHHHHHHHHhhhcCCeeEEe--eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCe
Q 011959 365 KEPG---TYEYLNKITGELTQGIIDAGKKAGHAICGG--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV 439 (474)
Q Consensus 365 ~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 439 (474)
.++. ..++.+++.+++++.+.+......+..... ....+..+.+ ++. ..+.+.|.++||
T Consensus 273 ~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~-------------~~~---~~~~~~L~~~gi 336 (382)
T d2bkwa1 273 LEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYV-------------ADP---PDVIAFLKSHGV 336 (382)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEEC-------------SCH---HHHHHHHHHTTE
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcC-------------CCH---HHHHHHHHHCCe
Confidence 6533 334444555566665543211111000000 0011122222 222 456778889999
Q ss_pred EecccCC-----cceEEe---cCCcHHHHHHHHHHHHHHH
Q 011959 440 YFAPSQF-----EAGFTS---LAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 440 ~v~~~~~-----~~~~~~---~~~t~e~i~~~l~~l~~~~ 471 (474)
.+..+.. ..+|++ ...++++++.+++.|+.+.
T Consensus 337 ~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~ 376 (382)
T d2bkwa1 337 VIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIK 376 (382)
T ss_dssp ECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred EEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence 9987632 246775 2345677666666665443
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.59 E-value=1.8e-14 Score=140.30 Aligned_cols=311 Identities=15% Similarity=0.107 Sum_probs=177.0
Q ss_pred CHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCC
Q 011959 117 DDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg 193 (474)
+++|++|+.... ..+.+ ...+...+..+.|++.+. +...|+|+.|||+++++++.. ....++++++....+++
T Consensus 30 ~~~Vl~am~~~~--~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~--~~~~~~~~~~~~~~~~~ 105 (377)
T d1vjoa_ 30 HPSVLQAMNVSP--VGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIAN--AVEPGDVVLIGVAGYFG 105 (377)
T ss_dssp CHHHHHHHSSCC--CCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHH--HCCTTCEEEEEESSHHH
T ss_pred CHHHHHHhCcCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHh--ccccccccceeeechhh
Confidence 677777653211 11111 123556677777777765 345788889999999999985 34556677777666554
Q ss_pred CchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC---CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHH
Q 011959 194 HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN---DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (474)
Q Consensus 194 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~---d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (474)
............... .+..+.+ +.+..+...... ++..+.+..+.+.+|.+.| ++
T Consensus 106 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~tg~~~~----i~ 163 (377)
T d1vjoa_ 106 NRLVDMAGRYGADVR----------------TISKPWGEVFSLEELRTALETH--RPAILALVHAETSTGARQP----LE 163 (377)
T ss_dssp HHHHHHHHHTTCEEE----------------EEECCTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CT
T ss_pred hhhhhhhhhhccccc----------------ccccCCCCcccchhhhhhhhcC--cceeeeeeeeeccceeeec----hh
Confidence 433332222211100 1111111 344444444332 5667777778888999999 88
Q ss_pred HHHHHHHHhCCEEEEecccc-CcccCCCccccccCCCCceee--hhhhcCCCcceEEEEecHHHHHhhcCCCCcc-----
Q 011959 271 AIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY----- 342 (474)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~----- 342 (474)
++.++|+++|+++++|.+++ |. .....+. ...|+++ ..|.++++--+|++..+++.++.........
T Consensus 164 ~i~~~~~~~g~~~~vDa~~~~g~---~~~~~~~--~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (377)
T d1vjoa_ 164 GVGELCREFGTLLLVDTVTSLGG---VPIFLDA--WGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYL 238 (377)
T ss_dssp THHHHHHHHTCEEEEECTTTTTT---SCCCTTT--TTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTT
T ss_pred hhhhhhhhccceEEEecchhhhh---hhhcccc--cccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceee
Confidence 89999999999999999995 21 1122233 3446654 4577765555788888988887665321100
Q ss_pred -----------cccCCC-CChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEE
Q 011959 343 -----------QAGTLS-GNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (474)
Q Consensus 343 -----------~~~t~~-~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (474)
...+.. .+...+.+..++++.+.+ +...++.+++.+++++.|.+...........+. ..++.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs-~~v~~~~ 317 (377)
T d1vjoa_ 239 DMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRL-PTLTTVC 317 (377)
T ss_dssp CHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBC-SSEEEEE
T ss_pred ccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceeecChHhcC-CeEEEEE
Confidence 011112 223333344444444433 344555556666666666654322111111111 2222333
Q ss_pred EecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC----CcceEEec---CCcHHHHHHHHHHHHHHHh
Q 011959 408 FTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSL---AHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~~~~---~~t~e~i~~~l~~l~~~~~ 472 (474)
+.+ .....++...|+ ++||.+..+. ...+|++. ..|+||||+++++|+++++
T Consensus 318 ~p~-------------~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 318 IPD-------------GVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp CCT-------------TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred CCC-------------CCCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 321 112356777776 4599886642 23478863 3579999999999999875
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.59 E-value=1.2e-13 Score=134.32 Aligned_cols=309 Identities=14% Similarity=0.063 Sum_probs=178.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCch
Q 011959 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (474)
.++-++++.+.++.+.... -+...+|.+++++++ +.+.+++++|||.|+..|++.. ....+++||+...+|+....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~--G~~v~~~E~~la~~~-g~~~ai~~~sgt~Al~~al~al-~~~~gdeVi~~~~~~~~~~~ 86 (376)
T d1mdoa_ 11 GAEELAAVKTVLDSGWITT--GPKNQELEAAFCRLT-GNQYAVAVSSATAGMHIALMAL-GIGEGDEVITPSMTWVSTLN 86 (376)
T ss_dssp CHHHHHHHHHHHHHTCCSS--SHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCHHHHH
T ss_pred CHHHHHHHHHHHhcCCCcC--CHHHHHHHHHHHHHH-CcCeEEEeCCHHHHHHHHHHHh-CCCCCCEEEEeccccccccc
Confidence 3566788888888763322 344567777777777 6789999999999999999842 24456778887766666443
Q ss_pred hHHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHH
Q 011959 197 PFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 275 (474)
Q Consensus 197 ~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l 275 (474)
++...|..+..... +.... -|+++|++.+.. ++++|++.... |...+ +++|.++
T Consensus 87 -ai~~~g~~pv~~d~~~~~~~--------------~d~~~l~~~i~~---~tkaIi~~h~~---G~~~~----~~~i~~i 141 (376)
T d1mdoa_ 87 -MIVLLGANPVMVDVDRDTLM--------------VTPEHIEAAITP---QTKAIIPVHYA---GAPAD----LDAIYAL 141 (376)
T ss_dssp -HHHHTTCEEEEECBCTTTCC--------------BCHHHHHHHCCT---TEEEECCBCGG---GCCCC----HHHHHHH
T ss_pred -chhccccceeeecccccccC--------------CCHHHHHHhcCC---CCeEEEEeCCC---CCccc----hhHHHHH
Confidence 34444432211111 11111 189999999873 57888876544 55556 8999999
Q ss_pred HHHhCCEEEEecccc-Cccc-CCCccccccCCCCceeeh--hhhcCCCcceEEEEec-HHHHHhhcC---CCC-------
Q 011959 276 TKENGALLIFDEVMT-GFRL-AYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGR-RDIMEMVAP---AGP------- 340 (474)
Q Consensus 276 ~~~~g~llI~DEv~~-g~r~-g~~~~~~~~g~~pdi~t~--sK~l~~G~~iG~~~~~-~~i~~~~~~---~~~------- 340 (474)
|++||++||.|.+|+ |... +.. ...+|. .+.+| +|.+++|- .|.++.+ +++.+.++. .+.
T Consensus 142 ~~~~~i~vIeD~a~a~g~~~~~~~--~g~~g~--~~~Sf~~~K~l~~g~-GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~ 216 (376)
T d1mdoa_ 142 GERYGIPVIEDAAHATGTSYKGRH--IGARGT--AIFSFHAIKNITCAE-GGIVVTDNPQFADKLRSLKFHGLGVDAWDR 216 (376)
T ss_dssp HHHHTCCBCEECTTCTTCEETTEE--TTSSSE--EEEECCTTSSSCSSS-CEEEEESCHHHHHHHHHHTBTTEECC----
T ss_pred HHhcCceEEeccchhccCeeCCee--cccccC--ccccCCCcCCCCCCC-CCEEEEechhHHHHHHhhcccCCccccccc
Confidence 999999999999995 2111 110 011121 23333 58887542 4666554 455554431 110
Q ss_pred -----------cccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc-C-CeeEEeeeceeEEEE
Q 011959 341 -----------MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-G-HAICGGYISGMFGFF 407 (474)
Q Consensus 341 -----------~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~~v~~~g~~~~i~ 407 (474)
...+..+..+.+.++.+...|+.+ ++..++.+++.+++.+.|.++.... . ........-..+.+.
T Consensus 217 ~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~--~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (376)
T d1mdoa_ 217 QSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIR 294 (376)
T ss_dssp -------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEE
T ss_pred ccccccccccchhcccccccchhhhhhhhhhhhhh--hHHHHHHhhhhhhhhhhcccccccccccccccccccccccccc
Confidence 001223345567777766666644 4566666777777777776542110 0 000011101111111
Q ss_pred EecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-------------------------cceEEe--cCCcHHHH
Q 011959 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------------------------EAGFTS--LAHSSDDI 460 (474)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~~~--~~~t~e~i 460 (474)
+... ......+++.+.|.++||-++.... ..++++ ...|++|+
T Consensus 295 ~~~~----------~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei 364 (376)
T d1mdoa_ 295 VDEA----------RCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDF 364 (376)
T ss_dssp CCHH----------HHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHH
T ss_pred cccc----------cchhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHH
Confidence 1100 0000124688999999997653211 013443 35599999
Q ss_pred HHHHHHHHHHH
Q 011959 461 QHTITAAEKVL 471 (474)
Q Consensus 461 ~~~l~~l~~~~ 471 (474)
+++++.|++++
T Consensus 365 ~~I~~~i~~i~ 375 (376)
T d1mdoa_ 365 DRVITALHQIA 375 (376)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.57 E-value=4.7e-13 Score=133.46 Aligned_cols=303 Identities=11% Similarity=0.006 Sum_probs=182.0
Q ss_pred CHHHHHHHHHHHhhCCCC----------CeEEEeCCHHHHHHHHHHHhHhhc----------------CCcEEEEEeCCC
Q 011959 138 CLLENVLAEMVISAVPSI----------EMVRFVNSGTEACMGVLRLARAFT----------------GRERIIKFEGCY 191 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~----------~~v~~~~sGseA~~~al~~ar~~~----------------~~~~ii~~~~~y 191 (474)
+..+.++.+++++.++-+ ..-++++|||+||..++..||... .++-+++....-
T Consensus 112 t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~ 191 (476)
T d1js3a_ 112 TELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA 191 (476)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccc
Confidence 567888999999988521 246899999999999999997531 023466666667
Q ss_pred CCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhc---CCCCeEEEEEccccCCCCcccCCHHH
Q 011959 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDF 268 (474)
Q Consensus 192 hg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (474)
|-+..-++...|.++..++......+ |+++|++.|++ .+..+.+|+..-...++|.+-|
T Consensus 192 H~Si~ka~~~lGl~~~~v~~d~~~~m--------------d~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp---- 253 (476)
T d1js3a_ 192 HSSVERAGLIGGVKLKAIPSDGKFAM--------------RASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN---- 253 (476)
T ss_dssp CHHHHHHHHHHTCEEEEECCCTTSCC--------------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----
T ss_pred cHHHHHHHHhcCceEEEeccCCCCCc--------------CHHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc----
Confidence 77777777767765443322111111 89999999875 2234556666666677899999
Q ss_pred HHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCC-CCceee--hhhhcCCCcceEEEEecHH-HH-HhhcCCCC--
Q 011959 269 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD-IM-EMVAPAGP-- 340 (474)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~t--~sK~l~~G~~iG~~~~~~~-i~-~~~~~~~~-- 340 (474)
+++|.++|++||++|++|-+|.|+ ..-........|+ ..|.+| ..|.+...+..|+++.++. .. ..+.....
T Consensus 254 l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~ 333 (476)
T d1js3a_ 254 LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYL 333 (476)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------
T ss_pred HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhh
Confidence 999999999999999999999887 3322111122244 257665 5799887778999877753 22 22211000
Q ss_pred ------------cccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCe-eEEeeeceeE
Q 011959 341 ------------MYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMF 404 (474)
Q Consensus 341 ------------~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~v~~~g~~~ 404 (474)
....+.-++-+........+++.+.. .+.+++..++.+++.+.|++. +.. .-.+..-.++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~----~~fel~~~p~l~iV 409 (476)
T d1js3a_ 334 KHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD----PRFEVCAEVTLGLV 409 (476)
T ss_dssp ------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----TTEEECSCCCSSEE
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC----CCeEEECCCceEEE
Confidence 00011111112222233344554433 445555556666666666553 211 1111122222
Q ss_pred EEEEecCCCcCcccccccchHHHHHHHHHHHHCC-eEeccc---CCcceEEe---cCCcHHHHHHHHHHHHHHHhhC
Q 011959 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG-VYFAPS---QFEAGFTS---LAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-v~v~~~---~~~~~~~~---~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
.|.+. +......++.+.+.+.| +++.+. +...+|++ ...|++||+.+++.|++..+++
T Consensus 410 ~Fr~~------------~~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~l 474 (476)
T d1js3a_ 410 CFRLK------------GSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (476)
T ss_dssp EEEES------------SCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEcc------------CChHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33332 22334467778888887 445443 22245553 4568999999999999987653
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.57 E-value=4.7e-14 Score=137.88 Aligned_cols=315 Identities=13% Similarity=0.112 Sum_probs=174.7
Q ss_pred CHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCC
Q 011959 117 DDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg 193 (474)
+|+|++|+.+.. ..+.+ -..+...+..+.|++.+. +.+.++|+.|||+++++++.. ...+++++++...+.++
T Consensus 29 ~~~V~~Am~~~~--~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~--l~~~~~~vl~~~~g~~~ 104 (388)
T d2ch1a1 29 SKRVLTAMTNTV--LSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSN--LLEEGDRVLIAVNGIWA 104 (388)
T ss_dssp CHHHHHHTTSCC--CCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHH--HCCTTCEEEEEESSHHH
T ss_pred CHHHHHHhCcCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHH--hcccccccccccccccc
Confidence 688877753321 11111 123455667777777765 344567778999999999985 23456677776665555
Q ss_pred CchhHHHhc-CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHH
Q 011959 194 HADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (474)
Q Consensus 194 ~~~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (474)
......... +........+.... .+.+..++.+... +++.+.+..+.+.+|.+.+ ++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~--~~~~v~~~~~~t~tG~~~~----~~~i 164 (388)
T d2ch1a1 105 ERAVEMSERYGADVRTIEGPPDRP--------------FSLETLARAIELH--QPKCLFLTHGDSSSGLLQP----LEGV 164 (388)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTSC--------------CCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTH
T ss_pred ccchhhhhhhcccccccccccccc--------------cchhhhhhhhccC--Ccceeeeeecccccccccc----hhhh
Confidence 433322221 22111111111111 1566666655543 5677778778888999999 7779
Q ss_pred HHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehh--hhcCCCcceEEEEecHHHHHhhcCCCCc---------
Q 011959 273 RRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRDIMEMVAPAGPM--------- 341 (474)
Q Consensus 273 ~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~s--K~l~~G~~iG~~~~~~~i~~~~~~~~~~--------- 341 (474)
.++|+++|+++++|-+++-. +.....+ ....|++++| |++++.--+|.+..+++..+........
T Consensus 165 ~~~~~~~~~~~~vD~~ss~g--~~pid~~--~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T d2ch1a1 165 GQICHQHDCLLIVDAVASLC--GVPFYMD--KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLL 240 (388)
T ss_dssp HHHHHHTTCEEEEECTTTBT--TBCCCTT--TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHH
T ss_pred cchhccccceeeeeeeeccc--ccccchh--ccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccccccccch
Confidence 99999999999999999611 1122222 3345777655 6676434588888888877655421100
Q ss_pred ----------cccc-CCCCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHHHHHHhhhcCCeeEEe-eeceeEEE
Q 011959 342 ----------YQAG-TLSGNPLAMTAGIHTLKRLKEPGTYE---YLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGF 406 (474)
Q Consensus 342 ----------~~~~-t~~~~~~~~aaa~aal~~~~~~~~~~---~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i 406 (474)
.... ....+.....+..++++.+....... +.++....++..+....... ...+-. ....+..+
T Consensus 241 ~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~rs~~v~~~ 319 (388)
T d2ch1a1 241 LLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDI-FVKDPRHRLPTVTGI 319 (388)
T ss_dssp HHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCB-SSCSGGGBCTTEEEE
T ss_pred hhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhccccc-ccCCHHHhCCeEEEE
Confidence 0111 22334455556666666654433322 22222233333333321111 111111 11223344
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEe-c--CCcHHHHHHHHHHHHHHHhh
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTS-L--AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~-~--~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+.+ .....++...|+++ ||.+.++. ...+|++ + ..|+|+|+.++++|+++++.
T Consensus 320 ~~p~-------------g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~ 381 (388)
T d2ch1a1 320 MIPK-------------GVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 381 (388)
T ss_dssp ECCT-------------TCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred ECCC-------------CCCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 4422 12235677777654 99888753 2347886 4 34799999999999999975
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.56 E-value=1.3e-13 Score=132.32 Aligned_cols=311 Identities=19% Similarity=0.134 Sum_probs=180.6
Q ss_pred CHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCC
Q 011959 117 DDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~ 194 (474)
+|+|++|+.+.. ..+.+ ...+...+..+.|.+.+. ..+.++|+.|||+++++++.. ...+++++++...+++|.
T Consensus 12 ~~~V~~am~~~~--~~hr~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~n--l~~~g~~vlv~~~G~f~~ 87 (348)
T d1iuga_ 12 HPKALEALARPQ--LHHRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKN--LFAPGERVLVPVYGKFSE 87 (348)
T ss_dssp CHHHHHHHHSCC--CCTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHH--HCCTTCEEEEEECSHHHH
T ss_pred CHHHHHHhcCCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHh--cccccccceeecchHHHH
Confidence 688888765432 11111 112345566666777665 346688899999999999984 344567888888776664
Q ss_pred chhHHHh-cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHH
Q 011959 195 ADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 273 (474)
Q Consensus 195 ~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~ 273 (474)
....... .+..+. ....++.+...+++ +.. .++..|++..+.+.+|.+.| +++|.
T Consensus 88 ~~~~~a~~~~~~~~-----------------~~~~~~g~~~~~~~-~~~--~~~~~v~~~h~eTstG~~~~----i~~i~ 143 (348)
T d1iuga_ 88 RFYEIALEAGLVVE-----------------RLDYPYGDTPRPED-VAK--EGYAGLLLVHSETSTGALAD----LPALA 143 (348)
T ss_dssp HHHHHHHHTTCEEE-----------------EEECCTTCCCCTTT-SCC--SSCSEEEEESEETTTTEECC----HHHHH
T ss_pred HHHHHHHhcCcccc-----------------cccccCCCcccccc-ccc--cCCCeeEEEecchhhhhhcc----HHHHH
Confidence 3333222 222221 12222221111111 111 25567777777777899999 99999
Q ss_pred HHHHHhC--CEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcc-------
Q 011959 274 RITKENG--ALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY------- 342 (474)
Q Consensus 274 ~l~~~~g--~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~------- 342 (474)
++|++|+ +++++|-+++ + .......+.++ .|++ +-.|++++--.+|.++.+++.++.+.+....+
T Consensus 144 ~~~~~~~~~~l~~vDavss-~-g~~~i~~d~~~--iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~dl~~~~~ 219 (348)
T d1iuga_ 144 RAFKEKNPEGLVGADMVTS-L-LVGEVALEAMG--VDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELK 219 (348)
T ss_dssp HHHHHHCTTCEEEEECTTT-B-TTBCCCSGGGT--CSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHH
T ss_pred HHHHhhhccceeechhhhc-c-ccccccccccc--CCEEEeccccceecCCceeeeeechHHHhhhcccccccchhhhhh
Confidence 9999985 7899999885 1 11123334444 4655 45699963223899999999988775421111
Q ss_pred ---cccC-CCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeee-ceeEEEEEecCCCcCcc
Q 011959 343 ---QAGT-LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI-SGMFGFFFTEGPVYNFE 417 (474)
Q Consensus 343 ---~~~t-~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~-g~~~~i~~~~~~~~~~~ 417 (474)
.+.+ ++.+...+.+..++|+.+.+. ..++. ++.+...+.+.+.....++....... ..+..+.+
T Consensus 220 ~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~--------- 288 (348)
T d1iuga_ 220 AQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHL-ALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYL--------- 288 (348)
T ss_dssp HHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHH-HHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEEC---------
T ss_pred hhccCcccccccchHHHHHHHHHHHHHHH-HhHHH-HHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEEC---------
Confidence 1122 333444566666888876542 33332 33333334444443333322110000 11222222
Q ss_pred cccccchHHHHHHHHHHHHCCeEecccCC----cceEEe-c-CCcHHHHHHHHHHHHHHHhhC
Q 011959 418 DAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTS-L-AHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~~~~-~-~~t~e~i~~~l~~l~~~~~~~ 474 (474)
|+.....++.+.|.++|+.+.++.. ..+|+. + ..+++|++.+++.|+++++++
T Consensus 289 ----P~g~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 289 ----PEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp ----CTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3333346788889999999887642 246884 2 568999999999999999874
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.56 E-value=2.5e-14 Score=143.36 Aligned_cols=321 Identities=11% Similarity=-0.036 Sum_probs=171.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchh-HHHhcCCCCccCCCC-CC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP-FLVKAGSGVATLGLP-DS 214 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~-~~~~~g~~~~~~~~~-~~ 214 (474)
+.....++.+.+++.+ +.++++|+++||+++..|+.. +..++++.|+.+...|.+... ...+.+.+....... ..
T Consensus 64 ~~~~i~eae~~~A~~~-ga~~a~f~~~Gtt~~n~a~i~--a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~ 140 (462)
T d1c4ka2 64 HEGPAVAAEKHAARVY-NADKTYFVLGGSSNANNTVTS--ALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNP 140 (462)
T ss_dssp TBTHHHHHHHHHHHHT-TCSEEEEESSHHHHHHHHHHH--HHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECT
T ss_pred CCHHHHHHHHHHHHHh-CCCeEEEECCchHHHHHHHHH--HhcCCCCeEEecccchHHHHHHHHHHhcCCceeeeccccc
Confidence 4445567777777777 688999999998876666543 456666667777777776543 333333322111000 01
Q ss_pred CCCCCCCCCceEEcc--CCCHHHHHHHHhc------CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011959 215 PGVPKGATYETLTAP--FNDVSALENLFEN------NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (474)
Q Consensus 215 ~g~~~~~~~~~~~~~--~~d~~~le~~l~~------~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (474)
.+. ..... --+.+.+++.+.+ ...++..+++..+++..|.+.+ +++|.++|++||++|++|
T Consensus 141 ~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d----l~~I~~ia~~~g~~l~vD 209 (462)
T d1c4ka2 141 YGF-------IGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN----AHEVVKRIGHLCDYIEFD 209 (462)
T ss_dssp TCC-------EEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC----HHHHHHHHGGGBSEEEEE
T ss_pred ccc-------cCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh----HHHHHHHHHHcCCEEEEe
Confidence 111 01110 0023333333221 1123455666666677899999 999999999999999999
Q ss_pred cccc-CcccCC--CccccccC----C--CCcee--ehhhhcCCCcceEEEEecHHHHHhhcCC-------CCcccccCCC
Q 011959 287 EVMT-GFRLAY--GGAQEYFG----V--TPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA-------GPMYQAGTLS 348 (474)
Q Consensus 287 Ev~~-g~r~g~--~~~~~~~g----~--~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~-------~~~~~~~t~~ 348 (474)
|+|. |+.... .......| . ..|++ ++.|.+++.-..+.+..+.+.+...... .......|.+
T Consensus 210 ~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~s 289 (462)
T d1c4ka2 210 SAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTS 289 (462)
T ss_dssp CTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSS
T ss_pred chhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHhhhhcccCC
Confidence 9994 332111 11111111 1 23665 5789998532233444443322111100 0111233456
Q ss_pred CChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcC--CeeEEeee-----------------------
Q 011959 349 GNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG--HAICGGYI----------------------- 400 (474)
Q Consensus 349 ~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~v~~~----------------------- 400 (474)
++...++...++...+.. .++.++..++.+++++++.++..... ....+.+.
T Consensus 290 p~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (462)
T d1c4ka2 290 PFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGA 369 (462)
T ss_dssp CCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTC
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcc
Confidence 666666666666665543 45677778888899998887632110 00000000
Q ss_pred -----------cee-----EEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHH
Q 011959 401 -----------SGM-----FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQH 462 (474)
Q Consensus 401 -----------g~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~ 462 (474)
..+ +.+....-.... .... ........+.+.|.++||.+...+...+++ +..+|++++|+
T Consensus 370 ~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~-g~~~-~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~ 447 (462)
T d1c4ka2 370 KWHAYEGYGDNQYYVDPNKFMLTTPGINPET-GDYE-DFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNN 447 (462)
T ss_dssp TTTCCTTCCTTCEEECTTEEEEECSSEETTT-TEEC-SSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHH
T ss_pred hhccccccCccceecccceeEEecCCccccc-cchh-hcCCcHHHHHHHHHHcCCeeeccCCCeEEEEecCCCCHHHHHH
Confidence 000 111100000000 0000 000113466788889999876665555655 56779999999
Q ss_pred HHHHHHHHHhh
Q 011959 463 TITAAEKVLRQ 473 (474)
Q Consensus 463 ~l~~l~~~~~~ 473 (474)
++++|+++.+.
T Consensus 448 li~aL~ei~r~ 458 (462)
T d1c4ka2 448 LITQLLQLQRL 458 (462)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987653
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.56 E-value=2e-13 Score=133.07 Aligned_cols=311 Identities=13% Similarity=0.081 Sum_probs=182.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCch
Q 011959 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (474)
..+-.+++.+.++.+..+...-+...++.+++++++ +.+.+++++|||.|+++|++.. ....+++||+..-+|.. +.
T Consensus 12 ~~~~~~~~~~~l~~g~~~~~~g~~v~~fE~~~a~~~-g~~~~v~~~SGt~Al~lal~~l-~~~~gdeVi~p~~t~~a-~~ 88 (384)
T d1b9ha_ 12 DDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHH-GAAHALAVTNGTHALELALQVM-GVGPGTEVIVPAFTFIS-SS 88 (384)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHT-TCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCTH-HH
T ss_pred CHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHH-CcCeEEEeCCHHHHHHHHHHHc-CCCCCCEEEEecccccc-cc
Confidence 456688899999887432222344567778888877 7789999999999999999842 34556788877666654 44
Q ss_pred hHHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHH
Q 011959 197 PFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 275 (474)
Q Consensus 197 ~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l 275 (474)
.++...|..+.-... +.... -|++.+++.+. +++++|++....+. ... +.++.++
T Consensus 89 ~ai~~~g~~p~~~d~~~~~~~--------------~d~~~~~~~i~---~~tk~i~~~~~~g~---~~d----~~~i~~~ 144 (384)
T d1b9ha_ 89 QAAQRLGAVTVPVDVDAATYN--------------LDPEAVAAAVT---PRTKVIMPVHMAGL---MAD----MDALAKI 144 (384)
T ss_dssp HHHHHTTCEEEEECBCTTTCC--------------BCHHHHHHHCC---TTEEEECCBCGGGC---CCC----HHHHHHH
T ss_pred ccccccccccccccccccccc--------------cchhhhccccc---cccccccccccccc---ccc----cccchhh
Confidence 444444442221111 11111 17899988875 36888877665543 344 8899999
Q ss_pred HHHhCCEEEEecccc-Cc-ccCCCccccccCCCCcee--eh--hhhcCCCcceEEEEec-HHHHHhhcC---CC------
Q 011959 276 TKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TL--GKIIGGGLPVGAYGGR-RDIMEMVAP---AG------ 339 (474)
Q Consensus 276 ~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~--t~--sK~l~~G~~iG~~~~~-~~i~~~~~~---~~------ 339 (474)
|++|+++||.|.+|+ |- ..|. ..|-.-|+. +| +|.+++|- .|+++.+ +++.+.++. .+
T Consensus 145 ~~~~~i~lieD~a~a~ga~~~g~-----~~g~~g~~~~~Sf~~~K~i~~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~ 218 (384)
T d1b9ha_ 145 SADTGVPLLQDAAHAHGARWQGK-----RVGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLRHSCGRPRD 218 (384)
T ss_dssp HHHHTCCBCEECTTCTTCEETTE-----EGGGSSSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHHTBTTCCTT
T ss_pred hhhhhhhhhhhhceecccccCCE-----ecCcccccceecccccccccccc-cchhhhhhHHHHHHHHHHHhcCCCCccc
Confidence 999999999999995 22 2121 122223443 33 68887542 5666554 455444321 00
Q ss_pred --C---cccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeE---EeeeceeEEEEEecC
Q 011959 340 --P---MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC---GGYISGMFGFFFTEG 411 (474)
Q Consensus 340 --~---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---v~~~g~~~~i~~~~~ 411 (474)
. ...+..+..+.+.++.++..|+.+ ++..++-+++.+++.+.|.++..-...... ......++.+.+..
T Consensus 219 ~~~~~~~~~G~n~rms~l~Aaig~~qL~~l--d~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~- 295 (384)
T d1b9ha_ 219 DRRYFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPG- 295 (384)
T ss_dssp CSSCCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTT-
T ss_pred cccccccccccccccccchhhhhhhhhhhc--ccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceecc-
Confidence 0 112233446677777777766544 345555666666666666543110000000 01111122222211
Q ss_pred CCcCcccccccchHHHHHHHHHHHHCCeEecccCC---------------------------------cceEEe--cCCc
Q 011959 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---------------------------------EAGFTS--LAHS 456 (474)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------------------~~~~~~--~~~t 456 (474)
......+.+.+.|.++||-+..... ..++++ ...|
T Consensus 296 ----------~~~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt 365 (384)
T d1b9ha_ 296 ----------LTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLA 365 (384)
T ss_dssp ----------CCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGS
T ss_pred ----------cccccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCC
Confidence 1223346789999999997653211 013444 3346
Q ss_pred -HHHHHHHHHHHHHHHhh
Q 011959 457 -SDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 457 -~e~i~~~l~~l~~~~~~ 473 (474)
++|++..++.|++++.+
T Consensus 366 ~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 366 GEPELHATAEIIADAVAR 383 (384)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 67999999999999865
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.50 E-value=1e-11 Score=120.38 Aligned_cols=319 Identities=15% Similarity=0.057 Sum_probs=175.7
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHH
Q 011959 121 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 200 (474)
Q Consensus 121 ~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~ 200 (474)
++++.+.++.+... ..-+...+|.+.+++.+ +.+.+++++|||.|+..|++.. ...++++||+..-+|.... .++.
T Consensus 4 ~~~~~~~l~~~~~~-~~G~~~~~fE~~~~~~~-~~~~~~~~~SgT~Al~lal~~l-~~~~gdeVi~p~~t~~a~~-~~~~ 79 (374)
T d1o69a_ 4 LKYIEEVFKSNYIA-PLGEFVNRFEQSVKDYS-KSENALALNSATAALHLALRVA-GVKQDDIVLASSFTFIASV-APIC 79 (374)
T ss_dssp HHHHHHHHHHTTTS-CTTHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCGGGT-HHHH
T ss_pred HHHHHHHHhcCCcC-CCCHHHHHHHHHHHHHH-CcCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEeCCcchHhhH-HHHh
Confidence 57788888876321 11234456666666666 7789999999999999999853 3455678888766665533 3333
Q ss_pred hcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC
Q 011959 201 KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280 (474)
Q Consensus 201 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g 280 (474)
..|..+.-.... +. ........+........++.+|++....|. ... +++|.++|+++|
T Consensus 80 ~~g~~pv~~Di~--~~------------~~~~~~~~~~~~~~~~~~~~aii~~~~~G~---~~d----~~~i~~~~~~~~ 138 (374)
T d1o69a_ 80 YLKAKPVFIDCD--ET------------YNIDVDLLKLAIKECEKKPKALILTHLYGN---AAK----MDEIVEICKEND 138 (374)
T ss_dssp HTTCEEEEECBC--TT------------SSBCHHHHHHHHHHCSSCCCEEEEECGGGC---CCC----HHHHHHHHHHTT
T ss_pred hccceeEecccc--cc------------cccccccccccchhcccccccccccccccc---hhh----hHHHHHHhhccC
Confidence 333321111100 00 000223333322222345667777665543 344 999999999999
Q ss_pred CEEEEecccc-Cc-ccCCCccccccCCCCceeeh----hhhcCCCcceEEEEe-cHHHHHhhcC---CCC--------cc
Q 011959 281 ALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTL----GKIIGGGLPVGAYGG-RRDIMEMVAP---AGP--------MY 342 (474)
Q Consensus 281 ~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~t~----sK~l~~G~~iG~~~~-~~~i~~~~~~---~~~--------~~ 342 (474)
++||.|-+|+ |. ..| ...|-.-|+.+| +|.+++|= .|+++. ++++++.++. .+. ..
T Consensus 139 i~vIED~a~a~g~~~~~-----~~~G~~gd~~~fSf~~~K~l~tge-GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~ 212 (374)
T d1o69a_ 139 IVLIEDAAEALGSFYKN-----KALGTFGEFGVYSYNGNKIITTSG-GGMLIGKNKEKIEKARFYSTQARENCLHYEHLD 212 (374)
T ss_dssp CEEEEECTTCTTCEETT-----EETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSS
T ss_pred cchhhhhhhhhcceECC-----eecCCCCceEEEeccCcccccccc-ceeehhhhHHHHHhhcccccccccccccccccc
Confidence 9999999995 22 222 122333466654 48887432 455544 5667665541 110 01
Q ss_pred cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCC--CcCc----
Q 011959 343 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP--VYNF---- 416 (474)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~--~~~~---- 416 (474)
.+..+..+.+.++.++..|+.+ +...++-+++.+++.+.|.+................+..+.+..+. ....
T Consensus 213 ~G~N~rm~ei~Aaig~~qL~~l--~~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 290 (374)
T d1o69a_ 213 YGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDI 290 (374)
T ss_dssp CCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEE
T ss_pred CCccccccchhhhhhHHHHhhh--hhhcchhHHHHHHHHhhccccccccccccCCCCChhheeeeecccccccccccccc
Confidence 2334557788888888877655 3455555666666666665432111111111111111122221110 0000
Q ss_pred --ccccccchHHHHHHHHHHHHCCeEecccCCc------------------------ceEEe--cCCcHHHHHHHHHHHH
Q 011959 417 --EDAKKSETTKFARFYRGMLEEGVYFAPSQFE------------------------AGFTS--LAHSSDDIQHTITAAE 468 (474)
Q Consensus 417 --~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~------------------------~~~~~--~~~t~e~i~~~l~~l~ 468 (474)
.............+.+.|.++||-+++...+ .+++| ...|++|++..++.|.
T Consensus 291 ~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~ 370 (374)
T d1o69a_ 291 NISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLIL 370 (374)
T ss_dssp ECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred ccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHH
Confidence 0000112234567889999999976543110 13444 3559999999999999
Q ss_pred HHHh
Q 011959 469 KVLR 472 (474)
Q Consensus 469 ~~~~ 472 (474)
++++
T Consensus 371 ~~lk 374 (374)
T d1o69a_ 371 KSIK 374 (374)
T ss_dssp HHHC
T ss_pred HHHC
Confidence 9874
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.50 E-value=1.3e-12 Score=125.58 Aligned_cols=215 Identities=16% Similarity=0.156 Sum_probs=148.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++....|.+.|+++. +.+..+.++||..|+..++.. ....++.||+.+..|+|....+-.... ..|
T Consensus 57 ~nPT~~~LE~~la~LE-g~~~a~~~~SGmaAi~~~l~~--l~~~Gd~vl~~~~~Yg~t~~l~~~~~~----------~~G 123 (392)
T d1gc0a_ 57 SNPTLNLLEARMASLE-GGEAGLALASGMGAITSTLWT--LLRPGDEVLLGNTLYGCTFAFLHHGIG----------EFG 123 (392)
T ss_dssp CCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEESSCCSHHHHHHHHTGG----------GGT
T ss_pred CChHHHHHHHHHHHHh-CCcceeehhhHHHHHHHHHHh--hccCCCeeecccccchhhhhhhhhhhc----------cCC
Confidence 4566677888888777 567888999999999999873 235578888888889885433221110 112
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CcccC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GFRLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~r~g 295 (474)
.++..++..|+++++++++ +++++|++|.+.|++..+.+ ++.|+++|+++|+++|+|..+. .+
T Consensus 124 ------i~~~~~d~~d~~~~~~ai~---~~t~lv~~Esp~NP~l~v~D----i~~i~~ia~~~g~~~vvDnT~atP~--- 187 (392)
T d1gc0a_ 124 ------VKLRHVDMADLQALEAAMT---PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTPY--- 187 (392)
T ss_dssp ------CEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHHH---
T ss_pred ------cccccCCccCHHHHHHhCC---CCCeEEEecccccceeeecc----hHHHHHHHHhcCCEEEEecCccCcc---
Confidence 2355666678999999987 37899999999999999999 9999999999999999999984 32
Q ss_pred CCccccccCCCCcee--ehhhhcCC-C-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
.+.-+..-.|++ +.+|-++| | .-.|.++++++.++.++.. ......-...+|..+...+..|+.+ +-..+
T Consensus 188 ---~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~-~~~~~~G~~~~p~da~ll~rgl~TL--~lRm~ 261 (392)
T d1gc0a_ 188 ---LQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ-GLKDMTGAVLSPHDAALLMRGIKTL--NLRMD 261 (392)
T ss_dssp ---HCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT-HHHHHTCCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred ---ccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHH-HHHHccCCcCChhhHHHHHhccccH--HHHHH
Confidence 111122234555 79999986 4 5678888898877654310 1111112245677777766666533 33455
Q ss_pred HHHHHHHHHHHHHHH
Q 011959 372 YLNKITGELTQGIID 386 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~ 386 (474)
+..++...+.+.|++
T Consensus 262 ~~~~nA~~lA~~L~~ 276 (392)
T d1gc0a_ 262 RHCANAQVLAEFLAR 276 (392)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 566667767666654
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.49 E-value=2.6e-12 Score=123.16 Aligned_cols=213 Identities=14% Similarity=0.165 Sum_probs=139.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++....|.++|+++- +.+.++.++||..|+.+.+. ....++.||..+..|-+ +...+...-. ..|
T Consensus 47 ~nPt~~~le~~la~LE-~~~~a~~fsSGMaAisall~---ll~~Gd~vv~~~~~Yg~-t~~l~~~~~~---------~~g 112 (380)
T d1ibja_ 47 GNPTRDALESLLAKLD-KADRAFCFTSGMAALSAVTH---LIKNGEEIVAGDDVYGG-SDRLLSQVVP---------RSG 112 (380)
T ss_dssp CCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHT---TSCTTCEEEEESSCCHH-HHHHHHHTSG---------GGT
T ss_pred CChHHHHHHHHHHHHc-CCceEEehhhHHHHHHHHHH---hhCCCCEEEEEeccccc-ccchhhhhhc---------ccc
Confidence 3555677888887776 56788999999999864332 44556777777666654 4333322110 012
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (474)
..+..+..+|.+.+++.++ +++++|++|.+.|+...+.+ +++|+++|++||+++|+|..+.+
T Consensus 113 ------i~~~~~d~~~~~~~~~ai~---~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vVDnT~at----- 174 (380)
T d1ibja_ 113 ------VVVKRVNTTKLDEVAAAIG---PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMS----- 174 (380)
T ss_dssp ------CEEEEECTTSHHHHHHHCC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC-----
T ss_pred ------ccccccCcchHHHHHHHhc---cCccEEEecccccccccccc----HHHHHHHHHHcCCeEEeeccccc-----
Confidence 2355566678999998886 37899999999999999999 99999999999999999999842
Q ss_pred CccccccCCCCcee--ehhhhcCC-C-cceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 297 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 297 ~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
+..+.-+....|++ +++|.++| | .-.|.++.+ +++.+.+.. .....--..+|..+...+..|+.+ +-..+
T Consensus 175 P~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~---~~~~~G~~l~p~~a~ll~rgl~Tl--~lRm~ 249 (380)
T d1ibja_ 175 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF---LQNSEGSGLAPFDCWLCLRGIKTM--ALRIE 249 (380)
T ss_dssp TTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHH---HHHHTTCBCCHHHHHHHHHHHTTH--HHHHH
T ss_pred cccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHh---hccccCCcCCHHHHHHHHhcchhh--hhhHH
Confidence 11222222334655 79999986 3 456666555 556666542 111111234677766666655433 33455
Q ss_pred HHHHHHHHHHHHHHH
Q 011959 372 YLNKITGELTQGIID 386 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~ 386 (474)
+..++...+.+.|++
T Consensus 250 ~~~~nA~~lA~~L~~ 264 (380)
T d1ibja_ 250 KQQENARKIAMYLSS 264 (380)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 666677777766654
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.49 E-value=4e-12 Score=122.39 Aligned_cols=215 Identities=18% Similarity=0.149 Sum_probs=142.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++....|.++|+++. +.+.++.++||..|+..++.. ....++.||..+..|.+.......... ..|
T Consensus 65 ~nPt~~~LE~~la~LE-gg~~a~~~sSGMaAi~~~l~~--l~~~Gd~iv~~~~~Yg~t~~l~~~~~~----------~~g 131 (398)
T d1qgna_ 65 GNPTTVVLEEKISALE-GAESTLLMASGMCASTVMLLA--LVPAGGHIVTTTDCYRKTRIFIETILP----------KMG 131 (398)
T ss_dssp CCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHH--HSCSSCEEEEETTSCHHHHHHHHHTGG----------GGT
T ss_pred CChHHHHHHHHHHHHh-CCceEEEecCcchHHHHHHhh--cccccccccccccccchhhhhhccccc----------ccc
Confidence 4667788888888877 567899999999999999883 234567888887778664332221110 011
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (474)
..+..+...+.+..++.+.. +++++|++|.+-|++..+.+ +++|.++|+++|+++|+|.....
T Consensus 132 ------i~~~~~~~~~~~~~~~~~~~--~~t~~v~~EspsNP~l~v~D----i~~ia~ia~~~g~~~vVDnT~at----- 194 (398)
T d1qgna_ 132 ------ITATVIDPADVGALELALNQ--KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFAT----- 194 (398)
T ss_dssp ------CEEEEECSSCHHHHHHHHHH--SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC-----
T ss_pred ------cccccccccchhhhhhhhcc--ccceEEEccCccccccccch----HHHHHHHHhhcCCEEEecceeec-----
Confidence 12344443455555543332 37899999999999988888 99999999999999999998842
Q ss_pred CccccccCCCCcee--ehhhhcCC-C-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 297 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 297 ~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
+..+.-+..-.|++ +++|.++| + .-.|.+.+++++++.++. .....--..+|..+...+..|+.+ +-..++
T Consensus 195 P~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~---~~~~~G~~l~p~~a~ll~rgl~TL--~lRm~~ 269 (398)
T d1qgna_ 195 PLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRN---LHHILGGALNPNAAYLIIRGMKTL--HLRVQQ 269 (398)
T ss_dssp TTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHGGGH--HHHHHH
T ss_pred cccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhh---hcccCCCcCCHHHHHHHHhcchHH--HHHHHH
Confidence 22222233334655 79999986 3 567778889888777652 111112245677766666555433 334556
Q ss_pred HHHHHHHHHHHHHH
Q 011959 373 LNKITGELTQGIID 386 (474)
Q Consensus 373 ~~~~~~~l~~~L~~ 386 (474)
..++...+.+.|++
T Consensus 270 ~~~nA~~lA~~L~~ 283 (398)
T d1qgna_ 270 QNSTALRMAEILEA 283 (398)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 66677777777654
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.47 E-value=9.9e-12 Score=119.42 Aligned_cols=216 Identities=13% Similarity=0.114 Sum_probs=146.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++....|.+.|+++. +.+..++++||..|+..++.. ....++.||+.+..|.+....+-.... ..|
T Consensus 61 ~nPT~~~LE~~la~LE-gg~~a~~~sSGmaAi~~~l~~--ll~~Gd~vi~~~~~Yg~t~~~~~~~l~----------~~G 127 (397)
T d1y4ia1 61 GNPTTDALEKKLAVLE-RGEAGLATASGISAITTTLLT--LCQQGDHIVSASAIYGCTHAFLSHSMP----------KFG 127 (397)
T ss_dssp SCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEESSSCHHHHHHHHTHHH----------HTT
T ss_pred CCHHHHHHHHHHHHHh-CCccceeehHHHHHHHHHHhh--ccCCCCeeeeecccccccchhhhcccC----------CCc
Confidence 4677788999998887 567888999999999999873 335578888888888774433221110 012
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~ 296 (474)
+ ++..+...|.+.+++.++ +++++|.+|.+-|+...+.+ +++|+++|+++|+++|+|.....
T Consensus 128 i------~~~~vd~~d~~~~~~~i~---~~Tklv~~Esp~NP~l~v~D----i~~i~~iA~~~gi~~vvDnT~at----- 189 (397)
T d1y4ia1 128 I------NVRFVDAGKPEEIRAAMR---PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMS----- 189 (397)
T ss_dssp C------EEEEECTTSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC-----
T ss_pred e------EeeccCCCCHHHHHHhcC---CCCcEEEecCCcccceeecc----cHHHHHHhhcCCceEEecCcccC-----
Confidence 1 355666778999999986 47999999999999988888 99999999999999999998742
Q ss_pred CccccccCCCCcee--ehhhhcCC-C-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 297 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 297 ~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
+..+.-+..-.|++ +++|-++| + .=.|.++++++.+...+.. ......-...+|..+..++..|+.+ .-..++
T Consensus 190 P~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~-~~~~~~G~~l~p~~a~l~~rgl~TL--~lRm~~ 266 (397)
T d1y4ia1 190 PYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV-GLKDITGGCMSPFNAWLTLRGVKTL--GIRMER 266 (397)
T ss_dssp TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT-HHHHTTCCCCCHHHHHHHHHHHTTH--HHHHHH
T ss_pred cccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHH-HHHhCcCCcCCHHHHHHHHcCcCcH--HHHHHH
Confidence 12222222234555 79999996 3 5577778998876654310 1111112245677777666666533 234455
Q ss_pred HHHHHHHHHHHHHH
Q 011959 373 LNKITGELTQGIID 386 (474)
Q Consensus 373 ~~~~~~~l~~~L~~ 386 (474)
..++...+.+.|++
T Consensus 267 ~~~nA~~lA~~L~~ 280 (397)
T d1y4ia1 267 HCENALKIARFLEG 280 (397)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 66667677666654
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=1.2e-11 Score=118.66 Aligned_cols=213 Identities=15% Similarity=0.166 Sum_probs=139.2
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++....|.++|+++- +.+..+.++||..|+..++.. ....++.||..+..|.+........... .+
T Consensus 48 ~nPt~~~le~~la~LE-gg~~a~~~sSGMaAi~~~l~~--l~~~gd~vv~~~~~yg~t~~~~~~~~~~----------~g 114 (384)
T d1cs1a_ 48 GNPTRDVVQRALAELE-GGAGAVLTNTGMSAIHLVTTV--FLKPGDLLVAPHDCYGGSYRLFDSLAKR----------GC 114 (384)
T ss_dssp CCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEETTCCHHHHHHHHHHHTT----------TS
T ss_pred CCHHHHHHHHHHHHHh-CCCceEEecChHHHHHHHHhh--cccccceecccccccchhhhhhhhhhcc----------cc
Confidence 3566677888888777 567899999999999999873 2344566666666665533322221111 11
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCcccC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGFRLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~r~g 295 (474)
..+..+...|.+.+++.+.. ++++|++|++-|++..+.+ +++|+++|+++|+++|+|... +.+
T Consensus 115 ------~~~~~~d~~d~~~~~~~~~~---~t~~v~~EspsNP~l~v~D----i~~i~~ia~~~g~~~vVDNT~atP~--- 178 (384)
T d1cs1a_ 115 ------YRVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPA--- 178 (384)
T ss_dssp ------CEEEEECTTCHHHHHHHHHT---CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTT---
T ss_pred ------cccccccCCCHHHHHhhccc---cccEEEEeccccccceecc----HHHHhhhhhhcCcEEEEeccccCcc---
Confidence 13455556689999998874 6789999999999998988 999999999999999999998 432
Q ss_pred CCccccccCCCCcee--ehhhhcCC-C-cceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
.+.-+..-.||+ +++|.++| | .=.|+++++ +++.+.+.. .........+|..+...+..|+.+ .-..
T Consensus 179 ---~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~---~~~~~G~~~~p~~a~ll~rgL~TL--~lRm 250 (384)
T d1cs1a_ 179 ---LQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW---WANNIGVTGGAFDSYLLLRGLRTL--VPRM 250 (384)
T ss_dssp ---TCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH---HHHHHTCBCCHHHHHHHHHHHTTH--HHHH
T ss_pred ---cccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhh---hhhhhhhccccccHHHHhhccchh--HHHH
Confidence 112122234555 79999996 4 556767664 455555442 111112245677766666555433 3344
Q ss_pred HHHHHHHHHHHHHHHH
Q 011959 371 EYLNKITGELTQGIID 386 (474)
Q Consensus 371 ~~~~~~~~~l~~~L~~ 386 (474)
++..++...+.+.|++
T Consensus 251 ~~~~~nA~~lA~~L~~ 266 (384)
T d1cs1a_ 251 ELAQRNAQAIVKYLQT 266 (384)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccc
Confidence 5556666666666653
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.43 E-value=8.3e-12 Score=120.92 Aligned_cols=306 Identities=14% Similarity=0.104 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcC-CcEEEEEeCCCCCCch
Q 011959 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG-RERIIKFEGCYHGHAD 196 (474)
Q Consensus 118 p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~-~~~ii~~~~~yhg~~~ 196 (474)
++-++++.+.++.+... .-+...++.+++++++ +.+.+++++|||.|+..|++......+ +++||+..-+|.. +.
T Consensus 12 ~~~~~~v~~~l~~~~~~--~G~~v~~fE~~~~~~~-g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a-~~ 87 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQLT--QGKRSLLFEEALCEFL-GVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVA-TA 87 (371)
T ss_dssp HHHHHHHHHHHTSSCCS--SSHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTH-HH
T ss_pred HHHHHHHHHHHcCCCcc--CCHHHHHHHHHHHHHH-CcCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccc-cc
Confidence 56677888988775422 2345566777777777 778999999999999999995433333 3467775545544 33
Q ss_pred hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHH
Q 011959 197 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 197 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
.++...|..+.-...... . +.+.+++++.+. .++.+|++-... |...+ +++|.++|
T Consensus 88 ~ai~~~G~~pv~vDi~~~-~-------------~~~~~~~~~~~~---~~t~avi~vh~~---G~~~~----~~~i~~~~ 143 (371)
T d2fnua1 88 NMLLESGYTPVFAGIKND-G-------------NIDELALEKLIN---ERTKAIVSVDYA---GKSVE----VESVQKLC 143 (371)
T ss_dssp HHHHHTTCEEEECCBCTT-S-------------SBCGGGSGGGCC---TTEEEEEEECGG---GCCCC----HHHHHHHH
T ss_pred eeeeccCccccccccccc-c-------------cccchhhhhhcc---chhhcccccccc---ccccc----cccccccc
Confidence 344444443221111100 0 113344554443 467888876655 44555 88999999
Q ss_pred HHhCCEEEEecccc-CcccCCCccccccCCCCceeeh----hhhcCCCcceEEEEec-HHHHHhhcC---CCC-------
Q 011959 277 KENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTL----GKIIGGGLPVGAYGGR-RDIMEMVAP---AGP------- 340 (474)
Q Consensus 277 ~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pdi~t~----sK~l~~G~~iG~~~~~-~~i~~~~~~---~~~------- 340 (474)
+++|++||.|.+|+ |... .-...|-.-|+.++ .|.+++|- .|+++.+ +++.+.++. .+.
T Consensus 144 ~~~~i~lIEDaaqa~Ga~~----~~~~~G~~g~~~~~Sf~~~K~l~~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~ 218 (371)
T d2fnua1 144 KKHSLSFLSDSSHALGSEY----QNKKVGGFALASVFSFHAIKPITTAE-GGAVVTNDSELHEKMKLFRSHGMLKKDFFE 218 (371)
T ss_dssp HHHTCEEEEECTTCTTCEE----TTEETTSSSSEEEEECCTTSSSCCSS-CEEEEESCHHHHHHHHHHTBTTEEESSSSC
T ss_pred cccchhhccchhhccCcee----ccccCCcccccccccccccccccccc-ceEEEeechhhhhhcccccccccccccccc
Confidence 99999999999995 2211 11223334455543 58888543 5666554 566655542 110
Q ss_pred ---cccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE------eeeceeEEEEEecC
Q 011959 341 ---MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG------GYISGMFGFFFTEG 411 (474)
Q Consensus 341 ---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v------~~~g~~~~i~~~~~ 411 (474)
...+..+..+.+.++.++..|+.+ +...++-+++.+++.+.|.+ .+..... ......+.+.+...
T Consensus 219 ~~~~~~G~n~r~sel~Aaigl~qL~~l--~~~~~~R~~~~~~y~~~l~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~ 292 (371)
T d2fnua1 219 GEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKD----NPYFTPLHPLLKDKSSNHLYPILMHQK 292 (371)
T ss_dssp EEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTT----CSSEEESGGGCSSCCCCSCEEEEECGG
T ss_pred cccccccccccccchhhhhhhhhhhhc--cchhhhhhhhhhhhcccccc----ccccccccccccccccccccccccccc
Confidence 011334556777777777777544 34444444555555555543 3221110 11112223333221
Q ss_pred CCcCcccccccchHHHHHHHHHHHHCCeEecccCCc-------------------------ceEEe--cCCcHHHHHHHH
Q 011959 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTS--LAHSSDDIQHTI 464 (474)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-------------------------~~~~~--~~~t~e~i~~~l 464 (474)
.......+.+.|.++||-+.+...+ .+.++ ...|++|++.++
T Consensus 293 -----------~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~ 361 (371)
T d2fnua1 293 -----------FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIA 361 (371)
T ss_dssp -----------GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred -----------chhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHH
Confidence 1112257889999999977643111 12444 345999999999
Q ss_pred HHHHHHHhh
Q 011959 465 TAAEKVLRQ 473 (474)
Q Consensus 465 ~~l~~~~~~ 473 (474)
+.+.++++.
T Consensus 362 ~~i~~~~~~ 370 (371)
T d2fnua1 362 HSVLKTFES 370 (371)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999998864
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=4.8e-12 Score=125.28 Aligned_cols=325 Identities=10% Similarity=-0.037 Sum_probs=187.4
Q ss_pred CCHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHhhCCCC------CeEEEeCCHHHHHHHHHHHhHhh-------
Q 011959 116 ADDQVLAALGETMKKGTS----FGAPCLLENVLAEMVISAVPSI------EMVRFVNSGTEACMGVLRLARAF------- 178 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~----~~~~~~~~~~la~~l~~~~~~~------~~v~~~~sGseA~~~al~~ar~~------- 178 (474)
-+|++.+.+.+.+.+... |....+.+.++.++|+++++-+ -.-.+|+|||||+..|+..||..
T Consensus 66 ~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~ 145 (450)
T d1pmma_ 66 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 145 (450)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhh
Confidence 478888888887765321 1123578889999999988511 12589999999999999988643
Q ss_pred ---cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 179 ---TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 179 ---~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
.....+++ ....|....-++...|.+...++.....+. -|+++|++++++ ++++|++.-.
T Consensus 146 ~g~~~~~~~~~-~~~~H~s~~Kaa~~~gi~~~~v~~~~~~~~-------------~d~~~L~~~i~~---~t~~Vv~t~g 208 (450)
T d1pmma_ 146 AGKPTDKPNLV-CGPVQICWHKFARYWDVELREIPMRPGQLF-------------MDPKRMIEACDE---NTIGVVPTFG 208 (450)
T ss_dssp HTCCCSCCEEE-ESSCCHHHHHHHHHTTCEEEECCCBTTBCS-------------CCHHHHHHHCCT---TEEEEECBBS
T ss_pred cCCCCCCceEE-ecccHHHHHHHHHHcCCCceEeeecCCCCc-------------CcHHHHHHHhhh---CceEEEeeee
Confidence 12233444 445687666666666665433222111111 189999999874 5778887777
Q ss_pred cCCCCcccCCHHHHHHHHHHH------HHhCCEEEEeccccCc-c-cCCCccccccCC-CCceeeh--hhhcCCCcceEE
Q 011959 256 VGNSGFIAPKPDFLNAIRRIT------KENGALLIFDEVMTGF-R-LAYGGAQEYFGV-TPDLTTL--GKIIGGGLPVGA 324 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~------~~~g~llI~DEv~~g~-r-~g~~~~~~~~g~-~pdi~t~--sK~l~~G~~iG~ 324 (474)
.+.+|.+.| +++|.++| +++|++|++|-++.|+ - .-.....-.+++ ..|.+++ -|.+.+.+.+|+
T Consensus 209 tt~tG~~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~ 284 (450)
T d1pmma_ 209 VTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGW 284 (450)
T ss_dssp CTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEE
T ss_pred eccCCCccc----cchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCCCeeE
Confidence 777899988 66666654 5689999999999875 2 110000001222 2466654 487776677999
Q ss_pred EEecHHH-HHhhcCCCCc-----ccccCCC--CChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011959 325 YGGRRDI-MEMVAPAGPM-----YQAGTLS--GNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGH 393 (474)
Q Consensus 325 ~~~~~~i-~~~~~~~~~~-----~~~~t~~--~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (474)
++.+++- .......... +...+.. -+.....+...++..+.. .+..++..++.++|.++|++.. ++
T Consensus 285 l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~---~~ 361 (450)
T d1pmma_ 285 VIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLG---PY 361 (450)
T ss_dssp EEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---CE
T ss_pred EEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCC---Ce
Confidence 9887542 2111100000 0011222 222333334455554433 4555666667777777776541 11
Q ss_pred eeEEee--e--ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc----C-C--cceEEe--cCCcHHHH
Q 011959 394 AICGGY--I--SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----Q-F--EAGFTS--LAHSSDDI 460 (474)
Q Consensus 394 ~~~v~~--~--g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~-~--~~~~~~--~~~t~e~i 460 (474)
.....+ . -..+.|.+.+..... .....+.+.|.++|.++... . . ..+|+. -..|++++
T Consensus 362 el~~~~~p~~~l~~V~Fr~~~~~~~~---------~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~ 432 (450)
T d1pmma_ 362 EFICTGRPDEGIPAVCFKLKDGEDPG---------YTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFA 432 (450)
T ss_dssp EEEEECCTTTBSSEEEEEECTTCCCS---------SCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHH
T ss_pred EEEeCCCCCCceEEEEEecCCcccCC---------CCHHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEEccCCCCHHHH
Confidence 111111 1 122444443321111 11246788999999765321 1 1 123443 45599999
Q ss_pred HHHHHHHHHHHhh
Q 011959 461 QHTITAAEKVLRQ 473 (474)
Q Consensus 461 ~~~l~~l~~~~~~ 473 (474)
|++++.|++++++
T Consensus 433 d~lv~dl~~~v~~ 445 (450)
T d1pmma_ 433 ELLLEDYKASLKY 445 (450)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=1.1e-11 Score=119.42 Aligned_cols=214 Identities=10% Similarity=0.019 Sum_probs=139.2
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++....|.+++++.- +.+.++.++||..|+..++.. ....++.||+....|-| +...+...- + ..|
T Consensus 56 ~nPt~~~le~~la~LE-g~~~a~~~~SGMaAi~~~l~~--l~~~Gd~iv~~~~~Yg~-T~~l~~~~l--------~-~~G 122 (391)
T d1cl1a_ 56 GTLTHFSLQQAMCELE-GGAGCVLFPCGAAAVANSILA--FIEQGDHVLMTNTAYEP-SQDFCSKIL--------S-KLG 122 (391)
T ss_dssp CCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEETTSCHH-HHHHHHHTG--------G-GGT
T ss_pred CChhHHHHHHHHHHHh-CCccEEEeccccceeeehhhc--ccCCCCeEEEecccccc-hhhhhhhcc--------c-ccc
Confidence 4677788999998887 568899999999999999873 23456677776655544 444433210 0 112
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccCccc
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGFRL 294 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~r~ 294 (474)
.++..+...|.+++++.++ +++++|++|.+.|+...+.+ ++.++++|+++ |+++|+|......
T Consensus 123 ------i~~~~~d~~d~~~~~~~i~---~~t~~i~~EtpsNP~l~v~D----i~~i~~~a~~~~~g~~~vVDnT~atP-- 187 (391)
T d1cl1a_ 123 ------VTTSWFDPLIGADIVKHLQ---PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAAG-- 187 (391)
T ss_dssp ------CEEEEECTTCGGGGGGTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTTT--
T ss_pred ------cccccccCccccccccccc---cccceeeecccCcccccccc----cHHHHHHHHhccCCcEEEEeccccch--
Confidence 1345555557777777665 47899999999999888888 99999999875 9999999998421
Q ss_pred CCCccccccCCCCcee--ehhhhcCC-C-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 295 AYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 295 g~~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
..+.-+..-.|++ +++|.++| | .-.|.+++++++.+.+.... ...+ -..+|..+...+..|+.+ .-..
T Consensus 188 ---~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~-~~~G--~~~~p~~a~ll~rgl~TL--~lR~ 259 (391)
T d1cl1a_ 188 ---VLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA-YLMG--QMVDADTAYITSRGLRTL--GVRL 259 (391)
T ss_dssp ---TSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH-HHTT--CCCCHHHHHHHHHHHTTH--HHHH
T ss_pred ---hhhcccccccceEEeecchhccccccccccceeccccccccchhhh-hccc--ccCCchhhhhhhccchhH--HHHH
Confidence 1222222234555 79999996 4 55677788888776665211 1112 234566655555544432 3344
Q ss_pred HHHHHHHHHHHHHHHH
Q 011959 371 EYLNKITGELTQGIID 386 (474)
Q Consensus 371 ~~~~~~~~~l~~~L~~ 386 (474)
++..++...+.+.|++
T Consensus 260 ~~~~~nA~~vA~~L~~ 275 (391)
T d1cl1a_ 260 RQHHESSLKVAEWLAE 275 (391)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5556666666666653
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.36 E-value=1.5e-11 Score=116.10 Aligned_cols=211 Identities=13% Similarity=0.074 Sum_probs=137.8
Q ss_pred HHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCC
Q 011959 143 VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGAT 222 (474)
Q Consensus 143 ~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~ 222 (474)
.|.+++++.. +.+.++.++||..|+..++.. ....++.||..+..|.|....+-.... ..|
T Consensus 2 aLE~~la~Le-g~~~a~~~sSGMaAi~~~l~~--ll~~Gd~iv~~~~~Yg~t~~~~~~~l~----------~~g------ 62 (331)
T d1pffa_ 2 ALEGKIAKLE-HAEACAATASGMGAIAASVWT--FLKAGDHLISDDCLYGCTHALFEHQLR----------KFG------ 62 (331)
T ss_dssp HHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEEESCCCHHHHHHHHTHHH----------HTT------
T ss_pred HHHHHHHHHh-CCCeEEEECCHHHHHHHHHHH--HhCCCCEEEEeCCCchHHHHHHHHHHH----------hcC------
Confidence 3555565555 678899999999999988863 234567888888888774332211100 011
Q ss_pred CceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHH-HHhCCEEEEeccccCcccCCCcccc
Q 011959 223 YETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT-KENGALLIFDEVMTGFRLAYGGAQE 301 (474)
Q Consensus 223 ~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~-~~~g~llI~DEv~~g~r~g~~~~~~ 301 (474)
.++..++..|.+.+++.++ ++++.|++|.+.|+...+.+ ++.+++++ +++|+++|+|...... ..+.
T Consensus 63 i~~~~~d~~d~~~~~~~i~---~~t~~i~~Es~~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~atp-----~~~~ 130 (331)
T d1pffa_ 63 VEVDFIDMAVPGNIEKHLK---PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP-----ILTN 130 (331)
T ss_dssp CEEEEECTTSTTHHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH-----HHCC
T ss_pred eEEEEecccchhhHhhhcc---cccceeeeeccccccccccc----chhhhhhhhcccCceEEeecccccc-----cccc
Confidence 1355566668888888876 47899999999999888888 88888885 6789999999988522 1112
Q ss_pred ccCCCCcee--ehhhhcCC-C-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 011959 302 YFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT 377 (474)
Q Consensus 302 ~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~ 377 (474)
-+....|++ +++|.++| | .-.|+++++++.+...... ......-...+|..+...+..|+.+ +-..++..++.
T Consensus 131 pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~-~~~~~~G~~l~p~~a~ll~rgl~Tl--~~Rm~~~~~nA 207 (331)
T d1pffa_ 131 PLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQ-GIKDITGAIISPHDAWLITRGTLTL--DMRVKRAAENA 207 (331)
T ss_dssp GGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHT-CCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred ccccCCCEEEecchhhcCCCCccccccccccccchhhhhhh-hhhhccCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 222224655 79999986 4 5677778887765544311 1111111245677777777777654 33556667777
Q ss_pred HHHHHHHHHH
Q 011959 378 GELTQGIIDA 387 (474)
Q Consensus 378 ~~l~~~L~~~ 387 (474)
..+.+.|++.
T Consensus 208 ~~lA~~L~~h 217 (331)
T d1pffa_ 208 QKVAEFLHEH 217 (331)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHhhhhC
Confidence 7777777653
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.32 E-value=8.5e-11 Score=113.17 Aligned_cols=215 Identities=12% Similarity=0.061 Sum_probs=139.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcC-CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~-~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
.++-...|.+.|+++- +.+..+.++||..|+..++. .+.. ++.|+..+..|.| +...+...-. ..
T Consensus 57 ~nPT~~~le~~la~LE-g~~~a~~~sSGmaAi~~~~l---~l~~~gd~vv~~~~~yg~-t~~~~~~~~~---------~~ 122 (394)
T d1e5ea_ 57 GNPTVSNLEGKIAFLE-KTEACVATSSGMGAIAATVL---TILKAGDHLISDECLYGC-THALFEHALT---------KF 122 (394)
T ss_dssp CCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHH---HHCCTTCEEEEESCCCHH-HHHHHHTHHH---------HT
T ss_pred CCHHHHHHHHHHHHHh-CCcceeeeccchHHHHHHHH---hhcccccccccccceeeh-hhHhHHHHhh---------cc
Confidence 4677788899998877 56788999999999998886 4444 4555555555544 4333321100 01
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH-hCCEEEEeccccCccc
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGFRL 294 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-~g~llI~DEv~~g~r~ 294 (474)
+ ..+..++..|.+++++.++ +++++|++|.+.|++..+.+ ++++.+++++ +|+++|+|.....
T Consensus 123 g------i~~~~~d~~d~~~~~~~i~---~~t~lv~~Etp~NP~l~v~D----i~~~~~~~~~~~g~~vvvDnT~at--- 186 (394)
T d1e5ea_ 123 G------IQVDFINTAIPGEVKKHMK---PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCS--- 186 (394)
T ss_dssp T------CEEEEECTTSTTHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTC---
T ss_pred c------eeeeccCCCCHHHHHHhhc---ccccEEEEeccCCcceeeeh----hhhhhhccccccCeEEEecCcccC---
Confidence 1 1356666678899999887 36899999999999888888 8888886664 6899999998842
Q ss_pred CCCccccccCCCCcee--ehhhhcCC-C-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 295 AYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 295 g~~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
+..+.-+..-.||+ +.+|.++| + .-.|.++++++.+...+.. ......-...+|..+...+..|+.+ +-..
T Consensus 187 --P~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~-~~~~~~G~~lsp~~a~ll~rgl~TL--~lRm 261 (394)
T d1e5ea_ 187 --PMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMV-GIKDITGSVISPHDAWLITRGLSTL--NIRM 261 (394)
T ss_dssp --TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT-CCCCCCCCCCCHHHHHHHHHHHTTH--HHHH
T ss_pred --cccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHH-HHHHhhCCCCChHHHHHHHhhchhH--HHHH
Confidence 12222222234655 79999996 4 5677788888877654311 1111111234666666655555433 3345
Q ss_pred HHHHHHHHHHHHHHHH
Q 011959 371 EYLNKITGELTQGIID 386 (474)
Q Consensus 371 ~~~~~~~~~l~~~L~~ 386 (474)
++..++...+.+.|++
T Consensus 262 ~r~~~nA~~lA~~L~~ 277 (394)
T d1e5ea_ 262 KAESENAMKVAEYLKS 277 (394)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5666677777777664
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=7.3e-11 Score=113.47 Aligned_cols=211 Identities=14% Similarity=0.153 Sum_probs=137.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++-...|.++|+++. +.+..+.++||..|+..++. .+..++.||.....|.+....+.... + ..+
T Consensus 53 gnPT~~~lE~~la~LE-~~~~a~~~sSGmaAi~~~l~---~l~~gd~iv~~~~~yg~t~~~~~~~l---------~-~~g 118 (393)
T d1n8pa_ 53 QNPNRENLERAVAALE-NAQYGLAFSSGSATTATILQ---SLPQGSHAVSIGDVYGGTHRYFTKVA---------N-AHG 118 (393)
T ss_dssp CCHHHHHHHHHHHHHT-TCSEEEEESCHHHHHHHHHH---TSCSSCEEEEESSCCHHHHHHHHHTS---------T-TTC
T ss_pred CChHHHHHHHHHHHHh-CCceEEEecCchhHHHhhhh---cccCCCeeeeeeeecccchhhhhhhh---------h-ccc
Confidence 4566778888888887 56788999999988876554 45567889988888877433332211 1 111
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH----HhCCEEEEeccccCc
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK----ENGALLIFDEVMTGF 292 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~----~~g~llI~DEv~~g~ 292 (474)
+ ++..+. .+.+++++.++ +++++|++|.+-|+...+.+ +++|+++|+ ++|+++|+|..+..-
T Consensus 119 i------~~~~~~-~~~~~~~~~i~---~~t~lv~~EspsNP~l~v~D----i~~ia~~a~~~~~~~g~~lvVDnT~atP 184 (393)
T d1n8pa_ 119 V------ETSFTN-DLLNDLPQLIK---ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLSP 184 (393)
T ss_dssp S------CCEEES-SHHHHHHHHSC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTHH
T ss_pred c------eeEEee-cchHHHHHHhh---hhcceeEecCcchhhhhccc----hhhhhhhhhhhcccCCceEEEecCccCc
Confidence 1 223333 24678888876 47899999999999988888 999999999 678999999998421
Q ss_pred ccCCCccccccCCCCcee--ehhhhcCC-C-cceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCC
Q 011959 293 RLAYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367 (474)
Q Consensus 293 r~g~~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 367 (474)
..+.-+..-.||+ +++|.++| | .-.|.++. ++++.+.++. .........+|..+...+..|+.+ +
T Consensus 185 -----~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~---~~~~~G~~~~p~~a~ll~rgl~Tl--~ 254 (393)
T d1n8pa_ 185 -----YISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQF---LQNAIGAIPSPFDAWLTHRGLKTL--H 254 (393)
T ss_dssp -----HHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--H
T ss_pred -----ccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHH---HHhhcCCCCChHHHHHHHhCCcch--h
Confidence 1111122234655 79999986 4 66777654 4566666652 111112245677766666655433 3
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 011959 368 GTYEYLNKITGELTQGII 385 (474)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~ 385 (474)
-..++..++...+.+.|+
T Consensus 255 lR~~~~~~nA~~lA~~L~ 272 (393)
T d1n8pa_ 255 LRVRQAALSANKIAEFLA 272 (393)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345566666767777664
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.27 E-value=8.2e-12 Score=120.42 Aligned_cols=318 Identities=12% Similarity=-0.035 Sum_probs=158.6
Q ss_pred CHHHHHHHHHHHHhcCC-------CCC----CCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHhHhhcCCcE
Q 011959 117 DDQVLAALGETMKKGTS-------FGA----PCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRER 183 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~-------~~~----~~~~~~~la~~l~~~~~~--~~~v~~~~sGseA~~~al~~ar~~~~~~~ 183 (474)
+++|+++|.+++.+..+ ++. ..+...+..+.|++.+.. ...++|++|++++++.++... ...++++
T Consensus 15 p~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~-l~~~~~~ 93 (361)
T d2c0ra1 15 PLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMN-FLKEGQT 93 (361)
T ss_dssp CHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHH-HCCTTCE
T ss_pred CHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc-cccCCCc
Confidence 68999999887744110 111 135667888888888863 336888777766655444321 3344566
Q ss_pred EEEEeCCCCCCchhHHHh-cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcc
Q 011959 184 IIKFEGCYHGHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 262 (474)
Q Consensus 184 ii~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i 262 (474)
++....+.++.....+.. .|..+.....+.... .+++.+++.+..+ ... .++ +.+|.+
T Consensus 94 ~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~--------------~~~~~~~~~~~~~--~~~--~v~---~~tg~~ 152 (361)
T d2c0ra1 94 ANYVMTGSWASKALKEAKLIGDTHVAASSEASNY--------------MTLPKLQEIQLQD--NAA--YLH---LTSNET 152 (361)
T ss_dssp EEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTT--------------CSCCCGGGCCCCT--TEE--EEE---EESEET
T ss_pred eEEEeechhhhhhhhhhhhcCceeeeeccccccc--------------cchhhhhhhcccC--cce--EEE---Eecccc
Confidence 666655444433222222 232211111111000 1344444444422 222 222 235666
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCc-
Q 011959 263 APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM- 341 (474)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~- 341 (474)
.+ +.++.++|++||+++++|.+++- .+..... ..+..|+.+.+|.++.+-..++++..+.+.+.-......
T Consensus 153 ~~----~~~i~~~~~~~~al~~vDavss~--g~~~id~--~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (361)
T d2c0ra1 153 IE----GAQFKAFPDTGSVPLIGDMSSDI--LSRPFDL--NQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTML 224 (361)
T ss_dssp TT----TEECSSCCCCTTSCEEEECTTTT--TSSCCCG--GGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGG
T ss_pred ee----cceEEEeeccCCceEEEEeeccc--ccccccc--ccceeEEEecccccccccCcEEEEEhHHhhhCcccccccc
Confidence 66 55688999999999999999951 1112222 234557788899987321233334443332211110000
Q ss_pred -------ccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecC-CC
Q 011959 342 -------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PV 413 (474)
Q Consensus 342 -------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~-~~ 413 (474)
........++........++......+......++.+..+..+........... .+....+ ..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~rS 295 (361)
T d2c0ra1 225 RYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFY---------RGCVDVDSRS 295 (361)
T ss_dssp CHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSS---------EESSCGGGBC
T ss_pred ccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhccccc---------ccCCChhhcc
Confidence 011112223333333333333333333333333333333333333222211100 0000000 00
Q ss_pred cCcccccccchHHHHHHHHHHHHCCeEecccCC--cceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 414 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
........++.....++.+.|.++||.+..+.. ..+|++ ..+|.||++++++.|++..++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 296 DMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 111122234555667899999999999887632 247886 455999999999999997654
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.21 E-value=7.6e-10 Score=106.91 Aligned_cols=163 Identities=20% Similarity=0.187 Sum_probs=111.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++....|.++|+++- +.+..+.++||..|+..++.. ....++.||+.+..|+|.......... ..+
T Consensus 56 ~nPT~~~LE~~la~LE-~~~~a~~~~SGmaAi~~~~~~--l~~~gd~il~~~~~Yg~t~~l~~~~~~----------~~g 122 (421)
T d2ctza1 56 MNPTVDVLEKRLAALE-GGKAALATASGHAAQFLALTT--LAQAGDNIVSTPNLYGGTFNQFKVTLK----------RLG 122 (421)
T ss_dssp BCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH--HCCTTCEEEECSCCCHHHHHHHHTHHH----------HTT
T ss_pred CCHHHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHh--hcccccceeecCCcCCchhHHHHHHHh----------hcc
Confidence 4677788888888887 567899999999999988873 334577888888888774332221110 011
Q ss_pred CCCCCCCceEEccCCC-HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 217 VPKGATYETLTAPFND-VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d-~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
+ .+..+...| .+..++.++ +++++|++|.+.|++..+.+ ++.|+++|+++|+++|+|.....
T Consensus 123 i------~~~~~d~~~~~~~~~~~~~---~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vvDnT~a~---- 185 (421)
T d2ctza1 123 I------EVRFTSREERPEEFLALTD---EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGM---- 185 (421)
T ss_dssp C------EEEECCTTCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGG----
T ss_pred c------cceecccccCcchhccccC---CCceEEEEcCCCcceeEecc----hHHHHHHHHhcCCceEecccccc----
Confidence 1 233333223 445555554 47999999999999999988 99999999999999999998841
Q ss_pred CCccccccCCCCcee--ehhhhcCC-C-cceEEEEecH
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRR 329 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~~ 329 (474)
.+..+.-+....|++ +++|-++| | .=.|.++.++
T Consensus 186 tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~ 223 (421)
T d2ctza1 186 GGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGG 223 (421)
T ss_dssp GGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred cceeccccccCCcEEEEechhhccCCCCeEEEEEEcCC
Confidence 011122222334655 79999996 4 5566666544
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=2.2e-09 Score=102.19 Aligned_cols=307 Identities=14% Similarity=0.129 Sum_probs=173.2
Q ss_pred CCHHHHHHHHHHHHh-cC-------CCCCC--CHHHHHHH-HHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcE
Q 011959 116 ADDQVLAALGETMKK-GT-------SFGAP--CLLENVLA-EMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRER 183 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~-~~-------~~~~~--~~~~~~la-~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ 183 (474)
.+|.|++++...+.+ .. .|++. .+..+.|+ ++..+.| +.+.+-+ ..||+.||.+++.. ...++++
T Consensus 38 ~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF-~a~~anVqp~SGs~AN~av~~A--ll~pGD~ 114 (416)
T d1dfoa_ 38 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELF-GADYANVQPHSGSQANFAVYTA--LLEPGDT 114 (416)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-TCSEEECCCSSHHHHHHHHHHH--HCCTTCE
T ss_pred CCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHh-CCCcceeecccCccHHHHHHHH--hcCCCCe
Confidence 468888877666643 11 12221 12223333 3344455 4444433 57999999999983 2345677
Q ss_pred EEEEeCCCCCCchhHH--HhcCCCCccCCCCCCCCCCCCCCCceEEccC-----CCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 184 IIKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 184 ii~~~~~yhg~~~~~~--~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
|+..+...-|+..... ...|... +.+.++. -|.+.++++.+++ ++++||+-.
T Consensus 115 Il~l~l~~GGHlshg~~~~~~g~~~-----------------~~~~y~~d~~~~IDyd~l~~~a~~~--kPklIi~G~-- 173 (416)
T d1dfoa_ 115 VLGMNLAHGGHLTHGSPVNFSGKLY-----------------NIVPYGIDATGHIDYADLEKQAKEH--KPKMIIGGF-- 173 (416)
T ss_dssp EEEECTTTTCCGGGTCTTSHHHHHS-----------------EEEEECBCSSSSBCHHHHHHHHHHH--CCSEEEEEC--
T ss_pred eeeccccccccccccccccccCceE-----------------EEEecccCCccCccHHHHHHHHHHh--ccceEEecc--
Confidence 7777654333321110 0001000 1111111 1899999988865 567777753
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEec---H
Q 011959 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR---R 329 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~---~ 329 (474)
+.-....+ +++++++|++.|++|++|-+| +|+ -.|. +. +-+.. .|++ |..|+|.| -|-|.++.+ +
T Consensus 174 S~y~r~~d----~~~~reiad~vga~l~~D~aH~~GLIa~g~-~~-sP~~~-aDvvt~tThKtlrG-PrggiI~~~~~~~ 245 (416)
T d1dfoa_ 174 SAYSGVVD----WAKMREIADSIGAYLFVDMAHVAGLVAAGV-YP-NPVPH-AHVVTTTTHKTLAG-PRGGLILAKGGSE 245 (416)
T ss_dssp SSCCSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTS-SC-CCTTT-SSEEEEESSSTTCC-CSCEEEEESSCCH
T ss_pred cccccccC----HHHHHHHHHhcCceEEcchhhhhcceeccc-cC-Ccccc-cceeeeehhhcccC-CCceEEEeccchH
Confidence 22334455 999999999999999999999 777 3332 11 12222 3777 46799984 466777764 5
Q ss_pred HHHHhhcCCCCcccccCCCCChHHHHHH-HHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEE
Q 011959 330 DIMEMVAPAGPMYQAGTLSGNPLAMTAG-IHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 405 (474)
Q Consensus 330 ~i~~~~~~~~~~~~~~t~~~~~~~~aaa-~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~ 405 (474)
++.+.+.. ..+- +..+++-....|+ ..++....+ .++.+++.++.+.|.+.|.+.+.+. .. -.-...++.
T Consensus 246 ~~~~~i~~--avfP-g~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~i--v~-ggTdnHlvl 319 (416)
T d1dfoa_ 246 ELYKKLNS--AVFP-GGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKV--VS-GGTDNHLFL 319 (416)
T ss_dssp HHHHHHHH--HHTT-TTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEE--GG-GSCSSSEEE
T ss_pred hHHHHHHh--hhCc-ccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCccc--cc-CCCCCceeE
Confidence 66666652 1111 2223332333333 344555433 4677778888888888887753211 10 001234556
Q ss_pred EEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------CcceEE------ecCCcHHHHHHHHHHHHH
Q 011959 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFT------SLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------~~~~~~------~~~~t~e~i~~~l~~l~~ 469 (474)
+++.+.. .....+.+.|.+.||.+.... ...+|+ .....++|++++.+.|.+
T Consensus 320 vdl~~~~------------~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~ 387 (416)
T d1dfoa_ 320 VDLVDKN------------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCD 387 (416)
T ss_dssp EECGGGT------------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred EEecccC------------CCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHH
Confidence 6653211 112445566667799875321 124676 256789999999999988
Q ss_pred HHh
Q 011959 470 VLR 472 (474)
Q Consensus 470 ~~~ 472 (474)
+++
T Consensus 388 ~l~ 390 (416)
T d1dfoa_ 388 VLD 390 (416)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.14 E-value=5.1e-11 Score=114.53 Aligned_cols=311 Identities=11% Similarity=-0.018 Sum_probs=159.2
Q ss_pred CCHHHHHHHHHHHHhcCC--C-----CC----CCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCc
Q 011959 116 ADDQVLAALGETMKKGTS--F-----GA----PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRE 182 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~--~-----~~----~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~ 182 (474)
.+++|++++.+++-+... . +. ..+...+..+.|++++. +.+.++|++|+++++..+.... ...+++
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~-~~~~~~ 92 (360)
T d1w23a_ 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMN-LLTKGT 92 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-HCCTTC
T ss_pred CCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhh-hcccCc
Confidence 379999999997743110 0 00 12355677777877775 2335778887777766555532 345566
Q ss_pred EEEEEeCCCCCCchhHHHhc-CCCCccCCCCCCCCCCCCCCCceEEccC---CCHHHHHHHHhcCCCCeEEEEEccccCC
Q 011959 183 RIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNKGEIAAIILEPVVGN 258 (474)
Q Consensus 183 ~ii~~~~~yhg~~~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~---~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (474)
+++....+.++......... +.... ....+. .+++.++.... ....+.++.+
T Consensus 93 ~v~~~~~g~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--- 148 (360)
T d1w23a_ 93 IGNYVLTGSWSEKALKEAKLLGETHI-----------------AASTKANSYQSIPDFSEFQL----NENDAYLHIT--- 148 (360)
T ss_dssp EEEEEECSHHHHHHHHHHHTTSEEEE-----------------EEECGGGTSCSCCCGGGCCC----CTTEEEEEEE---
T ss_pred ccceeeccchhhhhHHHHHHhhhcce-----------------eeccccccccchhhhhhccc----ccccceeEec---
Confidence 77776665555433332221 11110 011111 11222222222 2234444433
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCC
Q 011959 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA 338 (474)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~ 338 (474)
+|.+.| +.+|.++|++||+++|+|-+++ + .+...-.+.+ ..|+.+++|.++.+-..|+++.++...+.....
T Consensus 149 tg~~~~----~~~i~~~~~~~g~l~ivDavqs-~-g~~~id~~~~--~vd~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 220 (360)
T d1w23a_ 149 SNNTIY----GTQYQNFPEINHAPLIADMSSD-I-LSRPLKVNQF--GMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQV 220 (360)
T ss_dssp SEETTT----TEECSSCCCCCSSCEEEECTTT-T-TSSCCCGGGC--SEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTC
T ss_pred CCcccc----ceeeeeccccceeeEEeecccc-c-cccccccccc--cceEEeeccccccCCcceeeEechhhhcccccC
Confidence 567777 6679999999999999999996 1 1112222333 457888999887443455555554433222111
Q ss_pred CCc--------ccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee------EEeeeceeE
Q 011959 339 GPM--------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI------CGGYISGMF 404 (474)
Q Consensus 339 ~~~--------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~------~v~~~g~~~ 404 (474)
... ..............+....+....+........+..+.....+........... ..++.+ ..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~-vv 299 (360)
T d1w23a_ 221 PTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLM-NV 299 (360)
T ss_dssp CGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSS-EE
T ss_pred CcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhccee-EE
Confidence 000 011111222233333333333333333333333333333333332222221110 011111 11
Q ss_pred EEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEEec--CCcHHHHHHHHHHHHHHHhh
Q 011959 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSL--AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~~~--~~t~e~i~~~l~~l~~~~~~ 473 (474)
.| ..++......+...|.++||.+..+. .+.+|++. .+|.|+++++++.|++..+.
T Consensus 300 sf-------------~i~~~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 300 TF-------------NLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp EE-------------ECSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EE-------------EcCCCccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 22 22445556788889999999987652 12578875 44999999999999998753
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.12 E-value=5.9e-09 Score=98.67 Aligned_cols=305 Identities=13% Similarity=0.124 Sum_probs=175.0
Q ss_pred CCHHHHHHHHHHHHh-cC-------CCCCC---CHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcE
Q 011959 116 ADDQVLAALGETMKK-GT-------SFGAP---CLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRER 183 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~-~~-------~~~~~---~~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ 183 (474)
.+|.|++++...+.+ .. .|++. .+.+.-..++..+.| +.+.+-+ ..||+.||.++... ...++++
T Consensus 35 ~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF-~a~~anVqp~SGs~An~av~~a--ll~pGD~ 111 (405)
T d1kl1a_ 35 VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF-GAEHANVQPHSGAQANMAVYFT--VLEHGDT 111 (405)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-CCSEEECCCSSHHHHHHHHHHH--HCCTTCE
T ss_pred CCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHh-CCCcceeeccCchHHHHHHHHH--hcCCCCE
Confidence 468888887776643 11 12221 122222234444555 4444332 46899999999883 2345678
Q ss_pred EEEEeCCCCCCchhH--HHhcCCCCccCCCCCCCCCCCCCCCceEEccCC------CHHHHHHHHhcCCCCeEEEEEccc
Q 011959 184 IIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------DVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 184 ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
|+..+...-|+.... ....|. ..+.+.++++ |.++++++++++ ++++||+-..
T Consensus 112 im~l~l~~GGHlshg~~~~~~g~-----------------~~~~~~y~~d~~~~~ID~d~l~~~a~~~--kPklIi~G~S 172 (405)
T d1kl1a_ 112 VLGMNLSHGGHLTHGSPVNFSGV-----------------QYNFVAYGVDPETHVIDYDDVREKARLH--RPKLIVAAAS 172 (405)
T ss_dssp EEEECGGGTCCGGGTCTTSHHHH-----------------HSEEEEECBCTTTCSBCHHHHHHHHHHH--CCSEEEECCS
T ss_pred EEEeecccccccccCccccccce-----------------EEEEEEeccchhcccccHHHHHHHHHhh--CcceEEeccc
Confidence 888765433322110 000000 0122333332 899999998876 5677887553
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCceee--hhhhcCCCcceEEEEecHHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDI 331 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~~i 331 (474)
.- -...+ +++++++|++.|++|++|=+| +|+ -.| .+. +-+.. .|++| .-|+|.| -|-|.++.++++
T Consensus 173 ~y--~r~~d----~~~~reIad~vga~l~~D~aH~~GLIa~g-~~~-~P~~~-aDvvt~tThKtlrG-Prgg~I~~~~~~ 242 (405)
T d1kl1a_ 173 AY--PRIID----FAKFREIADEVGAYLMVDMAHIAGLVAAG-LHP-NPVPY-AHFVTTTTHKTLRG-PRGGMILCQEQF 242 (405)
T ss_dssp SC--CSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTT-SSC-CSTTT-CSEEEEESSSTTCC-CSCEEEEECHHH
T ss_pred cc--ccccC----hHHHHHHHhhhCCEEecchhhHhhhhhhh-hcC-Chhhh-hhheeccccccccC-CCCceEEecchh
Confidence 21 12234 999999999999999999999 777 333 221 11222 47775 5699974 477888899988
Q ss_pred HHhhcCCCCcccccCCCCChHHHHHHH-HHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee--eceeEE
Q 011959 332 MEMVAPAGPMYQAGTLSGNPLAMTAGI-HTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY--ISGMFG 405 (474)
Q Consensus 332 ~~~~~~~~~~~~~~t~~~~~~~~aaa~-aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~--~g~~~~ 405 (474)
.+.+.. ..+- +..+++-....|++ .++..... .++.+++.++.+.|.+.|.+.+ +.. +.+ ...++.
T Consensus 243 ~~~i~~--avfP-g~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G----~~v-v~ggTd~H~vl 314 (405)
T d1kl1a_ 243 AKQIDK--AIFP-GIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEG----FTL-VSGGTDNHLLL 314 (405)
T ss_dssp HHHHHH--HHTT-TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT----CEE-GGGSCSSSEEE
T ss_pred HHHHHh--hhCc-ccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCC----cee-ecCCCccceee
Confidence 887763 1221 22233333333333 33444322 4577778888888888887653 221 111 233556
Q ss_pred EEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------CcceEE------ecCCcHHHHHHHHHHHHH
Q 011959 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFT------SLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------~~~~~~------~~~~t~e~i~~~l~~l~~ 469 (474)
+++..... ......+.|.+.||.+.... ...+|+ .....++|++++.+.|.+
T Consensus 315 vdl~~~~~------------~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~ 382 (405)
T d1kl1a_ 315 VDLRPQQL------------TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGL 382 (405)
T ss_dssp EECGGGTC------------CHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccccccCC------------cHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHH
Confidence 65532111 11334455666799886321 124676 256789999999999998
Q ss_pred HHh
Q 011959 470 VLR 472 (474)
Q Consensus 470 ~~~ 472 (474)
+++
T Consensus 383 ~l~ 385 (405)
T d1kl1a_ 383 VLK 385 (405)
T ss_dssp HHT
T ss_pred HHh
Confidence 875
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=3.8e-10 Score=107.97 Aligned_cols=317 Identities=8% Similarity=-0.075 Sum_probs=154.3
Q ss_pred CCHHHHHHHHHHHHhcC--CC-----CC-C---CHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHhHhhcCCc
Q 011959 116 ADDQVLAALGETMKKGT--SF-----GA-P---CLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRE 182 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~--~~-----~~-~---~~~~~~la~~l~~~~~~--~~~v~~~~sGseA~~~al~~ar~~~~~~ 182 (474)
-+++|++|+.+++.+.. +. +. . .++..+..+.|++.+.. .+.|+|++|++++++.+.... ...+++
T Consensus 12 ~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~-~~~~~~ 90 (360)
T d1bjna_ 12 LPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLN-ILGDKT 90 (360)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-HCTTCC
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhc-cccccc
Confidence 37999999999875421 11 10 1 24466788888888863 336888877777666555421 334455
Q ss_pred EEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcc
Q 011959 183 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 262 (474)
Q Consensus 183 ~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i 262 (474)
.+++....+.+.....+ ....+..........+ ...+.+.+++.+... .+..+|.. ..+.+|..
T Consensus 91 ~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~-~~~v~v~~--~~~~t~~~ 154 (360)
T d1bjna_ 91 TADYVDAGYWAASAIKE-AKKYCTPNVFDAKVTV------------DGLRAVKPMREWQLS-DNAAYMHY--CPNETIDG 154 (360)
T ss_dssp EEEEEESSHHHHHHHHH-HTTTSEEEEEECEEEE------------TTEEEECCGGGCCCC-SSCSCEEE--CSEETTTT
T ss_pred ccceecccchhhhhHHH-HhhcCccceeeccccC------------CCcchhhhhhhhccC-CceeEEEe--cccccccC
Confidence 55555444433222222 1111110000000000 000222223333321 22333333 33445666
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCc-
Q 011959 263 APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM- 341 (474)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~- 341 (474)
.+..+ + .++.+++++++|-+++.. ....+..++..++.+.+|.++++...+.++.++...+........
T Consensus 155 ~~~~~----i--~~~~~~~~v~vDa~~~~~----~~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (360)
T d1bjna_ 155 IAIDE----T--PDFGADVVVAADFSSTIL----SRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSIL 224 (360)
T ss_dssp EECCC----C--CCCCTTCCEEEECTTTTT----SSCCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGG
T ss_pred ccccc----e--ecccccceeeeeeecccc----ceeeeeccceeEEEEcccccccCCCceeEeeehhhhhccccCCcch
Confidence 65332 3 357789999999877421 112233445567778999998655566666655433222111000
Q ss_pred -------ccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeE-----EeeeceeEEEEEe
Q 011959 342 -------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-----GGYISGMFGFFFT 409 (474)
Q Consensus 342 -------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----v~~~g~~~~i~~~ 409 (474)
.........+.....+.............+...++.......+.+.......... .+.. ....|.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~-~v~~f~~- 302 (360)
T d1bjna_ 225 DYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSR-MNVPFQL- 302 (360)
T ss_dssp CHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCS-SEEEEEE-
T ss_pred hhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccc-eEEEEEc-
Confidence 0111122233333333333222222333333333333333333332222221110 1111 1222333
Q ss_pred cCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++......+...|.++||.+..+. .+.+|++ ..+|+|||+++++.|++..++
T Consensus 303 ------------~~~~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~~ 358 (360)
T d1bjna_ 303 ------------ADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR 358 (360)
T ss_dssp ------------SSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------CCcccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 333344678888999999887652 2347886 456999999999999997653
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.84 E-value=1.2e-07 Score=91.06 Aligned_cols=313 Identities=16% Similarity=0.091 Sum_probs=163.7
Q ss_pred CCHHHHHHHHHHHHh-cC-------CCC---CCCHHHHHHHHHHHhhCC-C-CCe--EEEeCCHHHHHHHHHHHhHhhc-
Q 011959 116 ADDQVLAALGETMKK-GT-------SFG---APCLLENVLAEMVISAVP-S-IEM--VRFVNSGTEACMGVLRLARAFT- 179 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~-~~-------~~~---~~~~~~~~la~~l~~~~~-~-~~~--v~~~~sGseA~~~al~~ar~~~- 179 (474)
.+|.|++++...+.+ .. .|+ +..+.+.-..++..+.|. . .++ =+=..||+.||.++.. ++.
T Consensus 39 ~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~---all~ 115 (463)
T d2a7va1 39 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYT---ALLQ 115 (463)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHH---HHCC
T ss_pred CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHH---HHcC
Confidence 467777777665543 11 111 134555444556666774 2 221 1335689999999988 444
Q ss_pred CCcEEEEEeCCCCCCchhH-------HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE
Q 011959 180 GRERIIKFEGCYHGHADPF-------LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~-------~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
++++|+.++...=|+.... ...++.......+...+ .... =|.++++++.+++ ++++||+
T Consensus 116 pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~--------~~~~---IDyd~~~~~a~~~--kPklIi~ 182 (463)
T d2a7va1 116 PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP--------KTGL---IDYNQLALTARLF--RPRLIIA 182 (463)
T ss_dssp SCEECCC-------------------------------CCBCT--------TTCS---BCHHHHHHHHHHH--CCSEEEE
T ss_pred CCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccC--------CCCc---CcHHHHHHHHhhc--CCceEEe
Confidence 4667776653322221110 00011100000000000 0000 1899999988875 5677887
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCceee--hhhhcCCCcceEEEEec
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGR 328 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~ 328 (474)
-...- -...+ +++++++|++.|++|++|=.| +|+ -.| .+. +-+.. -|++| .-|+|.| -|-|.++.+
T Consensus 183 G~S~y--~r~~d----~~~~reIad~vga~l~~D~aH~aGLIA~g-~~~-sP~~~-aDvvt~tTHKTlrG-PrgGiIl~~ 252 (463)
T d2a7va1 183 GTSAY--ARLID----YARMREVCDEVKAHLLADMAHISGLVAAK-VIP-SPFKH-ADIVTTTTHKTLRG-ARSGLIFYR 252 (463)
T ss_dssp CCSSC--CSCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTT-SSC-CGGGT-CSEEEEESSGGGCS-CSCEEEEEE
T ss_pred ccccc--ccccC----HHHHHHHhhcccceEEechhhhhHHhhhh-hhc-Chhhh-hhhhhchhhhhhcC-CCceEEEEc
Confidence 54221 12344 999999999999999999999 677 333 221 11222 37775 5699974 466666766
Q ss_pred H---------------HHHHhhcCCCCcccccCCCCChHHHHHHH-HHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhh
Q 011959 329 R---------------DIMEMVAPAGPMYQAGTLSGNPLAMTAGI-HTLKRLKE---PGTYEYLNKITGELTQGIIDAGK 389 (474)
Q Consensus 329 ~---------------~i~~~~~~~~~~~~~~t~~~~~~~~aaa~-aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~ 389 (474)
+ ++.+.+.. ..+- +..+++-....|++ .++....+ .++.+++.++.+.|.+.|.+.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~i~~--avFP-g~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~ 329 (463)
T d2a7va1 253 KGVKAVDPKTGREIPYTFEDRINF--AVFP-SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGY 329 (463)
T ss_dssp CSEEEEETTTEEEEECCCHHHHHH--HHTT-TTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccccccCccchhHHHHHhhh--hcCc-ccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5 34444431 1111 12233333333333 33444333 46777778888888888876532
Q ss_pred hcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---------CcceEE------ecC
Q 011959 390 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFT------SLA 454 (474)
Q Consensus 390 ~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------~~~~~~------~~~ 454 (474)
+. +. -.-...++.+++.... .......+.|.+.||.+.... ...+|+ ...
T Consensus 330 ~v--v~-ggTdnHlvlvdl~~~~------------~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG 394 (463)
T d2a7va1 330 SL--VS-GGTDNHLVLVDLRPKG------------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQ 394 (463)
T ss_dssp EE--GG-GSCSSSEEEEECTTTT------------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTT
T ss_pred ee--ec-CCCCCceeeeeccccC------------CCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCC
Confidence 11 10 0011234455543211 112455567778899886331 123676 246
Q ss_pred CcHHHHHHHHHHHHHHHh
Q 011959 455 HSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 455 ~t~e~i~~~l~~l~~~~~ 472 (474)
..++|++++.+.|.+++.
T Consensus 395 ~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 395 FREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 788999999998888764
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.81 E-value=2e-07 Score=89.89 Aligned_cols=313 Identities=18% Similarity=0.159 Sum_probs=168.2
Q ss_pred CCHHHHHHHHHHHHhcC-------C-CCCC---CHHHHHHHHHHHhhCCCCC----eE-EEeCCHHHHHHHHHHHhHhhc
Q 011959 116 ADDQVLAALGETMKKGT-------S-FGAP---CLLENVLAEMVISAVPSIE----MV-RFVNSGTEACMGVLRLARAFT 179 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~-------~-~~~~---~~~~~~la~~l~~~~~~~~----~v-~~~~sGseA~~~al~~ar~~~ 179 (474)
.+|.|++++...+.+-. . |++. .+.+.-..++..+.|. .+ .+ +=..||+.||.++... ...
T Consensus 43 ~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~-~~~~~~~anVqp~SGs~An~av~~a--ll~ 119 (470)
T d1rv3a_ 43 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYG-LDPQCWGVNVQPYSGSPANFAVYTA--LVE 119 (470)
T ss_dssp CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTT-CCTTTEEEECCCSSHHHHHHHHHHH--HTC
T ss_pred CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhC-CChhhccccccccCCccHHHHHHHH--hcC
Confidence 46888888776664311 1 2221 2333333455566774 32 22 2245899999999983 234
Q ss_pred CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC------CHHHHHHHHhcCCCCeEEEEEc
Q 011959 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------DVSALENLFENNKGEIAAIILE 253 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~a~vi~e 253 (474)
++++|+.++-..=|+...........+. ..+ ...+.+.++.+ |.++++++.+++ ++++||+-
T Consensus 120 pgD~im~~~l~~GGHlshg~~~~~~~~~------~~~----~~~~~~~y~v~~~~~~IDyd~l~~~a~~~--kPklIi~G 187 (470)
T d1rv3a_ 120 PHGRIMGLDLPDGGHLTHGFMTDKKKIS------ATS----IFFESMAYKVNPDTGYIDYDRLEENARLF--HPKLIIAG 187 (470)
T ss_dssp TTCEEEEECGGGTCCGGGCCBCSSCBCS------HHH----HHSEEEEECBCTTTCSBCHHHHHHHHHHH--CCSEEEEC
T ss_pred CCCeEeeeccccCCcccccccccCCCcc------ccc----ceeEeeEEEEecccCcccHHHHHHHHHhh--CcceEeec
Confidence 5677777753322221110000000000 000 00112222222 789999988865 56778875
Q ss_pred cccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCceee--hhhhcCCCcceEEEEecH
Q 011959 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRR 329 (474)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~ 329 (474)
.... -...+ +++++++|++.|++|++|=+| +|+ -.|. +. +-+.. -|++| .-|+|.| -|-|.++.++
T Consensus 188 ~S~y--~r~~d----~~~~reIad~vga~l~~D~aH~aGLIA~g~-~~-sPl~~-aDvvt~tTHKtlrG-PrgGiI~~~~ 257 (470)
T d1rv3a_ 188 TSCY--SRNLD----YGRLRKIADENGAYLMADMAHISGLVVAGV-VP-SPFEH-CHVVTTTTHKTLRG-CRAGMIFYRR 257 (470)
T ss_dssp CSSC--CSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTS-SC-CGGGT-CSEEEEESSGGGCC-CSCEEEEEEC
T ss_pred hhhc--cccCC----HHHHHHHHhccCCeEEecchhhhhhccccc-cC-Chhhe-eeeeeeehhhhccC-CcceEEEEcc
Confidence 4321 22344 999999999999999999999 777 3332 11 11222 37774 5699974 4566666654
Q ss_pred H---------------HHHhhcCCCCcccccCCCCChHHHHHHH-HHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 330 D---------------IMEMVAPAGPMYQAGTLSGNPLAMTAGI-HTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 330 ~---------------i~~~~~~~~~~~~~~t~~~~~~~~aaa~-aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
+ +.+.+.. ..+- +..+++-....|++ .++..... .++.+++.++.+.|.+.|.+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~i~~--avFP-g~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~--- 331 (470)
T d1rv3a_ 258 GVRSVDPKTGKEILYNLESLINS--AVFP-GLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL--- 331 (470)
T ss_dssp SBCC-------CCBCCHHHHHHH--HHTT-TTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred ccccccccccchhHHHHHHHHhh--hcCc-cccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 3 4454542 1111 22233334444444 34555443 456666777777777777664
Q ss_pred cCCeeEEe-eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---------CcceEE------ecC
Q 011959 391 AGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFT------SLA 454 (474)
Q Consensus 391 ~~~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------~~~~~~------~~~ 454 (474)
++..... -...++.+++.... .....+.+.|.+.||.+.... ...+|+ +..
T Consensus 332 -G~~v~~ggTdnHlvlvdl~~~g------------~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG 398 (470)
T d1rv3a_ 332 -GYKIVTGGSDNHLILVDLRSKG------------TDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRG 398 (470)
T ss_dssp -TCEEGGGSCSSSEEEEEGGGGT------------CCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTT
T ss_pred -CceeccCCCCCceEEEeecccC------------CcHHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCC
Confidence 3221111 12334555543211 112345566667899875321 123676 257
Q ss_pred CcHHHHHHHHHHHHHHHh
Q 011959 455 HSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 455 ~t~e~i~~~l~~l~~~~~ 472 (474)
..++|++++.+.|.++++
T Consensus 399 ~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 399 LLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 789999999999888774
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.77 E-value=1.4e-06 Score=85.15 Aligned_cols=316 Identities=17% Similarity=0.173 Sum_probs=167.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCC---C----HHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcC------
Q 011959 115 HADDQVLAALGETMKKGTSFGAP---C----LLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTG------ 180 (474)
Q Consensus 115 ~~~p~v~~a~~~~~~~~~~~~~~---~----~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~------ 180 (474)
|=+|.|.+.+.+.....+.|. | + +..-++-..+++++ +.|-+-. ...|+.|...|+.+++++++
T Consensus 76 hy~P~v~~~~~~~~TaYTPYQ-PaEiSQG~LQalfEfQtmi~eLT-GMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~ 153 (471)
T d1wyub1 76 KYNPKLHEEAARLFADLHPYQ-DPRTAQGALRLMWELGEYLKALT-GMDAITLEPAAGAHGELTGILIIRAYHEDRGEGR 153 (471)
T ss_dssp CCCCHHHHHHHHTTSSCCTTS-CGGGCHHHHHHHHHHHHHHHHHH-TCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccCcchhhhHHHHHhccCCCC-CHHHHHHHHHHHHHHHHHHHHHh-CCCccccccchHHHHHHHHHHHHHHHhhhccccc
Confidence 446788877764322233332 2 1 12346777777777 6664432 24688888777777766531
Q ss_pred CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCC
Q 011959 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (474)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (474)
...++...+.+|..........+..+....... .+ ..|.+.++.... ++++++++..++..+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------~~~~~~~~~~~~---~~~a~v~v~~p~~~g~ 216 (471)
T d1wyub1 154 TRRVVLVPDSAHGSNPATASMAGYQVREIPSGP-EG-------------EVDLEALKRELG---PHVAALMLTNPNTLGL 216 (471)
T ss_dssp TCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT-TS-------------SBCHHHHHHHCS---TTEEEEEECSSCTTSC
T ss_pred ccccccCCcccccceeeeeecccceeecccccc-cc-------------cccchhhhhhhh---ccccceeeccCCCccc
Confidence 233455555566544333333232111111000 00 115666665543 5788888877766554
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceee--hhhhcC-----CCcceEEEEecHHHHH
Q 011959 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIG-----GGLPVGAYGGRRDIME 333 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t--~sK~l~-----~G~~iG~~~~~~~i~~ 333 (474)
.... .+.+.++++++|.++++|-+-...-.+ ......++ -|+++ .++.|| ||--+|++..+++++.
T Consensus 217 ~e~~----~~~~~~~~h~~g~~~~~~~~~~~~~~~-l~~p~~~g--~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R 289 (471)
T d1wyub1 217 FERR----ILEISRLCKEAGVQLYYDGANLNAIMG-WARPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAP 289 (471)
T ss_dssp CCTT----HHHHHHHHHHHTCEEEEEGGGGGGTTT-TCCHHHHT--CSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGG
T ss_pred ccch----hhhhHHHHHhccccccccccchhhhhh-ccccCccc--ccccccccccccccccccccccccceeehhhhhc
Confidence 4433 778999999999988887544211000 00011111 13332 345554 3345899999998876
Q ss_pred hhcCC-----C--------Cccc---ccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCe
Q 011959 334 MVAPA-----G--------PMYQ---AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (474)
Q Consensus 334 ~~~~~-----~--------~~~~---~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (474)
.+-.. . +-.| -...+++.+.+.++...+..+-. .++-+...++..|++++|.+.. +.+.
T Consensus 290 ~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G--~~~~ 367 (471)
T d1wyub1 290 YLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKG--YRVP 367 (471)
T ss_dssp GCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CBCS
T ss_pred cCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhcC--ceec
Confidence 65310 0 0000 11123334444444444544433 4566777788899999886532 1111
Q ss_pred eEEeeeceeE-EEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----CcceEEe--cCCcHHHHHHHHHH
Q 011959 395 ICGGYISGMF-GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTS--LAHSSDDIQHTITA 466 (474)
Q Consensus 395 ~~v~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~~~--~~~t~e~i~~~l~~ 466 (474)
..+.++ -|.+.. +......++.+.|+++|++-.... .+.+.++ =.+|++|||+++++
T Consensus 368 ----~~~~ff~EFvv~~-----------~~~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv~a 432 (471)
T d1wyub1 368 ----YDGPSMHEFVAQP-----------PEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEA 432 (471)
T ss_dssp ----SCSSCCSCEEEBC-----------STTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHH
T ss_pred ----cCcceeeEEeecC-----------CCCCCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHHHH
Confidence 112221 111111 111113568899999998643211 2234443 36799999999999
Q ss_pred HHHHHhh
Q 011959 467 AEKVLRQ 473 (474)
Q Consensus 467 l~~~~~~ 473 (474)
|++++++
T Consensus 433 L~~i~~e 439 (471)
T d1wyub1 433 MGALLKK 439 (471)
T ss_dssp HHHHHTS
T ss_pred HHHHHHh
Confidence 9999876
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.71 E-value=3.9e-07 Score=88.12 Aligned_cols=282 Identities=16% Similarity=0.165 Sum_probs=155.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHh----cCCCCccCCCCCC
Q 011959 140 LENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK----AGSGVATLGLPDS 214 (474)
Q Consensus 140 ~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~----~g~~~~~~~~~~~ 214 (474)
..-++-++|++.. +.+.+-+ ...|+.|...++.+++.+++++++++.+. -|..+...+.. .|..
T Consensus 109 ~l~e~q~~l~elt-Gmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~-~~p~~~~v~~t~a~~~g~~--------- 177 (437)
T d1wyua1 109 ATFEYQTMIAELA-GLEIANASMYDGATALAEGVLLALRETGRMGVLVSQG-VHPEYRAVLRAYLEAVGAK--------- 177 (437)
T ss_dssp HHHHHHHHHHHHH-TSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETT-SCHHHHHHHHHHHHHTTCE---------
T ss_pred HHHHHHHHHHHhh-CCCccccCchHHHHHHHHHHHHHHhhhcccccccccc-cChHHhhhhhhhcccceee---------
Confidence 3457888888887 5665533 45799999999999999999999887654 44444443322 2322
Q ss_pred CCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCccc
Q 011959 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 294 (474)
Q Consensus 215 ~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~ 294 (474)
++.++.++... .+.+..+++++|++..+ |..|.+.. ++++.+++++.|.++|.|--...+
T Consensus 178 ----------vv~v~~~~~~~---~~~~~~~~~Aavmi~~P-nt~G~~ed----~~~i~~~~h~~G~l~~~~ad~~al-- 237 (437)
T d1wyua1 178 ----------LLTLPLEGGRT---PLPEVGEEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLSL-- 237 (437)
T ss_dssp ----------EEEECCBTTBC---CCCCCCTTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTGG--
T ss_pred ----------EEeeecccccc---hhhhhccceeEEEEccc-cccccccc----hHHHHHHhhhccceEEeeechhhh--
Confidence 33333322110 01123468898888765 44577754 889999999999998877443211
Q ss_pred CCCccccccCCCCceee-hhhhcC-----CCcceEEEEecHHHHHhhcCC----------CCcc----------------
Q 011959 295 AYGGAQEYFGVTPDLTT-LGKIIG-----GGLPVGAYGGRRDIMEMVAPA----------GPMY---------------- 342 (474)
Q Consensus 295 g~~~~~~~~g~~pdi~t-~sK~l~-----~G~~iG~~~~~~~i~~~~~~~----------~~~~---------------- 342 (474)
+..-....+|. |+++ -+|.|| ||-..|++.+++++...+-.. +..+
T Consensus 238 ~~l~~Pg~~Ga--Di~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrReka 315 (437)
T d1wyua1 238 GVLKPPGAYGA--DIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKA 315 (437)
T ss_dssp GTBCCHHHHTC--SEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGS
T ss_pred hcccccccccc--ceEeeccceeccccCCCcCccccccccchhhccccccccccccccCCcccceeeccccccccccccc
Confidence 11111122343 5552 145443 344578889998887655310 0000
Q ss_pred cccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccc
Q 011959 343 QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 419 (474)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~ 419 (474)
.....+.+.+.+..+...+..+-. .+.-++...+..++.++|.++. ++. .+.....|--+.+..+
T Consensus 316 tsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~---g~~-~~~~~~~f~ef~v~~~-------- 383 (437)
T d1wyua1 316 KSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVP---GVR-PFTPKPFFNEFALALP-------- 383 (437)
T ss_dssp SCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCE-ECSCSSBCSEEEEECS--------
T ss_pred ccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcC---Cee-ccCCCCeeeEEEEECC--------
Confidence 011123333433333344443332 3344556666777777776541 111 1111111211212111
Q ss_pred cccchHHHHHHHHHHHHCCeEeccc-----CCcceEEe--cCCcHHHHHHHHHHHHHHH
Q 011959 420 KKSETTKFARFYRGMLEEGVYFAPS-----QFEAGFTS--LAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~Gv~v~~~-----~~~~~~~~--~~~t~e~i~~~l~~l~~~~ 471 (474)
.....+.++|+++|+..... ....+.+. =..|+++||+++++|++++
T Consensus 384 -----~~~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 384 -----KDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp -----SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred -----CCHHHHHHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 11357889999999864221 12233444 3578999999999999874
|