Citrus Sinensis ID: 012033

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470--
MNDYSYEDFDLPEAFQPNEASPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPYIIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDAAHGEEAYALWGDGEKLPKTPRLRIPPRIPSICCRLI
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHcccccccccccccccccEEEEcHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccHHHHcHHccccccccccccccccccccccccccccccc
cccEcccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccccccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccEEcccccEEEEHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHcHHHHHHHcccccccccccccccccccccccccc
mndysyedfdlpeafqpneaspwwnnkadnAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSaliplmgkpdvalsekyllepsgdgkvpmaDYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTfsytigaftiwgggflepyiIDYAGGFVIHlssgvsgftaaywvgprhsrdrhnfppnniiHMLGGAGflwlgwtgfnggsplVAGRIAALAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVcitpgagivepwGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSgllakpnlltmmygpdkhgpglfySLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNlrmnaddleigddaahgeeayalwgdgeklpktprlrippripsiccrli
mndysyedFDLPEAFQPNEASPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPYIIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDAAHGEEAYalwgdgeklpktprlrippripsiccrli
MNDYSYEDFDLPEAFQPNEASPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPYIIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAgilggllsgllAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDAAHGEEAYALWGDGEKLPKTprlrippripsiccrli
********************SPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPYIIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDAAHGEEAYALWGDGEKL*****LRIPPRIPSICC***
********FDLPEAFQPNEASPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPYIIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDAAHGEEAYALWG**********************RL*
MNDYSYEDFDLPEAFQPNEASPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPYIIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDAAHGEEAYALWGDGEKLPKTPRLRIPPRIPSICCRLI
**********LPEAFQP**ASPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPYIIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDAAHGEEAYALWGDGEK*********************
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MNDYSYEDFDLPEAFQPNEASPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPYIIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDAAHGEEAYALWGDGEKLPKTPRLRIPPRIPSICCRLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query472 2.2.26 [Sep-21-2011]
Q84KJ6498 Ammonium transporter 3 me yes no 0.947 0.897 0.583 1e-152
Q69T29480 Ammonium transporter 3 me no no 0.915 0.9 0.580 1e-146
Q851M9479 Ammonium transporter 3 me no no 0.917 0.903 0.590 1e-143
Q8S230501 Ammonium transporter 2 me no no 0.923 0.870 0.566 1e-140
Q84KJ7486 Ammonium transporter 2 me no no 0.906 0.880 0.585 1e-140
Q9M6N7475 Ammonium transporter 2 OS yes no 0.921 0.915 0.559 1e-139
Q8S233497 Ammonium transporter 2 me no no 0.923 0.877 0.556 1e-133
O66515423 Ammonia channel OS=Aquife yes no 0.841 0.938 0.346 1e-59
O26759412 Putative ammonium transpo yes no 0.709 0.813 0.375 2e-58
Q10CV4299 Putative ammonium transpo no no 0.474 0.749 0.474 2e-53
>sp|Q84KJ6|AMT31_ORYSJ Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  539 bits (1388), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 279/478 (58%), Positives = 344/478 (71%), Gaps = 31/478 (6%)

Query: 5   SYEDFDLPEAFQPNE-ASPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVN 63
           S + F++  A+QP+  A P W NK DNAWQ+ + T+V +QSVPGLVILYGS+VKKKWAVN
Sbjct: 2   SGDAFNMSVAYQPSGMAVPEWLNKGDNAWQMISATLVGMQSVPGLVILYGSIVKKKWAVN 61

Query: 64  SAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALSEKYLLEPS----------- 112
           SAFMA YAFA V +CWV W + M+FG  L+P  GK   AL + +LL  +           
Sbjct: 62  SAFMALYAFAAVWLCWVTWGYNMSFGHKLLPFWGKARPALGQSFLLAQAVLPQTTQFYKG 121

Query: 113 ---GDGKV---------PMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTF 160
               D  V         PMA  V+FQ  FAAIT++LLAGSLLGRMN  AWM+FVPLWLTF
Sbjct: 122 GGGADAVVETPWVNPLYPMATMVYFQCVFAAITLILLAGSLLGRMNIKAWMLFVPLWLTF 181

Query: 161 SYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNI 219
           SYT+GAF++WGGGFL  + ++DY+GG+VIHLSSGV+GFTAAYWVGPR ++DR  FPPNN+
Sbjct: 182 SYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGVAGFTAAYWVGPRSTKDRERFPPNNV 241

Query: 220 IHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLLVWVSLDMIVYKKSSV 279
           + ML GAG LW+GW GFNGG P  A   ++LA++NT++CAATSLLVW  LD+I +KK SV
Sbjct: 242 LLMLTGAGILWMGWAGFNGGDPYSANIDSSLAVLNTNICAATSLLVWTCLDVIFFKKPSV 301

Query: 280 IGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGV 339
           IGAVQGMITGLVCITPGAG+V+ W A++MG +SGSIPW+TMMV+H+R    Q VDDTLGV
Sbjct: 302 IGAVQGMITGLVCITPGAGLVQGWAAIVMGILSGSIPWFTMMVVHKRSRLLQQVDDTLGV 361

Query: 340 FHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGT 399
           FHTHAVAG LGG  +GL A+P +L  ++ P  +  G FY    G +     QF  Q+ G 
Sbjct: 362 FHTHAVAGFLGGATTGLFAEP-VLCSLFLPVTNSRGAFYPGRGGGL-----QFVRQVAGA 415

Query: 400 AFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDAAHGEEAYALWGDGEKLPKTPR 457
            FI  WN +VTSL+C+ V  +V LRM  ++L IGDDA HGEEAYALWGDGEK   T  
Sbjct: 416 LFIICWNVVVTSLVCLAVRAVVPLRMPEEELAIGDDAVHGEEAYALWGDGEKYDSTKH 473
Involved in ammonium transport.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q69T29|AMT33_ORYSJ Ammonium transporter 3 member 3 OS=Oryza sativa subsp. japonica GN=AMT3-3 PE=2 SV=1 Back     alignment and function description
>sp|Q851M9|AMT32_ORYSJ Ammonium transporter 3 member 2 OS=Oryza sativa subsp. japonica GN=AMT3-2 PE=2 SV=1 Back     alignment and function description
>sp|Q8S230|AMT22_ORYSJ Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2 Back     alignment and function description
>sp|Q84KJ7|AMT21_ORYSJ Ammonium transporter 2 member 1 OS=Oryza sativa subsp. japonica GN=AMT2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9M6N7|AMT2_ARATH Ammonium transporter 2 OS=Arabidopsis thaliana GN=AMT2 PE=1 SV=2 Back     alignment and function description
>sp|Q8S233|AMT23_ORYSJ Ammonium transporter 2 member 3 OS=Oryza sativa subsp. japonica GN=AMT2-3 PE=2 SV=1 Back     alignment and function description
>sp|O66515|AMT_AQUAE Ammonia channel OS=Aquifex aeolicus (strain VF5) GN=amt PE=1 SV=1 Back     alignment and function description
>sp|O26759|Y663_METTH Putative ammonium transporter MTH_663 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_663 PE=3 SV=1 Back     alignment and function description
>sp|Q10CV4|AMT41_ORYSJ Putative ammonium transporter 4 member 1 OS=Oryza sativa subsp. japonica GN=AMT4-1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query472
255579610469 ammonium transporter, putative [Ricinus 0.989 0.995 0.762 0.0
449434456473 PREDICTED: ammonium transporter 3 member 0.991 0.989 0.714 0.0
356502083490 PREDICTED: ammonium transporter 3 member 0.993 0.957 0.703 0.0
449491446471 PREDICTED: LOW QUALITY PROTEIN: ammonium 0.987 0.989 0.706 0.0
147811857469 hypothetical protein VITISV_039702 [Viti 0.966 0.972 0.714 0.0
359497683446 PREDICTED: ammonium transporter 3 member 0.938 0.993 0.728 0.0
224133946431 ammonium transporter [Populus trichocarp 0.913 1.0 0.798 0.0
357517869505 Ammonium transporter 3 member [Medicago 0.963 0.900 0.705 0.0
296081446415 unnamed protein product [Vitis vinifera] 0.872 0.992 0.727 1e-178
147856666482 hypothetical protein VITISV_020759 [Viti 0.949 0.929 0.625 1e-163
>gi|255579610|ref|XP_002530646.1| ammonium transporter, putative [Ricinus communis] gi|223529819|gb|EEF31754.1| ammonium transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/468 (76%), Positives = 401/468 (85%), Gaps = 1/468 (0%)

Query: 1   MNDYSYEDFDLPEAFQPNEASPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKW 60
           MN    E+F LP   +P+E+SP WN+KADNAWQLTATTMVCLQSVPGLVILYGSMVKKKW
Sbjct: 1   MNYTFQENFSLPSGLRPDESSPEWNSKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKW 60

Query: 61  AVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMA 120
           AVNSAFMAFYAFA VLVCWVLW H M+FG+ + PL+GKP+VAL + ++L  S  G VPMA
Sbjct: 61  AVNSAFMAFYAFAAVLVCWVLWGHHMSFGTKISPLVGKPNVALPQHFVLSRSKLGHVPMA 120

Query: 121 DYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPYII 180
           DYV +QFAFAAITV+LLAGSLLGRMN YAWM+FVPLWLTFSYT+GAF+IWGGGFLE +II
Sbjct: 121 DYVLYQFAFAAITVILLAGSLLGRMNIYAWMLFVPLWLTFSYTVGAFSIWGGGFLEKHII 180

Query: 181 DYAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGS 240
           DYAGG+VIHLSSGV+GFTAAYWVG RHS DR +FPPNNIIHMLGGAGFLWLGWTGFNGGS
Sbjct: 181 DYAGGYVIHLSSGVAGFTAAYWVGSRHSHDRQHFPPNNIIHMLGGAGFLWLGWTGFNGGS 240

Query: 241 PLVAGRIAALAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIV 300
           P  AG +A+LA+VNTHLC ATSLLVWVS DMIVYKKSSVIGAVQGMITGLVCITPGAGIV
Sbjct: 241 PFAAGLVASLAVVNTHLCTATSLLVWVSFDMIVYKKSSVIGAVQGMITGLVCITPGAGIV 300

Query: 301 EPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKP 360
           EPW A LMG MSGS+ WYTMMVLHRR  FFQSVDDTL VFHTHAVAG+LGG+LSGL AKP
Sbjct: 301 EPWAAFLMGGMSGSVTWYTMMVLHRRSAFFQSVDDTLAVFHTHAVAGLLGGILSGLFAKP 360

Query: 361 NLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRL 420
           +LL MMY    +G GLFYSL NG+ + G KQ   QI G AF+TAWN ++TSLICI +SR+
Sbjct: 361 SLLMMMYPQSTYGTGLFYSLTNGRHQDGLKQMVSQIEGAAFVTAWNVVLTSLICILISRI 420

Query: 421 VNLRMNADDLEIGDDAAHGEEAYALWGDGEKLPKTPRLRIPPRIPSIC 468
           V+LR+  D LEIGDDA HGEEAYALWGDGE++P   R R+ P++PS C
Sbjct: 421 VDLRLPQDHLEIGDDAVHGEEAYALWGDGERMPNLYR-RLHPKLPSWC 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449434456|ref|XP_004135012.1| PREDICTED: ammonium transporter 3 member 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356502083|ref|XP_003519851.1| PREDICTED: ammonium transporter 3 member 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449491446|ref|XP_004158898.1| PREDICTED: LOW QUALITY PROTEIN: ammonium transporter 3 member 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147811857|emb|CAN68179.1| hypothetical protein VITISV_039702 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359497683|ref|XP_002270506.2| PREDICTED: ammonium transporter 3 member 1-like, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|224133946|ref|XP_002327718.1| ammonium transporter [Populus trichocarpa] gi|222836803|gb|EEE75196.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357517869|ref|XP_003629223.1| Ammonium transporter 3 member [Medicago truncatula] gi|355523245|gb|AET03699.1| Ammonium transporter 3 member [Medicago truncatula] Back     alignment and taxonomy information
>gi|296081446|emb|CBI18849.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856666|emb|CAN80314.1| hypothetical protein VITISV_020759 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query472
UNIPROTKB|Q84KJ7486 AMT2-1 "Ammonium transporter 2 0.906 0.880 0.567 1.8e-135
TAIR|locus:2042917475 AMT2 "ammonium transporter 2" 0.915 0.909 0.555 2.3e-133
TIGR_CMR|CPS_3995445 CPS_3995 "ammonium transporter 0.849 0.901 0.336 4.6e-57
TIGR_CMR|SPO_2093431 SPO_2093 "ammonium transporter 0.658 0.721 0.362 4.2e-53
TIGR_CMR|CHY_0073438 CHY_0073 "ammonium transporter 0.832 0.897 0.329 1.3e-52
POMBASE|SPCPB1C11.01497 amt1 "ammonium transporter Amt 0.845 0.802 0.314 3.5e-52
UNIPROTKB|P69681428 amtB "AmtB" [Escherichia coli 0.677 0.747 0.351 2.8e-50
ASPGD|ASPL0000057186478 mepA [Emericella nidulans (tax 0.849 0.838 0.315 2e-49
ASPGD|ASPL0000068402544 meaA [Emericella nidulans (tax 0.860 0.746 0.313 6.7e-49
TIGR_CMR|DET_1125408 DET_1125 "ammonium transporter 0.663 0.767 0.358 1.4e-48
UNIPROTKB|Q84KJ7 AMT2-1 "Ammonium transporter 2 member 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 1327 (472.2 bits), Expect = 1.8e-135, P = 1.8e-135
 Identities = 255/449 (56%), Positives = 319/449 (71%)

Query:    20 ASPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCW 79
             A P W NK DNAWQLTA+T+V +QS+PGLV+LYGS+VKKKWAVNSAFMA YA+A  L+ W
Sbjct:    13 AVPDWLNKGDNAWQLTASTLVGIQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASSLLVW 72

Query:    80 VLWAHQMAFGSALIPLMGKPDVALSEKYL-----LEPSGDGKVPMAD--Y-----VFFQF 127
             VL   +MAFG  L+P  GK  VAL++ YL     L  +  G +P  +  Y     V FQF
Sbjct:    73 VLVGFRMAFGDQLLPFWGKAGVALTQSYLVGRATLPATAHGAIPRTEPFYPEATLVLFQF 132

Query:   128 AFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGF 186
              FAAIT+VLLAGS+LGRMN  AWM F PLWL  SYT+GAF++WGGGFL  + +IDY+GG+
Sbjct:   133 EFAAITLVLLAGSVLGRMNIKAWMAFTPLWLLLSYTVGAFSLWGGGFLYRWGVIDYSGGY 192

Query:   187 VIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGR 246
             VIHLSSG++GFTAAYWVGPR   DR  F PNNI+ M+ G G LW+GW GFNGG+P  A  
Sbjct:   193 VIHLSSGIAGFTAAYWVGPRLKSDRERFSPNNILLMIAGGGLLWMGWAGFNGGAPYAANI 252

Query:   247 IAALAIVNTHLCAATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGAL 306
              A++A++NT++CAATSLL+W  LD+I ++K SVIGAVQGM+TGLVCITPGAG+V+ W A+
Sbjct:   253 AASVAVLNTNVCAATSLLMWTCLDVIFFRKPSVIGAVQGMMTGLVCITPGAGLVQTWAAV 312

Query:   307 LMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTHAVAXXXXXXXXXXXAKPNLLTMM 366
             +MG  +GS+PW+TMM+LH++      VDDTL VFHTHAVA           A P L ++ 
Sbjct:   313 VMGIFAGSVPWFTMMILHKKSALLMKVDDTLAVFHTHAVAGLLGGILTGLLATPELFSL- 371

Query:   367 YGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMN 426
                +   PGL  + + G    G KQ G Q+ G AF+ AWN +VT+ I + +   + LRM 
Sbjct:   372 ---ESTVPGLRGAFYGG----GIKQIGKQLGGAAFVIAWNLVVTTAILLGIGLFIPLRMP 424

Query:   427 ADDLEIGDDAAHGEEAYALWGDGEKLPKT 455
              + L IGDDAAHGEEAYALWGDGEK   T
Sbjct:   425 DEQLMIGDDAAHGEEAYALWGDGEKFDAT 453
GO:0005886 "plasma membrane" evidence=TAS
GO:0015696 "ammonium transport" evidence=IGI
TAIR|locus:2042917 AMT2 "ammonium transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3995 CPS_3995 "ammonium transporter" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2093 SPO_2093 "ammonium transporter" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0073 CHY_0073 "ammonium transporter" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
POMBASE|SPCPB1C11.01 amt1 "ammonium transporter Amt1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|P69681 amtB "AmtB" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
ASPGD|ASPL0000057186 mepA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000068402 meaA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1125 DET_1125 "ammonium transporter" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M6N7AMT2_ARATHNo assigned EC number0.55930.92160.9157yesno
Q9C0V1AMT1_SCHPONo assigned EC number0.30350.90670.8611yesno
P63520AMT_MYCBONo assigned EC number0.31640.91100.9014yesno
Q84KJ6AMT31_ORYSJNo assigned EC number0.58360.94700.8975yesno
O66515AMT_AQUAENo assigned EC number0.34670.84110.9385yesno
P41948MEP2_YEASTNo assigned EC number0.30180.86010.8136yesno
P63519AMT_MYCTUNo assigned EC number0.31640.91100.9014yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
TIGR00836403 TIGR00836, amt, ammonium transporter 1e-109
COG0004409 COG0004, AmtB, Ammonia permease [Inorganic ion tra 1e-106
pfam00909399 pfam00909, Ammonium_transp, Ammonium Transporter F 8e-75
PRK10666428 PRK10666, PRK10666, ammonium transporter; Provisio 4e-65
TIGR03644404 TIGR03644, marine_trans_1, probable ammonium trans 4e-28
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter Back     alignment and domain information 
 Score =  329 bits (847), Expect = e-109
 Identities = 146/422 (34%), Positives = 218/422 (51%), Gaps = 27/422 (6%)

Query: 30  NAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFG 89
            AW L A  +V     PG  +LY  +V+ K  +N        FA+  + W L+ + +AFG
Sbjct: 1   TAWLLIAAALVFFM-QPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFG 59

Query: 90  SALI--PLMGKPDVALSEKYLLEPSG-DGKVPMADYVFFQFAFAAITVVLLAGSLLGRMN 146
                   +G     L            G +P   +  FQ  FAAI   +++G++  RM 
Sbjct: 60  EDNPINGFIGTGGFGLKNFLYPGKISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMK 119

Query: 147 FYAWMIFVPLWLTFSYTIGAFTIWG-GGFLEPY-IIDYAGGFVIHLSSGVSGFTAAYWVG 204
           F A+++F  LW T  Y   A  +WG GG+L    ++D+AGG V+H+  GV+G  AA  +G
Sbjct: 120 FSAYLLFSVLWTTLVYPPVAHWVWGGGGWLYKLGVLDFAGGGVVHIVGGVAGLAAALVLG 179

Query: 205 PRHSRDRH--NFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATS 262
           PR  R        P+N+  ++ G   LW GW GFN GS L A   AA A VNT+L AA  
Sbjct: 180 PRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTAAYAAVNTNLAAAAG 239

Query: 263 LLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMV 322
            L W+ +D + + K +++GA  G++ GLV ITPG G+V PWGA+++G ++G + +  +  
Sbjct: 240 GLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVSK 299

Query: 323 LHRRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFN 382
           L ++L     +DD L  F  H V GI G + +GL A P +  +  G      GL      
Sbjct: 300 LKKKL----KIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGVGTG------GLLGG--- 346

Query: 383 GQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDAA-HGEE 441
                  KQ G Q++G A I AW  +VT +I   + + + LR++ ++ +IG D A HGE 
Sbjct: 347 -----NGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTIGLRVSEEEEKIGLDLAEHGEF 401

Query: 442 AY 443
           AY
Sbjct: 402 AY 403

The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf [Transport and binding proteins, Cations and iron carrying compounds]. Length = 403
>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family Back     alignment and domain information
>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional Back     alignment and domain information
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 472
COG0004409 AmtB Ammonia permease [Inorganic ion transport and 100.0
KOG0682500 consensus Ammonia permease [Inorganic ion transpor 100.0
PRK10666428 ammonium transporter; Provisional 100.0
TIGR00836403 amt ammonium transporter. The mechanism of energy 100.0
TIGR03644404 marine_trans_1 probable ammonium transporter, mari 100.0
PF00909399 Ammonium_transp: Ammonium Transporter Family; Inte 100.0
KOG3796442 consensus Ammonium transporter RHBG [Intracellular 100.0
PF00909399 Ammonium_transp: Ammonium Transporter Family; Inte 83.36
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.4e-111  Score=859.37  Aligned_cols=401  Identities=37%  Similarity=0.696  Sum_probs=374.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCcccCcchhhh
Q 012033           25 NNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALS  104 (472)
Q Consensus        25 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~~~~fiG~~~~~~~  104 (472)
                      +|+.|++|+|+|++|| ++|||||+|+|+|++|+||++|+++|+++++++++++|+++||+++||++.++|+|+..+.+.
T Consensus         1 ~~~~d~~wml~sa~LV-~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~~~~~~iG~~~~~~~   79 (409)
T COG0004           1 MDSGDTAWMLLSAALV-LLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGPDGNGFIGNLDQFFL   79 (409)
T ss_pred             CCcccHHHHHHHHHHH-HHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCCcccCCHHHHhc
Confidence            3679999999999999 999999999999999999999999999999999999999999999999866789999776544


Q ss_pred             cccccCCCC-CCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceee-ccccc-cccccc
Q 012033          105 EKYLLEPSG-DGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIW-GGGFL-EPYIID  181 (472)
Q Consensus       105 ~~~~~~~~~-~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW-~~GwL-~lG~~D  181 (472)
                      .+...++.. ..++|+.++++||++||++|++|++|+++||+|+++|++|+++|.++||||++||+| ++||| ++|++|
T Consensus        80 ~~~~~~~~~~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWvWggggwl~~~g~~D  159 (409)
T COG0004          80 NGLGFAAVAGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLALLGALD  159 (409)
T ss_pred             cCccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeEecCchHHHhcCcee
Confidence            443223322 247999999999999999999999999999999999999999999999999999999 67799 999999


Q ss_pred             cCCceehhhhHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHH
Q 012033          182 YAGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAAT  261 (472)
Q Consensus       182 faG~~vVH~~gG~~aL~~a~~lG~R~~r~~~~~~~hs~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~  261 (472)
                      ||||+|||..+|++||++++++|||+++.++++||||++++++|+.+||+||||||+||++..+.++..+++||++|+++
T Consensus       160 FAGgtVVHi~aG~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~~~~a~~a~~nT~lAaa~  239 (409)
T COG0004         160 FAGGTVVHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGVAALAFVNTNLAAAA  239 (409)
T ss_pred             cCCCceEEechhHHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchhhhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCChhhhhhhhhhcceeecCCCCccChhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccCccc
Q 012033          262 SLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFH  341 (472)
Q Consensus       262 g~l~~~~~~~~~~~k~s~~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~  341 (472)
                      |+++|++++|+++||+|+..+|||++||||+|||+|++|+||+|++||+++|++|++++++++||    +|+|||+|+++
T Consensus       240 g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~----l~~DD~ld~f~  315 (409)
T COG0004         240 GALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKK----LGVDDALDVFG  315 (409)
T ss_pred             HHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCccccee
Confidence            99999999999999999999999999999999999999999999999999999999999988886    89999999999


Q ss_pred             cccchhhHHHHHHHHccccccccccCCCCCCCCcccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012033          342 THAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLV  421 (472)
Q Consensus       342 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~~l~~~~  421 (472)
                      +||++|+||++++|+|++++..        ...|++|+        +++|++.|+.+++++.+|++++++++++++|++.
T Consensus       316 vHGvgGi~G~i~~GiFa~~~~~--------~~~G~~~~--------~~~~l~~Q~~~v~~~~~~~~v~t~ii~~vl~~~~  379 (409)
T COG0004         316 VHGVGGIVGAILTGIFAAPAVG--------GGGGLFYG--------GGVQLGVQLLGVLVTIVYAFVVTFIILKVLKLII  379 (409)
T ss_pred             ccchhhHHHHHHHHHhcCcccc--------ccCccccc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999998641        12355542        4599999999999999999999999999999999


Q ss_pred             cCCCChhHhhcc-ChhhhChhhhccc
Q 012033          422 NLRMNADDLEIG-DDAAHGEEAYALW  446 (472)
Q Consensus       422 ~LRv~~e~E~~G-D~~~hg~~ay~~~  446 (472)
                      +||++||||++| |.+||||++|++.
T Consensus       380 gLRvs~eeE~~GlD~~~Hge~aY~~~  405 (409)
T COG0004         380 GLRVSEEEELEGLDISEHGESAYSEE  405 (409)
T ss_pred             CCCCCHHHHhhCCChHHhcccccccc
Confidence            999999999999 9999999999874

>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10666 ammonium transporter; Provisional Back     alignment and domain information
>TIGR00836 amt ammonium transporter Back     alignment and domain information
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype Back     alignment and domain information
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix Back     alignment and domain information
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
1xqe_A418 The Mechanism Of Ammonia Transport Based On The Cry 2e-48
2nmr_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 2e-48
2ns1_A412 Crystal Structure Of The E. Coli Ammonia Channel Am 3e-48
2nuu_A415 Regulating The Escherichia Coli Ammonia Channel: Th 7e-48
2now_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 2e-47
3c1i_A424 Substrate Binding, Deprotonation And Selectivity At 2e-47
3c1h_A424 Substrate Binding, Deprotonation And Selectivity At 2e-47
2npd_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 3e-47
2npg_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 3e-47
2npc_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 3e-47
2npe_A424 An Unusual Twin-his Arrangement In The Pore Of Ammo 3e-47
3c1j_A424 Substrate Binding, Deprotonation And Selectivity At 2e-46
2npk_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 4e-46
1u77_A385 Crystal Structure Of Ammonia Channel Amtb From E. C 3e-44
2b2f_A399 Ammonium Transporter Amt-1 From A.Fulgidus (Native) 1e-42
3hd6_A490 Crystal Structure Of The Human Rhesus Glycoprotein 1e-04
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal Structure Of Amtb Of E. Coli. Length = 418 Back     alignment and structure 
Iteration: 1

 Score =  189 bits (481), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/425 (31%), Positives = 208/425 (48%), Gaps = 23/425 (5%)
Query: 21  SPWWNNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWV 80
           +P   +KADNA+ +  T +V   ++PG+ + YG +++ K  ++        FA+V + WV
Sbjct: 1   APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 81  LWAHQMAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGS 140
           ++ + +AFG       G  +  + +   L     G +    +V FQ +FA ITV L+ G+
Sbjct: 61  VYGYSLAFGEGN-NFFGNINWLMLKNIELTAV-MGSIYQYIHVAFQGSFACITVGLIVGA 118
Query: 141 LLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTA 199
           L  R+ F A +IFV +WLT SY   A  +WGGG L  +  +D+AGG V+H+++ ++G   
Sbjct: 119 LAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVG 178
Query: 200 AYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCA 259
           AY +G R    +  F P+N+  +  G   L++GW GFN GS   A  IAALA VNT +  
Sbjct: 179 AYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238
Query: 260 ATSLLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYT 319
           A ++L W+  +  +  K S++GA  G I GLV +TP  G +   GAL++G ++G    + 
Sbjct: 239 AAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWG 298
Query: 320 MMVLHRRLVFFQSVDDTLGVFHTHAVAXXXXXXXXXXXAKPNLLTMMYGPDKHGPGLFYS 379
           + +L R L     VDD   VF  H V            A  +L          G G    
Sbjct: 299 VTMLKRLL----RVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---------GGVGFAEG 345
Query: 380 LFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIGDDA-AH 438
           +  G       Q   Q+   A    W+ +V  +        V LR+  +    G D  +H
Sbjct: 346 VTMGH------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSH 399
Query: 439 GEEAY 443
           GE AY
Sbjct: 400 GENAY 404
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb Complexed With The Signal Transduction Protein Glnk Length = 412 Back     alignment and structure
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The Crystal Structure Of The Amtb-glnk Complex Length = 415 Back     alignment and structure
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli Length = 385 Back     alignment and structure
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native) Length = 399 Back     alignment and structure
>pdb|3HD6|A Chain A, Crystal Structure Of The Human Rhesus Glycoprotein Rhcg Length = 490 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 1e-107
1u7g_A385 Probable ammonium transporter; right handed helica 1e-105
3b9w_A407 Ammonium transporter family; membrane protein, amm 3e-69
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 2e-56
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Length = 399 Back     alignment and structure
 Score =  323 bits (831), Expect = e-107
 Identities = 126/422 (29%), Positives = 213/422 (50%), Gaps = 33/422 (7%)

Query: 26  NKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQ 85
           +  + AW L +T +V L  VPG+   Y  MV++K AVN   ++F +  + ++ W+ + + 
Sbjct: 2   SDGNVAWILASTALVMLM-VPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYS 60

Query: 86  MAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRM 145
           ++FG+ +  ++G  +       LL            ++ +Q  FAA+T+ +L  ++  R 
Sbjct: 61  VSFGNDISGIIGGLN-----YALLSGVK---GEDLLFMMYQMMFAAVTIAILTSAIAERA 112

Query: 146 NFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTAAYWVG 204
              ++++   LWLTF Y   A  +WGGG+L     +D+AGG V+H+SSG +    A  +G
Sbjct: 113 KVSSFILLSALWLTFVYAPFAHWLWGGGWLAKLGALDFAGGMVVHISSGFAALAVAMTIG 172

Query: 205 PRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLL 264
            R   + ++  P++I   L GA  LW GW GFNGGS L A  +A  A+V T+  AA +  
Sbjct: 173 KRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAVAGF 232

Query: 265 VWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLH 324
           VW+ +  I   K   +G V G I GL  ITP AG V+  GA+++G ++G + +   M   
Sbjct: 233 VWMVIGWI-KGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYL-AMDFR 290

Query: 325 RRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQ 384
            +      +D++L  +  H + G+ G +  G+LA P +            GL +      
Sbjct: 291 IKK----KIDESLDAWAIHGIGGLWGSVAVGILANPEV--------NGYAGLLFG----- 333

Query: 385 IEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRMNADDLEIG-DDAAHGEEAY 443
                +    Q++  A  TA+  +VT ++   V   V LR+++ +  +G D + H E AY
Sbjct: 334 ---NPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGLRVSSQEEYVGLDLSQHEEVAY 390

Query: 444 AL 445
            L
Sbjct: 391 TL 392
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Length = 385 Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Length = 407 Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query472
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 100.0
1u7g_A385 Probable ammonium transporter; right handed helica 100.0
3b9w_A407 Ammonium transporter family; membrane protein, amm 100.0
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 100.0
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Back     alignment and structure
Probab=100.00  E-value=7.2e-109  Score=853.89  Aligned_cols=393  Identities=32%  Similarity=0.605  Sum_probs=362.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCcccCcchhhh
Q 012033           25 NNKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVALS  104 (472)
Q Consensus        25 ~~~~d~~w~l~~~~lV~~~m~~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~~~~fiG~~~~~~~  104 (472)
                      +|+.|++|+|+|++|| ++|||||+|+|+|+||+||++|+++||++++++++++||++||+++||++.++|+|..++++.
T Consensus         1 ~~~~d~~w~l~~~~LV-~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~~~   79 (399)
T 2b2h_A            1 MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYALL   79 (399)
T ss_dssp             CCHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTGGG
T ss_pred             CCcccHHHHHHHHHHH-HHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHhhc
Confidence            3678999999999999 999999999999999999999999999999999999999999999999865689998554432


Q ss_pred             cccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceeeccccc-cccccccC
Q 012033          105 EKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFL-EPYIIDYA  183 (472)
Q Consensus       105 ~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW~~GwL-~lG~~Dfa  183 (472)
                      .+.  +     .-| .++++||++||++|++|++|+++||+|+.+|++|+++|+++||||++||+|++||| ++|++|||
T Consensus        80 ~~~--~-----~~~-~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~~GwL~~lG~~DFA  151 (399)
T 2b2h_A           80 SGV--K-----GED-LLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWGGGWLAKLGALDFA  151 (399)
T ss_dssp             TTC--C-----THH-HHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHHSSCHHHHTTCCCSS
T ss_pred             cCC--C-----CCc-hhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheECchhHHhcCCcccc
Confidence            221  0     012 68999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             CceehhhhHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHH
Q 012033          184 GGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSL  263 (472)
Q Consensus       184 G~~vVH~~gG~~aL~~a~~lG~R~~r~~~~~~~hs~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~  263 (472)
                      ||++||++||++||+++++||||++|+++++||||++++++|+++||+||||||+||++..+..++++++||++|+|+|+
T Consensus       152 Gs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag~  231 (399)
T 2b2h_A          152 GGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAVAG  231 (399)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccccchhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888999999999999999999999999999999888889999999999999999


Q ss_pred             HHHHHHHHHHhcCCChhhhhhhhhhcceeecCCCCccChhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccCccccc
Q 012033          264 LVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHTH  343 (472)
Q Consensus       264 l~~~~~~~~~~~k~s~~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~vH  343 (472)
                      ++|+++++++ ||+|+..++||+|||||+|||+|++++||+|++||+++|++|+++. .+++|    +|||||||++++|
T Consensus       232 l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~-~l~~k----l~iDD~l~a~~vH  305 (399)
T 2b2h_A          232 FVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAM-DFRIK----KKIDESLDAWAIH  305 (399)
T ss_dssp             HHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHH----TTCCCTTCHHHHH
T ss_pred             HHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHH-HHHHH----cCCCCCCCceecc
Confidence            9999999999 9999999999999999999999999999999999999999999998 44444    8999999999999


Q ss_pred             cchhhHHHHHHHHccccccccccCCCCCCCCcccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 012033          344 AVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNL  423 (472)
Q Consensus       344 g~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~~l~~~~~L  423 (472)
                      |+||+||++++|+|++++..        +.+|++|+        +++|++.|++|++++++|+++.++++++++|++.+|
T Consensus       306 gv~Gi~G~l~~glfa~~~~~--------g~~Gl~~g--------~~~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~gl  369 (399)
T 2b2h_A          306 GIGGLWGSVAVGILANPEVN--------GYAGLLFG--------NPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGL  369 (399)
T ss_dssp             HHHHHHHHHHHHHHCCHHHH--------SCCCGGGT--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             chhhHHHHHHHHHHcccccc--------CCCccccC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            99999999999999987542        12478885        248999999999999999999999999999999999


Q ss_pred             CCChhHhhcc-ChhhhChhhhcccCC
Q 012033          424 RMNADDLEIG-DDAAHGEEAYALWGD  448 (472)
Q Consensus       424 Rv~~e~E~~G-D~~~hg~~ay~~~~~  448 (472)
                      |+++|||++| |.+||||++|++.+.
T Consensus       370 Rv~~e~E~~GlD~~~hg~~ay~~~~~  395 (399)
T 2b2h_A          370 RVSSQEEYVGLDLSQHEEVAYTLEHH  395 (399)
T ss_dssp             BCCHHHHHHCHHHHHHCCCSCC----
T ss_pred             CCCHHHHHhCCCHHHhCcccCCcccc
Confidence            9999999999 999999999997544
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 472
d1u7ga_383 f.44.1.1 (A:) Ammonium transporter AmtB {Escherich 1e-54
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Length = 383 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

 Score =  185 bits (470), Expect = 1e-54
 Identities = 123/401 (30%), Positives = 199/401 (49%), Gaps = 22/401 (5%)

Query: 26  NKADNAWQLTATTMVCLQSVPGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQ 85
           +KADNA+ +  T +V   ++PG+ + YG +++ K  ++        FA+V + WV++ + 
Sbjct: 4   DKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYS 63

Query: 86  MAFGSALIPLMGKPDVALSEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRM 145
           +A G           + L    L   +  G +    +V FQ +FA ITV L+ G+L  R+
Sbjct: 64  LASGEGNNFFGNINWLMLKNIEL--TAVMGSIYQYIHVAFQGSFACITVGLIVGALAERI 121

Query: 146 NFYAWMIFVPLWLTFSYTIGAFTIWGGGFLEPY-IIDYAGGFVIHLSSGVSGFTAAYWVG 204
            F A +IFV +WLT SY   A  +WGGG L  +  +D+AGG V+H+++ ++G   AY +G
Sbjct: 122 RFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIG 181

Query: 205 PRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATSLL 264
            R    +  F P+N+  +  G   L++GW GFN GS   A  IAALA VNT +  A ++L
Sbjct: 182 KRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAIL 241

Query: 265 VWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLH 324
            W+  +  +    S++GA  G I GLV +TP  G +   GAL++G ++G    + + +L 
Sbjct: 242 GWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLK 301

Query: 325 RRLVFFQSVDDTLGVFHTHAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQ 384
           R L       D   VF  H V GI+G +++G+ A  +L                 +   +
Sbjct: 302 RLLRVD----DPCDVFGVHGVCGIVGCIMTGIFAASSLG---------------GVGFAE 342

Query: 385 IEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVNLRM 425
                 Q   Q+   A    W+ +V  +        V LR+
Sbjct: 343 GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query472
d1u7ga_383 Ammonium transporter AmtB {Escherichia coli [TaxId 100.0
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-93  Score=736.65  Aligned_cols=379  Identities=33%  Similarity=0.574  Sum_probs=348.6

Q ss_pred             cccchhHHHHHHHHHHHHHHH-HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCcccCcchhh
Q 012033           25 NNKADNAWQLTATTMVCLQSV-PGLVILYGSMVKKKWAVNSAFMAFYAFAVVLVCWVLWAHQMAFGSALIPLMGKPDVAL  103 (472)
Q Consensus        25 ~~~~d~~w~l~~~~lV~~~m~-~GfalleaG~vr~kn~~~~l~~~~~~~~v~~i~w~~~Gy~lafg~~~~~fiG~~~~~~  103 (472)
                      .|+.|++|+|+|++|| ++|| |||+|+|+|+||+||++|+++||++++++++++||++||+++||++ ++++|...+.+
T Consensus         3 ~d~~d~~~~l~~~~lV-~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~lafg~~-~~~~g~~~~~~   80 (383)
T d1u7ga_           3 ADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWLM   80 (383)
T ss_dssp             CCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTGG
T ss_pred             cCcccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHheeeEeEEeEcCCC-CCcCCCcchhh
Confidence            4689999999999999 8887 8999999999999999999999999999999999999999999986 45777766554


Q ss_pred             hcccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHhhhhhccccceeeccccc-ccccccc
Q 012033          104 SEKYLLEPSGDGKVPMADYVFFQFAFAAITVVLLAGSLLGRMNFYAWMIFVPLWLTFSYTIGAFTIWGGGFL-EPYIIDY  182 (472)
Q Consensus       104 ~~~~~~~~~~~~~~p~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vY~~~ahWvW~~GwL-~lG~~Df  182 (472)
                      ..+...+ .....+|...+++||++||+++++|++|+++||+|+++|++|+++|++++|||++||+|++||| ++|++||
T Consensus        81 ~~~~~~~-~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~~~hwvw~~g~l~~lG~~Df  159 (383)
T d1u7ga_          81 LKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF  159 (383)
T ss_dssp             GTTCCTT-CEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHSSCHHHHHTCCCS
T ss_pred             ccCcccc-cccccchhhHHhHhhhhhhhhhccccccccccccceeEeeehhhHhhhhccchHHheecCCCccccCCceec
Confidence            4433211 1234578899999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             CCceehhhhHHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHHHHHH
Q 012033          183 AGGFVIHLSSGVSGFTAAYWVGPRHSRDRHNFPPNNIIHMLGGAGFLWLGWTGFNGGSPLVAGRIAALAIVNTHLCAATS  262 (472)
Q Consensus       183 aG~~vVH~~gG~~aL~~a~~lG~R~~r~~~~~~~hs~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g  262 (472)
                      |||++||++||++||++++++|||++|++++++|||++++.+|+++||+||+|||+||+...+..+.++++||++|++++
T Consensus       160 aGs~vVH~~gG~~aL~~~~~lgpR~~~~~~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~  239 (383)
T d1u7ga_         160 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAA  239 (383)
T ss_dssp             SCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHH
T ss_pred             cCceeeeecccHHHHHHHHhcCCcccccccccccCChhhhhHHHHHHHHHHHHhccccccccchHHHHHHHHHHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988888899999999999999


Q ss_pred             HHHHHHHHHHHhcCCChhhhhhhhhhcceeecCCCCccChhHHHHHHhhhhhHHHHHHHHHhhhhccccccccccCcccc
Q 012033          263 LLVWVSLDMIVYKKSSVIGAVQGMITGLVCITPGAGIVEPWGALLMGAMSGSIPWYTMMVLHRRLVFFQSVDDTLGVFHT  342 (472)
Q Consensus       263 ~l~~~~~~~~~~~k~s~~~~~nG~lAGLVaita~a~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~~~l~IDD~~~v~~v  342 (472)
                      +++|+..+++.+||+|+..++||+|||||+|||+|++++||+|++||+++|++|+++.+++++|    +|||||||++++
T Consensus       240 ~~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~----~~iDD~~~~~~v  315 (383)
T d1u7ga_         240 ILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRL----LRVDDPCDVFGV  315 (383)
T ss_dssp             HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH----HCSCCGGGHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhh----cccccccceEee
Confidence            9999999999999999999999999999999999999999999999999999999999988765    899999999999


Q ss_pred             ccchhhHHHHHHHHccccccccccCCCCCCCCcccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012033          343 HAVAGILGGLLSGLLAKPNLLTMMYGPDKHGPGLFYSLFNGQIEFGFKQFGYQIVGTAFITAWNAIVTSLICIFVSRLVN  422 (472)
Q Consensus       343 Hg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~g~~~g~~~~~~~ql~~Ql~g~~~~~~~s~~~~~ii~~~l~~~~~  422 (472)
                      |++||+||++++|+|++++.....+     .++.          ...+|+++|++|++++++|++++++++++++|++.+
T Consensus       316 Hg~~Gi~G~l~~glfa~~~~~g~~~-----~~~~----------~~~~ql~~Ql~g~~v~~~~~~~~~~ii~~il~~~~g  380 (383)
T d1u7ga_         316 HGVCGIVGCIMTGIFAASSLGGVGF-----AEGV----------TMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVG  380 (383)
T ss_dssp             HHHHHHHHHHHHHHHTSGGGTCCCC-----CTTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhHHHHHHHHHHhcCcccccccc-----cccc----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            9999999999999999876543211     1111          135899999999999999999999999999999999


Q ss_pred             CCC
Q 012033          423 LRM  425 (472)
Q Consensus       423 LRv  425 (472)
                      |||
T Consensus       381 LRV  383 (383)
T d1u7ga_         381 LRV  383 (383)
T ss_dssp             SBC
T ss_pred             CcC
Confidence            997