Citrus Sinensis ID: 012056

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470--
MGHSGNLQLKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKREKPSCPVVG
cccccccccEEEEccccEEEccccccccccccccccccccccccccccccccEEccccEEEEEEEEcccccccccEEccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccHHcHHcHHcccccEEEcccccccHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEccEEEEEcHHHHHccccccccccHHHHHHHHHcccccccccHHHHHHHcccccccccc
cccccccccEEEcccccEEHHcHHHHHHHccccccccccccccccccccccHEccccHHHHHHHHccccccccccEccccccEEEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEcccccccccccEEEccHHHHHcHHccccEEEccccccccHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEEEccccccccccccEcHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHcccccEEEEccccccccccccHHHHHHHHHHHcccEEEEEEccccHHHHHHHHcccccccccccccHccHHHHHHHHHHHHHHHcccccEEEEEEcccHEEEcccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccEEEEEHHHHHHcccccccccHHHHHHHHHccccccccHHHHHHHHHccccccccc
mghsgnlqlkvvngdagyvledvphltdyipdlptypnplqfnAAYSVVKQYFVnvddtvsqkivvhkdsprgthfrragprqkvyfvSDEVHACIVTcgglcpglnTVIREIVCGLYHMYGVSKIlgidggyrgfyskntinltpkVVNDIHkrggtilgtsrgghdtskIVDSIqdrginqvyiiggdgtqkGAAVIYEEIRQRGLKVAvagipktidndipvidksfgFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATlgsrdvdcclipespfylegeggLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINlkyidptymiraipsnasdnVYCTLLAQSAVHGavagytgftvgpvngrhayipfnrinerqNQVVITDRMWARVlsstnqpsflsANELAkfkrekpscpvvg
MGHSGNLQLKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKivvhkdsprgthfrragprQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGgtilgtsrgghdtSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAvagipktidndipviDKSFGFDTAVEEAQRAINAahveaesiengiGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSStnqpsflsanelakfkrekpscpvvg
MGHSGNLQLKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKREKPSCPVVG
*******QLKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLL***************KLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLS***************************
*************GDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLA*************NKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPS*********************
MGHSGNLQLKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPSFLSANELAKF***********
*******QLKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKREKP******
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MGHSGNLQLKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAxxxxxxxxxxxxxxxxxxxxxIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKREKPSCPVVG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query472 2.2.26 [Sep-21-2011]
Q94AA4489 6-phosphofructokinase 3 O yes no 0.963 0.930 0.824 0.0
Q9M076462 6-phosphofructokinase 6 O no no 0.940 0.961 0.836 0.0
Q9C5J7485 6-phosphofructokinase 7 O no no 0.974 0.948 0.800 0.0
Q9M0F9473 6-phosphofructokinase 1 O no no 0.944 0.942 0.817 0.0
Q9FKG3530 6-phosphofructokinase 4, no no 0.932 0.830 0.775 0.0
Q9FIK0444 6-phosphofructokinase 2 O no no 0.875 0.930 0.557 1e-135
Q8VYN6537 6-phosphofructokinase 5, no no 0.900 0.791 0.483 1e-114
Q59126341 Pyrophosphate--fructose 6 N/A no 0.625 0.865 0.346 1e-33
P65690343 6-phosphofructokinase OS= yes no 0.453 0.623 0.390 3e-31
P65691343 6-phosphofructokinase OS= yes no 0.453 0.623 0.390 3e-31
>sp|Q94AA4|K6PF3_ARATH 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1 Back     alignment and function desciption
 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/457 (82%), Positives = 415/457 (90%), Gaps = 2/457 (0%)

Query: 10  KVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKD 69
           K++NG  GYVLEDVPHL+DY+P LPTYPNPLQ N AYSVVKQYFV+ DD+V QKIVVHKD
Sbjct: 10  KIINGSCGYVLEDVPHLSDYLPGLPTYPNPLQDNPAYSVVKQYFVDADDSVPQKIVVHKD 69

Query: 70  SPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGI 129
            PRG HFRRAGPRQKVYF SDEVHACIVTCGGLCPGLNTVIREIV  L +MYGV +ILGI
Sbjct: 70  GPRGIHFRRAGPRQKVYFESDEVHACIVTCGGLCPGLNTVIREIVSSLSYMYGVKRILGI 129

Query: 130 DGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGG 189
           DGGYRGFY+KNT++L  KVVNDIHKRGGTILGTSRGGHDT+KIVDSIQDRGINQVYIIGG
Sbjct: 130 DGGYRGFYAKNTVSLDSKVVNDIHKRGGTILGTSRGGHDTTKIVDSIQDRGINQVYIIGG 189

Query: 190 DGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 249
           DGTQ+GA+VI+EEIR+RGLKVAV GIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE
Sbjct: 190 DGTQRGASVIFEEIRRRGLKVAVIGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 249

Query: 250 AESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE 309
           AESIENGIGVVKLMGRY GFIAMYATL SRDVDCCLIPESPFYLEGEGGL+E+IEKRLKE
Sbjct: 250 AESIENGIGVVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGEGGLFEYIEKRLKE 309

Query: 310 NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINL 369
           +GHMV+VIAEGAGQDL+++S++SM  +DASGNKLL+DVGLW+S  IKDHF +  KM +NL
Sbjct: 310 SGHMVLVIAEGAGQDLMSKSMESMTLKDASGNKLLKDVGLWLSQSIKDHFNQ-KKMVMNL 368

Query: 370 KYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINER 429
           KYIDPTYMIRA+PSNASDNVYCTLLAQSAVHGA+AGYTG+  G VNGR  YIPF RI E+
Sbjct: 369 KYIDPTYMIRAVPSNASDNVYCTLLAQSAVHGAMAGYTGYISGLVNGRQTYIPFYRITEK 428

Query: 430 QNQVVITDRMWARVLSSTNQPSFLSANELAKFKREKP 466
           QN VVITDRMWAR+LSSTNQPSFL   ++    +EKP
Sbjct: 429 QNHVVITDRMWARLLSSTNQPSFLGPKDVFD-NKEKP 464

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9M076|K6PF6_ARATH 6-phosphofructokinase 6 OS=Arabidopsis thaliana GN=PFK6 PE=1 SV=1 Back     alignment and function description
>sp|Q9C5J7|K6PF7_ARATH 6-phosphofructokinase 7 OS=Arabidopsis thaliana GN=PFK7 PE=1 SV=1 Back     alignment and function description
>sp|Q9M0F9|K6PF1_ARATH 6-phosphofructokinase 1 OS=Arabidopsis thaliana GN=PFK1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKG3|K6PF4_ARATH 6-phosphofructokinase 4, chloroplastic OS=Arabidopsis thaliana GN=PFK4 PE=1 SV=1 Back     alignment and function description
>sp|Q9FIK0|K6PF2_ARATH 6-phosphofructokinase 2 OS=Arabidopsis thaliana GN=PFK2 PE=1 SV=1 Back     alignment and function description
>sp|Q8VYN6|K6PF5_ARATH 6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PFK5 PE=1 SV=1 Back     alignment and function description
>sp|Q59126|PFP_AMYME Pyrophosphate--fructose 6-phosphate 1-phosphotransferase OS=Amycolatopsis methanolica GN=pfp PE=1 SV=2 Back     alignment and function description
>sp|P65690|K6PF_MYCTU 6-phosphofructokinase OS=Mycobacterium tuberculosis GN=pfkA PE=3 SV=1 Back     alignment and function description
>sp|P65691|K6PF_MYCBO 6-phosphofructokinase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=pfkA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query472
255550894485 phosphofructokinase, putative [Ricinus c 0.985 0.958 0.880 0.0
356515641507 PREDICTED: 6-phosphofructokinase 3-like 0.974 0.907 0.878 0.0
356507939509 PREDICTED: 6-phosphofructokinase 3-like 0.970 0.899 0.880 0.0
224092250480 predicted protein [Populus trichocarpa] 0.987 0.970 0.862 0.0
225429400488 PREDICTED: 6-phosphofructokinase 3 [Viti 0.974 0.942 0.857 0.0
225445037539 PREDICTED: 6-phosphofructokinase 3-like 0.985 0.862 0.849 0.0
147799033488 hypothetical protein VITISV_023326 [Viti 0.974 0.942 0.857 0.0
297738727491 unnamed protein product [Vitis vinifera] 0.985 0.947 0.849 0.0
255549790543 phosphofructokinase, putative [Ricinus c 0.978 0.850 0.829 0.0
255546259 632 phosphofructokinase, putative [Ricinus c 0.970 0.724 0.843 0.0
>gi|255550894|ref|XP_002516495.1| phosphofructokinase, putative [Ricinus communis] gi|223544315|gb|EEF45836.1| phosphofructokinase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  859 bits (2219), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/469 (88%), Positives = 441/469 (94%), Gaps = 4/469 (0%)

Query: 1   MGHS-GNLQ---LKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNV 56
           MG++ GNLQ   +K+VNG+AGY+LEDVPHLTDYIPDLPTYPNPLQ N AYS VKQYFVNV
Sbjct: 1   MGNADGNLQSQMMKIVNGEAGYLLEDVPHLTDYIPDLPTYPNPLQDNPAYSAVKQYFVNV 60

Query: 57  DDTVSQKIVVHKDSPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCG 116
           DDTV+QKIVVHKD PRGTHFRRAGPRQKVYF SDEVHACIVTCGGLCPGLNTVIREIVCG
Sbjct: 61  DDTVAQKIVVHKDGPRGTHFRRAGPRQKVYFKSDEVHACIVTCGGLCPGLNTVIREIVCG 120

Query: 117 LYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSI 176
           L+HMYGV+K+LGIDGGYRGFYSKNT+ LTPKVVNDIHKRGGTILGTSRGGHD SKIVDSI
Sbjct: 121 LHHMYGVTKVLGIDGGYRGFYSKNTVALTPKVVNDIHKRGGTILGTSRGGHDKSKIVDSI 180

Query: 177 QDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV 236
           QDRGINQVYIIGGDGTQKGAAVIYEEI++RGLKVAVAGIPKTIDNDIPVIDKSFGFD+AV
Sbjct: 181 QDRGINQVYIIGGDGTQKGAAVIYEEIQRRGLKVAVAGIPKTIDNDIPVIDKSFGFDSAV 240

Query: 237 EEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGE 296
           EEAQRAINAAHVEAES ENGIGVVKLMGRY GFIAMYATL SRDVDCCLIPESPFYLEG+
Sbjct: 241 EEAQRAINAAHVEAESTENGIGVVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGQ 300

Query: 297 GGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIK 356
           GGL EFI KRLKENGHMVIVIAEGAGQDL+++SLQSMNQQDASGNKLLQDVGLWIS +IK
Sbjct: 301 GGLLEFIGKRLKENGHMVIVIAEGAGQDLVSKSLQSMNQQDASGNKLLQDVGLWISQRIK 360

Query: 357 DHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNG 416
           DHFAR H+M I LKYIDPTYMIRAIPSNASDNVYCTLLA SAVHGA+AGYTGFTVGPVNG
Sbjct: 361 DHFAREHRMNITLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVNG 420

Query: 417 RHAYIPFNRINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKREK 465
           RHAYIPFNRI E+QN VVITDRMWAR+LSST+QPSF+S   L K K+++
Sbjct: 421 RHAYIPFNRITEKQNNVVITDRMWARLLSSTDQPSFMSPKVLTKVKKQE 469

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356515641|ref|XP_003526507.1| PREDICTED: 6-phosphofructokinase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356507939|ref|XP_003522720.1| PREDICTED: 6-phosphofructokinase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|224092250|ref|XP_002309528.1| predicted protein [Populus trichocarpa] gi|222855504|gb|EEE93051.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225429400|ref|XP_002275308.1| PREDICTED: 6-phosphofructokinase 3 [Vitis vinifera] gi|296081592|emb|CBI20597.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225445037|ref|XP_002283274.1| PREDICTED: 6-phosphofructokinase 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147799033|emb|CAN74837.1| hypothetical protein VITISV_023326 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297738727|emb|CBI27972.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255549790|ref|XP_002515946.1| phosphofructokinase, putative [Ricinus communis] gi|223544851|gb|EEF46366.1| phosphofructokinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255546259|ref|XP_002514189.1| phosphofructokinase, putative [Ricinus communis] gi|223546645|gb|EEF48143.1| phosphofructokinase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query472
TAIR|locus:2136849489 PFK3 "phosphofructokinase 3" [ 0.963 0.930 0.827 1.8e-206
TAIR|locus:2165046485 PFK7 "phosphofructokinase 7" [ 0.974 0.948 0.800 6.2e-204
TAIR|locus:2134108462 PFK6 "phosphofructokinase 6" [ 0.940 0.961 0.836 7.9e-204
TAIR|locus:2118249473 PFK1 "phosphofructokinase 1" [ 0.944 0.942 0.817 5.2e-200
TAIR|locus:2151571530 PFK4 "phosphofructokinase 4" [ 0.932 0.830 0.775 6e-190
TAIR|locus:2160897444 PFK2 "phosphofructokinase 2" [ 0.879 0.934 0.557 2.6e-125
TAIR|locus:2041208537 PFK5 "phosphofructokinase 5" [ 0.783 0.689 0.544 9.2e-107
TIGR_CMR|CHY_1349361 CHY_1349 "phosphofructokinase" 0.658 0.861 0.326 6.5e-35
UNIPROTKB|P65690343 pfkA "6-phosphofructokinase" [ 0.453 0.623 0.390 3.7e-32
TIGR_CMR|CHY_1143321 CHY_1143 "6-phosphofructokinas 0.466 0.685 0.372 7.9e-30
TAIR|locus:2136849 PFK3 "phosphofructokinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1997 (708.0 bits), Expect = 1.8e-206, P = 1.8e-206
 Identities = 378/457 (82%), Positives = 415/457 (90%)

Query:    10 KVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKD 69
             K++NG  GYVLEDVPHL+DY+P LPTYPNPLQ N AYSVVKQYFV+ DD+V QKIVVHKD
Sbjct:    10 KIINGSCGYVLEDVPHLSDYLPGLPTYPNPLQDNPAYSVVKQYFVDADDSVPQKIVVHKD 69

Query:    70 SPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGI 129
              PRG HFRRAGPRQKVYF SDEVHACIVTCGGLCPGLNTVIREIV  L +MYGV +ILGI
Sbjct:    70 GPRGIHFRRAGPRQKVYFESDEVHACIVTCGGLCPGLNTVIREIVSSLSYMYGVKRILGI 129

Query:   130 DGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGG 189
             DGGYRGFY+KNT++L  KVVNDIHKRGGTILGTSRGGHDT+KIVDSIQDRGINQVYIIGG
Sbjct:   130 DGGYRGFYAKNTVSLDSKVVNDIHKRGGTILGTSRGGHDTTKIVDSIQDRGINQVYIIGG 189

Query:   190 DGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 249
             DGTQ+GA+VI+EEIR+RGLKVAV GIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE
Sbjct:   190 DGTQRGASVIFEEIRRRGLKVAVIGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVE 249

Query:   250 AESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE 309
             AESIENGIGVVKLMGRY GFIAMYATL SRDVDCCLIPESPFYLEGEGGL+E+IEKRLKE
Sbjct:   250 AESIENGIGVVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGEGGLFEYIEKRLKE 309

Query:   310 NGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINL 369
             +GHMV+VIAEGAGQDL+++S++SM  +DASGNKLL+DVGLW+S  IKDHF +  KM +NL
Sbjct:   310 SGHMVLVIAEGAGQDLMSKSMESMTLKDASGNKLLKDVGLWLSQSIKDHFNQ-KKMVMNL 368

Query:   370 KYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINER 429
             KYIDPTYMIRA+PSNASDNVYCTLLAQSAVHGA+AGYTG+  G VNGR  YIPF RI E+
Sbjct:   369 KYIDPTYMIRAVPSNASDNVYCTLLAQSAVHGAMAGYTGYISGLVNGRQTYIPFYRITEK 428

Query:   430 QNQVVITDRMWARVLSSTNQPSFLSANELAKFKREKP 466
             QN VVITDRMWAR+LSSTNQPSFL   ++   K EKP
Sbjct:   429 QNHVVITDRMWARLLSSTNQPSFLGPKDVFDNK-EKP 464
GO:0003872 "6-phosphofructokinase activity" evidence=IEA;ISS;IDA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005945 "6-phosphofructokinase complex" evidence=IEA;ISS
GO:0006096 "glycolysis" evidence=ISS;IDA
GO:0005829 "cytosol" evidence=IDA
GO:0010053 "root epidermal cell differentiation" evidence=IMP
TAIR|locus:2165046 PFK7 "phosphofructokinase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134108 PFK6 "phosphofructokinase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118249 PFK1 "phosphofructokinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151571 PFK4 "phosphofructokinase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160897 PFK2 "phosphofructokinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041208 PFK5 "phosphofructokinase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1349 CHY_1349 "phosphofructokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P65690 pfkA "6-phosphofructokinase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1143 CHY_1143 "6-phosphofructokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94AA4K6PF3_ARATH2, ., 7, ., 1, ., 1, 10.82490.96390.9304yesno
Q9C5J7K6PF7_ARATH2, ., 7, ., 1, ., 1, 10.80080.97450.9484nono
Q9M0F9K6PF1_ARATH2, ., 7, ., 1, ., 1, 10.81730.94490.9429nono
Q9FKG3K6PF4_ARATH2, ., 7, ., 1, ., 1, 10.7750.93220.8301nono
Q9M076K6PF6_ARATH2, ., 7, ., 1, ., 1, 10.83660.94060.9610nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.110.979
3rd Layer2.7.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
PLN02564484 PLN02564, PLN02564, 6-phosphofructokinase 0.0
PRK06830443 PRK06830, PRK06830, diphosphate--fructose-6-phosph 0.0
PTZ00286459 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Prov 0.0
PLN02884411 PLN02884, PLN02884, 6-phosphofructokinase 1e-161
COG0205347 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate 6e-71
PRK03202320 PRK03202, PRK03202, 6-phosphofructokinase; Provisi 2e-49
TIGR02483324 TIGR02483, PFK_mixed, phosphofructokinase 4e-47
cd00363338 cd00363, PFK, Phosphofructokinase, a key regulator 1e-45
TIGR02482301 TIGR02482, PFKA_ATP, 6-phosphofructokinase 9e-34
cd00763317 cd00763, Bacterial_PFK, Phosphofructokinase, a key 2e-33
pfam00365279 pfam00365, PFK, Phosphofructokinase 1e-32
PRK14071360 PRK14071, PRK14071, 6-phosphofructokinase; Provisi 5e-32
PRK06555403 PRK06555, PRK06555, pyrophosphate--fructose-6-phos 2e-23
PRK14072416 PRK14072, PRK14072, 6-phosphofructokinase; Provisi 2e-21
PTZ00287 1419 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisi 9e-21
TIGR02477539 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosp 1e-20
TIGR02478746 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukar 2e-19
cd00765550 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a 1e-18
TIGR02478 746 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukar 6e-18
PRK07085555 PRK07085, PRK07085, diphosphate--fructose-6-phosph 9e-18
cd00764 762 cd00764, Eukaryotic_PFK, Phosphofructokinase, a ke 2e-17
PTZ00468 1328 PTZ00468, PTZ00468, phosphofructokinase family pro 9e-16
cd00764762 cd00764, Eukaryotic_PFK, Phosphofructokinase, a ke 2e-15
PLN03028 610 PLN03028, PLN03028, pyrophosphate--fructose-6-phos 1e-12
PLN02251568 PLN02251, PLN02251, pyrophosphate-dependent phosph 2e-12
PTZ00287 1419 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisi 0.002
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase Back     alignment and domain information 
 Score = 1019 bits (2636), Expect = 0.0
 Identities = 404/463 (87%), Positives = 434/463 (93%)

Query: 5   GNLQLKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKI 64
           G+ + K+V GDAGYVLEDVPHLTDY+PDLPTYPNPLQ N AYSVVKQYFVN DDTV+QKI
Sbjct: 1   GSSKPKIVTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKI 60

Query: 65  VVHKDSPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVS 124
           VVHKDSPRGTHFRRAGPRQKVYF SDEV ACIVTCGGLCPGLNTVIREIVCGL +MYGV+
Sbjct: 61  VVHKDSPRGTHFRRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVT 120

Query: 125 KILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV 184
           +ILGIDGGYRGFYS+NTI LTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV
Sbjct: 121 RILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQV 180

Query: 185 YIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 244
           YIIGGDGTQKGA+VIYEEIR+RGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN
Sbjct: 181 YIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAIN 240

Query: 245 AAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIE 304
           AAHVEAES+ENGIG+VKLMGRY GFIAMYATL SRDVDCCLIPESPFYLEG+GGL+EFIE
Sbjct: 241 AAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIE 300

Query: 305 KRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHK 364
           KRLKENGHMVIV+AEGAGQDL+AES++S + QDASGNKLL DVGLW+S KIKDHF ++ K
Sbjct: 301 KRLKENGHMVIVVAEGAGQDLIAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKK 360

Query: 365 MAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFN 424
           M INLKYIDPTYMIRAIPSNASDNVYCTLLA SAVHGA+AGYTGFTVGPVNGRHAYIPF 
Sbjct: 361 MPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAGYTGFTVGPVNGRHAYIPFY 420

Query: 425 RINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKREKPS 467
           RI E+QN+VVITDRMWAR+LSSTNQPSFLS  ++ + KRE   
Sbjct: 421 RITEKQNKVVITDRMWARLLSSTNQPSFLSPKDVLEAKREDEE 463

Length = 484
>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|185539 PTZ00286, PTZ00286, 6-phospho-1-fructokinase; Provisional Back     alignment and domain information
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase Back     alignment and domain information
>gnl|CDD|223283 COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235111 PRK03202, PRK03202, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase Back     alignment and domain information
>gnl|CDD|238216 cd00363, PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase Back     alignment and domain information
>gnl|CDD|238388 cd00763, Bacterial_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|109425 pfam00365, PFK, Phosphofructokinase Back     alignment and domain information
>gnl|CDD|184487 PRK14071, PRK14071, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|180620 PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated Back     alignment and domain information
>gnl|CDD|237600 PRK14072, PRK14072, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional Back     alignment and domain information
>gnl|CDD|131530 TIGR02477, PFKA_PPi, diphosphate--fructose-6-phosphate 1-phosphotransferase Back     alignment and domain information
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>gnl|CDD|238390 cd00765, Pyrophosphate_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|233884 TIGR02478, 6PF1K_euk, 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein; Provisional Back     alignment and domain information
>gnl|CDD|238389 cd00764, Eukaryotic_PFK, Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>gnl|CDD|215543 PLN03028, PLN03028, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>gnl|CDD|215140 PLN02251, PLN02251, pyrophosphate-dependent phosphofructokinase Back     alignment and domain information
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 472
PLN02564484 6-phosphofructokinase 100.0
PRK06830443 diphosphate--fructose-6-phosphate 1-phosphotransfe 100.0
PTZ00286459 6-phospho-1-fructokinase; Provisional 100.0
PLN02884411 6-phosphofructokinase 100.0
PRK06555403 pyrophosphate--fructose-6-phosphate 1-phosphotrans 100.0
PRK14071360 6-phosphofructokinase; Provisional 100.0
PRK14072416 6-phosphofructokinase; Provisional 100.0
TIGR02483324 PFK_mixed phosphofructokinase. Members of this fam 100.0
TIGR02478745 6PF1K_euk 6-phosphofructokinase, eukaryotic type. 100.0
cd00763317 Bacterial_PFK Phosphofructokinase, a key regulator 100.0
cd00363338 PFK Phosphofructokinase, a key regulatory enzyme i 100.0
cd00764762 Eukaryotic_PFK Phosphofructokinase, a key regulato 100.0
TIGR02482301 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokin 100.0
PRK03202320 6-phosphofructokinase; Provisional 100.0
COG0205347 PfkA 6-phosphofructokinase [Carbohydrate transport 100.0
cd00764 762 Eukaryotic_PFK Phosphofructokinase, a key regulato 100.0
TIGR02478 745 6PF1K_euk 6-phosphofructokinase, eukaryotic type. 100.0
TIGR02477539 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosp 100.0
PRK07085555 diphosphate--fructose-6-phosphate 1-phosphotransfe 100.0
cd00765550 Pyrophosphate_PFK Phosphofructokinase, a key regul 100.0
PLN03028610 pyrophosphate--fructose-6-phosphate 1-phosphotrans 100.0
PF00365282 PFK: Phosphofructokinase; InterPro: IPR000023 The 100.0
PLN02251568 pyrophosphate-dependent phosphofructokinase 100.0
PTZ00468 1328 phosphofructokinase family protein; Provisional 100.0
PTZ00287 1419 6-phosphofructokinase; Provisional 100.0
PTZ00287 1419 6-phosphofructokinase; Provisional 100.0
PTZ00468 1328 phosphofructokinase family protein; Provisional 100.0
KOG2440 666 consensus Pyrophosphate-dependent phosphofructo-1- 100.0
KOG2440666 consensus Pyrophosphate-dependent phosphofructo-1- 100.0
PRK04761246 ppnK inorganic polyphosphate/ATP-NAD kinase; Revie 93.43
PRK14077287 pnk inorganic polyphosphate/ATP-NAD kinase; Provis 92.11
PRK04885265 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 91.87
PF00532279 Peripla_BP_1: Periplasmic binding proteins and sug 90.25
PRK00561259 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 90.17
PRK03372306 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 89.96
PRK03501264 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 89.87
PRK04539296 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 89.1
PRK01911292 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 89.07
PRK14075256 pnk inorganic polyphosphate/ATP-NAD kinase; Provis 88.89
PRK02649305 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 87.97
PRK03378292 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 87.88
PF01513285 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me 87.82
PRK10014342 DNA-binding transcriptional repressor MalI; Provis 87.49
PLN02935508 Bifunctional NADH kinase/NAD(+) kinase 86.62
PLN02929301 NADH kinase 85.81
PRK01231295 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 85.13
PRK10703341 DNA-binding transcriptional repressor PurR; Provis 84.12
COG3199355 Predicted inorganic polyphosphate/ATP-NAD kinase [ 83.89
PRK13337304 putative lipid kinase; Reviewed 82.77
cd01537264 PBP1_Repressors_Sugar_Binding_like Ligand-binding 82.52
COG1609333 PurR Transcriptional regulators [Transcription] 82.33
PRK13055334 putative lipid kinase; Reviewed 81.84
PRK02645305 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 81.83
PRK03708277 ppnK inorganic polyphosphate/ATP-NAD kinase; Provi 81.62
PRK13054300 lipid kinase; Reviewed 81.41
PRK02155291 ppnK NAD(+)/NADH kinase family protein; Provisiona 80.88
PLN02727986 NAD kinase 80.75
PRK11914306 diacylglycerol kinase; Reviewed 80.09
>PLN02564 6-phosphofructokinase Back     alignment and domain information 
Probab=100.00  E-value=2.7e-119  Score=946.37  Aligned_cols=458  Identities=88%  Similarity=1.373  Sum_probs=432.2

Q ss_pred             CCCceeecCCCCcccccccchhhhCCCCCCCcCCCCCCcccccccccccccchHHHHHHHhccCCCCcccccccCCcccc
Q 012056            6 NLQLKVVNGDAGYVLEDVPHLTDYIPDLPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDSPRGTHFRRAGPRQKV   85 (472)
Q Consensus         6 ~~~~~~~~~~~~~~~eav~al~~~~p~~~~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~~~~~~f~~~~~~~~~   85 (472)
                      ..+.|+++++..+.+|.||||.++.|+.|.+++||..|+.++.....||++++.|+..+..++...++..|++||||+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~agpr~~i   81 (484)
T PLN02564          2 SSKPKIVTGDAGYVLEDVPHLTDYLPDLPTYPNPLQDNPAYSVVKQYFVNEDDTVAQKIVVHKDSPRGTHFRRAGPRQKV   81 (484)
T ss_pred             CCcCccccCCCceeeccCcchhhcCCCcCCCCCccCCCcccccccceEeCCCCeEEEeecccccccCCccceecCCcceE
Confidence            45789999999999999999999999999999999999999988899999999999987666556678899999999999


Q ss_pred             cccCCCeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccC
Q 012056           86 YFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRG  165 (472)
Q Consensus        86 ~~~~~~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~  165 (472)
                      ||+|+++|||||||||||||||+|||++|+.+.+.|++.+||||++||+||+++++++|+|++|++|+++|||+|||||+
T Consensus        82 ~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGTiLGTsR~  161 (484)
T PLN02564         82 YFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGGTILGTSRG  161 (484)
T ss_pred             EEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCCceeccCCC
Confidence            99999999999999999999999999999988777787899999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHH
Q 012056          166 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA  245 (472)
Q Consensus       166 ~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~  245 (472)
                      ++++++++++|++++||+||+|||||||++|++|+++++++|++|+||||||||||||++||+|||||||+++++++|++
T Consensus       162 ~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~~~~~aI~~  241 (484)
T PLN02564        162 GHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA  241 (484)
T ss_pred             cchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHhCCcEEEEEeCCCCcch
Q 012056          246 AHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDL  325 (472)
Q Consensus       246 i~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~~~vIvvaEG~~~~~  325 (472)
                      +++||.|+++||||||+|||+|||||++++||+++||+|||||.||+++++.+++++|++|+++++|+|||||||+++.+
T Consensus       242 i~~tA~S~~~rv~iVEvMGR~aG~LAl~aaLA~~gad~iLIPE~pf~le~~~~ll~~i~~rl~~~~~~VIVVAEGagq~~  321 (484)
T PLN02564        242 AHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVIVVAEGAGQDL  321 (484)
T ss_pred             HHHHHHhcCCCEEEEEECCCCHHHHHHHHHHhhCCCCEEEeCCCCCCcchHHHHHHHHHHHHhccCCEEEEEeCCCccch
Confidence            99999999889999999999999999999999966999999999999998889999999999999999999999998877


Q ss_pred             hHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 012056          326 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG  405 (472)
Q Consensus       326 ~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G  405 (472)
                      +.+......++|++||++|+|++.+|+++|+++++.+.+..+++||++|||+|||++|+++||+||++||+.|||++++|
T Consensus       322 ~~~~~~~~~~~Da~Gn~~l~dig~~La~~I~~~~~~~~~~~~~~r~i~lgy~qRgg~p~a~Dri~a~~lG~~AV~~~~aG  401 (484)
T PLN02564        322 IAESMESSDLQDASGNKLLLDVGLWLSQKIKDHFTKVKKMPINLKYIDPTYMIRAIPSNASDNVYCTLLAHSAVHGAMAG  401 (484)
T ss_pred             hhhhhcccccccccCCcccCcHHHHHHHHHHHHhhhcccCCceEEEecCCchhcCCCCcHHHHHHHHHHHHHHHHHHHcC
Confidence            76544333468999999999999999999999985444556789999999999999999999999999999999999999


Q ss_pred             CCceEEEEECCeeeeechhhhhhcCCccCccHHHHHHHHHhcCCCCCCChHHHHHhhh
Q 012056          406 YTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPSFLSANELAKFKR  463 (472)
Q Consensus       406 ~tg~mvgi~~~~~~~vPl~~v~~~~~~v~~~~~~~~~~l~~t~qp~~~~~~~~~~~~~  463 (472)
                      +||+||+++|++++++||++++..+|+|++++.+|.++|++||||+|+++++....++
T Consensus       402 ~tg~mVg~~~~~~~~vPi~~~~~~~~~v~~~~~~w~~~l~~t~qp~f~~~~~~~~~~~  459 (484)
T PLN02564        402 YTGFTVGPVNGRHAYIPFYRITEKQNKVVITDRMWARLLSSTNQPSFLSPKDVLEAKR  459 (484)
T ss_pred             CCCEEEEEECCEEEEEEHHHHhccCCccCCChHHHHHHHHHcCCCCccCchhhhhhhh
Confidence            9999999999999999999999999999999999999999999999999877664443

>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>PTZ00286 6-phospho-1-fructokinase; Provisional Back     alignment and domain information
>PLN02884 6-phosphofructokinase Back     alignment and domain information
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated Back     alignment and domain information
>PRK14071 6-phosphofructokinase; Provisional Back     alignment and domain information
>PRK14072 6-phosphofructokinase; Provisional Back     alignment and domain information
>TIGR02483 PFK_mixed phosphofructokinase Back     alignment and domain information
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>TIGR02482 PFKA_ATP 6-phosphofructokinase Back     alignment and domain information
>PRK03202 6-phosphofructokinase; Provisional Back     alignment and domain information
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type Back     alignment and domain information
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase Back     alignment and domain information
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes [] Back     alignment and domain information
>PLN02251 pyrophosphate-dependent phosphofructokinase Back     alignment and domain information
>PTZ00468 phosphofructokinase family protein; Provisional Back     alignment and domain information
>PTZ00287 6-phosphofructokinase; Provisional Back     alignment and domain information
>PTZ00287 6-phosphofructokinase; Provisional Back     alignment and domain information
>PTZ00468 phosphofructokinase family protein; Provisional Back     alignment and domain information
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed Back     alignment and domain information
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators Back     alignment and domain information
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2 Back     alignment and domain information
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional Back     alignment and domain information
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase Back     alignment and domain information
>PLN02929 NADH kinase Back     alignment and domain information
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional Back     alignment and domain information
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only] Back     alignment and domain information
>PRK13337 putative lipid kinase; Reviewed Back     alignment and domain information
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems Back     alignment and domain information
>COG1609 PurR Transcriptional regulators [Transcription] Back     alignment and domain information
>PRK13055 putative lipid kinase; Reviewed Back     alignment and domain information
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional Back     alignment and domain information
>PRK13054 lipid kinase; Reviewed Back     alignment and domain information
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional Back     alignment and domain information
>PLN02727 NAD kinase Back     alignment and domain information
>PRK11914 diacylglycerol kinase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
2hig_A487 Crystal Structure Of Phosphofructokinase Apoenzyme 1e-72
1mto_A319 Crystal Structure Of A Phosphofructokinase Mutant F 9e-23
3pfk_A319 Phosphofructokinase. Structure And Control Length = 3e-22
6pfk_A319 Phosphofructokinase, Inhibited T-State Length = 319 3e-22
4a3s_A319 Crystal Structure Of Pfk From Bacillus Subtilis Len 4e-21
1pfk_A320 Crystal Structure Of The Complex Of Phosphofructoki 5e-20
1zxx_A319 The Crystal Structure Of Phosphofructokinase From L 3e-19
1kzh_A555 Structure Of A Pyrophosphate-dependent Phosphofruct 2e-17
3o8l_A 762 Structure Of Phosphofructokinase From Rabbit Skelet 1e-13
3opy_B 941 Crystal Structure Of Pichia Pastoris Phosphofructok 1e-13
3opy_B941 Crystal Structure Of Pichia Pastoris Phosphofructok 2e-04
3o8o_A 787 Structure Of Phosphofructokinase From Saccharomyces 5e-12
3o8o_B 766 Structure Of Phosphofructokinase From Saccharomyces 1e-11
3opy_A 989 Crystal Structure Of Pichia Pastoris Phosphofructok 8e-11
3k2q_A420 Crystal Structure Of Pyrophosphate-Dependent Phosph 3e-10
3hno_A419 Crystal Structure Of Pyrophosphate-Dependent Phosph 8e-07
>pdb|2HIG|A Chain A, Crystal Structure Of Phosphofructokinase Apoenzyme From Trypanosoma Brucei. Length = 487 Back     alignment and structure 
Iteration: 1

 Score =  270 bits (691), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 155/375 (41%), Positives = 225/375 (60%), Gaps = 14/375 (3%)
Query: 79  AGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFY- 137
           A  R +++F   E    IVTCGG+CPGLN VIR I     ++Y V +++G   GY G   
Sbjct: 85  AAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSK 144
Query: 138 --SKNTINLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKG 195
             S+  I L    V +IH  GGTILG+SRG  D  ++VD+++  G+N ++ +GGDGTQ+G
Sbjct: 145 KGSQTAIELHRGRVTNIHHYGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRG 204
Query: 196 AAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIEN 255
           A VI +E ++RG+ ++V G+PKTIDND+    ++FGF TAVE+A +AI AA+ EA S   
Sbjct: 205 ALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAYAEAVSANY 264
Query: 256 GIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVI 315
           G+GVVKLMGR  GFIA  A + S   + CL+PE+P     E  +   +E+R   +   VI
Sbjct: 265 GVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPI---SEQEVMSLLERRFCHSRSCVI 321
Query: 316 VIAEGAGQDLLAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAI---NLKYI 372
           ++AEG GQD    S       DASGNK L D+G+ ++ K+K  F + +K       +KYI
Sbjct: 322 IVAEGFGQDWGRGS----GGYDASGNKKLIDIGVILTEKVK-AFLKANKSRYPDSTVKYI 376
Query: 373 DPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRINERQNQ 432
           DP+YMIRA P +A+D ++C  LA  AVH A+AG TG  +   +  +  +P       +  
Sbjct: 377 DPSYMIRACPPSANDALFCATLATLAVHEAMAGATGCIIAMRHNNYILVPIKVATSVRRV 436
Query: 433 VVITDRMWARVLSST 447
           + +  ++W +V   T
Sbjct: 437 LDLRGQLWRQVREIT 451
>pdb|1MTO|A Chain A, Crystal Structure Of A Phosphofructokinase Mutant From Bacillus Stearothermophilus Bound With Fructose-6-Phosphate Length = 319 Back     alignment and structure
>pdb|3PFK|A Chain A, Phosphofructokinase. Structure And Control Length = 319 Back     alignment and structure
>pdb|6PFK|A Chain A, Phosphofructokinase, Inhibited T-State Length = 319 Back     alignment and structure
>pdb|4A3S|A Chain A, Crystal Structure Of Pfk From Bacillus Subtilis Length = 319 Back     alignment and structure
>pdb|1PFK|A Chain A, Crystal Structure Of The Complex Of Phosphofructokinase From Escherichia Coli With Its Reaction Products Length = 320 Back     alignment and structure
>pdb|1ZXX|A Chain A, The Crystal Structure Of Phosphofructokinase From Lactobacillus Delbrueckii Length = 319 Back     alignment and structure
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase From The Lyme Disease Spirochete Borrelia Burgdorferi Length = 555 Back     alignment and structure
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal Muscle Length = 762 Back     alignment and structure
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase In The T- State Length = 941 Back     alignment and structure
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase In The T- State Length = 941 Back     alignment and structure
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces Cerevisiae Length = 787 Back     alignment and structure
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces Cerevisiae Length = 766 Back     alignment and structure
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase In The T- State Length = 989 Back     alignment and structure
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target Mqr88 Length = 420 Back     alignment and structure
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent Phosphofructokinase From Nitrosospira Multiformis. Northeast Structural Genomics Consortium Target Id Nmr42 Length = 419 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query472
2hig_A487 6-phospho-1-fructokinase; transferase; 2.40A {Tryp 0.0
2f48_A555 Diphosphate--fructose-6-phosphate 1-phosphotransf; 1e-104
4a3s_A319 6-phosphofructokinase; transferase, glycolysis, de 3e-55
1pfk_A320 Phosphofructokinase; transferase(phosphotransferas 8e-55
1zxx_A319 6-phosphofructokinase; allosteric regulation, lact 5e-54
3hno_A419 Pyrophosphate-dependent phosphofructokinase; struc 3e-52
3o8o_B766 6-phosphofructokinase subunit beta; transferase; H 5e-50
3o8o_B 766 6-phosphofructokinase subunit beta; transferase; H 2e-41
3o8l_A762 6-phosphofructokinase, muscle type; transferase; H 4e-49
3o8l_A 762 6-phosphofructokinase, muscle type; transferase; H 3e-44
3opy_A989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 2e-48
3opy_A 989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 4e-42
3o8o_A787 6-phosphofructokinase subunit alpha; transferase; 4e-48
3o8o_A 787 6-phosphofructokinase subunit alpha; transferase; 5e-42
3opy_B941 6-phosphofructo-1-kinase beta-subunit; ATP binding 7e-47
3opy_B 941 6-phosphofructo-1-kinase beta-subunit; ATP binding 9e-43
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Length = 487 Back     alignment and structure
 Score =  566 bits (1461), Expect = 0.0
 Identities = 165/461 (35%), Positives = 245/461 (53%), Gaps = 26/461 (5%)

Query: 1   MGHSGNLQLKVVNGDAGYVLEDVPHLTDYIPDLP--TYPNPLQFNAAYSVVKQYFVNVDD 58
           +     +  K+V      +L  V      +  LP   YPNP +  ++       F +  D
Sbjct: 3   VESRSRVTSKLVKAH-RAMLNSVTQEDLKVDRLPGADYPNPSKKYSSR----TEFRDKTD 57

Query: 59  TVSQKIVV-------HKDSPRGTHFRRAGPRQKVYFVSDEVHACIVTCGGLCPGLNTVIR 111
            +             +  S        A  R +++F   E    IVTCGG+CPGLN VIR
Sbjct: 58  YIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIHFNPTETTIGIVTCGGICPGLNDVIR 117

Query: 112 EIVCGLYHMYGVSKILGIDGGYRGFY---SKNTINLTPKVVNDIHKRGGTILGTSRGGHD 168
            I     ++Y V +++G   GY G     S+  I L    V +IH  GGTILG+SRG  D
Sbjct: 118 SITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQD 177

Query: 169 TSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDK 228
             ++VD+++  G+N ++ +GGDGTQ+GA VI +E ++RG+ ++V G+PKTIDND+    +
Sbjct: 178 PKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHR 237

Query: 229 SFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPE 288
           +FGF TAVE+A +AI AA+ EA S   G+GVVKLMGR  GFIA  A + S   + CL+PE
Sbjct: 238 TFGFQTAVEKAVQAIRAAYAEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPE 297

Query: 289 SPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLAESLQSMNQQDASGNKLLQDVG 348
           +P   +    +   +E+R   +   VI++AEG GQD    S       DASGNK L D+G
Sbjct: 298 NPISEQ---EVMSLLERRFCHSRSCVIIVAEGFGQDWGRGS----GGYDASGNKKLIDIG 350

Query: 349 LWISHKIKDHFARLH--KMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAGY 406
           + ++ K+K              +KYIDP+YMIRA P +A+D ++C  LA  AVH A+AG 
Sbjct: 351 VILTEKVKAFLKANKSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMAGA 410

Query: 407 TGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSST 447
           TG  +   +  +  +P       +  + +  ++W +V   T
Sbjct: 411 TGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREIT 451
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A* Length = 555 Back     alignment and structure
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A* Length = 319 Back     alignment and structure
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Length = 320 Back     alignment and structure
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp} Length = 319 Back     alignment and structure
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Length = 419 Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 766 Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 766 Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Length = 762 Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Length = 762 Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 989 Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 989 Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 787 Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Length = 787 Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 941 Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Length = 941 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query472
2hig_A487 6-phospho-1-fructokinase; transferase; 2.40A {Tryp 100.0
1zxx_A319 6-phosphofructokinase; allosteric regulation, lact 100.0
1pfk_A320 Phosphofructokinase; transferase(phosphotransferas 100.0
3hno_A419 Pyrophosphate-dependent phosphofructokinase; struc 100.0
4a3s_A319 6-phosphofructokinase; transferase, glycolysis, de 100.0
3o8l_A762 6-phosphofructokinase, muscle type; transferase; H 100.0
3o8o_A787 6-phosphofructokinase subunit alpha; transferase; 100.0
3o8o_B766 6-phosphofructokinase subunit beta; transferase; H 100.0
3opy_B941 6-phosphofructo-1-kinase beta-subunit; ATP binding 100.0
2f48_A555 Diphosphate--fructose-6-phosphate 1-phosphotransf; 100.0
3opy_A989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 100.0
3o8l_A 762 6-phosphofructokinase, muscle type; transferase; H 100.0
3o8o_B 766 6-phosphofructokinase subunit beta; transferase; H 100.0
3o8o_A 787 6-phosphofructokinase subunit alpha; transferase; 100.0
3opy_A 989 6-phosphofructo-1-kinase alpha-subunit; ATP bindin 100.0
3opy_B 941 6-phosphofructo-1-kinase beta-subunit; ATP binding 100.0
2an1_A292 Putative kinase; structural genomics, PSI, protein 95.05
3g1w_A305 Sugar ABC transporter; sugar-binding protein, baci 93.05
2i2c_A272 Probable inorganic polyphosphate/ATP-NAD kinase 1; 93.02
1z0s_A278 Probable inorganic polyphosphate/ATP-NAD kinase; A 90.31
3kjx_A344 Transcriptional regulator, LACI family; LACL famil 90.2
3gv0_A288 Transcriptional regulator, LACI family; transcript 89.42
3h5o_A339 Transcriptional regulator GNTR; transcription regu 89.04
3egc_A291 Putative ribose operon repressor; structural genom 88.35
3k4h_A292 Putative transcriptional regulator; structural gen 88.16
3dbi_A338 Sugar-binding transcriptional regulator, LACI FAM; 88.02
3o74_A272 Fructose transport system repressor FRUR; dual tra 86.79
3qk7_A294 Transcriptional regulators; structural genomics, N 86.33
1yt5_A258 Inorganic polyphosphate/ATP-NAD kinase; domain 1: 84.76
3brq_A296 HTH-type transcriptional regulator ASCG; transcrip 82.51
3l49_A291 ABC sugar (ribose) transporter, periplasmic substr 82.24
3kke_A303 LACI family transcriptional regulator; structural 82.21
1u0t_A307 Inorganic polyphosphate/ATP-NAD kinase; alpha-beta 82.06
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-102  Score=822.98  Aligned_cols=420  Identities=38%  Similarity=0.625  Sum_probs=375.9

Q ss_pred             cccccchhhhCCC--CCCCcCCCCCCcccccccccccccchHHHHHHHhccCC-------CCcccccccCCcccccccCC
Q 012056           20 LEDVPHLTDYIPD--LPTYPNPLQFNAAYSVVKQYFVNVDDTVSQKIVVHKDS-------PRGTHFRRAGPRQKVYFVSD   90 (472)
Q Consensus        20 ~eav~al~~~~p~--~~~~~~~l~~n~~~~~~~~~~v~~t~~v~~~~~~~~~~-------~~~~~f~~~~~~~~~~~~~~   90 (472)
                      ++.|..+--.-|.  .|.+++||..|..    ...||++++.|+..+....+.       .....|+++|||+++||+++
T Consensus        21 ~~~~~~~~~~i~~lg~~~~~~p~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~agpr~~i~f~~~   96 (487)
T 2hig_A           21 LNSVTQEDLKVDRLPGADYPNPSKKYSS----RTEFRDKTDYIMYNPRPRDEPSSENPVSVSPLLCELAAARSRIHFNPT   96 (487)
T ss_dssp             CSSCCTTTTCCEECSCCCEECTTCCGGG----GGGSBSSCCEEESCCCBCC-----CCBBSCCCEEEECCCBSEESSCGG
T ss_pred             ccCCCccccccCcCCCCCCCCcccccCC----CCeeeCCCCEEEEeeeccCCCccccccccchHHHHHcCCcceeeecCC
Confidence            5666665333332  3788999976654    578999999998765432221       12346999999999999999


Q ss_pred             CeeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEccccccccc---CCeeccChhHHhhhhhcCCcccccccCCC
Q 012056           91 EVHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYS---KNTINLTPKVVNDIHKRGGTILGTSRGGH  167 (472)
Q Consensus        91 ~~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~---~~~~~L~~~~v~~~~~~GGs~LGssR~~~  167 (472)
                      .+||||+||||||||||++||++|+++...++..+||||++||+||++   +++++|+|++|++|+++|||+|||||+++
T Consensus        97 ~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGTiLGTsR~~~  176 (487)
T 2hig_A           97 ETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRGPQ  176 (487)
T ss_dssp             GCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSCCCCSCC
T ss_pred             CcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCCeeccCCCCC
Confidence            999999999999999999999999998765676799999999999964   68999999999999999999999999998


Q ss_pred             ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHHH
Q 012056          168 DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAH  247 (472)
Q Consensus       168 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i~  247 (472)
                      +.++++++|++++||+||+||||||+++|++|++++.+++++|+||||||||||||++||+|||||||+|+++++||+++
T Consensus       177 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~~~~eaId~i~  256 (487)
T 2hig_A          177 DPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVEKAVQAIRAAY  256 (487)
T ss_dssp             CHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHhCCcEEEEEeCCCCcchhH
Q 012056          248 VEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKENGHMVIVIAEGAGQDLLA  327 (472)
Q Consensus       248 ~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~~~~~vIvvaEG~~~~~~~  327 (472)
                      +||.||++||||||||||+|||||+++|||++.||+|||||.||+++   +++++|++|++.++|++||||||+++.+..
T Consensus       257 ~tA~Sh~~rv~vVEVMGR~aG~LAl~agLA~g~ad~ilIPE~p~~l~---~i~~~i~~r~~~k~~~IIvVaEGag~~~~~  333 (487)
T 2hig_A          257 AEAVSANYGVGVVKLMGRDSGFIAAQAAVASAQANICLVPENPISEQ---EVMSLLERRFCHSRSCVIIVAEGFGQDWGR  333 (487)
T ss_dssp             HHHHTSTTEEEEEEECCSSCCHHHHHHHHHHTCCSEEECTTSCCCHH---HHHHHHHHHTTSCSEEEEEEETTTTGGGCC
T ss_pred             HHHHhhcCcEEEEEeCCCCHHHHHHHHHHhhCCCCEEEeCCCCCCHH---HHHHHHHHHHhcCCcEEEEEeCCCcccccc
Confidence            99999977899999999999999999999993399999999999988   799999999988899999999999765442


Q ss_pred             HHHhhhhcccccCCccccchHHHHHHHHHHhhcccceee---eeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHc
Q 012056          328 ESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMA---INLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVA  404 (472)
Q Consensus       328 ~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~---~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~  404 (472)
                      .    ...+|++||+++++++.+|+++|+++++.. ...   +++|+++|||+|||++||++||+||++||.+||+++++
T Consensus       334 ~----~~~~Da~G~~~l~~i~~~l~~~i~~~~~~~-g~~~~~f~~R~~~lGh~QRgg~Psa~Dr~la~~lG~~AV~~l~~  408 (487)
T 2hig_A          334 G----SGGYDASGNKKLIDIGVILTEKVKAFLKAN-KSRYPDSTVKYIDPSYMIRACPPSANDALFCATLATLAVHEAMA  408 (487)
T ss_dssp             C------CBCTTSCBCCCCHHHHHHHHHHHHHHTT-TTTSSSCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             c----ccccccccCcchhHHHHHHHHHHHHHHhhc-CccccccceEEccCCcCccCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            2    235799999999999999999999988421 112   27899999999999999999999999999999999999


Q ss_pred             CCCceEEEEECCeeeeechhhhhhcCCccCccHHHHHHHHHhcCCCC
Q 012056          405 GYTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLSSTNQPS  451 (472)
Q Consensus       405 G~tg~mvgi~~~~~~~vPl~~v~~~~~~v~~~~~~~~~~l~~t~qp~  451 (472)
                      |+||+||++++++++++||++++...|++++++.+|+++++.++||.
T Consensus       409 G~tg~mVgi~~~~i~~vPl~ev~~~~k~v~~~~~~w~~~~~~~~~~~  455 (487)
T 2hig_A          409 GATGCIIAMRHNNYILVPIKVATSVRRVLDLRGQLWRQVREITVDLG  455 (487)
T ss_dssp             TEESEEEEEETTEEEEEEHHHHTTEEEEECTTSHHHHHHHHHSCCCC
T ss_pred             CCCCEEEEEECCEEEEEEHHHHHccCCCcCcchHHHHHHHHHhCCcc
Confidence            99999999999999999999999999999999999999999999986
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Back     alignment and structure
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Back     alignment and structure
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A* Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A* Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Back     alignment and structure
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris} Back     alignment and structure
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium} Back     alignment and structure
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125} Back     alignment and structure
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A* Back     alignment and structure
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* Back     alignment and structure
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} Back     alignment and structure
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str} Back     alignment and structure
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} Back     alignment and structure
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis} Back     alignment and structure
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} Back     alignment and structure
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Back     alignment and structure
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A* Back     alignment and structure
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis} Back     alignment and structure
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} Back     alignment and structure
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli} Back     alignment and structure
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Back     alignment and structure
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} Back     alignment and structure
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 472
d2f48a1550 c.89.1.1 (A:4-553) Pyrophosphate-dependent phospho 1e-66
d1pfka_320 c.89.1.1 (A:) ATP-dependent phosphofructokinase {E 1e-56
d4pfka_319 c.89.1.1 (A:) ATP-dependent phosphofructokinase {B 1e-54
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 550 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphofructokinase
superfamily: Phosphofructokinase
family: Phosphofructokinase
domain: Pyrophosphate-dependent phosphofructokinase
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

 Score =  221 bits (564), Expect = 1e-66
 Identities = 86/402 (21%), Positives = 141/402 (35%), Gaps = 73/402 (18%)

Query: 96  IVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKR 155
           I+  GG  PG + VI  +   +      SK+ G  GG  G    + I LT  ++N     
Sbjct: 74  IILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNT 133

Query: 156 GGTILGTSRGGH-----DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKV 210
           GG  + +S           +K +   ++  +N + IIGGD +   AA++ E  ++ G  +
Sbjct: 134 GGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENI 193

Query: 211 AVAGIPKTIDNDIP--VIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYCG 268
            V G+PKTID D+    I+ SFGFD+A +     I     +A S +     VKLMGR   
Sbjct: 194 QVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKKYWHFVKLMGRSAS 253

Query: 269 FIAMYATLGSRDVDCCL------------------------------------IPESPFY 292
            +A+   L +    C +                                    +PE    
Sbjct: 254 HVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIE 313

Query: 293 LEGE-GGLYEFIEKRLKENGHMVIVIAEGAGQDLLA--------------------ESLQ 331
              E   L   +     +N      +     +++                      E ++
Sbjct: 314 FIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIK 373

Query: 332 SMNQQDASGNKLLQDV--GLWISHKIKDHFARLHKMAINLKYIDP-----TYMIRAIPSN 384
           S+ ++D  GN  +  V         I+     + K         P      Y  R+   +
Sbjct: 374 SILERDPHGNFNVSRVPTEKLFIEMIQSRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPS 433

Query: 385 ASDNVYCTLLAQSAVHGAVAGYTGFTVGPVNGRHAYIPFNRI 426
             D+ YC  L  +AV   + G TG+     N      P + I
Sbjct: 434 NFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLN--LKPTDWI 473
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Length = 320 Back     information, alignment and structure
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 319 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query472
d4pfka_319 ATP-dependent phosphofructokinase {Bacillus stearo 100.0
d1pfka_320 ATP-dependent phosphofructokinase {Escherichia col 100.0
d2f48a1550 Pyrophosphate-dependent phosphofructokinase {Lyme 100.0
d1u0ta_302 Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob 84.93
d2qv7a1312 Diacylglycerol kinase DgkB {Staphylococcus aureus 84.2
d1z0sa1249 Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa 83.32
d1jyea_271 Lac-repressor (lacR) core (C-terminal domain) {Esc 83.04
d2bona1295 Lipid kinase YegS {Escherichia coli [TaxId: 562]} 81.6
d1dbqa_282 Purine repressor (PurR), C-terminal domain {Escher 81.49
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphofructokinase
superfamily: Phosphofructokinase
family: Phosphofructokinase
domain: ATP-dependent phosphofructokinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=6.7e-83  Score=644.93  Aligned_cols=311  Identities=29%  Similarity=0.409  Sum_probs=283.4

Q ss_pred             eeEEEEccCCCCCchhHHHHHHHHHHHHhcCCcEEEEEcccccccccCCeeccChhHHhhhhhcCCcccccccCCC----
Q 012056           92 VHACIVTCGGLCPGLNTVIREIVCGLYHMYGVSKILGIDGGYRGFYSKNTINLTPKVVNDIHKRGGTILGTSRGGH----  167 (472)
Q Consensus        92 ~~iaIltsGG~apGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~~~~~GGs~LGssR~~~----  167 (472)
                      +|||||||||||||||++|+++++.+..  .+.+|||+++||+||+++++++|+|+++++|+++|||+|||||++.    
T Consensus         2 krIaIl~sGG~~pgiNa~i~~~v~~~~~--~~~~v~g~~~G~~Gl~~~~~~~l~~~~~~~~~~~gGt~lgs~r~~~~~~~   79 (319)
T d4pfka_           2 KRIGVLTSGGDSPGMNAAIRSVVRKAIY--HGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHRGGTILYTARCPEFKTE   79 (319)
T ss_dssp             CEEEEEEESSCCTTHHHHHHHHHHHHHH--TTCEEEEESSHHHHHHTTCEEEECGGGGTTCTTCCSCTTCCCCCTTSSSH
T ss_pred             CEEEEECcCCCcHHHHHHHHHHHHHHHH--CCCEEEEEccchHHhcCCCcccCCHHHHHHHHhcCccccccCCCCccccc
Confidence            5999999999999999999999998854  3469999999999999999999999999999999999999999853    


Q ss_pred             -ChHHHHHHHHHhCCcEEEEEcCCCcHHHHHHHHHHHHHcCCCceeeccccccccCccCcCcccCchhHHHHHHHHHHHH
Q 012056          168 -DTSKIVDSIQDRGINQVYIIGGDGTQKGAAVIYEEIRQRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAA  246 (472)
Q Consensus       168 -~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~i~vvgIPkTIDNDi~gtd~S~GfdTA~~~~~~~i~~i  246 (472)
                       ++++++++|++++||+||+|||||||++|++|+++      .++|||||||||||+++||+||||+||+++++++|+++
T Consensus        80 ~~~~~~~~~l~~~~I~~li~iGG~~s~~~a~~L~~~------~~~vvgIPkTIDNDl~~td~t~Gf~TA~~~~~~~i~~l  153 (319)
T d4pfka_          80 EGQKKGIEQLKKHGIQGLVVIGGDGSYQGAKKLTEH------GFPCVGVPGTIDNDIPGTDFTIGFDTALNTVIDAIDKI  153 (319)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHT------TCCEEEEEBCSSCCCTTCSSCBTHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHhccceEEEecCchHHHHHHHHHhc------cCceeeeeeeccCCcCCccccccHHHHHHHHHHHHHHH
Confidence             46899999999999999999999999999999863      47799999999999999999999999999999999999


Q ss_pred             HHhhhcCcceEEEEEecCCCcchHHHHHhhccCCcceEecCCCCCCccchhhHHHHHHHHHHh-CCcEEEEEeCCCCcch
Q 012056          247 HVEAESIENGIGVVKLMGRYCGFIAMYATLGSRDVDCCLIPESPFYLEGEGGLYEFIEKRLKE-NGHMVIVIAEGAGQDL  325 (472)
Q Consensus       247 ~~~A~s~~~rv~iVEvMGr~~G~LA~~aaLA~~~ad~ilIPE~~~~l~~~~~~~~~i~~r~~~-~~~~vIvvaEG~~~~~  325 (472)
                      +++|+|+ +||||||+|||+|||||++++||+ +||++||||.||+++   ++++.|++++++ +++++||||||+... 
T Consensus       154 ~~~a~s~-~rv~ivEvMGR~aG~lA~~~~la~-~a~~iliPE~~~~~~---~~~~~i~~~~~~~k~~~ivvvsEG~~~~-  227 (319)
T d4pfka_         154 RDTATSH-ERTYVIEVMGRHAGDIALWSGLAG-GAETILIPEADYDMN---DVIARLKRGHERGKKHSIIIVAEGVGSG-  227 (319)
T ss_dssp             HHHHHHT-TCEEEEEECCSSCCHHHHHHHHHT-TCSEEECTTSCCCHH---HHHHHHHHHHHTTCSCEEEEEETTTCCH-
T ss_pred             HhhcccC-cceEEEEecCCCCcHHHHHhhccC-CCcEEEecCCCCCHH---HHHHHHHHHHhhcCCeeEEEEecccchh-
Confidence            9999987 479999999999999999999999 899999999999987   789999988876 588999999998642 


Q ss_pred             hHHHHhhhhcccccCCccccchHHHHHHHHHHhhcccceeeeeeeeeCCCccccCCCCChhhHHHHHHHHHHHHHHHHcC
Q 012056          326 LAESLQSMNQQDASGNKLLQDVGLWISHKIKDHFARLHKMAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAVAG  405 (472)
Q Consensus       326 ~~~~~~~~~~~D~~G~~~l~~ig~~l~~~I~~~~~~~~~~~~~l~~i~pgy~qRg~~p~a~Dr~~a~~lG~~AV~~~~~G  405 (472)
                                             ..+.+.+++.++.      .+|+..|||+|||++|+++||++|++||..||+++++|
T Consensus       228 -----------------------~~~~~~i~~~~g~------~~r~~~lG~~qRgg~ps~~Dr~~a~~lG~~Av~~~~~g  278 (319)
T d4pfka_         228 -----------------------VDFGRQIQEATGF------ETRVTVLGHVQRGGSPTAFDRVLASRLGARAVELLLEG  278 (319)
T ss_dssp             -----------------------HHHHHHHHHHHCC------CEEEEECGGGGGCSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -----------------------hhhhhhhhhhcCc------eeEEeecCchhcCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence                                   2456667776653      35678899999999999999999999999999999999


Q ss_pred             CCceEEEEECCeeeeechhhhhhcCCccCccHHHHHHHHH
Q 012056          406 YTGFTVGPVNGRHAYIPFNRINERQNQVVITDRMWARVLS  445 (472)
Q Consensus       406 ~tg~mvgi~~~~~~~vPl~~v~~~~~~v~~~~~~~~~~l~  445 (472)
                      +||+||++++++++++||++++.++|.++++...+.+.|+
T Consensus       279 ~sg~mv~i~~~~~~~vpl~~v~~~~k~v~~~l~~~~~~l~  318 (319)
T d4pfka_         279 KGGRCVGIQNNQLVDHDIAEALANKHTIDQRMYALSKELS  318 (319)
T ss_dssp             CCSEEEEEETTEEEEEEHHHHTTSCCCCCHHHHHHHHHHT
T ss_pred             CCCeEEEEECCEEEEEcHHHHHhcCCCCCHHHHHHHHhcC
Confidence            9999999999999999999999999999887666665543
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure