Citrus Sinensis ID: 012098

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-
MAATQLCSNSASLSKALTQNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPAKSQTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILPMC
ccccccccccccHHHHccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccEEEEccccHHHHHHHcccccEEEEcHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHccccEEEcHHHHHHHHHcccccccEEEEcccccHHHHHHHHHcccEEEEccHHHHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccEEEccccccEEccccccccccHHHHHHHHHHHHHccccEEEEEcccEEEEccccEEEEEEEEEEcccccEEEEccccccccHHHHHccccccEEcccccccccccEEEEEcccccccccccccccccccccccEEEEcccccccHHccccccccccccEEEEEccEEEEEEccc
ccHHHHcccccccccccccccccccccccccccccccccccccEHHHHccccccccccccccccccEEEccccEEEEccccHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHcccccEEEcHHHHHHHHHccccccEEEEEcccccHHHHHHHHHcccEEEEccHHHHHHHHHHHHHcccEEEEEEEEccccccccccEEccccccccccccHHHHHHHHHHHHHcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccEEccccccccccHHHHHHHHHHHHcccccEEEEccccHEEEcccEEEEEEEEEEccccccEEEEEHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccccHHcccccccccccccEEEEEEccccEEEEcccccccccccEEEEccccEEEEEccc
MAATQLCSNSASLSKaltqnpfpkipisplkttlnfqrtlkpftlkavlsqnpaksqthtapvehcfskkadgflycedvrVQDVMEtvekrpfylyskpqITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALragfdptkcifngngkLLEDLVLAAQEgvfvnvdsefdlENIVVASRIAGKKVNVLLRinpdvdpqvhpyvatgnknskfgiRNEKLQWFLDAVKAHPNELKLVGAhchlgstitkvDIFRDAAVLMVNYIDKIRAqgfevdylniggglgidyyhtgavlpkprnlIDTVRELVLSRNLnliiepgrsliaNTCCLvnhvtgvktngtkNFIVIDGSMAELIRPSLYDAYqhielvspapqdaeiskfdvvgpvcesadflgkerelptpdrgaglvvhDAGAYCMSMAStynlkmrppeyWVRSLISIIILPMC
MAATQLCSNSASLSKAltqnpfpkipisplKTTLNFQRTLKPFTLKAVLSQnpaksqthtapvehcfskKADGFLYCEDVRVQDVMEtvekrpfylyskpqiTRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPyvatgnknskfgIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVtgvktngtkNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLgkerelptpdrGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILPMC
MAATQLCSNSASLSKALTQNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPAKSQTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILPMC
**************************ISPLKTTLNFQRTLKPFTLKAVL***********APVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE******DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP**
****************************************************************HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILPMC
***********SLSKALTQNPFPKIPISPLKTTLNFQRTLKPFTLKAVLS************VEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILPMC
**************K****NPFPKIPISPLKTTLNFQRTLKPFTLKAVLS***********PVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILPMC
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAATQLCSNSASLSKALTQNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPAKSQTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILPMC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query471 2.2.26 [Sep-21-2011]
Q94A94489 Diaminopimelate decarboxy yes no 0.978 0.942 0.800 0.0
Q949X7484 Diaminopimelate decarboxy no no 0.972 0.946 0.805 0.0
Q6ZG77490 Probable diaminopimelate yes no 0.851 0.818 0.803 0.0
P19572415 Diaminopimelate decarboxy yes no 0.819 0.930 0.379 1e-69
Q9JXM2414 Diaminopimelate decarboxy yes no 0.787 0.896 0.399 3e-69
Q9JWA6406 Diaminopimelate decarboxy yes no 0.791 0.918 0.401 3e-69
O67262420 Diaminopimelate decarboxy yes no 0.813 0.911 0.386 3e-69
Q9KVL7417 Diaminopimelate decarboxy yes no 0.819 0.925 0.377 6e-66
O29458419 Diaminopimelate decarboxy yes no 0.796 0.894 0.379 3e-65
O05321416 Diaminopimelate decarboxy yes no 0.804 0.911 0.366 1e-61
>sp|Q94A94|DCDA2_ARATH Diaminopimelate decarboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=LYSA2 PE=2 SV=1 Back     alignment and function desciption
 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/471 (80%), Positives = 407/471 (86%), Gaps = 10/471 (2%)

Query: 2   AATQLCSNSASLSKALTQ-----NPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPAKS 56
           A TQ  S  +S+   L Q         +IP   LK+TL   + LK  ++KA +SQN  K+
Sbjct: 3   AVTQFLSQPSSIRGTLNQYQLNQTSLSRIPFLSLKSTL---KPLKRLSVKAAVSQNSTKT 59

Query: 57  QTH--TAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALE 114
            T    +  +HCF K +DGFLYCE  +VQD+METVEKRPFYLYSKPQITRN+EAYK+ALE
Sbjct: 60  LTKESASSFDHCFKKSSDGFLYCEGTKVQDIMETVEKRPFYLYSKPQITRNLEAYKEALE 119

Query: 115 GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLE 174
           G+ S+IGYAIKANNN KILEHLR LGCGAVLVSGNELRLAL AGFDPTKCIFNGNGK LE
Sbjct: 120 GVRSVIGYAIKANNNLKILEHLRSLGCGAVLVSGNELRLALLAGFDPTKCIFNGNGKSLE 179

Query: 175 DLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSK 234
           DLVLAAQEGVFVNVDSEFDL NIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNKNSK
Sbjct: 180 DLVLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSK 239

Query: 235 FGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGF 294
           FGIRNEKLQWFLD VKAHP ELKLVGAHCHLGSTITKVDIFRDAAVLM+ YID+IR QGF
Sbjct: 240 FGIRNEKLQWFLDEVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGF 299

Query: 295 EVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVN 354
           EV YLNIGGGLGIDYYH GAVLP P +LI+TVRELVLSR+LNLIIEPGRSLIANTCC VN
Sbjct: 300 EVSYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVN 359

Query: 355 HVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESA 414
           HVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSP P +AE++KFDVVGPVCESA
Sbjct: 360 HVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPTPPEAEVTKFDVVGPVCESA 419

Query: 415 DFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465
           DFLGK+RELPTP +GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV    SI
Sbjct: 420 DFLGKDRELPTPPQGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSI 470
Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0
>sp|Q949X7|DCDA1_ARATH Diaminopimelate decarboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=LYSA1 PE=1 SV=1 Back     alignment and function description
>sp|Q6ZG77|DCDA_ORYSJ Probable diaminopimelate decarboxylase, chloroplastic OS=Oryza sativa subsp. japonica GN=LYSA PE=2 SV=1 Back     alignment and function description
>sp|P19572|DCDA_PSEAE Diaminopimelate decarboxylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=lysA PE=3 SV=2 Back     alignment and function description
>sp|Q9JXM2|DCDA_NEIMB Diaminopimelate decarboxylase OS=Neisseria meningitidis serogroup B (strain MC58) GN=lysA PE=3 SV=1 Back     alignment and function description
>sp|Q9JWA6|DCDA_NEIMA Diaminopimelate decarboxylase OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=lysA PE=3 SV=1 Back     alignment and function description
>sp|O67262|DCDA_AQUAE Diaminopimelate decarboxylase OS=Aquifex aeolicus (strain VF5) GN=lysA PE=1 SV=1 Back     alignment and function description
>sp|Q9KVL7|DCDA_VIBCH Diaminopimelate decarboxylase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=lysA PE=1 SV=1 Back     alignment and function description
>sp|O29458|DCDA_ARCFU Diaminopimelate decarboxylase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=lysA PE=3 SV=1 Back     alignment and function description
>sp|O05321|DCDA_PSEFL Diaminopimelate decarboxylase OS=Pseudomonas fluorescens GN=lysA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query471
255543757488 diaminopimelate decarboxylase, putative 0.970 0.936 0.842 0.0
224103381482 predicted protein [Populus trichocarpa] 0.961 0.939 0.834 0.0
225428408485 PREDICTED: diaminopimelate decarboxylase 0.955 0.927 0.833 0.0
449462206482 PREDICTED: diaminopimelate decarboxylase 0.959 0.937 0.830 0.0
225465560564 PREDICTED: diaminopimelate decarboxylase 0.963 0.804 0.836 0.0
224080381487 predicted protein [Populus trichocarpa] 0.951 0.919 0.847 0.0
357483875483 Diaminopimelate decarboxylase [Medicago 0.966 0.942 0.814 0.0
297811305492 hypothetical protein ARALYDRAFT_488028 [ 0.978 0.936 0.795 0.0
18416698489 diaminopimelate decarboxylase 2 [Arabido 0.978 0.942 0.800 0.0
397787606485 putative diaminopimelate decarboxylase [ 0.978 0.950 0.813 0.0
>gi|255543757|ref|XP_002512941.1| diaminopimelate decarboxylase, putative [Ricinus communis] gi|223547952|gb|EEF49444.1| diaminopimelate decarboxylase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/464 (84%), Positives = 416/464 (89%), Gaps = 7/464 (1%)

Query: 2   AATQLCSNSASLSKALT-----QNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPAKS 56
           A T   ++  +LSK +T     QNPF K    P+K T    + L   TLKAVLSQNP  +
Sbjct: 3   ATTTHLAHPPTLSKNITFHHLKQNPFLKTSTLPVKFTRTSPKPLS-LTLKAVLSQNPTLT 61

Query: 57  QTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGL 116
           Q  TA  +HCF+K  DGFLYCE+++VQDVME+VEKRPFYLYSKPQITRNVEAYK ALEGL
Sbjct: 62  Q-ETAQFKHCFTKSNDGFLYCENLKVQDVMESVEKRPFYLYSKPQITRNVEAYKSALEGL 120

Query: 117 NSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL 176
           NSIIGYAIKANNN+KILEHLR+LGCGAVLVSGNELRLALRAG+DP KCIFNGNGKLLEDL
Sbjct: 121 NSIIGYAIKANNNFKILEHLRQLGCGAVLVSGNELRLALRAGYDPKKCIFNGNGKLLEDL 180

Query: 177 VLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG 236
           VLAA+EGVFVNVDSEFDLENIV ASRIAG+K+NVLLRINPDVDPQVHPYVATGNKNSKFG
Sbjct: 181 VLAAEEGVFVNVDSEFDLENIVAASRIAGEKINVLLRINPDVDPQVHPYVATGNKNSKFG 240

Query: 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEV 296
           IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYID+IRAQGFE+
Sbjct: 241 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDEIRAQGFEI 300

Query: 297 DYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHV 356
           DYLNIGGGLGIDYYH GAVLP PR+LIDTVRELVLSRNLNLIIEPGRSLIANTCCLVN V
Sbjct: 301 DYLNIGGGLGIDYYHAGAVLPTPRDLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNRV 360

Query: 357 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADF 416
           TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPA    E+S FDVVGPVCESADF
Sbjct: 361 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAQPIVEVSTFDVVGPVCESADF 420

Query: 417 LGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
           LGK RELPTP +GAGLVVHDAGAYCMSMASTYNLKMRPPEYW+ 
Sbjct: 421 LGKGRELPTPSKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWIE 464

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224103381|ref|XP_002313033.1| predicted protein [Populus trichocarpa] gi|222849441|gb|EEE86988.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225428408|ref|XP_002283712.1| PREDICTED: diaminopimelate decarboxylase 2, chloroplastic isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449462206|ref|XP_004148832.1| PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Cucumis sativus] gi|449524272|ref|XP_004169147.1| PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225465560|ref|XP_002275012.1| PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224080381|ref|XP_002306119.1| predicted protein [Populus trichocarpa] gi|222849083|gb|EEE86630.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357483875|ref|XP_003612224.1| Diaminopimelate decarboxylase [Medicago truncatula] gi|355513559|gb|AES95182.1| Diaminopimelate decarboxylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297811305|ref|XP_002873536.1| hypothetical protein ARALYDRAFT_488028 [Arabidopsis lyrata subsp. lyrata] gi|297319373|gb|EFH49795.1| hypothetical protein ARALYDRAFT_488028 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18416698|ref|NP_568252.1| diaminopimelate decarboxylase 2 [Arabidopsis thaliana] gi|75306321|sp|Q94A94.1|DCDA2_ARATH RecName: Full=Diaminopimelate decarboxylase 2, chloroplastic; Short=DAP decarboxylase 2; Short=DAPDC 2; Flags: Precursor gi|15146250|gb|AAK83608.1| AT5g11880/F14F18_50 [Arabidopsis thaliana] gi|22655428|gb|AAM98306.1| At5g11880/F14F18_50 [Arabidopsis thaliana] gi|332004351|gb|AED91734.1| diaminopimelate decarboxylase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|397787606|gb|AFO66512.1| putative diaminopimelate decarboxylase [Brassica napus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query471
TAIR|locus:2143054489 AT5G11880 [Arabidopsis thalian 0.966 0.930 0.806 1.1e-199
TAIR|locus:2091055484 AT3G14390 [Arabidopsis thalian 0.959 0.933 0.812 2.2e-199
TIGR_CMR|SO_4309414 SO_4309 "diaminopimelate decar 0.806 0.917 0.402 1.6e-70
TIGR_CMR|GSU_0158417 GSU_0158 "diaminopimelate deca 0.800 0.904 0.384 5.2e-65
UNIPROTKB|Q9KVL7417 lysA "Diaminopimelate decarbox 0.819 0.925 0.374 1.6e-63
TIGR_CMR|VC_0125417 VC_0125 "diaminopimelate decar 0.819 0.925 0.374 1.6e-63
TIGR_CMR|CPS_1240420 CPS_1240 "diaminopimelate deca 0.830 0.930 0.355 8.8e-63
TIGR_CMR|SPO_0334421 SPO_0334 "diaminopimelate deca 0.838 0.938 0.345 5.3e-56
TIGR_CMR|CJE_0359402 CJE_0359 "diaminopimelate deca 0.743 0.870 0.359 5.6e-52
TIGR_CMR|ECH_0485420 ECH_0485 "diaminopimelate deca 0.804 0.902 0.321 1.4e-48
TAIR|locus:2143054 AT5G11880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1933 (685.5 bits), Expect = 1.1e-199, P = 1.1e-199
 Identities = 375/465 (80%), Positives = 405/465 (87%)

Query:     2 AATQLCSNSASLSKALTQ-----NPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPAKS 56
             A TQ  S  +S+   L Q         +IP   LK+TL   + LK  ++KA +SQN  K+
Sbjct:     3 AVTQFLSQPSSIRGTLNQYQLNQTSLSRIPFLSLKSTL---KPLKRLSVKAAVSQNSTKT 59

Query:    57 QTH--TAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALE 114
              T    +  +HCF K +DGFLYCE  +VQD+METVEKRPFYLYSKPQITRN+EAYK+ALE
Sbjct:    60 LTKESASSFDHCFKKSSDGFLYCEGTKVQDIMETVEKRPFYLYSKPQITRNLEAYKEALE 119

Query:   115 GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLE 174
             G+ S+IGYAIKANNN KILEHLR LGCGAVLVSGNELRLAL AGFDPTKCIFNGNGK LE
Sbjct:   120 GVRSVIGYAIKANNNLKILEHLRSLGCGAVLVSGNELRLALLAGFDPTKCIFNGNGKSLE 179

Query:   175 DLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSK 234
             DLVLAAQEGVFVNVDSEFDL NIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNKNSK
Sbjct:   180 DLVLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSK 239

Query:   235 FGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGF 294
             FGIRNEKLQWFLD VKAHP ELKLVGAHCHLGSTITKVDIFRDAAVLM+ YID+IR QGF
Sbjct:   240 FGIRNEKLQWFLDEVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGF 299

Query:   295 EVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVN 354
             EV YLNIGGGLGIDYYH GAVLP P +LI+TVRELVLSR+LNLIIEPGRSLIANTCC VN
Sbjct:   300 EVSYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVN 359

Query:   355 HVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESA 414
             HVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSP P +AE++KFDVVGPVCESA
Sbjct:   360 HVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPTPPEAEVTKFDVVGPVCESA 419

Query:   415 DFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
             DFLGK+RELPTP +GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV
Sbjct:   420 DFLGKDRELPTPPQGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 464
GO:0003824 "catalytic activity" evidence=IEA
GO:0008836 "diaminopimelate decarboxylase activity" evidence=IEA;IGI;ISS
GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2091055 AT3G14390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4309 SO_4309 "diaminopimelate decarboxylase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0158 GSU_0158 "diaminopimelate decarboxylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVL7 lysA "Diaminopimelate decarboxylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0125 VC_0125 "diaminopimelate decarboxylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_1240 CPS_1240 "diaminopimelate decarboxylase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0334 SPO_0334 "diaminopimelate decarboxylase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0359 CJE_0359 "diaminopimelate decarboxylase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0485 ECH_0485 "diaminopimelate decarboxylase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P44316DCDA_HAEIN4, ., 1, ., 1, ., 2, 00.35690.82160.9325yesno
Q949X7DCDA1_ARATH4, ., 1, ., 1, ., 2, 00.80590.97230.9462nono
Q6ZG77DCDA_ORYSJ4, ., 1, ., 1, ., 2, 00.80340.85130.8183yesno
Q9Z661DCDA_ZYMMO4, ., 1, ., 1, ., 2, 00.34960.80460.9002yesno
P19572DCDA_PSEAE4, ., 1, ., 1, ., 2, 00.37970.81950.9301yesno
O05321DCDA_PSEFL4, ., 1, ., 1, ., 2, 00.36660.80460.9110yesno
Q9KVL7DCDA_VIBCH4, ., 1, ., 1, ., 2, 00.37720.81950.9256yesno
O67262DCDA_AQUAE4, ., 1, ., 1, ., 2, 00.38610.81310.9119yesno
Q94A94DCDA2_ARATH4, ., 1, ., 1, ., 2, 00.80040.97870.9427yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.1.1.200.979
3rd Layer4.1.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query471
PLN02537410 PLN02537, PLN02537, diaminopimelate decarboxylase 0.0
cd06828373 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-pho 1e-162
TIGR01048414 TIGR01048, lysA, diaminopimelate decarboxylase 1e-123
COG0019394 COG0019, LysA, Diaminopimelate decarboxylase [Amin 1e-116
cd06810368 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyrido 2e-88
PRK08961861 PRK08961, PRK08961, bifunctional aspartate kinase/ 2e-62
cd06840368 cd06840, PLPDE_III_Bif_AspK_DapDC, Type III Pyrido 4e-60
cd06839382 cd06839, PLPDE_III_Btrk_like, Type III Pyridoxal 5 1e-58
cd06841379 cd06841, PLPDE_III_MccE_like, Type III Pyridoxal 5 3e-55
pfam02784245 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent deca 1e-49
PRK11165420 PRK11165, PRK11165, diaminopimelate decarboxylase; 9e-46
cd06808211 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate 3e-42
cd00622362 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosp 4e-41
TIGR03099398 TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decar 2e-40
cd06836379 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyri 7e-39
cd06842423 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5 6e-34
pfam00278110 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent de 9e-29
cd06843377 cd06843, PLPDE_III_PvsE_like, Type III Pyridoxal 5 1e-27
cd06830409 cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosp 6e-18
TIGR01273 624 TIGR01273, speA, arginine decarboxylase, biosynthe 4e-13
PRK05354 634 PRK05354, PRK05354, arginine decarboxylase; Provis 2e-11
COG1166 652 COG1166, SpeA, Arginine decarboxylase (spermidine 6e-09
pfam01168217 pfam01168, Ala_racemase_N, Alanine racemase, N-ter 2e-07
cd06831394 cd06831, PLPDE_III_ODC_like_AZI, Type III Pyridoxa 7e-06
cd06829346 cd06829, PLPDE_III_CANSDC, Type III Pyridoxal 5-ph 2e-05
>gnl|CDD|178152 PLN02537, PLN02537, diaminopimelate decarboxylase Back     alignment and domain information 
 Score =  834 bits (2157), Expect = 0.0
 Identities = 355/385 (92%), Positives = 370/385 (96%)

Query: 75  LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
           LYCE +RVQD+ME+VEKRPFYLYSKPQITRN EAYK+ALEGL SIIGYAIKANNN KILE
Sbjct: 1   LYCEGLRVQDIMESVEKRPFYLYSKPQITRNYEAYKEALEGLRSIIGYAIKANNNLKILE 60

Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDL 194
           HLR+LGCGAVLVSGNELRLALRAGFDPT+CIFNGNGKLLEDLVLAAQEGVFVNVDSEFDL
Sbjct: 61  HLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDL 120

Query: 195 ENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPN 254
           ENIV A+RIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPN
Sbjct: 121 ENIVEAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPN 180

Query: 255 ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGA 314
           ELKLVGAHCHLGSTITKVDIFRDAAVLMVNY+D+IRAQGFE+ YLNIGGGLGIDYYH GA
Sbjct: 181 ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYVDEIRAQGFELSYLNIGGGLGIDYYHAGA 240

Query: 315 VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSM 374
           VLP PR+LIDTVRELVLSR+L LIIEPGRSLIANTCC VN VTGVKTNGTKNFIVIDGSM
Sbjct: 241 VLPTPRDLIDTVRELVLSRDLTLIIEPGRSLIANTCCFVNRVTGVKTNGTKNFIVIDGSM 300

Query: 375 AELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVV 434
           AELIRPSLYDAYQHIELVSP P DAE+S FDVVGPVCESADFLGK+RELPTP +GAGLVV
Sbjct: 301 AELIRPSLYDAYQHIELVSPPPPDAEVSTFDVVGPVCESADFLGKDRELPTPPKGAGLVV 360

Query: 435 HDAGAYCMSMASTYNLKMRPPEYWV 459
           HDAGAYCMSMASTYNLKMRPPEYWV
Sbjct: 361 HDAGAYCMSMASTYNLKMRPPEYWV 385

Length = 410
>gnl|CDD|143501 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>gnl|CDD|233248 TIGR01048, lysA, diaminopimelate decarboxylase Back     alignment and domain information
>gnl|CDD|223098 COG0019, LysA, Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|143485 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>gnl|CDD|143507 cd06840, PLPDE_III_Bif_AspK_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>gnl|CDD|143506 cd06839, PLPDE_III_Btrk_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>gnl|CDD|143508 cd06841, PLPDE_III_MccE_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>gnl|CDD|217230 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent decarboxylase, pyridoxal binding domain Back     alignment and domain information
>gnl|CDD|236867 PRK11165, PRK11165, diaminopimelate decarboxylase; Provisional Back     alignment and domain information
>gnl|CDD|143484 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>gnl|CDD|143482 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information
>gnl|CDD|132143 TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decarboxylase, exosortase A system-associated Back     alignment and domain information
>gnl|CDD|143505 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>gnl|CDD|143509 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>gnl|CDD|215835 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent decarboxylase, C-terminal sheet domain Back     alignment and domain information
>gnl|CDD|143510 cd06843, PLPDE_III_PvsE_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>gnl|CDD|143503 cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>gnl|CDD|233337 TIGR01273, speA, arginine decarboxylase, biosynthetic Back     alignment and domain information
>gnl|CDD|235427 PRK05354, PRK05354, arginine decarboxylase; Provisional Back     alignment and domain information
>gnl|CDD|224088 COG1166, SpeA, Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|216340 pfam01168, Ala_racemase_N, Alanine racemase, N-terminal domain Back     alignment and domain information
>gnl|CDD|143504 cd06831, PLPDE_III_ODC_like_AZI, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>gnl|CDD|143502 cd06829, PLPDE_III_CANSDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 471
COG0019394 LysA Diaminopimelate decarboxylase [Amino acid tra 100.0
PLN02537410 diaminopimelate decarboxylase 100.0
TIGR01048417 lysA diaminopimelate decarboxylase. This family co 100.0
cd06830409 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP) 100.0
PRK11165420 diaminopimelate decarboxylase; Provisional 100.0
cd06836379 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-ph 100.0
cd06840368 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phos 100.0
TIGR01047380 nspC carboxynorspermidine decarboxylase. This prot 100.0
TIGR03099398 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, ex 100.0
cd06843377 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate 100.0
cd06828373 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PL 100.0
cd06841379 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate 100.0
KOG0622448 consensus Ornithine decarboxylase [Amino acid tran 100.0
cd06839382 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate 100.0
cd06831394 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosph 100.0
cd06810368 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phos 100.0
cd06829346 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (P 100.0
cd06842423 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate 100.0
PRK08961861 bifunctional aspartate kinase/diaminopimelate deca 100.0
cd00622362 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP) 100.0
PRK05354634 arginine decarboxylase; Provisional 100.0
TIGR01273624 speA arginine decarboxylase, biosynthetic. A disti 100.0
PLN02439559 arginine decarboxylase 100.0
COG1166 652 SpeA Arginine decarboxylase (spermidine biosynthes 100.0
PF02784251 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, 100.0
cd00430367 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)- 100.0
TIGR00492367 alr alanine racemase. This enzyme interconverts L- 100.0
cd06808211 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dep 99.98
cd06819358 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate ( 99.97
PRK00053363 alr alanine racemase; Reviewed 99.97
PRK13340406 alanine racemase; Reviewed 99.97
cd06826365 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP) 99.97
cd06818382 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phospha 99.96
cd06812374 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-pho 99.96
cd06827354 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosp 99.96
cd06813388 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-pho 99.94
cd06820353 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosph 99.94
cd06825368 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP 99.94
cd06821361 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP 99.94
COG0787360 Alr Alanine racemase [Cell envelope biogenesis, ou 99.94
cd06811382 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate 99.93
cd06815353 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate 99.93
PRK03646355 dadX alanine racemase; Reviewed 99.92
PRK11930822 putative bifunctional UDP-N-acetylmuramoyl-tripept 99.91
cd07376345 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosp 99.91
cd00635222 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosph 99.88
PF00278116 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase 99.87
cd06817389 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP) 99.87
cd06814379 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-pho 99.86
PF01168218 Ala_racemase_N: Alanine racemase, N-terminal domai 99.84
cd06824224 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-bi 99.75
TIGR00044229 pyridoxal phosphate enzyme, YggS family. Members o 99.74
COG3616368 Predicted amino acid aldolase or racemase [Amino a 99.69
cd06822227 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)- 99.43
COG3457353 Predicted amino acid racemase [Amino acid transpor 99.41
COG0325228 Predicted enzyme with a TIM-barrel fold [General f 99.38
KOG3157244 consensus Proline synthetase co-transcribed protei 98.51
PF00842129 Ala_racemase_C: Alanine racemase, C-terminal domai 96.7
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 89.42
cd07948262 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s 84.64
PRK06801286 hypothetical protein; Provisional 82.44
cd07947279 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt 81.46
PRK08195337 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac 81.19
PF01261213 AP_endonuc_2: Xylose isomerase-like TIM barrel; In 80.04
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.9e-80  Score=628.64  Aligned_cols=386  Identities=41%  Similarity=0.657  Sum_probs=356.1

Q ss_pred             eeccCCeEEEcCcCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcC
Q 012098           68 SKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVS  147 (471)
Q Consensus        68 ~~~~~g~l~~~~i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS  147 (471)
                      ....+|.++++++++.++++++ +||+||||++.|++|+++|+++++..+++++||+|||+++.|+++|.+.|.|+||+|
T Consensus         4 ~~~~~~~l~~~~~~~~~l~~~~-gTP~yvyd~~~l~~~~~~~~~a~~~~~~~i~yAvKAn~~~~il~~l~~~g~g~Dv~S   82 (394)
T COG0019           4 FRNKDGELTIEGVDLPALAEEF-GTPVYVYDEATLRRNARELKSAFPGSGAKVFYAVKANSNPAILRLLAEEGSGFDVAS   82 (394)
T ss_pred             ccccccceeecCccHHHHhhcc-CCCEEEEcHHHHHHHHHHHHHHhccCCceEEEEEcCCCCHHHHHHHHHhCCCceecC
Confidence            3456889999999999999997 999999999999999999999999877899999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCccc
Q 012098          148 GNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYV  226 (471)
Q Consensus       148 ~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~  226 (471)
                      .+|+++|+++|++|++|+|+|++|+.++|+.|++.|+. |++||++||++|.+.++..  +.+|+|||||+.+...|+.+
T Consensus        83 ~gEl~~al~aG~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS~~El~~l~~~a~~~--~~~v~lRInP~~~~~th~~~  160 (394)
T COG0019          83 LGELELALAAGFPPERIVFSGPAKSEEEIAFALELGIKLINVDSEEELERLSAIAPGL--VARVSLRINPGVSAGTHEYI  160 (394)
T ss_pred             HHHHHHHHHcCCChhhEEECCCCCCHHHHHHHHHcCCcEEEeCCHHHHHHHHHhcccc--CceEEEEECCCCCCccCccc
Confidence            99999999999999999999999999999999999997 9999999999999987654  68999999999999999999


Q ss_pred             ccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCCCCEEEecCCC
Q 012098          227 ATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIR-AQGFEVDYLNIGGGL  305 (471)
Q Consensus       227 ~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~-~~g~~l~~ldiGGGl  305 (471)
                      +||...+|||++.+++.++++.+++.+ ++++.|||||+|||+.|.+.|.++++.+.+++.++. +.|+++++||+|||+
T Consensus       161 ~tg~~~sKFG~~~~~a~~~~~~~~~~~-~l~~~Glh~HiGSq~~d~~~~~~a~~~~~~~~~~~~~~~g~~l~~inlGGG~  239 (394)
T COG0019         161 ATGGKSSKFGISPEEALDVLERAAKLL-GLELVGLHFHIGSQITDLDPFEEALAKVEELFGRLAEELGIQLEWLNLGGGL  239 (394)
T ss_pred             cCCccccccCCCHHHHHHHHHHHHhcC-CCceEEEEEeecCCCCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCCc
Confidence            999999999999999888888877776 899999999999999999999999999999999995 579999999999999


Q ss_pred             CcCCCCCCCCCCCHHHHHHHHHHHHhc--CCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhh
Q 012098          306 GIDYYHTGAVLPKPRNLIDTVRELVLS--RNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLY  383 (471)
Q Consensus       306 ~i~y~~~~~~~~~~~~~~~~i~~~~~~--~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~  383 (471)
                      |++|.. +...+++.++++.+++.+.+  .+++|++||||+++++||+|+|+|..+|+.++++|+++|+||+++++|.+|
T Consensus       240 gi~Y~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~EPGR~iv~~aG~Lvt~V~~~k~~~~~~~v~vD~gm~~~~rpaly  318 (394)
T COG0019         240 GITYED-EYDPPDLAAYAKALKEAFGEYAEDVELILEPGRAIVANAGVLVTEVLDVKENGERNFVIVDGGMNDLMRPALY  318 (394)
T ss_pred             CcCCCC-CCCCcCHHHHHHHHHHHHhhccCCCeEEEccchhhhhcceeEEEEEEEEEEecCceEEEEechhccCcCHHHc
Confidence            999986 34456788899999998876  578999999999999999999999999998768999999999999999999


Q ss_pred             hcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCC-CCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 012098          384 DAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP-DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV  459 (471)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~-~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v  459 (471)
                      +++|++.+ .....+.+...++|+||+|+++|+|.+++.||+. ++||+|+|.++|||+++|+++||++|+|++|++
T Consensus       319 ~a~~~~~~-~~~~~~~~~~~~~v~G~~CesgD~~~~d~~lp~~~~~GD~l~i~~aGAY~~sm~s~yN~~~~~~ev~v  394 (394)
T COG0019         319 GAYHHIRL-NRTDEDAEREEYDVVGPTCESGDVLARDRALPEPLKVGDLLVILDAGAYGASMSSNYNGRPRPAEVLV  394 (394)
T ss_pred             CCcccccc-ccccCCCCeEEEEEECCCcCCCCeeeeeeeCCCCCCCCCEEEEcccchhhhhhhccccCCCCCceeeC
Confidence            99988765 2222234467889999999999999999999985 599999999999999999999999999999975

>PLN02537 diaminopimelate decarboxylase Back     alignment and domain information
>TIGR01048 lysA diaminopimelate decarboxylase Back     alignment and domain information
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>PRK11165 diaminopimelate decarboxylase; Provisional Back     alignment and domain information
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>TIGR01047 nspC carboxynorspermidine decarboxylase Back     alignment and domain information
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated Back     alignment and domain information
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase Back     alignment and domain information
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information
>PRK05354 arginine decarboxylase; Provisional Back     alignment and domain information
>TIGR01273 speA arginine decarboxylase, biosynthetic Back     alignment and domain information
>PLN02439 arginine decarboxylase Back     alignment and domain information
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism] Back     alignment and domain information
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase Back     alignment and domain information
>TIGR00492 alr alanine racemase Back     alignment and domain information
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase Back     alignment and domain information
>PRK00053 alr alanine racemase; Reviewed Back     alignment and domain information
>PRK13340 alanine racemase; Reviewed Back     alignment and domain information
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2 Back     alignment and domain information
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase Back     alignment and domain information
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1 Back     alignment and domain information
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases Back     alignment and domain information
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2 Back     alignment and domain information
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like Back     alignment and domain information
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins Back     alignment and domain information
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase Back     alignment and domain information
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX Back     alignment and domain information
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1 Back     alignment and domain information
>PRK03646 dadX alanine racemase; Reviewed Back     alignment and domain information
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional Back     alignment and domain information
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase Back     alignment and domain information
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins Back     alignment and domain information
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase Back     alignment and domain information
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3 Back     alignment and domain information
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine Back     alignment and domain information
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins Back     alignment and domain information
>TIGR00044 pyridoxal phosphate enzyme, YggS family Back     alignment and domain information
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins Back     alignment and domain information
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only] Back     alignment and domain information
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only] Back     alignment and domain information
>PF00842 Ala_racemase_C: Alanine racemase, C-terminal domain; InterPro: IPR011079 Alanine racemase (5 Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PRK06801 hypothetical protein; Provisional Back     alignment and domain information
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated Back     alignment and domain information
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query471
2p3e_A420 Crystal Structure Of Aq1208 From Aquifex Aeolicus L 2e-70
3n2b_A441 1.8 Angstrom Resolution Crystal Structure Of Diamin 6e-67
3vab_A443 Crystal Structure Of Diaminopimelate Decarboxylase 2e-64
1twi_A434 Crystal Structure Of Diaminopimelate Decarboxylase 4e-60
1tuf_A434 Crystal Structure Of Diaminopimelate Decarboxylase 2e-59
2qgh_A425 Crystal Structure Of Diaminopimelate Decarboxylase 9e-58
3c5q_A425 Crystal Structure Of Diaminopimelate Decarboxylase 2e-57
2yxx_A386 Crystal Structure Analysis Of Diaminopimelate Decar 4e-50
1knw_A425 Crystal Structure Of Diaminopimelate Decarboxylase 2e-34
1hkv_A453 Mycobacterium Diaminopimelate Dicarboxylase (Lysa) 7e-30
2o0t_A467 The Three Dimensional Structure Of Diaminopimelate 4e-29
1hkw_A453 Mycobacterium Diaminopimelate Dicarboxylase (Lysa) 1e-28
2j66_A428 Structural Characterisation Of Btrk Decarboxylase F 1e-28
4aib_A395 Crystal Structure Of Ornithine Decarboxylase From E 2e-18
1szr_C425 A Dimer Interface Mutant Of Ornithine Decarboxylase 3e-17
1qu4_A425 Crystal Structure Of Trypanosoma Brucei Ornithine D 4e-17
1njj_A425 Crystal Structure Determination Of T. Brucei Ornith 4e-17
2tod_A425 Ornithine Decarboxylase From Trypanosoma Brucei K69 1e-16
7odc_A424 Crystal Structure Ornithine Decarboxylase From Mous 3e-16
2oo0_A471 A Structural Insight Into The Inhibition Of Human A 1e-15
2on3_A461 A Structural Insight Into The Inhibition Of Human A 1e-15
2nva_A372 The X-Ray Crystal Structure Of The Paramecium Bursa 1e-15
2nv9_A372 The X-Ray Crystal Structure Of The Paramecium Bursa 4e-15
1d7k_A421 Crystal Structure Of Human Ornithine Decarboxylase 4e-15
3btn_A448 Crystal Structure Of Antizyme Inhibitor, An Ornithi 3e-12
3n2o_A 648 X-Ray Crystal Structure Of Arginine Decarboxylase C 1e-08
2plj_A419 Crystal Structure Of LysineORNITHINE DECARBOXYLASE 3e-07
3nzp_A 619 Crystal Structure Of The Biosynthetic Arginine Deca 1e-06
3nzq_A 666 Crystal Structure Of Biosynthetic Arginine Decarbox 3e-05
3mt1_A365 Crystal Structure Of Putative Carboxynorspermidine 3e-05
>pdb|2P3E|A Chain A, Crystal Structure Of Aq1208 From Aquifex Aeolicus Length = 420 Back     alignment and structure 
Iteration: 1

 Score =  263 bits (671), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 151/391 (38%), Positives = 237/391 (60%), Gaps = 8/391 (2%)
Query: 72  DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
           DG L+ E V ++++ +T    P Y+YS   I    EAY++A    +++I YA+KAN N  
Sbjct: 15  DGELFIEGVSLKELAQTF-GTPLYVYSSNFIKERFEAYRKAFP--DALICYAVKANFNPH 71
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAA-QEGVFVNVDS 190
           +++ L +LG GA +VSG EL LA +AG  P + ++ G GK  ++L  A   E +  NV+S
Sbjct: 72  LVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVES 131
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
             +L+ +   +   GKK  + +R+NPDVDP+ HPY+ATG + SKFG+   + Q   +   
Sbjct: 132 RQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYAS 191
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
              N L++VG HCH+GS I  +  +R+A   +V+  + +  +GF++ YL+IGGGLGI Y 
Sbjct: 192 KLEN-LEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYK 250
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
                 P P++L D +++L+ +    +I+EPGRS++ N   L+  V  +K  G+K+FI++
Sbjct: 251 PEDKE-PAPQDLADLLKDLLENVKAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIV 309
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
           D  M +LIRPS+Y+AY HI  V    +   ++  D+VGP+CE+ DFL  +RE+    RG 
Sbjct: 310 DAGMNDLIRPSIYNAYHHIIPVETKERKKVVA--DIVGPICETGDFLALDREIEEVQRGE 367
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
            L V  AGAY  +M+S YN++ R  E  V +
Sbjct: 368 YLAVLSAGAYGFAMSSHYNMRPRAAEVLVEN 398
>pdb|3N2B|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Diaminopimelate Decarboxylase (Lysa) From Vibrio Cholerae. Length = 441 Back     alignment and structure
>pdb|3VAB|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From Brucella Melitensis Bound To Plp Length = 443 Back     alignment and structure
>pdb|1TWI|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M. Jannaschii In Co-Complex With L-Lysine Length = 434 Back     alignment and structure
>pdb|1TUF|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M. Jannaschi Length = 434 Back     alignment and structure
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From Helicobacter Pylori Complexed With L-Lysine Length = 425 Back     alignment and structure
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l Mutant) From Helicobacter Pylori Complexed With L-Lysine Length = 425 Back     alignment and structure
>pdb|2YXX|A Chain A, Crystal Structure Analysis Of Diaminopimelate Decarboxylate (Lysa) Length = 386 Back     alignment and structure
>pdb|1KNW|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase Length = 425 Back     alignment and structure
>pdb|1HKV|A Chain A, Mycobacterium Diaminopimelate Dicarboxylase (Lysa) Length = 453 Back     alignment and structure
>pdb|2O0T|A Chain A, The Three Dimensional Structure Of Diaminopimelate Decarboxylase From Mycobacterium Tuberculosis Reveals A Tetrameric Enzyme Organisation Length = 467 Back     alignment and structure
>pdb|1HKW|A Chain A, Mycobacterium Diaminopimelate Dicarboxylase (Lysa) Length = 453 Back     alignment and structure
>pdb|2J66|A Chain A, Structural Characterisation Of Btrk Decarboxylase From Butirosin Biosynthesis Length = 428 Back     alignment and structure
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From Entamoeba Histolytica. Length = 395 Back     alignment and structure
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase Reveals Structure Of Gem Diamine Intermediate Length = 425 Back     alignment and structure
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine Decarboxylase Length = 425 Back     alignment and structure
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine Decarboxylase Bound To D-ornithine And To G418 Length = 425 Back     alignment and structure
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a Mutant In Complex With Alpha-Difluoromethylornithine Length = 425 Back     alignment and structure
>pdb|7ODC|A Chain A, Crystal Structure Ornithine Decarboxylase From Mouse, Truncated 37 Residues From The C-Terminus, To 1.6 Angstrom Resolution Length = 424 Back     alignment and structure
>pdb|2OO0|A Chain A, A Structural Insight Into The Inhibition Of Human And Leishmania Donovani Ornithine Decarboxylases By 3-Aminooxy-1-Aminopropane Length = 471 Back     alignment and structure
>pdb|2ON3|A Chain A, A Structural Insight Into The Inhibition Of Human And Leishmania Donovani Ornithine Decarboxylases By 3-Aminooxy- 1-Aminopropane Length = 461 Back     alignment and structure
>pdb|2NVA|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria Chlorella Virus Arginine Decarboxylase Bound To Agmatine Length = 372 Back     alignment and structure
>pdb|2NV9|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria Chlorella Virus Arginine Decarboxylase Length = 372 Back     alignment and structure
>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1 Angstroms Resolution Length = 421 Back     alignment and structure
>pdb|3BTN|A Chain A, Crystal Structure Of Antizyme Inhibitor, An Ornithine Decarboxylase Homologous Protein Length = 448 Back     alignment and structure
>pdb|3N2O|A Chain A, X-Ray Crystal Structure Of Arginine Decarboxylase Complexed With Arginine From Vibrio Vulnificus Length = 648 Back     alignment and structure
>pdb|2PLJ|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE COMPLEXED WITH Putrescine From Vibrio Vulnificus Length = 419 Back     alignment and structure
>pdb|3NZP|A Chain A, Crystal Structure Of The Biosynthetic Arginine Decarboxylase Spea From Campylobacter Jejuni, Northeast Structural Genomics Consortium Target Br53 Length = 619 Back     alignment and structure
>pdb|3NZQ|A Chain A, Crystal Structure Of Biosynthetic Arginine Decarboxylase Adc (Spea) From Escherichia Coli, Northeast Structural Genomics Consortium Target Er600 Length = 666 Back     alignment and structure
>pdb|3MT1|A Chain A, Crystal Structure Of Putative Carboxynorspermidine Decarboxylase Protein From Sinorhizobium Meliloti Length = 365 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query471
3vab_A443 Diaminopimelate decarboxylase 1; structural genomi 0.0
2qgh_A425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 0.0
3n2b_A441 Diaminopimelate decarboxylase; LYSA, lyase, struct 1e-180
2p3e_A420 Diaminopimelate decarboxylase; southeast collabora 1e-176
2yxx_A386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 1e-161
1twi_A434 Diaminopimelate decarboxylase; antibiotic resistan 1e-146
2j66_A428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 1e-135
1knw_A425 Diaminopimelate decarboxylase; pyridoxal-phosphate 1e-135
2o0t_A467 Diaminopimelate decarboxylase; PLP binding enzyme, 1e-132
3mt1_A365 Putative carboxynorspermidine decarboxylase prote; 1e-124
3n29_A418 Carboxynorspermidine decarboxylase; lyase; HET: PL 1e-109
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 2e-98
3btn_A448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 3e-98
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 2e-93
1f3t_A425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 2e-90
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 3e-90
2oo0_A471 ODC, ornithine decarboxylase; beta-alpha barrel, s 2e-89
3nzp_A 619 Arginine decarboxylase; alpha-beta protein, struct 4e-70
3nzq_A 666 ADC, biosynthetic arginine decarboxylase; alpha-be 5e-69
3n2o_A 648 ADC, biosynthetic arginine decarboxylase; lyase; H 3e-64
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Length = 443 Back     alignment and structure
 Score =  521 bits (1344), Expect = 0.0
 Identities = 140/390 (35%), Positives = 217/390 (55%), Gaps = 3/390 (0%)

Query: 72  DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
           +G L+ E+V + ++ + V   PFY+YS+  I R+   +  A   +++++ YA+KAN+N  
Sbjct: 30  NGVLHAENVSLPEIAKAVG-TPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQA 88

Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
           +L  L KLG GA  VS  E+R AL AG    + +F+G GK   ++  A + G++  NV+S
Sbjct: 89  VLTALAKLGAGADTVSQGEIRRALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVES 148

Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
           E +LE +   +  AGK   V LRINPDVD + H  ++TG   +KFGI  +K +       
Sbjct: 149 EPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYARAA 208

Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
           + P  L +VG   H+GS I  ++ F +A  LM   + +++A G  + ++++GGGLGI Y 
Sbjct: 209 SLPG-LNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPYR 267

Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
                 P P      V + +    L  + EPGR ++ N   LV  V  VK    KNF+++
Sbjct: 268 TPNTPPPPPVAYAQIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIV 327

Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
           D +M +LIRP+LYDA+  I  V     +A   + D VGPVCE+ D+LG +RE+  P  G 
Sbjct: 328 DAAMNDLIRPTLYDAFHDIRPVIMPNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGD 387

Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
            + +   GAY   ++STYN ++  PE    
Sbjct: 388 LIAICTTGAYGAVLSSTYNSRLLIPEVLGD 417
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Length = 425 Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Length = 441 Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Length = 420 Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Length = 386 Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Length = 434 Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Length = 428 Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Length = 425 Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Length = 467 Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Length = 365 Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Length = 418 Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Length = 419 Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Length = 448 Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Length = 372 Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Length = 425 Back     alignment and structure
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Length = 424 Back     alignment and structure
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Length = 471 Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Length = 619 Back     alignment and structure
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Length = 666 Back     alignment and structure
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Length = 648 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query471
3vab_A443 Diaminopimelate decarboxylase 1; structural genomi 100.0
3n2b_A441 Diaminopimelate decarboxylase; LYSA, lyase, struct 100.0
2o0t_A467 Diaminopimelate decarboxylase; PLP binding enzyme, 100.0
1twi_A434 Diaminopimelate decarboxylase; antibiotic resistan 100.0
2qgh_A425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 100.0
2j66_A428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 100.0
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 100.0
1knw_A425 Diaminopimelate decarboxylase; pyridoxal-phosphate 100.0
3n29_A418 Carboxynorspermidine decarboxylase; lyase; HET: PL 100.0
3mt1_A365 Putative carboxynorspermidine decarboxylase prote; 100.0
2p3e_A420 Diaminopimelate decarboxylase; southeast collabora 100.0
2yxx_A386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 100.0
2oo0_A471 ODC, ornithine decarboxylase; beta-alpha barrel, s 100.0
3btn_A448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 100.0
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 100.0
1f3t_A425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 100.0
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 100.0
3nzp_A619 Arginine decarboxylase; alpha-beta protein, struct 100.0
3nzq_A666 ADC, biosynthetic arginine decarboxylase; alpha-be 100.0
3n2o_A648 ADC, biosynthetic arginine decarboxylase; lyase; H 100.0
1xfc_A384 Alanine racemase; alpha-beta barrel, beta-structur 100.0
2vd8_A391 Alanine racemase; pyridoxal 5'-phosphate, peptidog 100.0
2dy3_A361 Alanine racemase; alpha/beta barrel, isomerase; HE 100.0
1vfs_A386 Alanine racemase; TIM-barrel, greek-KEY motief, is 100.0
1bd0_A388 Alanine racemase; isomerase, pyridoxal phosphate, 100.0
3co8_A380 Alanine racemase; protein structure initiative II, 100.0
1rcq_A357 Catabolic alanine racemase DADX; alpha-beta barrel 99.98
3anu_A376 D-serine dehydratase; PLP-dependent fold-type III 99.98
2rjg_A379 Alanine racemase; alpha/beta barrel, cell shape, c 99.97
4ecl_A374 Serine racemase, vantg; antibiotic resistance, van 99.97
3kw3_A376 Alanine racemase; niaid, ssgcid, seattle structura 99.96
3e5p_A371 Alanine racemase; ALR, PLP, SCP, isomerase, pyrido 99.95
4a3q_A382 Alanine racemase 1; isomerase, PLP-dependent enzym 99.95
3gwq_A426 D-serine deaminase; structural genomics, joint cen 99.95
3mub_A367 Alanine racemase; alpha/beta barrel, extended beta 99.94
3llx_A376 Predicted amino acid aldolase or racemase; structu 99.93
3hur_A395 Alanine racemase; structural genomics, isomerase, 99.92
3cpg_A282 Uncharacterized protein; unknown protein, TIM barr 99.88
3sy1_A245 UPF0001 protein YGGS; engineered protein, structur 99.79
1ct5_A256 Protein (yeast hypothetical protein, selenoMet); T 99.71
3r79_A244 Uncharacterized protein; PSI-biology, structural g 99.65
3vni_A294 Xylose isomerase domain protein TIM barrel; D-psic 83.72
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 80.83
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Back     alignment and structure
Probab=100.00  E-value=4e-81  Score=652.32  Aligned_cols=403  Identities=35%  Similarity=0.619  Sum_probs=371.3

Q ss_pred             ccceeeccCCeEEEcCcCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCce
Q 012098           64 EHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGA  143 (471)
Q Consensus        64 ~~~~~~~~~g~l~~~~i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~  143 (471)
                      .++|.+. +|+|+++|+++.+|++++ +||+|+||++.|++|+++|+++++..+++++|++|||+++.|++++.+.|+||
T Consensus        23 ~~~~~~~-~~~l~~~~~~l~~la~~~-~tP~~vid~~~l~~n~~~l~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~  100 (443)
T 3vab_A           23 VNHFEYR-NGVLHAENVSLPEIAKAV-GTPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQAVLTALAKLGAGA  100 (443)
T ss_dssp             CCSEEEE-TTEEEETTEEHHHHHHHH-CSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEE
T ss_pred             cccceee-CCEEEECCeeHHHHHhhc-CCCEEEEEHHHHHHHHHHHHHhhccCCcEEEEEeccCCCHHHHHHHHHcCCcE
Confidence            4577765 899999999999999998 99999999999999999999999875678999999999999999999999999


Q ss_pred             EEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCC
Q 012098          144 VLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQV  222 (471)
Q Consensus       144 ~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~  222 (471)
                      +|+|.+|++.++++|+++++|+|+||+|++++++.|++.|+. ++|||++|+++|.+.+++.+++++|+||||++.+...
T Consensus       101 dvaS~~E~~~~~~~G~~~~~I~~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~a~~~~~~~~V~lRVn~~~~~~~  180 (443)
T 3vab_A          101 DTVSQGEIRRALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVESEPELEILSARAVAAGKVAPVSLRINPDVDAKT  180 (443)
T ss_dssp             EESSHHHHHHHHHTTCCGGGEEEECTTCCHHHHHHHHHHTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEECCBCTTT
T ss_pred             EEeCHHHHHHHHHcCCChhhEEEcCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCC
Confidence            999999999999999999999999999999999999999986 9999999999999999999999999999999988889


Q ss_pred             CcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEec
Q 012098          223 HPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG  302 (471)
Q Consensus       223 ~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiG  302 (471)
                      |++++||...+|||++++++.++++.+++.+ ++++.|||||+|||+.+.+.++++++++.++++++++.|+++++||+|
T Consensus       181 ~~~i~tG~~~sRfGi~~~e~~~ll~~~~~~~-~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~~G~~l~~ldiG  259 (443)
T 3vab_A          181 HAKISTGKSENKFGIPRDKARAAYARAASLP-GLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVG  259 (443)
T ss_dssp             CCBC---CCCCSSSEEGGGHHHHHHHHHHST-TEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHTTCCCCEEECC
T ss_pred             CcccccCCCCCCCcCCHHHHHHHHHHHhhCC-CceEEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEeC
Confidence            9999999888999999999999999998887 899999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhh
Q 012098          303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSL  382 (471)
Q Consensus       303 GGl~i~y~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l  382 (471)
                      ||||++|...+...++++++++.|++.+.+++++|++|||||++++||+++++|+++|+.++++|+++|+||+++++|.+
T Consensus       260 GG~~i~y~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~vD~gm~~~~rp~l  339 (443)
T 3vab_A          260 GGLGIPYRTPNTPPPPPVAYAQIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIVDAAMNDLIRPTL  339 (443)
T ss_dssp             CCBCCCCCCC---CCCHHHHHHHHHHHHGGGCSEEEECCSHHHHGGGEEEEEEEEEEEECSSCEEEEESCCTTTCCHHHH
T ss_pred             CCcccCcCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEecCHHHhhcccEEEEEEEEEEecCCeeEEEEccccccccchHH
Confidence            99999997653245689999999999988888999999999999999999999999999888899999999999999999


Q ss_pred             hhcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEECC
Q 012098          383 YDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSL  462 (471)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~~  462 (471)
                      |++++++.++.....+.+..+++|+||+|+++|++.+++.||++++||+|+|.++|||+++|+++||++|+|++|+++++
T Consensus       340 y~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fN~~~~p~~v~v~~~  419 (443)
T 3vab_A          340 YDAFHDIRPVIMPNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGDLIAICTTGAYGAVLSSTYNSRLLIPEVLGDGE  419 (443)
T ss_dssp             HCCCCCEEESBCCCTTSCEEEEEEECSSSSTTCEEEEEEEEECCCTTCEEEEESCTTTTGGGCCCGGGCCCCCEEEEETT
T ss_pred             hCccceeEEcccCCCCCCceEEEEEccCCCCCCEEeeccCcCCCCCCCEEEEeCCCcCchhhhccccCCCCCcEEEEECC
Confidence            99988766654322234567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEec
Q 012098          463 ISIIILP  469 (471)
Q Consensus       463 ~~~~~~~  469 (471)
                      ++++||+
T Consensus       420 ~~~~ir~  426 (443)
T 3vab_A          420 RYHVVRP  426 (443)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEe
Confidence            9999986
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Back     alignment and structure
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Back     alignment and structure
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Back     alignment and structure
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Back     alignment and structure
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Back     alignment and structure
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A* Back     alignment and structure
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} Back     alignment and structure
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A* Back     alignment and structure
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A Back     alignment and structure
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni} Back     alignment and structure
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A* Back     alignment and structure
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A* Back     alignment and structure
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* Back     alignment and structure
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae} Back     alignment and structure
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A* Back     alignment and structure
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A Back     alignment and structure
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400} Back     alignment and structure
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} Back     alignment and structure
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} Back     alignment and structure
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Back     alignment and structure
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A* Back     alignment and structure
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Back     alignment and structure
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens} Back     alignment and structure
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A* Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 471
d1twia2264 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase L 3e-33
d1knwa1174 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarb 3e-32
d1hkva2265 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase L 2e-30
d1hkva1181 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarb 2e-28
d7odca2240 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxyl 1e-27
d1twia1170 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decar 3e-27
d1f3ta1169 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine 9e-27
d1knwa2247 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase L 3e-26
d1f3ta2240 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxyl 2e-25
d7odca1177 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine d 6e-22
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 264 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Diaminopimelate decarboxylase LysA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  124 bits (311), Expect = 3e-33
 Identities = 95/264 (35%), Positives = 145/264 (54%), Gaps = 14/264 (5%)

Query: 98  SKPQITRNVEAYKQALE------GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNEL 151
           S+ QI  N   Y +A +      G   I+ YA KAN N  I   L KLGCGA +VSG EL
Sbjct: 1   SEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRLLAKLGCGADVVSGGEL 60

Query: 152 RLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNV 210
            +A  +     K +FNGN K  E++++  +  +   NVDS  +L  I   ++  G+  NV
Sbjct: 61  YIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANV 120

Query: 211 LLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNEL-KLVGAHCHLGSTI 269
             RINP+V+P+ HP ++TG K +KFG+  E          A   E   +VG HCH+GS +
Sbjct: 121 AFRINPNVNPKTHPKISTGLKKNKFGLDVESGIAMKAIKMALEMEYVNVVGVHCHIGSQL 180

Query: 270 TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVREL 329
           T +  F +    +++++ +++ +G E++ +N+GGGLGI YY    + P  ++L D +   
Sbjct: 181 TDISPFIEETRKVMDFVVELKEEGIEIEDVNLGGGLGIPYYKDKQI-PTQKDLADAIINT 239

Query: 330 VLS-----RNLNLIIEPGRSLIAN 348
           +L         NLI+EPGRSL+A 
Sbjct: 240 MLKYKDKVEMPNLILEPGRSLVAT 263
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Length = 174 Back     information, alignment and structure
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 265 Back     information, alignment and structure
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181 Back     information, alignment and structure
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Length = 240 Back     information, alignment and structure
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 170 Back     information, alignment and structure
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]} Length = 169 Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Length = 247 Back     information, alignment and structure
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Length = 240 Back     information, alignment and structure
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 177 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query471
d1hkva2265 Diaminopimelate decarboxylase LysA {Mycobacterium 100.0
d1twia2264 Diaminopimelate decarboxylase LysA {Archaeon Metha 100.0
d1f3ta2240 Eukaryotic ornithine decarboxylase {Trypanosoma br 100.0
d7odca2240 Eukaryotic ornithine decarboxylase {Mouse (Mus mus 100.0
d1knwa2247 Diaminopimelate decarboxylase LysA {Escherichia co 100.0
d1hkva1181 Diaminopimelate decarboxylase LysA {Mycobacterium 99.97
d1twia1170 Diaminopimelate decarboxylase LysA {Archaeon Metha 99.96
d1knwa1174 Diaminopimelate decarboxylase LysA {Escherichia co 99.95
d1f3ta1169 Eukaryotic ornithine decarboxylase (ODC) {Trypanos 99.92
d7odca1177 Eukaryotic ornithine decarboxylase (ODC) {Mouse (M 99.88
d1vfsa2237 Alanine racemase {Streptomyces lavendulae [TaxId: 99.84
d1bd0a2233 Alanine racemase {Bacillus stearothermophilus [Tax 99.73
d1rcqa2226 Alanine racemase {Pseudomonas aeruginosa [TaxId: 2 99.69
d1ct5a_244 "Hypothetical" protein ybl036c {Baker's yeast (Sac 98.9
d1rcqa1131 Alanine racemase {Pseudomonas aeruginosa [TaxId: 2 97.23
d1vfsa1145 Alanine racemase {Streptomyces lavendulae [TaxId: 97.2
d1bd0a1148 Alanine racemase {Bacillus stearothermophilus [Tax 97.11
d1i60a_278 Hypothetical protein IolI {Bacillus subtilis [TaxI 84.97
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Diaminopimelate decarboxylase LysA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.2e-47  Score=372.12  Aligned_cols=248  Identities=27%  Similarity=0.439  Sum_probs=218.3

Q ss_pred             eHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHH
Q 012098           98 SKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLV  177 (471)
Q Consensus        98 d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~  177 (471)
                      |++.|++|+++|+++|+. +++++||+|||+++.|++++.++|+|+||+|.+|++.|+++|+++++|+|+||+|+.++|+
T Consensus         1 D~~~lr~~~~~~~~af~~-~~~i~YA~KaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~Ii~~gp~K~~~~l~   79 (265)
T d1hkva2           1 DEDDFRSRCRETAAAFGS-GANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVSELT   79 (265)
T ss_dssp             EHHHHHHHHHHHHHHTTS-GGGBEEEGGGSCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCC-CCeEEEEeccCCCHHHHHHHHHcCCCeEEeChhhHHHHHHcCCCHHHheeccccchhhhHH
Confidence            789999999999999985 5789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCC-EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHH--HHHHHHcCCC
Q 012098          178 LAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW--FLDAVKAHPN  254 (471)
Q Consensus       178 ~a~~~gv-~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~--~l~~l~~~~~  254 (471)
                      .|+++|+ .+++||++||+++.+++.+.++..+|++|+||+.....++++.+|+..+|||++.++...  .+..+...+ 
T Consensus        80 ~Al~~gv~~i~vDs~~El~~i~~~~~~~~~~~~v~lr~~p~~~~~~~~~~~~g~~~skFG~~~~~~~~~~~~~~~~~~~-  158 (265)
T d1hkva2          80 AAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATD-  158 (265)
T ss_dssp             HHHHHTCCCEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSEEEEETEEEECSSCCSSSSEESTTSHHHHHHHHHHHCS-
T ss_pred             HHHhcCcccccccchHHHHHHHHHhhhccccccccccccceeccccccceeccccccccccchhhhHHHHHHHHHHhhc-
Confidence            9999998 599999999999999998889999999999999888888999999999999999876432  234445555 


Q ss_pred             CceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHH-----HHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHH
Q 012098          255 ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKI-----RAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVREL  329 (471)
Q Consensus       255 ~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l-----~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~  329 (471)
                      +++++|+|||+|||+.+++.|.++++++.+++.++     ++.|+++++||||||||++|..++. .++++++++.+.+.
T Consensus       159 ~l~~~GlH~HvGSq~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~l~~ldiGGG~~v~y~~~~~-~~~~~~~~~~i~~~  237 (265)
T d1hkva2         159 HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDD-PPPIAELAAKLGTI  237 (265)
T ss_dssp             SEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCEEECCCCBCCCSSTTCC-CCCHHHHHHHHHHH
T ss_pred             CceeeeeeeeecccccchHHHHHHHHHHHHHHHhHHHHHHHhcCCCcceeeecCCCCccCCCCCC-CCCHHHHHHHHHHH
Confidence            89999999999999999999999998888887766     3458999999999999999976543 45777777766555


Q ss_pred             H----hcC---CcEEEEcccceeecc
Q 012098          330 V----LSR---NLNLIIEPGRSLIAN  348 (471)
Q Consensus       330 ~----~~~---~~~l~~EpGR~lva~  348 (471)
                      +    ..+   +++|++|||||+|++
T Consensus       238 ~~~~~~~~~~~~~~l~~EPGR~lvg~  263 (265)
T d1hkva2         238 VSDESTAVGLPTPKLVVEPGRAIAGP  263 (265)
T ss_dssp             HHHHHHTTTCCCCEEEBCCSHHHHST
T ss_pred             HHHHHHhcCCCCCEEEEeCchhhhcC
Confidence            4    333   468999999999996
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Back     information, alignment and structure
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rcqa1 b.49.2.2 (A:1-7,A:234-357) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1vfsa1 b.49.2.2 (A:4-12,A:250-385) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Back     information, alignment and structure
>d1bd0a1 b.49.2.2 (A:2-11,A:245-382) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure