Citrus Sinensis ID: 012245

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------
MEMNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRNIACGWWHTLLLAETTQI
cccccccccccEEEEEcccccEEEEccccccccccccccEEEEEEEEcccccEEEEEccccEEEEEEccccEEEEccccccccccccccccccEEEEEcccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEcccEEEEEccccccccccccccEEEEEEEEccccccEEEEEEcccEEEEEEccccEEEEEcccccccccccccccccccEEEccccccccccccccEEEccccccccccccccEEEEEEccccEEEEEccccEEEEEcccccccccccccccccEEEccccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccEEEEEccccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccccEEEEEccccEEEEEEcccEEEEEEccccc
cEEEEEccccccEEEEEcccEEEEEEccccccccccccccccccHHHHHccccEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccHHHHccccEEEEEEcccEEEEEEcccEEEEEEcccccccccccccccccccccccEHHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEHHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccHHHHHcccccccccccccccccccccccccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEccccEEEEEccccccccccccccccccEEEccHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEEEcccEEEEEEEcccEEEEEEccccc
memngskreenekmeECKETVVYMWgylpgtspekspilspiparlcggdswkdvcgggcgfalatsesgklitwgsaddegqsyltsgkhgetpepfplpteaSVVKAAAGWAHCVSVTeagevytwgwrecvpsakvtrdfgsagsfqkdstgkqsalpteqappsdkrageEVVKrrktssareesenpasgdefftlspclvtlnpgvkitkvaaggRHTLILSDmgqvwgwgyggegqlglgsrikmvptphlipclehaasgkdrpllvrqgsvnssgkagRSYVKEIACggrhsavvtDAGALltfgwglygqcghgstndqlrpsyaSSLMDIQVEQIAAGLWHTVCISVegrvyvfggnqfgqlgtgvdqaenvpklletpileskrakvvscgarhsavltedgqvlswgwnkygqlglgdsidrnipslvpihgflprniacgWWHTLLLAETTQI
memngskreenekmeECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGsfqkdstgkqsalpteqappsdkrageevvkrrktssareesenpasgdefftlsPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGsvnssgkagRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLetpileskraKVVSCGARHSavltedgqvlsWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRNIACGWWHTLLLAETTQI
MEMNGSkreenekmeeckeTVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMgqvwgwgyggegqlglgSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRNIACGWWHTLLLAETTQI
*****************KETVVYMWGYLPGT*****PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWG***************************ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVT*********************************************************FFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAA*********************RSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRNIACGWWHTLLLA*****
**********NEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRD****************ALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRNIACGWWHTLLLAETTQI
***************ECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGS*************************************************GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQG*********RSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRNIACGWWHTLLLAETTQI
MEMNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGK*****VRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRNIACGWWHTLLLAET***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEMNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRNIACGWWHTLLLAETTQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query467 2.2.26 [Sep-21-2011]
Q9FN03440 Ultraviolet-B receptor UV no no 0.730 0.775 0.313 3e-40
O95714 4834 E3 ubiquitin-protein liga yes no 0.524 0.050 0.329 1e-25
Q4U2R1 4836 E3 ubiquitin-protein liga yes no 0.522 0.050 0.327 4e-25
Q9VR91 4912 Probable E3 ubiquitin-pro no no 0.486 0.046 0.314 5e-25
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.503 0.222 0.312 1e-24
Q9UII4 1024 E3 ISG15--protein ligase no no 0.449 0.205 0.340 5e-24
Q99LJ7 551 RCC1 and BTB domain-conta no no 0.475 0.402 0.341 7e-24
Q6P798 551 RCC1 and BTB domain-conta no no 0.475 0.402 0.341 8e-24
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.503 0.222 0.305 1e-23
Q9N1T2 1003 X-linked retinitis pigmen no no 0.537 0.250 0.323 1e-23
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  166 bits (421), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 126/402 (31%), Positives = 191/402 (47%), Gaps = 61/402 (15%)

Query: 55  VCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS------VVK 108
           +   G   ++A      + +WG  +D GQ       HG+  E  P PT+ S      +V 
Sbjct: 19  IISAGASHSVALLSGDIVCSWGRGED-GQL-----GHGDA-EDRPSPTQLSALDGHQIVS 71

Query: 109 AAAGWAHCVSVTEAG-EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE---- 163
              G  H V+ +++G EVY+WGW           DFG  G    +S+   + LP +    
Sbjct: 72  VTCGADHTVAYSQSGMEVYSWGWG----------DFGRLG--HGNSSDLFTPLPIKALHG 119

Query: 164 ----QAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAA 219
               Q    D       ++    S  R ++     GD   +L P  +    G++I  VAA
Sbjct: 120 IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA 179

Query: 220 GGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGS 279
           G  HT  +++ G ++GWG+G  G LGLG R     T  L+P                   
Sbjct: 180 GAEHTAAVTEDGDLYGWGWGRYGNLGLGDR-----TDRLVP-----------------ER 217

Query: 280 VNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLM 339
           V S+G    S V   ACG RH+  V+ +GAL T+GW  YGQ GHG   D L P    +L 
Sbjct: 218 VTSTGGEKMSMV---ACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS 274

Query: 340 DIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKV 399
           +  + QI+ G  HT+ ++ +G++Y +G N+FGQ+G G +  +  P  +  P  + ++   
Sbjct: 275 NSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP--DDQKVVQ 332

Query: 400 VSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLV 441
           VSCG RH+  +TE   V +WG    GQLG+G+S+DRN P ++
Sbjct: 333 VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKII 374
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2 Back     alignment and function description
>sp|Q99LJ7|RCBT2_MOUSE RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|Q6P798|RCBT2_RAT RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q9N1T2|RPGR_CANFA X-linked retinitis pigmentosa GTPase regulator OS=Canis familiaris GN=RPGR PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query467
255586057478 Ran GTPase binding protein, putative [Ri 0.970 0.947 0.694 0.0
449448608485 PREDICTED: probable E3 ubiquitin-protein 0.991 0.954 0.662 0.0
449519078472 PREDICTED: probable E3 ubiquitin-protein 0.963 0.953 0.676 0.0
224138854467 predicted protein [Populus trichocarpa] 0.959 0.959 0.679 1e-180
359482088514 PREDICTED: probable E3 ubiquitin-protein 0.985 0.894 0.661 1e-177
225449388484 PREDICTED: X-linked retinitis pigmentosa 0.987 0.952 0.639 1e-177
255566472476 Serine/threonine-protein kinase Nek8, pu 0.985 0.966 0.647 1e-177
356566559525 PREDICTED: probable E3 ubiquitin-protein 0.948 0.843 0.658 1e-176
356523185528 PREDICTED: LOW QUALITY PROTEIN: probable 0.952 0.842 0.653 1e-176
356539897480 PREDICTED: probable E3 ubiquitin-protein 0.987 0.960 0.635 1e-174
>gi|255586057|ref|XP_002533695.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223526406|gb|EEF28690.1| Ran GTPase binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/487 (69%), Positives = 377/487 (77%), Gaps = 34/487 (6%)

Query: 1   MEMNGSKREENEKMEEC-KETVVYMWGYLPGTSPEKSPILSPIPARLCGG---DSWKDVC 56
           M +NG+  EE+ KMEEC K T VYM GYLPG SPEKSPILSPI   +  G   DSWKDVC
Sbjct: 1   MAINGNGEEEDVKMEECCKVTAVYMCGYLPGISPEKSPILSPIQVPISDGGGFDSWKDVC 60

Query: 57  GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC 116
            GGCGFA+A S SG LITWGS D+EGQSYLTSGKHGE PEPFPLP EASVVKAAAGWAHC
Sbjct: 61  SGGCGFAMAISGSGNLITWGSTDEEGQSYLTSGKHGEIPEPFPLPCEASVVKAAAGWAHC 120

Query: 117 VSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPS-------- 168
           VSVTE GEV+TWGW+ECVPS K+          Q+D+TGKQ+AL   +   S        
Sbjct: 121 VSVTETGEVFTWGWKECVPSVKI---------IQRDNTGKQNALLQTEKVSSRSEGSSLT 171

Query: 169 --------DKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAG 220
                    KR G+E+VKRR+ S  +E+ E+  SGDEFFT+ P +VTL PGV+IT VAAG
Sbjct: 172 RGTVLNSDSKRTGDEIVKRRRVSPTKEDFESSPSGDEFFTVLPLMVTLAPGVRITNVAAG 231

Query: 221 GRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSV 280
           GRHTL LSDMGQVWGWGYGGEGQLGLGSRIKMV +PHLIPC++ +ASGKDR L+V QG++
Sbjct: 232 GRHTLALSDMGQVWGWGYGGEGQLGLGSRIKMVSSPHLIPCIDASASGKDRSLIVHQGNL 291

Query: 281 NSSGKAGR---SYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASS 337
             S +A     SYVKEIACGGRHSA+VTD GALLTFGWGLYGQCG G+TNDQLRP+   +
Sbjct: 292 TPSAQASTFPGSYVKEIACGGRHSAIVTDTGALLTFGWGLYGQCGQGTTNDQLRPACVPA 351

Query: 338 LMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRA 397
           L  I+V  IAAGLWHTVCIS +G VY FGGNQFGQLGT  DQ E  PK L  P L SK A
Sbjct: 352 LSGIKVISIAAGLWHTVCISADGHVYTFGGNQFGQLGTDTDQTE--PKQLYAPSLGSKHA 409

Query: 398 KVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPIHGFLPRNIACGWWH 457
           K+VSCGARHSAVLTEDGQV SWGWNKYGQLGLGDSIDRNIPS VPI G+ P+NIACGWWH
Sbjct: 410 KIVSCGARHSAVLTEDGQVYSWGWNKYGQLGLGDSIDRNIPSQVPIEGYRPKNIACGWWH 469

Query: 458 TLLLAET 464
           TLLLAET
Sbjct: 470 TLLLAET 476

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449448608|ref|XP_004142058.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449519078|ref|XP_004166562.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224138854|ref|XP_002322918.1| predicted protein [Populus trichocarpa] gi|222867548|gb|EEF04679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359482088|ref|XP_002271900.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225449388|ref|XP_002282470.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Vitis vinifera] Back     alignment and taxonomy information
>gi|255566472|ref|XP_002524221.1| Serine/threonine-protein kinase Nek8, putative [Ricinus communis] gi|223536498|gb|EEF38145.1| Serine/threonine-protein kinase Nek8, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356566559|ref|XP_003551498.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|356523185|ref|XP_003530222.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC3-like [Glycine max] Back     alignment and taxonomy information
>gi|356539897|ref|XP_003538429.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query467
TAIR|locus:2099986488 AT3G55580 [Arabidopsis thalian 0.948 0.907 0.569 2.6e-141
TAIR|locus:2163986 440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.357 0.379 0.385 1.5e-33
ZFIN|ZDB-GENE-070718-6 4832 herc2 "hect domain and RLD 2" 0.374 0.036 0.355 2.3e-28
UNIPROTKB|F1S098 4859 HERC1 "Uncharacterized protein 0.374 0.036 0.368 1.5e-27
UNIPROTKB|E2QYQ5 4863 HERC1 "Uncharacterized protein 0.374 0.035 0.368 1.5e-27
MGI|MGI:2444156377 Rccd1 "RCC1 domain containing 0.177 0.220 0.361 1.6e-27
UNIPROTKB|F1MNS0 4857 HERC1 "Uncharacterized protein 0.374 0.036 0.368 1.9e-27
TAIR|locus:2146142396 AT5G16040 "AT5G16040" [Arabido 0.338 0.398 0.341 3e-27
UNIPROTKB|Q15751 4861 HERC1 "Probable E3 ubiquitin-p 0.374 0.036 0.363 4.1e-27
UNIPROTKB|E1C4H7 4863 HERC1 "Uncharacterized protein 0.374 0.035 0.386 1.1e-26
TAIR|locus:2099986 AT3G55580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1382 (491.5 bits), Expect = 2.6e-141, P = 2.6e-141
 Identities = 261/458 (56%), Positives = 322/458 (70%)

Query:    21 VVYMWGYLPGTSPEKSPILSPIPARLCGG--DSWKDVCGGGCGFALATSESGKLITWGSA 78
             VVYMWGYLPG SP++SP++SP+  ++      SWKDV GGGCGFA+AT+ESGKLITWGS 
Sbjct:    32 VVYMWGYLPGASPQRSPLMSPVEVKIPPAVESSWKDVSGGGCGFAMATAESGKLITWGST 91

Query:    79 DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAK 138
             DD GQSY+TSGKHGETPEPFPLP E  V KA AGWAHCV+VTE  +VYTWGWREC+P+ +
Sbjct:    92 DDLGQSYVTSGKHGETPEPFPLPPEVCVQKAEAGWAHCVAVTENQQVYTWGWRECIPTGR 151

Query:   139 V---------TRDFG-SAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREE 188
             V          R+   S       S GK+S+  T      + R G E  K+R+ S +++ 
Sbjct:   152 VFGQVDGDSCERNISFSTEQVSSSSQGKKSSGGTSSQV--EGRGGGEPTKKRRISPSKQA 209

Query:   189 SENPASGDEF-FTLSPCLVTLNPGVKITKVAAGGRHTLILSDMXXXXXXXXXXXXXXXXX 247
             +EN +  D    +  PCLV+L PGV+I  VAAGGRHTL LSD+                 
Sbjct:   210 AENSSQSDNIDLSALPCLVSLAPGVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLG 269

Query:   248 SRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDA 307
             SR+++V +PH IPC+E ++ GK     V   SV   G+   SYVK+IACGGRHSAV+TD 
Sbjct:   270 SRVRLVSSPHPIPCIEPSSYGKATSSGVNMSSVVQCGRVLGSYVKKIACGGRHSAVITDT 329

Query:   308 GALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGG 367
             GALLTFGWGLYGQCG GST+D+L P+  SSL+ I++E++AAGLWHT C S +G VY FGG
Sbjct:   330 GALLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEEVAAGLWHTTCASSDGDVYAFGG 389

Query:   368 NQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQL 427
             NQFGQLGTG DQAE +PKLLE P LE+   K +SCGARH+AV+T++G+V  WGWNKYGQL
Sbjct:   390 NQFGQLGTGCDQAETLPKLLEAPNLENVNVKTISCGARHTAVITDEGRVFCWGWNKYGQL 449

Query:   428 GLGDSIDRNIPSLVPIHGFLPRNIACGWWHTLLLAETT 465
             G+GD IDRN P+ V I    P+NIACGWWHTLLL + T
Sbjct:   450 GIGDVIDRNAPAEVRIKDCFPKNIACGWWHTLLLGQPT 487
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070718-6 herc2 "hect domain and RLD 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1S098 HERC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYQ5 HERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2444156 Rccd1 "RCC1 domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNS0 HERC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
TAIR|locus:2146142 AT5G16040 "AT5G16040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q15751 HERC1 "Probable E3 ubiquitin-protein ligase HERC1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4H7 HERC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query467
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-34
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-30
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 7e-21
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-12
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 9e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-11
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-10
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-10
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-07
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 7e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 6e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 3e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 2e-04
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 7e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 0.002
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.003
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  134 bits (340), Expect = 1e-34
 Identities = 101/413 (24%), Positives = 150/413 (36%), Gaps = 109/413 (26%)

Query: 56  CGGGCGFALATSESGKLITWGSADDEGQSYLTSGK---------------HGETPEPFPL 100
           CGG    +L     G L +WG  DD                            TP   P 
Sbjct: 111 CGGN--HSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPG 168

Query: 101 PTEAS----VVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGK 156
            + A     VVK A GW   V +T  G VY+WG                           
Sbjct: 169 GSSAKSHLRVVKLACGWEISVILTADGRVYSWG--------------------------- 201

Query: 157 QSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITK 216
                         R GE      K S        P                 P   I +
Sbjct: 202 ------------TFRCGELGQGSYKNSQKTSIQFTP--------------LKVPKKAIVQ 235

Query: 217 VAAGGRHTLILSDMGQVWGWGYGGEGQLGLG--SRIKMVPTPHLIPCLEHAASGKDRPLL 274
           +AAG  H + L++ G+V+GWG   +GQLG     R+K+V    L+       +       
Sbjct: 236 LAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVV---LVGDPFAIRN------- 285

Query: 275 VRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTN----DQL 330
                           +K +ACG  HS  + + G +  +G  ++GQ G GS         
Sbjct: 286 ----------------IKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTT 329

Query: 331 RPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETP 390
           +P+Y   L  + +  I+AG  H++ +  +G +Y FG    GQLG   +   +V     T 
Sbjct: 330 KPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVS--TPTK 387

Query: 391 ILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDR-NIPSLVP 442
           +  + + + V+CG  H+   T+DG V SWGW ++G LG G       +P+L+ 
Sbjct: 388 LSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIR 440

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 467
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.96
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.91
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.9
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.32
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.24
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.22
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.19
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.08
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.06
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 96.16
KOG3669 705 consensus Uncharacterized conserved protein, conta 94.31
KOG3669 705 consensus Uncharacterized conserved protein, conta 92.03
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 90.02
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 88.98
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 88.53
KOG0315311 consensus G-protein beta subunit-like protein (con 86.05
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-52  Score=392.93  Aligned_cols=367  Identities=28%  Similarity=0.474  Sum_probs=283.4

Q ss_pred             hceeeeeEEEEeecC-CCCCCCC---CCCccceecccC--CCCCceeeecCCcceeEEEecCCcEEEecCCCCCCCcccc
Q 012245           14 MEECKETVVYMWGYL-PGTSPEK---SPILSPIPARLC--GGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLT   87 (467)
Q Consensus        14 ~~~~~~~~v~~WG~~-~~~~~~~---~~~~~p~~~~~~--~~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~   87 (467)
                      ........||+||+| +.+++.+   +....|+..+..  +...|++++|||. |+++|++||+||+||.|. .|+||..
T Consensus        62 ~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~-hsl~ld~Dg~lyswG~N~-~G~Lgr~  139 (476)
T COG5184          62 HLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGN-HSLGLDHDGNLYSWGDND-DGALGRD  139 (476)
T ss_pred             hhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCc-eEEeecCCCCEEEeccCc-ccccccc
Confidence            367788999999999 6666654   334667766655  4689999999987 999999999999999998 7999865


Q ss_pred             CC--------------C--CcCcccccCC----CCCCCeeEEecCccEEEEEecCCcEEEeeCCCCcCCCccccccCCCC
Q 012245           88 SG--------------K--HGETPEPFPL----PTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAG  147 (467)
Q Consensus        88 ~~--------------~--~~~~p~~v~~----~~~~~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~~~~~~~~~~  147 (467)
                      ..              .  ...+|..++.    ....+|++++||++++++|+++|+||+||.+..+.++..        
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g--------  211 (476)
T COG5184         140 IHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQG--------  211 (476)
T ss_pred             cccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccc--------
Confidence            51              1  2345555554    113479999999999999999999999998665422211        


Q ss_pred             ccccCcCCCCCCCCCCCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeCCCeeEEE
Q 012245          148 SFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLIL  227 (467)
Q Consensus       148 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~al  227 (467)
                         ..+.                                       .-+..++..|..+.   ...|+++++|.+|.++|
T Consensus       212 ---~~~~---------------------------------------s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~l  246 (476)
T COG5184         212 ---SYKN---------------------------------------SQKTSIQFTPLKVP---KKAIVQLAAGADHLIAL  246 (476)
T ss_pred             ---cccc---------------------------------------cccceeeeeeeecC---chheeeeccCCceEEEE
Confidence               0000                                       01112334454443   44899999999999999


Q ss_pred             ecCCcEEEEEcCCCcccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecCceEEEEecC
Q 012245          228 SDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDA  307 (467)
Q Consensus       228 t~~G~vy~wG~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~  307 (467)
                      +++|+||+||+|.+||||.... +....+..++.+-..                       ..|+.|+||.+|++||+++
T Consensus       247 t~~G~vy~~Gs~qkgqlG~~~~-e~~~~~~lv~~~f~i-----------------------~~i~~vacG~~h~~al~~~  302 (476)
T COG5184         247 TNEGKVYGWGSNQKGQLGRPTS-ERLKLVVLVGDPFAI-----------------------RNIKYVACGKDHSLALDED  302 (476)
T ss_pred             ecCCcEEEecCCcccccCCchh-hhcccccccCChhhh-----------------------hhhhhcccCcceEEEEcCC
Confidence            9999999999999999999765 222333333322211                       3478999999999999999


Q ss_pred             CcEEEEeeCCCCcccCCCCC----CccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCC--C
Q 012245          308 GALLTFGWGLYGQCGHGSTN----DQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQA--E  381 (467)
Q Consensus       308 g~v~~wG~n~~gqlG~~~~~----~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~--~  381 (467)
                      |+||+||.|.+||||.+...    ....|.....+.++.|..+++|..|+++|..+|.||+||+++++|||..+...  .
T Consensus       303 G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~  382 (476)
T COG5184         303 GEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDV  382 (476)
T ss_pred             CeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeec
Confidence            99999999999999998221    23456667777777899999999999999999999999999999999998444  3


Q ss_pred             ccceeeecCccCCCceEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCC-cccceEee---cCCCceEEEEecCCe
Q 012245          382 NVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSID-RNIPSLVP---IHGFLPRNIACGWWH  457 (467)
Q Consensus       382 ~~p~~v~~~~~~~~~i~~i~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~-~~~p~~v~---~~~~~v~~v~~G~~h  457 (467)
                      ..|.++.    ...++.+|+||..|.++.+.+|.||.||++++|+||.|+... ...|+.+.   ++...++...||.+.
T Consensus       383 ~~~~~ls----~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~  458 (476)
T COG5184         383 STPTKLS----VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQF  458 (476)
T ss_pred             CCccccc----cccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCCceEEeccCcce
Confidence            3444332    235799999999999999999999999999999999987654 55688777   567789999999988


Q ss_pred             EEEEEc
Q 012245          458 TLLLAE  463 (467)
Q Consensus       458 s~~l~~  463 (467)
                      ++....
T Consensus       459 ~v~~~~  464 (476)
T COG5184         459 SVIEET  464 (476)
T ss_pred             EEEecc
Confidence            887654

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query467
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 3e-33
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 4e-29
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 6e-04
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 6e-33
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 3e-29
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 5e-04
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 7e-33
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 5e-29
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 7e-04
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 3e-32
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 1e-28
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 6e-04
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 2e-16
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 4e-15
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 6e-14
1a12_A 413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 3e-13
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 7e-14
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 4e-13
3of7_A 473 The Crystal Structure Of Prp20p From Saccharomyces 2e-10
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 2e-10
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure 
Iteration: 1

 Score =  139 bits (351), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/389 (30%), Positives = 178/389 (45%), Gaps = 62/389 (15%)
Query: 69  SGKLI-TWGSADDEGQSYLTSGKHGETPEPFPLPTEAS------VVKAAAGWAHCVSVTE 121
           SG ++ +WG  +D GQ       HG+  E  P PT+ S      +V    G  H V+ ++
Sbjct: 21  SGDIVCSWGRGED-GQL-----GHGDA-EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQ 73
Query: 122 AG-EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE--------QAPPSDKRA 172
           +G EVY+WGW           DFG  G    +S+   + LP +        Q    D   
Sbjct: 74  SGMEVYSWGWG----------DFGRLG--HGNSSDLFTPLPIKALHGIRIKQIACGDSHC 121
Query: 173 GEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMXX 232
               ++    S  R ++     GD   +L P  +    G++I  VAAG  HT  +++   
Sbjct: 122 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 233 XXXXXXXXXXXXXXXSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVK 292
                           R     T  L+P         +R        V S+G    S V 
Sbjct: 182 LYGWGWGRYGNLGLGDR-----TDRLVP---------ER--------VTSTGGEKMSMV- 218
Query: 293 EIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYASSLMDIQVEQIAAGLWH 352
             ACG RH+  V+ +GAL T+GW  YGQ GHG   D L P    +L +  + QI+ G  H
Sbjct: 219 --ACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRH 276
Query: 353 TVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTE 412
           T+ ++ +G++Y +G N+FGQ+G G +  +  P  +  P  + ++   VSCG RH+  +TE
Sbjct: 277 TMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP--DDQKVVQVSCGWRHTLAVTE 334
Query: 413 DGQVLSWGWNKYGQLGLGDSIDRNIPSLV 441
              V +WG    GQLG+G+S+DRN P ++
Sbjct: 335 RNNVFAWGRGTNGQLGIGESVDRNFPKII 363
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query467
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-80
3of7_A473 Regulator of chromosome condensation; beta-propell 7e-26
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-75
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-75
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-70
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-52
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-11
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-10
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-08
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-07
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-06
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-74
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-72
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-64
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-52
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 7e-35
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-10
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-10
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 9e-10
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-09
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-07
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-73
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 8e-73
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-64
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 6e-08
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-68
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-65
3mvd_K423 Regulator of chromosome condensation; protein-DNA 9e-64
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 7e-17
3mvd_K423 Regulator of chromosome condensation; protein-DNA 7e-11
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-10
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-07
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-36
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-34
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 5e-31
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-21
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-04
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 7e-04
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 9e-04
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
 Score =  256 bits (656), Expect = 2e-80
 Identities = 80/445 (17%), Positives = 154/445 (34%), Gaps = 75/445 (16%)

Query: 43  PARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDE--GQSYLTSGKHGETPE--PF 98
                      +           + +   +  WG+      G   L   K  + P   PF
Sbjct: 3   HHHHHHMSHIINAQEDY-KHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPF 61

Query: 99  PLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQS 158
               EA ++  A G  H +++ E   V++WG            D G+ G   +D++  + 
Sbjct: 62  LPRDEAKIISFAVGGMHTLALDEESNVWSWGC----------NDVGALG---RDTSNAKE 108

Query: 159 ALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVA 218
            L    A  S      ++ +   T +       P   +              G K+ ++A
Sbjct: 109 QLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAE--------------GHKVVQLA 154

Query: 219 AGGRHTLILSDMGQVWGWGYG--GEGQLGLGS-RIKMVPTPHLIPCLEHAASGKDRPLLV 275
           A    +  L   G+V+ WG     EG LG    +IK+  TP  +P               
Sbjct: 155 ATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFS------------ 202

Query: 276 RQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYA 335
                       +  + ++A G  H   + + G +  +G G   Q G          +  
Sbjct: 203 ------------KYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLD 250

Query: 336 SSLMDI-QVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPI--L 392
                +  V+ IA+G  H   ++ + ++  +G NQFGQ G   D  +         +   
Sbjct: 251 PRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP 310

Query: 393 ESKRAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSI------------DRNIPSL 440
           ++   + ++ G  HS +L++DG + S G     ++G+                 R +P  
Sbjct: 311 DNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLP 370

Query: 441 VPIHGFLP-RNIACGWWHTLLLAET 464
             ++     +++A G  H++ +A+ 
Sbjct: 371 TKLNNVPKFKSVAAGSHHSVAVAQN 395
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query467
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.95
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.35
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 95.98
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.96
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.86
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 94.6
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 94.3
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 92.91
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 92.76
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 90.98
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 88.52
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 88.14
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 86.55
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 86.46
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 86.09
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 85.79
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 80.44
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 80.08
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2e-73  Score=566.80  Aligned_cols=373  Identities=27%  Similarity=0.455  Sum_probs=317.8

Q ss_pred             cccchhhceeeeeEEEEeecC-CCCCCCCC--CCccceecccCCCCCceeeecCCcceeEEEecCCcEEEecCCCCCCCc
Q 012245            8 REENEKMEECKETVVYMWGYL-PGTSPEKS--PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS   84 (467)
Q Consensus         8 ~~~~~~~~~~~~~~v~~WG~~-~~~~~~~~--~~~~p~~~~~~~~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~l   84 (467)
                      .++.+.++++.+++||+||.| .+||+...  ....|+|+..+...+|++|++|.. |+++|+++|+||+||.|. .|||
T Consensus         8 ~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-~~~~l~~~G~v~~wG~n~-~GqL   85 (389)
T 3kci_A            8 SSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQ-TLFAVTADGKLYATGYGA-GGRL   85 (389)
T ss_dssp             -------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETT-EEEEEETTSCEEEEECCG-GGTT
T ss_pred             cCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCC-eEEEEcCCCcEEEEECCC-CCCC
Confidence            456677899999999999999 79998654  345677777777889999999964 999999999999999998 8999


Q ss_pred             cccCCCCcCcccccCCCCCC--CeeEEecCccEEEEEecCCcEEEeeCCCCcCCCccccccCCCCccccCcCCCCCCCCC
Q 012245           85 YLTSGKHGETPEPFPLPTEA--SVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT  162 (467)
Q Consensus        85 g~~~~~~~~~p~~v~~~~~~--~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~  162 (467)
                      |.+.......|.+++.+...  ++++|+||..|++||+++|+||+||.|.+||||...                      
T Consensus        86 G~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~----------------------  143 (389)
T 3kci_A           86 GIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN----------------------  143 (389)
T ss_dssp             SSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSS----------------------
T ss_pred             CCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCC----------------------
Confidence            99987777788877755544  458999999999999999999999999999777421                      


Q ss_pred             CCCCCCCcccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeCCCeeEEEecCCcEEEEEcCCCc
Q 012245          163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEG  242 (467)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~g  242 (467)
                                                        ......|+++..+.+.+|++|+||.+|++||+++|+||+||.|.+|
T Consensus       144 ----------------------------------~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~G  189 (389)
T 3kci_A          144 ----------------------------------RSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYG  189 (389)
T ss_dssp             ----------------------------------CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGG
T ss_pred             ----------------------------------CccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCC
Confidence                                              1123457777777777999999999999999999999999999999


Q ss_pred             ccCCCCCCccccCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecC--ceEEEEecCCcEEEEeeCCCCc
Q 012245          243 QLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGG--RHSAVVTDAGALLTFGWGLYGQ  320 (467)
Q Consensus       243 qlg~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~--~~s~~lt~~g~v~~wG~n~~gq  320 (467)
                      |||.+.. .....|+++..+..                        .+|++|+||.  +|+++|+++|+||+||.|.+||
T Consensus       190 qLG~~~~-~~~~~p~~v~~~~~------------------------~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~Gq  244 (389)
T 3kci_A          190 RLGHSDS-EDQLKPKLVEALQG------------------------HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGK  244 (389)
T ss_dssp             TTCSSSC-CCEEEEEECGGGTT------------------------SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGT
T ss_pred             CcCCCCC-cccccceEecccCC------------------------CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCC
Confidence            9999876 34467777776655                        6799999995  8999999999999999999999


Q ss_pred             ccCCCCCCccCceeccccCCccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCCCccceeeecCccCCCceEEE
Q 012245          321 CGHGSTNDQLRPSYASSLMDIQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVV  400 (467)
Q Consensus       321 lG~~~~~~~~~p~~v~~~~~~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~~i~~i  400 (467)
                      ||.+.......|++++.+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.......|..++.  +...+|++|
T Consensus       245 LG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~--l~~~~v~~i  322 (389)
T 3kci_A          245 LGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG--LQGKKVIAI  322 (389)
T ss_dssp             TSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG--GTTCCEEEE
T ss_pred             CCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEecc--CCCCCEEEE
Confidence            999998888999999999888999999999999999999999999999999999998888888888774  677899999


Q ss_pred             EecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEee-cCCCceEEEEecCCeEEEEEcCC
Q 012245          401 SCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVP-IHGFLPRNIACGWWHTLLLAETT  465 (467)
Q Consensus       401 ~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~p~~v~-~~~~~v~~v~~G~~hs~~l~~~g  465 (467)
                      +||.+|++||+++|+||+||.|.+||||.|+..+...|++|+ +.+.+|.+|+||.+||+||++++
T Consensus       323 a~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~~~~  388 (389)
T 3kci_A          323 ATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWSTSK  388 (389)
T ss_dssp             EECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEECC--
T ss_pred             EeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEEEEEecCCcEEEEecCC
Confidence            999999999999999999999999999999999999999998 66789999999999999999875
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 467
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 6e-42
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-25
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-20
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-18
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-17
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-11
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-15
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-09
d1jtdb_ 273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-04
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (382), Expect = 6e-42
 Identities = 98/406 (24%), Positives = 158/406 (38%), Gaps = 22/406 (5%)

Query: 63  ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEA 122
              ++E G ++T G   D GQ  L      E  +P  +     VV+A AG  H V ++++
Sbjct: 8   RSHSTEPGLVLTLGQ-GDVGQLGLGENVM-ERKKPALVSIPEDVVQAEAGGMHTVCLSKS 65

Query: 123 GEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKT 182
           G+VY++G  +      + RD    GS       +      + +      A      R   
Sbjct: 66  GQVYSFGCNDE---GALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFL 122

Query: 183 SSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEG 242
             +  ++       E    S   V +   V + KVA+G  H ++L+  G ++  G G +G
Sbjct: 123 WGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQG 182

Query: 243 QLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSA 302
           QLG    +                 G +R L+ +   + S G  G    ++  CG   + 
Sbjct: 183 QLGRVPELFANRGGR---------QGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTF 233

Query: 303 VVTDAGALLTFGWGLYGQCGHGSTNDQLRPSYAS--SLMDIQVEQIAAGLWHTVCISVEG 360
            ++  G +  FG   Y Q G   T     P   +            + G  HTVC+  EG
Sbjct: 234 AISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEG 293

Query: 361 RVYVFGGNQFGQLGTGVDQAENVPKLLETPILESKRAKVVSCGARHSAVLTEDGQVLSWG 420
           + Y  G  ++G+LG G        K + T I        V+CGA     +T+DG+V +WG
Sbjct: 294 KAYSLGRAEYGRLGLGEG---AEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWG 350

Query: 421 WNKYGQLGLGDSIDRNIPSLVPIHGFLPRN---IACGWWHTLLLAE 463
                QLG G   D   P  +       R    ++ G  HT+LL +
Sbjct: 351 MGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 396
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query467
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.76
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.45
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 93.33
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 88.09
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 86.8
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 84.28
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-61  Score=478.24  Aligned_cols=376  Identities=25%  Similarity=0.390  Sum_probs=303.8

Q ss_pred             chhhceeeeeEEEEeecC-CCCCCCCCCC-ccceecccCCCCCceeeecCCcceeEEEecCCcEEEecCCCCCCCccccC
Q 012245           11 NEKMEECKETVVYMWGYL-PGTSPEKSPI-LSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTS   88 (467)
Q Consensus        11 ~~~~~~~~~~~v~~WG~~-~~~~~~~~~~-~~p~~~~~~~~~~i~~v~~g~~~~~~~l~~~G~vy~wG~~~~~g~lg~~~   88 (467)
                      .|=+.++.+|+||+||.| .+|||.+... ..+.|.++....+|++|++|.. |++||+++|+||+||.|. .||||.+.
T Consensus         6 ~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~ia~G~~-h~~al~~~G~vy~wG~n~-~GQLG~g~   83 (401)
T d1a12a_           6 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGM-HTVCLSKSGQVYSFGCND-EGALGRDT   83 (401)
T ss_dssp             CCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSS-EEEEEETTSCEEEEECCT-TSTTCSCC
T ss_pred             eEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCCCeEEEEeCCC-EEEEEeCCCEEEEEeCCC-CCCCCccc
Confidence            456789999999999999 7999987543 3555555555578999999975 999999999999999997 89999988


Q ss_pred             CCCcCcccccCCCCCCCeeEEecCccEEEEEecCCcEEEeeCCCCcCCCccccccCCCCccccCcCCCCCCCCCCCCCCC
Q 012245           89 GKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPS  168 (467)
Q Consensus        89 ~~~~~~p~~v~~~~~~~i~~is~G~~h~~aLt~~G~v~~wG~n~~g~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  168 (467)
                      ......|.+.......+|++|+||..|+++++++|+||+||.+...+++...           .                
T Consensus        84 ~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~-----------~----------------  136 (401)
T d1a12a_          84 SVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGL-----------L----------------  136 (401)
T ss_dssp             CSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEES-----------S----------------
T ss_pred             ccccccccccccccccceeeecccccceeeccccccceeccccccccccccc-----------c----------------
Confidence            7777777777777788999999999999999999999999987654222100           0                


Q ss_pred             CcccCcceeeecccccccccCCCCCCCCCcccccceEEecCCCCcEEEEEeCCCeeEEEecCCcEEEEEcCCCcccCCCC
Q 012245          169 DKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGS  248 (467)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~alt~~G~vy~wG~n~~gqlg~~~  248 (467)
                                                  ......+..+......+|++|+||..|+++++++|++|+||.|.+||||...
T Consensus       137 ----------------------------~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~  188 (401)
T d1a12a_         137 ----------------------------EPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVP  188 (401)
T ss_dssp             ----------------------------BBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCG
T ss_pred             ----------------------------CCccccceeeeeccCCceeEEEecccceeeeecCCcccccccCCccccCCCC
Confidence                                        0011123334444556899999999999999999999999999999999865


Q ss_pred             CCccc----------cCCcccccccccccCCCCcceeecCcccCCCCCCCccEEEEeecCceEEEEecCCcEEEEeeCCC
Q 012245          249 RIKMV----------PTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLY  318 (467)
Q Consensus       249 ~~~~~----------~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~g~v~~wG~n~~  318 (467)
                      .....          ..|..+...                   ........+|.+|+||.+|+++|+++|+||+||.|.+
T Consensus       189 ~~~~~~~~~~~~~~~~~p~~~~~~-------------------~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~~g~n~~  249 (401)
T d1a12a_         189 ELFANRGGRQGLERLLVPKCVMLK-------------------SRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNY  249 (401)
T ss_dssp             GGTSSSCGGGGHHHHHSCEECCCB-------------------CSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTT
T ss_pred             ccccccCCccccccccccceeecc-------------------ccCCCCCceEEEEEecCCeEEEEecCCeEeeecccce
Confidence            42111          111111111                   0111123679999999999999999999999999999


Q ss_pred             CcccCCCCCCccCceeccccCC--ccEEEEEeCCCeEEEEEcCCcEEEEeCCCCCcccCCCCCC-CccceeeecCccCCC
Q 012245          319 GQCGHGSTNDQLRPSYASSLMD--IQVEQIAAGLWHTVCISVEGRVYVFGGNQFGQLGTGVDQA-ENVPKLLETPILESK  395 (467)
Q Consensus       319 gqlG~~~~~~~~~p~~v~~~~~--~~i~~v~~G~~~~~al~~~g~vy~wG~n~~gqlG~~~~~~-~~~p~~v~~~~~~~~  395 (467)
                      +++|.........+..+..+..  ..++++++|..|+++++++|+||+||+|.+||||.+.... ...|+.++.    ..
T Consensus       250 g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~~----~~  325 (401)
T d1a12a_         250 HQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR----LP  325 (401)
T ss_dssp             STTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS----SS
T ss_pred             ecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCEEcCC----CC
Confidence            9999988887777766665443  4699999999999999999999999999999999986433 456766653    34


Q ss_pred             ceEEEEecCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEeec---CCCceEEEEecCCeEEEEEcCCC
Q 012245          396 RAKVVSCGARHSAVLTEDGQVLSWGWNKYGQLGLGDSIDRNIPSLVPI---HGFLPRNIACGWWHTLLLAETTQ  466 (467)
Q Consensus       396 ~i~~i~~G~~h~~al~~~G~vy~wG~n~~gqlG~g~~~~~~~p~~v~~---~~~~v~~v~~G~~hs~~l~~~g~  466 (467)
                      +|++|+||.+|++||+++|+||+||.|.+||||+|+..+...|++|..   .+.+|++|+||.+||++|++|++
T Consensus       326 ~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~~l~~d~~  399 (401)
T d1a12a_         326 AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE  399 (401)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECS
T ss_pred             CeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccCCCCCEEEEEEEccceEEEEEECCc
Confidence            799999999999999999999999999999999999999999999873   36689999999999999999986
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure