Citrus Sinensis ID: 012397
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | 2.2.26 [Sep-21-2011] | |||||||
| A1AK01 | 493 | Cysteine--tRNA ligase OS= | yes | no | 0.924 | 0.870 | 0.495 | 1e-117 | |
| B3E1P0 | 487 | Cysteine--tRNA ligase OS= | yes | no | 0.896 | 0.854 | 0.489 | 1e-114 | |
| A0LIR9 | 493 | Cysteine--tRNA ligase OS= | yes | no | 0.898 | 0.845 | 0.482 | 1e-113 | |
| B8GNT5 | 460 | Cysteine--tRNA ligase OS= | yes | no | 0.801 | 0.808 | 0.519 | 1e-113 | |
| Q3J8Y9 | 485 | Cysteine--tRNA ligase OS= | yes | no | 0.870 | 0.832 | 0.498 | 1e-113 | |
| Q0A7N3 | 462 | Cysteine--tRNA ligase OS= | yes | no | 0.775 | 0.779 | 0.530 | 1e-110 | |
| Q3A8C9 | 481 | Cysteine--tRNA ligase OS= | yes | no | 0.793 | 0.765 | 0.505 | 1e-110 | |
| Q39ZL8 | 485 | Cysteine--tRNA ligase OS= | yes | no | 0.907 | 0.868 | 0.466 | 1e-110 | |
| Q60BG8 | 465 | Cysteine--tRNA ligase OS= | yes | no | 0.795 | 0.793 | 0.531 | 1e-109 | |
| Q6AJ23 | 489 | Cysteine--tRNA ligase OS= | yes | no | 0.883 | 0.838 | 0.447 | 1e-109 |
| >sp|A1AK01|SYC_PELPD Cysteine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379) GN=cysS PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/440 (49%), Positives = 279/440 (63%), Gaps = 11/440 (2%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L+IYN++T +K+ F P+ GK GMYVCGVT YD H+GHARA V FD++YRYL +
Sbjct: 1 MALRIYNTLTGEKDTFVPLHPGKAGMYVCGVTVYDYCHIGHARANVVFDVIYRYLGYSGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
VTYVRNFTD+DDKII RAN G + ++S RY + + DMA L PT +P+ +DHM
Sbjct: 61 AVTYVRNFTDIDDKIINRANQEGVDYTTISERYIEAFNQDMARLGLAKPTVEPKATDHMG 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I +I +I AY +GDV++AVE P+Y RLSG+ LE+ AG RV VD RKRNP D
Sbjct: 121 GIISVIETLIAKGHAYESDGDVYYAVESFPSYLRLSGRNLEDMLAGARVEVDDRKRNPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK +K GEPSWDSPWG GRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIA
Sbjct: 181 FALWKGSKPGEPSWDSPWGAGRPGWHIECSAMSMEYLGKTFDIHGGGKDLVFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA V YWMHNG V N+EKMSKSLGNFFTIR++ E+Y P LR F++SAHYRS
Sbjct: 241 QSEAANGCQFVRYWMHNGFVNINSEKMSKSLGNFFTIREVLEQYDPETLRFFILSAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALS----PFQEHGKTARINPAAEDCINKLR-- 370
P+++S L+ A + IY L + A+ P Q + A + PA + KL+
Sbjct: 301 PIDFSDQNLNDAQAGLERIYSCLAAVDGAMEGQDVPNQPV-EGAPLPPAGAELHEKLQSL 359
Query: 371 -DEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVK 429
F M DD NT+ L G +A++ N + + P L+L+ +R++ E
Sbjct: 360 ISRFREAMDDDFNTAQAL-GVLFEAVRATNRFMAESGDQTPA--TLALLGQVRRLFAETG 416
Query: 430 EVLRILGLLPPGAYSEVKTA 449
+VL + P +K A
Sbjct: 417 DVLGLFTSQPAAWLESIKQA 436
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Pelobacter propionicus (strain DSM 2379) (taxid: 338966) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 6 |
| >sp|B3E1P0|SYC_GEOLS Cysteine--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/427 (48%), Positives = 273/427 (63%), Gaps = 11/427 (2%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L++YN+++ +KE F P V GKVGMYVCGVT YD H+GHARA + FD++YRYL
Sbjct: 1 MALRLYNTLSGEKEPFVPRVAGKVGMYVCGVTVYDFCHIGHARAGIVFDMIYRYLRFSGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
+VTY+RN+TD+DDKII RAN G + ++++RY + DM L L PT +P+ +DH+E
Sbjct: 61 DVTYIRNYTDIDDKIINRANQEGTDYRTIADRYIATFDEDMDRLGMLRPTIEPKATDHIE 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I +I ++I+N AY V+GDV+FAVE P Y +LSG+ L++ AG RV VD RKRNP D
Sbjct: 121 DIISIIQRLIDNGHAYAVDGDVYFAVETFPAYLKLSGRNLDDMLAGARVDVDERKRNPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK +K GEP W+SPWG GRPGWHIECSAMS +L FDIHGGG DL+FPHHENEIA
Sbjct: 181 FALWKGSKPGEPWWESPWGKGRPGWHIECSAMSMRFLGPSFDIHGGGKDLVFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A V YW+HNG V N+EKMSKSLGNFFTIR++ E + P LR F++ AHYRS
Sbjct: 241 QSEGANGCQFVKYWLHNGFVNINSEKMSKSLGNFFTIREVLELFDPETLRFFILQAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAA----EDCINKLRDE 372
PL+YS L A + IY+ L + AL E TA PA+ + + L
Sbjct: 301 PLDYSDQNLREAQAGLSRIYEALAALDQAL----EKPATAIHLPASAAEFAEKVAGLLPR 356
Query: 373 FHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVL 432
F M DD NT+ L G D+++ +N L + + +E LR E+ VL
Sbjct: 357 FREAMDDDFNTAQAL-GTLFDSIRTLNRLL--AEGGGSSSASRADLEQLRAAVTEIGAVL 413
Query: 433 RILGLLP 439
+ + P
Sbjct: 414 GLFRIKP 420
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Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) (taxid: 398767) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|A0LIR9|SYC_SYNFM Cysteine--tRNA ligase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/427 (48%), Positives = 271/427 (63%), Gaps = 10/427 (2%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L +YN++T+ KE F P+ GKV YVCGVT YDLSH+GHAR+A+ FD++YRYL L
Sbjct: 1 MVLHVYNTLTKSKEEFIPLEPGKVKFYVCGVTVYDLSHIGHARSAIVFDVIYRYLRFLGF 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
EVTYVRNFTDVDDKIIRRAND G + S++ RY + DM L L P +P ++++
Sbjct: 61 EVTYVRNFTDVDDKIIRRANDAGTDCRSIAQRYIAAFYEDMDALGVLRPDLEPLATENVP 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
+ ++I +++ AY DVFF +EK P YG+LSG+++E+ AG RV VD+RKRNP D
Sbjct: 121 GMIEIIRVLMDKGIAYQAGADVFFEIEKFPGYGKLSGRQIEDMLAGARVEVDARKRNPLD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
F LWK +K GEPSWDSPWGPGRPGWHIECSAM + +L FDIHGGG DLIFPHHENEIA
Sbjct: 181 FVLWKGSKPGEPSWDSPWGPGRPGWHIECSAMGSRFLGKTFDIHGGGKDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA V YW+HNG V NNEKMSKSLGNF TIR + ++ HP +R F++S HYRS
Sbjct: 241 QSEAAFGMPFVRYWLHNGFVNINNEKMSKSLGNFLTIRDVLQKVHPETVRFFVLSKHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALS-----PFQEHGKTARINPAAEDCINKLRD 371
P+++S + A + +Y TL + + FQE + +P D I L
Sbjct: 301 PVDFSDETIGEAEKGLERLYGTLGAVKERAAAGVEEAFQEKALRGQ-DPELFDQIAALSG 359
Query: 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEV 431
F M +D NT+ L F + + L+ +KQ K +L R + +++
Sbjct: 360 AFREAMDNDFNTAQALGNLFS-LQRHLQRFLDKFGRKQLKGPASALA---RAGADAIRDH 415
Query: 432 LRILGLL 438
+LGLL
Sbjct: 416 ALVLGLL 422
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Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|B8GNT5|SYC_THISH Cysteine--tRNA ligase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/393 (51%), Positives = 262/393 (66%), Gaps = 21/393 (5%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
L+I+NS+T++KE FTP+ G+V MYVCG+T YD HLGHAR V FD++YRYL+ L +V
Sbjct: 2 LQIHNSLTRRKETFTPMEPGRVRMYVCGMTVYDYCHLGHARVLVVFDVVYRYLKALGFDV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TY+RN TD+DDKIIRRA + GE+ +L++R+ D L LPP+ +PR ++H++ +
Sbjct: 62 TYIRNITDIDDKIIRRAAENGEDIRALTDRFIAAMHEDAEALGVLPPSAEPRATEHIDGM 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI ++ AY + GDV++AV K YGRLSG+RLE+ RAGERVA D KR+P DF
Sbjct: 122 LAMIGTLVERGYAYAGDNGDVYYAVAKFEPYGRLSGKRLEDLRAGERVAPDEAKRDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK GEP+WDSPWGPGRPGWHIECSAMS HYL + FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKPGEPAWDSPWGPGRPGWHIECSAMSTHYLGNHFDIHGGGQDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S AA + V+YWMHNG V N EKMSKSLGNFFT+R++ RY +R+F++S+HYRSP
Sbjct: 242 SEAATCEHFVNYWMHNGFVRVNEEKMSKSLGNFFTVREVLARYPAEVVRYFILSSHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS LD+A + +Y L+ + ++PA + R F A M
Sbjct: 302 LNYSDEPLDAARAGLTRLYTALRGVQA-------------VDPAGQG--EGYRRRFQAAM 346
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQP 410
DD NT + F I LN L+ + P
Sbjct: 347 DDDFNTPVAMAVLFD-----IARELNRLRDEDP 374
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Thioalkalivibrio sp. (strain HL-EbGR7) (taxid: 396588) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q3J8Y9|SYC_NITOC Cysteine--tRNA ligase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/421 (49%), Positives = 267/421 (63%), Gaps = 17/421 (4%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
L+IYNS+T++KE F PI GKV MYVCG+T YDL H+GHAR V FD++ RYL EV
Sbjct: 2 LRIYNSLTRRKEEFIPIESGKVRMYVCGMTVYDLCHVGHARVMVVFDMVVRYLRASGFEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YVRN TD+DDKII RAN+ GE+ +L+ RY Q D A LQ LPP +PR ++ ME I
Sbjct: 62 IYVRNITDIDDKIIHRANERGESIHTLTARYIQALHEDEASLQILPPDREPRATESMEAI 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
M+ Q+++ AY E GD+++ V YG LSG+ LE+ RAGERV V+ K +P DF
Sbjct: 122 LAMVRQLLDQGYAYQGENGDIYYDVSHFEGYGALSGRHLEDLRAGERVQVNEAKTDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK+GEP+W+SPWGPGRPGWHIECSAMS L + FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKSGEPAWESPWGPGRPGWHIECSAMSIQELGTHFDIHGGGQDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S AA V+YWMHNG V N+EKMSKSLGNFFT+R++ E YHP LR+F++S+HYRSP
Sbjct: 242 SEAATGGKFVNYWMHNGFVRLNDEKMSKSLGNFFTVREVLEHYHPEVLRYFILSSHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNY+ QLD+A A+ +Y L+ G + + + + R+ M
Sbjct: 302 LNYTKQQLDTAKAAMTRLYTALRGIPRGEDRASAQGLSWEFTDGGDPFVLRFREA----M 357
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT L L + +LN ++ ++ SL LR + ILGL
Sbjct: 358 DDDFNTPEALA-----LLNEVRHALNRAREAGDTEKGQSLAVLLRSLGG-------ILGL 405
Query: 438 L 438
L
Sbjct: 406 L 406
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Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) (taxid: 323261) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q0A7N3|SYC_ALHEH Cysteine--tRNA ligase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=cysS PE=3 SV=2 | Back alignment and function description |
|---|
Score = 399 bits (1026), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/375 (53%), Positives = 245/375 (65%), Gaps = 15/375 (4%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
L I+NS+TQ+KE F PI G V MYVCG+T YD HLGHARA V FD++ RYL HL V
Sbjct: 2 LHIHNSLTQRKERFEPIQPGHVRMYVCGMTVYDYCHLGHARALVVFDMVARYLRHLGYRV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
T+VRN TD+DDKIIRRA +LGE +++ R+ + D L LPP ++PR + H++ I
Sbjct: 62 TFVRNITDIDDKIIRRAAELGEPMGAVTERFIRAMHEDAEALGVLPPDHEPRATGHIDDI 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI +++ AYV + GDV+FAV P YG+LSG+R E+ RAG RV VD KR+P DF
Sbjct: 122 IAMIERLVERGHAYVADDGDVYFAVSSYPEYGKLSGERQEDLRAGARVEVDEGKRDPVDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
ALWKAA+ GEP+W SPWG GRPGWHIECSAMS L FDIHGGG+DL FPHHENEIAQ
Sbjct: 182 ALWKAARPGEPAWPSPWGEGRPGWHIECSAMSTQVLGDHFDIHGGGLDLKFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S A V+YWMHNGHV N+EKM+KSLGNFFT+R++ + A+R FL+S+HYRSP
Sbjct: 242 SECATGHPFVNYWMHNGHVRINDEKMAKSLGNFFTVREVLSEHRAEAVRLFLLSSHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS+ L A A+ +Y L+ A P E R FHA M
Sbjct: 302 LNYSLDGLRQAQGALERLYLALRGLPEA--------------PVPEADPQGFRARFHAAM 347
Query: 378 SDDLNTSHILTGAFQ 392
DD NT L F+
Sbjct: 348 DDDFNTPEALAVLFE 362
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Alkalilimnicola ehrlichei (strain MLHE-1) (taxid: 187272) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q3A8C9|SYC_PELCD Cysteine--tRNA ligase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/390 (50%), Positives = 256/390 (65%), Gaps = 22/390 (5%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
++L++YN+MT +KE F P+ GKVGMYVCGVT YD H+GHARA V FD++YRYL+ +
Sbjct: 1 MSLRVYNTMTGRKEEFEPLQPGKVGMYVCGVTVYDYCHIGHARANVVFDIIYRYLQFIGF 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
+VTYVRN+TDVDDKII+RAN+ G + +L+ + Q + DM L PT QP+ + H++
Sbjct: 61 DVTYVRNYTDVDDKIIKRANERGISSDTLAGEFIQAFDEDMNRLGLAEPTIQPKATCHID 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I +++ ++I+ AY +GDV+F+VE P+Y +LS + ++ R+G R+ +KRNP D
Sbjct: 121 HIVNLVQRLIDRGIAYESQGDVYFSVEDFPSYLKLSKRNMDEMRSGARITPGEQKRNPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWKAAK GEPSW+SPWGPGRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIA
Sbjct: 181 FALWKAAKPGEPSWESPWGPGRPGWHIECSAMSMEYLGESFDIHGGGKDLVFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A V YW+HNG V N EKMSKSLGNFFTIR I + Y P LR F+++AHYRS
Sbjct: 241 QSEGATGKPFVKYWLHNGFVNVNQEKMSKSLGNFFTIRDILQTYDPEVLRFFILTAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAA-------EDCINKL 369
P+++S Q LQD + LS F E A AA + L
Sbjct: 301 PIDFSD--------------QNLQDARLGLSRFYEGLHAASEVLAACPPGDVTSEAGATL 346
Query: 370 RDEFHARMSDDLNTSHILTGAFQDALKFIN 399
+ F M DD NT+ + G DA++ IN
Sbjct: 347 ENVFREAMDDDFNTAAAI-GHLFDAVRTIN 375
|
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) (taxid: 338963) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q39ZL8|SYC_GEOMG Cysteine--tRNA ligase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/431 (46%), Positives = 273/431 (63%), Gaps = 10/431 (2%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
++L++YN+++ KE FTP+V G+V MYVCGVT YD H+GHARA V FD++YRYL H
Sbjct: 1 MSLRVYNTLSGTKEEFTPLVPGRVSMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
+VTYVRN+TDVDDKII RAN G ++S R+ E+ DMA L PT+QP+ ++H+
Sbjct: 61 DVTYVRNYTDVDDKIINRANQEGVPYNAISERFIAEFDRDMAALGLDLPTHQPKATEHIA 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
++ D+I+++I AY +GDV+F VEK Y +LS + L+ +AG R+ V +KR+P D
Sbjct: 121 EMIDVISRLIEKGFAYAADGDVYFCVEKFDPYLKLSKRNLDEMQAGARIEVGEKKRHPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK +K GEP W+SPWG GRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIA
Sbjct: 181 FALWKGSKPGEPFWESPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA YW+HNG V N+EKMSKSLGNFFTI+++ E+Y LR FL+SAHYRS
Sbjct: 241 QSEAANGKPFAHYWIHNGFVNINSEKMSKSLGNFFTIKEVLEKYDAEVLRFFLLSAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
P+++S L A + IY TL + L+ E AE + + F
Sbjct: 301 PIDFSDQNLREAEAGLERIYGTLAGIDENLTKGAEGTAEETDRELAEKAVT-FPERFREA 359
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 436
M DD NT+ L F + S+ +L + + +L+ R + +++V +LG
Sbjct: 360 MDDDFNTAQALGFVFD----LVRSANRVLGEGKGGGSNRALLAEAR---DRIRKVGAVLG 412
Query: 437 LLP--PGAYSE 445
+ P A++E
Sbjct: 413 IFTSEPRAFAE 423
|
Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q60BG8|SYC_METCA Cysteine--tRNA ligase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/382 (53%), Positives = 247/382 (64%), Gaps = 13/382 (3%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QKE F P+ +V MYVCG+T YD HLGHAR V FD++ RYL HL +V
Sbjct: 2 LKIYNSLTRQKEEFRPLEPRRVRMYVCGMTVYDYCHLGHARVMVVFDMVARYLRHLGLKV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TYVRN TD+DDKIIRRA + GE +L+ R+ + D L LPP ++PR ++ ++ I
Sbjct: 62 TYVRNVTDIDDKIIRRAVENGETIGALTARFIEAMHEDERALGVLPPDHEPRATESIDDI 121
Query: 139 KDMITQIINNDCAYV-VEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI +I AYV GDVF+AV PNYGRLSG+ L+ RAGER+ VD KR+P DF
Sbjct: 122 LAMIGTLIERGHAYVGSNGDVFYAVASFPNYGRLSGKNLDELRAGERIEVDEAKRDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK+AK GEP W SPWGPGRPGWHIECSAMS L + FDIHGGG+DL FPHHENEIAQ
Sbjct: 182 VLWKSAKPGEPFWASPWGPGRPGWHIECSAMSTRCLGAHFDIHGGGMDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S A + V+YWMHNG V N EKMSKSLGNFFT+R+I RY P +R F++++HYRSP
Sbjct: 242 SEGATGEHFVNYWMHNGFVRINEEKMSKSLGNFFTVREILARYRPEVVRFFILNSHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS LD A+ A+ +Y L+ L P P ED F M
Sbjct: 302 LNYSDENLDEAAAALSRLYTALRGLAPDL-PL----------PLGEDRDEGFSSRFADAM 350
Query: 378 SDDLNTSHILTGAFQDALKFIN 399
DD NT + F D + IN
Sbjct: 351 QDDFNTPEAIAVLF-DLAREIN 371
|
Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) (taxid: 243233) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
| >sp|Q6AJ23|SYC_DESPS Cysteine--tRNA ligase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=cysS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/427 (44%), Positives = 279/427 (65%), Gaps = 17/427 (3%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ +++YN+++ +KE PI V +YVCG+T+YD H+GHAR+A++FD++ RYL +L
Sbjct: 1 MDIRVYNTLSGKKEPLQPIEPNHVKLYVCGITSYDYCHIGHARSALAFDMIVRYLRYLDY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
+VT+VRNFTD+DDKII RAN+ G +L+ R+ E+ DM +L L P +P+ ++H++
Sbjct: 61 KVTFVRNFTDIDDKIIARANETGVTAQALAERFIDEFHTDMDNLGTLRPDIEPKATEHIQ 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
++ D+I ++++ D AY GDV++ V P YG+LSG+ +E+ +AG R++++ +KRNP D
Sbjct: 121 EMIDIIQELVDKDMAYPSAGDVYYVVNSFPEYGKLSGRNIEDMQAGARISINEQKRNPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWKA+K GEPSW+SPWGPGRPGWHIECSAMS YL FDIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKASKPGEPSWESPWGPGRPGWHIECSAMSRKYLGENFDIHGGGKDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A + W+H+G VT +EKMSKSLGNF TI+ I + YHP LR F+ S YR+
Sbjct: 241 QSEGANGKPFANTWIHHGFVTIKDEKMSKSLGNFLTIKDILDHYHPEILRAFIFSTQYRN 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPA---AEDC--INKLRD 371
PL++S + + A A+ +Y+ L D Q+ K PA A+D +N +
Sbjct: 301 PLDFSEIAMQDAETALVRLYECLHD-------IQQLAKGDPTLPALISAKDAAKLNSIET 353
Query: 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEV 431
F M++D NT+ L G DA+K IN + L P + +++ + ++++
Sbjct: 354 RFQEAMNNDFNTALAL-GVLYDAIKIINRAQRALTDT-PSALDVKMLKGSMTL---IQKL 408
Query: 432 LRILGLL 438
I+GLL
Sbjct: 409 AGIVGLL 415
|
Desulfotalea psychrophila (strain LSv54 / DSM 12343) (taxid: 177439) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | ||||||
| 359475690 | 513 | PREDICTED: cysteinyl-tRNA synthetase-lik | 0.922 | 0.834 | 0.794 | 0.0 | |
| 224111652 | 532 | predicted protein [Populus trichocarpa] | 0.922 | 0.804 | 0.784 | 0.0 | |
| 359496172 | 513 | PREDICTED: cysteinyl-tRNA synthetase-lik | 0.922 | 0.834 | 0.790 | 0.0 | |
| 449464950 | 562 | PREDICTED: cysteine--tRNA ligase-like [C | 0.922 | 0.761 | 0.773 | 0.0 | |
| 255585350 | 530 | cysteinyl-tRNA synthetase, putative [Ric | 0.924 | 0.809 | 0.751 | 0.0 | |
| 356575566 | 553 | PREDICTED: cysteinyl-tRNA synthetase-lik | 0.922 | 0.773 | 0.736 | 0.0 | |
| 356536300 | 548 | PREDICTED: cysteinyl-tRNA synthetase-lik | 0.922 | 0.781 | 0.739 | 0.0 | |
| 357444709 | 552 | Cysteinyl-tRNA synthetase [Medicago trun | 0.926 | 0.778 | 0.728 | 0.0 | |
| 15241557 | 511 | cysteinyl-tRNA synthetase [Arabidopsis t | 0.935 | 0.849 | 0.687 | 1e-180 | |
| 297801734 | 511 | tRNA synthetase class I (C) family prote | 0.935 | 0.849 | 0.691 | 1e-180 |
| >gi|359475690|ref|XP_003631732.1| PREDICTED: cysteinyl-tRNA synthetase-like [Vitis vinifera] gi|296087508|emb|CBI34097.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/429 (79%), Positives = 387/429 (90%), Gaps = 1/429 (0%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
L++YN+MTQQKE+F P+V GKV MYVCGVTAYDLSHLGHARAAV FD+LYRYL+HL EV
Sbjct: 7 LRVYNTMTQQKEIFKPVVDGKVSMYVCGVTAYDLSHLGHARAAVCFDVLYRYLQHLGYEV 66
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TYVRNFTDVDDKIIRRAN+LGENPL+LS+R+CQEYL DM DLQCL PT QPRVSDHM+QI
Sbjct: 67 TYVRNFTDVDDKIIRRANELGENPLTLSSRFCQEYLDDMTDLQCLTPTQQPRVSDHMDQI 126
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
KDMITQIINNDCAY+++GDV+FAV+KSPNYGRLSG++LE+NRAGERVAVDSRKRNPADFA
Sbjct: 127 KDMITQIINNDCAYIIDGDVYFAVDKSPNYGRLSGRKLEDNRAGERVAVDSRKRNPADFA 186
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWKAAK EPSWDSPWGPGRPGWHIECSAMSAHYL+ KFDIHGGGIDLIFPHHENEIAQS
Sbjct: 187 LWKAAKPDEPSWDSPWGPGRPGWHIECSAMSAHYLTFKFDIHGGGIDLIFPHHENEIAQS 246
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
CAACQ+SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQIT+ YHPLALR+FL+ HYRSP+
Sbjct: 247 CAACQESNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITDLYHPLALRYFLLGTHYRSPV 306
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE-HGKTARINPAAEDCINKLRDEFHARM 377
NYS+ QL+ AS+AVFYIYQTL+DCE LSPFQE +G+ I PAA+DCI+KL+ +F +M
Sbjct: 307 NYSIAQLEIASEAVFYIYQTLRDCEDTLSPFQEVNGQNVCITPAAKDCISKLQTDFQTKM 366
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
SDDL+T HIL + Q+AL+FINS LNMLKKKQ KQQQLS ++SL ++E EVK VL +LGL
Sbjct: 367 SDDLSTPHILNASLQEALRFINSGLNMLKKKQQKQQQLSAVQSLTELEKEVKGVLSVLGL 426
Query: 438 LPPGAYSEV 446
L AYSEV
Sbjct: 427 LSTLAYSEV 435
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111652|ref|XP_002315932.1| predicted protein [Populus trichocarpa] gi|222864972|gb|EEF02103.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/437 (78%), Positives = 385/437 (88%), Gaps = 9/437 (2%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LK+YNSMTQQKE+F + GKV MYVCGVT+YD SHLGHARAAV+FD+L+RYL+HL EV
Sbjct: 7 LKLYNSMTQQKEVFKSRIPGKVSMYVCGVTSYDFSHLGHARAAVAFDILFRYLQHLGYEV 66
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TYVRNFTD+DDKIIRRAN++GE+PLSLS+R+C+EYLVDM DLQCL PT+QPRV+DH+EQI
Sbjct: 67 TYVRNFTDIDDKIIRRANEIGEDPLSLSSRFCEEYLVDMTDLQCLIPTHQPRVTDHVEQI 126
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
KDMITQII DCAY VEGDVFFAV KSPNYG+LSGQRLENNRAGERVAVDSRKRNPADFA
Sbjct: 127 KDMITQIIEKDCAYAVEGDVFFAVNKSPNYGQLSGQRLENNRAGERVAVDSRKRNPADFA 186
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWKAAK GEPSW+SPWGPGRPGWHIECSAMSA YL+ KFDIHGGGIDLIFPHHENEIAQS
Sbjct: 187 LWKAAKPGEPSWESPWGPGRPGWHIECSAMSAQYLTFKFDIHGGGIDLIFPHHENEIAQS 246
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
CAAC++S+VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL
Sbjct: 247 CAACEESSVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 306
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE------HGKTAR---INPAAEDCINKL 369
NYSV QL+S+SDAVFYIYQTLQDCE AL PFQE G+ A I A+ CI++L
Sbjct: 307 NYSVSQLESSSDAVFYIYQTLQDCEDALLPFQEGSLKEGAGQNANLVAITADAQKCISRL 366
Query: 370 RDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVK 429
++F +MSDDLNTS +LTGAFQ+ALK +N SL MLKKKQ K+QQLSLI S+ +++ EV
Sbjct: 367 HEDFETKMSDDLNTSPLLTGAFQEALKVVNGSLGMLKKKQQKKQQLSLIRSVTEVKKEVT 426
Query: 430 EVLRILGLLPPGAYSEV 446
EVLRILGL PP +EV
Sbjct: 427 EVLRILGLFPPCTCAEV 443
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496172|ref|XP_002262997.2| PREDICTED: cysteinyl-tRNA synthetase-like [Vitis vinifera] gi|297735988|emb|CBI23962.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/429 (79%), Positives = 381/429 (88%), Gaps = 1/429 (0%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
L++YN+MTQQKE+ P+V GKV MYVCGVTAYDLSHLGH RAAVSFD+LYRYL+HL EV
Sbjct: 7 LRVYNTMTQQKEILKPVVDGKVSMYVCGVTAYDLSHLGHGRAAVSFDVLYRYLQHLGYEV 66
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TYVRNFTDVDDKIIRRAN+LGENPL+LS+ +CQEYL DM DL CL PT+QPRVSDHM+QI
Sbjct: 67 TYVRNFTDVDDKIIRRANELGENPLTLSSHFCQEYLDDMTDLHCLSPTHQPRVSDHMDQI 126
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
KDMITQIINNDCAY ++GDV+FAV+KSPNYGRLSG++LENNRAGERVAVDSRKRNPADFA
Sbjct: 127 KDMITQIINNDCAYTIDGDVYFAVDKSPNYGRLSGRKLENNRAGERVAVDSRKRNPADFA 186
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWKAAK GEPSWDSPWGPGRPGWHIECSAMSAHYL+ KFDIHGGGIDLIFPHHENEIAQS
Sbjct: 187 LWKAAKPGEPSWDSPWGPGRPGWHIECSAMSAHYLTFKFDIHGGGIDLIFPHHENEIAQS 246
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
CAACQ+SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQIT+ YHPLALR+FL+ HYRSP+
Sbjct: 247 CAACQESNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITDLYHPLALRYFLLGTHYRSPV 306
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE-HGKTARINPAAEDCINKLRDEFHARM 377
NYS+ QL+ AS+AVFYIYQTL+DCE LS FQE +G+ I PAA+DCI L+ +F +M
Sbjct: 307 NYSIAQLEIASEAVFYIYQTLRDCEDTLSLFQEVNGRNVCIAPAAQDCIRTLQTDFQTKM 366
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
SDDL+T HIL + Q+AL+FINS LNMLKKKQ KQQQLS +ESL K+ EVK VL +LGL
Sbjct: 367 SDDLSTPHILNASLQEALRFINSCLNMLKKKQQKQQQLSAVESLTKLGKEVKGVLSVLGL 426
Query: 438 LPPGAYSEV 446
L AYSEV
Sbjct: 427 LSTLAYSEV 435
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464950|ref|XP_004150192.1| PREDICTED: cysteine--tRNA ligase-like [Cucumis sativus] gi|449508099|ref|XP_004163218.1| PREDICTED: cysteine--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/437 (77%), Positives = 381/437 (87%), Gaps = 9/437 (2%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
++YNSMTQQKE+FT GKVGMYVCG+TAYD SH+GHARAAV+FD+LYRYL+HL EV
Sbjct: 6 FRVYNSMTQQKEVFTTKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRYLKHLGYEV 65
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TYVRNFTDVDDKIIRRAN+ GENP +LS+R+CQEYL DMADLQCL PT+QPRVSDH+EQI
Sbjct: 66 TYVRNFTDVDDKIIRRANESGENPFALSDRFCQEYLSDMADLQCLSPTHQPRVSDHLEQI 125
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
KDMITQII N Y V+GDVFF+V+K PNYG+LSGQ+LEN+RAGERVAVDSRK NPADFA
Sbjct: 126 KDMITQIIKNGYGYAVDGDVFFSVDKFPNYGQLSGQKLENHRAGERVAVDSRKNNPADFA 185
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWKAAK GEPSW+SPWGPGRPGWHIECSAMSAHYL+ KFDIHGGGIDLIFPHHENE+AQS
Sbjct: 186 LWKAAKPGEPSWESPWGPGRPGWHIECSAMSAHYLTFKFDIHGGGIDLIFPHHENEVAQS 245
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
CAACQ+S +SYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPL LRHFLISAHYRSPL
Sbjct: 246 CAACQESKISYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLVLRHFLISAHYRSPL 305
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINP---AAEDCINKL 369
NY+V QLDSASD V+YIYQT+QDCE ALS Q GKT + +P AAE+CI L
Sbjct: 306 NYTVSQLDSASDTVYYIYQTMQDCEDALSQHQGENLSDGLGKTGKKDPVSSAAEECIINL 365
Query: 370 RDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVK 429
R EF RM+DDLNT+HILTGAFQ+ALKFINS+L LKKKQPK+QQLS+I+SL ++ E++
Sbjct: 366 RSEFQTRMADDLNTAHILTGAFQEALKFINSTLTSLKKKQPKKQQLSMIQSLVNVKKELR 425
Query: 430 EVLRILGLLPPGAYSEV 446
EVL +LGLL YSEV
Sbjct: 426 EVLDVLGLLSTSTYSEV 442
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585350|ref|XP_002533372.1| cysteinyl-tRNA synthetase, putative [Ricinus communis] gi|223526794|gb|EEF29017.1| cysteinyl-tRNA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/439 (75%), Positives = 376/439 (85%), Gaps = 10/439 (2%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ K+YN+M +Q E F P V GKVGMYVCGVTAY SH+GHARAAV FD+L+RYL+HL
Sbjct: 5 VEFKLYNTMNRQLEAFKPHVPGKVGMYVCGVTAYAFSHIGHARAAVIFDVLFRYLQHLGY 64
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
EVTY RNFTD+DDKII+RAN+ GE+P SLS+R+C+EYLVDM LQCL PT+QPRV+DH+E
Sbjct: 65 EVTYARNFTDIDDKIIKRANESGEDPFSLSSRFCEEYLVDMDSLQCLRPTHQPRVTDHIE 124
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
QIKDMITQIINN AY EGDVFFAV+K PNYG+LSGQ+LEN+RAGER D+RKRNPAD
Sbjct: 125 QIKDMITQIINNGFAYPSEGDVFFAVDKFPNYGQLSGQKLENHRAGERNP-DTRKRNPAD 183
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWKAAK GEPSW+SPWGPGRPGWHIECSAMSA YL+ KFDIHGGG DLIFPHHENEI
Sbjct: 184 FALWKAAKPGEPSWESPWGPGRPGWHIECSAMSAQYLTFKFDIHGGGSDLIFPHHENEIT 243
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AACQ+SNVSYW+HNGHVTNNNEKMSKSLGN+FTIR++TERYHPLA+RHFLISAHYRS
Sbjct: 244 QSAAACQESNVSYWIHNGHVTNNNEKMSKSLGNYFTIREVTERYHPLAVRHFLISAHYRS 303
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ---------EHGKTARINPAAEDCIN 367
PLNY+V QL+SASDA+FYIYQTLQDCE ALS FQ ++ K I A+ CIN
Sbjct: 304 PLNYTVFQLESASDAIFYIYQTLQDCEDALSMFQDGSLKEGAAQNSKVVGITADAKKCIN 363
Query: 368 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENE 427
KLRDEF +MSDDL+TSHILTGAFQDALKFINSS++MLKKK K QQLSLI+SL +IE E
Sbjct: 364 KLRDEFETKMSDDLSTSHILTGAFQDALKFINSSISMLKKKLQKPQQLSLIQSLTEIERE 423
Query: 428 VKEVLRILGLLPPGAYSEV 446
+K VL ILGLLPPG Y+E+
Sbjct: 424 IKLVLNILGLLPPGTYAEI 442
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575566|ref|XP_003555910.1| PREDICTED: cysteinyl-tRNA synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/433 (73%), Positives = 371/433 (85%), Gaps = 5/433 (1%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
+IYNSM+QQKE+F V GKV MYVCGVTAYD SHLGHARAAVSFD+L+RYL+HL E+
Sbjct: 8 FRIYNSMSQQKEIFKTKVPGKVSMYVCGVTAYDFSHLGHARAAVSFDILFRYLKHLDYEI 67
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TYVRNFTDVDDKII+RAN+ GE+PL LSNR+C EY DMADLQC P+ +PRVS+H+ +I
Sbjct: 68 TYVRNFTDVDDKIIKRANETGEDPLMLSNRFCDEYNADMADLQCKTPSKEPRVSEHLNEI 127
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
KDMITQII+N AY V+GDVF+AV+K PNYG LSGQRLE+NRAGERVAVDSRKR+PADFA
Sbjct: 128 KDMITQIISNGYAYEVDGDVFYAVDKCPNYGMLSGQRLEHNRAGERVAVDSRKRHPADFA 187
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWKAAK GEPSWDSPWGPGRPGWHIECSAMSA YL+ KFDIHGGGIDLIFPHHENEIAQS
Sbjct: 188 LWKAAKPGEPSWDSPWGPGRPGWHIECSAMSACYLTHKFDIHGGGIDLIFPHHENEIAQS 247
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
AA +S+VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL
Sbjct: 248 WAADHESHVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 307
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPF-----QEHGKTARINPAAEDCINKLRDEF 373
NYS+ QL+++SDA++YI+QTLQDC+ A+SP +++ K +IN AA++CI KL EF
Sbjct: 308 NYSISQLENSSDAIYYIFQTLQDCKDAVSPLLQGETEKNEKVPQINEAAKECIKKLNVEF 367
Query: 374 HARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLR 433
+MSDDL T ILTGA Q+ALKF+N+SL MLKKK K+ QL LI+SL ++E EV +VL
Sbjct: 368 QTKMSDDLQTPVILTGALQEALKFVNTSLKMLKKKMQKRAQLQLIQSLLEVEKEVGKVLD 427
Query: 434 ILGLLPPGAYSEV 446
+LGLL +Y+EV
Sbjct: 428 VLGLLSSKSYAEV 440
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536300|ref|XP_003536677.1| PREDICTED: cysteinyl-tRNA synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/433 (73%), Positives = 369/433 (85%), Gaps = 5/433 (1%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
+IYNSMTQQKE+F V GKV MYVCGVTAYD SHLGHARAAVSFD+L+RYL+HL E+
Sbjct: 8 FRIYNSMTQQKEIFKTKVPGKVSMYVCGVTAYDFSHLGHARAAVSFDILFRYLKHLGYEI 67
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TYVRNFTDVDDKII+RAN+ GE+PL LSNR+C EY DMADLQC P+ +PRVS+H+ +I
Sbjct: 68 TYVRNFTDVDDKIIKRANETGEDPLMLSNRFCDEYNADMADLQCETPSREPRVSEHLNEI 127
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
KDMITQIINN AY V+GDVF+AV+K PNYG LSGQRLE+NRAGERVAVDSRKR+PADFA
Sbjct: 128 KDMITQIINNGYAYEVDGDVFYAVDKCPNYGMLSGQRLEHNRAGERVAVDSRKRHPADFA 187
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWKAAK GEPSWDSPWGPGRPGWHIECSAMSA YL+ KFDIHGGGIDLIFPHHENEIAQS
Sbjct: 188 LWKAAKPGEPSWDSPWGPGRPGWHIECSAMSACYLTHKFDIHGGGIDLIFPHHENEIAQS 247
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
AA DS+VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYH LALRHFLISAHYRSPL
Sbjct: 248 WAADHDSHVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHSLALRHFLISAHYRSPL 307
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPF-----QEHGKTARINPAAEDCINKLRDEF 373
NYS+ QL+++SDA++YI+QTLQDC+ A+SP +++ K +IN AA++CI KL EF
Sbjct: 308 NYSISQLENSSDAIYYIFQTLQDCKDAVSPLLQGETEKNEKVPQINEAAKECIKKLNVEF 367
Query: 374 HARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLR 433
+MSDDL T ILTGA Q+ALKF+N+SL MLKKK K+ QL LI+SL ++E V +VL
Sbjct: 368 QTKMSDDLQTPVILTGALQEALKFVNTSLKMLKKKMQKRAQLQLIQSLLEVEKVVGKVLD 427
Query: 434 ILGLLPPGAYSEV 446
+LGLL +Y+EV
Sbjct: 428 VLGLLSSKSYAEV 440
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444709|ref|XP_003592632.1| Cysteinyl-tRNA synthetase [Medicago truncatula] gi|355481680|gb|AES62883.1| Cysteinyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/435 (72%), Positives = 367/435 (84%), Gaps = 5/435 (1%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ LK+YNSM +KE+F P V GKV MYVCGVTAYDLSHLGHARAAVSFD+L+RYL+HL
Sbjct: 14 VELKLYNSMNNEKEIFNPKVAGKVSMYVCGVTAYDLSHLGHARAAVSFDILFRYLKHLDY 73
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
EVTYVRNFTDVDDKII RAN+ G +P LS +C EY VDM+DL C PT +PRVSDH++
Sbjct: 74 EVTYVRNFTDVDDKIINRANEKGVDPFELSRHFCDEYNVDMSDLLCERPTKEPRVSDHID 133
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
QIKDMITQIINND AY V GDVF++VEK PNYG LSGQRLE+NRAGERVAVDSRK +PAD
Sbjct: 134 QIKDMITQIINNDYAYEVNGDVFYSVEKCPNYGALSGQRLEHNRAGERVAVDSRKHHPAD 193
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWKAAK GEPSWDSPWGPGRPGWHIECSAMSA YLS KFDIHGGGIDLIFPHHENEIA
Sbjct: 194 FALWKAAKPGEPSWDSPWGPGRPGWHIECSAMSACYLSHKFDIHGGGIDLIFPHHENEIA 253
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA ++S++SYW+HNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS
Sbjct: 254 QSWAADKESHISYWLHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 313
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPF-----QEHGKTARINPAAEDCINKLRD 371
PLNYS+ QL+++SDA++YI+QTL+DC LS F ++ K IN AA++CI KL+D
Sbjct: 314 PLNYSITQLETSSDAIYYIFQTLEDCRDTLSSFLQEDTEKKEKVPPINDAAKECIKKLKD 373
Query: 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEV 431
EF +MSDDL T ILTGA Q+ALKF+N SL MLKKK K+ QL L++SL ++E E +E+
Sbjct: 374 EFQTKMSDDLQTPVILTGALQEALKFMNGSLKMLKKKMQKRAQLQLVQSLLEVEKEAREI 433
Query: 432 LRILGLLPPGAYSEV 446
L++LGLL +Y+EV
Sbjct: 434 LKVLGLLSSLSYAEV 448
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241557|ref|NP_198699.1| cysteinyl-tRNA synthetase [Arabidopsis thaliana] gi|192807340|gb|ACF06122.1| At5g38830 [Arabidopsis thaliana] gi|332006981|gb|AED94364.1| cysteinyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 303/441 (68%), Positives = 365/441 (82%), Gaps = 7/441 (1%)
Query: 10 VAAPKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYR 69
+ A KM+L K+YN+MTQQKE+ PI GK+G+YVCG+TAYD SH+GHARAAVSFD+LYR
Sbjct: 1 MEAEKMEL--KLYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSHIGHARAAVSFDVLYR 58
Query: 70 YLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQP 129
YL+HL +VT+VRNFTDVDDKII RAN GE+PL LSNR+C EYLVDM LQCLPPT+QP
Sbjct: 59 YLKHLDYDVTFVRNFTDVDDKIIDRANKNGEDPLDLSNRFCDEYLVDMGALQCLPPTHQP 118
Query: 130 RVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDS 189
RVS+HM+ I MI +II DC YVVEGDVFF+V+KSPNYG+LSGQ LE+ RAGERVAVDS
Sbjct: 119 RVSEHMDNIIKMIEKIIEKDCGYVVEGDVFFSVDKSPNYGKLSGQLLEHTRAGERVAVDS 178
Query: 190 RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP 249
RKRNPADFALWKAAK EPSW+SPWGPGRPGWHIECSAMS HYLS KFDIHGGG DL FP
Sbjct: 179 RKRNPADFALWKAAKPDEPSWESPWGPGRPGWHIECSAMSVHYLSPKFDIHGGGADLKFP 238
Query: 250 HHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFL 309
HHENEIAQ+CAAC+DS V+YW+HNGHVT NNEKM+KS NF TIR+IT YHPLALRHFL
Sbjct: 239 HHENEIAQTCAACEDSGVNYWLHNGHVTINNEKMAKSKHNFKTIREITASYHPLALRHFL 298
Query: 310 ISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ----EHGKTARINPAAEDC 365
+SA YRSPL+++ QL+S+S+A++Y+YQTLQD + LSP+Q E G + +D
Sbjct: 299 MSAQYRSPLSFTASQLESSSEALYYVYQTLQDLDEGLSPYQDALSEDGGKSEQTAEGKDI 358
Query: 366 INKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIE 425
I KL+ EF ++M DDLNT+HILTGA+QDALKFIN+SL+ LKK Q K+Q++S++ SL +IE
Sbjct: 359 IKKLKTEFESKMLDDLNTAHILTGAYQDALKFINASLSKLKKMQ-KKQRMSMLVSLVEIE 417
Query: 426 NEVKEVLRILGLLPPGAYSEV 446
+EVL +LGLL +Y+E+
Sbjct: 418 KAAREVLDVLGLLTTLSYAEI 438
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297801734|ref|XP_002868751.1| tRNA synthetase class I (C) family protein [Arabidopsis lyrata subsp. lyrata] gi|297314587|gb|EFH45010.1| tRNA synthetase class I (C) family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 305/441 (69%), Positives = 366/441 (82%), Gaps = 7/441 (1%)
Query: 10 VAAPKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYR 69
+ A KM+L K+YN+MTQQKE+ PI GK+G+YVCG+TAYD SH+GHARAAVSFD+LYR
Sbjct: 1 MEAEKMEL--KLYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSHIGHARAAVSFDVLYR 58
Query: 70 YLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQP 129
YL+HL EV +VRNFTDVDDKII RAN+ GE+PL LSNR+C+EYLVDM LQCL PT+QP
Sbjct: 59 YLKHLGYEVNFVRNFTDVDDKIIIRANENGEDPLDLSNRFCEEYLVDMGALQCLLPTHQP 118
Query: 130 RVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDS 189
RVS+HM+ I MI +II DC YVVEGDVFF+V+KSPNYG+LSGQ LE+ RAGERVAVDS
Sbjct: 119 RVSEHMDHIIKMIEKIIEKDCGYVVEGDVFFSVDKSPNYGKLSGQLLEHTRAGERVAVDS 178
Query: 190 RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP 249
RKRNPADFALWKAAK EPSW+SPWGPGRPGWHIECSAMSAHYLS KFDIHGGG DL FP
Sbjct: 179 RKRNPADFALWKAAKPEEPSWESPWGPGRPGWHIECSAMSAHYLSPKFDIHGGGADLKFP 238
Query: 250 HHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFL 309
HHENEIAQ+CAAC+DS V+YW+HNGHVT NNEKM+KS NF TIR+IT YHPLALRHFL
Sbjct: 239 HHENEIAQTCAACEDSGVNYWLHNGHVTINNEKMAKSKKNFKTIREITASYHPLALRHFL 298
Query: 310 ISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ----EHGKTARINPAAEDC 365
+SA YRSPL++S QL+S+SDA++Y+YQTLQD + LSP++ E G A P +D
Sbjct: 299 MSAQYRSPLSFSASQLESSSDALYYVYQTLQDLDEDLSPYREALSEDGGKAEQTPEGKDI 358
Query: 366 INKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIE 425
I KL+ EF ++M DDLNT+HILTGA+QDALKFIN++ + LKK Q K+Q++S++ SL +IE
Sbjct: 359 IKKLKSEFESKMLDDLNTAHILTGAYQDALKFINANRSKLKKMQ-KKQRMSMLVSLVEIE 417
Query: 426 NEVKEVLRILGLLPPGAYSEV 446
+EVL +LGLL +Y+EV
Sbjct: 418 KAAREVLDVLGLLTTLSYAEV 438
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | ||||||
| TAIR|locus:2152237 | 511 | AT5G38830 "AT5G38830" [Arabido | 0.931 | 0.845 | 0.678 | 1.9e-163 | |
| UNIPROTKB|Q0IZQ2 | 569 | Os09g0556500 "Os09g0556500 pro | 0.939 | 0.766 | 0.604 | 5.3e-143 | |
| TAIR|locus:2042521 | 563 | SYCO ARATH "cysteinyl t-RNA sy | 0.909 | 0.749 | 0.614 | 7e-141 | |
| TAIR|locus:2078406 | 489 | AT3G56300 "AT3G56300" [Arabido | 0.650 | 0.617 | 0.721 | 1.4e-131 | |
| UNIPROTKB|Q7G2N5 | 491 | LOC_Os10g32570 "tRNA synthetas | 0.547 | 0.517 | 0.641 | 1.9e-110 | |
| UNIPROTKB|A8JCV0 | 637 | CHLREDRAFT_153062 "Cysteinyl-t | 0.558 | 0.406 | 0.571 | 1.2e-104 | |
| TIGR_CMR|SO_1791 | 459 | SO_1791 "cysteinyl-tRNA synthe | 0.747 | 0.755 | 0.531 | 1.4e-96 | |
| UNIPROTKB|Q747A2 | 481 | cysS "Cysteine--tRNA ligase" [ | 0.900 | 0.869 | 0.467 | 3.7e-96 | |
| TIGR_CMR|GSU_3365 | 481 | GSU_3365 "cysteinyl-tRNA synth | 0.900 | 0.869 | 0.467 | 3.7e-96 | |
| TIGR_CMR|CHY_2338 | 465 | CHY_2338 "cysteinyl-tRNA synth | 0.812 | 0.810 | 0.497 | 4.7e-96 |
| TAIR|locus:2152237 AT5G38830 "AT5G38830" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1591 (565.1 bits), Expect = 1.9e-163, P = 1.9e-163
Identities = 298/439 (67%), Positives = 357/439 (81%)
Query: 12 APKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYL 71
A KM+L K+YN+MTQQKE+ PI GK+G+YVCG+TAYD SH+GHARAAVSFD+LYRYL
Sbjct: 3 AEKMEL--KLYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSHIGHARAAVSFDVLYRYL 60
Query: 72 EHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRV 131
+HL +VT+VRNFTDVDDKII RAN GE+PL LSNR+C EYLVDM LQCLPPT+QPRV
Sbjct: 61 KHLDYDVTFVRNFTDVDDKIIDRANKNGEDPLDLSNRFCDEYLVDMGALQCLPPTHQPRV 120
Query: 132 SDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRK 191
S+HM+ I MI +II DC YVVEGDVFF+V+KSPNYG+LSGQ LE+ RAGERVAVDSRK
Sbjct: 121 SEHMDNIIKMIEKIIEKDCGYVVEGDVFFSVDKSPNYGKLSGQLLEHTRAGERVAVDSRK 180
Query: 192 RNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHH 251
RNPADFALWKAAK EPSW+SPWGPGRPGWHIECSAMS HYLS KFDIHGGG DL FPHH
Sbjct: 181 RNPADFALWKAAKPDEPSWESPWGPGRPGWHIECSAMSVHYLSPKFDIHGGGADLKFPHH 240
Query: 252 ENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311
ENEIAQ+CAAC+DS V+YW+HNGHVT NNEKM+KS NF TIR+IT YHPLALRHFL+S
Sbjct: 241 ENEIAQTCAACEDSGVNYWLHNGHVTINNEKMAKSKHNFKTIREITASYHPLALRHFLMS 300
Query: 312 AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ----EHGKTARINPAAEDCIN 367
A YRSPL+++ QL+S+S+A++Y+YQTLQD + LSP+Q E G + +D I
Sbjct: 301 AQYRSPLSFTASQLESSSEALYYVYQTLQDLDEGLSPYQDALSEDGGKSEQTAEGKDIIK 360
Query: 368 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLXXXXXXXXXLSLIESLRKIENE 427
KL+ EF ++M DDLNT+HILTGA+QDALKFIN+SL+ L +S++ SL +IE
Sbjct: 361 KLKTEFESKMLDDLNTAHILTGAYQDALKFINASLSKLKKMQKKQR-MSMLVSLVEIEKA 419
Query: 428 VKEVLRILGLLPPGAYSEV 446
+EVL +LGLL +Y+E+
Sbjct: 420 AREVLDVLGLLTTLSYAEI 438
|
|
| UNIPROTKB|Q0IZQ2 Os09g0556500 "Os09g0556500 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1398 (497.2 bits), Expect = 5.3e-143, P = 5.3e-143
Identities = 270/447 (60%), Positives = 331/447 (74%)
Query: 3 ASKETGTVAAPKMDLTLKIYNSMTQQKELFTPIVRG-KVGMYVCGVTAYDLSHLGHARAA 61
AS G A +L L YN+ +++KELF P V G +VGMYVCGVT YD SH+GHARA
Sbjct: 58 ASASNGAPAGRARELHL--YNTKSRRKELFQPRVPGGEVGMYVCGVTPYDDSHIGHARAY 115
Query: 62 VSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121
V+FD+LYRYL +L +V YVRNFTD+DDKII RAN LGE+P SLS RY ++L DMA+L
Sbjct: 116 VAFDVLYRYLRYLDHKVRYVRNFTDIDDKIIARANQLGEDPFSLSKRYSDDFLSDMANLH 175
Query: 122 CLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRA 181
CLPP+ +PRVSDH++QI +MI QII+NDCAY + GDV+F+VE P YG LSG++L++NRA
Sbjct: 176 CLPPSVEPRVSDHIDQIINMIKQIIDNDCAYAIGGDVYFSVENFPEYGDLSGRKLDDNRA 235
Query: 182 GERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHG 241
GERVAVD RK+NPADFALWKAAK GEPSWDSPWGPGRPGWHIECSAMSAHYL FDIHG
Sbjct: 236 GERVAVDERKKNPADFALWKAAKDGEPSWDSPWGPGRPGWHIECSAMSAHYLGHSFDIHG 295
Query: 242 GGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYH 301
GG DLIFPHHENEIAQS AAC DS+++YW+HNG V N++KMSKSLGNF TIR++TE YH
Sbjct: 296 GGEDLIFPHHENEIAQSRAACCDSSINYWIHNGFVNVNSQKMSKSLGNFVTIRKVTELYH 355
Query: 302 PLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH-GKTARINP 360
PLALR FL+ HYRSP+NY++ QL+ ASD ++Y YQTLQDCE + Q G +N
Sbjct: 356 PLALRMFLLGTHYRSPINYTIEQLNVASDRLYYTYQTLQDCEESCQQHQSKAGDPLPVNT 415
Query: 361 AAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLXXXXXXXXXLSLIES 420
+CI KL DEF MSDDL+TS + A + LK +N L+ +ES
Sbjct: 416 T--NCIQKLHDEFETSMSDDLHTS-VALAAISEPLKVMNDLLHTRKGKKQEKR----LES 468
Query: 421 LRKIENEVKEVLRILGLLPPGAYSEVK 447
L +E +++ VL +LGLLP Y ++
Sbjct: 469 LSAMEEKIRMVLSVLGLLPSSYYEALQ 495
|
|
| TAIR|locus:2042521 SYCO ARATH "cysteinyl t-RNA synthetase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1378 (490.1 bits), Expect = 7.0e-141, P = 7.0e-141
Identities = 263/428 (61%), Positives = 324/428 (75%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
L ++N+M+++KELF P V GKVGMYVCGVTAYDLSH+GHAR V+FD+L RYL+HL EV
Sbjct: 65 LWLHNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLLRYLKHLGYEV 124
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+YVRNFTDVDDKII RA +L E+P+SLS R+C+E+ DM LQCL P+ QPRVSDH+ QI
Sbjct: 125 SYVRNFTDVDDKIIARAKELEEDPISLSRRFCEEFNRDMEQLQCLDPSVQPRVSDHIPQI 184
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
D+I QI++N AY V+GD++F+V+K P YG+LSG++LE+NRAGERVAVD+RK++PADFA
Sbjct: 185 IDLIKQILDNGYAYKVDGDIYFSVDKFPTYGKLSGRKLEDNRAGERVAVDTRKKHPADFA 244
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWKAAK GEP W+SPWG GRPGWHIECSAMSA YL FDIHGGG+DL+FPHHENEIAQS
Sbjct: 245 LWKAAKEGEPFWESPWGRGRPGWHIECSAMSAAYLGYSFDIHGGGMDLVFPHHENEIAQS 304
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
CAAC SN+SYW+HNG VT ++EKMSKSLGNFFTIRQ+ + YHPLALR FL+ HYRSP+
Sbjct: 305 CAACDSSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLMGTHYRSPI 364
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMS 378
NYS L+SAS+ +FYIYQTL DCE AL + + IN R EF A MS
Sbjct: 365 NYSDFLLESASERIFYIYQTLHDCESALGEKDSTFENGSVPSDTLTSINTFRTEFVASMS 424
Query: 379 DDLNTSHILTGAFQDALKFINSSLNMLXXXXXXXXXLSLIESLRKIENEVKEVLRILGLL 438
DDL T + A + LK IN ++ ESL+ +E +++VL ILGL+
Sbjct: 425 DDLLTP-VTLAAMSEPLKTINDLIHTRKGKKQARRE----ESLKALETTIRDVLTILGLM 479
Query: 439 PPGAYSEV 446
P +YSEV
Sbjct: 480 PT-SYSEV 486
|
|
| TAIR|locus:2078406 AT3G56300 "AT3G56300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1219 (434.2 bits), Expect = 1.4e-131, Sum P(2) = 1.4e-131
Identities = 231/320 (72%), Positives = 265/320 (82%)
Query: 14 KMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEH 73
K DLTL YN+MTQ KE++ P+ GK+G+YVCG+TAYD SH+GHARAAVSFDLLYRYL H
Sbjct: 8 KPDLTL--YNTMTQLKEVYKPMNPGKIGIYVCGITAYDYSHIGHARAAVSFDLLYRYLRH 65
Query: 74 LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSD 133
L +VTYVRNFTDVDDK A + GE PL LSNR+C+EYL+DMA LQCL PT+QPRVSD
Sbjct: 66 LGYQVTYVRNFTDVDDK----AKNCGEKPLDLSNRFCEEYLLDMAALQCLLPTHQPRVSD 121
Query: 134 HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRN 193
HMEQI MI +II N C Y V GDVFF+V+KSP+YG+LSGQRL++ +AG+RVAVDSRKRN
Sbjct: 122 HMEQIIKMIEKIIENGCGYAVGGDVFFSVDKSPSYGQLSGQRLDHTQAGKRVAVDSRKRN 181
Query: 194 PADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHEN 253
PADFAL KAAK+GEPSW+SPWG GRPGWHIE FDIHGGG DL FPHHEN
Sbjct: 182 PADFALRKAAKSGEPSWESPWGHGRPGWHIE------------FDIHGGGADLKFPHHEN 229
Query: 254 EIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAH 313
EIAQ+CAAC+DS V+YW+HNGHVTNNN KM KSL NFFTIRQI YHPLALRHFL+SA
Sbjct: 230 EIAQTCAACEDSGVNYWLHNGHVTNNNVKMGKSLNNFFTIRQIAANYHPLALRHFLMSAQ 289
Query: 314 YRSPLNYSVLQLDSASDAVF 333
YRSPLNYSV QL+S+SDA++
Sbjct: 290 YRSPLNYSVSQLESSSDALY 309
|
|
| UNIPROTKB|Q7G2N5 LOC_Os10g32570 "tRNA synthetase class I family protein, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 901 (322.2 bits), Expect = 1.9e-110, Sum P(2) = 1.9e-110
Identities = 163/254 (64%), Positives = 207/254 (81%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
L+++++ T+ F P V GKV MYVCGVT YD SH+GHARA V+FD+L+RYL++L EV
Sbjct: 22 LRLFDTRTKAAVPFRPRVEGKVAMYVCGVTPYDYSHVGHARAYVAFDVLFRYLKYLGYEV 81
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YVRNFTD+DDKII+RAN+ GE+ LSLS+R+ E+ DM +LQCLPPT++PRV+ H+EQI
Sbjct: 82 NYVRNFTDIDDKIIKRANEAGEDALSLSSRFIDEFHRDMYELQCLPPTHEPRVTKHIEQI 141
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
D+IT+I++N AY +EGDV+F+V+ P+Y LSG++++ NR G RVAVD+RKRNPADFA
Sbjct: 142 IDLITKIMDNGKAYTIEGDVYFSVDNFPDYLSLSGRKVDQNRPGTRVAVDARKRNPADFA 201
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWK+AK GEPSW+SPWG GRPGWHIECSAMSAHYL + FDIHGGG DLIFPHHENE+AQS
Sbjct: 202 LWKSAKEGEPSWESPWGRGRPGWHIECSAMSAHYLGNIFDIHGGGKDLIFPHHENELAQS 261
Query: 259 CAACQDSNVSYWMH 272
AA +S + H
Sbjct: 262 QAAYPESEIISLYH 275
|
|
| UNIPROTKB|A8JCV0 CHLREDRAFT_153062 "Cysteinyl-tRNA synthetase" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
|---|
Score = 769 (275.8 bits), Expect = 1.2e-104, Sum P(3) = 1.2e-104
Identities = 152/266 (57%), Positives = 185/266 (69%)
Query: 3 ASKETGTVAAPKMDLTLKIYNSMTQQKELFTP-IVRGKVGMYVCGVTAYDLSHLGHARAA 61
A + V+ ++ + +N+M++ KELF P + G V MYVCGVT YD SH+GHAR
Sbjct: 20 AGAASSGVSQAELRERVTFFNTMSKSKELFRPRLSDGSVSMYVCGVTVYDYSHIGHARVY 79
Query: 62 VSFDLLYRYLEHLKC--EVTYVRNFTDVDDKIIRRANDL--GENPLSLSNRYCQEYLVDM 117
V+FD+LYR+L C +VTYVRNFTD+DDKII RA G L+ R+ E+ DM
Sbjct: 80 VAFDVLYRFLS-AACGYKVTYVRNFTDIDDKIIARAQQARSGVETSELTERFIDEFNKDM 138
Query: 118 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG-DVFFAVEKSPNYGRLSGQRL 176
A L LPP +PR + + Q+ IT II N AY V+G DVFF V P YGRLSG++
Sbjct: 139 AALNVLPPALEPRATAFVPQMISTITDIIANGHAYAVDGGDVFFDVASLPGYGRLSGRQQ 198
Query: 177 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 236
E+NRAGERVAVDSRKR+PADFALWKAAK GEP+W SPWGPGRPGWHIECS+M +
Sbjct: 199 EDNRAGERVAVDSRKRSPADFALWKAAKPGEPAWPSPWGPGRPGWHIECSSMIRELMGPV 258
Query: 237 FDIHGGGIDLIFPHHENEIAQSCAAC 262
DIHGGG DL+FPHHENE+AQS AAC
Sbjct: 259 IDIHGGGRDLVFPHHENELAQSQAAC 284
|
|
| TIGR_CMR|SO_1791 SO_1791 "cysteinyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
Identities = 187/352 (53%), Positives = 237/352 (67%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI GKVGMYVCGVT YDL H+GH R VSFD++ RYL + EV
Sbjct: 2 LKIYNSITRQKQEFKPINPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TD+DDKII+RAN+ E+ +L++R E D L P ++PR + H+ +I
Sbjct: 62 NFQRNITDIDDKIIKRANENQEDCNTLTDRLIGEMHKDFDALNMKRPDFEPRATLHIAEI 121
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ +++ AYV +GDV F+V P YGRLSGQ LE +AG RV VD K+NP DF
Sbjct: 122 IDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDDNKQNPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 242 SCCAHDTPYVNYWMHTGMVMIDREKMSKSLGNFFTIRDVLSHYDAETVRYFLLSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCE--VALSPFQEHGKTARINPAAEDCIN 367
+NYS L A A+ +Y ++D + VA +P +E A+ A +D N
Sbjct: 302 INYSEENLKQARAALERLYTAIKDVDLTVAAAPAEEF--VAKFKAAMDDDFN 351
|
|
| UNIPROTKB|Q747A2 cysS "Cysteine--tRNA ligase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
Identities = 201/430 (46%), Positives = 265/430 (61%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L++YN+++ KE F + G+V MYVCGVT YD H+GHARA V FD++YRYL H
Sbjct: 1 MALRVYNTLSGTKEDFVTLEPGRVKMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLS-LSNRYCQEYLVDMADLQCLPPTYQPRVSDHM 135
EVTYVRN+TDVDDKII RAN G P + +S R+ E+ DMA L PTYQP+ ++H+
Sbjct: 61 EVTYVRNYTDVDDKIINRANKEGV-PFNVISERFIAEFDRDMAALGLDLPTYQPKATEHI 119
Query: 136 EQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 195
++ +I +++ AY +GDV+F+VE Y +LS + LE +AG R+ V +KR+P
Sbjct: 120 AEMIQVIERLVAKGFAYAADGDVYFSVEAFDQYLKLSKRNLEEMQAGARIEVGEKKRHPM 179
Query: 196 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255
DFALWK +K GEP WDSPWG GRPGWHIECSAMS YL FDIHGGG DL+FPHHENEI
Sbjct: 180 DFALWKGSKPGEPYWDSPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEI 239
Query: 256 AQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYR 315
AQS AA YW+HNG V N EKMSKSLGNFFTI+++ E Y LR FL+SAHYR
Sbjct: 240 AQSEAANGKPFARYWIHNGFVNINAEKMSKSLGNFFTIKEVLESYDAEVLRFFLLSAHYR 299
Query: 316 SPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHA 375
SP+++S L A+ + IY L + A++ + RI+ + L F
Sbjct: 300 SPIDFSDQNLKEAAAGLERIYNALAGIDEAVAA--DGTGAGRIDEELAEKAAGLPTRFRE 357
Query: 376 RMSDDLNTSHILTGAFQDALKFINSSLNMLXXXXXXXXXLSLIESLRKIENEVKEVLRIL 435
M DD NT+ L F D ++ +N L +++ S R+ + V VL +
Sbjct: 358 AMDDDFNTAQALGYVF-DLVRAVNRVL------AEGEIDRAVLASAREAIDRVGAVLGLF 410
Query: 436 GLLPPGAYSE 445
PGA+ E
Sbjct: 411 -TSEPGAFVE 419
|
|
| TIGR_CMR|GSU_3365 GSU_3365 "cysteinyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
Identities = 201/430 (46%), Positives = 265/430 (61%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L++YN+++ KE F + G+V MYVCGVT YD H+GHARA V FD++YRYL H
Sbjct: 1 MALRVYNTLSGTKEDFVTLEPGRVKMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLS-LSNRYCQEYLVDMADLQCLPPTYQPRVSDHM 135
EVTYVRN+TDVDDKII RAN G P + +S R+ E+ DMA L PTYQP+ ++H+
Sbjct: 61 EVTYVRNYTDVDDKIINRANKEGV-PFNVISERFIAEFDRDMAALGLDLPTYQPKATEHI 119
Query: 136 EQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 195
++ +I +++ AY +GDV+F+VE Y +LS + LE +AG R+ V +KR+P
Sbjct: 120 AEMIQVIERLVAKGFAYAADGDVYFSVEAFDQYLKLSKRNLEEMQAGARIEVGEKKRHPM 179
Query: 196 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255
DFALWK +K GEP WDSPWG GRPGWHIECSAMS YL FDIHGGG DL+FPHHENEI
Sbjct: 180 DFALWKGSKPGEPYWDSPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEI 239
Query: 256 AQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYR 315
AQS AA YW+HNG V N EKMSKSLGNFFTI+++ E Y LR FL+SAHYR
Sbjct: 240 AQSEAANGKPFARYWIHNGFVNINAEKMSKSLGNFFTIKEVLESYDAEVLRFFLLSAHYR 299
Query: 316 SPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHA 375
SP+++S L A+ + IY L + A++ + RI+ + L F
Sbjct: 300 SPIDFSDQNLKEAAAGLERIYNALAGIDEAVAA--DGTGAGRIDEELAEKAAGLPTRFRE 357
Query: 376 RMSDDLNTSHILTGAFQDALKFINSSLNMLXXXXXXXXXLSLIESLRKIENEVKEVLRIL 435
M DD NT+ L F D ++ +N L +++ S R+ + V VL +
Sbjct: 358 AMDDDFNTAQALGYVF-DLVRAVNRVL------AEGEIDRAVLASAREAIDRVGAVLGLF 410
Query: 436 GLLPPGAYSE 445
PGA+ E
Sbjct: 411 -TSEPGAFVE 419
|
|
| TIGR_CMR|CHY_2338 CHY_2338 "cysteinyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
Identities = 191/384 (49%), Positives = 253/384 (65%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
+KIYN++T+ KE F P GKV MYVCG T Y+ H+G+AR V FD + RY E+ EV
Sbjct: 1 MKIYNTLTKTKEEFIPREPGKVYMYVCGPTTYNYIHIGNARPIVFFDTVRRYFEYKGFEV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YV+NFTD+DDKII RA + G +P+ L +Y EY D L T P+V++H+ +I
Sbjct: 61 IYVQNFTDIDDKIINRALEEGISPIELGQKYIIEYFKDADRLGVKRATVHPKVTEHIPEI 120
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
+M+ +I AY VEG+V+FAV+ +YG+LSG+ LE +AG RV VD +K+NP DFA
Sbjct: 121 IEMVKGLIEKGYAYEVEGNVYFAVDSFSDYGKLSGRDLEELKAGARVEVDEKKKNPLDFA 180
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWK AK GEP W+SPWGPGRPGWHIECSAMS YL FDIHGGG DL+FPHHENE+AQS
Sbjct: 181 LWKKAKPGEPYWESPWGPGRPGWHIECSAMSLKYLGENFDIHGGGADLVFPHHENEVAQS 240
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
A YWMHNG +T N EKMSKSLGNFF +R+I E++ +R FL+S HYRSPL
Sbjct: 241 EAFTGKPFARYWMHNGFITVNQEKMSKSLGNFFLVREILEKFPGRVVRFFLLSTHYRSPL 300
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMS 378
++ +L+ A A+ + +Q+ + ++P G+ ARI E N LRD F+ M
Sbjct: 301 DFDDKKLNEAKAALERVDNFVQNLK-EVNPLP--GE-ARIE-IQEKITNFLRD-FNEAME 354
Query: 379 DDLNTSHILTGAFQDALKFINSSL 402
DD NT+ + F+ ++F N+ +
Sbjct: 355 DDFNTAQAMASLFE-LVRFGNTQI 377
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6AJ23 | SYC_DESPS | 6, ., 1, ., 1, ., 1, 6 | 0.4473 | 0.8836 | 0.8384 | yes | no |
| B6YUQ3 | SYC_THEON | 6, ., 1, ., 1, ., 1, 6 | 0.4492 | 0.8771 | 0.8550 | yes | no |
| Q0AJJ4 | SYC_NITEC | 6, ., 1, ., 1, ., 1, 6 | 0.5586 | 0.6961 | 0.6916 | yes | no |
| B9MMM6 | SYC_CALBD | 6, ., 1, ., 1, ., 1, 6 | 0.4595 | 0.8728 | 0.8709 | yes | no |
| Q9UYV2 | SYC_PYRAB | 6, ., 1, ., 1, ., 1, 6 | 0.4516 | 0.8771 | 0.8532 | yes | no |
| Q82Y45 | SYC_NITEU | 6, ., 1, ., 1, ., 1, 6 | 0.5157 | 0.7758 | 0.7741 | yes | no |
| Q72BQ5 | SYC_DESVH | 6, ., 1, ., 1, ., 1, 6 | 0.4640 | 0.9137 | 0.8742 | yes | no |
| A9KWH4 | SYC_SHEB9 | 6, ., 1, ., 1, ., 1, 6 | 0.4869 | 0.8405 | 0.8496 | yes | no |
| Q5JD45 | SYC_PYRKO | 6, ., 1, ., 1, ., 1, 6 | 0.4684 | 0.8814 | 0.8592 | yes | no |
| B9LZV4 | SYC_GEOSF | 6, ., 1, ., 1, ., 1, 6 | 0.4704 | 0.9073 | 0.8522 | yes | no |
| Q8U227 | SYC_PYRFU | 6, ., 1, ., 1, ., 1, 6 | 0.4731 | 0.8771 | 0.8532 | yes | no |
| A4XHE2 | SYC_CALS8 | 6, ., 1, ., 1, ., 1, 6 | 0.4595 | 0.8728 | 0.8709 | yes | no |
| A5G949 | SYC_GEOUR | 6, ., 1, ., 1, ., 1, 6 | 0.4685 | 0.8965 | 0.8421 | yes | no |
| C5A739 | SYC_THEGJ | 6, ., 1, ., 1, ., 1, 6 | 0.4644 | 0.8900 | 0.8676 | yes | no |
| Q747A2 | SYC_GEOSL | 6, ., 1, ., 1, ., 1, 6 | 0.4663 | 0.8987 | 0.8669 | yes | no |
| Q39ZL8 | SYC_GEOMG | 6, ., 1, ., 1, ., 1, 6 | 0.4663 | 0.9073 | 0.8680 | yes | no |
| Q3A8C9 | SYC_PELCD | 6, ., 1, ., 1, ., 1, 6 | 0.5051 | 0.7931 | 0.7650 | yes | no |
| O58370 | SYC_PYRHO | 6, ., 1, ., 1, ., 1, 6 | 0.4575 | 0.8857 | 0.8634 | yes | no |
| Q8EG22 | SYC_SHEON | 6, ., 1, ., 1, ., 1, 6 | 0.4775 | 0.8405 | 0.8496 | yes | no |
| B8CRG0 | SYC_SHEPW | 6, ., 1, ., 1, ., 1, 6 | 0.4687 | 0.8685 | 0.8779 | yes | no |
| A4Y5H9 | SYC_SHEPC | 6, ., 1, ., 1, ., 1, 6 | 0.4786 | 0.8534 | 0.8590 | yes | no |
| Q0HH98 | SYC_SHESM | 6, ., 1, ., 1, ., 1, 6 | 0.5104 | 0.7866 | 0.7917 | yes | no |
| A6WLP8 | SYC_SHEB8 | 6, ., 1, ., 1, ., 1, 6 | 0.4798 | 0.8448 | 0.8540 | yes | no |
| Q3J8Y9 | SYC_NITOC | 6, ., 1, ., 1, ., 1, 6 | 0.4988 | 0.8706 | 0.8329 | yes | no |
| B0TC35 | SYC_HELMI | 6, ., 1, ., 1, ., 1, 6 | 0.4660 | 0.8879 | 0.8565 | yes | no |
| Q3A9P1 | SYC_CARHZ | 6, ., 1, ., 1, ., 1, 6 | 0.4987 | 0.8103 | 0.8086 | yes | no |
| B8GNT5 | SYC_THISH | 6, ., 1, ., 1, ., 1, 6 | 0.5190 | 0.8017 | 0.8086 | yes | no |
| Q60BG8 | SYC_METCA | 6, ., 1, ., 1, ., 1, 6 | 0.5314 | 0.7952 | 0.7935 | yes | no |
| A3D302 | SYC_SHEB5 | 6, ., 1, ., 1, ., 1, 6 | 0.4703 | 0.8620 | 0.8714 | yes | no |
| Q5QYP3 | SYC_IDILO | 6, ., 1, ., 1, ., 1, 6 | 0.4657 | 0.8512 | 0.8605 | yes | no |
| A1AK01 | SYC_PELPD | 6, ., 1, ., 1, ., 1, 6 | 0.4954 | 0.9245 | 0.8701 | yes | no |
| Q0HTK4 | SYC_SHESR | 6, ., 1, ., 1, ., 1, 6 | 0.5104 | 0.7866 | 0.7917 | yes | no |
| A1S4X2 | SYC_SHEAM | 6, ., 1, ., 1, ., 1, 6 | 0.4810 | 0.8534 | 0.8627 | yes | no |
| Q31H54 | SYC_THICR | 6, ., 1, ., 1, ., 1, 6 | 0.4711 | 0.8577 | 0.8728 | yes | no |
| A1RL92 | SYC_SHESW | 6, ., 1, ., 1, ., 1, 6 | 0.4786 | 0.8534 | 0.8590 | yes | no |
| B0TLV2 | SYC_SHEHH | 6, ., 1, ., 1, ., 1, 6 | 0.4821 | 0.8426 | 0.8518 | yes | no |
| A1VDQ5 | SYC_DESVV | 6, ., 1, ., 1, ., 1, 6 | 0.4585 | 0.9073 | 0.8680 | yes | no |
| C6E7P0 | SYC_GEOSM | 6, ., 1, ., 1, ., 1, 6 | 0.4750 | 0.8793 | 0.85 | yes | no |
| B8E5F2 | SYC_SHEB2 | 6, ., 1, ., 1, ., 1, 6 | 0.4798 | 0.8448 | 0.8540 | yes | no |
| A0LIR9 | SYC_SYNFM | 6, ., 1, ., 1, ., 1, 6 | 0.4824 | 0.8987 | 0.8458 | yes | no |
| Q1H417 | SYC_METFK | 6, ., 1, ., 1, ., 1, 6 | 0.5626 | 0.7025 | 0.7164 | yes | no |
| B3E1P0 | SYC_GEOLS | 6, ., 1, ., 1, ., 1, 6 | 0.4894 | 0.8965 | 0.8542 | yes | no |
| A0KYM2 | SYC_SHESA | 6, ., 1, ., 1, ., 1, 6 | 0.5052 | 0.7866 | 0.7917 | yes | no |
| A4J0Y9 | SYC_DESRM | 6, ., 1, ., 1, ., 1, 6 | 0.4738 | 0.8943 | 0.8539 | yes | no |
| Q2SK40 | SYC_HAHCH | 6, ., 1, ., 1, ., 1, 6 | 0.4821 | 0.8556 | 0.8501 | yes | no |
| A3QFX9 | SYC_SHELP | 6, ., 1, ., 1, ., 1, 6 | 0.4671 | 0.8814 | 0.8910 | yes | no |
| Q0A7N3 | SYC_ALHEH | 6, ., 1, ., 1, ., 1, 6 | 0.5306 | 0.7758 | 0.7792 | yes | no |
| A5D5M0 | SYC_PELTS | 6, ., 1, ., 1, ., 1, 6 | 0.4916 | 0.8879 | 0.8512 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 6.1.1.16 | 0.914 |
| 3rd Layer | 6.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00013689001 | SubName- Full=Chromosome undetermined scaffold_528, whole genome shotgun sequence; (513 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00036298001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (566 aa) | • | • | 0.882 | ||||||
 | GSVIVG00022843001 | SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (447 aa) | • | • | • | 0.853 | |||||
 | GSVIVG00006883001 | SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (927 aa) | • | 0.780 | |||||||
 | GSVIVG00002540001 | RecName- Full=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; EC=4.6.1.12; (183 aa) | • | • | 0.730 | ||||||
 | GSVIVG00028238001 | SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (516 aa) | • | • | 0.713 | ||||||
 | GSVIVG00037704001 | SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (529 aa) | • | • | 0.707 | ||||||
 | GSVIVG00016648001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (505 aa) | • | • | 0.706 | ||||||
 | GSVIVG00035363001 | SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (238 aa) | • | • | 0.703 | ||||||
 | GSVIVG00002216001 | SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (485 aa) | • | 0.668 | |||||||
 | GSVIVG00000425001 | SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (370 aa) | • | • | 0.636 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 464 | |||
| PLN02946 | 557 | PLN02946, PLN02946, cysteine-tRNA ligase | 0.0 | |
| PRK00260 | 463 | PRK00260, cysS, cysteinyl-tRNA synthetase; Validat | 0.0 | |
| COG0215 | 464 | COG0215, CysS, Cysteinyl-tRNA synthetase [Translat | 0.0 | |
| TIGR00435 | 464 | TIGR00435, cysS, cysteinyl-tRNA synthetase | 1e-169 | |
| pfam01406 | 301 | pfam01406, tRNA-synt_1e, tRNA synthetases class I | 1e-155 | |
| PTZ00399 | 651 | PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro | 1e-121 | |
| PRK14535 | 699 | PRK14535, cysS, cysteinyl-tRNA synthetase; Provisi | 1e-119 | |
| PRK14536 | 490 | PRK14536, cysS, cysteinyl-tRNA synthetase; Provisi | 5e-96 | |
| TIGR03447 | 411 | TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosi | 7e-88 | |
| PRK12418 | 384 | PRK12418, PRK12418, cysteinyl-tRNA synthetase; Pro | 2e-83 | |
| cd00672 | 213 | cd00672, CysRS_core, catalytic core domain of cyst | 6e-59 | |
| PRK14534 | 481 | PRK14534, cysS, cysteinyl-tRNA synthetase; Provisi | 1e-57 | |
| cd00672 | 213 | cd00672, CysRS_core, catalytic core domain of cyst | 9e-51 | |
| cd00802 | 143 | cd00802, class_I_aaRS_core, catalytic core domain | 4e-11 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 4e-07 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 9e-07 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 2e-06 | |
| PLN02959 | 1084 | PLN02959, PLN02959, aminoacyl-tRNA ligase | 4e-06 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 7e-06 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 2e-05 | |
| cd00802 | 143 | cd00802, class_I_aaRS_core, catalytic core domain | 4e-05 | |
| TIGR00395 | 938 | TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch | 2e-04 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 4e-04 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 6e-04 | |
| PRK11893 | 511 | PRK11893, PRK11893, methionyl-tRNA synthetase; Rev | 0.002 | |
| TIGR00398 | 530 | TIGR00398, metG, methionyl-tRNA synthetase | 0.002 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Rev | 0.003 | |
| PRK00750 | 510 | PRK00750, lysK, lysyl-tRNA synthetase; Reviewed | 0.003 |
| >gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase | Back alignment and domain information |
|---|
Score = 678 bits (1751), Expect = 0.0
Identities = 287/445 (64%), Positives = 348/445 (78%), Gaps = 10/445 (2%)
Query: 3 ASKETGTVAAPKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAV 62
A G A+ +L L YN+M+++KELF P V GKVGMYVCGVTAYDLSH+GHAR V
Sbjct: 46 ALASNGAPASRGRELHL--YNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYV 103
Query: 63 SFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQC 122
+FD+LYRYL+HL EV YVRNFTDVDDKII RAN+LGE+P+SLS RYC+E+L DMA L C
Sbjct: 104 TFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHC 163
Query: 123 LPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAG 182
LPP+ +PRVSDH+ QI DMI QI++N CAY V+GDV+F+V+K P YG+LSG++LE+NRAG
Sbjct: 164 LPPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAG 223
Query: 183 ERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 242
ERVAVDSRK+NPADFALWKAAK GEP WDSPWGPGRPGWHIECSAMSA YL FDIHGG
Sbjct: 224 ERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGG 283
Query: 243 GIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHP 302
G+DL+FPHHENEIAQSCAAC DSN+SYW+HNG VT ++EKMSKSLGNFFTIRQ+ + YHP
Sbjct: 284 GMDLVFPHHENEIAQSCAACCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHP 343
Query: 303 LALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAA 362
LALR FL+ HYRSP+NYS +QL+SAS+ +FYIYQTL DCE +L + + P
Sbjct: 344 LALRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDSTFEKDSVPPDT 403
Query: 363 EDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK-KKQPKQQQLSLIESL 421
+CINK DEF MSDDL+T + A + LK IN L+ K KKQ K+ +ESL
Sbjct: 404 LNCINKFHDEFVTSMSDDLHTP-VALAALSEPLKTINDLLHTRKGKKQEKR-----LESL 457
Query: 422 RKIENEVKEVLRILGLLPPGAYSEV 446
+E ++++VL +LGL+P +YSE
Sbjct: 458 AALEKKIRDVLSVLGLMPT-SYSEA 481
|
Length = 557 |
| >gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 626 bits (1617), Expect = 0.0
Identities = 207/423 (48%), Positives = 266/423 (62%), Gaps = 23/423 (5%)
Query: 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCE 77
LKIYN++T+QKE F P+ GKV MYVCG T YD +H+GHAR+ V FD+L RYL +L +
Sbjct: 2 MLKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYK 61
Query: 78 VTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQ 137
VTYVRN TD+DDKII+RAN+ GE+ L+ RY + DM L LPP +PR ++H+ +
Sbjct: 62 VTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPE 121
Query: 138 IKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
I ++I ++I+ AY +GDV+F V K P+YG+LSG+ L+ +AG RV V KR+P DF
Sbjct: 122 IIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
ALWKAAK GEPSW+SPWG GRPGWHIECSAMS YL FDIHGGG DLIFPHHENEIAQ
Sbjct: 182 ALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S AA +YWMHNG VT N EKMSKSLGNFFTIR + ++Y P LR FL+SAHYRSP
Sbjct: 242 SEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LN+S L+ A A+ +Y L + + A + + ++ F M
Sbjct: 302 LNFSEEALEQAKKALERLYNALAETALGEDD-----------EALLAELEEFKERFIEAM 350
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT L + + IN +L K E+ + ++ + +LGL
Sbjct: 351 DDDFNTPEALA-VLFELAREINRALETKDK-----------EAAAALAALLRALADVLGL 398
Query: 438 LPP 440
Sbjct: 399 EQD 401
|
Length = 463 |
| >gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 551 bits (1423), Expect = 0.0
Identities = 205/429 (47%), Positives = 257/429 (59%), Gaps = 28/429 (6%)
Query: 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCE 77
LK+YN++T+QKE F PI GKV MYVCG T YD +H+GHAR V FD+L RYL +L +
Sbjct: 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYK 60
Query: 78 VTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQ 137
VTYVRN TD+DDKII RA + G + ++ RY + DM L LPP +PR ++H+++
Sbjct: 61 VTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDE 120
Query: 138 IKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSG-QRLENNRAGERVAVDSRKRNPA 195
I + I ++I AYV + GDV+F V K +YG+LSG LE +AG RV VD KRNP
Sbjct: 121 IIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEKRNPL 180
Query: 196 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255
DF LWKAAK GEPSWDSPWG GRPGWHIECSAMS YL FDIHGGG DLIFPHHENEI
Sbjct: 181 DFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEI 240
Query: 256 AQSCAACQDSN-VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHY 314
AQS AA YWMHNG + + EKMSKSLGNF T+R + ++Y P LR FL+S+HY
Sbjct: 241 AQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHY 300
Query: 315 RSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFH 374
RSPL++S L+ A A+ +Y L+ A + + F
Sbjct: 301 RSPLDFSEELLEEAKKALERLYNALRRLRDLA------------GDAELADLKEFEARFR 348
Query: 375 ARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRI 434
+ DD NT L + K IN L + K + LS + K +L I
Sbjct: 349 EALDDDFNTPKALA-VLFELAKEINRLLE--EGKSDAKAVLSAL----------KALLAI 395
Query: 435 LGLLPPGAY 443
LGL G +
Sbjct: 396 LGLKVLGLF 404
|
Length = 464 |
| >gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 484 bits (1248), Expect = e-169
Identities = 200/432 (46%), Positives = 267/432 (61%), Gaps = 26/432 (6%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LK+YN++T+QKE F P+V+GKV MYVCG T YD H+GHAR A+ FD+L RYL +L +V
Sbjct: 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YV+N TD+DDKII+RA + GE+ +S R+ + Y DM L LPP +PR ++H+++I
Sbjct: 61 QYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEI 120
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
+ I Q+I AYV + GDV+F V K +YG+LS Q L+ AG RV VD KRN DF
Sbjct: 121 IEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNKLDF 180
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK++K GEP WDSPWG GRPGWHIECSAM+ YL + DIHGGG+DLIFPHHENEIAQ
Sbjct: 181 VLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQ 240
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S AA YWMHNG + +NEKMSKSLGNFFT+R + + Y P LR+FL+S HYRSP
Sbjct: 241 SEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSP 300
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
L++S L++A +A+ +Y+ L+ + +L+ + + F M
Sbjct: 301 LDFSEELLEAAKNALERLYKALRVLDTSLAYSGNQSLNKFPDE------KEFEARFVEAM 354
Query: 378 SDDLNTSHILT-------------------GAFQDALKFINSSLNMLKKKQPKQQQLSLI 418
DDLNT++ L + L F+ S L +L K Q
Sbjct: 355 DDDLNTANALAVLFELAKSINLTFVSKADAALLIEHLIFLESRLGLLLGLPSKPVQAGSN 414
Query: 419 ESLRKIENEVKE 430
+ L +IE ++E
Sbjct: 415 DDLGEIEALIEE 426
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln) [Protein synthesis, tRNA aminoacylation]. Length = 464 |
| >gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain | Back alignment and domain information |
|---|
Score = 442 bits (1139), Expect = e-155
Identities = 171/291 (58%), Positives = 212/291 (72%), Gaps = 1/291 (0%)
Query: 32 FTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI 91
F P+ +GKV MYVCG T YD SH+GHAR+AV+FD+L RYL+ L +V +V+NFTD+DDKI
Sbjct: 2 FVPLHQGKVNMYVCGPTVYDDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKI 61
Query: 92 IRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCA 151
I+RA GE+ L+ R+ Y DM L LPP +PRV++H+++I + I ++I A
Sbjct: 62 IKRAQQQGESFRELAARFITAYTKDMDALNVLPPDLEPRVTEHIDEIIEFIERLIKKGYA 121
Query: 152 YVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSW 210
YV + GDV+F V P+YG+LSGQ LE AG R V KR+P DFALWKA+K GEPSW
Sbjct: 122 YVSDNGDVYFDVSSFPDYGKLSGQNLEQLEAGARGEVGEGKRDPLDFALWKASKEGEPSW 181
Query: 211 DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYW 270
DSPWG GRPGWHIECSAM+ YL S+ DIHGGG+DL FPHHENEIAQS AA YW
Sbjct: 182 DSPWGKGRPGWHIECSAMARKYLGSQIDIHGGGVDLKFPHHENEIAQSEAAFDQQLAKYW 241
Query: 271 MHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYS 321
+HNGH+ EKMSKSLGNF TIR + +RY P LR+FL+S HYRSPL++S
Sbjct: 242 LHNGHLMIEGEKMSKSLGNFLTIRDVLKRYDPRILRYFLLSVHYRSPLDFS 292
|
This family includes only cysteinyl tRNA synthetases. Length = 301 |
| >gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Score = 367 bits (944), Expect = e-121
Identities = 175/453 (38%), Positives = 238/453 (52%), Gaps = 33/453 (7%)
Query: 14 KMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLE- 72
K LK+ NS+T K F P +V Y CG T YD SHLGHAR V+FD++ R LE
Sbjct: 35 KYLTGLKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILED 94
Query: 73 HLKCEVTYVRNFTDVDDKIIRRANDLG-ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRV 131
+ +V YV N TD+DDKII+RA + L L+ ++ +E+ DM L PP RV
Sbjct: 95 YFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMKALNVRPPDVITRV 154
Query: 132 SDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----SPNYGRL---SGQRLENNRAGER 184
S+++ +I D I +II+N AY G V+F VE Y +L S + GE
Sbjct: 155 SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLEPESVADEDRIAEGEG 214
Query: 185 V--AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 242
V KR+P DFALWKA+K GEPSWDSPWG GRPGWHIECSAM+++ L DIH G
Sbjct: 215 ALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSG 274
Query: 243 GIDLIFPHHENEIAQSCAACQDSN--VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERY 300
GIDL FPHH+NE+AQS A D + V+Y++H+GH+ KMSKSL NF TIRQ +Y
Sbjct: 275 GIDLKFPHHDNELAQS-EAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKY 333
Query: 301 HPLALR-HFLISAHYRSPLNYSVLQLDSA--SDAVFYIYQTLQDCEVALSPFQEHGKTAR 357
+R FL+ + P+NYS +D A D VF+ + + ++ L + +
Sbjct: 334 TARQIRLLFLLH-KWDKPMNYSDESMDEAIEKDKVFFNF--FANVKIKLRESEL-TSPQK 389
Query: 358 INPAAEDCINKLR---DEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ 414
+ HA + D+ +T L A Q + N+ LN +QP
Sbjct: 390 WTQHDFELNELFEETKSAVHAALLDNFDTPEALQ-ALQKLISATNTYLN--SGEQPSAPL 446
Query: 415 LSLIESLRKIENEVKEVLRILGLLPPGAYSEVK 447
LR + V ++L I GL+ +
Sbjct: 447 ------LRSVAQYVTKILSIFGLVEGSDGLGSQ 473
|
Length = 651 |
| >gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 364 bits (935), Expect = e-119
Identities = 186/391 (47%), Positives = 238/391 (60%), Gaps = 30/391 (7%)
Query: 21 IYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTY 80
IYN++T+QKE F PI V MYVCG+T YD HLGHAR V FD++ R+L +TY
Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTY 289
Query: 81 VRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKD 140
VRN TD+DDKII RA + GE L+ R+ Q D L L P +P+ ++++ Q+
Sbjct: 290 VRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIA 349
Query: 141 MITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFAL 199
MI +I N AY GDV++AV + YG+LSG+ L++ RAGERV VD KR+P DF L
Sbjct: 350 MIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPLDFVL 409
Query: 200 WKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC 259
WKAAKAGEP+W+SPWG GRPGWHIECSAMS + FDIHGGG DL FPHHENEIAQS
Sbjct: 410 WKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHHENEIAQSV 469
Query: 260 AACQD----------------SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPL 303
A S+V YW+HNG + + EKMSKSLGNFFTIR++ ++Y P
Sbjct: 470 GATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPE 529
Query: 304 ALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAE 363
+R F++ AHYRSPLNYS LD A A+ +Y TL++ A
Sbjct: 530 VVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA-------------EFMLS 576
Query: 364 DCINKLRDEFHARMSDDLNTSHILTGAFQDA 394
+ +N F+A M+DD T + F+ A
Sbjct: 577 ENVNDYTRRFYAAMNDDFGTVEAVAVLFELA 607
|
Length = 699 |
| >gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 297 bits (763), Expect = 5e-96
Identities = 141/407 (34%), Positives = 205/407 (50%), Gaps = 49/407 (12%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L++YN++ +Q+E F PI G V +Y CG T Y+ +H+G+ R V D L R L L
Sbjct: 1 MALRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGY 60
Query: 77 EVTYVRNFTDV----------DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPT 126
VT+V N TDV +DK+++ A + G++ L ++ Y + D A L P+
Sbjct: 61 RVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPS 120
Query: 127 YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVA 186
++H++ + +I ++ Y G+V+F + P+YG L+ +E+ +AG R+
Sbjct: 121 IVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDLQAGARIE 180
Query: 187 VDSRKRNPADFALWKAAKAGEP---SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 243
D+ KRNP DF LW E +WDSPWG G PGWHIECSAMS YL + DIH GG
Sbjct: 181 HDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGG 240
Query: 244 IDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHP 302
+D I HH NEIAQ AA V YW+H+ + N KMSKS G F T+ + E+ + P
Sbjct: 241 VDHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQP 300
Query: 303 LALRHFLISAHYRSPLNYS------------------VLQLDSASDAVFYIYQTLQDC-- 342
L R FL+ HYRS L +S +D+A + TL +C
Sbjct: 301 LDYRFFLLGGHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAA 360
Query: 343 -EVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 388
VA S +E + +F A + DD +T L+
Sbjct: 361 ERVAESR----------ASESELLL----TDFRAALEDDFSTPKALS 393
|
Length = 490 |
| >gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Score = 273 bits (701), Expect = 7e-88
Identities = 135/379 (35%), Positives = 204/379 (53%), Gaps = 39/379 (10%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
L+++++ Q P + GMYVCG+T YD +HLGHA ++FDL+ R V
Sbjct: 18 LRLFDTADGQVRPVEP--GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRV 75
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YV+N TDVDD + RA G + L + DM L+ LPP + ++++
Sbjct: 76 HYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEV 135
Query: 139 KDMITQIINNDCAYVVEG----DVFFAVEKSPNYGRLSG------QRLENNRAG--ERVA 186
+M+ +++ + AY+VEG DV+F+++ + +G SG L R G +R
Sbjct: 136 VEMVEKLLASGAAYIVEGPEYPDVYFSIDATEQFGYESGYDRATMLELFAERGGDPDRPG 195
Query: 187 VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDL 246
KR+P D LW+AA+ GEPSWDSP+G GRPGWHIECSA++ + L + FDI GGG DL
Sbjct: 196 ----KRDPLDALLWRAAREGEPSWDSPFGRGRPGWHIECSAIALNRLGAGFDIQGGGSDL 251
Query: 247 IFPHHENEIAQSCAACQDSNVS-YWMHNGHVTNNNEKMSKSLGNFFTIRQIT-ERYHPLA 304
IFPHHE A + AA ++ +++H G + + EKMSKSLGN + ++ P A
Sbjct: 252 IFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAA 311
Query: 305 LRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAED 364
+R L++ HYR ++ +DAV L + E L+ ++ P A D
Sbjct: 312 IRLGLLAGHYRQDRDW--------TDAV------LAEAEARLARWRA-ALALPDAPDATD 356
Query: 365 CINKLRDEFHARMSDDLNT 383
I +LR +++DL+T
Sbjct: 357 LIARLRQH----LANDLDT 371
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 411 |
| >gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 261 bits (670), Expect = 2e-83
Identities = 129/356 (36%), Positives = 189/356 (53%), Gaps = 29/356 (8%)
Query: 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND 97
G MYVCG+T YD +HLGHA ++FDL+ R +V YV+N TDVDD ++ RA
Sbjct: 8 GTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAAR 67
Query: 98 LGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG- 156
G + L+ R + DM L+ LPP + + ++ +++ +++ + AYVV+
Sbjct: 68 DGVDWRDLAEREIALFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDE 127
Query: 157 ---DVFFAVEKSPNYGRLSGQRLENNRA--GERVAVDSR--KRNPADFALWKAAKAGEPS 209
DV+F+V+ +P +G SG ER R KR+P D LW+AA+ GEPS
Sbjct: 128 EYPDVYFSVDATPQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAARPGEPS 187
Query: 210 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC-QDSNVS 268
W SP+GPGRPGWHIECSA++ + L S FDI GGG DLIFPHHE A + AA +
Sbjct: 188 WPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFAR 247
Query: 269 YWMHNGHVTNNNEKMSKSLGNFFTIRQIT-ERYHPLALRHFLISAHYRSPLNYSVLQLDS 327
+++H G + + EKMSKS GN + ++ P A+R L++ HYR+ ++ L
Sbjct: 248 HYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAE 307
Query: 328 ASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNT 383
A L A + P A D + ++R ++DDL+T
Sbjct: 308 AEA-------RLARWRAAAA--------LPAGPDAADVVARVRA----ALADDLDT 344
|
Length = 384 |
| >gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 6e-59
Identities = 64/101 (63%), Positives = 76/101 (75%)
Query: 221 WHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNN 280
WHIECSAM+ YL FDIHGGG+DLIFPHHENEIAQS AA YW+H GH+T +
Sbjct: 113 WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDG 172
Query: 281 EKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYS 321
EKMSKSLGNF T+R ++Y P LR L+S+HYRSPL++S
Sbjct: 173 EKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS 213
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213 |
| >gnl|CDD|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (502), Expect = 1e-57
Identities = 136/449 (30%), Positives = 212/449 (47%), Gaps = 40/449 (8%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ LK+YN+ T+ KV Y CG T Y+ +H+G+ R + DLL + L LK
Sbjct: 1 MLLKLYNTKTKDLSELKNFSDVKV--YACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKY 58
Query: 77 EVTYVRNFTDV----------DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPT 126
V Y N TD+ +DK+++ A + G +S + + + D L + P
Sbjct: 59 NVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPD 118
Query: 127 YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNR--AGER 184
S+++ + +++ + N Y V G+V+F +YG+++G L + + + R
Sbjct: 119 KVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSR 178
Query: 185 VAVDSRKRNPADFALW---KAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHG 241
V +D KRN +DF LW K E WDSPWG G P WH+EC+AM+ Y S DIH
Sbjct: 179 VEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHL 238
Query: 242 GGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI-TERY 300
GG+D I HH NEIA + ++H + EKMSKS NF TI+ + + +
Sbjct: 239 GGVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGF 298
Query: 301 HPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINP 360
PL R+F ++AHYR+ L ++ L + A + L +L F +N
Sbjct: 299 SPLDFRYFCLTAHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFD-------LNL 351
Query: 361 AAEDCIN-------KLRDEFHARMSDDLNTSHILTGAFQDALKFIN-SSLNMLKKKQPKQ 412
+D N + D F +++ DLN L D +K N S L+ L+
Sbjct: 352 LNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGL-ALLWDIIKDDNLSFLSKLRLAFKFD 410
Query: 413 QQLSL---IESLRKIENE---VKEVLRIL 435
+ LSL E LR+IEN + + ++ L
Sbjct: 411 EVLSLGLREEILREIENHRIVIDDNMKSL 439
|
Length = 481 |
| >gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 9e-51
Identities = 57/112 (50%), Positives = 77/112 (68%)
Query: 20 KIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVT 79
++YN++T+QKE F P+ G V MYVCG T YD +H+GHAR V FD+L RYLE L +V
Sbjct: 1 RLYNTLTRQKEEFVPLNPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVR 60
Query: 80 YVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRV 131
YV+N TD+DDKII+RA + G + +++ Y +E+ DM L LPP PRV
Sbjct: 61 YVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKALNVLPPDVVPRV 112
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213 |
| >gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-11
Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 13/117 (11%)
Query: 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGEN 101
G+T H+GH R V+FD L + L +V + D I AN GEN
Sbjct: 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGEN 60
Query: 102 PLSLSNRYCQ------EYLVDMADLQCL----PPTYQPRVSDHM---EQIKDMITQI 145
+ R+ + EY+ A L SD + E +++ +
Sbjct: 61 AKAFVERWIERIKEDVEYMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKA 117
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 143 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 23/90 (25%)
Query: 237 FDIHGGGIDLI--------FPHHENEIAQSCAACQDSN--VSYW----MHNGHVTNNNEK 282
DI+ GG + F H A D + G V EK
Sbjct: 225 VDIYIGGKEHAPNHLLYSRFNHK---------ALFDEGLVTDEPPKGLIVQGMVLLEGEK 275
Query: 283 MSKSLGNFFTIRQITERYHPLALRHFLISA 312
MSKS GN T + ++Y A R +++ A
Sbjct: 276 MSKSKGNVVTPDEAIKKYGADAARLYILFA 305
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 9e-07
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311
+G +T +KMSKS GN ++ E+Y ALR++L
Sbjct: 324 HGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLAR 362
|
Length = 558 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
+G +T KMSKS GN ++ +RY ALR++L
Sbjct: 315 HGWLTVEGGKMSKSRGNVVDPDELLDRYGVDALRYYLARE 354
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 21/40 (52%), Positives = 25/40 (62%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
NGH+ N+EKMSKS GNF T+RQ E + A R L A
Sbjct: 709 NGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADA 748
|
Length = 1084 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 7e-06
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
+G++T +KMSKS GN + ERY ALR++L+
Sbjct: 271 HGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRE 310
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
NG V +KMSKS GN +R+ E Y +R +L S+
Sbjct: 568 NGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSS 607
|
Length = 897 |
| >gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-05
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 220 GWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS-CAACQDSNVSYWMHNGHVT- 277
+ +A ++ DIH GG D + H E + A + + G V
Sbjct: 77 EYMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPARP--FGLTFGRVMG 133
Query: 278 NNNEKMSKSL 287
+ KMSKS
Sbjct: 134 ADGTKMSKSK 143
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 143 |
| >gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
NG+V +KMSKS GN T+ Q E++ R ++ A
Sbjct: 611 NGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADA 650
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS [Protein synthesis, tRNA aminoacylation]. Length = 938 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 29/119 (24%), Positives = 40/119 (33%), Gaps = 16/119 (13%)
Query: 209 SWDSPWGPGRPGWHIEC-------SAMSAHYLSSKF--------DIHGGGIDLIFPHHEN 253
S WG P + S Y K D H G D++
Sbjct: 184 SRQRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANF 243
Query: 254 EIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311
I A + + +G V +KMSKS GN + E+Y ALR++L S
Sbjct: 244 WITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTS 302
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 273 NGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
G V EKMSKS GN + E+Y +R +++ A
Sbjct: 569 QGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFA 609
|
Length = 814 |
| >gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311
+G +T + EKMSKSLGN + + Y A+R+FL+
Sbjct: 290 HGFLTLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLR 328
|
Length = 511 |
| >gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 274 GHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311
G++T KMSKSLGN + R+ LR++L+
Sbjct: 319 GYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLK 356
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530 |
| >gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.003
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
+ ++T K SKS G + ERY P LR++L +
Sbjct: 325 SEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAAN 364
|
Length = 556 |
| >gnl|CDD|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.003
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 278 NNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310
EK+SKS GN TI E P +LR F+
Sbjct: 276 KKGEKISKSKGNVITIEDWLEYAPPESLRLFMF 308
|
Length = 510 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| PLN02946 | 557 | cysteine-tRNA ligase | 100.0 | |
| COG0215 | 464 | CysS Cysteinyl-tRNA synthetase [Translation, ribos | 100.0 | |
| PRK14535 | 699 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PRK00260 | 463 | cysS cysteinyl-tRNA synthetase; Validated | 100.0 | |
| PTZ00399 | 651 | cysteinyl-tRNA-synthetase; Provisional | 100.0 | |
| TIGR03447 | 411 | mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- | 100.0 | |
| PRK14536 | 490 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00435 | 465 | cysS cysteinyl-tRNA synthetase. This model finds t | 100.0 | |
| PRK14534 | 481 | cysS cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| PRK12418 | 384 | cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| KOG2007 | 586 | consensus Cysteinyl-tRNA synthetase [Translation, | 100.0 | |
| PF01406 | 300 | tRNA-synt_1e: tRNA synthetases class I (C) catalyt | 100.0 | |
| COG0143 | 558 | MetG Methionyl-tRNA synthetase [Translation, ribos | 100.0 | |
| PLN02610 | 801 | probable methionyl-tRNA synthetase | 100.0 | |
| PLN02224 | 616 | methionine-tRNA ligase | 100.0 | |
| PRK11893 | 511 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK12267 | 648 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK00133 | 673 | metG methionyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00398 | 530 | metG methionyl-tRNA synthetase. The methionyl-tRNA | 100.0 | |
| PRK12268 | 556 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG0436 | 578 | consensus Methionyl-tRNA synthetase [Translation, | 100.0 | |
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal | 100.0 | |
| cd00672 | 213 | CysRS_core catalytic core domain of cysteinyl tRNA | 100.0 | |
| TIGR00422 | 861 | valS valyl-tRNA synthetase. The valyl-tRNA synthet | 100.0 | |
| PF09334 | 391 | tRNA-synt_1g: tRNA synthetases class I (M); InterP | 100.0 | |
| PRK13208 | 800 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK05729 | 874 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK14900 | 1052 | valS valyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02943 | 958 | aminoacyl-tRNA ligase | 100.0 | |
| PRK05743 | 912 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK01611 | 507 | argS arginyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK06039 | 975 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02882 | 1159 | aminoacyl-tRNA ligase | 100.0 | |
| TIGR00395 | 938 | leuS_arch leucyl-tRNA synthetase, archaeal and cyt | 100.0 | |
| PLN02381 | 1066 | valyl-tRNA synthetase | 100.0 | |
| cd00668 | 312 | Ile_Leu_Val_MetRS_core catalytic core domain of is | 100.0 | |
| PTZ00419 | 995 | valyl-tRNA synthetase-like protein; Provisional | 100.0 | |
| cd00814 | 319 | MetRS_core catalytic core domain of methioninyl-tR | 100.0 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 100.0 | |
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 100.0 | |
| TIGR00392 | 861 | ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA | 100.0 | |
| PRK13804 | 961 | ileS isoleucyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02843 | 974 | isoleucyl-tRNA synthetase | 100.0 | |
| PTZ00427 | 1205 | isoleucine-tRNA ligase, putative; Provisional | 100.0 | |
| KOG1247 | 567 | consensus Methionyl-tRNA synthetase [Translation, | 100.0 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 100.0 | |
| COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribos | 100.0 | |
| cd00817 | 382 | ValRS_core catalytic core domain of valyl-tRNA syn | 100.0 | |
| COG0018 | 577 | ArgS Arginyl-tRNA synthetase [Translation, ribosom | 100.0 | |
| PRK12451 | 562 | arginyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK12300 | 897 | leuS leucyl-tRNA synthetase; Reviewed | 100.0 | |
| cd00812 | 314 | LeuRS_core catalytic core domain of leucyl-tRNA sy | 100.0 | |
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| TIGR00456 | 566 | argS arginyl-tRNA synthetase. This model recognize | 100.0 | |
| PLN02286 | 576 | arginine-tRNA ligase | 100.0 | |
| cd00818 | 338 | IleRS_core catalytic core domain of isoleucyl-tRNA | 100.0 | |
| KOG0432 | 995 | consensus Valyl-tRNA synthetase [Translation, ribo | 100.0 | |
| PLN02959 | 1084 | aminoacyl-tRNA ligase | 100.0 | |
| KOG0435 | 876 | consensus Leucyl-tRNA synthetase [Translation, rib | 100.0 | |
| cd00674 | 353 | LysRS_core_class_I catalytic core domain of class | 100.0 | |
| KOG0433 | 937 | consensus Isoleucyl-tRNA synthetase [Translation, | 100.0 | |
| PRK00750 | 510 | lysK lysyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG0434 | 1070 | consensus Isoleucyl-tRNA synthetase [Translation, | 100.0 | |
| PF00133 | 601 | tRNA-synt_1: tRNA synthetases class I (I, L, M and | 100.0 | |
| TIGR00467 | 515 | lysS_arch lysyl-tRNA synthetase, archaeal and spir | 99.97 | |
| cd00671 | 212 | ArgRS_core catalytic core domain of arginyl-tRNA s | 99.97 | |
| KOG4426 | 656 | consensus Arginyl-tRNA synthetase [Translation, ri | 99.97 | |
| COG1384 | 521 | LysS Lysyl-tRNA synthetase (class I) [Translation, | 99.96 | |
| PF01921 | 360 | tRNA-synt_1f: tRNA synthetases class I (K); InterP | 99.94 | |
| PF00750 | 354 | tRNA-synt_1d: tRNA synthetases class I (R); InterP | 99.93 | |
| cd00802 | 143 | class_I_aaRS_core catalytic core domain of class I | 99.9 | |
| KOG1195 | 567 | consensus Arginyl-tRNA synthetase [Translation, ri | 99.9 | |
| PRK04156 | 567 | gltX glutamyl-tRNA synthetase; Provisional | 99.88 | |
| KOG0437 | 1080 | consensus Leucyl-tRNA synthetase [Translation, rib | 99.83 | |
| TIGR00464 | 470 | gltX_bact glutamyl-tRNA synthetase, bacterial fami | 99.79 | |
| cd09287 | 240 | GluRS_non_core catalytic core domain of non-discri | 99.76 | |
| PRK01406 | 476 | gltX glutamyl-tRNA synthetase; Reviewed | 99.76 | |
| PRK12410 | 433 | glutamylglutaminyl-tRNA synthetase; Provisional | 99.73 | |
| PRK12558 | 445 | glutamyl-tRNA synthetase; Provisional | 99.72 | |
| PRK14895 | 513 | gltX glutamyl-tRNA synthetase; Provisional | 99.68 | |
| cd00418 | 230 | GlxRS_core catalytic core domain of glutamyl-tRNA | 99.68 | |
| PLN02627 | 535 | glutamyl-tRNA synthetase | 99.67 | |
| PLN03233 | 523 | putative glutamate-tRNA ligase; Provisional | 99.64 | |
| PRK05710 | 299 | glutamyl-Q tRNA(Asp) synthetase; Reviewed | 99.64 | |
| TIGR03838 | 272 | queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe | 99.63 | |
| COG0008 | 472 | GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr | 99.62 | |
| cd00807 | 238 | GlnRS_core catalytic core domain of glutaminyl-tRN | 99.6 | |
| PRK05347 | 554 | glutaminyl-tRNA synthetase; Provisional | 99.59 | |
| PF00749 | 314 | tRNA-synt_1c: tRNA synthetases class I (E and Q), | 99.58 | |
| PTZ00402 | 601 | glutamyl-tRNA synthetase; Provisional | 99.58 | |
| TIGR00463 | 560 | gltX_arch glutamyl-tRNA synthetase, archaeal and e | 99.57 | |
| PRK14703 | 771 | glutaminyl-tRNA synthetase/YqeY domain fusion prot | 99.57 | |
| cd00808 | 239 | GluRS_core catalytic core domain of discriminating | 99.56 | |
| PLN02907 | 722 | glutamate-tRNA ligase | 99.55 | |
| TIGR00440 | 522 | glnS glutaminyl-tRNA synthetase. This protein is a | 99.55 | |
| PTZ00437 | 574 | glutaminyl-tRNA synthetase; Provisional | 99.53 | |
| PLN02859 | 788 | glutamine-tRNA ligase | 99.49 | |
| cd07956 | 156 | Anticodon_Ia_Arg Anticodon-binding domain of argin | 99.46 | |
| KOG1149 | 524 | consensus Glutamyl-tRNA synthetase (mitochondrial) | 99.43 | |
| cd07960 | 180 | Anticodon_Ia_Ile_BEm Anticodon-binding domain of b | 99.33 | |
| cd07961 | 183 | Anticodon_Ia_Ile_ABEc Anticodon-binding domain of | 99.25 | |
| cd07962 | 135 | Anticodon_Ia_Val Anticodon-binding domain of valyl | 99.25 | |
| cd07957 | 129 | Anticodon_Ia_Met Anticodon-binding domain of methi | 99.21 | |
| cd07959 | 117 | Anticodon_Ia_Leu_AEc Anticodon-binding domain of a | 99.16 | |
| cd07958 | 117 | Anticodon_Ia_Leu_BEm Anticodon-binding domain of b | 99.16 | |
| PF05746 | 119 | DALR_1: DALR anticodon binding domain; InterPro: I | 99.0 | |
| PF08264 | 153 | Anticodon_1: Anticodon-binding domain of tRNA; Int | 98.96 | |
| smart00836 | 122 | DALR_1 DALR anticodon binding domain. This all alp | 98.61 | |
| cd07375 | 117 | Anticodon_Ia_like Anticodon-binding domain of clas | 98.58 | |
| KOG1147 | 712 | consensus Glutamyl-tRNA synthetase [Translation, r | 98.14 | |
| TIGR00233 | 328 | trpS tryptophanyl-tRNA synthetase. This model repr | 97.81 | |
| PRK12285 | 368 | tryptophanyl-tRNA synthetase; Reviewed | 97.77 | |
| PRK13354 | 410 | tyrosyl-tRNA synthetase; Provisional | 97.75 | |
| COG0180 | 314 | TrpS Tryptophanyl-tRNA synthetase [Translation, ri | 97.61 | |
| PRK08560 | 329 | tyrosyl-tRNA synthetase; Validated | 97.57 | |
| PRK05912 | 408 | tyrosyl-tRNA synthetase; Validated | 97.56 | |
| cd00395 | 273 | Tyr_Trp_RS_core catalytic core domain of tyrosinyl | 97.47 | |
| PF00579 | 292 | tRNA-synt_1b: tRNA synthetases class I (W and Y); | 97.45 | |
| PF09190 | 63 | DALR_2: DALR domain; InterPro: IPR015273 The amino | 97.42 | |
| cd00805 | 269 | TyrRS_core catalytic core domain of tyrosinyl-tRNA | 97.35 | |
| cd00806 | 280 | TrpRS_core catalytic core domain of tryptophanyl-t | 97.31 | |
| PTZ00126 | 383 | tyrosyl-tRNA synthetase; Provisional | 97.28 | |
| COG0162 | 401 | TyrS Tyrosyl-tRNA synthetase [Translation, ribosom | 97.19 | |
| KOG1148 | 764 | consensus Glutaminyl-tRNA synthetase [Translation, | 97.03 | |
| PTZ00348 | 682 | tyrosyl-tRNA synthetase; Provisional | 96.56 | |
| TIGR00234 | 377 | tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy | 96.52 | |
| smart00840 | 56 | DALR_2 This DALR domain is found in cysteinyl-tRNA | 96.46 | |
| cd07963 | 156 | Anticodon_Ia_Cys Anticodon-binding domain of cyste | 96.4 | |
| cd07955 | 81 | Anticodon_Ia_Cys_like Anticodon-binding domain of | 93.99 | |
| PLN02486 | 383 | aminoacyl-tRNA ligase | 92.96 | |
| PRK12556 | 332 | tryptophanyl-tRNA synthetase; Provisional | 92.48 | |
| COG1656 | 165 | Uncharacterized conserved protein [Function unknow | 92.29 | |
| PF01927 | 147 | Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T | 91.26 | |
| PRK01233 | 682 | glyS glycyl-tRNA synthetase subunit beta; Validate | 90.92 | |
| COG0751 | 691 | GlyS Glycyl-tRNA synthetase, beta subunit [Transla | 90.25 | |
| TIGR00211 | 691 | glyS glycyl-tRNA synthetase, tetrameric type, beta | 90.07 | |
| PRK12282 | 333 | tryptophanyl-tRNA synthetase II; Reviewed | 89.6 | |
| PRK12284 | 431 | tryptophanyl-tRNA synthetase; Reviewed | 88.94 | |
| PRK14908 | 1000 | glycyl-tRNA synthetase; Provisional | 86.3 | |
| PRK00927 | 333 | tryptophanyl-tRNA synthetase; Reviewed | 84.3 | |
| PLN02486 | 383 | aminoacyl-tRNA ligase | 82.36 | |
| PRK12283 | 398 | tryptophanyl-tRNA synthetase; Reviewed | 80.19 |
| >PLN02946 cysteine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-87 Score=685.36 Aligned_cols=429 Identities=65% Similarity=1.129 Sum_probs=383.7
Q ss_pred ccccCcccCCCCCcceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecC
Q 012397 4 SKETGTVAAPKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRN 83 (464)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~ 83 (464)
+.++|+. .....+|+||||++++++.|.|.++++|.+|+||||||+.+||||+|++|.+|+|+|+||..|++|.|+.|
T Consensus 47 ~~~~~~~--~~~~~~l~lyNTltr~ke~f~P~~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~n 124 (557)
T PLN02946 47 LASNGAP--ASRGRELHLYNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRN 124 (557)
T ss_pred hccCCCc--CCCCCceEEEECCCCCeeccccCCCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEEC
Confidence 4455554 46667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCC
Q 012397 84 FTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVE 163 (464)
Q Consensus 84 ~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~ 163 (464)
+||+|+||+.+|+++|++|++++++|.+.|.++++.|||..++..+++++|++.+++++++|+++|++|++++++|||+.
T Consensus 125 iTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~ 204 (557)
T PLN02946 125 FTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVD 204 (557)
T ss_pred CCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecC
Confidence 99999999999999999999999999999999999999997888999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEec
Q 012397 164 KSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 243 (464)
Q Consensus 164 ~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G 243 (464)
.++.||+|++..++++..|.+++.+..|++|.||++||..++|++.|+++||.|+|+||+||++|+.+++|.++|||++|
T Consensus 205 ~f~~YG~Ls~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG 284 (557)
T PLN02946 205 KFPEYGKLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGG 284 (557)
T ss_pred cchhhhhcCCCChhHhhcCCCCCcccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccc
Confidence 99999999999999988899988888899999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHH
Q 012397 244 IDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVL 323 (464)
Q Consensus 244 ~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~ 323 (464)
.|++||||.+++|+..|+.+.++.++|+|+|||+++|+|||||+||++++.|+++.|++|++|||+++.++.++++|+++
T Consensus 285 ~DL~FPHHENEiAQsea~~g~~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hyr~~l~fs~e 364 (557)
T PLN02946 285 MDLVFPHHENEIAQSCAACCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDV 364 (557)
T ss_pred cccCCCcccchHHHHHHHhCCCCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCCCCCcEecHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q 012397 324 QLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (464)
Q Consensus 324 ~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~ 403 (464)
.+.++.+.+.+++++++++.+.+.+..........+..+...+..+.+.+.++|+|++++|.|++. |+++++.+|++++
T Consensus 365 ~L~~a~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~-l~~~vk~~N~~~~ 443 (557)
T PLN02946 365 QLESASERIFYIYQTLHDCEESLQQHDSTFEKDSVPPDTLNCINKFHDEFVTSMSDDLHTPVALAA-LSEPLKTINDLLH 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHHHHhh
Confidence 999999999999999999887664321100001112234455677889999999999999999999 9999999999986
Q ss_pred hhcccCchhhhhhHHHHHHHHHHHHHHHHHhhccCC
Q 012397 404 MLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLP 439 (464)
Q Consensus 404 ~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLgi~p 439 (464)
.... . ....++..+..+...+..++.+|||.+
T Consensus 444 ~~~~---~-~~~~~~~~l~~~~~~~~~~~~vLGl~~ 475 (557)
T PLN02946 444 TRKG---K-KQEKRLESLAALEKKIRDVLSVLGLMP 475 (557)
T ss_pred hccc---c-cccchHHHHHHHHHHHHHHHHHcCCCc
Confidence 5310 0 011123334556667777889999754
|
|
| >COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-84 Score=645.03 Aligned_cols=376 Identities=52% Similarity=0.889 Sum_probs=353.5
Q ss_pred ceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH
Q 012397 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND 97 (464)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~ 97 (464)
.|+||||+||+++.|.|.++++|++|+||||||...||||+|++|..|++.|+|+..|+.|.|+.++.|.++||+.+|.+
T Consensus 1 ~l~iyNTltr~ke~F~P~~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~ 80 (464)
T COG0215 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRARE 80 (464)
T ss_pred CcEEEecCccceecccCCCCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEee-cCcEEEcCCCCCCCCCCCCc-c
Q 012397 98 LGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQ-R 175 (464)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~-~~~~~~~~~~~~~~g~l~~~-~ 175 (464)
.|.++.+++++|..+|.++++.|||..++..||+|+|++.+.+++++|+++|++|.. ++++||++.++++||.||+. .
T Consensus 81 ~g~~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~ 160 (464)
T COG0215 81 EGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDS 160 (464)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCC
Confidence 999999999999999999999999977899999999999999999999999999998 68999999999999999966 7
Q ss_pred ccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHH
Q 012397 176 LENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255 (464)
Q Consensus 176 ~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~ 255 (464)
++++..|.++.....|++|.||++||..++|+|.|++|||.|+|+||+||++|+.+++|..+|||++|.|++||||.+.+
T Consensus 161 le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEi 240 (464)
T COG0215 161 LEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEI 240 (464)
T ss_pred hhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHH
Confidence 78888899998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccC-CCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHH
Q 012397 256 AQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFY 334 (464)
Q Consensus 256 a~~~a~~~-~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~ 334 (464)
|+++|+.+ +++.++|+|+|||+++|+|||||+||++++.|++++|+++++||++++++++++++|+++.+.++.+.+.+
T Consensus 241 AQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~r 320 (464)
T COG0215 241 AQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALER 320 (464)
T ss_pred HHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHH
Confidence 99999988 78899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhc
Q 012397 335 IYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 406 (464)
Q Consensus 335 l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~ 406 (464)
|.+++.++........ .. .+.++..++.++|+|+|++|.|++. |+++++..|+..+.+.
T Consensus 321 l~~~~~~~~~~~~~~~-----~~-------~~~~~~~~f~~al~DDfnt~~al~~-l~~l~~~~~~~~~~~~ 379 (464)
T COG0215 321 LYNALRRLRDLAGDAE-----LA-------DLKEFEARFREALDDDFNTPKALAV-LFELAKEINRLLEEGK 379 (464)
T ss_pred HHHHHHHHHhhccccc-----cc-------hhHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHHhhhhhccc
Confidence 9999987653322110 00 4567777899999999999999999 9999999877766543
|
|
| >PRK14535 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-82 Score=653.81 Aligned_cols=379 Identities=49% Similarity=0.832 Sum_probs=355.0
Q ss_pred cccCCCCCcceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCcccc
Q 012397 9 TVAAPKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD 88 (464)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g 88 (464)
++|.|+..++|+||||++|+++.|.|.++++|.+|+||||||+.+||||+|++|.+|+++|+||..|++|.|++|+||+|
T Consensus 218 ~~~~~~~~~~l~lyNTltr~ke~f~P~~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~D 297 (699)
T PRK14535 218 EQQRLIHNPMTTIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDID 297 (699)
T ss_pred hhhcccccCceEEEECCCCCeeccccCCCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEee-cCcEEEcCCCCCC
Q 012397 89 DKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPN 167 (464)
Q Consensus 89 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~-~~~~~~~~~~~~~ 167 (464)
+||+.+|++.|+++++++++|...|.++++.|||.+++..+++++|++.+++++++|+++|++|+. .+++|||+.+++.
T Consensus 298 DKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~~ 377 (699)
T PRK14535 298 DKIIARAAENGETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAA 377 (699)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccccc
Confidence 999999999999999999999999999999999998888899999999999999999999999987 5699999999999
Q ss_pred CCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCc
Q 012397 168 YGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 247 (464)
Q Consensus 168 ~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~ 247 (464)
||+|++..++++..|.+++.+..|++|.||++||..++|++.|+++||.|+|+||+||++|+.+++|.++|||++|.|++
T Consensus 378 YG~LS~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLi 457 (699)
T PRK14535 378 YGQLSGKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQ 457 (699)
T ss_pred cccccCCChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccC
Confidence 99999998988888999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHhhccCC----------------CCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhh
Q 012397 248 FPHHENEIAQSCAACQD----------------SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311 (464)
Q Consensus 248 ~~h~~~~~a~~~a~~~~----------------~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~ 311 (464)
||||.+.+|++.|+.++ ++.++|+|+|||+++|+|||||+||++++.|+++.|++|++|||+++
T Consensus 458 FPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLs 537 (699)
T PRK14535 458 FPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILR 537 (699)
T ss_pred CCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHc
Confidence 99999999999987554 47899999999999999999999999999999999999999999999
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHH
Q 012397 312 AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAF 391 (464)
Q Consensus 312 ~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl 391 (464)
.+++++++|+++.+.++.+.+.+++.++.++... . ..+...+..+.+.+.++|+|++++|.|++. |
T Consensus 538 shYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~~-~------------~~~~~~l~~~~~~f~~AL~DDlntp~Ala~-L 603 (699)
T PRK14535 538 AHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA-E------------FMLSENVNDYTRRFYAAMNDDFGTVEAVAV-L 603 (699)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhhc-c------------chhhhhHHHHHHHHHHHHhhccChHHHHHH-H
Confidence 9999999999999999999999998887654210 0 011234556778999999999999999999 9
Q ss_pred HHHHHHHHHH
Q 012397 392 QDALKFINSS 401 (464)
Q Consensus 392 ~~l~~~~n~~ 401 (464)
+++++.+|+.
T Consensus 604 ~~lvk~iN~~ 613 (699)
T PRK14535 604 FELAGEVNKT 613 (699)
T ss_pred HHHHHHHHHH
Confidence 9999999986
|
|
| >PRK00260 cysS cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-81 Score=644.75 Aligned_cols=398 Identities=52% Similarity=0.894 Sum_probs=371.8
Q ss_pred ceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH
Q 012397 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND 97 (464)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~ 97 (464)
+|+||||++|+++.|.|..++++.+|+|||||||++||||+|+++++|+++|++|+.|++|.|++|+||+|++|+.+|++
T Consensus 2 ~l~~~ntl~~~~~~f~p~~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~ 81 (463)
T PRK00260 2 MLKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANE 81 (463)
T ss_pred ceEEEECCCCceeecccCCCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHH
Confidence 58999999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCcccc
Q 012397 98 LGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLE 177 (464)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~ 177 (464)
+|++|++++++|.+.|.+++++|||+.++.++++++|++.+++++++|+++|++|++++++|||+.+++.||.|++..++
T Consensus 82 ~g~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~ 161 (463)
T PRK00260 82 EGESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLD 161 (463)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEecccccccccCCCCCHH
Confidence 99999999999999999999999997678999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHH
Q 012397 178 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (464)
Q Consensus 178 ~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~ 257 (464)
++..|.+++.+..|++|.||++||..+.|++.|+++||.++|+||++|++|+.+++|.++|||++|+|++||||.+.+|+
T Consensus 162 ~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neiaq 241 (463)
T PRK00260 162 ELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQ 241 (463)
T ss_pred HHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHHH
Confidence 88888888888889999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHH
Q 012397 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQ 337 (464)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~ 337 (464)
..++.+++|+++|+|+|++..+|+|||||+||+|+|.|+++.||+|++||++++.++.++++|+++.+.++.+.+.++++
T Consensus 242 s~a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~~~rl~~ 321 (463)
T PRK00260 242 SEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALERLYN 321 (463)
T ss_pred HHHhcCCCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 99887789999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhH
Q 012397 338 TLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSL 417 (464)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r 417 (464)
++.++.. ...|++++..+..+.+.+.++|+|+|++|.|++. |+++++.+|++++...
T Consensus 322 ~~~~~~~-----------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~-l~~lv~~~n~~~~~~~----------- 378 (463)
T PRK00260 322 ALAETAL-----------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAV-LFELAREINRALETKD----------- 378 (463)
T ss_pred HHHHhhh-----------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHhhccc-----------
Confidence 9877641 1346788889999999999999779999999999 9999999999986531
Q ss_pred HHHHHHHHHHHHHHHHhhccC
Q 012397 418 IESLRKIENEVKEVLRILGLL 438 (464)
Q Consensus 418 ~~~~~~~~~~l~~~l~lLgi~ 438 (464)
...+..+...+..++.+|||.
T Consensus 379 ~~~~~~~~~~~~~~~~ilG~~ 399 (463)
T PRK00260 379 KEAAAALAALLRALADVLGLE 399 (463)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 112445666777788899974
|
|
| >PTZ00399 cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-80 Score=659.07 Aligned_cols=416 Identities=40% Similarity=0.647 Sum_probs=377.7
Q ss_pred CcceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHH-HCCCeEEEecCCccccHHHHHH
Q 012397 16 DLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLE-HLKCEVTYVRNFTDVDDKIIRR 94 (464)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr-~~G~~V~~i~~~dd~g~~i~~~ 94 (464)
+++|+||||+||++++|.|.++++|++|+||||||+.+||||||++|.+|+++|+|| ..|++|.|+.|+||+|+||+.+
T Consensus 37 ~~~l~lyNtlt~~k~~f~p~~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~ 116 (651)
T PTZ00399 37 LTGLKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKR 116 (651)
T ss_pred CCceEEEECCCCCccccccCCCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHcCCC-hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCC----CCC
Q 012397 95 ANDLGEN-PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP----NYG 169 (464)
Q Consensus 95 a~~~g~~-~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~----~~g 169 (464)
|++.|++ +.++++.|.+.|.++++.|||.+++..+|+++|++.+++++++|+++|++|+.++++||++..++ .||
T Consensus 117 A~~~g~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg 196 (651)
T PTZ00399 117 AREEKLSIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYP 196 (651)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccchhhHH
Confidence 9999999 99999999999999999999998899999999999999999999999999999999999999987 899
Q ss_pred CCCC---ccccccccCCC-c-ccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecc
Q 012397 170 RLSG---QRLENNRAGER-V-AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (464)
Q Consensus 170 ~l~~---~~~~~~~~g~~-~-~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~ 244 (464)
+|++ .....+..|.+ + +....|++|.||++|+..++|++.|+++||.|+|+||++|++|+..++|.++|||.+|.
T Consensus 197 ~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~ 276 (651)
T PTZ00399 197 KLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGI 276 (651)
T ss_pred hhChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCC
Confidence 9985 33344445654 4 33346899999999999999999999999999999999999999999999999999999
Q ss_pred cCccccchHHHHHHhhccCC-CCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHH
Q 012397 245 DLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVL 323 (464)
Q Consensus 245 D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~ 323 (464)
|++||||.+.+|++.|+.+. ++.++|+|+|||+++|+|||||+||+|+|.|+++.||+|++|||+++.+++++++|+++
T Consensus 277 DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~dldFS~e 356 (651)
T PTZ00399 277 DLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKPMNYSDE 356 (651)
T ss_pred CCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCCCccCHH
Confidence 99999999999999999876 89999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccC--CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHH
Q 012397 324 QLDSASDAVFYIYQTLQDCEVALSPFQEH--GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 401 (464)
Q Consensus 324 ~~~~~~~~l~~l~~~~~~~~~~l~~~~~~--~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~ 401 (464)
.+.++.+...++.+.+.++.+.+.+.... ....+.|++|+..+.++.+.|.++|+++++++.|+.. |+++++.+|+|
T Consensus 357 ~l~~a~~~~~~l~n~~~rl~s~l~~~~~~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~-L~eLv~~~N~y 435 (651)
T PTZ00399 357 SMDEAIEKDKVFFNFFANVKIKLRESELTSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQA-LQKLISATNTY 435 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHH
Confidence 99999998888888888887765432110 1123567889999999999999999778999999999 99999999999
Q ss_pred hhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 402 LNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 402 ~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
++.. ...++.++..+..+|..++.+|||.++
T Consensus 436 i~~~--------~~~~~~ll~~v~~~l~~~l~ILGl~~~ 466 (651)
T PTZ00399 436 LNSG--------EQPSAPLLRSVAQYVTKILSIFGLVEG 466 (651)
T ss_pred Hhcc--------ccchHHHHHHHHHHHHHHHhcccCCcc
Confidence 9621 123566778899999999999998653
|
|
| >TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-81 Score=622.54 Aligned_cols=368 Identities=36% Similarity=0.612 Sum_probs=340.5
Q ss_pred cCCCCCcceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHH
Q 012397 11 AAPKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDK 90 (464)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~ 90 (464)
+.|+.+++|+||||++|+++.|.| +++|.+|+||||||+++||||+|++|.+|+++|+||+.|++|.|++|+||||+|
T Consensus 10 ~~~~~~~~l~lyntlt~~~~~f~p--~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDK 87 (411)
T TIGR03447 10 ALPGTGPPLRLFDTADGQVRPVEP--GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDP 87 (411)
T ss_pred CCCCCCCceEEEECCCCCeeeccC--CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHH
Confidence 346678899999999999999998 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecC----cEEEcCCCCC
Q 012397 91 IIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSP 166 (464)
Q Consensus 91 i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~----~~~~~~~~~~ 166 (464)
|+.+|+++|++|++++++|...|.++++.|||..++.++|+|++++.+++++++|+++|++|+.++ ++||++..++
T Consensus 88 Ii~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~ 167 (411)
T TIGR03447 88 LFERAERDGVDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATE 167 (411)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchh
Confidence 999999999999999999999999999999998779999999999999999999999999998886 8999999999
Q ss_pred CCCCCCCcccccccc--CCC-cccCC-cccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEe
Q 012397 167 NYGRLSGQRLENNRA--GER-VAVDS-RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 242 (464)
Q Consensus 167 ~~g~l~~~~~~~~~~--g~~-~~~~~-~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~ 242 (464)
.||.|++..++++.. +.+ ++.+. .|++|.||++||..++|++.|+++||.|+|+||+||++|+.+++|.++|||++
T Consensus 168 ~YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~G 247 (411)
T TIGR03447 168 QFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGG 247 (411)
T ss_pred ccccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccC
Confidence 999999988888765 444 55433 59999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccchHHHHHHhhccCC-CCccEEEEeeeeeeCCcccccccCCccCHHHHHHh-cCchhHHHHHhhcCCCCccCC
Q 012397 243 GIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNY 320 (464)
Q Consensus 243 G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~~~~~~~f 320 (464)
|.|++||||.+++++..|+.++ +++++|+|+|++..+|+|||||+||+|++.|+++. ++++++|||+++.++.++++|
T Consensus 248 G~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl~f 327 (411)
T TIGR03447 248 GSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQDRDW 327 (411)
T ss_pred cccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCCCCCcc
Confidence 9999999999999999998776 99999999999999999999999999999999986 999999999998899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q 012397 321 SVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINS 400 (464)
Q Consensus 321 ~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~ 400 (464)
+++.+.++.+.+.++.+++.++. .+ .+..+...+.++|+|++++|.|++. |+++++.+|.
T Consensus 328 s~e~l~~a~~~l~rl~~~~~~~~------------~~-------~~~~~~~~~~~al~dDln~p~a~~~-l~~~~~~~n~ 387 (411)
T TIGR03447 328 TDAVLAEAEARLARWRAALAATD------------AP-------DATDLIARLRQHLANDLDTPAALAA-VDNWAAAALS 387 (411)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcc------------cc-------hHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHHHh
Confidence 99999999999999888775421 00 1335567888999999999999999 9999988776
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. |
| >PRK14536 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-80 Score=632.14 Aligned_cols=382 Identities=36% Similarity=0.631 Sum_probs=346.6
Q ss_pred ceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEec----------CCccc
Q 012397 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVR----------NFTDV 87 (464)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~----------~~dd~ 87 (464)
+|+||||+++++++|.|..+++|++|+||||||+++||||+|++|.+|+++|+||..|++|.|++ ++|+|
T Consensus 2 ~l~lyntlt~~ke~f~p~~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ 81 (490)
T PRK14536 2 ALRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSG 81 (490)
T ss_pred ceEEEecCCCCeeccccCCCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCC
Confidence 38999999999999999999999999999999999999999999999999999999999999997 44555
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCC
Q 012397 88 DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPN 167 (464)
Q Consensus 88 g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~ 167 (464)
|+||+.+|+++|++|++++++|...|.++++.|||.+++.++|+++|++.+++++++|+++|++|+.++++|||+..|+.
T Consensus 82 ddKii~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~~~~ 161 (490)
T PRK14536 82 EDKMVKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPS 161 (490)
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCcccc
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccCCCcccCCcccCccccccccccc--CC-CCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecc
Q 012397 168 YGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAK--AG-EPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (464)
Q Consensus 168 ~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~--~g-~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~ 244 (464)
||.|++..++++..|.+++.+..|++|.||++||..+ .+ .++|+++||.|+|+||++|++|+.+++|..+|||++|.
T Consensus 162 YG~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~ 241 (490)
T PRK14536 162 YGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGV 241 (490)
T ss_pred hhhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccc
Confidence 9999999999888898887777899999999998754 33 57999999999999999999999999999999999999
Q ss_pred cCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHh-cCchhHHHHHhhcCCCCccCCCHH
Q 012397 245 DLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVL 323 (464)
Q Consensus 245 D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~~~~~~~f~~~ 323 (464)
|++||||.+++|++.|+.+.+++++|+|+|+++++|+|||||+||+|++.|+++. ++++++||++++.++.++++|+++
T Consensus 242 DliFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~Fs~e 321 (490)
T PRK14536 242 DHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLAFSWE 321 (490)
T ss_pred cCCCcchhhHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCCCCHH
Confidence 9999999999999999888899999999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccC--C----C-ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Q 012397 324 QLDSASDAVFYIYQTLQDCEVALSPFQEH--G----K-TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK 396 (464)
Q Consensus 324 ~~~~~~~~l~~l~~~~~~~~~~l~~~~~~--~----~-~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~ 396 (464)
.+.++.+.+.+|++++.++.......... . . .......+...+..+.+.+.++|+|++++|.|++. |+++++
T Consensus 322 ~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~-l~~~~~ 400 (490)
T PRK14536 322 ALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSE-LQKLVK 400 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHH-HHHHHH
Confidence 99999999999999988775433211000 0 0 00001112234567788999999999999999999 999999
Q ss_pred HHHH
Q 012397 397 FINS 400 (464)
Q Consensus 397 ~~n~ 400 (464)
.+|.
T Consensus 401 ~~n~ 404 (490)
T PRK14536 401 DTSV 404 (490)
T ss_pred Hhhh
Confidence 8885
|
|
| >TIGR00435 cysS cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-80 Score=633.86 Aligned_cols=399 Identities=49% Similarity=0.842 Sum_probs=359.6
Q ss_pred eeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc
Q 012397 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL 98 (464)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~ 98 (464)
|+||||+||+++.|.|..++++.+|+||||||+++||||+|++|.+|+++|+||++|++|.|++|+||+|+||+.+|+++
T Consensus 1 l~lyntlt~~~e~f~p~~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~ 80 (465)
T TIGR00435 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRAREN 80 (465)
T ss_pred CeeEeCCCCCeeccccCCCCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeec-CcEEEcCCCCCCCCCCCCcccc
Q 012397 99 GENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLE 177 (464)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~-~~~~~~~~~~~~~g~l~~~~~~ 177 (464)
|++|++++++|...|.+++++|||++++.++++++|++.+++++++|+++|++|+.+ +++|||+.+++.||+|++..++
T Consensus 81 g~~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~ 160 (465)
T TIGR00435 81 GESVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLD 160 (465)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchhccCCCCCHH
Confidence 999999999999999999999999977778899999999999999999999999998 9999999999999999998888
Q ss_pred ccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHH
Q 012397 178 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (464)
Q Consensus 178 ~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~ 257 (464)
++..|.+++.+..|++|.||++||..++|++.|+++||.|+|+||++|++|+.+++|.++|||++|.|++||||.+++++
T Consensus 161 ~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aq 240 (465)
T TIGR00435 161 QLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQ 240 (465)
T ss_pred HHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHH
Confidence 88888888887889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHH
Q 012397 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQ 337 (464)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~ 337 (464)
..++.+++|+++|+|+|+++++|+|||||+||+|++.|+++.|++|++|||+++.++.++++|+++.+.++.+.+.+|++
T Consensus 241 s~a~~g~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs~~~l~~a~~~~~rl~~ 320 (465)
T TIGR00435 241 SEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNALERLYK 320 (465)
T ss_pred HHHhcCCCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 99988889999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH-HHhhhhcccCchhhhhh
Q 012397 338 TLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN-SSLNMLKKKQPKQQQLS 416 (464)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n-~~~~~~~~~~~~~~~~~ 416 (464)
++.++........ . .+..+......+.+.+.++|+|++++|.|++. |+++++.+| ...+. .
T Consensus 321 ~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~f~~al~dDlnt~~a~~~-l~~~~~~~n~~~~~~-----------~ 382 (465)
T TIGR00435 321 ALRVLDTTLAYSG----N--QSLNKFPDEKEFEARFVEAMDDDLNTANALAV-LFELAKSINLTFVSK-----------A 382 (465)
T ss_pred HHHHHHhhhcccc----c--cccccchhHHHHHHHHHHHHhhccCHHHHHHH-HHHHHHHhhhhhcch-----------H
Confidence 9987754332110 0 01001122345678899999999999999999 999999999 43310 0
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 012397 417 LIESLRKIENEVKEVLRILGLL 438 (464)
Q Consensus 417 r~~~~~~~~~~l~~~l~lLgi~ 438 (464)
. +..+...+..+..+||++
T Consensus 383 ~---~~~~~~~~~~l~~~lg~~ 401 (465)
T TIGR00435 383 D---AALLIEHLIFLESRLGLL 401 (465)
T ss_pred H---HHHHHHHHHHHHHhcccC
Confidence 1 223445566667788854
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln). |
| >PRK14534 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-77 Score=609.29 Aligned_cols=381 Identities=31% Similarity=0.527 Sum_probs=341.3
Q ss_pred ceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccc----------
Q 012397 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDV---------- 87 (464)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~---------- 87 (464)
+|+||||+||+++.|.|. ++|.+|+||||||..+||||+|++|.+|+++|+||.+|++|.|+.++.|.
T Consensus 2 ~l~lynTltr~ke~f~p~--~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~g 79 (481)
T PRK14534 2 LLKLYNTKTKDLSELKNF--SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDG 79 (481)
T ss_pred ceEEEEcCCCCeeecccC--CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCC
Confidence 489999999999999985 79999999999999999999999999999999999999999996555444
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCC
Q 012397 88 DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPN 167 (464)
Q Consensus 88 g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~ 167 (464)
|+||+.+|+++|+++++++++|...|.++++.|||.+++..+++++|++.+++++++|+++|++|+.++++|||+.+++.
T Consensus 80 ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~~~ 159 (481)
T PRK14534 80 EDKVVKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCFKS 159 (481)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEecccccc
Confidence 88999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccc--cCCCcccCCcccCcccccccccc---cCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEe
Q 012397 168 YGRLSGQRLENNR--AGERVAVDSRKRNPADFALWKAA---KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 242 (464)
Q Consensus 168 ~g~l~~~~~~~~~--~g~~~~~~~~k~~~~d~~~w~~~---~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~ 242 (464)
||.+++.+++++. .|.+++.+..|++|.||++||.. ++++++|+++||.|+|+||++|++|+.+++|.++|||++
T Consensus 160 YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~G 239 (481)
T PRK14534 160 YGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLG 239 (481)
T ss_pred hhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEec
Confidence 9999999998876 68888887789999999999864 678899999999999999999999999999999999999
Q ss_pred cccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHh-cCchhHHHHHhhcCCCCccCCC
Q 012397 243 GIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYS 321 (464)
Q Consensus 243 G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~~~~~~~f~ 321 (464)
|+|++||||.+++|+++++.+.+++++|+|+||++++|+|||||+||++++.|+++. ++++++||++++.++.++++|+
T Consensus 240 G~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~yr~~l~Fs 319 (481)
T PRK14534 240 GVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHYRTQLKFT 319 (481)
T ss_pred ccccCCCcchhHHHHHhhhcCCCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999888899999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHH
Q 012397 322 VLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 401 (464)
Q Consensus 322 ~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~ 401 (464)
++.+.++.+.+.++++++.++...+............+.........+.+.+.++|+|++++|.|++. |+++++.+|+.
T Consensus 320 ~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~-l~~~~k~~n~~ 398 (481)
T PRK14534 320 FNNLKACKIARENMLNKLTYFYSSLDQFDLNLLNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGLAL-LWDIIKDDNLS 398 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccchhhhHHHHHHHHHHHHhhcCChHHHHHH-HHHHHHHHHHh
Confidence 99999999999999998876643332110000000001000112345667899999999999999999 99999999974
|
|
| >PRK12418 cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-76 Score=586.97 Aligned_cols=354 Identities=35% Similarity=0.587 Sum_probs=324.6
Q ss_pred ccCCCC-cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHH
Q 012397 33 TPIVRG-KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQ 111 (464)
Q Consensus 33 ~~~~~~-~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~ 111 (464)
+|.+++ ++.+|+||||||+++||||+|++|.+|+++|+||.+|++|.|++|+||+|+||+.+|+++|++|++++++|.+
T Consensus 2 ~p~~~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~ 81 (384)
T PRK12418 2 RPVAPGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIA 81 (384)
T ss_pred cCCCCCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHH
Confidence 466777 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecC----cEEEcCCCCCCCCCCCCcccccccc--CCC-
Q 012397 112 EYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSPNYGRLSGQRLENNRA--GER- 184 (464)
Q Consensus 112 ~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~----~~~~~~~~~~~~g~l~~~~~~~~~~--g~~- 184 (464)
.|.++++.|||..++.++|+|++++.+++++++|+++|++|++++ ++||++...+.||.|++..++++.. +.+
T Consensus 82 ~f~~d~~~Lni~~~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~~~~~~ 161 (384)
T PRK12418 82 LFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQFGYESGYDRATMLELFAERG 161 (384)
T ss_pred HHHHHHHHhCCCCCCccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhhcccccCCCHHHHHhhhcccc
Confidence 999999999986679999999999999999999999999999988 8999999999999999988888765 554
Q ss_pred ccc-CCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccC
Q 012397 185 VAV-DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ 263 (464)
Q Consensus 185 ~~~-~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~ 263 (464)
++. +..|++|.||++||..++|++.|+++||.|+|+||+||++|+.+++|.++|||++|.|++||||.+++++..++.+
T Consensus 162 ~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g 241 (384)
T PRK12418 162 GDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATG 241 (384)
T ss_pred cCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcC
Confidence 344 3359999999999999899999999999999999999999999999999999999999999999999999999877
Q ss_pred C-CCccEEEEeeeeeeCCcccccccCCccCHHHHHHh-cCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHHHHHH
Q 012397 264 D-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQD 341 (464)
Q Consensus 264 ~-~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~ 341 (464)
. +++++|+|+|++..+|+|||||+||+|++.++++. ++++++|||+++.+++++++|+++.+.++.+.+.++++++.+
T Consensus 242 ~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~ 321 (384)
T PRK12418 242 ERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEARLARWRAAAAL 321 (384)
T ss_pred CCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCCCCcccCHHHHHHHHHHHHHHHHHHhc
Confidence 5 99999999999999999999999999999999874 777799999998899999999999999999999998887754
Q ss_pred HHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhc
Q 012397 342 CEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 406 (464)
Q Consensus 342 ~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~ 406 (464)
.. .+ .+.++.+.+.++|+|++++|.|++. |+++++.+|.|....+
T Consensus 322 ~~------------~~-------~~~~~~~~f~~al~dDlnt~~a~~~-l~~~~~~~n~~~~~~~ 366 (384)
T PRK12418 322 PA------------GP-------DAADVVARVRAALADDLDTPGALAA-VDGWATDALEGGGDDA 366 (384)
T ss_pred cc------------cc-------hHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHHHhccCCCc
Confidence 20 00 2345678899999999999999999 9999999999975443
|
|
| >KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-76 Score=573.97 Aligned_cols=416 Identities=45% Similarity=0.741 Sum_probs=368.6
Q ss_pred CCCCCcceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHH-HCCCeEEEecCCccccHH
Q 012397 12 APKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLE-HLKCEVTYVRNFTDVDDK 90 (464)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr-~~G~~V~~i~~~dd~g~~ 90 (464)
..+.++.+++||++||+|+.|.|.++++|++|+||||+|..-||||||++|..|+|.|+|+ ..||+|.|+.++.|.|+|
T Consensus 28 ~~~~~~~L~lYNslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDK 107 (586)
T KOG2007|consen 28 NAGQPTELKLYNSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDK 107 (586)
T ss_pred CCCCCCeEEEeeccccccceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHH
Confidence 3678899999999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHH-----HcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC
Q 012397 91 IIRRAN-----DLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 165 (464)
Q Consensus 91 i~~~a~-----~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~ 165 (464)
|+.||+ +.+.++.+.-..|.++|.+++.+|++-+|+..+|.|+|++.+..++++++++|++|..++++||++..+
T Consensus 108 II~RAr~~~m~e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf 187 (586)
T KOG2007|consen 108 IIKRARKEEMGEKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKF 187 (586)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEecccc
Confidence 999997 334444444346889999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecc
Q 012397 166 P-NYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (464)
Q Consensus 166 ~-~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~ 244 (464)
+ .||+++|.. +.+.+|+....+..|++|.||++||+.++|+|+|.++||.|+|+|||+|++|+..++|..+|||.+|.
T Consensus 188 ~~~YgKL~G~~-~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~ 266 (586)
T KOG2007|consen 188 PHSYGKLVGQR-KNLQEGEGVLSDSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGI 266 (586)
T ss_pred cchhhhhcCch-hhcccCcCccccccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCcc
Confidence 8 599999754 56666766666677999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccchHHHHHHhhccC-CCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHH
Q 012397 245 DLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVL 323 (464)
Q Consensus 245 D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~ 323 (464)
|+.||||.+.+|+..|... .+|.++|+|+|+++++|.|||||++|+|++.|+++.|+|+++|++++.+.+.++++|+..
T Consensus 267 DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s 346 (586)
T KOG2007|consen 267 DLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSDS 346 (586)
T ss_pred cccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCchHH
Confidence 9999999999999999876 569999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q 012397 324 QLDSASD---AVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINS 400 (464)
Q Consensus 324 ~~~~~~~---~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~ 400 (464)
.|..+.. .++++++.++ .+.+...+.....+.|..|.+.+....++|+.+++|+++.+.++.. +.+++...|.
T Consensus 347 ~m~~a~q~e~~~~~ff~~~~---al~~~~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~-~~~lvs~~N~ 422 (586)
T KOG2007|consen 347 TMEQALQLEKSLNNFFLDVK---ALLRGAKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEA-IRELVSQGNA 422 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhccchhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHH-HHHHHhhhhH
Confidence 8876654 3444444433 2322221112345677899999999999999999999999999999 9999999999
Q ss_pred HhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhccCC
Q 012397 401 SLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLP 439 (464)
Q Consensus 401 ~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLgi~p 439 (464)
|+.... ......++.++...|..++.++|+.+
T Consensus 423 ~i~~~~-------~~~~~~~L~~I~~yIt~~l~ifG~~e 454 (586)
T KOG2007|consen 423 YIRESG-------ERPNSALLKAIASYITKLLKIFGLSE 454 (586)
T ss_pred HHHHhc-------cccchHHHHHHHHHHHHHHHHhCCCc
Confidence 997654 11234677888889999999999765
|
|
| >PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-74 Score=542.50 Aligned_cols=299 Identities=60% Similarity=1.048 Sum_probs=257.6
Q ss_pred cccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHH
Q 012397 32 FTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQ 111 (464)
Q Consensus 32 ~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~ 111 (464)
|+|.++++|++|+||||||..+||||+|++|..|+|.|+|+..|++|.++.++.|.++||+.+|++.|+++.+++++|.+
T Consensus 1 F~p~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~ 80 (300)
T PF01406_consen 1 FKPLNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEE 80 (300)
T ss_dssp ---SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred CcCCCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeec-CcEEEcCCCCCCCCCCCCccccccccCCCcccCCc
Q 012397 112 EYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSR 190 (464)
Q Consensus 112 ~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~-~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~ 190 (464)
+|.+++++|||..++.++|+|+|++.+++++++|+++|++|+.. +++||++.+++.||+|++..++++..|.+++.+..
T Consensus 81 ~f~~dm~~Lnv~~p~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~ 160 (300)
T PF01406_consen 81 EFFEDMKALNVLPPDHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYE 160 (300)
T ss_dssp HHHHHHHHTT----SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TT
T ss_pred HHHHHHHHcCCCCCccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccc
Confidence 99999999999998999999999999999999999999999998 99999999999999999999998888888877788
Q ss_pred ccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEE
Q 012397 191 KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYW 270 (464)
Q Consensus 191 k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~ 270 (464)
|++|.||++||..+.|++.|+++||.|+|+||+||++|+.+++|.++|||++|.|++||||.+.+|++.|+.++++.++|
T Consensus 161 K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~a~~W 240 (300)
T PF01406_consen 161 KRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGKPFANYW 240 (300)
T ss_dssp SSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-SEEEE
T ss_pred cCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHH
Q 012397 271 MHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD 330 (464)
Q Consensus 271 ~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~ 330 (464)
+|+|+++++|+|||||+||+++++|+++.|+++++||++++++++++++|+++.+.++.|
T Consensus 241 ~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A~n 300 (300)
T PF01406_consen 241 MHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFSEENLEEAKN 300 (300)
T ss_dssp EEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHHH-
T ss_pred HHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccCHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999998865
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B. |
| >COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-69 Score=553.56 Aligned_cols=410 Identities=19% Similarity=0.191 Sum_probs=334.1
Q ss_pred eEEEeCCCCC--CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 41 GMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 41 ~v~~~~P~p~--G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
+++||+|.|| |+|||||++++|.||++||++|++|++|.|++|+|+||++|+.+|+++|++|++++++++..+.++++
T Consensus 6 ~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~ 85 (558)
T COG0143 6 KILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFK 85 (558)
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4566665555 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCC-------------C-
Q 012397 119 DLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYG-------------R- 170 (464)
Q Consensus 119 ~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g-------------~- 170 (464)
.|+|++ |.|.||+ +|.+.+|++|++|.++|+||.++.++|||+.| ||.|| +
T Consensus 86 ~l~Isf-D~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~~ 164 (558)
T COG0143 86 ALNISF-DNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRT 164 (558)
T ss_pred HhCCcc-cccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccCc
Confidence 999995 8898887 78999999999999999999999999999884 66666 2
Q ss_pred CCCcccccc---ccCCCcccCC------------------cccCccccccccc------------ccCCCCcc-cCCCCC
Q 012397 171 LSGQRLENN---RAGERVAVDS------------------RKRNPADFALWKA------------AKAGEPSW-DSPWGP 216 (464)
Q Consensus 171 l~~~~~~~~---~~g~~~~~~~------------------~k~~~~d~~~w~~------------~~~g~~~~-~~~wg~ 216 (464)
+++.++... .+|.+.++.. ++.+| ++..... .++-.+|| +..||+
T Consensus 165 ~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~-~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGi 243 (558)
T COG0143 165 LDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNP-DFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGI 243 (558)
T ss_pred CCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCc-cccCChHHHHHHHHHHHccCcccceecCCCCCCc
Confidence 333332222 2344332211 11222 3322111 12234688 779999
Q ss_pred CCCc--------hhhHHHHH---------------HHhhcCC--CeeEEEecccCccccchHHHHHHhhccCCCCccEEE
Q 012397 217 GRPG--------WHIECSAM---------------SAHYLSS--KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWM 271 (464)
Q Consensus 217 ~~P~--------w~~~~~~~---------------~~~~~~~--~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~ 271 (464)
++|+ |+++...+ ..++|.. .-.+|++|||+++||.++|||++++++.+.|.+++.
T Consensus 244 pvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~~i~a 323 (558)
T COG0143 244 PVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPTRIFA 323 (558)
T ss_pred cCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCCCCCEEEe
Confidence 9995 87664221 2234422 123999999999999999999999999888888855
Q ss_pred EeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCc
Q 012397 272 HNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSP 348 (464)
Q Consensus 272 ~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~ 348 (464)
|||++++|+|||||+||+|++.++++.+|+|++|||+++. |.++|.+|+++.+.+.+|. .+.+.|.+.|+.+.+.+
T Consensus 324 -hg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k 402 (558)
T COG0143 324 -HGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINK 402 (558)
T ss_pred -eeeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999997 9999999999999998775 44555556666666666
Q ss_pred cccCCCc------cCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhh-hhHHH-H
Q 012397 349 FQEHGKT------ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ-LSLIE-S 420 (464)
Q Consensus 349 ~~~~~~~------~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~-~~r~~-~ 420 (464)
+.++... .+.|+.++..+.++...+.++| +.+.+++|+.. +++++...|+|++..+||...++. .+|+. +
T Consensus 403 ~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~-e~~~~~~Al~~-i~~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~v 480 (558)
T COG0143 403 YFDGVVPAAGAPDLEEDEELLALAREALEAVAEAM-EKYEFRKALEE-IMALASRANKYIDEQAPWKLAKEDKRERLATV 480 (558)
T ss_pred ccCCcCCccccccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHhhcCCCchhhccCcHHHHHHH
Confidence 5443221 1466789999999999999999 99999999999 999999999999999999976542 45655 5
Q ss_pred HHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhH
Q 012397 421 LRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHV 456 (464)
Q Consensus 421 ~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~ 456 (464)
+..+.++++.+..+|. |+|. +|++||++|+.....
T Consensus 481 l~~~~~~~r~la~ll~P~mP~-~a~ki~~~L~~~~~~ 516 (558)
T COG0143 481 LYLALELVRVLAILLYPFMPE-TAEKIWDQLGLEEDA 516 (558)
T ss_pred HHHHHHHHHHHHHHhcCcCcc-hHHHHHHHhCCcccc
Confidence 7889999999999999 9999 999999999986444
|
|
| >PLN02610 probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=539.11 Aligned_cols=411 Identities=13% Similarity=0.095 Sum_probs=324.0
Q ss_pred CcceEEEeCCCCC--CcCCcccch-hHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAY--DLSHLGHAR-AAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYL 114 (464)
Q Consensus 38 ~~~~v~~~~P~p~--G~lHiGHar-~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 114 (464)
++-.+++|+|.|| |+|||||++ +++.+|+++|++|++|++|+|++|+|+||++|+.+|.++|++|++++++|++.|.
T Consensus 15 ~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~ 94 (801)
T PLN02610 15 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHK 94 (801)
T ss_pred CCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3445666665555 999999999 5788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCC--CCC--------
Q 012397 115 VDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPN--YGR-------- 170 (464)
Q Consensus 115 ~~l~~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~--~g~-------- 170 (464)
+.++++||++ |.|.||+ +|.+.++++|.+|.++|+||++.++++||+.| ||. ||.
T Consensus 95 ~~~~~l~i~~-D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~C 173 (801)
T PLN02610 95 EVYDWFDISF-DKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQC 173 (801)
T ss_pred HHHHHcCCcc-ccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchh
Confidence 9999999996 7888877 68899999999999999999999999999884 777 652
Q ss_pred ------CCCccccccc---cCCCcccCC------------------cccCc------cc---cc-cccc--ccCCCCccc
Q 012397 171 ------LSGQRLENNR---AGERVAVDS------------------RKRNP------AD---FA-LWKA--AKAGEPSWD 211 (464)
Q Consensus 171 ------l~~~~~~~~~---~g~~~~~~~------------------~k~~~------~d---~~-~w~~--~~~g~~~~~ 211 (464)
+.+.++.+.. +|..+.... ++.++ .. .. -|.. ..+-.++|+
T Consensus 174 e~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~ 253 (801)
T PLN02610 174 EKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRD 253 (801)
T ss_pred hhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeee
Confidence 1222222221 233322110 00010 00 00 0211 123356888
Q ss_pred CCCCCCCCc----------hhhHHHHH----------HHhhcCCCee---EEEecccCccccchHHHHHHhhccCC--CC
Q 012397 212 SPWGPGRPG----------WHIECSAM----------SAHYLSSKFD---IHGGGIDLIFPHHENEIAQSCAACQD--SN 266 (464)
Q Consensus 212 ~~wg~~~P~----------w~~~~~~~----------~~~~~~~~~~---i~~~G~D~~~~h~~~~~a~~~a~~~~--~~ 266 (464)
.+||+++|. |+++...+ ...+|..+-+ +|++|+||++||.++||+++++++.+ .|
T Consensus 254 ~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~~~p 333 (801)
T PLN02610 254 LKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTMM 333 (801)
T ss_pred cCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCcCCC
Confidence 899999982 88764222 1234543324 89999999999999999999999864 56
Q ss_pred ccEEEEeeeeeeCCcccccccCCccCHHHHHHh-cCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH--HHHHHHHHHHH
Q 012397 267 VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDC 342 (464)
Q Consensus 267 ~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~ 342 (464)
.++++ |||++++|+|||||+||+|+|.++++. ||+|++||||++. +.++|.+|+++.+.+..|. .+++.|.+.|+
T Consensus 334 ~~i~~-~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~ 412 (801)
T PLN02610 334 KTISV-TEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRV 412 (801)
T ss_pred CEEEe-ccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67644 799999999999999999999999995 9999999999997 8999999999999988765 44455555555
Q ss_pred HHhcC----ccccCCC-------ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCch
Q 012397 343 EVALS----PFQEHGK-------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK 411 (464)
Q Consensus 343 ~~~l~----~~~~~~~-------~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~ 411 (464)
.+.+. ++..+.. ..+.|++++.++.++.+++.++| ++++++.|+.. ++++++.+|+|++..+||...
T Consensus 413 ~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~m-e~~~~~~Al~~-I~~l~~~~NkYIe~~kPW~L~ 490 (801)
T PLN02610 413 LSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAM-EKVKLKQGLKT-AMSISSEGNAYLQESQFWKLY 490 (801)
T ss_pred HHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCchhhh
Confidence 55444 2332221 12347899999999999999999 99999999999 999999999999999999864
Q ss_pred hhh-hhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh
Q 012397 412 QQQ-LSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL 453 (464)
Q Consensus 412 ~~~-~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~ 453 (464)
+.+ +....++..+.++|+.++.+|. |+|+ +|++||++|+.+
T Consensus 491 k~d~~~l~~vl~~~le~lr~la~LL~PfmP~-~aeeI~~~Lg~~ 533 (801)
T PLN02610 491 KEDKPSCAIVVKTSVGLVYLLACLLEPFMPS-FSKEVLKQLNLP 533 (801)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCcccH-HHHHHHHHhCCC
Confidence 433 3334567888999999999999 9999 999999999965
|
|
| >PLN02224 methionine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=524.08 Aligned_cols=403 Identities=18% Similarity=0.176 Sum_probs=313.5
Q ss_pred EEEeCC--CCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 012397 42 MYVCGV--TAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (464)
Q Consensus 42 v~~~~P--~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (464)
+++++| +|+|+|||||+++++++|+++|++|++|++|.|++|+||||++|+.+|.++|++|.++|++|+..|.+.+++
T Consensus 71 ~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 150 (616)
T PLN02224 71 FVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKD 150 (616)
T ss_pred EEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 455544 555999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCcccc----ccccCCCcccC-----
Q 012397 120 LQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLE----NNRAGERVAVD----- 188 (464)
Q Consensus 120 lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~----~~~~g~~~~~~----- 188 (464)
|||++ |.+.||+ +|.+.++++|.+|.++|+||+++.+++||+.|. .+. ...++. ...+|..+...
T Consensus 151 l~I~~-D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce-~f~--~~~~l~~~~~~~~~~~~~~~~~e~~~ 226 (616)
T PLN02224 151 LDIAY-DKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCE-EYK--DEKELLENNCCPVHQMPCVARKEDNY 226 (616)
T ss_pred cCCCC-CcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCC-CCC--CHHHHcCCCCCCCCCCcceEEecceE
Confidence 99985 8888887 589999999999999999999999999987742 111 111110 00112222110
Q ss_pred -----C--------cccCcccccc----------ccc--ccCCCCcccC-CCCCCCCc--------hhhHHHHHHH--h-
Q 012397 189 -----S--------RKRNPADFAL----------WKA--AKAGEPSWDS-PWGPGRPG--------WHIECSAMSA--H- 231 (464)
Q Consensus 189 -----~--------~k~~~~d~~~----------w~~--~~~g~~~~~~-~wg~~~P~--------w~~~~~~~~~--~- 231 (464)
. +..++ ++.. |.. ..+-.++|+. +||+++|. |+++...+.. .
T Consensus 227 ff~Ls~~~~~L~~~~~~~~-~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~~ 305 (616)
T PLN02224 227 FFALSKYQKPLEDILAQNP-RFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTE 305 (616)
T ss_pred EEEhHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHHhcc
Confidence 0 01122 1111 111 1233468874 89999984 8877533211 0
Q ss_pred -----------hcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhc
Q 012397 232 -----------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERY 300 (464)
Q Consensus 232 -----------~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~ 300 (464)
.++++.++|++|+|+++||+++|++++++.+.+.|..+++ |||++++|+|||||+||+|+|.|+++.|
T Consensus 306 ~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~~~P~~i~~-~g~l~~eG~KMSKS~GN~i~p~e~l~~y 384 (616)
T PLN02224 306 DNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLELPKMVFG-HGFLTKDGMKMGKSLGNTLEPFELVQKF 384 (616)
T ss_pred cccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCCCCCcEEEe-cccEecCCccccccCCccCCHHHHHHHc
Confidence 1235789999999999999999999999887777777755 6999999999999999999999999999
Q ss_pred CchhHHHHHhhc-CCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccCCC-----ccCCChhHHHHHHHHHHH
Q 012397 301 HPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEHGK-----TARINPAAEDCINKLRDE 372 (464)
Q Consensus 301 ~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~~~~~~~-----~~~~d~~l~~~l~~~~~~ 372 (464)
|+|++||||++. ++.+|.+|+++.+.+..|. ...+.|.+.|+.+.+.+...+.. ....+++++.++++++++
T Consensus 385 gaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~~~~~d~~l~~~l~~li~~ 464 (616)
T PLN02224 385 GPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLVEK 464 (616)
T ss_pred CcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCccccccccHHHHHHHHHHHHH
Confidence 999999999997 8899999999998766442 33333444343333333222111 134468899999999999
Q ss_pred HHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhh---hhhH-HHHHHHHHHHHHHHHHhhc-cCCCccHHHHH
Q 012397 373 FHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ---QLSL-IESLRKIENEVKEVLRILG-LLPPGAYSEVK 447 (464)
Q Consensus 373 v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~---~~~r-~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~ 447 (464)
+.++| ++++++.|+.. ++++++.+|+|++.++||...+. +..+ ...+.++.++|+.+..+|. |+|+ +||+||
T Consensus 465 v~~~m-e~~~~~~Al~~-i~el~~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~-~Ae~I~ 541 (616)
T PLN02224 465 AQTNY-ENLSLSSACEA-VLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPC-LSLRIY 541 (616)
T ss_pred HHHHH-HhccHHHHHHH-HHHHHHHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccH-HHHHHH
Confidence 99999 99999999999 99999999999999999964322 1223 4456789999999999999 9999 999999
Q ss_pred HHhhhh
Q 012397 448 TAFLVL 453 (464)
Q Consensus 448 ~~l~~~ 453 (464)
++|+.+
T Consensus 542 ~~Lg~~ 547 (616)
T PLN02224 542 SQLGYS 547 (616)
T ss_pred HHhCCC
Confidence 999975
|
|
| >PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=519.11 Aligned_cols=401 Identities=19% Similarity=0.225 Sum_probs=321.0
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++..|..++|+|||.+||||+|+++.+|+++|++|++|++|.+++|+||||++|+.+|+++|+++.+++++|...|.+++
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 80 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLW 80 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 35677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC---------------CCCCCCC-----CCc-
Q 012397 118 ADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------------SPNYGRL-----SGQ- 174 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~---------------~~~~g~l-----~~~- 174 (464)
+.+||++ |.+.+++ .|.+.+++++.+|.++|++|++++.+|||+.| |..||.- ++.
T Consensus 81 ~~l~I~~-D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~ 159 (511)
T PRK11893 81 EALNISY-DDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESY 159 (511)
T ss_pred HHhCCCc-CCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeE
Confidence 9999985 7777776 48999999999999999999999999999886 5556531 000
Q ss_pred ---------cccccccC--CCcccCC--------cccCcccccccccccCCCCcccCCCCCCCCc--------hhhHHHH
Q 012397 175 ---------RLENNRAG--ERVAVDS--------RKRNPADFALWKAAKAGEPSWDSPWGPGRPG--------WHIECSA 227 (464)
Q Consensus 175 ---------~~~~~~~g--~~~~~~~--------~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~--------w~~~~~~ 227 (464)
.+.+...+ .++..+. .+.+..|+++|+. +..||+++|+ |+.+...
T Consensus 160 f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~--------~~~WGipiP~~~~~~~~vWfda~~~ 231 (511)
T PRK11893 160 FFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRT--------NFDWGIPVPGDPKHVIYVWFDALTN 231 (511)
T ss_pred EEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCC--------CCCCCccCCCCCCceEEEEecCcHH
Confidence 01111111 0110000 0112234444431 5579999885 6543211
Q ss_pred -------------H---HHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCcc
Q 012397 228 -------------M---SAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFF 291 (464)
Q Consensus 228 -------------~---~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i 291 (464)
+ ...+| +.|+|++|+|+++||++++++++.+++.+.| +.+++|||++++|+|||||+||+|
T Consensus 232 y~s~~~~p~~~~~~~~~~~~~~--~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p-~~~~~~g~v~~~G~KMSKS~GN~i 308 (511)
T PRK11893 232 YLTALGYPDDEELLAELFNKYW--PADVHLIGKDILRFHAVYWPAFLMAAGLPLP-KRVFAHGFLTLDGEKMSKSLGNVI 308 (511)
T ss_pred HHhHhccccccccchhHHHhcC--CCcceEecccccccchhHHHHHHHhCCCCCC-CEEEeeccEEECCeeecccCCcEE
Confidence 1 12233 6899999999999999999999998865555 555778999999999999999999
Q ss_pred CHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccC-----CCccCCChhHH
Q 012397 292 TIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEH-----GKTARINPAAE 363 (464)
Q Consensus 292 ~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~~~~~-----~~~~~~d~~l~ 363 (464)
++.|+++.||+|++|||+++. ++.++++|+++.+.+..+. ..+++|.+.|+.+.+.+...+ ....+.|++++
T Consensus 309 ~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~ 388 (511)
T PRK11893 309 DPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEALL 388 (511)
T ss_pred cHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhhHHHH
Confidence 999999999999999999997 7899999999999776543 346777777666655432111 11245678999
Q ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhh-hhhHHHHHHHHHHHHHHHHHhhc-cCCCc
Q 012397 364 DCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ-QLSLIESLRKIENEVKEVLRILG-LLPPG 441 (464)
Q Consensus 364 ~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~-~~~r~~~~~~~~~~l~~~l~lLg-i~p~~ 441 (464)
..++++.+.+.++| ++++++.|+.. |+++++.+|+|++.++||...+. .+.+..++.++.++++.++.+|. |+|+
T Consensus 389 ~~l~~~~~~v~~~~-~~~~~~~a~~~-l~~l~~~~n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~- 465 (511)
T PRK11893 389 EAAAALLERVRAAM-DNLAFDKALEA-ILALVRAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPE- 465 (511)
T ss_pred HHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccch-
Confidence 99999999999999 99999999999 99999999999999999975332 23345567889999999999999 9999
Q ss_pred cHHHHHHHhhhh
Q 012397 442 AYSEVKTAFLVL 453 (464)
Q Consensus 442 ~~e~i~~~l~~~ 453 (464)
+||+||+.|+..
T Consensus 466 ~ae~i~~~L~~~ 477 (511)
T PRK11893 466 LAAKILDQLGVE 477 (511)
T ss_pred HHHHHHHHhCCC
Confidence 999999999854
|
|
| >PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-62 Score=526.36 Aligned_cols=402 Identities=16% Similarity=0.206 Sum_probs=317.8
Q ss_pred eEEEeCCCCC--CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 41 GMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 41 ~v~~~~P~p~--G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
.+++|+|.|| |++||||+|+++++|+++|++|++|++|.|++|+||||++|+.+|+++|++|++++++|.+.|.++++
T Consensus 5 ~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~ 84 (648)
T PRK12267 5 TFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWK 84 (648)
T ss_pred CEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3555555555 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcch--hHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CCCCCCCCCccccccccC
Q 012397 119 DLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLSGQRLENNRAG 182 (464)
Q Consensus 119 ~lgi~~~~~~~r~s~--~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~~~g~l~~~~~~~~~~g 182 (464)
+|||++ |.+.|+++ |.+.++++|.+|.++|++|+++++++||+.| |+.||.- ++.....
T Consensus 85 ~lgI~~-D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~----~e~~~~~ 159 (648)
T PRK12267 85 KLDISY-DKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGRE----VELVKEE 159 (648)
T ss_pred HcCCCC-CCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCc----CeEEecc
Confidence 999985 88888884 8889999999999999999999999998763 4444421 0000000
Q ss_pred CC-cccC--------CcccCcc---------ccc-cccc--ccCCCCccc-CCCCCCCCc--------hhhHHHHH-H--
Q 012397 183 ER-VAVD--------SRKRNPA---------DFA-LWKA--AKAGEPSWD-SPWGPGRPG--------WHIECSAM-S-- 229 (464)
Q Consensus 183 ~~-~~~~--------~~k~~~~---------d~~-~w~~--~~~g~~~~~-~~wg~~~P~--------w~~~~~~~-~-- 229 (464)
.. +.+. ..+.++. .+. -|.. ..+-.++|+ .+||+++|. |+++...+ +
T Consensus 160 ~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~~ 239 (648)
T PRK12267 160 SYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITAL 239 (648)
T ss_pred eEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHHHc
Confidence 00 0000 0011110 111 1322 234457887 489999984 87764322 1
Q ss_pred ----------HhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHh
Q 012397 230 ----------AHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER 299 (464)
Q Consensus 230 ----------~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~ 299 (464)
..+ +|.++|++|+|+++||.++|++++++++.++|.++.+ |||++++|+|||||+||+|+|.|+++.
T Consensus 240 ~~~~~~~~~~~~~--wp~~~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~-hg~l~~eg~KMSKS~GN~i~p~d~l~~ 316 (648)
T PRK12267 240 GYGSDDDELFKKF--WPADVHLVGKDILRFHAIYWPIMLMALGLPLPKKVFA-HGWWLMKDGKMSKSKGNVVDPEELVDR 316 (648)
T ss_pred CCCCCCchHHHhh--cccceEEEeeeecchhHHHHHHHHHhCCCCCCcEEEe-cceEEECCceecccCCcccCHHHHHHH
Confidence 112 3789999999999999999999999988778888865 699999999999999999999999999
Q ss_pred cCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccCC-----CccCCChhHHHHHHHHHH
Q 012397 300 YHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEHG-----KTARINPAAEDCINKLRD 371 (464)
Q Consensus 300 ~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~~~~~~-----~~~~~d~~l~~~l~~~~~ 371 (464)
||+|++|||+++. +.++|.+|+++.+.+..|. ..+|.|.+.|+.+.+.+...+. ...+.|++++++++++.+
T Consensus 317 ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~~~ 396 (648)
T PRK12267 317 YGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETLK 396 (648)
T ss_pred cCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHHHH
Confidence 9999999999986 8899999999999876543 3345555555544443322221 124568999999999999
Q ss_pred HHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhh--hhhHH-HHHHHHHHHHHHHHHhhc-cCCCccHHHHH
Q 012397 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ--QLSLI-ESLRKIENEVKEVLRILG-LLPPGAYSEVK 447 (464)
Q Consensus 372 ~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~--~~~r~-~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~ 447 (464)
++.++| +++++++|+.. ++++++.+|+|++..+||...+. +..++ ..+..+.++++.++.+|. |+|+ +||+||
T Consensus 397 ~v~~~~-e~~~~~~al~~-i~~~~~~~N~Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~-~ae~i~ 473 (648)
T PRK12267 397 NYEELM-EELQFSRALEE-VWKLISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPE-TSKKIF 473 (648)
T ss_pred HHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHHhCCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccch-HHHHHH
Confidence 999999 99999999999 99999999999999999975432 22333 456888999999999999 9999 999999
Q ss_pred HHhhhh
Q 012397 448 TAFLVL 453 (464)
Q Consensus 448 ~~l~~~ 453 (464)
++|+.+
T Consensus 474 ~~Lg~~ 479 (648)
T PRK12267 474 EQLGLE 479 (648)
T ss_pred HHcCCC
Confidence 999964
|
|
| >PRK00133 metG methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-62 Score=524.02 Aligned_cols=409 Identities=19% Similarity=0.176 Sum_probs=324.3
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
+..|.++.|+|||.+||||+|+++++|+++|++|++|++|.|++|+|+||++|+.+|+++|++|++++++|.+.|.++++
T Consensus 3 ~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 82 (673)
T PRK00133 3 KILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFA 82 (673)
T ss_pred CEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 33444445577799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCCC--CCc--------
Q 012397 119 DLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRL--SGQ-------- 174 (464)
Q Consensus 119 ~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~l--~~~-------- 174 (464)
.|||++ |.+.|++ +|++.++++|.+|+++|++|++++++|||+.| ||.||.. .+.
T Consensus 83 ~l~i~~-d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~ 161 (673)
T PRK00133 83 GFGISF-DNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGAT 161 (673)
T ss_pred HhCCCC-CCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhcccc
Confidence 999995 7788887 69999999999999999999999999999884 7888765 121
Q ss_pred ----ccccc---ccCCCcccCC------------------cccCcccc--------ccccc--ccCCCCcccCCC-CCCC
Q 012397 175 ----RLENN---RAGERVAVDS------------------RKRNPADF--------ALWKA--AKAGEPSWDSPW-GPGR 218 (464)
Q Consensus 175 ----~~~~~---~~g~~~~~~~------------------~k~~~~d~--------~~w~~--~~~g~~~~~~~w-g~~~ 218 (464)
++... .+|..+++.. ...++ .+ .-|.. ..+-.++|+.+| |+++
T Consensus 162 ~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~Gipv 240 (673)
T PRK00133 162 YSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSG-ELQPNVANKMKEWLEEGLQDWDISRDAPYFGFEI 240 (673)
T ss_pred CChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhCCCcccceeeeCCccceEC
Confidence 11111 1233322110 00011 00 00111 123346788889 9999
Q ss_pred Cc--------hhhHHHHH---------------HHhhcC-C--CeeEEEecccCccccchHHHHHHhhccCCCCccEEEE
Q 012397 219 PG--------WHIECSAM---------------SAHYLS-S--KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMH 272 (464)
Q Consensus 219 P~--------w~~~~~~~---------------~~~~~~-~--~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~ 272 (464)
|+ |+++...+ ...+|. . +..+|++|+|+++||.++||+++++.+.++|.++++
T Consensus 241 P~~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~~lP~~v~~- 319 (673)
T PRK00133 241 PGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYRLPTNVFA- 319 (673)
T ss_pred CCCCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCCCCCCEEee-
Confidence 84 76653211 112341 1 234999999999999999999999988887877755
Q ss_pred eeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCC-CccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCc
Q 012397 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYR-SPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSP 348 (464)
Q Consensus 273 ~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~-~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~ 348 (464)
|||++++|+|||||+||+|+|.|+++.||+|++|||+++. +.+ +|.+|+++.+....+. +.+++|.+.|+.+++.+
T Consensus 320 hg~v~~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k 399 (673)
T PRK00133 320 HGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINK 399 (673)
T ss_pred eccEEecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999987 777 8999999998765442 55667766676666544
Q ss_pred cccCCC-ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhh-hhHHHHHHHHHH
Q 012397 349 FQEHGK-TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ-LSLIESLRKIEN 426 (464)
Q Consensus 349 ~~~~~~-~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~-~~r~~~~~~~~~ 426 (464)
...+.. ..+.|++++.+++++.+++.++| ++++++.|+.. ++++++.+|+|++..+||...+.+ +.+..++..+.+
T Consensus 400 ~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-l~~l~~~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~ 477 (673)
T PRK00133 400 RFDGKLPDALADPELLEEFEAAAEKIAEAY-EAREFRKALRE-IMALADFANKYVDDNEPWKLAKQDGERLQAVCSVGLN 477 (673)
T ss_pred hcCCCCCCCcccHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHH
Confidence 332221 24678999999999999999999 99999999999 999999999999999999754332 334455788889
Q ss_pred HHHHHHHhhc-cCCCccHHHHHHHhhhh
Q 012397 427 EVKEVLRILG-LLPPGAYSEVKTAFLVL 453 (464)
Q Consensus 427 ~l~~~l~lLg-i~p~~~~e~i~~~l~~~ 453 (464)
+++.++.+|. |+|+ +||+||++|+..
T Consensus 478 ~l~~l~~lL~Pf~P~-~ae~i~~~Lg~~ 504 (673)
T PRK00133 478 LFRALAIYLKPVLPE-LAERAEAFLNLE 504 (673)
T ss_pred HHHHHHHHhhChhch-HHHHHHHHhCCC
Confidence 9999999999 9999 999999999964
|
|
| >TIGR00398 metG methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-61 Score=507.55 Aligned_cols=405 Identities=20% Similarity=0.188 Sum_probs=325.6
Q ss_pred eEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 012397 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (464)
Q Consensus 41 ~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (464)
.|..++|+|||.+||||+|+++.+|+++|++|++|++|.+++|+||||++|+.+|+++|++++++++.+.+.|.+++++|
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 81 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWL 81 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcch--hHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCCCC--C-----------
Q 012397 121 QCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRLS--G----------- 173 (464)
Q Consensus 121 gi~~~~~~~r~s~--~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~l~--~----------- 173 (464)
||++ |.+.++++ |.+.+++++.+|.++|++|+++++++||+.+ ||.||... +
T Consensus 82 gI~~-D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~ 160 (530)
T TIGR00398 82 NISF-DRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLE 160 (530)
T ss_pred CCCC-CCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCC
Confidence 9985 77777764 8899999999999999999999999999874 77776420 1
Q ss_pred -cccccc---ccCCCcccCC------------------cccCccccccc-----------cc--ccCCCCcccCC-CCCC
Q 012397 174 -QRLENN---RAGERVAVDS------------------RKRNPADFALW-----------KA--AKAGEPSWDSP-WGPG 217 (464)
Q Consensus 174 -~~~~~~---~~g~~~~~~~------------------~k~~~~d~~~w-----------~~--~~~g~~~~~~~-wg~~ 217 (464)
.++... .+|+.++... .+.++ +...| .. ..+-.++|+.. ||++
T Consensus 161 ~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGip 239 (530)
T TIGR00398 161 PTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNP-ESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIP 239 (530)
T ss_pred HHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCC-ccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCee
Confidence 111110 1233322110 01111 11111 11 12334678888 9999
Q ss_pred CCc--------hhhHHHH-HH------------HhhcCCCee-----EEEecccCccccchHHHHHHhhccCCCCccEEE
Q 012397 218 RPG--------WHIECSA-MS------------AHYLSSKFD-----IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWM 271 (464)
Q Consensus 218 ~P~--------w~~~~~~-~~------------~~~~~~~~~-----i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~ 271 (464)
+|. |+.+... ++ .++| +.+ +|++|+|+++||..+|++++++++.++|.++ +
T Consensus 240 vP~~~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w--~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~-~ 316 (530)
T TIGR00398 240 VPNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWW--NNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGLPLPTQV-F 316 (530)
T ss_pred CCCCCCcEEEEeecchHHhHhhhccccCChhhHHHhC--CCCCCceEEEEEecccchhHHHHHHHHHHhCCCCCCCEE-E
Confidence 996 4443211 11 1233 445 9999999999999999999999887777777 5
Q ss_pred EeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHH--HHHHHHHHHHHHHHhcCc
Q 012397 272 HNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD--AVFYIYQTLQDCEVALSP 348 (464)
Q Consensus 272 ~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~--~l~~l~~~~~~~~~~l~~ 348 (464)
+|||++++|+|||||+||+|+|.|+++.||+|++|||+++. +..+|++|+++.+.+..| .+.+++|++.|+.+++.+
T Consensus 317 ~~g~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~ 396 (530)
T TIGR00398 317 SHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKK 396 (530)
T ss_pred eeccEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999986 789999999999987753 467888888877666544
Q ss_pred cccC-----CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHH
Q 012397 349 FQEH-----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRK 423 (464)
Q Consensus 349 ~~~~-----~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~ 423 (464)
...+ ....+.|++++.+++++.+.+.++| ++++++.|+.. +++|++.+|+|++.++||...+.+..+..++.+
T Consensus 397 ~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-l~~l~~~~n~Yi~~~kpw~~~~~~~~~~~~~~~ 474 (530)
T TIGR00398 397 YFNGVLPSEDITDEEDKKLLKLINEALEQIDEAI-ESFEFRKALRE-IMKLADRGNKYIDENKPWELFKQSPRLKELLAV 474 (530)
T ss_pred hcCCcCCCCcccchhhHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHhcCCChhhcCChHHHHHHHHH
Confidence 3211 1124578999999999999999999 99999999999 999999999999999999864433345567789
Q ss_pred HHHHHHHHHHhhc-cCCCccHHHHHHHhhhh
Q 012397 424 IENEVKEVLRILG-LLPPGAYSEVKTAFLVL 453 (464)
Q Consensus 424 ~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~ 453 (464)
+.++++.++.+|. |+|+ +||+||+.|+..
T Consensus 475 l~~~l~~l~~ll~P~~P~-~ae~i~~~L~~~ 504 (530)
T TIGR00398 475 CSMLIRVLSILLYPIMPK-LSEKILKFLNFE 504 (530)
T ss_pred HHHHHHHHHHHHhCcccH-HHHHHHHHhCCC
Confidence 9999999999999 9999 999999999864
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma |
| >PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-59 Score=496.74 Aligned_cols=409 Identities=17% Similarity=0.136 Sum_probs=316.6
Q ss_pred cceEEEeCCCCCCcCCcccchhH-HHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAA-VSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~-l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
+..|..++|+|||.|||||++++ +.+|+++|++|++|++|.+++|+||||++|+.+|+++|+++++++++|...|.+++
T Consensus 4 ~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 4 RILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred cEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34455556677799999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCCC--CC--------
Q 012397 118 ADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRL--SG-------- 173 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~l--~~-------- 173 (464)
++|||++ |.+++++ +|.+.++++|.+|+++|++|++++.++||+.| ||.|+.. .|
T Consensus 84 ~~l~i~~-d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg~ 162 (556)
T PRK12268 84 KKLGISY-DLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGA 162 (556)
T ss_pred HHcCCcC-CCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhccc
Confidence 9999985 7888888 89999999999999999999999999999874 6776621 11
Q ss_pred ----cccccc---ccCCCcccCC----------cc-----------cCcc----ccccccc--ccCCCCcccCCCCCCCC
Q 012397 174 ----QRLENN---RAGERVAVDS----------RK-----------RNPA----DFALWKA--AKAGEPSWDSPWGPGRP 219 (464)
Q Consensus 174 ----~~~~~~---~~g~~~~~~~----------~k-----------~~~~----d~~~w~~--~~~g~~~~~~~wg~~~P 219 (464)
.++... .+|+.++... .+ .-|. .+.-|.. ..+-.++|+..||+++|
T Consensus 163 ~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP 242 (556)
T PRK12268 163 LLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP 242 (556)
T ss_pred cCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCC
Confidence 111111 1222221110 00 0000 0001111 12345677889999999
Q ss_pred --c--------hhhHHHHH-------H---------Hhhc--CCCeeEEEecccCccccchHHHHHHhhcc--CCCCccE
Q 012397 220 --G--------WHIECSAM-------S---------AHYL--SSKFDIHGGGIDLIFPHHENEIAQSCAAC--QDSNVSY 269 (464)
Q Consensus 220 --~--------w~~~~~~~-------~---------~~~~--~~~~~i~~~G~D~~~~h~~~~~a~~~a~~--~~~~~~~ 269 (464)
. |+.+.... . ..+| ..+.++++.|+|+++||..++++++++.+ .+.|..+
T Consensus 243 ~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v 322 (556)
T PRK12268 243 WPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEI 322 (556)
T ss_pred CCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCCCEe
Confidence 2 54432111 1 1234 22567999999999999999999998887 4555566
Q ss_pred EEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHH--HHHHHHHHHHHHHHhc
Q 012397 270 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD--AVFYIYQTLQDCEVAL 346 (464)
Q Consensus 270 ~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~--~l~~l~~~~~~~~~~l 346 (464)
++|||++++|+|||||+||+|+|.|++++||+|++|||+++. +..+|++|+++.+....+ .+..++|.+.|+.+++
T Consensus 323 -~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~ 401 (556)
T PRK12268 323 -VSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFI 401 (556)
T ss_pred -eccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHH
Confidence 557999999999999999999999999999999999999987 778999999999875433 2445556555555544
Q ss_pred CccccC----CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhh-hhhHHHHH
Q 012397 347 SPFQEH----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ-QLSLIESL 421 (464)
Q Consensus 347 ~~~~~~----~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~-~~~r~~~~ 421 (464)
.+.... ...++.|++++.+++++++.+.++| ++++++.|+.. +++|++.+|+|++..+||...+. .+....++
T Consensus 402 ~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~-l~~~~~~~n~yi~~~kpw~~~~~~~~~~~~~l 479 (556)
T PRK12268 402 EKYFGGIVPPGELGDEDRELIAEAEALFKEVGELL-EAGEFKKALEE-IMELAREANKYLDEKAPWKLAKTDRERAATVL 479 (556)
T ss_pred HHhcCCcCCCCcCCcccHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHHcCCChhhhcCCHHHHHHHH
Confidence 332111 1235678999999999999999999 99999999999 99999999999999999974332 22234456
Q ss_pred HHHHHHHHHHHHhhc-cCCCccHHHHHHHhhh
Q 012397 422 RKIENEVKEVLRILG-LLPPGAYSEVKTAFLV 452 (464)
Q Consensus 422 ~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~ 452 (464)
..+.++++.++.+|. |+|+ +||+||++|+.
T Consensus 480 ~~~~~~l~~~~~lL~P~~P~-~aeei~~~Lg~ 510 (556)
T PRK12268 480 YTALNLVRLLAVLLYPFLPF-SAQKIWEMLGG 510 (556)
T ss_pred HHHHHHHHHHHHHhhCccch-HHHHHHHHhCC
Confidence 778889999999999 9999 99999999986
|
|
| >KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-59 Score=448.29 Aligned_cols=411 Identities=19% Similarity=0.181 Sum_probs=324.4
Q ss_pred eEEEeCCCCC--CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 41 GMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 41 ~v~~~~P~p~--G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
+.+.|+|..| .++||||+++.+++|+++|++|++|..|.|.+|+|+||.||+..|...|.+|.++||....+|.+.++
T Consensus 40 ~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k 119 (578)
T KOG0436|consen 40 TFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWK 119 (578)
T ss_pred eeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHH
Confidence 6777778766 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCC--CCC-----ccccccccCCCcccC-
Q 012397 119 DLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR--LSG-----QRLENNRAGERVAVD- 188 (464)
Q Consensus 119 ~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~--l~~-----~~~~~~~~g~~~~~~- 188 (464)
.+||.+ +.|.|++ .|...++++|..+.++|+||..++++|||+++...+-+ +.+ .....++.|..+.+.
T Consensus 120 ~~gi~y-t~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~k 198 (578)
T KOG0436|consen 120 DAGIAY-TKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRK 198 (578)
T ss_pred HhCcch-hheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEec
Confidence 999985 8999998 68899999999999999999999999999986332221 100 011122233332211
Q ss_pred -----------------CcccCcccccccc--------cccCC----CCccc---CCCCCCCCc--------hhhHHHHH
Q 012397 189 -----------------SRKRNPADFALWK--------AAKAG----EPSWD---SPWGPGRPG--------WHIECSAM 228 (464)
Q Consensus 189 -----------------~~k~~~~d~~~w~--------~~~~g----~~~~~---~~wg~~~P~--------w~~~~~~~ 228 (464)
....|| +|.-.. ..+.| +++|+ ..||++.|+ |++++-.+
T Consensus 199 E~NY~FrLSkfqk~l~d~lrkNP-~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nY 277 (578)
T KOG0436|consen 199 EDNYFFRLSKFQKPLEDHLRKNP-RFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNY 277 (578)
T ss_pred ccceeeeHHhhhhHHHHHHhcCC-CccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhH
Confidence 122344 333210 01223 34553 379999995 98875322
Q ss_pred HH----h----------hcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHH
Q 012397 229 SA----H----------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIR 294 (464)
Q Consensus 229 ~~----~----------~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~ 294 (464)
.. . -+++|..+|++|||++.||.++|||+++++|.++|..+++ |||++.+|.|||||+||+|+|.
T Consensus 278 iSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlplP~~I~v-Hghwt~ngmKMsKSLGNvvdP~ 356 (578)
T KOG0436|consen 278 ISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLPLPKMIFV-HGHWTKNGMKMSKSLGNVVDPF 356 (578)
T ss_pred HHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCCCCccEEEE-eeeeeecceecchhhccccCHH
Confidence 11 0 1568999999999999999999999999999999999877 5999999999999999999999
Q ss_pred HHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHH-----HHHHHHHHHHHHHHhcCccccCC-----CccCCChhHH
Q 012397 295 QITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD-----AVFYIYQTLQDCEVALSPFQEHG-----KTARINPAAE 363 (464)
Q Consensus 295 dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~-----~l~~l~~~~~~~~~~l~~~~~~~-----~~~~~d~~l~ 363 (464)
+++++||+|++|||+|+. .++.|-+|+.+.+....| .+|+|.|++..-.-...+..... ........|.
T Consensus 357 ~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv 436 (578)
T KOG0436|consen 357 ELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLV 436 (578)
T ss_pred HHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccccCCcchhhccchHH
Confidence 999999999999999997 889999999999986654 47777665421101112211111 1133456789
Q ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhh----HHHHHHHHHHHHHHHHHhhc-cC
Q 012397 364 DCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS----LIESLRKIENEVKEVLRILG-LL 438 (464)
Q Consensus 364 ~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~----r~~~~~~~~~~l~~~l~lLg-i~ 438 (464)
..+.++++.+.+.+ +++.+++||.. +.++.+..|.|+++.+||....+.+. ....+..++++++.+..+|+ |+
T Consensus 437 ~~v~kl~ev~a~~~-d~f~~~~ale~-V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~ 514 (578)
T KOG0436|consen 437 DTVEKLPEVAATNY-DNFSLYSALEA-VLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVA 514 (578)
T ss_pred HHHHHhHHHHHhhc-ccccHHHHHHH-HHHHHHhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 99999999999999 99999999999 99999999999999999987543322 22334666777888888888 99
Q ss_pred CCccHHHHHHHhhhhHhHh
Q 012397 439 PPGAYSEVKTAFLVLLHVF 457 (464)
Q Consensus 439 p~~~~e~i~~~l~~~~~~~ 457 (464)
|- .+.+++++|++....+
T Consensus 515 Ps-ls~~llsqlgvsk~qr 532 (578)
T KOG0436|consen 515 PS-LSLRLLSQLGVSKDQR 532 (578)
T ss_pred ch-hHHHHHHHcCCChhhc
Confidence 97 9999999999887665
|
|
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-54 Score=455.65 Aligned_cols=428 Identities=15% Similarity=0.156 Sum_probs=324.8
Q ss_pred eecccCCC---CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHH----HcCCC-
Q 012397 30 ELFTPIVR---GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAN----DLGEN- 101 (464)
Q Consensus 30 ~~~~~~~~---~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~----~~g~~- 101 (464)
..|.|..+ .+..|.++||||+|.||||||.+..+.|+++|+.||+|++|+|+.|+|++|..++...+ ++|++
T Consensus 22 ~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r 101 (877)
T COG0525 22 GYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITR 101 (877)
T ss_pred CCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCc
Confidence 35555432 44889999999999999999999999999999999999999999999999976654443 34654
Q ss_pred -----------hHHHHHHHHHHHHHHHHhcCCCCC---CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC--
Q 012397 102 -----------PLSLSNRYCQEYLVDMADLQCLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS-- 165 (464)
Q Consensus 102 -----------~~~~~~~~~~~~~~~l~~lgi~~~---~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~-- 165 (464)
+++|.+++.+.|.+.+++||++.+ +.|+......+.+++.|.+|+++|+||++++.+.||+.|-
T Consensus 102 ~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TA 181 (877)
T COG0525 102 HDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTA 181 (877)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCccccc
Confidence 589999999999999999999953 2244444788899999999999999999999999998740
Q ss_pred ---------------------------------------------------CCCCCCCCcccc----------------c
Q 012397 166 ---------------------------------------------------PNYGRLSGQRLE----------------N 178 (464)
Q Consensus 166 ---------------------------------------------------~~~g~l~~~~~~----------------~ 178 (464)
++|..+.|..+. +
T Consensus 182 iSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~VD 261 (877)
T COG0525 182 ISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYVD 261 (877)
T ss_pred hhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeeeecCcccC
Confidence 000000000000 0
Q ss_pred cccCCCcccCCcccCcccccc-----------------------------------------------------------
Q 012397 179 NRAGERVAVDSRKRNPADFAL----------------------------------------------------------- 199 (464)
Q Consensus 179 ~~~g~~~~~~~~k~~~~d~~~----------------------------------------------------------- 199 (464)
..-|+-+...+.-+++.|+.+
T Consensus 262 ~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~ 341 (877)
T COG0525 262 PEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVG 341 (877)
T ss_pred CcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCc
Confidence 000000000000000000000
Q ss_pred ----------------c----------------------------------c-cccCCCCcccCCCCCCCCchhh-HHHH
Q 012397 200 ----------------W----------------------------------K-AAKAGEPSWDSPWGPGRPGWHI-ECSA 227 (464)
Q Consensus 200 ----------------w----------------------------------~-~~~~g~~~~~~~wg~~~P~w~~-~~~~ 227 (464)
| . ..++..++|+..||.++|.|+. +|..
T Consensus 342 ~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~ 421 (877)
T COG0525 342 HCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGN 421 (877)
T ss_pred cccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCCCc
Confidence 0 0 0012334667789999999986 3310
Q ss_pred ---------------------H-----------HHh-----hcC-----------CCeeEEEecccCccccchHHHHHHh
Q 012397 228 ---------------------M-----------SAH-----YLS-----------SKFDIHGGGIDLIFPHHENEIAQSC 259 (464)
Q Consensus 228 ---------------------~-----------~~~-----~~~-----------~~~~i~~~G~D~~~~h~~~~~a~~~ 259 (464)
. +.. .+| .|.++.+.|.|++||+...-+.+..
T Consensus 422 v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~~ 501 (877)
T COG0525 422 VVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGL 501 (877)
T ss_pred EEeCCccccchhhhccCchhcccCCcchhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhHHHHHHHHHHHH
Confidence 0 000 012 2778999999999998876666666
Q ss_pred hccC-CCCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHH
Q 012397 260 AACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIY 336 (464)
Q Consensus 260 a~~~-~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~ 336 (464)
.+.+ .||..+++ ||+|.. +|+|||||+||+|+|.|++++||+|||||++++. ..++|++|+++.+.+.+|...+||
T Consensus 502 ~~~~~~PFk~V~i-hGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlW 580 (877)
T COG0525 502 HLTGEVPFKDVYI-HGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLW 580 (877)
T ss_pred HhcCCCCccEEEE-eeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHH
Confidence 6655 58888877 599998 9999999999999999999999999999999997 899999999999999999999999
Q ss_pred HHHHHHHHhcCccccCC----CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH--HHHHHhhhhcccCc
Q 012397 337 QTLQDCEVALSPFQEHG----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKKQP 410 (464)
Q Consensus 337 ~~~~~~~~~l~~~~~~~----~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~--~~n~~~~~~~~~~~ 410 (464)
|+.+++...+.+..... ..++.|+|++.+++++++.++++| ++|++..|... |++|+. .++.|++..|+-..
T Consensus 581 Na~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~l-d~y~f~~a~~~-ly~F~W~~fcD~YlEl~K~~l~ 658 (877)
T COG0525 581 NATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEAL-DNYRFDEAARA-LYEFIWNDFCDWYLELAKPRLY 658 (877)
T ss_pred hHHHHHHhcccccCcccccccccchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHhHHHHHHHHHHHhhhhhc
Confidence 99999877664443211 125788999999999999999999 99999999999 999986 47999999887321
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 411 KQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 411 ~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
.. .+.+..+..++..+|..+++||+ |+|+ +||+|||+|....++++..+|
T Consensus 659 ~~-~~~~~~a~~tL~~vl~~~lrLLhPfmPf-iTEei~q~l~~~~si~~~~~P 709 (877)
T COG0525 659 GG-EEEKRAARATLYYVLDTLLRLLHPFMPF-ITEEIWQKLPGTESIHLASWP 709 (877)
T ss_pred Cc-HHHHHHHHHHHHHHHHHHHHHhCCCCcc-chHHHHHhcCCCCeEEeccCC
Confidence 22 44556788999999999999999 9998 999999999888888888777
|
|
| >cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=394.37 Aligned_cols=213 Identities=57% Similarity=0.990 Sum_probs=206.2
Q ss_pred eEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcC
Q 012397 20 KIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLG 99 (464)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g 99 (464)
++|||++++++.|.|..++++.+|+|||+|||++||||+|+++++|+++|++|++|++|.++.|+||+|+||+.+|+++|
T Consensus 1 ~~~~t~~~~~~~~~p~~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g 80 (213)
T cd00672 1 RLYNTLTRQKEEFVPLNPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEG 80 (213)
T ss_pred CcccCCCCceeeeecCCCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcC
Confidence 58999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCcccccc
Q 012397 100 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENN 179 (464)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~ 179 (464)
++|+++++++.+.|.++++.|||++++.++|+
T Consensus 81 ~~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt------------------------------------------------ 112 (213)
T cd00672 81 LSWKEVADYYTKEFFEDMKALNVLPPDVVPRV------------------------------------------------ 112 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCCcceee------------------------------------------------
Confidence 99999999999999999999999977888886
Q ss_pred ccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHh
Q 012397 180 RAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC 259 (464)
Q Consensus 180 ~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~ 259 (464)
||++|++|+.+++|.++|+|++|.|++|||+.+++++..
T Consensus 113 -----------------------------------------Wh~ec~am~~~~lg~~~dih~~G~Dl~fpH~~~~~a~~~ 151 (213)
T cd00672 113 -----------------------------------------WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSE 151 (213)
T ss_pred -----------------------------------------hhHHHHHHHHHHcCCCccEEeecCCCCcChHHHHHHHHH
Confidence 899999999999999999999999999999999999999
Q ss_pred hccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCC
Q 012397 260 AACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYS 321 (464)
Q Consensus 260 a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~ 321 (464)
+..+++++++|+|.|++.++|+|||||+||+|++.|+++++++|++|||+++.++.++++|+
T Consensus 152 a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 152 AATGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred HHhCCCCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCcCCCCCCC
Confidence 98777889999999999999999999999999999999999999999999999999999986
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >TIGR00422 valS valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-52 Score=460.79 Aligned_cols=421 Identities=17% Similarity=0.176 Sum_probs=317.1
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH----cCCCh-----------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND----LGENP----------- 102 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~----~g~~~----------- 102 (464)
++..|+.++|++||.|||||+++++++|+++|+.|++|++|+++.|+|+||.+|+..+++ .|.++
T Consensus 33 ~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~ 112 (861)
T TIGR00422 33 PPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREK 112 (861)
T ss_pred CeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHH
Confidence 446677778888899999999999999999999999999999999999999998877653 35554
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCCCC---CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCC--------
Q 012397 103 -LSLSNRYCQEYLVDMADLQCLPPTY---QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR-------- 170 (464)
Q Consensus 103 -~~~~~~~~~~~~~~l~~lgi~~~~~---~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~-------- 170 (464)
++++++|.+.+.+.+++||++.+-. ++....+.+.++.+|.+|+++|+||++...++||+.|...+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~ 192 (861)
T TIGR00422 113 IWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEV 192 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCcchHhHhhcccc
Confidence 6789999999999999999986311 1223378899999999999999999999999998874211100
Q ss_pred ----------CC---------------------------------------------Cccc-------cccccCCCc---
Q 012397 171 ----------LS---------------------------------------------GQRL-------ENNRAGERV--- 185 (464)
Q Consensus 171 ----------l~---------------------------------------------~~~~-------~~~~~g~~~--- 185 (464)
+. +..+ .+...|+-+
T Consensus 193 ~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~ 272 (861)
T TIGR00422 193 KGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIADEYVDMEFGTGAVKV 272 (861)
T ss_pred cceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceeeecCCCCcccCCCceEe
Confidence 00 0000 000000000
Q ss_pred -----------------------------------------------------------ccCCcc-cCc-----------
Q 012397 186 -----------------------------------------------------------AVDSRK-RNP----------- 194 (464)
Q Consensus 186 -----------------------------------------------------------~~~~~k-~~~----------- 194 (464)
...... ..|
T Consensus 273 ~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~ 352 (861)
T TIGR00422 273 TPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEP 352 (861)
T ss_pred cCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEE
Confidence 000000 000
Q ss_pred ----ccc------------------ccc------------c-cccCCCCcccCCCCCCCCchhhH-HH------------
Q 012397 195 ----ADF------------------ALW------------K-AAKAGEPSWDSPWGPGRPGWHIE-CS------------ 226 (464)
Q Consensus 195 ----~d~------------------~~w------------~-~~~~g~~~~~~~wg~~~P~w~~~-~~------------ 226 (464)
.-| .-| . ..++..++|+..||.++|.|+.. |.
T Consensus 353 ~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~ 432 (861)
T TIGR00422 353 LLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPD 432 (861)
T ss_pred EecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccchHHhh
Confidence 000 000 0 01233456778899999987631 10
Q ss_pred ---------------------------HHHH-hh------c--CCCeeEEEecccCccccchHHHHHHhhccCC-CCccE
Q 012397 227 ---------------------------AMSA-HY------L--SSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSY 269 (464)
Q Consensus 227 ---------------------------~~~~-~~------~--~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~~~ 269 (464)
.++. .+ | -+|.|+++.|+|+++||...++++..++.++ ||.++
T Consensus 433 ~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v 512 (861)
T TIGR00422 433 DKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEV 512 (861)
T ss_pred hhhccCCcccEEECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheE
Confidence 0000 00 0 1378999999999999999999988888665 55888
Q ss_pred EEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012397 270 WMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALS 347 (464)
Q Consensus 270 ~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~ 347 (464)
++ ||+++. +|+|||||+||+|+|.|++++||+|++|||+++. +.++|++|+++.+.+.++.+.+|+|+.+++...+.
T Consensus 513 ~~-hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~ 591 (861)
T TIGR00422 513 YI-HGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLS 591 (861)
T ss_pred EE-eeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66 599997 9999999999999999999999999999999987 66999999999999988889999997766655443
Q ss_pred ccc--c--CCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--HHHHHHhhhhcccCchhhhhhHHHHH
Q 012397 348 PFQ--E--HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESL 421 (464)
Q Consensus 348 ~~~--~--~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~~~~~~~~~~~~~~~r~~~~ 421 (464)
... . .......|+|++.+++++++.+.++| ++|+++.|+.. +++|+ ..+|+|++..++|......+.+....
T Consensus 592 ~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~~~f~~A~~~-l~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~ 669 (861)
T TIGR00422 592 DDLELSGGEEKLSLADRWILSKLNRTIKEVRKAL-DKYRFAEAAKA-LYEFIWNDFCDWYIELVKYRLYNGNEAEKKAAR 669 (861)
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHHhHHHHcCCCcHHHHHHH
Confidence 321 0 01124578999999999999999999 99999999999 99997 57899999999975322234456678
Q ss_pred HHHHHHHHHHHHhhc-cCCCccHHHHHHHhhh-hHhHhcCCCC
Q 012397 422 RKIENEVKEVLRILG-LLPPGAYSEVKTAFLV-LLHVFFDDSP 462 (464)
Q Consensus 422 ~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~-~~~~~~~~~~ 462 (464)
.++.++|+.++.+|+ |+|+ +||+||+.|+. ..+++++.+|
T Consensus 670 ~~l~~~l~~~~~lL~Pf~P~-itEelw~~L~~~~~si~~~~~P 711 (861)
T TIGR00422 670 DTLYYVLDKALRLLHPFMPF-ITEEIWQHFKEGADSIMLQSYP 711 (861)
T ss_pred HHHHHHHHHHHHHHhhhhhH-HHHHHHHhCcccCCceeecCCC
Confidence 899999999999999 9999 99999999974 3578888888
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase. |
| >PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=429.28 Aligned_cols=293 Identities=24% Similarity=0.253 Sum_probs=218.7
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
|.++.|+|||+|||||+++++.||+++|++|++|++|.+++|+|+||++|+.+|+++|++|++++++++..|++.++.+|
T Consensus 3 ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~ 82 (391)
T PF09334_consen 3 ITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALN 82 (391)
T ss_dssp EEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT
T ss_pred EecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 33445677799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCC--------------CCC
Q 012397 122 CLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGR--------------LSG 173 (464)
Q Consensus 122 i~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~--------------l~~ 173 (464)
|++ |.|.|++ +|.+.++++|++|.++|++|+++.++|||+.+ ||.||. +..
T Consensus 83 I~~-D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~~~ 161 (391)
T PF09334_consen 83 ISY-DRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPLEP 161 (391)
T ss_dssp ----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBEEC
T ss_pred CCC-cceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCccc
Confidence 996 8888887 78899999999999999999999999999885 776661 111
Q ss_pred ccccccc---cCCCcccC----------Cc--------ccCcccccccccc---------cCC----CCcccCCCCCCCC
Q 012397 174 QRLENNR---AGERVAVD----------SR--------KRNPADFALWKAA---------KAG----EPSWDSPWGPGRP 219 (464)
Q Consensus 174 ~~~~~~~---~g~~~~~~----------~~--------k~~~~d~~~w~~~---------~~g----~~~~~~~wg~~~P 219 (464)
.++.+.. +|....+. .+ ..++ ++ |... +.| .++++.+||+++|
T Consensus 162 ~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~-~~--~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP 238 (391)
T PF09334_consen 162 EELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNP-DF--PPPRVREIVRNWLKEGLPDLSISRPLDWGIPVP 238 (391)
T ss_dssp CCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHST-TS--SHHHHHHHHHHHHHT----EE-ECTTSSSEEET
T ss_pred ccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCC-CC--CChhHHHHHHHHhhcccCceeeecCCCCcceee
Confidence 2222221 23322111 00 0010 11 2110 122 2467789999999
Q ss_pred c--------hhhHHHHHH----------------Hhhc---CCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEE
Q 012397 220 G--------WHIECSAMS----------------AHYL---SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMH 272 (464)
Q Consensus 220 ~--------w~~~~~~~~----------------~~~~---~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~ 272 (464)
+ |++++..+. .++| +.+-.+|++|+|+++||.++||++++|.+.+.|.++++
T Consensus 239 ~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~~lP~~i~~- 317 (391)
T PF09334_consen 239 GDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGLPLPRRIVV- 317 (391)
T ss_dssp TEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB---SEEEE-
T ss_pred ccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccCCCCCEEEe-
Confidence 4 887653221 2244 12456999999999999999999999988788887755
Q ss_pred eeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH-----HHHHHHHH
Q 012397 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA-----VFYIYQTL 339 (464)
Q Consensus 273 ~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~-----l~~l~~~~ 339 (464)
|||++++|+|||||+||+|++.|+++.+|+|++||||++. +..+|.+|+++.+.+..|. ++||.+|+
T Consensus 318 ~~~~~~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 318 HGFLTLDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp E--EEETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred eeeEEECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 6999999999999999999999999999999999999997 8899999999999988764 77777764
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A .... |
| >PRK13208 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=453.95 Aligned_cols=417 Identities=15% Similarity=0.158 Sum_probs=312.6
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH-cCCChH------------H
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-LGENPL------------S 104 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~-~g~~~~------------~ 104 (464)
++..+..++|+|||.|||||+++++++|+++|++|++|++|.++.|+|+||.+|+..+++ .|+++. +
T Consensus 38 ~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~ 117 (800)
T PRK13208 38 PVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRE 117 (800)
T ss_pred CcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHH
Confidence 344555557888899999999999999999999999999999999999999999999987 488766 6
Q ss_pred HHHHHHHHHHHHHHhcCCCCC-CCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCcccc----
Q 012397 105 LSNRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLE---- 177 (464)
Q Consensus 105 ~~~~~~~~~~~~l~~lgi~~~-~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~---- 177 (464)
+++++.+.+.++++++|++.+ +.+.+|. +|.+.++.+|.+|.++|+||++...++||+.+...+. ..+++
T Consensus 118 ~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Ls---d~ev~~~~~ 194 (800)
T PRK13208 118 LTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIA---QAEVEYRER 194 (800)
T ss_pred HHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCccc---hhhhccccc
Confidence 999999999999999999853 1333443 7889999999999999999999999999887421110 00000
Q ss_pred -------------------------------------------------------------------ccccCC-------
Q 012397 178 -------------------------------------------------------------------NNRAGE------- 183 (464)
Q Consensus 178 -------------------------------------------------------------------~~~~g~------- 183 (464)
+...|+
T Consensus 195 ~~~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~p 274 (800)
T PRK13208 195 EGKLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICT 274 (800)
T ss_pred cceEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCccCCCCCcceEEeCC
Confidence 000000
Q ss_pred -------------------------------------------------------CcccCCcc---------cCc-----
Q 012397 184 -------------------------------------------------------RVAVDSRK---------RNP----- 194 (464)
Q Consensus 184 -------------------------------------------------------~~~~~~~k---------~~~----- 194 (464)
.+...... ..+
T Consensus 275 ~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~ 354 (800)
T PRK13208 275 FGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILV 354 (800)
T ss_pred CCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEec
Confidence 00000000 000
Q ss_pred --cccc----------------------------cccc-cc-CCCCcccCCCCCCCCchhhH-H----------------
Q 012397 195 --ADFA----------------------------LWKA-AK-AGEPSWDSPWGPGRPGWHIE-C---------------- 225 (464)
Q Consensus 195 --~d~~----------------------------~w~~-~~-~g~~~~~~~wg~~~P~w~~~-~---------------- 225 (464)
.-|. -|.. .. +..++|+..||.++|.|+.. |
T Consensus 355 ~~qwfl~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~~~ 434 (800)
T PRK13208 355 TRQWFIKVLDLKEELLERGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVDPT 434 (800)
T ss_pred cceeeEeCHHHHHHHHHhhcCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhhccCch
Confidence 0000 0000 01 34456778899999976521 0
Q ss_pred ---------H--------------------H---HH-Hh------hc--CCCeeEEEecccCccccchHHHHHHhhccCC
Q 012397 226 ---------S--------------------A---MS-AH------YL--SSKFDIHGGGIDLIFPHHENEIAQSCAACQD 264 (464)
Q Consensus 226 ---------~--------------------~---~~-~~------~~--~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~ 264 (464)
. . .+ .. .+ -+|.|+++.|+|++++|....+++..++.+.
T Consensus 435 ~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~ 514 (800)
T PRK13208 435 KDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGK 514 (800)
T ss_pred hhccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCC
Confidence 0 0 00 00 00 1378999999999999998888877776654
Q ss_pred -CCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHHHHHHH
Q 012397 265 -SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDC 342 (464)
Q Consensus 265 -~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~ 342 (464)
||.++++ ||+++. +|+|||||+||+|+|.|++++||+|++|||+++.++++|++|+++.+.+..+.+.+|+|+++++
T Consensus 515 ~Pf~~v~~-hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~ 593 (800)
T PRK13208 515 LPWKNIMI-SGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASRFV 593 (800)
T ss_pred CCcceEEE-eeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcCCCCCCceecHHHHHHHHHHHHHHHHHHHHH
Confidence 6678755 699986 9999999999999999999999999999999966999999999999998888899999987765
Q ss_pred HHhcCccc--cCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH--HHHHHhhhhcccCchh-hhhhH
Q 012397 343 EVALSPFQ--EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKKQPKQ-QQLSL 417 (464)
Q Consensus 343 ~~~l~~~~--~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~--~~n~~~~~~~~~~~~~-~~~~r 417 (464)
........ ........|+|++++++++++++.++| ++++++.|++. +++++. .+|.|++..++|.... ..+.+
T Consensus 594 ~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~A~~~-i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~ 671 (800)
T PRK13208 594 LHFSADPEPDKAEVLEPLDRWILAKLAKVVEKATEAL-ENYDFAKALEE-IESFFWHVFCDDYLELVKSRAYGEDEEEEQ 671 (800)
T ss_pred HhcccccccCccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHhhHHHHHHhhHHhcCCCCcHHH
Confidence 53221100 001124568999999999999999999 89999999999 999986 4899999998864211 12224
Q ss_pred HHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 418 IESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 418 ~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
...+.++.++|+.++.+|+ |+|+ +||+||+.|+ .-++++..||
T Consensus 672 ~~~~~~l~~~l~~l~~LLaPf~P~-iaEelw~~L~-~~si~~~~wP 715 (800)
T PRK13208 672 KSARYTLYTVLDTLLRLLAPFLPF-ITEEVWSWLY-GGSVHRASWP 715 (800)
T ss_pred HHHHHHHHHHHHHHHHHhcccchh-hHHHHHHhCC-CCceEeccCC
Confidence 5667889999999999999 9999 9999999998 3467777776
|
|
| >PRK05729 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=445.58 Aligned_cols=417 Identities=14% Similarity=0.143 Sum_probs=305.6
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHH----HHHcCCCh-----------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRR----ANDLGENP----------- 102 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~----a~~~g~~~----------- 102 (464)
++..+..++|++||.|||||+++.++.|+++|+.|++|++|+|+.|+|+||.+++.+ +.+.|+++
T Consensus 36 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~ 115 (874)
T PRK05729 36 KPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEK 115 (874)
T ss_pred CCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHH
Confidence 345666678888899999999999999999999999999999999999999865443 33447664
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCCC---CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCC------------
Q 012397 103 -LSLSNRYCQEYLVDMADLQCLPPT---YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP------------ 166 (464)
Q Consensus 103 -~~~~~~~~~~~~~~l~~lgi~~~~---~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~------------ 166 (464)
++|+++|.+.+.+++++||++.+- .++....+.+.++++|.+|+++|+||++...++||+.+..
T Consensus 116 ~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~ 195 (874)
T PRK05729 116 VWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEV 195 (874)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhcccccc
Confidence 456999999999999999998531 2223337889999999999999999999999999987411
Q ss_pred ------------------------------------------------------CCCC----CCCccccccccCCCc---
Q 012397 167 ------------------------------------------------------NYGR----LSGQRLENNRAGERV--- 185 (464)
Q Consensus 167 ------------------------------------------------------~~g~----l~~~~~~~~~~g~~~--- 185 (464)
-+|+ +.+ +..+...|+-+
T Consensus 196 ~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~~-~~V~~~~GTG~V~~ 274 (874)
T PRK05729 196 KGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPLVGREIPIIAD-EYVDPEFGTGAVKI 274 (874)
T ss_pred cceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCCCCCeeeEecC-ccCCCCCCCcceEe
Confidence 0110 000 00000000000
Q ss_pred -----------------------------------------------------------ccCCccc-Cc-----------
Q 012397 186 -----------------------------------------------------------AVDSRKR-NP----------- 194 (464)
Q Consensus 186 -----------------------------------------------------------~~~~~k~-~~----------- 194 (464)
..+.+.. .|
T Consensus 275 ~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~ 354 (874)
T PRK05729 275 TPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEP 354 (874)
T ss_pred cCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEE
Confidence 0000000 00
Q ss_pred ----c------c-------------cc-----------ccc-cccCCCCcccCCCCCCCCchhhHH-------------H
Q 012397 195 ----A------D-------------FA-----------LWK-AAKAGEPSWDSPWGPGRPGWHIEC-------------S 226 (464)
Q Consensus 195 ----~------d-------------~~-----------~w~-~~~~g~~~~~~~wg~~~P~w~~~~-------------~ 226 (464)
. + .. -|. ..++..++|+..||.++|.|+..- .
T Consensus 355 ~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~v~~~~~~~~~ 434 (874)
T PRK05729 355 YLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDEDGEVYVGREEPEARE 434 (874)
T ss_pred EecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCCCcEEeCCccccccc
Confidence 0 0 00 000 012234567788999999775310 0
Q ss_pred -----------------H---HHH-h------hc--CCCeeEEEecccCccccchHHHHHHhhccCC-CCccEEEEeeee
Q 012397 227 -----------------A---MSA-H------YL--SSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHV 276 (464)
Q Consensus 227 -----------------~---~~~-~------~~--~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v 276 (464)
. ++. . .+ -+|.|+++.|+|++++|.....++..++.+. |+.++++ ||+|
T Consensus 435 ~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~-hG~v 513 (874)
T PRK05729 435 KALLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYI-HGLV 513 (874)
T ss_pred ccCeEeCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEE-eeeE
Confidence 0 000 0 01 1378999999999887665544444444444 6678877 5999
Q ss_pred ee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC-
Q 012397 277 TN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG- 353 (464)
Q Consensus 277 ~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~- 353 (464)
+. +|+|||||+||+|+|.|++++||+|++|||+++. ++++|++|+++.+.+..+.+++|+|+.+++...+.+.....
T Consensus 514 ~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~ 593 (874)
T PRK05729 514 RDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGEL 593 (874)
T ss_pred ECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccc
Confidence 95 9999999999999999999999999999999987 88999999999999999999999998776654443332111
Q ss_pred ----CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--HHHHHHhhhhcccCchhhhhhHHHHHHHHHHH
Q 012397 354 ----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENE 427 (464)
Q Consensus 354 ----~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 427 (464)
.....|+|++.+++++++.+.++| ++|+++.|+.. |++|+ ..+|.|++..++|.. + +.+.....++.++
T Consensus 594 ~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~a~~~-l~~f~~~~~~~~Yle~~k~~l~-~--~~~~~~~~~l~~~ 668 (874)
T PRK05729 594 PDPEELSLADRWILSRLNRTVAEVTEAL-DKYRFDEAARA-LYEFIWNEFCDWYLELAKPVLQ-E--AAKRATRATLAYV 668 (874)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh-h--hHHHHHHHHHHHH
Confidence 124568999999999999999999 99999999999 99998 478999999999843 1 2255677899999
Q ss_pred HHHHHHhhc-cCCCccHHHHHHHhhhh---HhHhcCCCC
Q 012397 428 VKEVLRILG-LLPPGAYSEVKTAFLVL---LHVFFDDSP 462 (464)
Q Consensus 428 l~~~l~lLg-i~p~~~~e~i~~~l~~~---~~~~~~~~~ 462 (464)
++.++.+|+ |+|+ +||+||+.|+.- .++++..+|
T Consensus 669 l~~~~~lL~Pf~Pf-itEelw~~l~~~~~~~si~~~~~P 706 (874)
T PRK05729 669 LEQILRLLHPFMPF-ITEELWQKLAPLGIEESIMLAPWP 706 (874)
T ss_pred HHHHHHHHcccchh-hHHHHHHhcccCCCCCceeecCCC
Confidence 999999999 9999 999999999742 257777777
|
|
| >PRK14900 valS valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=442.68 Aligned_cols=417 Identities=14% Similarity=0.143 Sum_probs=302.7
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH-----cCCC-----------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-----LGEN----------- 101 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~-----~g~~----------- 101 (464)
++..|+.++|++||.|||||++++++.|+++||+|++|++|+|+.|+|+||.+++...++ .|.+
T Consensus 48 ~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~ 127 (1052)
T PRK14900 48 PPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLE 127 (1052)
T ss_pred CCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHH
Confidence 456777788999999999999999999999999999999999999999999998775543 2333
Q ss_pred -hHHHHHHHHHHHHHHHHhcCCCCCC---CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCC-------CC--
Q 012397 102 -PLSLSNRYCQEYLVDMADLQCLPPT---YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP-------NY-- 168 (464)
Q Consensus 102 -~~~~~~~~~~~~~~~l~~lgi~~~~---~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~-------~~-- 168 (464)
+++|++++.+.+.+++++||++.+- .++...++.+.++.+|.+|+++|++|++...++||+.|-. .+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e 207 (1052)
T PRK14900 128 RVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEE 207 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhcccC
Confidence 4668999999999999999998531 2233347889999999999999999999999999987410 00
Q ss_pred ---CC---------------------------------------------------CCCcc--------ccccccCCCcc
Q 012397 169 ---GR---------------------------------------------------LSGQR--------LENNRAGERVA 186 (464)
Q Consensus 169 ---g~---------------------------------------------------l~~~~--------~~~~~~g~~~~ 186 (464)
|. +.+.. ..+...|+-+.
T Consensus 208 ~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V 287 (1052)
T PRK14900 208 AHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGTGAV 287 (1052)
T ss_pred CCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCCCeE
Confidence 00 00000 00000010000
Q ss_pred cCCcccCccccc------------------------------------------------------------cccc----
Q 012397 187 VDSRKRNPADFA------------------------------------------------------------LWKA---- 202 (464)
Q Consensus 187 ~~~~k~~~~d~~------------------------------------------------------------~w~~---- 202 (464)
....-+.+.||. .|+.
T Consensus 288 ~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~i 367 (1052)
T PRK14900 288 KVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATIL 367 (1052)
T ss_pred EecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceE
Confidence 000000000000 0000
Q ss_pred ---------------------------------------------ccCCCCcccCCCCCCCCchhhH-------------
Q 012397 203 ---------------------------------------------AKAGEPSWDSPWGPGRPGWHIE------------- 224 (464)
Q Consensus 203 ---------------------------------------------~~~g~~~~~~~wg~~~P~w~~~------------- 224 (464)
..+..++|+..||.++|.|+..
T Consensus 368 e~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~~~~~v~~~~~~~ 447 (1052)
T PRK14900 368 EPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPDGHVTVARETPEA 447 (1052)
T ss_pred EEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCCCcEEeccccccc
Confidence 1123346677899999988521
Q ss_pred ---H--------------------HHHHH-hh------c--CCCeeEEEecccCccccchHHHHHHhhcc----CC-CCc
Q 012397 225 ---C--------------------SAMSA-HY------L--SSKFDIHGGGIDLIFPHHENEIAQSCAAC----QD-SNV 267 (464)
Q Consensus 225 ---~--------------------~~~~~-~~------~--~~~~~i~~~G~D~~~~h~~~~~a~~~a~~----~~-~~~ 267 (464)
| ..++. .+ | .+|.|++++|+|++++ |++++++.+ +. ||.
T Consensus 448 ~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~~----W~a~~l~~~~~~~~~~Pfk 523 (1052)
T PRK14900 448 CSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIFF----WVARMMMMGLHFMGEVPFR 523 (1052)
T ss_pred ccccCccceecCCceEEEEEcCChHHHHHHcCCCchHHHHhhCCchhhcccccHHhH----HHHHHHHHHHHhcCCCccc
Confidence 0 00000 00 1 1378999999998765 555554432 33 557
Q ss_pred cEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 012397 268 SYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVA 345 (464)
Q Consensus 268 ~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~ 345 (464)
.+++ |||++. +|+|||||+||+|+|.|+++.||+|++|||+++. +.++|++|+++.+....+.+.+|+|..+.+...
T Consensus 524 ~V~~-hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~ 602 (1052)
T PRK14900 524 TVYL-HPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMN 602 (1052)
T ss_pred eeEe-cccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7766 699998 9999999999999999999999999999999987 899999999999988888888999966555444
Q ss_pred cCcccc-CC-----CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--HHHHHHhhhhcccCchhhhhhH
Q 012397 346 LSPFQE-HG-----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSL 417 (464)
Q Consensus 346 l~~~~~-~~-----~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~~~~~~~~~~~~~~~r 417 (464)
+..+.. .. .....|+|++.+++.++.++.++| ++|+++.|+.. +++|+ ..+|+|++..+++........+
T Consensus 603 ~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~-e~y~f~~A~~~-i~~f~~~~~~n~Yie~~k~~l~~~~~~~~ 680 (1052)
T PRK14900 603 LSGYQERGEDPARLARTPADRWILARLQRAVNETVEAL-EAFRFNDAANA-VYAFVWHELCDWYIELAKEALASEDPEAR 680 (1052)
T ss_pred hhccCcccccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHhhhHHHHHhccHhhccCCHHHH
Confidence 433311 11 124568999999999999999999 99999999999 99997 4789999998875321122234
Q ss_pred HHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh-------HhHhcCCCC
Q 012397 418 IESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL-------LHVFFDDSP 462 (464)
Q Consensus 418 ~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~-------~~~~~~~~~ 462 (464)
.....++.++|+.++.+|+ |+|+ +||+||+.|+.- .+++++.||
T Consensus 681 ~~~~~~L~~~L~~l~~LLaPfmP~-~aEeiw~~L~~~~~~~~~~~SV~~~~wP 732 (1052)
T PRK14900 681 RSVQAVLVHCLQTSYRLLHPFMPF-ITEELWHVLRAQVGASAWADSVLAAEYP 732 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHH-HHHHHHHHhccccccCCCCCceeecCCC
Confidence 4566788999999999999 9999 999999999641 468888887
|
|
| >PLN02943 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=430.62 Aligned_cols=417 Identities=15% Similarity=0.121 Sum_probs=303.5
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHH----HcCCC------------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAN----DLGEN------------ 101 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~----~~g~~------------ 101 (464)
++-.+..++|+++|.|||||++++++.|+++|+.|++|++|+|+.|+|++|.+++.+.+ +.|++
T Consensus 88 ~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~ 167 (958)
T PLN02943 88 DPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKR 167 (958)
T ss_pred CCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHH
Confidence 34555555789999999999999999999999999999999999999999998866443 34654
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCC---CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC-------------
Q 012397 102 PLSLSNRYCQEYLVDMADLQCLPPT---YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------- 165 (464)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~lgi~~~~---~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~------------- 165 (464)
++++++++.+.+.+.+++||++.+- .++....+.+.+++.|.+|+++|+||++...++||+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~ 247 (958)
T PLN02943 168 VWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 247 (958)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcccc
Confidence 4678899999999999999998531 222233788999999999999999999999999998841
Q ss_pred ---------C--C-C-CC-------------------------------------CC-Cccc-------cccccCCCccc
Q 012397 166 ---------P--N-Y-GR-------------------------------------LS-GQRL-------ENNRAGERVAV 187 (464)
Q Consensus 166 ---------~--~-~-g~-------------------------------------l~-~~~~-------~~~~~g~~~~~ 187 (464)
+ . - .. +. ++.+ .+...|+-+..
T Consensus 248 ~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~ 327 (958)
T PLN02943 248 PGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLK 327 (958)
T ss_pred cccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCcccCCCCCceEE
Confidence 0 0 0 00 00 0000 00000000000
Q ss_pred CCcccCccccc--------------------------------------------------------cccc---------
Q 012397 188 DSRKRNPADFA--------------------------------------------------------LWKA--------- 202 (464)
Q Consensus 188 ~~~k~~~~d~~--------------------------------------------------------~w~~--------- 202 (464)
...-+.+.||. .|+.
T Consensus 328 ~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~ 407 (958)
T PLN02943 328 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVS 407 (958)
T ss_pred eCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEec
Confidence 00000000000 0000
Q ss_pred ----------------------------------------ccCCCCcccCCCCCCCCchhhH---HHH------------
Q 012397 203 ----------------------------------------AKAGEPSWDSPWGPGRPGWHIE---CSA------------ 227 (464)
Q Consensus 203 ----------------------------------------~~~g~~~~~~~wg~~~P~w~~~---~~~------------ 227 (464)
.++..++|+..||.++|.|+++ |..
T Consensus 408 ~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~ 487 (958)
T PLN02943 408 KQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEAL 487 (958)
T ss_pred cceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHH
Confidence 0122345677899999999852 110
Q ss_pred ------------HHH--h--------------hcC------------CCeeEEEecccCccccchHHHHHHhhcc----C
Q 012397 228 ------------MSA--H--------------YLS------------SKFDIHGGGIDLIFPHHENEIAQSCAAC----Q 263 (464)
Q Consensus 228 ------------~~~--~--------------~~~------------~~~~i~~~G~D~~~~h~~~~~a~~~a~~----~ 263 (464)
+.. . .+| +|.|+++.|+|+++| |++++.+.+ +
T Consensus 488 ~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~f----W~a~m~~~~~~~~~ 563 (958)
T PLN02943 488 EKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFF----WVARMVMMGIEFTG 563 (958)
T ss_pred HHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHH----HHHHHHHhhhhhcC
Confidence 000 0 011 378999999998755 666654433 3
Q ss_pred C-CCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHHHHHH
Q 012397 264 D-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQD 341 (464)
Q Consensus 264 ~-~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~ 341 (464)
. |+.++++| |+++. +|+|||||+||+|+|.|++++||+|++|||+++.++++|++|+++.+.+..+.+.+|+|+.++
T Consensus 564 ~~Pf~~v~~h-g~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf 642 (958)
T PLN02943 564 TVPFSYVYLH-GLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKF 642 (958)
T ss_pred CCChheEEEe-ccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 3 67889885 78875 999999999999999999999999999999998877999999999999988889999999888
Q ss_pred HHHhcCcc-------------ccCC----CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--HHHHHHh
Q 012397 342 CEVALSPF-------------QEHG----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSL 402 (464)
Q Consensus 342 ~~~~l~~~-------------~~~~----~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~ 402 (464)
+.+.+... .+.. .....|+|++.+++++++++.++| ++|+++.|+.. +++|+ ..+|.|+
T Consensus 643 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~v~~~~-e~y~f~~A~~~-i~~f~~~~~~d~Yi 720 (958)
T PLN02943 643 VLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSY-DKYFFGDVGRE-IYDFFWSDFADWYI 720 (958)
T ss_pred HHhccccccccccccccccccCCccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcChhHHHHH-HHHHHHHHHHHHHH
Confidence 76654211 0110 123568999999999999999999 99999999999 99995 6789999
Q ss_pred hhhcccCchh-hhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhh-hHhHhcCCCC
Q 012397 403 NMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLV-LLHVFFDDSP 462 (464)
Q Consensus 403 ~~~~~~~~~~-~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~-~~~~~~~~~~ 462 (464)
+..+++...+ ....+.....++.++++.++.+|+ |+|+ +||+||+.|+. ..+++++.||
T Consensus 721 E~~Kprl~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPf-itEELwq~L~~~~~si~~~~wP 782 (958)
T PLN02943 721 EASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPF-VTEELWQALPYRKEALIVSPWP 782 (958)
T ss_pred HhccHhhccCCchHHHHHHHHHHHHHHHHHHHHHhCcchh-HHHHHHHHcCCCCCceeecCCC
Confidence 9999864221 123355677888999999999999 9999 99999999963 2367777777
|
|
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=429.27 Aligned_cols=417 Identities=16% Similarity=0.162 Sum_probs=309.1
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc------CCChH-------HHH
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL------GENPL-------SLS 106 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~------g~~~~-------~~~ 106 (464)
..+..++|++||.|||||+++.++.|+++|+.|++|++|.|+.|+|.||.+|+.+++++ ++++. +++
T Consensus 51 f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~ 130 (912)
T PRK05743 51 FILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYA 130 (912)
T ss_pred EEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHH
Confidence 44455567777999999999999999999999999999999999999999999999774 55654 599
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCCCc--chhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC------------------
Q 012397 107 NRYCQEYLVDMADLQCLPP-TYQPRV--SDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------------ 165 (464)
Q Consensus 107 ~~~~~~~~~~l~~lgi~~~-~~~~r~--s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~------------------ 165 (464)
+++.+.+.+++++||+..+ +....| .++.+.++++|.+|+++|++|++...++||+.+-
T Consensus 131 ~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~~ 210 (912)
T PRK05743 131 LEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSI 210 (912)
T ss_pred HHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccccCceE
Confidence 9999999999999999632 222222 3788999999999999999999999999998841
Q ss_pred ----C--C-------CCC-------------------CCCcc-----------c--------------------------
Q 012397 166 ----P--N-------YGR-------------------LSGQR-----------L-------------------------- 176 (464)
Q Consensus 166 ----~--~-------~g~-------------------l~~~~-----------~-------------------------- 176 (464)
+ . .+. +.+.. .
T Consensus 211 yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~ 290 (912)
T PRK05743 211 YVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFK 290 (912)
T ss_pred EEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEEEEec
Confidence 1 0 000 00000 0
Q ss_pred -cccccCC-----------------CcccCC--------cccCcccccc-------------------------------
Q 012397 177 -ENNRAGE-----------------RVAVDS--------RKRNPADFAL------------------------------- 199 (464)
Q Consensus 177 -~~~~~g~-----------------~~~~~~--------~k~~~~d~~~------------------------------- 199 (464)
.++ .|. .|..+. .-+.+.|+.+
T Consensus 291 G~~l-~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~Gl~v~ 369 (912)
T PRK05743 291 GKEL-EGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFVF 369 (912)
T ss_pred hHhh-cCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCcCHH
Confidence 000 000 000000 0000001110
Q ss_pred -----------------------------cccc-----------------------------------------------
Q 012397 200 -----------------------------WKAA----------------------------------------------- 203 (464)
Q Consensus 200 -----------------------------w~~~----------------------------------------------- 203 (464)
|+..
T Consensus 370 ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~~~P~~~~~r~~~~i~ 449 (912)
T PRK05743 370 KANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWIPAWGKNRIESMVE 449 (912)
T ss_pred HhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHcccEEEChHHHHHHHHHHh
Confidence 1100
Q ss_pred --cCCCCcccCCCCCCCCchhhH-H----------------------------------H---H-HH-----Hh-h----
Q 012397 204 --KAGEPSWDSPWGPGRPGWHIE-C----------------------------------S---A-MS-----AH-Y---- 232 (464)
Q Consensus 204 --~~g~~~~~~~wg~~~P~w~~~-~----------------------------------~---~-~~-----~~-~---- 232 (464)
.+..++|+..||.++|.|+.. | . . +. .. +
T Consensus 450 ~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg 529 (912)
T PRK05743 450 NRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSG 529 (912)
T ss_pred cCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhC
Confidence 111235566799999987631 1 0 0 00 00 0
Q ss_pred ------------cCCCeeEEEecccCcc--ccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHH
Q 012397 233 ------------LSSKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQIT 297 (464)
Q Consensus 233 ------------~~~~~~i~~~G~D~~~--~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll 297 (464)
..+|.|++++|+|+++ ||...+++..+ .+..||.++++ |||++. +|+|||||+||+|+|.+++
T Consensus 530 ~s~~~~~~~~~~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~-HG~vld~~G~KMSKSlGNvIdP~~ii 607 (912)
T PRK05743 530 SSHAAVLEQRPELGYPADLYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLT-HGFTVDGKGRKMSKSLGNVIDPQDVI 607 (912)
T ss_pred CCHHHHhcCccccCCCceEEEecccccchHHHHHHHHHHHh-cCCCccceeEE-eeeEECCCCCCCCCCCCCcCCHHHHH
Confidence 1247999999999997 55666666665 45567777755 699998 9999999999999999999
Q ss_pred HhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC------CCccCCChhHHHHHHHHHH
Q 012397 298 ERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRD 371 (464)
Q Consensus 298 ~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~------~~~~~~d~~l~~~l~~~~~ 371 (464)
++||+|++|||+++.++++|++|+.+.+.+..+.+.+|+|+++++.+.+.+.... ......|+|++.+++++++
T Consensus 608 ~~yGaDalR~~ll~~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~ 687 (912)
T PRK05743 608 KKYGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQE 687 (912)
T ss_pred HhcChHHHHHHHHhcCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHH
Confidence 9999999999999888999999999999988888889999988877666543211 1124568999999999999
Q ss_pred HHHHHHhcccChHHHHHHHHHHHH--HHHHHHhhhhcc--cCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHH
Q 012397 372 EFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEV 446 (464)
Q Consensus 372 ~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~~~~~~--~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i 446 (464)
++.++| ++|+++.|+.. +++|+ ...|.|++..++ |...+....|..+..+++.++..++.+|+ |+|+ +||+|
T Consensus 688 ~v~~~~-e~~~f~~a~~~-l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~-~aEel 764 (912)
T PRK05743 688 EILEAY-ENYDFHKVYQK-LHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSF-TAEEI 764 (912)
T ss_pred HHHHHH-HhcCHHHHHHH-HHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHH
Confidence 999999 99999999999 99999 356899999888 44333334466666788899999999999 9999 99999
Q ss_pred HHHhh--hhHhHhcCCCC
Q 012397 447 KTAFL--VLLHVFFDDSP 462 (464)
Q Consensus 447 ~~~l~--~~~~~~~~~~~ 462 (464)
|+.|+ ...+++++.||
T Consensus 765 w~~l~~~~~~sv~~~~wP 782 (912)
T PRK05743 765 WQYLPGEREESVFLEEWP 782 (912)
T ss_pred HHhcccCCCCceEEecCC
Confidence 99994 34578888887
|
|
| >PRK01611 argS arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=406.68 Aligned_cols=362 Identities=18% Similarity=0.153 Sum_probs=284.0
Q ss_pred CCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 012397 36 VRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (464)
Q Consensus 36 ~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 115 (464)
.++++.|++|||||+|++||||+|++++||+++|++|++|++|.+++++||+|+++...+...+..++++++.+.+.|.+
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~ 188 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKE 188 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999888888888899999999999999
Q ss_pred HHHhcCCCCCCCCCCcch--hHHHHHHHHHHHHHCCceE-eecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCccc
Q 012397 116 DMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKR 192 (464)
Q Consensus 116 ~l~~lgi~~~~~~~r~s~--~~~~~~~~~~~L~~~G~~y-~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~ 192 (464)
+|++|||.+ |.+.++++ +...+++++++|.++|++| +.++.+|++.... |
T Consensus 189 ~l~~LgI~~-D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~---~----------------------- 241 (507)
T PRK01611 189 DLDRLGVHF-DVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEF---G----------------------- 241 (507)
T ss_pred HHHHcCCee-eEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhh---C-----------------------
Confidence 999999996 66666663 4568999999999999999 8888888864321 1
Q ss_pred CcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCC-ccEEE
Q 012397 193 NPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN-VSYWM 271 (464)
Q Consensus 193 ~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~-~~~~~ 271 (464)
++.|+.++|+ +|..+|... .++|+..+.. . + ...|++.|.||. .|.....+.+.++|..++ ..++.
T Consensus 242 ~~~~~vl~ks--dG~~~Y~t~----Dia~~~~k~~---~-~--d~~i~V~g~~q~-~hf~~~~~~~~~lg~~~~~~~~~~ 308 (507)
T PRK01611 242 DDKDRVLIKS--DGTYTYFTR----DIAYHLYKFE---R-F--DRVIYVVGADHH-GHFKRLKAALKALGYDPDALEVLL 308 (507)
T ss_pred CCCCeEEEEC--CCCccchHH----HHHHHHHHHh---h-c--CEEEEEECCChH-HHHHHHHHHHHHcCCCcccceEEE
Confidence 0125667765 666554321 1223332211 1 3 456777777832 111122344455554433 25556
Q ss_pred Ee--eeeee-CCcccccccCCccCHHHHHHh-cCc----------------hhHHHHHhhcCCCCccCCCHHHHHHHHH-
Q 012397 272 HN--GHVTN-NNEKMSKSLGNFFTIRQITER-YHP----------------LALRHFLISAHYRSPLNYSVLQLDSASD- 330 (464)
Q Consensus 272 ~~--~~v~~-~G~KmSks~gn~i~~~dll~~-~~~----------------dalR~~ll~~~~~~~~~f~~~~~~~~~~- 330 (464)
|. |++.. +|+|||||+||+|+|+|++++ +|. ||+||++++.++.+++.|+++.+.+..+
T Consensus 309 h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~ 388 (507)
T PRK01611 309 HQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGN 388 (507)
T ss_pred EEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhcCCCCCCccCHHHHHhhcCC
Confidence 64 44554 788999999999999999999 898 9999999999999999999999887754
Q ss_pred HHHHHHHHHHHHHHhcCccccCC-------CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q 012397 331 AVFYIYQTLQDCEVALSPFQEHG-------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (464)
Q Consensus 331 ~l~~l~~~~~~~~~~l~~~~~~~-------~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~ 403 (464)
+..+++|+++|+++++++..... ..++.|++|+.+|.++++.+.+++ ++++++.++.. |++|++.+|+||+
T Consensus 389 ~~~yvqYa~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~-~~~~p~~l~~y-l~~la~~f~~fY~ 466 (507)
T PRK01611 389 NPPYVQYAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAA-EELEPHRIANY-LYELAGAFHSFYN 466 (507)
T ss_pred CcHHHHHHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHH-HHHHHHHHHHHHH
Confidence 23399999999999987753211 114568999999999999999999 88876555555 9999999999999
Q ss_pred hhcccCch-h-hhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 404 MLKKKQPK-Q-QQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 404 ~~~~~~~~-~-~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
.|+ .... . ....|+.++.++..+|++++.||||.|+
T Consensus 467 ~~~-l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi~~~ 504 (507)
T PRK01611 467 RVL-LKDEEEELRNARLALVKATAQVLKNGLDLLGISAP 504 (507)
T ss_pred HCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 886 4322 2 3478999999999999999999999886
|
|
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-47 Score=424.21 Aligned_cols=419 Identities=19% Similarity=0.229 Sum_probs=305.2
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH-cCCC---------------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-LGEN--------------- 101 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~-~g~~--------------- 101 (464)
++-.++.++|++||.|||||+++.++.|+++|+.|++|++|.+..|+|.||.+|+..+++ .|++
T Consensus 41 ~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~ 120 (975)
T PRK06039 41 PEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNE 120 (975)
T ss_pred CCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHH
Confidence 345677778899999999999999999999999999999999999999999999999976 4654
Q ss_pred -hHHHHHHHHHHHHHHHHhcCCCCC-CC--CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCC-------C--C
Q 012397 102 -PLSLSNRYCQEYLVDMADLQCLPP-TY--QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP-------N--Y 168 (464)
Q Consensus 102 -~~~~~~~~~~~~~~~l~~lgi~~~-~~--~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~-------~--~ 168 (464)
+++++++|.+.+.+.+++||++.+ +. ++....+.+.++..|.+|+++|++|++...++||+.|.. . |
T Consensus 121 ~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y 200 (975)
T PRK06039 121 KCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGY 200 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcc
Confidence 789999999999999999998742 11 222237889999999999999999999999999988510 0 0
Q ss_pred ----CC-------C--------------------------CCcc----------c------------------------c
Q 012397 169 ----GR-------L--------------------------SGQR----------L------------------------E 177 (464)
Q Consensus 169 ----g~-------l--------------------------~~~~----------~------------------------~ 177 (464)
+. + .+.. . .
T Consensus 201 ~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~ 280 (975)
T PRK06039 201 KDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKGS 280 (975)
T ss_pred cccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEeeecCc
Confidence 00 0 0000 0 0
Q ss_pred ccccCCC----------------------cccCC--------cccCcccccc----------------------------
Q 012397 178 NNRAGER----------------------VAVDS--------RKRNPADFAL---------------------------- 199 (464)
Q Consensus 178 ~~~~g~~----------------------~~~~~--------~k~~~~d~~~---------------------------- 199 (464)
++ .|.+ |..+. .-+.+.||.+
T Consensus 281 ~L-~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~ 359 (975)
T PRK06039 281 EL-EGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGK 359 (975)
T ss_pred cc-cCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCccccCC
Confidence 00 0000 00000 0000001100
Q ss_pred --------------------------------ccc---------------------------------------------
Q 012397 200 --------------------------------WKA--------------------------------------------- 202 (464)
Q Consensus 200 --------------------------------w~~--------------------------------------------- 202 (464)
|+.
T Consensus 360 ~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~~P~~~~~~~~~~w 439 (975)
T PRK06039 360 FVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWYPEHIKDGRFGKW 439 (975)
T ss_pred CHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEEECcccchhhHHHH
Confidence 000
Q ss_pred ---ccCCCCcccCCCCCCCCchhhH-HH---------H-------------------------------H----------
Q 012397 203 ---AKAGEPSWDSPWGPGRPGWHIE-CS---------A-------------------------------M---------- 228 (464)
Q Consensus 203 ---~~~g~~~~~~~wg~~~P~w~~~-~~---------~-------------------------------~---------- 228 (464)
..+..++|+..||.++|.|+.. |. . +
T Consensus 440 l~~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvW 519 (975)
T PRK06039 440 LENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVW 519 (975)
T ss_pred HhcCccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCcceEeccccccce
Confidence 0112235566799999988642 10 0 0
Q ss_pred --------HH-hh-------c--CCCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeee-CCcccccccC
Q 012397 229 --------SA-HY-------L--SSKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLG 288 (464)
Q Consensus 229 --------~~-~~-------~--~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~-~G~KmSks~g 288 (464)
+. .+ | .+|.|+++.|+|+++++.........++.+ .||.++++ ||+++. +|+|||||+|
T Consensus 520 FdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~-hG~Vld~~G~KMSKSlG 598 (975)
T PRK06039 520 FDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLV-HGHVLDEDGQKMSKSLG 598 (975)
T ss_pred eecCCccHHHhCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEE-eeeEECCCCCCcCCCCC
Confidence 00 00 1 137899999999776544332333333334 57778766 699997 9999999999
Q ss_pred CccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHH-HHHHHHHHHHHHHHHHHHHHh--cCccccC------CCccCC
Q 012397 289 NFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQ-LDSASDAVFYIYQTLQDCEVA--LSPFQEH------GKTARI 358 (464)
Q Consensus 289 n~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~-~~~~~~~l~~l~~~~~~~~~~--l~~~~~~------~~~~~~ 358 (464)
|+|+|.|++++||+|++|||+++. ++++|++|+++. +....+.+.+++|+++++..+ +..+... ...++.
T Consensus 599 NvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~ 678 (975)
T PRK06039 599 NYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNEL 678 (975)
T ss_pred CcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHH
Confidence 999999999999999999999998 569999999999 555677788899988776432 2221101 112456
Q ss_pred ChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH-HHHhhhh--cccCchhhhhhHHHHHHHHHHHHHHHHHhh
Q 012397 359 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI-NSSLNML--KKKQPKQQQLSLIESLRKIENEVKEVLRIL 435 (464)
Q Consensus 359 d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~-n~~~~~~--~~~~~~~~~~~r~~~~~~~~~~l~~~l~lL 435 (464)
|+|++.+++++++.+.++| ++|+++.|+.. |++|+..+ |.|++.. ++|...+ ...+..+..++.++|+.++.+|
T Consensus 679 D~wils~l~~li~~v~~a~-e~y~~~~A~~~-l~~f~~~lsn~Yi~~~k~r~w~~~~-~~~~~~a~~~L~~~L~~l~~lL 755 (975)
T PRK06039 679 DRWILSRLNSLVKEVTEAL-DNYDITKAARA-IRDFVDDLSNWYIRRSRRRFWKEED-DPDKLAAYATLYTVLETLSRLA 755 (975)
T ss_pred HHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHhhhhhccCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999 99999999999 99999876 6677766 4587532 2345667788999999999999
Q ss_pred c-cCCCccHHHHHHHhh---hhHhHhcCCCC
Q 012397 436 G-LLPPGAYSEVKTAFL---VLLHVFFDDSP 462 (464)
Q Consensus 436 g-i~p~~~~e~i~~~l~---~~~~~~~~~~~ 462 (464)
+ |+|+ +||+||+.|+ ...++++++||
T Consensus 756 aPf~Pf-~aEei~~~L~~~~~~~sv~~~~~P 785 (975)
T PRK06039 756 APFTPF-IAEEIYQNLTREDAPESVHLADWP 785 (975)
T ss_pred HhhhHH-HHHHHHHhccccCCCCeeEecCCC
Confidence 9 9998 9999999998 45689999988
|
|
| >PLN02882 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=425.82 Aligned_cols=224 Identities=15% Similarity=0.147 Sum_probs=182.1
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
+|.|+++.|+|++++|.....++..++.+ +||.++ ++|||++. +|+|||||+||+|+|.+++++||+|++|||++++
T Consensus 566 ~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~V-ivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s 644 (1159)
T PLN02882 566 FPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNL-ICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINS 644 (1159)
T ss_pred CCceEEEEecchhhhHHHHHHHHHHHhcCCCCccee-EEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhC
Confidence 47999999999888654333444444445 466666 55799999 8999999999999999999999999999999987
Q ss_pred CC--CCccCCCHHHHHHHH-HHHHHHHHHHHHHHHhcCcc--------ccCC------CccCCChhHHHHHHHHHHHHHH
Q 012397 313 HY--RSPLNYSVLQLDSAS-DAVFYIYQTLQDCEVALSPF--------QEHG------KTARINPAAEDCINKLRDEFHA 375 (464)
Q Consensus 313 ~~--~~~~~f~~~~~~~~~-~~l~~l~~~~~~~~~~l~~~--------~~~~------~~~~~d~~l~~~l~~~~~~v~~ 375 (464)
+. ++|++|+++.+.+.. +.+..++|+++++...+... .+.. ...+.|+|++.+++++.+.+.+
T Consensus 645 ~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~ 724 (1159)
T PLN02882 645 PVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVRE 724 (1159)
T ss_pred CcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 43 688999999998765 46888899877766554321 1100 1135689999999999999999
Q ss_pred HHhcccChHHHHHHHHHHHHH-HHHHHhhhhcccCchh-hhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhh
Q 012397 376 RMSDDLNTSHILTGAFQDALK-FINSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLV 452 (464)
Q Consensus 376 ~~~~~~~~~~al~~yl~~l~~-~~n~~~~~~~~~~~~~-~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~ 452 (464)
+| ++|+++.|+.. |++|+. .+|+|++..++|...+ ..+.+..++.+++++|+.++.+|+ |+|+ +||+||++|+.
T Consensus 725 ~m-e~y~f~~A~~~-I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf-~aEeI~q~L~~ 801 (1159)
T PLN02882 725 EM-GAYRLYTVVPY-LVKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPF-FTEVLYQNLRK 801 (1159)
T ss_pred HH-HccCHHHHHHH-HHHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhH-HHHHHHHHhcc
Confidence 99 99999999999 999997 5799999999975322 234567788999999999999999 9998 99999999975
Q ss_pred -----hHhHhcCCCC
Q 012397 453 -----LLHVFFDDSP 462 (464)
Q Consensus 453 -----~~~~~~~~~~ 462 (464)
..++|+++||
T Consensus 802 ~~~~~~~SVh~~~~P 816 (1159)
T PLN02882 802 VLPGSEESIHYCSFP 816 (1159)
T ss_pred ccCCCCCceeecCCC
Confidence 4689999998
|
|
| >TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=422.24 Aligned_cols=213 Identities=17% Similarity=0.110 Sum_probs=180.3
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~- 312 (464)
+|.|+|++|+|++++|+.+|.+...|... .++++.+++|||++++|+|||||+||+|+|.|+++.||+|++|||+++.
T Consensus 572 yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~ 651 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAA 651 (938)
T ss_pred CCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcC
Confidence 48999999999999999999887777654 3555666889999999999999999999999999999999999999987
Q ss_pred CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHH-HHHH
Q 012397 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHIL-TGAF 391 (464)
Q Consensus 313 ~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al-~~yl 391 (464)
++++|++|+++.+.+..+.+.++++++.++...... ..+...+..|+|++.+++++++++.++| ++++++.|+ .. +
T Consensus 652 ~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~~-~~~~~~~~~D~wlls~l~~~i~~v~~a~-e~~~~~~Al~~~-l 728 (938)
T TIGR00395 652 ETVQDADWKESEVEGTILRLERLYEFAEEITKESNL-ETGEETSFIDRWLESRMNAAIKETYEAM-ENFQTRKAVKYA-L 728 (938)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCccCChHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHH-H
Confidence 899999999999999999999999998876543221 0011124568999999999999999999 899999999 66 9
Q ss_pred HHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 392 QDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 392 ~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
+++++.+|.|+...+. ++ ...+.++|+.++.+|+ |+|+ +||+||+.|+..-+++++.||
T Consensus 729 ~~~~~~~n~Yl~~~~~---------~~--~~~l~~~l~~~~~LLaP~~P~-~aEeiw~~Lg~~~sv~~~~wP 788 (938)
T TIGR00395 729 FDLQADVDWYRRRGGV---------NH--KDVLARYLETWIKLLAPFAPH-FAEEMWEEVGNEGFVSLAKFP 788 (938)
T ss_pred HHHHHHHHHHHHhCcc---------hH--HHHHHHHHHHHHHHhcCcccH-HHHHHHHHcCCCCeEEecCCC
Confidence 9999999988764321 11 1357899999999999 9999 999999999866678888888
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. |
| >PLN02381 valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=418.93 Aligned_cols=421 Identities=15% Similarity=0.142 Sum_probs=309.3
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH-----cCCC-----------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-----LGEN----------- 101 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~-----~g~~----------- 101 (464)
++..|..++|+++|.|||||++++++.|+++|+.|++|++|.|+.|+|+||.+++..+++ .|.+
T Consensus 128 ~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~ 207 (1066)
T PLN02381 128 PPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVS 207 (1066)
T ss_pred CcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHH
Confidence 345677778888999999999999999999999999999999999999999999877754 2543
Q ss_pred -hHHHHHHHHHHHHHHHHhcCCCCCC---CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC------------
Q 012397 102 -PLSLSNRYCQEYLVDMADLQCLPPT---YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------ 165 (464)
Q Consensus 102 -~~~~~~~~~~~~~~~l~~lgi~~~~---~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~------------ 165 (464)
+++++++|.+.+.+.+++||++.+- .++...++.+.++.+|.+|+++|+||++...++||+.|-
T Consensus 208 ~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d 287 (1066)
T PLN02381 208 EVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYID 287 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhhc
Confidence 4689999999999999999998531 233333788999999999999999999999999987741
Q ss_pred ---------CCC------CC-------CCC--c-------ccc------------------cc----------------c
Q 012397 166 ---------PNY------GR-------LSG--Q-------RLE------------------NN----------------R 180 (464)
Q Consensus 166 ---------~~~------g~-------l~~--~-------~~~------------------~~----------------~ 180 (464)
+.+ |. +.+ . .++ ++ .
T Consensus 288 ~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~~~~Pl~~~~ipIi 367 (1066)
T PLN02381 288 IKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLHGKFAVHPFNGRKLPII 367 (1066)
T ss_pred cccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhCCCEEECCCCCCEEEEE
Confidence 000 10 000 0 000 00 0
Q ss_pred c-CCCcccCC--------cccCcccccc----------------------------------------------------
Q 012397 181 A-GERVAVDS--------RKRNPADFAL---------------------------------------------------- 199 (464)
Q Consensus 181 ~-g~~~~~~~--------~k~~~~d~~~---------------------------------------------------- 199 (464)
. ...|+.+. .-+.+.||.+
T Consensus 368 ~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~ 447 (1066)
T PLN02381 368 CDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAK 447 (1066)
T ss_pred ECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecce
Confidence 0 00000000 0000001100
Q ss_pred ---------ccc----------------------------------------------------ccCCCCcccCCCCCCC
Q 012397 200 ---------WKA----------------------------------------------------AKAGEPSWDSPWGPGR 218 (464)
Q Consensus 200 ---------w~~----------------------------------------------------~~~g~~~~~~~wg~~~ 218 (464)
|+. ..+..++|+..||.++
T Consensus 448 ~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pI 527 (1066)
T PLN02381 448 NNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRI 527 (1066)
T ss_pred eeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCcc
Confidence 000 0112235566899999
Q ss_pred CchhhHH-----------------H------------H-------HHHh----------------hcC-----------C
Q 012397 219 PGWHIEC-----------------S------------A-------MSAH----------------YLS-----------S 235 (464)
Q Consensus 219 P~w~~~~-----------------~------------~-------~~~~----------------~~~-----------~ 235 (464)
|.|+... . . +... .+| .
T Consensus 528 Piw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~ 607 (1066)
T PLN02381 528 PAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFY 607 (1066)
T ss_pred ceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccC
Confidence 9997520 0 0 1000 012 3
Q ss_pred CeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeee-CCcccccccCCccCHHHHHH---------------
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE--------------- 298 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~--------------- 298 (464)
|.|+.+.|.|++|++....+.+..++.+ .||.++++ ||+|+. +|+|||||+||+|+|.|+++
T Consensus 608 P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~-hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~ 686 (1066)
T PLN02381 608 PTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYL-HPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN 686 (1066)
T ss_pred CCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHhee-cceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccc
Confidence 7899999999887766544444444444 57788866 699998 99999999999999999999
Q ss_pred ----------------------hcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-cccC--
Q 012397 299 ----------------------RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSP-FQEH-- 352 (464)
Q Consensus 299 ----------------------~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~-~~~~-- 352 (464)
.||+||+|||+++. +.+++++|+.+.+...++.+.+|||+++++...+.. +...
T Consensus 687 ~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~ 766 (1066)
T PLN02381 687 LDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPAT 766 (1066)
T ss_pred cchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccc
Confidence 78999999999987 778999999999999999999999999887665532 1110
Q ss_pred ---CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--HHHHHHhhhhcccCchhh---hhhHHHHHHHH
Q 012397 353 ---GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQ---QLSLIESLRKI 424 (464)
Q Consensus 353 ---~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~~~~~~~~~~~~---~~~r~~~~~~~ 424 (464)
......|+|++.+|++++..+.++| ++|+++.|+.. +++|+ ..+|.|++..++|...+. ...|.....++
T Consensus 767 ~~~~~~~~~DrWILskL~~~i~~v~~~~-e~y~F~~A~~~-l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L 844 (1066)
T PLN02381 767 LSVETMPFSCKWILSVLNKAISKTVSSL-DAYEFSDAAST-VYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTL 844 (1066)
T ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHH
Confidence 1123578999999999999999999 99999999999 99995 568999999999643211 23455667789
Q ss_pred HHHHHHHHHhhc-cCCCccHHHHHHHhhh------hHhHhcCCCC
Q 012397 425 ENEVKEVLRILG-LLPPGAYSEVKTAFLV------LLHVFFDDSP 462 (464)
Q Consensus 425 ~~~l~~~l~lLg-i~p~~~~e~i~~~l~~------~~~~~~~~~~ 462 (464)
..+|..++.+|+ |+|+ +||+||+.|+. ..++++..+|
T Consensus 845 ~~vL~~llrLL~PfmPf-itEELw~~L~~~~~~~~~~SI~~~~~P 888 (1066)
T PLN02381 845 WICLDTGLRLLHPFMPF-VTEELWQRLPQPKDHTRKDSIMISEYP 888 (1066)
T ss_pred HHHHHHHHHHHHhHhHH-HHHHHHHHhhhhccCCCCCeeEeCCCC
Confidence 999999999999 9999 99999999963 2367888877
|
|
| >cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=384.42 Aligned_cols=270 Identities=21% Similarity=0.222 Sum_probs=220.5
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCC-------------ChHHHH
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGE-------------NPLSLS 106 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~-------------~~~~~~ 106 (464)
..|..++|||||.+||||+++++++|+++|++|++|++|.+++|+|+||++|+.+|++.+. ++++++
T Consensus 2 ~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
T cd00668 2 FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFV 81 (312)
T ss_pred EEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHH
Confidence 3567778999999999999999999999999999999999999999999999999999887 899999
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCC
Q 012397 107 NRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGE 183 (464)
Q Consensus 107 ~~~~~~~~~~l~~lgi~~~-~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~ 183 (464)
++|.+.|.+++++|||+.+ +.+.++. +|.+.++++|.+|+++|++|++...++...+-+..++.+++..++.+..+.
T Consensus 82 ~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~ 161 (312)
T cd00668 82 EEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGK 161 (312)
T ss_pred HHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCC
Confidence 9999999999999999853 1333333 788999999999999999999988887776666667766654444443332
Q ss_pred CcccCCcc-------cCcccccccccccCCCCcccCCCCCCCCchhhHH----HH---HHHhhcC--------CCeeEEE
Q 012397 184 RVAVDSRK-------RNPADFALWKAAKAGEPSWDSPWGPGRPGWHIEC----SA---MSAHYLS--------SKFDIHG 241 (464)
Q Consensus 184 ~~~~~~~k-------~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~----~~---~~~~~~~--------~~~~i~~ 241 (464)
+..+..+ .++.|+++ +|+.+||.++|+|+++| +. +...+.+ ++.|+|+
T Consensus 162 -~~p~~~~~~~~~~l~~~~d~~i---------sR~~~WG~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~ 231 (312)
T cd00668 162 -IVPEHVKNRMEAWLESLLDWAI---------SRQRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHL 231 (312)
T ss_pred -cCChHHHHHHHHHHhCCCCeEE---------eccCCCCCcCCcccccchhhccHHHHHHcCCCccchhhhhcCCceEEE
Confidence 1111111 12234444 45679999999988877 21 1112222 2789999
Q ss_pred ecccCccccchHHHHHHhhccCC-CCccEEEEeeeeeeCC-cccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCcc
Q 012397 242 GGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNN-EKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPL 318 (464)
Q Consensus 242 ~G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~~G-~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~ 318 (464)
+|+|++++|+.++++++.++++. ++.++++| ||++++| +|||||+||+|++.|+++++|+|++|||+++. ++++|.
T Consensus 232 ~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~ 310 (312)
T cd00668 232 IGKDILRGWANFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDI 310 (312)
T ss_pred EecchhhhHHHHHHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCC
Confidence 99999999999999999998876 78888775 9999976 99999999999999999999999999999987 788888
Q ss_pred CC
Q 012397 319 NY 320 (464)
Q Consensus 319 ~f 320 (464)
+|
T Consensus 311 ~~ 312 (312)
T cd00668 311 RL 312 (312)
T ss_pred CC
Confidence 76
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. |
| >PTZ00419 valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=420.00 Aligned_cols=417 Identities=14% Similarity=0.129 Sum_probs=304.3
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHH-----HHcCCC-----------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRA-----NDLGEN----------- 101 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a-----~~~g~~----------- 101 (464)
++..|..++|+++|.|||||+++++++|+++|+.|++|++|.|+.|+|+||.+++... .+.|.+
T Consensus 60 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~ 139 (995)
T PTZ00419 60 KKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLK 139 (995)
T ss_pred CeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHH
Confidence 4567777888999999999999999999999999999999999999999998774432 234544
Q ss_pred -hHHHHHHHHHHHHHHHHhcCCCCC-CC--CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCC-----------
Q 012397 102 -PLSLSNRYCQEYLVDMADLQCLPP-TY--QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP----------- 166 (464)
Q Consensus 102 -~~~~~~~~~~~~~~~l~~lgi~~~-~~--~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~----------- 166 (464)
+++++++|.+.+.+.+++||++.+ +. ++...++.+.++++|.+|+++|++|++...++||+.|-.
T Consensus 140 ~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~ 219 (995)
T PTZ00419 140 KVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEE 219 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhccccc
Confidence 468899999999999999999853 12 222237889999999999999999999999999987410
Q ss_pred ----------CC------CC-------CCC-cc--c-------c------------------cc----------------
Q 012397 167 ----------NY------GR-------LSG-QR--L-------E------------------NN---------------- 179 (464)
Q Consensus 167 ----------~~------g~-------l~~-~~--~-------~------------------~~---------------- 179 (464)
.+ |. +.+ .. + + ++
T Consensus 220 ~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~ip 299 (995)
T PTZ00419 220 IEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIP 299 (995)
T ss_pred ccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEEE
Confidence 00 11 000 00 0 0 00
Q ss_pred -ccCC-CcccCC--------cccCcccccc--------------------------------------------------
Q 012397 180 -RAGE-RVAVDS--------RKRNPADFAL-------------------------------------------------- 199 (464)
Q Consensus 180 -~~g~-~~~~~~--------~k~~~~d~~~-------------------------------------------------- 199 (464)
..++ .|..+. .-+.+.||.+
T Consensus 300 ii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~ 379 (995)
T PTZ00419 300 IIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDK 379 (995)
T ss_pred EEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEee
Confidence 0000 000000 0000111111
Q ss_pred ----------ccc-------------------------------------------------ccCCCCcccCCCCCCCCc
Q 012397 200 ----------WKA-------------------------------------------------AKAGEPSWDSPWGPGRPG 220 (464)
Q Consensus 200 ----------w~~-------------------------------------------------~~~g~~~~~~~wg~~~P~ 220 (464)
|+. .++..++|+..||.++|.
T Consensus 380 ~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~ 459 (995)
T PTZ00419 380 VPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPA 459 (995)
T ss_pred EEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeE
Confidence 000 011223556689999998
Q ss_pred hhhH-HH----------------------------------H-H--------------HH--hhcC-----------CCe
Q 012397 221 WHIE-CS----------------------------------A-M--------------SA--HYLS-----------SKF 237 (464)
Q Consensus 221 w~~~-~~----------------------------------~-~--------------~~--~~~~-----------~~~ 237 (464)
|+.. |. . + .+ ..+| +|.
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P~ 539 (995)
T PTZ00419 460 YRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPT 539 (995)
T ss_pred EEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCCC
Confidence 8431 00 0 0 00 0011 378
Q ss_pred eEEEecccCccccchHHHHHHhhc----cCC-CCccEEEEeeeeee-CCcccccccCCccCHHHHHH-------------
Q 012397 238 DIHGGGIDLIFPHHENEIAQSCAA----CQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE------------- 298 (464)
Q Consensus 238 ~i~~~G~D~~~~h~~~~~a~~~a~----~~~-~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~------------- 298 (464)
|+++.|+|++++ |++++++. .+. ||..+++ ||+|+. +|+|||||+||+|+|.++++
T Consensus 540 d~~~~G~Dii~~----W~arm~~~~~~~~~~~Pfk~v~~-HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~ 614 (995)
T PTZ00419 540 SLLETGSDILFF----WVARMVMMSLHLTDKLPFKTVFL-HAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYE 614 (995)
T ss_pred cEEEechhHHhH----HHHHHHHHHHHhcCCCChHHHhc-cceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhc
Confidence 999999998775 55555433 344 5567755 699998 99999999999999999999
Q ss_pred ------------------------hcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-
Q 012397 299 ------------------------RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH- 352 (464)
Q Consensus 299 ------------------------~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~- 352 (464)
+||+|++|||+++. +.++|++|+.+.+...++.+.++||+++++.+.+.+....
T Consensus 615 ~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~ 694 (995)
T PTZ00419 615 GNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLP 694 (995)
T ss_pred cccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 89999999999986 7899999999999988888999999999887766543211
Q ss_pred ----------CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--HHHHHHhhhhcccCc-hhhhhhHHH
Q 012397 353 ----------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQP-KQQQLSLIE 419 (464)
Q Consensus 353 ----------~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~~~~~~~~~-~~~~~~r~~ 419 (464)
......|+|++.+++++++.+.++| ++|+++.|+.. +++|+ ..+|.|++..++|.. ....+.+..
T Consensus 695 ~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~-e~y~f~~A~~~-i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~ 772 (995)
T PTZ00419 695 NSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGF-KEYDFSEATQA-TYNFWLYELCDVYLELIKPRLSKQSDGERKQH 772 (995)
T ss_pred ccccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHH
Confidence 0112458999999999999999999 99999999999 99974 568999999999752 122233556
Q ss_pred HHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh----HhHhcCCCC
Q 012397 420 SLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL----LHVFFDDSP 462 (464)
Q Consensus 420 ~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~----~~~~~~~~~ 462 (464)
...++.++|+.++.+|+ |+|+ +||+||+.|+.. .++++..||
T Consensus 773 ~~~~L~~vL~~~l~LL~PfmPf-itEElw~~L~~~~~~~~si~~~~~P 819 (995)
T PTZ00419 773 AQDVLHTVLDIGLRLLHPMMPF-ITEELYQRLPNYLRKSESISIAKYP 819 (995)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh-hHHHHHHhhhccCCCCCeeeccCCC
Confidence 77889999999999999 9999 999999999642 367777777
|
|
| >cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=377.66 Aligned_cols=276 Identities=21% Similarity=0.220 Sum_probs=212.9
Q ss_pred eEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 012397 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (464)
Q Consensus 41 ~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (464)
.|..++|+|||++||||+|+.+++|+++|++|++|++|.+++|+||||++|+.+|+++|++|+++++.+.+.|.+++++|
T Consensus 3 ~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 82 (319)
T cd00814 3 LITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWL 82 (319)
T ss_pred EEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 45566677779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCC--Cc----------ccccccc-CCCc
Q 012397 121 QCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLS--GQ----------RLENNRA-GERV 185 (464)
Q Consensus 121 gi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~--~~----------~~~~~~~-g~~~ 185 (464)
||++ |.+.+++ .|.+.+++++++|.++|++|+++.+++||+.|......+. +. .+.+... +...
T Consensus 83 gI~~-D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~ 161 (319)
T cd00814 83 NISF-DYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPDF 161 (319)
T ss_pred CCcC-CCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCcc
Confidence 9985 7787776 4888999999999999999999999999876422111100 00 0000000 0000
Q ss_pred ccCCcccCccccccccc--ccCCCCcccC-CCCCCCCc--------hhhHHHHHHH-------h-----h--cCCCeeEE
Q 012397 186 AVDSRKRNPADFALWKA--AKAGEPSWDS-PWGPGRPG--------WHIECSAMSA-------H-----Y--LSSKFDIH 240 (464)
Q Consensus 186 ~~~~~k~~~~d~~~w~~--~~~g~~~~~~-~wg~~~P~--------w~~~~~~~~~-------~-----~--~~~~~~i~ 240 (464)
.+..... ....-|.. ..+-.++|+. .||+++|. |+++...+.. + + -+++.++|
T Consensus 162 ~~p~~~~--~~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (319)
T cd00814 162 IWPENAR--NEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVH 239 (319)
T ss_pred CCCHHHH--HHHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEE
Confidence 0000000 00001211 1233468888 99999984 8765432210 0 1 13478999
Q ss_pred EecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccC
Q 012397 241 GGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLN 319 (464)
Q Consensus 241 ~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~ 319 (464)
++|+|+++||+++|++++++++.++|..+ ++|||++++|+|||||+||+|+|.|+++.+|+|++|||+++. +..+|.+
T Consensus 240 ~~G~D~~~fh~~~~pa~l~~~~~~~~~~~-~~~~~~~~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~ 318 (319)
T cd00814 240 FIGKDIIRFHAIYWPAMLLGAGLPLPTRI-VAHGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSD 318 (319)
T ss_pred EEeechhhhhHHHHHHHHHhCCCCCCcEe-eeeeeEEECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCC
Confidence 99999999999999999988876556665 668999999999999999999999999999999999999997 8889988
Q ss_pred C
Q 012397 320 Y 320 (464)
Q Consensus 320 f 320 (464)
|
T Consensus 319 f 319 (319)
T cd00814 319 F 319 (319)
T ss_pred C
Confidence 7
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. |
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=403.62 Aligned_cols=399 Identities=16% Similarity=0.136 Sum_probs=295.8
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
+..+...+|+|||.|||||+++++++|+++|++|++|++|.|+.|+|+||.+|+.+|.+.|++|.++++++.+.+.++++
T Consensus 33 ~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~ 112 (805)
T PRK00390 33 KYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLK 112 (805)
T ss_pred CEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 33333345777799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCC-CCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------CCCCCCC-----------
Q 012397 119 DLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYGRL----------- 171 (464)
Q Consensus 119 ~lgi~~~-~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~~~~g~l----------- 171 (464)
+||++.+ +.+.+|. +|.+.++++|.+|+++|++|++...++||+.| |+.||..
T Consensus 113 ~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~ 192 (805)
T PRK00390 113 SLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFL 192 (805)
T ss_pred HhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeE
Confidence 9999852 1334433 78999999999999999999999999999884 4455421
Q ss_pred --C--------------------------------Ccccc-ccc------------------------------------
Q 012397 172 --S--------------------------------GQRLE-NNR------------------------------------ 180 (464)
Q Consensus 172 --~--------------------------------~~~~~-~~~------------------------------------ 180 (464)
+ +..+. .+.
T Consensus 193 ~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~ 272 (805)
T PRK00390 193 KITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAE 272 (805)
T ss_pred ecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhc
Confidence 0 00000 000
Q ss_pred -------------------------------cCCC-----------------cccCC--------cccCcccccccccc-
Q 012397 181 -------------------------------AGER-----------------VAVDS--------RKRNPADFALWKAA- 203 (464)
Q Consensus 181 -------------------------------~g~~-----------------~~~~~--------~k~~~~d~~~w~~~- 203 (464)
.|.. |..+. .-+.+.|+..++..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~ 352 (805)
T PRK00390 273 QNPAVAAFIEECKKKSDLERQTETKEKTGVFTGLYAIHPLTGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYG 352 (805)
T ss_pred chHHHHHHHHHHhhhcchhhhhcccceeeeecCcEEECCCCCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcC
Confidence 0000 00000 00001122211100
Q ss_pred ---------------------------------------------------------------cCCCCcccCCCCCCCCc
Q 012397 204 ---------------------------------------------------------------KAGEPSWDSPWGPGRPG 220 (464)
Q Consensus 204 ---------------------------------------------------------------~~g~~~~~~~wg~~~P~ 220 (464)
++..++|+..||.++|.
T Consensus 353 L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIPi 432 (805)
T PRK00390 353 LPIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIPI 432 (805)
T ss_pred CCceeeeCCCCcccccccccccCCeEEEeccccCCCCHHHHHHHHHHHHHHcCCCCCceEEECCCccccccccCCCceeE
Confidence 01113556689999998
Q ss_pred hhh-HHHH------------------------------------------H-------------HHh---h-cC------
Q 012397 221 WHI-ECSA------------------------------------------M-------------SAH---Y-LS------ 234 (464)
Q Consensus 221 w~~-~~~~------------------------------------------~-------------~~~---~-~~------ 234 (464)
|+. +|.. + ++. + +.
T Consensus 433 ~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~ 512 (805)
T PRK00390 433 IHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAP 512 (805)
T ss_pred EEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccCc
Confidence 763 1100 0 000 0 00
Q ss_pred ---------CCeeEEEecccCccccchH---HHHHHhhc---cC-CCCccEEEEeeeeeeCCcccccccCCccCHHHHHH
Q 012397 235 ---------SKFDIHGGGIDLIFPHHEN---EIAQSCAA---CQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 298 (464)
Q Consensus 235 ---------~~~~i~~~G~D~~~~h~~~---~~a~~~a~---~~-~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~ 298 (464)
.|+|++++|.||+..|..+ |...+... .+ .|+.++ +||||| |||||+||+|+|.|+++
T Consensus 513 ~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v-~~~G~v-----KMSKS~GN~i~p~~~i~ 586 (805)
T PRK00390 513 FDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKL-LTQGMV-----KMSKSKGNVVDPDDIIE 586 (805)
T ss_pred CChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhh-eecCcE-----EeCCCCCCCCCHHHHHH
Confidence 3799999999976555432 22222222 23 466666 778999 99999999999999999
Q ss_pred hcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHH
Q 012397 299 RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377 (464)
Q Consensus 299 ~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~ 377 (464)
+||+|++|||+++. +++++++|+.+.+.++.+.+.++++++++..+...... ......|+|++.++++++++++++|
T Consensus 587 ~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~~--~~~~~~D~~il~~l~~~i~~v~~~~ 664 (805)
T PRK00390 587 KYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGALD--VAALSEDKELRRKLHKTIKKVTEDI 664 (805)
T ss_pred HcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcccccC--cccChhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999985 89999999999999999999999999877433222111 1123578999999999999999999
Q ss_pred hcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhH
Q 012397 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHV 456 (464)
Q Consensus 378 ~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~ 456 (464)
++|+++.|++. |++|++.+++|++ .....++.++++.++.+|+ |+|+ +||+||+.|+...++
T Consensus 665 -e~~~f~~ai~~-l~~f~n~lsk~~~--------------~~~~~~l~~~l~~l~~lLaPf~P~-iaEElw~~L~~~~sv 727 (805)
T PRK00390 665 -ERLRFNTAIAA-LMELVNALYKAED--------------EQDKAVLREALEILVRLLAPFAPH-LAEELWEKLGHEGSI 727 (805)
T ss_pred -HcCCHHHHHHH-HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHcCCCCee
Confidence 89999999999 9999999999982 1123477889999999999 9999 999999999765578
Q ss_pred hcCCCC
Q 012397 457 FFDDSP 462 (464)
Q Consensus 457 ~~~~~~ 462 (464)
++..||
T Consensus 728 ~~~~wP 733 (805)
T PRK00390 728 ANAPWP 733 (805)
T ss_pred EecCCC
Confidence 888887
|
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-46 Score=406.45 Aligned_cols=401 Identities=16% Similarity=0.120 Sum_probs=296.6
Q ss_pred eEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 012397 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (464)
Q Consensus 41 ~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (464)
.+...+|+|||.|||||+++++++|+++|++|++|++|.|+.|+|+||.+++.+|.+.|+++.++++++.+.+.+.+++|
T Consensus 32 ~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 111 (842)
T TIGR00396 32 YILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL 111 (842)
T ss_pred EEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 33444678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CCCCCCCC-----------
Q 012397 121 QCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLS----------- 172 (464)
Q Consensus 121 gi~~~-~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~~~g~l~----------- 172 (464)
|++.+ +.+.+|. +|.+.++.+|.+|+++|++|++...++||+.| |..||.-.
T Consensus 112 G~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~ 191 (842)
T TIGR00396 112 GFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLK 191 (842)
T ss_pred CCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEe
Confidence 99852 2344444 78899999999999999999999999999875 44444310
Q ss_pred ----------------------------------Ccc----cc----ccc------------------------------
Q 012397 173 ----------------------------------GQR----LE----NNR------------------------------ 180 (464)
Q Consensus 173 ----------------------------------~~~----~~----~~~------------------------------ 180 (464)
+.. +. .+.
T Consensus 192 i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~ 271 (842)
T TIGR00396 192 ITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAEN 271 (842)
T ss_pred hhhhHHHHHHHHhhhccccHHHHHHHHhcccccceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcc
Confidence 000 00 000
Q ss_pred ------------------------------cCCC-----------------cccCC--------cccCcccccccccc--
Q 012397 181 ------------------------------AGER-----------------VAVDS--------RKRNPADFALWKAA-- 203 (464)
Q Consensus 181 ------------------------------~g~~-----------------~~~~~--------~k~~~~d~~~w~~~-- 203 (464)
.|.. |..+. .-+.+.||..++..
T Consensus 272 ~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L 351 (842)
T TIGR00396 272 NPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLTGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKL 351 (842)
T ss_pred hHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCCCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCC
Confidence 0000 00000 00011222211100
Q ss_pred ------------------------------------------------------------cCCCCcccCCCCCCCCchhh
Q 012397 204 ------------------------------------------------------------KAGEPSWDSPWGPGRPGWHI 223 (464)
Q Consensus 204 ------------------------------------------------------------~~g~~~~~~~wg~~~P~w~~ 223 (464)
++..++|+..||.++|.|+.
T Consensus 352 ~i~~vi~~~~~~~~~~~~~~~G~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~PIPi~~~ 431 (842)
T TIGR00396 352 PIKVVIDPAGKNLKTQAFTEDGVLVNSGEFNGLNSSEAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEPIPIIHC 431 (842)
T ss_pred CcceeeCCcccccccccccCCceEecchhcCCCCHHHHHHHHHHHHHHcCCCCceEEeecccceeecccccCCceEEEEE
Confidence 01113456679999998863
Q ss_pred H-HHH-------------------------------------------H-------------HH----------------
Q 012397 224 E-CSA-------------------------------------------M-------------SA---------------- 230 (464)
Q Consensus 224 ~-~~~-------------------------------------------~-------------~~---------------- 230 (464)
. |.. + ++
T Consensus 432 ~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~ 511 (842)
T TIGR00396 432 EDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFD 511 (842)
T ss_pred CCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcC
Confidence 1 100 0 00
Q ss_pred -hhc--CCCeeEEEecccCccccchH---HHHHHhhc----cCCCCccEEEEeeeeee-----CCc--------------
Q 012397 231 -HYL--SSKFDIHGGGIDLIFPHHEN---EIAQSCAA----CQDSNVSYWMHNGHVTN-----NNE-------------- 281 (464)
Q Consensus 231 -~~~--~~~~~i~~~G~D~~~~h~~~---~~a~~~a~----~~~~~~~~~~~~~~v~~-----~G~-------------- 281 (464)
+.+ ..|+|++++|.||...|..+ |...+... +..|+.++ +.||||+. +|+
T Consensus 512 ~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l-~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~ 590 (842)
T TIGR00396 512 KEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKL-INQGMVLGFYYPPNGKSPPDELTERDEKAK 590 (842)
T ss_pred hHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHH-hccceEEeeeecCCCCccChhhhccccccc
Confidence 000 13799999999986555433 33233222 23467777 45799997 788
Q ss_pred -------------ccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012397 282 -------------KMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALS 347 (464)
Q Consensus 282 -------------KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~ 347 (464)
|||||+||+|+|.|++++||+|++|||+++. +++++++|+.+.+.++.+.+.+|++++.++.+.+.
T Consensus 591 ~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~ 670 (842)
T TIGR00396 591 DKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELD 670 (842)
T ss_pred cccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999975 88999999999999999999999999987655543
Q ss_pred ccc--cCCCccCCChhHHHHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHH
Q 012397 348 PFQ--EHGKTARINPAAEDCINKLRDEFHARMSDDLN-TSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKI 424 (464)
Q Consensus 348 ~~~--~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~-~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~ 424 (464)
... ........|+|++.++++++++++++| +++. ++.|++. +++|++.++++.. + .++
T Consensus 671 ~~~~~~~~~l~~~d~~il~~l~~~i~~v~~~~-e~y~~fn~ai~~-l~~f~n~L~~~~~----------~-------~~l 731 (842)
T TIGR00396 671 GKTYLTPTILEEAQKELRRDVHKFLKKVTEDL-EKLESFNTAISA-MMILLNALYKAKK----------D-------ALY 731 (842)
T ss_pred ccccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHH-HHHHHHHHHhhhh----------H-------HHH
Confidence 211 111124578999999999999999999 8878 9999999 9999987766421 0 257
Q ss_pred HHHHHHHHHhhc-cCCCccHHHHHHHhhhh-HhHhcCCCC
Q 012397 425 ENEVKEVLRILG-LLPPGAYSEVKTAFLVL-LHVFFDDSP 462 (464)
Q Consensus 425 ~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~-~~~~~~~~~ 462 (464)
.++|..++.+|+ |+|+ +||+||+.|+.- .+++.+.||
T Consensus 732 ~~~l~~ll~lLaPf~Ph-iaEElW~~l~~~~~sv~~~~wP 770 (842)
T TIGR00396 732 LEYLKGFLTVLSPFAPH-LAEELWEKLGSEPFIIKQAKWP 770 (842)
T ss_pred HHHHHHHHHHHhhhhhH-HHHHHHHHhCCCCCeeecCCCC
Confidence 789999999999 9999 999999999743 368888888
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >TIGR00392 ileS isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=407.95 Aligned_cols=222 Identities=18% Similarity=0.158 Sum_probs=178.6
Q ss_pred CCeeEEEecccCcc--ccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhh
Q 012397 235 SKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311 (464)
Q Consensus 235 ~~~~i~~~G~D~~~--~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~ 311 (464)
+|+|++++|+||++ ||...+++... .+..||.++++ |||++. +|+|||||+||+|+|.|++++||+|++|||+++
T Consensus 563 ~P~d~~i~G~Di~r~Wf~~~~~~~~~~-~~~~P~k~v~~-hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~ 640 (861)
T TIGR00392 563 FPADFILEGSDQTRGWFYSSLAIGTAL-FGQAPYKNVIT-HGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVAS 640 (861)
T ss_pred CCceEEEEecchhccHHHHHHHHHHHH-cCCCChHhhEe-cceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHh
Confidence 37899999999999 44444554332 24467778766 699997 999999999999999999999999999999999
Q ss_pred cCCCCccCCCHHHHHHHHHHHH-HHHHHHHHHH--HhcCccccC------CCccCCChhHHHHHHHHHHHHHHHHhcccC
Q 012397 312 AHYRSPLNYSVLQLDSASDAVF-YIYQTLQDCE--VALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLN 382 (464)
Q Consensus 312 ~~~~~~~~f~~~~~~~~~~~l~-~l~~~~~~~~--~~l~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~ 382 (464)
.++++|++|+++.+.+..+.+. .++|.++++. +.+.++... ....+.|++++.+++++.+.+.++| ++++
T Consensus 641 ~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~-e~~~ 719 (861)
T TIGR00392 641 SDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEAL-EKYN 719 (861)
T ss_pred CCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 8899999999999988776444 4565776665 555543311 1124568999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHH--HHHHhhhhcc--cCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh---H
Q 012397 383 TSHILTGAFQDALKF--INSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL---L 454 (464)
Q Consensus 383 ~~~al~~yl~~l~~~--~n~~~~~~~~--~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~---~ 454 (464)
++.|+.. +++|+.. .|.|++..++ |...+....| ....+++.+++.++.+|. |+|+ +||+||+.|+.. .
T Consensus 720 ~~~a~~~-l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~-~~~~~l~~~l~~l~~lL~P~~P~-~aeeiw~~L~~~~~~~ 796 (861)
T TIGR00392 720 FHKVLRA-LQDFIVEELSNWYIRIIRDRLYCEAKDNDKR-AAQTTLYYALLTLVRLLAPFLPH-TAEEIYQNLPGGEEEE 796 (861)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhhHHhccCCCCHHHH-HHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHhccccCCCC
Confidence 9999999 9999875 7999998866 8754433334 566788899999999999 9999 999999999753 5
Q ss_pred hHhcCCCC
Q 012397 455 HVFFDDSP 462 (464)
Q Consensus 455 ~~~~~~~~ 462 (464)
+++++.||
T Consensus 797 si~~~~wP 804 (861)
T TIGR00392 797 SVHLNLWP 804 (861)
T ss_pred ceeccCCC
Confidence 68888887
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms. |
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=409.57 Aligned_cols=222 Identities=17% Similarity=0.132 Sum_probs=182.5
Q ss_pred CCeeEEEecccCcc--ccchHHHHHHhhccC-CCCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHh
Q 012397 235 SKFDIHGGGIDLIF--PHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310 (464)
Q Consensus 235 ~~~~i~~~G~D~~~--~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll 310 (464)
+|.|+++.|+|+++ ||.. ..+..++.+ .||.++++ |||++. +|+|||||+||+|+|.+++++||+|++|||++
T Consensus 582 ~PaD~~~eG~Di~rgWF~s~--ll~s~~~~~~~P~k~V~~-HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~ll 658 (961)
T PRK13804 582 WPADLYLEGSDQHRGWFNSS--LLESCGTRGRAPYKAVLT-HGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVA 658 (961)
T ss_pred CCceEEEEEcccccHHHHHH--HHHHHHhcCCCChhhEEE-eccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHH
Confidence 57899999999886 4442 233333334 46678876 599998 99999999999999999999999999999999
Q ss_pred hcCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC------CccCCChhHHHHHHHHHHHHHHHHhcccChH
Q 012397 311 SAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG------KTARINPAAEDCINKLRDEFHARMSDDLNTS 384 (464)
Q Consensus 311 ~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~------~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~ 384 (464)
+.++++|++|+++.+.+..+.+.+|+|+++++.+.+.++.... .....|+|++.+++++++.+.++| ++|+++
T Consensus 659 s~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~ 737 (961)
T PRK13804 659 SVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAY-DAYDFK 737 (961)
T ss_pred hCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHH-HhcCHH
Confidence 8889999999999998888888899999988777766543221 123468999999999999999999 999999
Q ss_pred HHHHHHHHHHH-HH-HHHHhhhhcccC--chhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhh--hHhHh
Q 012397 385 HILTGAFQDAL-KF-INSSLNMLKKKQ--PKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLV--LLHVF 457 (464)
Q Consensus 385 ~al~~yl~~l~-~~-~n~~~~~~~~~~--~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~--~~~~~ 457 (464)
+|+.. +++|+ .. .|.|++..++|. .......|..+..++..+++.++.+|+ |+|+ +||+||+.|+. ..+++
T Consensus 738 ~a~~~-l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~-~aEeiw~~L~~~~~~sv~ 815 (961)
T PRK13804 738 RIYKA-LVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPF-TAEEAWLYRYPEEEVSVH 815 (961)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHhcccCCCCceE
Confidence 99999 99999 44 699999988853 222334566677888999999999999 9999 99999999983 45788
Q ss_pred cCCCC
Q 012397 458 FDDSP 462 (464)
Q Consensus 458 ~~~~~ 462 (464)
+..||
T Consensus 816 l~~wP 820 (961)
T PRK13804 816 LEQFP 820 (961)
T ss_pred ecCCC
Confidence 88887
|
|
| >PLN02843 isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=408.25 Aligned_cols=224 Identities=21% Similarity=0.180 Sum_probs=186.0
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeee-CCcccccccCCccCHHHHHH---------hcCch
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE---------RYHPL 303 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~---------~~~~d 303 (464)
+|.|+++.|+|++++|+........++.+ .||.++++| ||++. +|+|||||+||+|+|.++++ +||+|
T Consensus 563 ~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~H-G~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD 641 (974)
T PLN02843 563 YPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTH-GFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGAD 641 (974)
T ss_pred CCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEe-ccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChH
Confidence 57899999999999665444444445544 477888775 89888 89999999999999999999 79999
Q ss_pred hHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-----CCccCCChhHHHHHHHHHHHHHHHHh
Q 012397 304 ALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH-----GKTARINPAAEDCINKLRDEFHARMS 378 (464)
Q Consensus 304 alR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~-----~~~~~~d~~l~~~l~~~~~~v~~~~~ 378 (464)
++|||+++.++++|++|+.+.+.+..+.+.+|+|+++++.+.+..+... ......|+|++.+++++.+++.++|
T Consensus 642 ~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~ay- 720 (974)
T PLN02843 642 VLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEESY- 720 (974)
T ss_pred HHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999889999999999999999999999999999887776554211 1123468999999999999999999
Q ss_pred cccChHHHHHHHHHHHH--HHHHHHhhhhcccCc--hhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhh-
Q 012397 379 DDLNTSHILTGAFQDAL--KFINSSLNMLKKKQP--KQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLV- 452 (464)
Q Consensus 379 ~~~~~~~al~~yl~~l~--~~~n~~~~~~~~~~~--~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~- 452 (464)
++|+++.|+.. +++|+ ..+|.|++..++|.. ......|..+..++..+++.++.+|+ |+|+ +||+||+.|+.
T Consensus 721 e~y~f~~A~~~-i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf-~aEEiw~~L~~~ 798 (974)
T PLN02843 721 DNYQFFKIFQI-LQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPH-LAEDAWQNLPFQ 798 (974)
T ss_pred HccCHHHHHHH-HHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhcccc
Confidence 99999999999 99884 578999999999753 22334455566678889999999999 9999 99999999974
Q ss_pred -----hHhHhcCCCC
Q 012397 453 -----LLHVFFDDSP 462 (464)
Q Consensus 453 -----~~~~~~~~~~ 462 (464)
..+++++.+|
T Consensus 799 ~~~~~~~sv~~~~~P 813 (974)
T PLN02843 799 EDGSAAESVFEAGWP 813 (974)
T ss_pred ccCCCCCceEecCCC
Confidence 3578888887
|
|
| >PTZ00427 isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=402.95 Aligned_cols=213 Identities=14% Similarity=0.166 Sum_probs=175.1
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccCC-CCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
.|.|+...|.|++++|.........++.++ |+.++++ |||++. +|+|||||+||+|+|.+++++||+|++|||+++.
T Consensus 672 fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~Vlv-HG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~ 750 (1205)
T PTZ00427 672 FPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLIC-NGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINS 750 (1205)
T ss_pred CCceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEE-ccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhc
Confidence 378999999999988887767777777665 6678765 699998 9999999999999999999999999999999986
Q ss_pred -C-CCCccCCCHHHHHH-HHHHHHHHHHHHHHHHHhcCcccc-------------CCCccCCChhHHHHHHHHHHHHHHH
Q 012397 313 -H-YRSPLNYSVLQLDS-ASDAVFYIYQTLQDCEVALSPFQE-------------HGKTARINPAAEDCINKLRDEFHAR 376 (464)
Q Consensus 313 -~-~~~~~~f~~~~~~~-~~~~l~~l~~~~~~~~~~l~~~~~-------------~~~~~~~d~~l~~~l~~~~~~v~~~ 376 (464)
. .++|++|+++.+.+ .++.+.++||+++++...+..+.. .......|+|++++++++++.+.++
T Consensus 751 ~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~ 830 (1205)
T PTZ00427 751 VAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTE 830 (1205)
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 47999999999875 455688999998877665542210 0112456899999999999999999
Q ss_pred HhcccChHHHHHHHHHHHHH-HHHHHhhhhcc--cCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhh
Q 012397 377 MSDDLNTSHILTGAFQDALK-FINSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLV 452 (464)
Q Consensus 377 ~~~~~~~~~al~~yl~~l~~-~~n~~~~~~~~--~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~ 452 (464)
| ++|+++.|+.. |++|+. ..|+|++..+. |.... .+++..++.+++++|+.++.+|+ |+|+ +||+||+.|..
T Consensus 831 m-e~Y~f~~A~~~-i~~Fi~~lsnwYIe~~K~rl~~~~~-~~~~~~a~~tL~~vL~~~~~LLaPf~Pf-iaEeiyq~L~~ 906 (1205)
T PTZ00427 831 M-KAYKLYNVLPK-LLQFIENLTNWYIRLNRDRMRGSLG-EENCLQSLCTTYRTLHLFTVLMAPFTPF-ITEYIYQQLRR 906 (1205)
T ss_pred H-HccCHHHHHHH-HHHHHHHhccHHHHHcchhhccCCC-cHHHHHHHHHHHHHHHHHHHHccccchH-HHHHHHHHhhh
Confidence 9 99999999999 999998 45888886654 54211 23455678999999999999999 9998 99999999953
|
|
| >KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=352.20 Aligned_cols=420 Identities=15% Similarity=0.112 Sum_probs=322.7
Q ss_pred CCCcceEEEeCCCCC--CcCCccc-chhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHH
Q 012397 36 VRGKVGMYVCGVTAY--DLSHLGH-ARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQE 112 (464)
Q Consensus 36 ~~~~~~v~~~~P~p~--G~lHiGH-ar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~ 112 (464)
.+++..+++++..|| ..+|+|| ++..+.||++||+.+.+|++..|+||+|++|++++.+|.++|.+|+++|++|++.
T Consensus 10 ~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~i 89 (567)
T KOG1247|consen 10 APNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGI 89 (567)
T ss_pred CCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHhcchh
Confidence 367778888987777 9999999 6899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCCC--CCc--
Q 012397 113 YLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRL--SGQ-- 174 (464)
Q Consensus 113 ~~~~l~~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~l--~~~-- 174 (464)
+.+.+++++|++ |.|.|++ .+.+.+|.+|.+|+++|+..+.+..+.||+.| ||.||.= .|.
T Consensus 90 hk~vy~Wf~Idf-D~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ARGDqc 168 (567)
T KOG1247|consen 90 HKVVYDWFKIDF-DEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDARGDQC 168 (567)
T ss_pred HHHHHHhhcccc-cccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCccccchhh
Confidence 999999999995 8888776 67789999999999999999888899999874 7766531 111
Q ss_pred ----------cccccc-----cCCCc--------ccCCc--------ccCcccccccccc-------------cCCCCcc
Q 012397 175 ----------RLENNR-----AGERV--------AVDSR--------KRNPADFALWKAA-------------KAGEPSW 210 (464)
Q Consensus 175 ----------~~~~~~-----~g~~~--------~~~~~--------k~~~~d~~~w~~~-------------~~g~~~~ 210 (464)
++...+ .+..+ +++.. ++.. ---.|... ++..+||
T Consensus 169 d~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~-~~~~WS~Na~~it~sWlk~gl~pRCiTR 247 (567)
T KOG1247|consen 169 DKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTL-VEGDWSQNAQNITRSWLKDGLKPRCITR 247 (567)
T ss_pred hhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhcc-ccCCCccchHHHHHHHHHcccccccccc
Confidence 111111 01110 00000 0000 00013211 2335689
Q ss_pred cCCCCCCCCc----------hhhHH----------HHHHHhhcCCCe---eEEEecccCccccchHHHHHHhhccCC-CC
Q 012397 211 DSPWGPGRPG----------WHIEC----------SAMSAHYLSSKF---DIHGGGIDLIFPHHENEIAQSCAACQD-SN 266 (464)
Q Consensus 211 ~~~wg~~~P~----------w~~~~----------~~~~~~~~~~~~---~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~ 266 (464)
+..||.++|- ||++. ..-+.++|..|- -+++.|||++.||.+..|+.+.+.+.+ +.
T Consensus 248 DLkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~t~ 327 (567)
T KOG1247|consen 248 DLKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENYTV 327 (567)
T ss_pred ccccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcCCCCchh
Confidence 9999999992 87653 122345566554 378999999999999999988766543 33
Q ss_pred ccEEEEeeeeeeCCcccccccCCccCHHHHHH-hcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH--HHHHHHHHHHH
Q 012397 267 VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDC 342 (464)
Q Consensus 267 ~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~ 342 (464)
.+.+...+++..+..|||||+|..|.-.++.+ ..+++..||||++. |..+|..|+|+.+....|+ +.||-|++.|+
T Consensus 328 v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~ 407 (567)
T KOG1247|consen 328 VHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRV 407 (567)
T ss_pred heeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33334457888899999999999999888876 58999999999997 8899999999999977664 55666666666
Q ss_pred HHhcCccccCC----CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHH
Q 012397 343 EVALSPFQEHG----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI 418 (464)
Q Consensus 343 ~~~l~~~~~~~----~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~ 418 (464)
.+++.....+. ....-++.+++.++++..+..++| +....++++.. +|++++..|.|++.++.|+....+..|.
T Consensus 408 l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~m-e~vklr~~l~~-~m~is~~GNqylQ~~~~~k~~~~~r~r~ 485 (567)
T KOG1247|consen 408 LKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAM-EKVKLREALKT-AMEISRRGNQYLQENTDNKLYEESRQRA 485 (567)
T ss_pred HHHHHHhhCCcccceeecCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHhhhHHHhcccccchhhhccccc
Confidence 55543322221 224458899999999999999999 99999999999 9999999999999998877544333344
Q ss_pred HH-HHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCC
Q 012397 419 ES-LRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDD 460 (464)
Q Consensus 419 ~~-~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~ 460 (464)
.. +...+.++.-+..||. +||. ++.+|.++|+.|....++.
T Consensus 486 ~~vi~~a~nii~lvs~ll~P~mP~-~s~~I~kqlnlp~~~~~~~ 528 (567)
T KOG1247|consen 486 GTVIGLAANIIYLVSVLLYPYMPT-TSAEILKQLNLPETLFPDR 528 (567)
T ss_pred ceeeehhhHHHHHHHHHhcccccc-chHHHHHHhCCccccCCCc
Confidence 43 5677888888999999 9999 9999999999997666553
|
|
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=395.54 Aligned_cols=399 Identities=13% Similarity=0.115 Sum_probs=290.4
Q ss_pred eEEEeCCCCCCc-CCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 012397 41 GMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (464)
Q Consensus 41 ~v~~~~P~p~G~-lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (464)
.+....|.|||. |||||+++++++|+++|+.|++|++|+|+.|+|+||.+++.+|.+.|..|.++++++.+.+.+.+++
T Consensus 113 ~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~ 192 (963)
T PLN02563 113 YVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS 192 (963)
T ss_pred EEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence 333356888896 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-CCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------CCCCCCC------------
Q 012397 120 LQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYGRL------------ 171 (464)
Q Consensus 120 lgi~~~-~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~~~~g~l------------ 171 (464)
||++++ +.+.+|+ +|.+.+|.+|.+|+++|++|++...++||+.| |..||..
T Consensus 193 lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~ 272 (963)
T PLN02563 193 LGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLK 272 (963)
T ss_pred hCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEe
Confidence 999863 2344444 79999999999999999999999999999884 4445431
Q ss_pred -----------------------------------------CC-------cccc---------------------c----
Q 012397 172 -----------------------------------------SG-------QRLE---------------------N---- 178 (464)
Q Consensus 172 -----------------------------------------~~-------~~~~---------------------~---- 178 (464)
.+ ..+. .
T Consensus 273 it~ya~~L~~~l~~~~wp~~v~~~q~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~ 352 (963)
T PLN02563 273 ITAYADRLLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSS 352 (963)
T ss_pred cchhHHHHHHhhhhcCCCHHHHHHHHHhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHh
Confidence 00 0000 0
Q ss_pred c------------c----------------------cCCCcc--c---------------CC--------cccCcccccc
Q 012397 179 N------------R----------------------AGERVA--V---------------DS--------RKRNPADFAL 199 (464)
Q Consensus 179 ~------------~----------------------~g~~~~--~---------------~~--------~k~~~~d~~~ 199 (464)
+ . .|..+. + +. .-+.++||..
T Consensus 353 ~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~g~~~g~~~~~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~ 432 (963)
T PLN02563 353 LTTAEQKEAVEEYVDAASRKSDLERTELQKEKTGVFTGSYAINPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEF 432 (963)
T ss_pred hhcccchHHHHHHHHHHhchhHHhhhhccceecccccCcEEeccCCCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHH
Confidence 0 0 000000 0 00 0000012211
Q ss_pred cccc--------------------------------------------------------------------cCCCCccc
Q 012397 200 WKAA--------------------------------------------------------------------KAGEPSWD 211 (464)
Q Consensus 200 w~~~--------------------------------------------------------------------~~g~~~~~ 211 (464)
++.. ++..++|+
T Consensus 433 a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQ 512 (963)
T PLN02563 433 AQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQ 512 (963)
T ss_pred HHHcCCCceeeeccCccccccccccccCceeEecCCCcccccCCcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeee
Confidence 1000 01112345
Q ss_pred CCCCCCCCchhhH-HH------H---------H--------------------------------------------HH-
Q 012397 212 SPWGPGRPGWHIE-CS------A---------M--------------------------------------------SA- 230 (464)
Q Consensus 212 ~~wg~~~P~w~~~-~~------~---------~--------------------------------------------~~- 230 (464)
..||.++|.|+.. |. . + ++
T Consensus 513 RyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy 592 (963)
T PLN02563 513 RYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWY 592 (963)
T ss_pred cccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHH
Confidence 5799999987632 10 0 0 00
Q ss_pred --hh---------c-------CCCeeEEEecccCccccc---hHHHHHHhhcc----CCCCccEEEEeeeeee-------
Q 012397 231 --HY---------L-------SSKFDIHGGGIDLIFPHH---ENEIAQSCAAC----QDSNVSYWMHNGHVTN------- 278 (464)
Q Consensus 231 --~~---------~-------~~~~~i~~~G~D~~~~h~---~~~~a~~~a~~----~~~~~~~~~~~~~v~~------- 278 (464)
.+ + ..|+|++++|.||...|. .+|...+...+ ..|+.++ +.+|||+.
T Consensus 593 ~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~l-l~qGmVl~~~~~~~~ 671 (963)
T PLN02563 593 YLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCL-VNQGMILGEVEYTAF 671 (963)
T ss_pred HHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHH-hccceeecCccccce
Confidence 00 0 137999999999765553 34444443333 3577777 55799983
Q ss_pred ---CCc---------------------------------------------ccccccCCccCHHHHHHhcCchhHHHHHh
Q 012397 279 ---NNE---------------------------------------------KMSKSLGNFFTIRQITERYHPLALRHFLI 310 (464)
Q Consensus 279 ---~G~---------------------------------------------KmSks~gn~i~~~dll~~~~~dalR~~ll 310 (464)
+|+ |||||+||+|+|.+++++||+|++|||++
T Consensus 672 ~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll 751 (963)
T PLN02563 672 KDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEM 751 (963)
T ss_pred ecCCCcCcccccccccccccccccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHH
Confidence 455 99999999999999999999999999999
Q ss_pred hc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCC--ccCCChhHHHHHHHHHHHHHHHHhcccChHHHH
Q 012397 311 SA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK--TARINPAAEDCINKLRDEFHARMSDDLNTSHIL 387 (464)
Q Consensus 311 ~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~--~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al 387 (464)
.. ++.++..|+.+.+....+.+.++|+.+............... ....|++++.+++++++++.++| ++|+++.|+
T Consensus 752 ~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~~~~~~~~~~~~~~~~~d~~ll~kl~~~ikkVte~~-e~y~FntAi 830 (963)
T PLN02563 752 FMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKVTEEI-ESTRFNTAI 830 (963)
T ss_pred hCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhhcccccCccccccCCcchHHHHHHHHHHHHHHHHHH-HcCCHHHHH
Confidence 87 788999999999999999999999987543111111111111 12467899999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 388 TGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 388 ~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
+. +++|++.+++ |.. ...++++.++.+|+ |+|+ +||+||+.|+...+++.+.||
T Consensus 831 ~~-lmef~n~l~~-------~~~------------~~~~~l~~ll~LLaPf~Ph-iaEELW~~Lg~~~sv~~~~WP 885 (963)
T PLN02563 831 SA-MMEFTNAAYK-------WDK------------VPREAIEPFVLLLSPYAPH-LAEELWFRLGHSNSLAYEPWP 885 (963)
T ss_pred HH-HHHHHHHHhC-------chH------------HHHHHHHHHHHHHHhhhhh-HHHHHHHHcCCCCeeeeCCCC
Confidence 99 9999987653 210 23578999999999 9999 999999999865678888888
|
|
| >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=383.49 Aligned_cols=422 Identities=19% Similarity=0.214 Sum_probs=313.6
Q ss_pred CCcceEEEeCC-CCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH-cCC--------------
Q 012397 37 RGKVGMYVCGV-TAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-LGE-------------- 100 (464)
Q Consensus 37 ~~~~~v~~~~P-~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~-~g~-------------- 100 (464)
+++..+++-|| ..||.+|||||-+-++-|++.|+..++|++|.++.|+|.||.+|+.++++ .|.
T Consensus 47 g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr 126 (933)
T COG0060 47 GKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFR 126 (933)
T ss_pred CCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHH
Confidence 45666777765 44599999999999999999999999999999999999999999988765 342
Q ss_pred -ChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc---hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC-----------
Q 012397 101 -NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS----------- 165 (464)
Q Consensus 101 -~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s---~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~----------- 165 (464)
.|.+++.++.+.+.+.+++||+..+-..+..| ++.+.+...|.++.+||++|++...++||+.|-
T Consensus 127 ~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~ 206 (933)
T COG0060 127 EKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYG 206 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhccc
Confidence 16788889999999999999997432222222 678889999999999999999999999998851
Q ss_pred -----------CCC------CC-------------------------------------C--------------------
Q 012397 166 -----------PNY------GR-------------------------------------L-------------------- 171 (464)
Q Consensus 166 -----------~~~------g~-------------------------------------l-------------------- 171 (464)
+-- +. +
T Consensus 207 d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl 286 (933)
T COG0060 207 DVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVL 286 (933)
T ss_pred ccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEe
Confidence 100 00 0
Q ss_pred ---CCccccccc-----------------cCCCcccCCc----ccCc----cccc-------------------------
Q 012397 172 ---SGQRLENNR-----------------AGERVAVDSR----KRNP----ADFA------------------------- 198 (464)
Q Consensus 172 ---~~~~~~~~~-----------------~g~~~~~~~~----k~~~----~d~~------------------------- 198 (464)
.|.+++.+. .|+.|..+.. ...| .||.
T Consensus 287 ~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~ 366 (933)
T COG0060 287 ETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAP 366 (933)
T ss_pred EEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccch
Confidence 000000000 0000000000 0000 0000
Q ss_pred ------------------------------------ccccc---------------------------------------
Q 012397 199 ------------------------------------LWKAA--------------------------------------- 203 (464)
Q Consensus 199 ------------------------------------~w~~~--------------------------------------- 203 (464)
.|+..
T Consensus 367 ~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P~~~~~R 446 (933)
T COG0060 367 KYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDWGKNR 446 (933)
T ss_pred hhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEEChhHHHH
Confidence 12221
Q ss_pred --------cCCCCcccCCCCCCCCchhhH-H----------HHHH-----------H------h----------------
Q 012397 204 --------KAGEPSWDSPWGPGRPGWHIE-C----------SAMS-----------A------H---------------- 231 (464)
Q Consensus 204 --------~~g~~~~~~~wg~~~P~w~~~-~----------~~~~-----------~------~---------------- 231 (464)
.+..++|+..||.|+|.|..+ | .... + +
T Consensus 447 ~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~ 526 (933)
T COG0060 447 FGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVP 526 (933)
T ss_pred HHHHHcCCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecC
Confidence 011235566799999988421 0 0000 0 0
Q ss_pred -----hc----------------CCCe---eEEEecccCccccchHHHHHHhhccCC-CCccEEEEeeeeee-CCccccc
Q 012397 232 -----YL----------------SSKF---DIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSK 285 (464)
Q Consensus 232 -----~~----------------~~~~---~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~-~G~KmSk 285 (464)
+| ..+. |+...|.|+.+-++-.......++.+. |+.+++ .|||++. +|+||||
T Consensus 527 DvlDVWFDSGs~~~a~~~~~~~~~~~~~~aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vl-tHGfvlDe~GrKMSK 605 (933)
T COG0060 527 DVLDVWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVL-THGFVLDEKGRKMSK 605 (933)
T ss_pred cceEEEEcCCCCcccccCCcccccCccccCcEEEEeccccchhHHHHHHHHHHHcCCchHHHHh-hcccEECCCCCCccc
Confidence 01 1233 899999995444332233334455554 566664 4699998 9999999
Q ss_pred ccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC------CccCCC
Q 012397 286 SLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG------KTARIN 359 (464)
Q Consensus 286 s~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~------~~~~~d 359 (464)
|+||+|+|.|++++||+|+||+|++++++..|+.|+++.+++....+..++|+++++..++.++.+.. .....|
T Consensus 606 SlGN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~D 685 (933)
T COG0060 606 SLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELD 685 (933)
T ss_pred cCCCcCCHHHHHHhhCchheeeeeeecCchhccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999988876532 124679
Q ss_pred hhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH-HHH-HHHhhhhc--ccCchhhhhhHHHHHHHHHHHHHHHHHhh
Q 012397 360 PAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL-KFI-NSSLNMLK--KKQPKQQQLSLIESLRKIENEVKEVLRIL 435 (464)
Q Consensus 360 ~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~-~~~-n~~~~~~~--~~~~~~~~~~r~~~~~~~~~~l~~~l~lL 435 (464)
+|++.+++++.+++.++| ++|+++.++.. |++|+ ..+ |.|++..| .|.+.+.+.+|++...+++++|..+..+|
T Consensus 686 rwil~rl~~l~~~v~eay-e~y~f~~v~~~-l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~l 763 (933)
T COG0060 686 RWILSRLNSLVKEVREAY-ENYDFHKVVRA-LMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLL 763 (933)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999 99999 566 55556554 48865677889999999999999999999
Q ss_pred c-cCCCccHHHHHHHhhhh---HhHhcCCCC
Q 012397 436 G-LLPPGAYSEVKTAFLVL---LHVFFDDSP 462 (464)
Q Consensus 436 g-i~p~~~~e~i~~~l~~~---~~~~~~~~~ 462 (464)
+ |+|+ +||+|||.|... .+||++++|
T Consensus 764 APilPf-taEeiw~~l~~~~~~eSVhl~~~p 793 (933)
T COG0060 764 APILPF-TAEEIWQNLPGERKEESVHLEDWP 793 (933)
T ss_pred cccchh-hHHHHHHhCccCCCCceeEeccCC
Confidence 9 9998 999999999666 899999998
|
|
| >cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=364.82 Aligned_cols=279 Identities=16% Similarity=0.163 Sum_probs=207.4
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc---------CCC-------hH
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL---------GEN-------PL 103 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~---------g~~-------~~ 103 (464)
..|..++|+|||.|||||+++++++|+++|++|++|++|.+++|+|+||.+|+..|+++ +++ |+
T Consensus 3 f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~ 82 (382)
T cd00817 3 FVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCW 82 (382)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHH
Confidence 45666678888999999999999999999999999999999999999999999988764 344 35
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC-CCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC---------CCCCCCC
Q 012397 104 SLSNRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------SPNYGRL 171 (464)
Q Consensus 104 ~~~~~~~~~~~~~l~~lgi~~~-~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~---------~~~~g~l 171 (464)
++++++.+.+.+++++|||+.+ +.+.+|+ +|.+.++++|.+|.++|++|++...++||+.| |.+||.-
T Consensus 83 ~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~evc~~cg~~ 162 (382)
T cd00817 83 EWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEVCSRSGDV 162 (382)
T ss_pred HHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchhcccCCCe
Confidence 6899999999999999999852 2455554 68899999999999999999999999999885 4556531
Q ss_pred -----CCcccccccc-CCCcccCCcccCc---------cccccccc-ccCCCCcccCCCCCCCCchhhH-----------
Q 012397 172 -----SGQRLENNRA-GERVAVDSRKRNP---------ADFALWKA-AKAGEPSWDSPWGPGRPGWHIE----------- 224 (464)
Q Consensus 172 -----~~~~~~~~~~-g~~~~~~~~k~~~---------~d~~~w~~-~~~g~~~~~~~wg~~~P~w~~~----------- 224 (464)
+....-++.. .+.+ .+..+.++ ..+.-|.. ..+-.++|+..||+++|.|+..
T Consensus 163 ~~~~~~~qwf~~l~~~~~~l-~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~ 241 (382)
T cd00817 163 IEPLLKPQWFVKVKDLAKKA-LEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREE 241 (382)
T ss_pred EEEEecCeeEEehHHHHHHH-HHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEEecchh
Confidence 0000000000 0000 00001111 00001211 2345568888999999976431
Q ss_pred ---------------------------------HH-HHHH-hh------c--CCCeeEEEecccCccccchHHHHHHhhc
Q 012397 225 ---------------------------------CS-AMSA-HY------L--SSKFDIHGGGIDLIFPHHENEIAQSCAA 261 (464)
Q Consensus 225 ---------------------------------~~-~~~~-~~------~--~~~~~i~~~G~D~~~~h~~~~~a~~~a~ 261 (464)
.. .++. .+ + .+|.|+|++|+|++++|+.+++++..++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~ 321 (382)
T cd00817 242 DEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKL 321 (382)
T ss_pred HHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhhcCCCCeeeeecCcCchHHHHHHHHHHHh
Confidence 10 0000 00 1 1478999999999999999999888877
Q ss_pred cCC-CCccEEEEeeeee-eCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCC
Q 012397 262 CQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNY 320 (464)
Q Consensus 262 ~~~-~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f 320 (464)
.+. ++..+++ ||+++ .+|+|||||+||+|+|.|+++.+|+|++|||+++. ++++|.+|
T Consensus 322 ~g~~p~~~v~~-hg~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 322 TGKLPFKEVYL-HGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred hCCCchHHeEe-eeeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 664 4577766 58998 59999999999999999999999999999999987 78888876
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=355.95 Aligned_cols=361 Identities=17% Similarity=0.118 Sum_probs=270.7
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHH-------HHH------------
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRR-------AND------------ 97 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~-------a~~------------ 97 (464)
+++|.|..+||||+|||||||+|++++||+|||+|++.||+|...++++|+|..+-.- ..+
T Consensus 116 ~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~l 195 (577)
T COG0018 116 GKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYL 195 (577)
T ss_pred CCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHH
Confidence 5799999999999999999999999999999999999999999999999998644211 101
Q ss_pred --------------cCCC--------------------hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc--hhHHHHHHH
Q 012397 98 --------------LGEN--------------------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVS--DHMEQIKDM 141 (464)
Q Consensus 98 --------------~g~~--------------------~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s--~~~~~~~~~ 141 (464)
.+.+ |+.+++.....|.++|++|||.+ |.+...+ .+...+.++
T Consensus 196 g~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~f-D~~~~E~e~~~~~~~~~v 274 (577)
T COG0018 196 GEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKF-DVYDSEGESFYNGKVEKV 274 (577)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCccc-ceeeccchhhhcccHHHH
Confidence 0100 12267777888999999999986 5554333 334468899
Q ss_pred HHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCch
Q 012397 142 ITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGW 221 (464)
Q Consensus 142 ~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w 221 (464)
+..|.++|++|+.++..+.+...+... | ++.|..+-| ++|..++.+.
T Consensus 275 v~~L~~~~~~~e~~GA~~vdl~~~~~~-------------g----------d~~~~vl~K--SDGt~lY~t~-------- 321 (577)
T COG0018 275 VEDLEEKGLLYEDDGALVVDLLKFKKF-------------G----------DDKDRVLQK--SDGTYLYFTR-------- 321 (577)
T ss_pred HHHHHhcCCEeeeCCeEEEehhhhhhc-------------C----------CCCCeEEEE--cCCCeeeehh--------
Confidence 999999999998766655443321111 1 111322322 3444322110
Q ss_pred hhHHHHHHHhh-cCCCeeEEEecccCccccchHHHHHHh----hccCCCCccEEEEeeeeee---CCcccccccCCccCH
Q 012397 222 HIECSAMSAHY-LSSKFDIHGGGIDLIFPHHENEIAQSC----AACQDSNVSYWMHNGHVTN---NNEKMSKSLGNFFTI 293 (464)
Q Consensus 222 ~~~~~~~~~~~-~~~~~~i~~~G~D~~~~h~~~~~a~~~----a~~~~~~~~~~~~~~~v~~---~G~KmSks~gn~i~~ 293 (464)
.+++ ...++ .+....|++.|.| |+ ..+.++. +++..+...+..|.++.++ +|.|||||.|++|++
T Consensus 322 DIAy--~~~K~~~~~d~~IyV~gad----q~-~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl 394 (577)
T COG0018 322 DIAY--HLYKFERGFDKLIYVLGAD----QH-GHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTL 394 (577)
T ss_pred HHHH--HHHHHhcCCCEEEEEeCCc----ch-hHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCceEEH
Confidence 1222 11222 5557789999999 55 2333333 3344444355677766555 577999999999999
Q ss_pred HHHHHhcC----------------------chhHHHHHhhcCCCCccCCCHHHHHHHHH-HHHHHHHHHHHHHHhcCccc
Q 012397 294 RQITERYH----------------------PLALRHFLISAHYRSPLNYSVLQLDSASD-AVFYIYQTLQDCEVALSPFQ 350 (464)
Q Consensus 294 ~dll~~~~----------------------~dalR~~ll~~~~~~~~~f~~~~~~~~~~-~l~~l~~~~~~~~~~l~~~~ 350 (464)
+|+++..+ .+|+||++++.++.++++|+|+.+.+..+ ...|+||+++|++|+++++.
T Consensus 395 ~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~ 474 (577)
T COG0018 395 DDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAG 474 (577)
T ss_pred HHHHHHHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhcc
Confidence 99999888 99999999999999999999999998765 67799999999999998875
Q ss_pred cCC----------CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchh--hhhhHH
Q 012397 351 EHG----------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ--QQLSLI 418 (464)
Q Consensus 351 ~~~----------~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~--~~~~r~ 418 (464)
... ...+.+..|+.+|.+++..+.++. +++. |+.++.||++++..||+||+.|++....+ ...+|+
T Consensus 475 e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa-~~~~-Ph~la~YL~~LA~~Fn~fY~~~~Vl~~~~~~~~~aRL 552 (577)
T COG0018 475 EDELDLSTEADALLTELEERELVKKLLEFPEVLEEAA-EELE-PHRLANYLYDLAGSFNSFYNACPVLGAENEELRAARL 552 (577)
T ss_pred ccccccccccchhccChHHHHHHHHHHHhHHHHHHHH-HhcC-chHHHHHHHHHHHHHHHHHhhCCcCCCCcHHHHHHHH
Confidence 211 113346889999999999999999 6765 88888889999999999999999987544 467999
Q ss_pred HHHHHHHHHHHHHHHhhccCCC
Q 012397 419 ESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 419 ~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
.++.++..+|++++.||||.|+
T Consensus 553 ~L~~a~~~vL~ngL~LLGI~~~ 574 (577)
T COG0018 553 ALVKATRQVLKNGLDLLGIEAP 574 (577)
T ss_pred HHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999876
|
|
| >PRK12451 arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=360.10 Aligned_cols=360 Identities=14% Similarity=0.072 Sum_probs=273.7
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHH---HHHHcCC-------------
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIR---RANDLGE------------- 100 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~---~a~~~g~------------- 100 (464)
++++.|..++|||+|||||||+|++++||+|+|+|+++|++|...++++|+|..+-. ...+.|.
T Consensus 112 ~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~ 191 (562)
T PRK12451 112 EKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELF 191 (562)
T ss_pred CCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHHH
Confidence 578999999999999999999999999999999999999999999999999864421 1111110
Q ss_pred ------------------------------C------hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHH
Q 012397 101 ------------------------------N------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQ 144 (464)
Q Consensus 101 ------------------------------~------~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~ 144 (464)
+ ++.+++...+.|.++|++|||.+ |.+...|.+.+.+.+++++
T Consensus 192 ~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~f-D~~~~es~~~~~~~~v~~~ 270 (562)
T PRK12451 192 KLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEF-TNFQGEAFYNDLMEDFIGI 270 (562)
T ss_pred HHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-eeecchHhhhhhHHHHHHH
Confidence 1 34556777788999999999996 6666667777778999999
Q ss_pred HHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhH
Q 012397 145 IINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIE 224 (464)
Q Consensus 145 L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~ 224 (464)
|.++|++|+.++..|.+... .|. + |..+-| ++|..++... .++
T Consensus 271 L~~~g~~~e~dGa~~~~~~~---~g~-----------------------~-~~vl~k--sDGt~~Y~t~--------DiA 313 (562)
T PRK12451 271 LEEHDLLEESEGALVVNLEE---EGM-----------------------P-PCLIRK--SDGATIYATR--------DLT 313 (562)
T ss_pred HHHCCCEEecCCeEEEEecc---cCC-----------------------C-ceEEEe--CCCccccchh--------HHH
Confidence 99999999988888765321 110 0 222222 3454433210 112
Q ss_pred HHHHHHhhcCCCeeEEEecccCccccchH---HHHHHhhccCCCCccE-EEEeeeeeeCCcccccccCCccCHHHHHHh-
Q 012397 225 CSAMSAHYLSSKFDIHGGGIDLIFPHHEN---EIAQSCAACQDSNVSY-WMHNGHVTNNNEKMSKSLGNFFTIRQITER- 299 (464)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~G~D~~~~h~~~---~~a~~~a~~~~~~~~~-~~~~~~v~~~G~KmSks~gn~i~~~dll~~- 299 (464)
+......-++.+..|++.|.| |+.. ..+.+.+++..+..++ .+..|+|.++|+|||||+|++|+++||++.
T Consensus 314 ~~~~k~~~~~~d~~IyV~g~d----q~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLldea 389 (562)
T PRK12451 314 AALYRQNTFGFDKALYVVGPE----QSLHFNQFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVLEEA 389 (562)
T ss_pred HHHHHhhccCCCEEEEEeCCc----HHHHHHHHHHHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHHHHH
Confidence 111111114556779999999 5432 2233344453322222 233467777999999999999999999996
Q ss_pred ------------------------cCchhHHHHHhhcCCCCccCCCHHHHHHHHHH-HHHHHHHHHHHHHhcCccccCC-
Q 012397 300 ------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSASDA-VFYIYQTLQDCEVALSPFQEHG- 353 (464)
Q Consensus 300 ------------------------~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~-l~~l~~~~~~~~~~l~~~~~~~- 353 (464)
+|.+|+||++++.++.++++||++.+.+..++ -.|+||+++|++|+++++....
T Consensus 390 ~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~~~~~ 469 (562)
T PRK12451 390 IELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESVEFE 469 (562)
T ss_pred HHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcCCCcc
Confidence 77999999999999999999999998877633 4499999999999998874211
Q ss_pred -----CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHH
Q 012397 354 -----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEV 428 (464)
Q Consensus 354 -----~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l 428 (464)
..++.+..|+..+.++++.+.+++ ++++++.++.. +++++..+|+||+.+++...+.....|+.++.++..+|
T Consensus 470 ~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~-e~~ep~~~~~y-l~~LA~~fN~fy~~~~Vl~~~~~~~~RL~L~~a~~~vL 547 (562)
T PRK12451 470 TCTFALKDDYSWSVVKLLNKFPQVIEAAF-NKNEPSVISKY-VLDVAQSFNKYYGNVRILEESAEKDSRLALVYAVTVVL 547 (562)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 114566789999999999999999 99998888777 99999999999999998754445679999999999999
Q ss_pred HHHHHhhccCCC
Q 012397 429 KEVLRILGLLPP 440 (464)
Q Consensus 429 ~~~l~lLgi~p~ 440 (464)
++++.||||.|+
T Consensus 548 ~~gL~LLGI~~~ 559 (562)
T PRK12451 548 KEGLRLLGVEAP 559 (562)
T ss_pred HHHHHhcCCCcc
Confidence 999999999887
|
|
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=379.67 Aligned_cols=210 Identities=19% Similarity=0.168 Sum_probs=180.0
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~- 312 (464)
+|+|++++|+|++++|+.++.....++.+ .++++-+++|||++++|+|||||+||+|+|.|++++||+|++|||+++.
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~ 608 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSA 608 (897)
T ss_pred CCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCC
Confidence 47899999999999999998777776655 3554445778999999999999999999999999999999999999986
Q ss_pred CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q 012397 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 392 (464)
Q Consensus 313 ~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~ 392 (464)
++++|.+|+++.+.+..+.+.+++++++++...... ......|+|++.+++++++++.++| ++|+++.|+.. ++
T Consensus 609 ~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~~----~~~~~~D~wils~l~~~i~~v~~~~-e~~~~~~A~~~-i~ 682 (897)
T PRK12300 609 ELLQDADWREKEVESVRRQLERFYELAKELIEIGGE----EELRFIDKWLLSRLNRIIKETTEAM-ESFQTRDAVQE-AF 682 (897)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCc----cccCHhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HH
Confidence 899999999999999999999999988765432211 1234578999999999999999999 99999999988 64
Q ss_pred -HHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 393 -DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 393 -~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
.+.+.+|+|++.+++ ....++.++++.++.+|+ |+|+ +||+||+.|+..-+++++.||
T Consensus 683 ~~l~~~~n~Yi~~~k~-----------~~~~~l~~~l~~~~~lLaPf~P~-~aEeiw~~L~~~~sv~~~~wP 742 (897)
T PRK12300 683 YELLNDLRWYLRRVGE-----------ANNKVLREVLEIWIRLLAPFTPH-LAEELWHKLGGEGFVSLEKWP 742 (897)
T ss_pred HHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHcCCCCeEEeCCCC
Confidence 777889999987664 345678899999999999 9999 999999999866688899888
|
|
| >cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-44 Score=350.87 Aligned_cols=271 Identities=17% Similarity=0.144 Sum_probs=205.5
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (464)
..|..+.|+|||.+||||+|+++.+|+++|++|++|++|.++.|+||+|++|+.+|+++|++|+++++++.+.|.+++++
T Consensus 2 ~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~ 81 (314)
T cd00812 2 FYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKR 81 (314)
T ss_pred eEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45666778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC--CCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCC----ccccccccCCCcccCCcc
Q 012397 120 LQCLPPTY--QPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSG----QRLENNRAGERVAVDSRK 191 (464)
Q Consensus 120 lgi~~~~~--~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~----~~~~~~~~g~~~~~~~~k 191 (464)
|||++ |. +.+++ +|.+.++++|.+|.++|++|+++..++||..+..-+=+++. ..+.+..+.... .+...
T Consensus 82 lgi~~-d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~~~-~p~~~ 159 (314)
T cd00812 82 MGFSY-DWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKLDG-WPEEV 159 (314)
T ss_pred hccce-ecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeCccceEEEEcCcHHHHHHHHHHHHhcCc-CCHHH
Confidence 99985 52 33443 68889999999999999999999999999443111111210 011111010000 00000
Q ss_pred cCcccccccccccCCCCcccCCCCCCCCc------hhhHHH---HHH-------------------HhhcCCCeeEEEec
Q 012397 192 RNPADFALWKAAKAGEPSWDSPWGPGRPG------WHIECS---AMS-------------------AHYLSSKFDIHGGG 243 (464)
Q Consensus 192 ~~~~d~~~w~~~~~g~~~~~~~wg~~~P~------w~~~~~---~~~-------------------~~~~~~~~~i~~~G 243 (464)
. +....|.. ++|+..||+++|. |.+++. .+. ..+| +|.|++++|
T Consensus 160 ~--~~~~~~l~-----isR~~~wGipvP~~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w-~p~di~v~G 231 (314)
T cd00812 160 R--AMQENWIG-----CSRQRYWGTPIPWTDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYW-YPVDIYIGG 231 (314)
T ss_pred H--HHHHHHhe-----eeeecCCcCCcCcccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHh-CCCeeeecc
Confidence 0 11122332 6788899999994 443321 010 0122 378999999
Q ss_pred ccCccccc---hHHHHHHhhccC---CCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCc
Q 012397 244 IDLIFPHH---ENEIAQSCAACQ---DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317 (464)
Q Consensus 244 ~D~~~~h~---~~~~a~~~a~~~---~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~ 317 (464)
+|++++|+ .++++.+.+.+. .++.++. ++|||+++|+|||||+||+|++.|+++++|+|++||++++..+ ++
T Consensus 232 ~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~-~~g~v~~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~ 309 (314)
T cd00812 232 KEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLI-VQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP-PD 309 (314)
T ss_pred hhHHHHHHHHHHHHHHHHcCcccccccCcHHhe-ecceEecCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-cC
Confidence 99999997 567777776664 5566664 6899999999999999999999999999999999999999865 89
Q ss_pred cCCCH
Q 012397 318 LNYSV 322 (464)
Q Consensus 318 ~~f~~ 322 (464)
.+|+|
T Consensus 310 ~~f~~ 314 (314)
T cd00812 310 ADFDW 314 (314)
T ss_pred CCCCC
Confidence 99875
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=364.48 Aligned_cols=415 Identities=17% Similarity=0.179 Sum_probs=297.0
Q ss_pred CcceeecccCCC-Cc-ceEEEeCCCCC--CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCC
Q 012397 26 TQQKELFTPIVR-GK-VGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGEN 101 (464)
Q Consensus 26 ~~~~~~~~~~~~-~~-~~v~~~~P~p~--G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~ 101 (464)
+.+...|++..+ ++ ..+|++.|-|| |.|||||+|+++++|++||+.|++|++|++..|+|-.|.+++..|.+.|.+
T Consensus 18 W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~ 97 (814)
T COG0495 18 WEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTD 97 (814)
T ss_pred HHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCC
Confidence 445567777554 22 36777775555 999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCC--CCCCCcc-hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------C
Q 012397 102 PLSLSNRYCQEYLVDMADLQCLPP--TYQPRVS-DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------S 165 (464)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~lgi~~~--~~~~r~s-~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~ 165 (464)
|..+++.+.+.++++|+.||.+++ ..+..+. +|.+.+|.+|.+|.++|++|+++..+.||+.+ |
T Consensus 98 P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~ 177 (814)
T COG0495 98 PAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGC 177 (814)
T ss_pred hHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCc
Confidence 999999999999999999999852 1222222 89999999999999999999999999999984 4
Q ss_pred CCCCCC-------------CC--------------ccccc-------------------cccCC--CcccC---------
Q 012397 166 PNYGRL-------------SG--------------QRLEN-------------------NRAGE--RVAVD--------- 188 (464)
Q Consensus 166 ~~~g~l-------------~~--------------~~~~~-------------------~~~g~--~~~~~--------- 188 (464)
-+||.. +. ...+. ...|. ....+
T Consensus 178 ~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~ 257 (814)
T COG0495 178 WRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTL 257 (814)
T ss_pred ccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceeeeeeeccCccc
Confidence 455530 00 00000 00000 00000
Q ss_pred ---------------------C----------------------------------cccCc-------------------
Q 012397 189 ---------------------S----------------------------------RKRNP------------------- 194 (464)
Q Consensus 189 ---------------------~----------------------------------~k~~~------------------- 194 (464)
. +..+|
T Consensus 258 ~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~yg 337 (814)
T COG0495 258 FGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYG 337 (814)
T ss_pred cCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCCcceeccccccCCCCCCcCCEEEeCccccccc
Confidence 0 00000
Q ss_pred ------------ccccccccc----------cC----------------------------------------C------
Q 012397 195 ------------ADFALWKAA----------KA----------------------------------------G------ 206 (464)
Q Consensus 195 ------------~d~~~w~~~----------~~----------------------------------------g------ 206 (464)
+|+...+.. .. |
T Consensus 338 tgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~linS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y 417 (814)
T COG0495 338 TGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLINSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNY 417 (814)
T ss_pred ccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceEeccccccCcchhHHHHHHHHhHHHhcCCceEEec
Confidence 111100000 00 0
Q ss_pred -CCcc----cCCCCCCCCc--------------------------------------hhh-HHH----------------
Q 012397 207 -EPSW----DSPWGPGRPG--------------------------------------WHI-ECS---------------- 226 (464)
Q Consensus 207 -~~~~----~~~wg~~~P~--------------------------------------w~~-~~~---------------- 226 (464)
...| ...||.++|- |.. .|+
T Consensus 418 ~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~ 497 (814)
T COG0495 418 RLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFID 497 (814)
T ss_pred ccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEecCCCceeeehhhhhHhcc
Confidence 0011 1134544441 211 010
Q ss_pred --HHHH------------------hhcCCCeeEEEecccCccccchHHHHHHhhccC-------CCCccEEEEeeeeee-
Q 012397 227 --AMSA------------------HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ-------DSNVSYWMHNGHVTN- 278 (464)
Q Consensus 227 --~~~~------------------~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-------~~~~~~~~~~~~v~~- 278 (464)
.+.. .|| .|+|++++|+||+..|..+......++.. .|+.++ +.+|||+.
T Consensus 498 sswy~~r~~d~~~~~~~~~~~e~~~yW-~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L-~~qGmVl~~ 575 (814)
T COG0495 498 SSWYYLRFFDPIFLGELPFDREEFNYW-YPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKL-ITQGMVLGE 575 (814)
T ss_pred cccccHhhcChhcCccchhcHHHHhcc-cChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhh-hccceEEec
Confidence 0000 012 38999999999999999888888877752 355566 66999999
Q ss_pred CCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccC
Q 012397 279 NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTAR 357 (464)
Q Consensus 279 ~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~ 357 (464)
+|+|||||+||+|+|++++++||+|++|+|++.. ++.++++|+.+.+..+.+.+.++++.+.......... .+.
T Consensus 576 ~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~-----~~~ 650 (814)
T COG0495 576 EGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEE-----LTK 650 (814)
T ss_pred CCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhccccc-----ccc
Confidence 8999999999999999999999999999999987 8899999999999999999999999887655432111 111
Q ss_pred CC-hhHHHHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhh
Q 012397 358 IN-PAAEDCINKLRDEFHARMSDD-LNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 435 (464)
Q Consensus 358 ~d-~~l~~~l~~~~~~v~~~~~~~-~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lL 435 (464)
.+ ..+...++++++.+.+.+ +. +.++.+++. +|+|.+.+.+|...... .+ ..+..+++.++.+|
T Consensus 651 ~~~~~~~~~~h~~~~~v~~~~-e~~~~~nt~i~~-~m~l~N~l~~~~~~~~~--------~~----~~l~~~l~~~v~lL 716 (814)
T COG0495 651 EQGKEDRWLLHRTIKKVTEDF-EARQTFNTAIAA-LMELLNALRKYLRRTEG--------DR----KVLREALETWVRLL 716 (814)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHhcccc--------hH----HHHHHHHHHHHHHh
Confidence 12 455566677777788888 55 778889999 99999999998765432 01 56777899999999
Q ss_pred c-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 436 G-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 436 g-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
. |+|+ +||++|+.|+---.+....||
T Consensus 717 aP~aPH-~aEElW~~lg~~~~v~~~~wP 743 (814)
T COG0495 717 APFAPH-IAEELWEELGNEGFVSNAPWP 743 (814)
T ss_pred cccccH-HHHHHHHHhcCCCceeeCCCC
Confidence 9 9999 999999999842245555555
|
|
| >TIGR00456 argS arginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=358.21 Aligned_cols=367 Identities=16% Similarity=0.112 Sum_probs=274.9
Q ss_pred ceeecccCC--CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHH---HH-----
Q 012397 28 QKELFTPIV--RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRA---ND----- 97 (464)
Q Consensus 28 ~~~~~~~~~--~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a---~~----- 97 (464)
+...|.+.. ++++.|+.|||||+|++||||+|++++||+|+|++++.|++|...++++|+|..+-.-+ .+
T Consensus 100 ~~~~~g~~~~~~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~ 179 (566)
T TIGR00456 100 QKEDYGSKKLKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEK 179 (566)
T ss_pred cccccCCCCCCCCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCcc
Confidence 334454333 35899999999999999999999999999999999999999999999999986442111 00
Q ss_pred -----------------------------------------cCCC-----hHHHHHHHHHHHHHHHHhcCCCCCCCCC--
Q 012397 98 -----------------------------------------LGEN-----PLSLSNRYCQEYLVDMADLQCLPPTYQP-- 129 (464)
Q Consensus 98 -----------------------------------------~g~~-----~~~~~~~~~~~~~~~l~~lgi~~~~~~~-- 129 (464)
.|.+ ++..++...+.|.++|++|||.+ |.+.
T Consensus 180 ~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~f-D~~~~E 258 (566)
T TIGR00456 180 LNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHF-DSFVWE 258 (566)
T ss_pred ccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeeecc
Confidence 0111 35667778888999999999986 5554
Q ss_pred CcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCc
Q 012397 130 RVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 209 (464)
Q Consensus 130 r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~ 209 (464)
..+.+...+.+++++|.++|++|+. +..|.+... +|. ++.|..+-| ++|..+
T Consensus 259 ~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~---~~d----------------------~~~~~vl~k--sDGt~~ 310 (566)
T TIGR00456 259 GESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTL---FGD----------------------KDKDRVLQK--SDGTYL 310 (566)
T ss_pred ccccccccHHHHHHHHHHCCCEEEc-CCEEEEccc---ccC----------------------CCCCeEEEE--CCCCce
Confidence 3334455688999999999999977 777775432 110 001222322 355544
Q ss_pred ccCCCCCCCCchhhHHHHHHHhh-cCCCeeEEEecccCccccchH---HHHHHhhccCCCCccEEEEeeeeeeCCccccc
Q 012397 210 WDSPWGPGRPGWHIECSAMSAHY-LSSKFDIHGGGIDLIFPHHEN---EIAQSCAACQDSNVSYWMHNGHVTNNNEKMSK 285 (464)
Q Consensus 210 ~~~~wg~~~P~w~~~~~~~~~~~-~~~~~~i~~~G~D~~~~h~~~---~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSk 285 (464)
|... .++. ...++ -+.+..|++.|.| |+.. ..+.+++++.+++.++ .|++|.+++|.||||
T Consensus 311 Y~t~--------DiA~--~~~k~~~~~d~iI~V~g~~----q~~h~~~v~~~l~~lG~~~~~~l-~h~~~~~V~~~kmSk 375 (566)
T TIGR00456 311 YLTR--------DIAY--HLDKLERGFDKMIYVWGSD----HHLHIAQFFAILEKLGFYKKKEL-IHLNFGMVPLGSMKT 375 (566)
T ss_pred echh--------hHHH--HHHHHhcCCCEEEEEecCc----HHHHHHHHHHHHHHcCCCCCCce-EEEEEEEEECCCCCc
Confidence 3220 1111 11111 1445778999999 5432 2344555665555555 678999999999999
Q ss_pred ccCCccCHH-----------------------HHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHH-HHHHHHHHHHH
Q 012397 286 SLGNFFTIR-----------------------QITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD-AVFYIYQTLQD 341 (464)
Q Consensus 286 s~gn~i~~~-----------------------dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~-~l~~l~~~~~~ 341 (464)
|+||+|++. ++++.+|.|++||++++..+.++++||++.+.+..+ ...+++|+++|
T Consensus 376 r~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR 455 (566)
T TIGR00456 376 RRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHAR 455 (566)
T ss_pred cCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHH
Confidence 999999998 677778999999999999889999999999877654 45699999999
Q ss_pred HHHhcCccccCCC---------ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCch-
Q 012397 342 CEVALSPFQEHGK---------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK- 411 (464)
Q Consensus 342 ~~~~l~~~~~~~~---------~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~- 411 (464)
++++++++..... .++.++.|+..+.++++.+.+++ ++++++.++.. ++++++.+|+||+.|++....
T Consensus 456 ~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~-~~~~p~~~~~~-l~~La~~~N~yy~~~~Vl~~~~ 533 (566)
T TIGR00456 456 ICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAA-EELEPHVLTNY-LYELASLFSSFYKACPVLDAEN 533 (566)
T ss_pred HHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHH-HHHHHHHHHHHHhcCccCCCCC
Confidence 9999987742111 13346789999999999999999 99999888888 999999999999999887642
Q ss_pred -hhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 412 -QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 412 -~~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
....+|+.++.++..+|++++.||||.|+
T Consensus 534 ~~~~~~RL~L~~a~~~vl~~gL~lLGI~~~ 563 (566)
T TIGR00456 534 ENLAAARLALLKATRQTLKNGLQLLGIEPP 563 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 23579999999999999999999999886
|
This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. |
| >PLN02286 arginine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=350.21 Aligned_cols=357 Identities=11% Similarity=0.045 Sum_probs=264.4
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHH---HH-cC-------CC----
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRA---ND-LG-------EN---- 101 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a---~~-~g-------~~---- 101 (464)
+++|.|..+||||+|||||||+|++++||+|+|+|+++|++|...++++|+|..+-.-+ .+ .| .+
T Consensus 116 ~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 195 (576)
T PLN02286 116 VKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDL 195 (576)
T ss_pred CceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHH
Confidence 47899999999999999999999999999999999999999999999999997542211 01 01 00
Q ss_pred --------------------------------------hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHH
Q 012397 102 --------------------------------------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMIT 143 (464)
Q Consensus 102 --------------------------------------~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~ 143 (464)
|+.+++.....|.+.+++|||.+ +. ...|.+.+.+.++++
T Consensus 196 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~f-d~-~ges~y~~~~~~vi~ 273 (576)
T PLN02286 196 QEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVEL-EE-KGESFYNPYIPGVIE 273 (576)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCee-ee-cCchhhhhhHHHHHH
Confidence 23555666677888999999996 44 355567777899999
Q ss_pred HHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhh
Q 012397 144 QIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHI 223 (464)
Q Consensus 144 ~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~ 223 (464)
+|.++|++|+.++..|.+... .+ .+..+- .++|..++... .+
T Consensus 274 ~L~~~g~~~e~dGa~~v~l~~---~~-------------------------~~~vl~--ksDGt~tY~t~--------DI 315 (576)
T PLN02286 274 ELESKGLVVESDGARVIFVEG---FD-------------------------IPLIVV--KSDGGFNYAST--------DL 315 (576)
T ss_pred HHHHCCCEEeeCCceEeeccC---CC-------------------------CceEEE--ECCCchhhHHH--------HH
Confidence 999999999888877764311 00 011121 12443322110 11
Q ss_pred HHHHHHHhhcCCCeeEEEecccCccccchH---HHHHHhhccCC-C--CccE-EEEeeeee-eCCcccccccCCccCHHH
Q 012397 224 ECSAMSAHYLSSKFDIHGGGIDLIFPHHEN---EIAQSCAACQD-S--NVSY-WMHNGHVT-NNNEKMSKSLGNFFTIRQ 295 (464)
Q Consensus 224 ~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~---~~a~~~a~~~~-~--~~~~-~~~~~~v~-~~G~KmSks~gn~i~~~d 295 (464)
++.....+.++.+..|++.|.| |+.. ..+.+.+++.. . ..++ .+..|+|+ .+|+|||||+|++|+++|
T Consensus 316 A~~~~k~~~~~~d~~IyVvg~~----q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~d 391 (576)
T PLN02286 316 AALWYRLNEEKAEWIIYVTDVG----QQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVD 391 (576)
T ss_pred HHHHHHHhccCCCEEEEEEeCc----HHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHH
Confidence 1111111123445678889999 5432 23444445532 2 1122 23357886 488899999999999999
Q ss_pred HHHh-----------------------------cCchhHHHHHhhcCCCCccCCCHHHHHHHHHH-HHHHHHHHHHHHHh
Q 012397 296 ITER-----------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSASDA-VFYIYQTLQDCEVA 345 (464)
Q Consensus 296 ll~~-----------------------------~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~-l~~l~~~~~~~~~~ 345 (464)
++++ +|.+|+||++++.++.++++|||+.+.+..++ -.|+||+++|++|+
T Consensus 392 lldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SI 471 (576)
T PLN02286 392 LLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSI 471 (576)
T ss_pred HHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHH
Confidence 9993 56899999999999999999999998877643 33999999999999
Q ss_pred cCccccCC----------CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhh
Q 012397 346 LSPFQEHG----------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL 415 (464)
Q Consensus 346 l~~~~~~~----------~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~ 415 (464)
++++.... ..++.++.|+..|.++++.+.++. +++. |+.|+.||+++++.||+||+.|++...... .
T Consensus 472 lrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~-~~~~-P~~l~~Yl~~LA~~F~~fY~~~~Vl~~~~~-~ 548 (576)
T PLN02286 472 IRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEAC-TDLL-PNRLCEYLYNLSEKFTKFYSNCKVNGSEEE-T 548 (576)
T ss_pred HHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhcC-chHHHHHHHHHHHHHHHHHhcCccCCCCch-h
Confidence 98874210 114566889999999999999999 7776 777788899999999999999988753333 7
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 416 SLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 416 ~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
+|+.++.++..+|++++.||||.|+
T Consensus 549 aRL~L~~a~~~vL~~gL~LLGI~~~ 573 (576)
T PLN02286 549 SRLLLCEATAIVMRKCFHLLGITPL 573 (576)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 8999999999999999999999887
|
|
| >cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=340.17 Aligned_cols=277 Identities=21% Similarity=0.218 Sum_probs=200.5
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc-CCCh---------------
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL-GENP--------------- 102 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~-g~~~--------------- 102 (464)
+..+..++|+|||++||||+|+.+++|+++|++|++|++|.+++|+|+||.+|+.++.+. |.++
T Consensus 2 ~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~ 81 (338)
T cd00818 2 EFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAK 81 (338)
T ss_pred CeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHH
Confidence 456777889999999999999999999999999999999999999999999999998875 7654
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--CCCC-CCCCC--
Q 012397 103 -LSLSNRYCQEYLVDMADLQCLPP-T--YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--SPNY-GRLSG-- 173 (464)
Q Consensus 103 -~~~~~~~~~~~~~~l~~lgi~~~-~--~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--~~~~-g~l~~-- 173 (464)
++++++|.+.|.+++++|||+.+ + ..+..++|.+.++++|.+|+++|++|++++.++|.+.- +.++ =.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~ 161 (338)
T cd00818 82 CREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPWPLIYRATPQWFIRVTKIK 161 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeeeEEEEEecCeEEEEcHHHH
Confidence 79999999999999999999642 2 23344489999999999999999999999999993210 0000 00110
Q ss_pred ccccccccCCCcccCCcccCcccccccc-cccCCCCcccCCCCCCCCchhhH--------------------H-HHHHH-
Q 012397 174 QRLENNRAGERVAVDSRKRNPADFALWK-AAKAGEPSWDSPWGPGRPGWHIE--------------------C-SAMSA- 230 (464)
Q Consensus 174 ~~~~~~~~g~~~~~~~~k~~~~d~~~w~-~~~~g~~~~~~~wg~~~P~w~~~--------------------~-~~~~~- 230 (464)
..+.+..+...+..+..+. .+.-|. ...+-.++|+..||++.|.|.++ . ..++.
T Consensus 162 ~~l~~~~~~~~~~P~~~~~---~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~ 238 (338)
T cd00818 162 DRLLEANDKVNWIPEWVKN---RFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQL 238 (338)
T ss_pred HHHHHHHhcCcEECHHHHH---HHHHHHhcchhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHc
Confidence 0011111110000000000 011121 12344567888999999865322 1 01111
Q ss_pred hh------c--CCCeeEEEecccCcc--ccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHh
Q 012397 231 HY------L--SSKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER 299 (464)
Q Consensus 231 ~~------~--~~~~~i~~~G~D~~~--~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~ 299 (464)
.+ + .++.++++.|+|+++ +|...+++.. +.+..+|.++++ ||+++. +|+|||||+||+|++.|+++.
T Consensus 239 ~~~~~~~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~-hg~~~~~~g~KmSKS~gn~i~~~~~~~~ 316 (338)
T cd00818 239 HYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIV-HGFVLDEDGRKMSKSLGNYVDPQEVVDK 316 (338)
T ss_pred CCCCcchhhhccCCCeEEeecchHHhHHHHHHHHHHHH-hcCCCccceEEE-EeeEECCCCCCCCCCCCCcCCHHHHHHH
Confidence 00 1 147899999999997 7777777654 334567788877 588876 899999999999999999999
Q ss_pred cCchhHHHHHhhc-CCCCccCC
Q 012397 300 YHPLALRHFLISA-HYRSPLNY 320 (464)
Q Consensus 300 ~~~dalR~~ll~~-~~~~~~~f 320 (464)
+|+|++|||+++. +.++|++|
T Consensus 317 ~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 317 YGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred cCcHHHHHHHHhCCCccCCCCC
Confidence 9999999999987 78898876
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=333.02 Aligned_cols=407 Identities=16% Similarity=0.172 Sum_probs=293.7
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHH----HHHHHcC-CC----------
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKII----RRANDLG-EN---------- 101 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~----~~a~~~g-~~---------- 101 (464)
.+...|++++||++|.||||||-+..+-|+++|+.|+.|+.|.++.|+|..|-.++ ....+.| ++
T Consensus 74 ~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~ 153 (995)
T KOG0432|consen 74 GGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFL 153 (995)
T ss_pred CCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHH
Confidence 46778999999999999999999999999999999999999999999999985332 2222222 32
Q ss_pred --hHHHHHHHHHHHHHHHHhcCCCCC---CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------
Q 012397 102 --PLSLSNRYCQEYLVDMADLQCLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------ 164 (464)
Q Consensus 102 --~~~~~~~~~~~~~~~l~~lgi~~~---~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------ 164 (464)
.++|-++|.+.|.+.+++||.+.+ ..|+.....-+.+.+.|-+|.+.|+||+..+-+.||+.-
T Consensus 154 ~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ 233 (995)
T KOG0432|consen 154 KEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESV 233 (995)
T ss_pred HHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecce
Confidence 588999999999999999999852 123433355677999999999999999999888888651
Q ss_pred ---------CC------------------------------------------------CCCCC---------CCc----
Q 012397 165 ---------SP------------------------------------------------NYGRL---------SGQ---- 174 (464)
Q Consensus 165 ---------~~------------------------------------------------~~g~l---------~~~---- 174 (464)
-| +|..+ .++
T Consensus 234 ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~lPi 313 (995)
T KOG0432|consen 234 EIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKLPI 313 (995)
T ss_pred ecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecCCCCCccce
Confidence 01 11000 000
Q ss_pred ---------------------cccccccCCCcccC-----------------------------------------Cccc
Q 012397 175 ---------------------RLENNRAGERVAVD-----------------------------------------SRKR 192 (464)
Q Consensus 175 ---------------------~~~~~~~g~~~~~~-----------------------------------------~~k~ 192 (464)
+..+++-|.|..++ ..+.
T Consensus 314 I~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~ 393 (995)
T KOG0432|consen 314 ICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKEN 393 (995)
T ss_pred eecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhccCC
Confidence 00000000000000 0000
Q ss_pred Cc---------ccccc------c----------------------------------cc-ccCCCCcccCCCCCCCCchh
Q 012397 193 NP---------ADFAL------W----------------------------------KA-AKAGEPSWDSPWGPGRPGWH 222 (464)
Q Consensus 193 ~~---------~d~~~------w----------------------------------~~-~~~g~~~~~~~wg~~~P~w~ 222 (464)
+| .|.+- | .. ..+..++|+.+||..+|+|+
T Consensus 394 h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~ 473 (995)
T KOG0432|consen 394 HPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYF 473 (995)
T ss_pred CceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceee
Confidence 11 12210 1 00 01223566789999999876
Q ss_pred hHH-----------------HH---HHHh----------------------------hcCC-----------CeeEEEec
Q 012397 223 IEC-----------------SA---MSAH----------------------------YLSS-----------KFDIHGGG 243 (464)
Q Consensus 223 ~~~-----------------~~---~~~~----------------------------~~~~-----------~~~i~~~G 243 (464)
+.. .+ ...+ .+|| |.++.=.|
T Consensus 474 v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~sllETG 553 (995)
T KOG0432|consen 474 VNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETG 553 (995)
T ss_pred eecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCccccccHHhcCCchhhhcC
Confidence 410 00 0000 1233 34456669
Q ss_pred ccCccccchHHHHHHhhcc----C-CCCccEEEEeeeeee-CCcccccccCCccCHHHHHH-------------------
Q 012397 244 IDLIFPHHENEIAQSCAAC----Q-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE------------------- 298 (464)
Q Consensus 244 ~D~~~~h~~~~~a~~~a~~----~-~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~------------------- 298 (464)
.|++|| |+|++.+++ + -||.++++ |++|.+ .|+|||||+||||+|.|+++
T Consensus 554 ~DILfF----WVaRMvmLg~kLtG~lPF~~V~L-H~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~ 628 (995)
T KOG0432|consen 554 HDILFF----WVARMVMLGLKLTGELPFKEVLL-HGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPR 628 (995)
T ss_pred chHHHH----HHHHHHHhhhhhcCCCCchheee-chhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHH
Confidence 998777 666666554 3 38888877 589998 99999999999999999997
Q ss_pred -----------hc-------CchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcc-ccCC-----
Q 012397 299 -----------RY-------HPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPF-QEHG----- 353 (464)
Q Consensus 299 -----------~~-------~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~-~~~~----- 353 (464)
.| |.|||||.|++. .-++|+++|...+...+...++|||+.+++...+.+. ....
T Consensus 629 Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~ 708 (995)
T KOG0432|consen 629 EVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLS 708 (995)
T ss_pred HHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCcccccC
Confidence 23 999999999986 7789999999999999999999999999988776542 1111
Q ss_pred -CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--HHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHH
Q 012397 354 -KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKE 430 (464)
Q Consensus 354 -~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~ 430 (464)
.....|+|++.+|+...+++.+.+ +.+++..|... +..|. ..+.-|++..+|.........+....++++.++.+
T Consensus 709 ~~~~~~d~WIlsrL~~av~~~~~~~-~~~~f~~at~a-~~~Fwl~~lCDVYlE~~Kp~l~~~~~~~~~~a~~vL~~~ld~ 786 (995)
T KOG0432|consen 709 GNESLVDEWILSRLAEAVEEVNESL-EARNFHLATSA-LYAFWLYDLCDVYLEATKPLLWGDSEALAYEARRVLYRCLDN 786 (995)
T ss_pred CCcchhHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHH-HHHHHHHHHHHHHHHHhhHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 111278999999999999999999 99999999999 99987 36799999998832122233455567889999999
Q ss_pred HHHhhc-cCCCccHHHHHHHhh
Q 012397 431 VLRILG-LLPPGAYSEVKTAFL 451 (464)
Q Consensus 431 ~l~lLg-i~p~~~~e~i~~~l~ 451 (464)
+|++|+ |||+ +||++||+|.
T Consensus 787 gLrll~PfMPF-vtEel~qrlP 807 (995)
T KOG0432|consen 787 GLRLLHPFMPF-ITEELWQRLP 807 (995)
T ss_pred HHHHhcCcccc-cHHHHHHhcc
Confidence 999999 9998 9999999984
|
|
| >PLN02959 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=350.17 Aligned_cols=214 Identities=21% Similarity=0.134 Sum_probs=161.2
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~- 312 (464)
.|+|+++.|+|++++|..+......++.+ .|+++.++.||||+.+|+|||||+||+|+|.|++++||+|++|||+++.
T Consensus 670 yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~ 749 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAG 749 (1084)
T ss_pred CCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcC
Confidence 37999999999999999777776777665 4666645668999999999999999999999999999999999999987
Q ss_pred CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc---cccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHH
Q 012397 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSP---FQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 389 (464)
Q Consensus 313 ~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~---~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~ 389 (464)
+..+|.+|+++.+.++...+.++... +...+.. ..........|+|++.+++++++++.++| ++++++.|+..
T Consensus 750 ~~~~D~nF~~k~~n~~~~~l~n~~~~---~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~a~-e~y~f~~A~~~ 825 (1084)
T PLN02959 750 DGVDDANFVFETANAAILRLTKEIAW---MEEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNY-EAMMFREALKS 825 (1084)
T ss_pred CccCCCCccHHHHHHHHHHHHHHHHH---HHHhhhhhcccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH
Confidence 77899999998877665555443322 2222211 11111134678999999999999999999 99999999998
Q ss_pred HHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHh-hhhHhHhcCCCC
Q 012397 390 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAF-LVLLHVFFDDSP 462 (464)
Q Consensus 390 yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l-~~~~~~~~~~~~ 462 (464)
-.++|.....+|...+. .. .....++..+|..++.+|+ |+|+ +||+||+.| +..-++++..||
T Consensus 826 ~~Yel~~~k~~yr~~~~----~~-----~~~~~~L~~vl~~~l~LLaP~~Pf-iaEEiW~~l~~~~~sI~~~~wP 890 (1084)
T PLN02959 826 GFYDLQAARDEYRLSCG----SG-----GMNRDLVWRFMDVQTRLITPICPH-YAEHVWREILKKEGFAVTAGWP 890 (1084)
T ss_pred HHHHHHHhHHHHhhccc----cc-----hHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhccCCCCeEEecCCC
Confidence 23334333333321111 00 0224578889999999999 9999 999999999 444467888887
|
|
| >KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=289.85 Aligned_cols=402 Identities=18% Similarity=0.182 Sum_probs=280.8
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++..|..-=|.|+|.|||||.|-++|+|++||+.|++|++|.+..|+|-+|.+.+.+|.+.|+.|.+|+..+.+.+++.+
T Consensus 57 k~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql 136 (876)
T KOG0435|consen 57 KKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQL 136 (876)
T ss_pred CCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHH
Confidence 44455555699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCcc----hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCC--------------CCCC---------
Q 012397 118 ADLQCLPPTYQPRVS----DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP--------------NYGR--------- 170 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s----~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~--------------~~g~--------- 170 (464)
+++|+.+ |....-| +|.+..|.+|.+|.++|++|+.+-.+.||+-.|. +.|.
T Consensus 137 ~~lg~~F-DWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQ 215 (876)
T KOG0435|consen 137 KSLGISF-DWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQ 215 (876)
T ss_pred HHcCccc-ccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHH
Confidence 9999985 4433222 8999999999999999999999988988876321 0110
Q ss_pred ---------------------------------------------CCC----ccc-------ccc---------------
Q 012397 171 ---------------------------------------------LSG----QRL-------ENN--------------- 179 (464)
Q Consensus 171 ---------------------------------------------l~~----~~~-------~~~--------------- 179 (464)
+.+ +.+ +.+
T Consensus 216 WfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~ 295 (876)
T KOG0435|consen 216 WFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLL 295 (876)
T ss_pred HHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceEEEEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhh
Confidence 000 000 000
Q ss_pred ----------c-------------------cCCCccc-------CCc---------ccCcccccccccc-----------
Q 012397 180 ----------R-------------------AGERVAV-------DSR---------KRNPADFALWKAA----------- 203 (464)
Q Consensus 180 ----------~-------------------~g~~~~~-------~~~---------k~~~~d~~~w~~~----------- 203 (464)
. .|..+.+ .++ -...+|+.+|.+.
T Consensus 296 ~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~ 375 (876)
T KOG0435|consen 296 DKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVI 375 (876)
T ss_pred hhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEEEEeee
Confidence 0 0000000 000 0011344444330
Q ss_pred --------------------------------------------cCCCCcccCCCCCCCCchhh----------------
Q 012397 204 --------------------------------------------KAGEPSWDSPWGPGRPGWHI---------------- 223 (464)
Q Consensus 204 --------------------------------------------~~g~~~~~~~wg~~~P~w~~---------------- 223 (464)
++..++|+..||.++|-=|.
T Consensus 376 f~~~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~ 455 (876)
T KOG0435|consen 376 FTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVSYKLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVT 455 (876)
T ss_pred ecchhhhhccccccchhHHHHHHHHHHHHHHhcCCCcceecchhhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcc
Confidence 00112445579988873110
Q ss_pred -----------------------HHH-----H------H------HHhhc---C----------------CCeeEEEecc
Q 012397 224 -----------------------ECS-----A------M------SAHYL---S----------------SKFDIHGGGI 244 (464)
Q Consensus 224 -----------------------~~~-----~------~------~~~~~---~----------------~~~~i~~~G~ 244 (464)
.|. + | ++.|| + -|+|++++|+
T Consensus 456 LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVDvYIGG~ 535 (876)
T KOG0435|consen 456 LPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGGK 535 (876)
T ss_pred cccccccCCCCCcccchhhheeccCccCCCcccccccccchhhccceeeEeecCCCCcccccchhhhhccCceeEEeccH
Confidence 000 0 0 01111 1 2899999999
Q ss_pred cCccccchHHHHHHhhcc-------CCCCccEEEEee------------------------------eeee-CC------
Q 012397 245 DLIFPHHENEIAQSCAAC-------QDSNVSYWMHNG------------------------------HVTN-NN------ 280 (464)
Q Consensus 245 D~~~~h~~~~~a~~~a~~-------~~~~~~~~~~~~------------------------------~v~~-~G------ 280 (464)
.|...|..+-.....-+. ..||..+ +.+| +++- ++
T Consensus 536 EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~L-i~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t 614 (876)
T KOG0435|consen 536 EHAVLHLLYARFIAKFLKDIGVVSTAEPFTKL-ITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVT 614 (876)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHH-HhhhcccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeee
Confidence 988877765433332221 1233222 2122 1111 22
Q ss_pred -cccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHh--cCccccCCCc-
Q 012397 281 -EKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVA--LSPFQEHGKT- 355 (464)
Q Consensus 281 -~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~--l~~~~~~~~~- 355 (464)
+|||||++|+|+|.|++.+||+|++|++++-. ++.++++|+.+.+....+.+.++|.....+.+. .++..+....
T Consensus 615 ~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~t 694 (876)
T KOG0435|consen 615 YEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLT 694 (876)
T ss_pred HHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 49999999999999999999999999999986 999999999999999999999999987766544 2222211111
Q ss_pred ---cCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHH
Q 012397 356 ---ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVL 432 (464)
Q Consensus 356 ---~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l 432 (464)
....+.+.+..+.++..+++.+...+.++.||.. ++.|.+.+.+-+.....|.. .....|..+.
T Consensus 695 d~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~-~m~ltN~l~~a~k~~~~h~~------------~~~~al~~lv 761 (876)
T KOG0435|consen 695 DGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISD-MMGLTNALKKALKIVLVHSP------------EFERALEALV 761 (876)
T ss_pred cccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhcCh------------HHHHHHHHHH
Confidence 2234688999999999999999667779999999 99999988777766655542 3334566677
Q ss_pred Hhhc-cCCCccHHHHHHHhhhhHh
Q 012397 433 RILG-LLPPGAYSEVKTAFLVLLH 455 (464)
Q Consensus 433 ~lLg-i~p~~~~e~i~~~l~~~~~ 455 (464)
.+|. +.|+ .|+|+|..|+.-.+
T Consensus 762 ~mlaP~aPh-~asE~Ws~l~~~~~ 784 (876)
T KOG0435|consen 762 IMLAPFAPH-VASELWSALANDLS 784 (876)
T ss_pred HHHhccCch-hHHHHHHHHhcccc
Confidence 7888 8899 99999999984443
|
|
| >cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=286.40 Aligned_cols=273 Identities=15% Similarity=0.144 Sum_probs=184.1
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCcccc------------------HHHHHHHHHcCC
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD------------------DKIIRRANDLGE 100 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g------------------~~i~~~a~~~g~ 100 (464)
...++.||++|||.+||||+|+++++|+++|++|++|++|.+++++|||| .++...+...|.
T Consensus 19 ~~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~ 98 (353)
T cd00674 19 EKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC 98 (353)
T ss_pred CeEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence 44677788999999999999999999999999999999999999999994 444444555565
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhH--HHHHHHHHHHHHCCceEee--------cCcEEEc-CCCCCCCC
Q 012397 101 NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHM--EQIKDMITQIINNDCAYVV--------EGDVFFA-VEKSPNYG 169 (464)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~--~~~~~~~~~L~~~G~~y~~--------~~~~~~~-~~~~~~~g 169 (464)
.+ +++++|...|.+.++.|||++ +.+.++..+. ...+.++..|.+++.|.+. ..+.|+. ..-|++||
T Consensus 99 ~~-~~~d~~~~~f~~~l~~lgi~~-d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg 176 (353)
T cd00674 99 CE-SYAEHFERPFEESLEKLGIEV-EFISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCG 176 (353)
T ss_pred CH-HHHHHHHHHHHHHHHHcCCee-eeeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcC
Confidence 55 999999999999999999995 6554444333 4577777777777775322 1233433 23599999
Q ss_pred CCCCccccccc-cCCCcccCCcccCcccccccccc--cCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccC
Q 012397 170 RLSGQRLENNR-AGERVAVDSRKRNPADFALWKAA--KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDL 246 (464)
Q Consensus 170 ~l~~~~~~~~~-~g~~~~~~~~k~~~~d~~~w~~~--~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~ 246 (464)
+++ ..+.+.. +..++...+...+. .+... ..|.. +|-..||. .+.++ .+|+.+.|+||
T Consensus 177 ~~~-~~v~~~d~~~~~v~y~c~cG~~----g~~~~~~g~~KL----~Wr~dW~~--------rW~~l--~Vd~E~~GkDh 237 (353)
T cd00674 177 KDT-TTVEAYDAKAGTVTYKCECGHE----ETVDIRTGRGKL----TWRVDWPM--------RWAIL--GVDFEPFGKDH 237 (353)
T ss_pred cce-eEEEEEeCCCCeEEEEcCCCCE----EEEeecCCCccc----CCCCCchh--------hhhhc--CCCEEeeCccc
Confidence 775 3333332 12223332211111 11111 11222 34444332 12334 58999999996
Q ss_pred ccccchH--HHHHHh-hccCCCCccEEEEeeeeeeCCc-ccccccCCccCHHHHHHhcCchhHHHHHhhcC-CCCccCCC
Q 012397 247 IFPHHEN--EIAQSC-AACQDSNVSYWMHNGHVTNNNE-KMSKSLGNFFTIRQITERYHPLALRHFLISAH-YRSPLNYS 321 (464)
Q Consensus 247 ~~~h~~~--~~a~~~-a~~~~~~~~~~~~~~~v~~~G~-KmSks~gn~i~~~dll~~~~~dalR~~ll~~~-~~~~~~f~ 321 (464)
......+ ...++. +++.++|.. +.+||++++|+ |||||+||+|+|.|+++.+++|++||++++.+ ..++++|+
T Consensus 238 ~~~ggs~~~~~~i~~~ilg~~~P~~--~~ye~V~l~gg~KMSKSkGnvI~~~dll~~~~~dalR~~~l~~~~~~~~i~Fd 315 (353)
T cd00674 238 ASAGGSYDTGKEIAREIFGGEPPVP--VMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKHIGFD 315 (353)
T ss_pred cccccHHHHHHHHHHHHhCCCCCeE--EEeeeEEeCCCCccCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCCCcC
Confidence 5331111 122233 455555543 44699999766 99999999999999999999999999999986 88999999
Q ss_pred HHHHHHHHHHHHHH
Q 012397 322 VLQLDSASDAVFYI 335 (464)
Q Consensus 322 ~~~~~~~~~~l~~l 335 (464)
++ +......+.++
T Consensus 316 ~~-~~~~~dey~r~ 328 (353)
T cd00674 316 LD-ILRLYDEYDRL 328 (353)
T ss_pred hh-HHHHHHHHHHH
Confidence 85 33344443333
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. |
| >KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=282.77 Aligned_cols=212 Identities=17% Similarity=0.190 Sum_probs=172.7
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCC-CCccEEEEeeeeee-CCcccccccCCccCHHHHHHh------cCchhHHH
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER------YHPLALRH 307 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~------~~~dalR~ 307 (464)
.+|++..|.|+.+-++-.......|...+ |+..+++ |||.+. +|.|||||.||||+|+.+++. ||+|++||
T Consensus 566 ~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~viv-HGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~ 644 (937)
T KOG0433|consen 566 VADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIV-HGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRF 644 (937)
T ss_pred ceeeEEecchhcchHHHHHHHHHHHHhccCCchheee-eeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceee
Confidence 57899999994333322222233454444 6666655 699998 899999999999999999998 99999999
Q ss_pred HHhhcCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCC------ccCCChhHHHHHHHHHHHHHHHHhccc
Q 012397 308 FLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK------TARINPAAEDCINKLRDEFHARMSDDL 381 (464)
Q Consensus 308 ~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~------~~~~d~~l~~~l~~~~~~v~~~~~~~~ 381 (464)
|++.+....++...+..+.++...+.++.++++++.+.++++..... ..-.|+.++..|.++.+++++.+ ++|
T Consensus 645 WVA~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y-~~Y 723 (937)
T KOG0433|consen 645 WVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELY-NDY 723 (937)
T ss_pred eeecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHH-Hhc
Confidence 99988889999999999999999999999999999999988865421 13468999999999999999999 999
Q ss_pred ChHHHHHHHHHHHHH-HH-HHHhhhhcc--cCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhh
Q 012397 382 NTSHILTGAFQDALK-FI-NSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFL 451 (464)
Q Consensus 382 ~~~~al~~yl~~l~~-~~-n~~~~~~~~--~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~ 451 (464)
++.+++.. |..|.. .+ |-|++..+. ..+...+.+|+....++.+.+..+..++. |+|+ .+|++||.|.
T Consensus 724 ~f~kVv~~-lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~-LaeEvwq~lP 796 (937)
T KOG0433|consen 724 KFRKVVND-LQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPH-LAEEVWQHLP 796 (937)
T ss_pred cHHHHHHH-HHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHH-HHHHHHHhCC
Confidence 99999999 988875 44 445555443 33223457788888888999999999999 9999 9999999997
|
|
| >PRK00750 lysK lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=287.25 Aligned_cols=279 Identities=17% Similarity=0.150 Sum_probs=186.1
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccH--HH-------HHHHHHcCCC--------
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD--KI-------IRRANDLGEN-------- 101 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~--~i-------~~~a~~~g~~-------- 101 (464)
...++.||++|||.+||||+|+++++|+++|++|.+|++|.+++++||||. || ...++..|++
T Consensus 23 ~~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~ 102 (510)
T PRK00750 23 PPVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPF 102 (510)
T ss_pred CcEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCC
Confidence 347888999999999999999999999999999999999999999999984 33 2344455665
Q ss_pred --hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhH--HHHHHHHHHHHHCCceEe------e--cCcEEEcC-CCCCCC
Q 012397 102 --PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHM--EQIKDMITQIINNDCAYV------V--EGDVFFAV-EKSPNY 168 (464)
Q Consensus 102 --~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~--~~~~~~~~~L~~~G~~y~------~--~~~~~~~~-~~~~~~ 168 (464)
+++++++|...|.+.++.+||++ +.+.++..+. ...+.+...|.+++.|.+ + ..+.|+.. .-|++|
T Consensus 103 G~~~~~~~~~~~~~~~~~~~~gi~~-d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~c 181 (510)
T PRK00750 103 GCHESYAEHFNAPLREFLDRFGIEY-EFISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSPFLPICPKC 181 (510)
T ss_pred CCchHHHHHHHHHHHHHHHHcCCce-EEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCC
Confidence 79999999999999999999985 6444433222 223333333333333321 1 12333332 359999
Q ss_pred CCCCCcccccccc-CCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCc
Q 012397 169 GRLSGQRLENNRA-GERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 247 (464)
Q Consensus 169 g~l~~~~~~~~~~-g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~ 247 (464)
|++....+.+... ..+|.+.+...+. .......|. -..+|-..|| |.|.++ .+|+.+.|+||.
T Consensus 182 g~~~~~~~~~~d~~~~~v~y~~~cG~~----~~~~~~~g~--~KL~Wr~dW~--------~rW~~l--~Vd~e~~GkDh~ 245 (510)
T PRK00750 182 GKVLTTPVISYDAEAGTVTYDCECGHE----GEVPVTGGH--GKLQWKVDWP--------MRWAAL--GVDFEPFGKDHA 245 (510)
T ss_pred CccceEEEEEEeCCCCEEEEEcCCCCE----EEEecCCCC--cccCCCCCcH--------HHHHHc--CCCEEeeCcccC
Confidence 9987654433321 1123332211111 111111111 0123333333 223345 489999999976
Q ss_pred c-ccchHHHHHHh-hccCCCCccEEEEeeeeeeC-CcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHH
Q 012397 248 F-PHHENEIAQSC-AACQDSNVSYWMHNGHVTNN-NEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVL 323 (464)
Q Consensus 248 ~-~h~~~~~a~~~-a~~~~~~~~~~~~~~~v~~~-G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~ 323 (464)
. .+. ....+.. +++.++|.. +++||++++ |+|||||+||+|++.|+++.+++|++|||++.. ++.++++|++
T Consensus 246 ~~s~~-~~~~i~~~ilg~~~P~~--~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~~~~~~~~f~~- 321 (510)
T PRK00750 246 SASYD-TSKKIAREILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKRLDFDV- 321 (510)
T ss_pred cchHH-HHHHHHHHHcCCCCCee--eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCCCCCCCCcccH-
Confidence 6 333 2233333 556555544 567999996 999999999999999999999999999888855 8899999998
Q ss_pred HHHHHHHHHHHHHHHH
Q 012397 324 QLDSASDAVFYIYQTL 339 (464)
Q Consensus 324 ~~~~~~~~l~~l~~~~ 339 (464)
+....+.+.++...+
T Consensus 322 -l~~~~dey~rl~~~~ 336 (510)
T PRK00750 322 -IPKLVDEYDRFERKY 336 (510)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 777777666665544
|
|
| >KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=270.46 Aligned_cols=224 Identities=15% Similarity=0.153 Sum_probs=172.9
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccCC-CCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
.|.|+...|-|+.+-+..-......+++++ |+.++ +.+|.|+. ||+|||||+.|+.+|..++++||+||+|+||+.+
T Consensus 553 fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNv-IvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInS 631 (1070)
T KOG0434|consen 553 FPADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNV-IVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINS 631 (1070)
T ss_pred CchHhhhhccccccchhhHHHHHHHHHcCCCcchhe-eEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecC
Confidence 477888889995544442223334455554 66777 55899998 9999999999999999999999999999999998
Q ss_pred CC--CCccCCCHHHHHHHHHHH-HHHHHHHHHHHHhcCccccC-----------CCccCCChhHHHHHHHHHHHHHHHHh
Q 012397 313 HY--RSPLNYSVLQLDSASDAV-FYIYQTLQDCEVALSPFQEH-----------GKTARINPAAEDCINKLRDEFHARMS 378 (464)
Q Consensus 313 ~~--~~~~~f~~~~~~~~~~~l-~~l~~~~~~~~~~l~~~~~~-----------~~~~~~d~~l~~~l~~~~~~v~~~~~ 378 (464)
|. ...+.|.++.+......+ --++|++++........... ...+.+|+|+++.+++++.-+++.|
T Consensus 632 PVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM- 710 (1070)
T KOG0434|consen 632 PVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEM- 710 (1070)
T ss_pred ccccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHH-
Confidence 53 688999999999887653 34556666554432222111 1225589999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHH-HHHhhhhcc-cCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHh
Q 012397 379 DDLNTSHILTGAFQDALKFI-NSSLNMLKK-KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLH 455 (464)
Q Consensus 379 ~~~~~~~al~~yl~~l~~~~-n~~~~~~~~-~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~ 455 (464)
+.|+...++.. |..|+..+ |+|+..++. .+......+-..++.++.++|..+.++|+ |+|+ .+|.|||.|...+.
T Consensus 711 ~~YrLytVvp~-llkfiD~LTNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF-~tE~iyq~Lk~~~~ 788 (1070)
T KOG0434|consen 711 DQYRLYTVVPR-LLKFIDELTNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPF-FTEYIYQNLKKYIP 788 (1070)
T ss_pred HheehhhhHHH-HHHHHHHhhhhheehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHHHhcCC
Confidence 99999999999 99999875 888776554 33223334456778999999999999999 9998 99999999998887
Q ss_pred ----------HhcCCCC
Q 012397 456 ----------VFFDDSP 462 (464)
Q Consensus 456 ----------~~~~~~~ 462 (464)
||+...|
T Consensus 789 ~~~~~~~~~SVHfl~~P 805 (1070)
T KOG0434|consen 789 IDKNEKSERSVHFLSYP 805 (1070)
T ss_pred ccccCCccceeEEeecC
Confidence 7776665
|
|
| >PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=293.12 Aligned_cols=127 Identities=13% Similarity=0.043 Sum_probs=102.2
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc-CC----------------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL-GE---------------- 100 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~-g~---------------- 100 (464)
++-.+..++|++||.|||||+++.++.|+++|+.|++|++|.++.|+|.||.+|+.++++. |.
T Consensus 23 ~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~ 102 (601)
T PF00133_consen 23 PKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFRE 102 (601)
T ss_dssp GEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHH
T ss_pred CcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchh
Confidence 4555666778888999999999999999999999999999999999999999999888753 43
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC
Q 012397 101 NPLSLSNRYCQEYLVDMADLQCLPP-T--YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK 164 (464)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~lgi~~~-~--~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~ 164 (464)
.++++++++.+.+.+++++||++.+ + .++....+.+.++..|.+|.++|++|++...++||+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~ 169 (601)
T PF00133_consen 103 ECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSC 169 (601)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTT
T ss_pred hhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCccc
Confidence 2678999999999999999999752 1 12222378889999999999999999999999999885
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A .... |
| >TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=264.22 Aligned_cols=275 Identities=16% Similarity=0.187 Sum_probs=180.9
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCcccc------------------HHHHHHHHHcCC
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD------------------DKIIRRANDLGE 100 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g------------------~~i~~~a~~~g~ 100 (464)
...++.||.+|+|.+||||+|+++.+|+++|++|.+|++|.+++++||+| .++.......|.
T Consensus 18 ~~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~ 97 (515)
T TIGR00467 18 NLYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGC 97 (515)
T ss_pred CeEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCC
Confidence 35778888899999999999999999999999999999999999999994 333333333454
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc----------------hhHHHHHHHHHHHHHCCceEeecCcEEEc-CC
Q 012397 101 NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVS----------------DHMEQIKDMITQIINNDCAYVVEGDVFFA-VE 163 (464)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s----------------~~~~~~~~~~~~L~~~G~~y~~~~~~~~~-~~ 163 (464)
. .+++++|...+.+.|+.+||++ + +.+++ ++.+.+.+++.+.... ...+.||+ ..
T Consensus 98 ~-~s~~~h~~~~~~~~l~~~gi~~-e-~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~-----~~~~~~~P~~p 169 (515)
T TIGR00467 98 K-TSYAEHFLIPFLESLPVLGINP-E-FIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTS-----KLEENWYPISV 169 (515)
T ss_pred c-HHHHHHHHHHHHHHHHHcCCeE-E-EEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCC-----ccCCCceeeee
Confidence 3 9999999999999999999984 3 33333 2222233333333221 11233333 23
Q ss_pred CCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEec
Q 012397 164 KSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 243 (464)
Q Consensus 164 ~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G 243 (464)
-|++||++.. .+.+...+.++.+.+...+. .......|.- ..+|-..|| |.|..+ .+|+...|
T Consensus 170 ic~~cGrv~~-~~~~~~~~~~v~Y~c~cG~~----g~~~~~~g~~--KL~WkvdW~--------~RW~~l--gV~~Ep~G 232 (515)
T TIGR00467 170 FCENCGRDTT-TVNNYDNEYSIEYSCECGNQ----ESVDIYTGAI--KLPWRVDWP--------ARWKIE--KVTFEPAG 232 (515)
T ss_pred ecCCcCccCc-eEEEecCCceEEEEcCCCCE----EEEeecCCCc--ccCCCCCcH--------hhHhhh--CcccccCC
Confidence 5999999865 33233222234333211111 1111111110 223444433 222335 58999999
Q ss_pred ccCccccchHHHHH---HhhccCCCCccEEEEeeeeee--CCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCcc
Q 012397 244 IDLIFPHHENEIAQ---SCAACQDSNVSYWMHNGHVTN--NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318 (464)
Q Consensus 244 ~D~~~~h~~~~~a~---~~a~~~~~~~~~~~~~~~v~~--~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~ 318 (464)
+||..+-.++.... ..++++.+|..+ . ++|+.+ +|+|||||+||+|+++|+++.+++|++||++++.++.+++
T Consensus 233 kDH~~~ggsy~~~~~ia~~~l~~~~P~~~-~-ye~v~L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l~~~~~~~l 310 (515)
T TIGR00467 233 KDHAAAGGSYDTGVNIAKEIFQYSPPVTV-Q-YEWISLKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFARTKPEFHI 310 (515)
T ss_pred CCccCccCCchhHHHHHHHHhCCCCCcCc-E-EEEEEEcCCCccccCCCCCCccHHHHHHHcCHHHHHHHHhccCCCCCC
Confidence 99543221122211 235556666544 2 477756 5679999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 012397 319 NYSVLQLDSASDAVFYIYQTLQD 341 (464)
Q Consensus 319 ~f~~~~~~~~~~~l~~l~~~~~~ 341 (464)
+|+++.+ ++.+.+.++...+..
T Consensus 311 dFd~~~l-~~~dey~r~~~~~~~ 332 (515)
T TIGR00467 311 SFDLDVI-KLYEDYDKFERFYYG 332 (515)
T ss_pred cCCHHHH-HHHHHHHHHHHHHHh
Confidence 9999988 777777766655543
|
This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set. |
| >cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=235.96 Aligned_cols=207 Identities=19% Similarity=0.114 Sum_probs=155.2
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
++.|..+||||+|++||||+|++++||+|+|+||++|++|.+++++||+|++|...|.+.+ .|+++++.+.+.|.++++
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~~~ 79 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLETYG 79 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999997654 489999999999999999
Q ss_pred hcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCccccc
Q 012397 119 DLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198 (464)
Q Consensus 119 ~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~ 198 (464)
+|||++ |.+.++|++.+.++++++.|.++|++|+.++.+|+++.+. + .. .|+.
T Consensus 80 ~L~i~~-d~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~---~----------------------~~-~d~v 132 (212)
T cd00671 80 RLDVRF-DVWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEF---G----------------------DD-KDRV 132 (212)
T ss_pred HhCCcC-ceecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhh---C----------------------CC-CCeE
Confidence 999994 8889999888899999999999999999999999976432 0 01 1333
Q ss_pred ccccccCCCCcccCCCCCCCCchh---hHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccE-EEEee
Q 012397 199 LWKAAKAGEPSWDSPWGPGRPGWH---IECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY-WMHNG 274 (464)
Q Consensus 199 ~w~~~~~g~~~~~~~wg~~~P~w~---~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~-~~~~~ 274 (464)
+.|+ +|. |.|. +++...-.. .+.+..|++.|.|+.. |.....+.+.+++..+.+++ .+.+|
T Consensus 133 l~rs--dG~-----------~~Y~~~DlA~~~~~~~-~~~~~~i~v~g~~~~~-~~~~~~~~~~~lg~~~~~~~~h~~~~ 197 (212)
T cd00671 133 LVRS--DGT-----------YTYFTRDIAYHLDKFE-RGADKIIYVVGADHHG-HFKRLFAALELLGYDEAKKLEHLLYG 197 (212)
T ss_pred EEEC--CCC-----------ccchHHHHHHHHHHHh-cCCCEEEEEECCCHHH-HHHHHHHHHHHcCCCCCCCeEEEEEE
Confidence 4432 343 3333 222111111 3445678899999431 12223344445554422222 22237
Q ss_pred eeeeC-CcccccccC
Q 012397 275 HVTNN-NEKMSKSLG 288 (464)
Q Consensus 275 ~v~~~-G~KmSks~g 288 (464)
+|++. |+|||||+|
T Consensus 198 ~v~~~~~~kmS~R~G 212 (212)
T cd00671 198 MVNLPKEGKMSTRAG 212 (212)
T ss_pred eEEcCCCCCCCCCCC
Confidence 88875 999999987
|
Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. |
| >KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=236.96 Aligned_cols=358 Identities=12% Similarity=0.085 Sum_probs=256.5
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHH-------------------------
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI------------------------- 91 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i------------------------- 91 (464)
.+++.|.+++||..+.+|+||+|+.||||.++|.+++.|++|+.+|++.|||+..
T Consensus 187 ~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQ 266 (656)
T KOG4426|consen 187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQ 266 (656)
T ss_pred eeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHH
Confidence 4899999999999999999999999999999999999999999999999998521
Q ss_pred ----------------HHHHHHc-----CCC------hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHH
Q 012397 92 ----------------IRRANDL-----GEN------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQ 144 (464)
Q Consensus 92 ----------------~~~a~~~-----g~~------~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~ 144 (464)
-.+|.+. |.+ |.-+|+-...++...+++|.|+. .....|.|.+.+.+++++
T Consensus 267 vFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l--~e~GESFYq~~m~~vvee 344 (656)
T KOG4426|consen 267 VFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISL--KERGESFYQDRMAEVVEE 344 (656)
T ss_pred HHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchH--hhcchhhhhhHHHHHHHH
Confidence 0112111 222 57788999999999999999984 445667899999999999
Q ss_pred HHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhH
Q 012397 145 IINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIE 224 (464)
Q Consensus 145 L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~ 224 (464)
|..+|++.+.++....-+..| +- .+---.++|.-++++. .
T Consensus 345 l~~kglvee~~Gr~i~f~~g~---~I---------------------------PLtvVKSDGGftYdts----------D 384 (656)
T KOG4426|consen 345 LKSKGLVEEDDGRRIMFPEGC---DI---------------------------PLTVVKSDGGFTYDTS----------D 384 (656)
T ss_pred HhcCCceeecCCceEeccCCC---Cc---------------------------ceEEEecCCCcccccc----------h
Confidence 999999998776543333222 10 0000112222222210 0
Q ss_pred HHHHHHhhc--CCCeeEEEe--cccCccccchHHHHHHhhccCCCCccEEEEeeeeee---CCcccccccCCccCHHHHH
Q 012397 225 CSAMSAHYL--SSKFDIHGG--GIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN---NNEKMSKSLGNFFTIRQIT 297 (464)
Q Consensus 225 ~~~~~~~~~--~~~~~i~~~--G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~---~G~KmSks~gn~i~~~dll 297 (464)
.+++..+.. .....|++. |+-. .|..++-.++..++..+..+++ -|.||.++ ||+||-++.|.+|-+.|++
T Consensus 385 laAl~yRl~EEkadwiIYVvD~GQs~-Hf~t~fkAar~~gwld~~~~RV-~HvgFGlVLGeD~KkFkTRsgetVrL~DLL 462 (656)
T KOG4426|consen 385 LAALKYRLNEEKADWIIYVVDSGQSQ-HFNTIFKAARKAGWLDPTYPRV-EHVGFGLVLGEDKKKFKTRSGETVRLLDLL 462 (656)
T ss_pred HHHHHHHHHHhhcCeEEEEeeCchhH-HHHHHHHHHHHcCccCCCccce-eeeeeeeEEccCcccccccccceeeHHHHH
Confidence 111111100 012334444 3331 1111222232233334555666 67788766 7889999999999999999
Q ss_pred Hh-----------------------------cCchhHHHHHhhcCCCCccCCCHHHHHHHHHH-HHHHHHHHHHHHHhcC
Q 012397 298 ER-----------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSASDA-VFYIYQTLQDCEVALS 347 (464)
Q Consensus 298 ~~-----------------------------~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~-l~~l~~~~~~~~~~l~ 347 (464)
++ ++-..++|.-+++..-.+.-||.|.|.+-+++ .-||.|+++|++|+.+
T Consensus 463 dEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~r 542 (656)
T KOG4426|consen 463 DEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLEDRGNTAVYLLYAYTRICSIAR 542 (656)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccccccceeeeHHHHhhccCcceehhHHHHHHHHHHHH
Confidence 62 34456888889988889999999999877655 4599999999999987
Q ss_pred ccccCC--------------CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCch--
Q 012397 348 PFQEHG--------------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-- 411 (464)
Q Consensus 348 ~~~~~~--------------~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~-- 411 (464)
+..... ..++.|..|-..|.++.+-+.++. +++ +++.++.|+++++..|..||+.|......
T Consensus 543 ksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~-~~L-~lh~lC~y~y~l~t~Ft~FY~~Cyv~e~~~e 620 (656)
T KOG4426|consen 543 KSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKAL-DSL-FLHVLCDYLYELATLFTEFYDSCYVIEKNKE 620 (656)
T ss_pred HcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHhhccEEeccccc
Confidence 754221 124556778889999999999999 776 78888999999999999999999774311
Q ss_pred ----hhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 412 ----QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 412 ----~~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
...-.|+.+|.+++.+++.++.||||.|-
T Consensus 621 g~i~~vn~sRllLCeata~VmrkcF~iLGi~pV 653 (656)
T KOG4426|consen 621 GEIPFVNMSRLLLCEATAAVMRKCFHILGIKPV 653 (656)
T ss_pred cccccchhHHHHHHHHHHHHHHHhhHhhCCccc
Confidence 12368999999999999999999999885
|
|
| >COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-27 Score=233.77 Aligned_cols=274 Identities=15% Similarity=0.148 Sum_probs=189.5
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccH--HH----H--HHHH-HcCCC--------
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD--KI----I--RRAN-DLGEN-------- 101 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~--~i----~--~~a~-~~g~~-------- 101 (464)
...++-||.+|+|.+||||+|..+++|+++|.||.+|++|.+|+-+||+|. ++ . ..+. -.|++
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 457888999999999999999999999999999999999999999999984 21 1 2222 23543
Q ss_pred --hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc----------------hhHHHHHHHHHHHHHCCceEeecCcEEEc-C
Q 012397 102 --PLSLSNRYCQEYLVDMADLQCLPPTYQPRVS----------------DHMEQIKDMITQIINNDCAYVVEGDVFFA-V 162 (464)
Q Consensus 102 --~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s----------------~~~~~~~~~~~~L~~~G~~y~~~~~~~~~-~ 162 (464)
+.++++++...|.+.|+.+||.+ + +.+++ ++.+.+.+++.+...+ +.. +-||. .
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~-E-~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~----~~~-e~~~P~~ 171 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEV-E-FVSATELYKSGLYDEAIRIALERRDEIMEILNEYRGR----ELE-EDWSPFM 171 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCce-E-EEEhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhcCC----ccc-CCceecc
Confidence 58999999999999999999974 2 23332 3334444444444333 111 22332 3
Q ss_pred CCCCCCCCCCCccccccccCCCcccCCcccCcccccccccc--cCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEE
Q 012397 163 EKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAA--KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIH 240 (464)
Q Consensus 163 ~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~--~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~ 240 (464)
.-|+.||++....+.+...+.++...|...+. .+... ..|.. +|-+.||. .|..+ .+|+.
T Consensus 172 piC~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~----g~v~ir~g~~KL----~WRvdWp~--------RW~~l--gVd~E 233 (521)
T COG1384 172 PICEKCGRILTTPVIEWDGEGTVEYRCECGHE----GEVDIRGGEGKL----PWRVDWPM--------RWAAL--GVDFE 233 (521)
T ss_pred ccccccCCcceeEEEEecCCceEEEEecCCcc----ceeeccccCccc----ccCcCccc--------hhhcc--Ccccc
Confidence 35999999776666555333344444322221 11111 12223 34444332 12234 48999
Q ss_pred EecccCccccchHHHHHHhhc---cCCCCccEEEEeeeeeeCC-cccccccCCccCHHHHHHhcCchhHHHHHhhcCCCC
Q 012397 241 GGGIDLIFPHHENEIAQSCAA---CQDSNVSYWMHNGHVTNNN-EKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316 (464)
Q Consensus 241 ~~G~D~~~~h~~~~~a~~~a~---~~~~~~~~~~~~~~v~~~G-~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~ 316 (464)
..||||...-.++..+...+- +.+||..++ ++|++++| +|||||+||+|+++|+++.+.++.|||+++++.+.+
T Consensus 234 PfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~--YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~r 311 (521)
T COG1384 234 PFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFV--YEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNR 311 (521)
T ss_pred cCCcccccccCchHHHHHHHHHhcCCCCCCCCc--eEEEEecCCcccccCCCcEEcHHHHHHhcCHhHeeeeeeecCCCc
Confidence 999997766666655554443 456777663 59999977 799999999999999999999999999999998888
Q ss_pred ccCCCHHH-HHHHHHHHHHHHHHH
Q 012397 317 PLNYSVLQ-LDSASDAVFYIYQTL 339 (464)
Q Consensus 317 ~~~f~~~~-~~~~~~~l~~l~~~~ 339 (464)
.++|+.+. +.+.+..+.++...+
T Consensus 312 ~~~~d~~~~il~lvDEydr~e~~Y 335 (521)
T COG1384 312 HIDFDFDLGILKLVDEYDRLERIY 335 (521)
T ss_pred ceecCCCCChhHHHHHHHHHHHHH
Confidence 88888887 777776655444443
|
|
| >PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-27 Score=231.40 Aligned_cols=276 Identities=17% Similarity=0.236 Sum_probs=152.3
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccH--HHHHHHH------HcCCC--------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD--KIIRRAN------DLGEN-------- 101 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~--~i~~~a~------~~g~~-------- 101 (464)
+...++-||.+|+|.+||||+|.++++|+++|.||.+|.+|.++..+||+|. ||....- -.|++
T Consensus 22 ~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~ 101 (360)
T PF01921_consen 22 KEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPF 101 (360)
T ss_dssp -SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TT
T ss_pred CccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCC
Confidence 5678888999999999999999999999999999999999999999999984 3322111 12332
Q ss_pred --hHHHHHHHHHHHHHHHHhcCCCCCCC-----CCCcc----------hhHHHHHHHHHHHHHCCceEeecCcEEEcC-C
Q 012397 102 --PLSLSNRYCQEYLVDMADLQCLPPTY-----QPRVS----------DHMEQIKDMITQIINNDCAYVVEGDVFFAV-E 163 (464)
Q Consensus 102 --~~~~~~~~~~~~~~~l~~lgi~~~~~-----~~r~s----------~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~-~ 163 (464)
..+|+++|...|.+.|+.+||.+ +. ..++- ++.+.+.+++.+...... .+.||+. .
T Consensus 102 G~~~SyaeH~~~~~~~~L~~~gie~-e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~~-----~~~y~Pf~p 175 (360)
T PF01921_consen 102 GCHESYAEHFNAPFEEFLDEFGIEY-EFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRER-----PETYSPFLP 175 (360)
T ss_dssp SSSSCHHHHHHHHHHHHHHTTT----EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT-------TT--SEEE
T ss_pred CCCccHHHHHHHHHHHHHHHcCCce-EEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcCC-----CCCeeeeee
Confidence 37899999999999999999974 21 11111 344455555555543321 1223322 2
Q ss_pred CCCCCCCCCCccccccc-cCCCcccCCcccCcccccccccccCCCCcc-cCCCCCCCCchhhHHHHHHHhhcCCCeeEEE
Q 012397 164 KSPNYGRLSGQRLENNR-AGERVAVDSRKRNPADFALWKAAKAGEPSW-DSPWGPGRPGWHIECSAMSAHYLSSKFDIHG 241 (464)
Q Consensus 164 ~~~~~g~l~~~~~~~~~-~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~-~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~ 241 (464)
-|+.||++....+.+.. ++.++...+. ..|.... +..-|.+...|.++++ |.|..+ .+++..
T Consensus 176 iC~~cGri~tt~v~~~d~~~~~v~Y~c~-------------~cG~~g~~~i~~g~gKL~WkvDW~-mRW~~l--gVdfEp 239 (360)
T PF01921_consen 176 ICEKCGRIDTTEVTEYDPEGGTVTYRCE-------------ECGHEGEVDITGGNGKLQWKVDWP-MRWAAL--GVDFEP 239 (360)
T ss_dssp EETTTEE--EEEEEEE--SSSEEEEE---------------TTS---EEETTTT-EEE-HHHHHH-HHHHHT--T-SEEE
T ss_pred eccccCCcccceeeEeecCCCEEEEEec-------------CCCCEEEEecCCCcccccCCCcCh-hhhhhc--Cceecc
Confidence 48999997665555543 2333333220 1111100 1111345566766653 334556 489999
Q ss_pred ecccCccccchHHHHHHhh---ccCCCCccEEEEeeeeeeCCc-ccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCc
Q 012397 242 GGIDLIFPHHENEIAQSCA---ACQDSNVSYWMHNGHVTNNNE-KMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317 (464)
Q Consensus 242 ~G~D~~~~h~~~~~a~~~a---~~~~~~~~~~~~~~~v~~~G~-KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~ 317 (464)
.||||..+..++..+..++ ++.+||..+ .++|++++|+ |||||+||+++++|+++.+.|+.|||+++++.+.+.
T Consensus 240 ~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~--~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~~~P~~~ 317 (360)
T PF01921_consen 240 FGKDHASPGGSYDTSKRIAREILGYEPPVPF--PYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMARTKPNKA 317 (360)
T ss_dssp EEHHHHCTTSHHHHHHHHHHHCC-----EEE--EE--EEES--------------HHHHHTTS-HHHHHHHHHCS-TTS-
T ss_pred CCCccCCCCCChhhHHHHHHHHhCCCCCCCC--CeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHcccCCCcc
Confidence 9999766555555555444 345555543 4699999776 999999999999999999999999999999888888
Q ss_pred cCCCHH-HHHHHHHHHHHHHH
Q 012397 318 LNYSVL-QLDSASDAVFYIYQ 337 (464)
Q Consensus 318 ~~f~~~-~~~~~~~~l~~l~~ 337 (464)
.+|+.+ .+......+.++..
T Consensus 318 ~~~~~~~~i~~~~Deyd~~~~ 338 (360)
T PF01921_consen 318 KDFSFDLVIPRLYDEYDRLER 338 (360)
T ss_dssp EEE--STTHHHHHHHHHHHHH
T ss_pred eEeccCcchHHHHHHHHHHHH
Confidence 888888 77777766654443
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A. |
| >PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-25 Score=222.15 Aligned_cols=248 Identities=19% Similarity=0.116 Sum_probs=154.9
Q ss_pred cCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHH-------HHc--------
Q 012397 34 PIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRA-------NDL-------- 98 (464)
Q Consensus 34 ~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a-------~~~-------- 98 (464)
+..+++|.|..++|||+||+||||+|++++||+|+|+|+..|++|...++++|+|..+..-+ .+.
T Consensus 16 ~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~ 95 (354)
T PF00750_consen 16 KGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIK 95 (354)
T ss_dssp TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHH
T ss_pred cCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhccccccc
Confidence 33468999999999999999999999999999999999999999999999999996542211 100
Q ss_pred ----------------CC------------------------ChHHHHHH-HHHHHHHHHHhcCCCCCCCCCCcc--hhH
Q 012397 99 ----------------GE------------------------NPLSLSNR-YCQEYLVDMADLQCLPPTYQPRVS--DHM 135 (464)
Q Consensus 99 ----------------g~------------------------~~~~~~~~-~~~~~~~~l~~lgi~~~~~~~r~s--~~~ 135 (464)
.. ...++... ..+.+.++|+++++.+ |.+...+ .+.
T Consensus 96 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~f-Dv~~~E~Es~~~ 174 (354)
T PF00750_consen 96 HLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRF-DVWFDESESFYS 174 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT----SEEEEHCHHHHT
T ss_pred chhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHh-CcCcccchhhhh
Confidence 00 01223333 6667888899999985 5544223 345
Q ss_pred HHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCC
Q 012397 136 EQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWG 215 (464)
Q Consensus 136 ~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg 215 (464)
..+.+++++|.++|++|+.++..|+..... |. ..+..+-| ++|..
T Consensus 175 ~~v~~vl~~L~e~g~~~~~dGa~~i~~~~~---g~-----------------------~k~~Vl~k--sDGt~------- 219 (354)
T PF00750_consen 175 GKVDEVLERLKEKGLLYESDGALWIDLTKF---GD-----------------------DKDRVLRK--SDGTS------- 219 (354)
T ss_dssp THHHHHHHHHHCTTTEEEETTEEEEEGCCT---ST-----------------------SS-EEEEE--TTSEB-------
T ss_pred hHHHHHHHHHHhCCcEEecCCcEEEechhc---CC-----------------------CCcceEEc--CCCce-------
Confidence 668899999999999998888888765432 11 00222222 23332
Q ss_pred CCCCchhhH-HHHHHHhh--cCCCeeEEEecccCccccchHHHHHHhhccCCC-CccEE-EEeeeeee-CCc-ccccccC
Q 012397 216 PGRPGWHIE-CSAMSAHY--LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDS-NVSYW-MHNGHVTN-NNE-KMSKSLG 288 (464)
Q Consensus 216 ~~~P~w~~~-~~~~~~~~--~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~-~~~~~-~~~~~v~~-~G~-KmSks~g 288 (464)
.|... +++...+. .+....|++.|.||. .|.....+.+.+++..+ -.++. +..|+++. +|+ |||||+|
T Consensus 220 ----~Y~trDiA~~~~r~~~~~~d~~iyV~~~~q~-~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk~~mstR~G 294 (354)
T PF00750_consen 220 ----TYLTRDIAYHLYRFEEYGFDKIIYVVGADQK-GHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGKVKMSTRKG 294 (354)
T ss_dssp -----HHHHHHHHHHHHHCCSS-SEEEEEEEGGGH-HHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBEESS-TTTT
T ss_pred ----EEEcchHHHHHHHHhhhccccEEEEecCchh-hHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCCccccCCCC
Confidence 22211 11112222 455677999999932 11122234444455422 22331 33456655 787 8999999
Q ss_pred CccCHHHHHH--------------------------hcCchhHHHHHhhcCCCCccCCCH
Q 012397 289 NFFTIRQITE--------------------------RYHPLALRHFLISAHYRSPLNYSV 322 (464)
Q Consensus 289 n~i~~~dll~--------------------------~~~~dalR~~ll~~~~~~~~~f~~ 322 (464)
|+|+++||++ .+|.+|+||++|+.++.+++.|+|
T Consensus 295 ~~i~l~dllde~~~~a~~~~~~~~~~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 295 NVITLDDLLDEAVERALEIMEKNPDLSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp SSTBHHHHHHHHHHHHHHHHHHHTTCTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred CceEHHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 9999999999 577889999999888888888875
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B. |
| >cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=183.67 Aligned_cols=142 Identities=27% Similarity=0.317 Sum_probs=117.6
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
|+.|+|+|+|++||||+|+++++|+++|++|.+|++|.+++++||+|+++...+.+.+.+++++++++.+.|.+.++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--- 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE--- 77 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccc
Q 012397 122 CLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWK 201 (464)
Q Consensus 122 i~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~ 201 (464)
|
T Consensus 78 --------------------------------------y----------------------------------------- 78 (143)
T cd00802 78 --------------------------------------Y----------------------------------------- 78 (143)
T ss_pred --------------------------------------H-----------------------------------------
Confidence 1
Q ss_pred cccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeee-CC
Q 012397 202 AAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NN 280 (464)
Q Consensus 202 ~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G 280 (464)
+.+++++.........++++.|+|+.. |+.....+..+++... +..++|.++++. +|
T Consensus 79 --------------------~~~~~a~~~~~~~~~~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~-~p~~~~~~~l~~~~g 136 (143)
T cd00802 79 --------------------MFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPA-RPFGLTFGRVMGADG 136 (143)
T ss_pred --------------------HHHHHHHHHHHhhCCcEEEEechhHHH-HHHHHHHHHHHhCCCC-CceEEEeCCeECCCC
Confidence 111222222222223689999999888 8888888888876543 334578899988 66
Q ss_pred ccccccc
Q 012397 281 EKMSKSL 287 (464)
Q Consensus 281 ~KmSks~ 287 (464)
+|||||+
T Consensus 137 ~KmSks~ 143 (143)
T cd00802 137 TKMSKSK 143 (143)
T ss_pred CcCCCCC
Confidence 8999995
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-22 Score=195.56 Aligned_cols=358 Identities=15% Similarity=0.079 Sum_probs=245.1
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHH----------------------
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRR---------------------- 94 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~---------------------- 94 (464)
.+++.|..++||.+++.|+||+|+.++|-.++...+..|++|..+++..|+|..+-.-
T Consensus 109 ~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL~ 188 (567)
T KOG1195|consen 109 GKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHLF 188 (567)
T ss_pred CceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHHH
Confidence 5899999999999999999999999999999999999999999999999997422100
Q ss_pred --HHHc----------------------CCC------hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc-hhHHHHHHHHH
Q 012397 95 --ANDL----------------------GEN------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVS-DHMEQIKDMIT 143 (464)
Q Consensus 95 --a~~~----------------------g~~------~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s-~~~~~~~~~~~ 143 (464)
+.+. +.+ |+.+.+-....+.+.+++|||.+ |.+...| ...+.+++..+
T Consensus 189 dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~F-D~y~gESqv~~e~~~~~~d 267 (567)
T KOG1195|consen 189 DVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKF-DEYSGESQVSNEKMQEALD 267 (567)
T ss_pred HHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceee-eeccchHHHHHHHHHHHHH
Confidence 0000 000 34466666677778888899985 7777766 55677888888
Q ss_pred HHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhh
Q 012397 144 QIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHI 223 (464)
Q Consensus 144 ~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~ 223 (464)
.+...|+..+.++..+++......-. | -.++-+ ++|..-+.+ + .
T Consensus 268 ~~rs~~l~~e~dG~~vidL~~~~~~~------------~-------------~~~V~k--sdgttLYlt---R-----d- 311 (567)
T KOG1195|consen 268 LLRSANLTEEIDGTIVIDLSKIDKKA------------G-------------KAVVQK--SDGTTLYLT---R-----D- 311 (567)
T ss_pred HHHhcCCcccCCCcEEEEecccCccc------------c-------------eEEEEc--CCCceehHH---H-----H-
Confidence 88888877666666666554211000 0 000000 111100000 0 0
Q ss_pred HHHHHHHhh--cCCCeeEEEe--cccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHH-
Q 012397 224 ECSAMSAHY--LSSKFDIHGG--GIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE- 298 (464)
Q Consensus 224 ~~~~~~~~~--~~~~~~i~~~--G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~- 298 (464)
..+...++ +...--|++. +++. |......+..+++.. |..-+-|..|..+. -||+++|.++.+.|+++
T Consensus 312 -iaaal~Rl~~y~fdr~iYVvd~~Q~~---hf~~lf~ilk~mg~~-~a~~~qHV~~G~v~--GmsTRkG~~~fl~dil~e 384 (567)
T KOG1195|consen 312 -IAAALDRLEKYSFDRLIYVVDSQQKD---HFCQLFEILKKMGFD-WAKKLQHVNFGRVQ--GMSTRKGKVVFLDDILEE 384 (567)
T ss_pred -HHHHHHHHHhcCcceEEEEechHHHH---HHHHHHHHHHHhCch-hhhhcceecccccc--cccccCCceeeHHHHHHH
Confidence 11111111 1112234444 3332 544445555666654 12222333444444 49999999999998886
Q ss_pred ---------------------------hcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHH-HHHHHHHHHHHhcCccc
Q 012397 299 ---------------------------RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVF-YIYQTLQDCEVALSPFQ 350 (464)
Q Consensus 299 ---------------------------~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~-~l~~~~~~~~~~l~~~~ 350 (464)
.+|.-|+..-.+.....++..|+|+.+-+..+..+ +|+|++.|+.++.+++.
T Consensus 385 ~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~ 464 (567)
T KOG1195|consen 385 AREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFS 464 (567)
T ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHhcccceEEhhhhheecCCchHHHHHHHHHHHHHHHhcc
Confidence 36788888888877778899999999998887665 99999999999987765
Q ss_pred cCCC-----------ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchh-hhhhHH
Q 012397 351 EHGK-----------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ-QQLSLI 418 (464)
Q Consensus 351 ~~~~-----------~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~-~~~~r~ 418 (464)
.... .+|.-..|+..|..+++.+..++ +.++....+. ||+.++..++++|...++.+.+. ..-.|+
T Consensus 465 ~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~-e~lE~~~lV~-YL~~La~a~s~~yk~l~V~d~~~eia~aRL 542 (567)
T KOG1195|consen 465 DVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSM-EQLEPCTLVT-YLFKLAHAVSSAYKILWVKDSPMEIALARL 542 (567)
T ss_pred ccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHH-HhhcchhHHH-HHHHHHHHHHhHHhheeecCCcHHHHHHHH
Confidence 2110 12223567889999999999999 8988655554 59999999999998877754333 356899
Q ss_pred HHHHHHHHHHHHHHHhhccCCC
Q 012397 419 ESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 419 ~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
.+..+++.+|.+++.+|||+|-
T Consensus 543 ~Lf~AvRqVL~ngm~lLGitPv 564 (567)
T KOG1195|consen 543 LLFSAVRQVLNNGMRLLGITPV 564 (567)
T ss_pred HHHHHHHHHHHhHHHHhCCCcc
Confidence 9999999999999999999995
|
|
| >PRK04156 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-22 Score=205.91 Aligned_cols=259 Identities=24% Similarity=0.251 Sum_probs=172.9
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
+++|..- ++|+|||+|||||||++++.+.+|| +++..++..+||.+.++ .+ ....+.+.|.++
T Consensus 99 ~g~V~tR-FaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~-~R----------~~~e~~~~I~ed 161 (567)
T PRK04156 99 KGKVVMR-FAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRT-KR----------PDPEAYDMILED 161 (567)
T ss_pred CCeEEEE-eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCc-cc----------chHHHHHHHHHH
Confidence 4566666 7899999999999999999999999 35556666667666644 22 123466899999
Q ss_pred HHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC---------C-CCCCCCCCcc-c---cccccC
Q 012397 117 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------S-PNYGRLSGQR-L---ENNRAG 182 (464)
Q Consensus 117 l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~---------~-~~~g~l~~~~-~---~~~~~g 182 (464)
|++||+.+ |...++|++.+.+.++..+|+++|++|. ++|... . ..|..++..+ + +++.+|
T Consensus 162 L~wLGl~w-D~~~~qSdr~~~y~~~a~~Li~~G~AY~-----C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G 235 (567)
T PRK04156 162 LKWLGVKW-DEVVIQSDRLEIYYEYARKLIEMGGAYV-----CTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDG 235 (567)
T ss_pred HHHcCCCC-CCccCcccCHHHHHHHHHHHHHcCCCcc-----CCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcC
Confidence 99999986 7788999999999999999999999994 333221 0 1133232211 1 222223
Q ss_pred C--------CcccCCcccCc--ccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCcc---c
Q 012397 183 E--------RVAVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF---P 249 (464)
Q Consensus 183 ~--------~~~~~~~k~~~--~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~---~ 249 (464)
. |+..+....++ .||.+|+......+ .||.+++.|.. ..|..++|-|..|.+|+. -
T Consensus 236 ~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~h~----~~Gd~~~i~Pt-------Y~fA~~VDD~l~GITHViRg~d 304 (567)
T PRK04156 236 EYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHP----RVGDKYRVWPT-------YNFAVAVDDHLLGVTHVLRGKD 304 (567)
T ss_pred ccccCCeEEEEECcccCCCCCccccEEEEEcCCCcc----ccCCCeEEEEE-------eccCceeeecCCCCCeEEcccc
Confidence 2 22222222333 68888875332222 36776544421 013335555555555444 3
Q ss_pred cchHHHHHHh---hccCCCCccEEEEeeeeeeCCccccccc-------C--------CccCHHHHHHh-cCchhHHHHHh
Q 012397 250 HHENEIAQSC---AACQDSNVSYWMHNGHVTNNNEKMSKSL-------G--------NFFTIRQITER-YHPLALRHFLI 310 (464)
Q Consensus 250 h~~~~~a~~~---a~~~~~~~~~~~~~~~v~~~G~KmSks~-------g--------n~i~~~dll~~-~~~dalR~~ll 310 (464)
|..+.+.+.. +++.. ++ .+.|.+.++.+|.|||||+ | +..++..+.+. +.|+|+|.|++
T Consensus 305 ~~~~t~~Q~~l~~~Lg~~-~P-~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~ 382 (567)
T PRK04156 305 HIDNTEKQRYIYDYFGWE-YP-ETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELII 382 (567)
T ss_pred cccChHHHHHHHHHcCCC-Cc-eEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHH
Confidence 6655555543 33433 33 4588999989999999998 5 34677787775 99999999999
Q ss_pred hcCCC-CccCCCHHHHHHHHHH
Q 012397 311 SAHYR-SPLNYSVLQLDSASDA 331 (464)
Q Consensus 311 ~~~~~-~~~~f~~~~~~~~~~~ 331 (464)
...+. ++..|+++.+.+..+.
T Consensus 383 ~lG~s~~~~~~~~~~L~~~nr~ 404 (567)
T PRK04156 383 EVGVKETDATISWENLYAINRK 404 (567)
T ss_pred HhCCCCCCcccCHHHHHHHHHH
Confidence 87665 8999999999877654
|
|
| >KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-19 Score=179.87 Aligned_cols=216 Identities=19% Similarity=0.126 Sum_probs=160.6
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~- 312 (464)
.|+|+.+.|+|++..|..+......|+.. +.|++-.-.|||++++++|||||.||+.++++.++++|+|+.|+.|+-.
T Consensus 662 YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaG 741 (1080)
T KOG0437|consen 662 YPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAG 741 (1080)
T ss_pred cceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCeeeHHHHHHHhCccceeeeeeccc
Confidence 39999999999999999887776777664 4666666779999999999999999999999999999999999999986
Q ss_pred CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q 012397 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 392 (464)
Q Consensus 313 ~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~ 392 (464)
+--.|.+|......++.=.+......+..++........+....-.|+-+..+++.++....+++ ++..+..|+..=++
T Consensus 742 D~veDANF~ea~AnAaILRLyt~~ew~eEm~~~~s~LrtGp~~~FaDrvf~nemN~~i~~t~~ay-e~~~fk~aLK~Gfy 820 (1080)
T KOG0437|consen 742 DGVEDANFVEANANAAILRLYTYVEWIEEMCENRSSLRTGPASTFADRVFENEMNALIAKTERAY-EDTLFKDALKYGFY 820 (1080)
T ss_pred CCcccchhHHhcccHHHHHHHHHHHHHHHHHhhHHhhccCchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhhhH
Confidence 66789999987766665555544444443332211111222233468889999999999999999 88899999987566
Q ss_pred HHHHHHHHHhhhhc-ccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCCC
Q 012397 393 DALKFINSSLNMLK-KKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSPF 463 (464)
Q Consensus 393 ~l~~~~n~~~~~~~-~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~~ 463 (464)
++...=..|-..|- +. .| ..+...++.-..||. |.|+ .+|.||+.+...-...+--|||
T Consensus 821 d~qaArD~Yrel~g~~m-------h~----dLv~r~ietqtlLLaPi~Ph-~aeyiw~~~~~~~~~v~~~wP~ 881 (1080)
T KOG0437|consen 821 DLQAARDMYRELCGEGM-------HR----DLVFRFIETQTLLLAPICPH-LAEYIWRTVLKKNFSVNVGWPF 881 (1080)
T ss_pred HHHHHHHHHHHHhcccc-------cH----HHHHHHHHHHHHHHhccchH-HHHHHHHHhccCCceeecCCCC
Confidence 66554444433332 10 01 245567777788888 9999 9999999886655555557776
|
|
| >TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-17 Score=168.60 Aligned_cols=251 Identities=17% Similarity=0.154 Sum_probs=150.0
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|.|||||+|+++....+|| ...|.=++.+--|| . . .....+.+.+.++|++||+.++
T Consensus 7 APsPtG~lHiG~~rtal~n~l~Ar--~~~G~~iLRieDtD---~---~----------R~~~~~~~~i~~~L~wlGl~~d 68 (470)
T TIGR00464 7 APSPTGYLHIGGARTALFNYLFAK--HTGGEFILRIEDTD---L---E----------RNIEEAEEAILEGLKWLGISWD 68 (470)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCC---C---c----------cCChHHHHHHHHHHHHCCCCCC
Confidence 488999999999999999999999 66777666666665 1 1 1233578899999999999975
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CC----CCCCCCCccccc-cccCCCcc
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SP----NYGRLSGQRLEN-NRAGERVA 186 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~----~~g~l~~~~~~~-~~~g~~~~ 186 (464)
+...++|++.+.+++...+|+++|.+| .|||..+ .| .|..++..+..+ ...|....
T Consensus 69 e~~~~QS~r~~~y~~~~~~L~~~g~aY-----~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~ 143 (470)
T TIGR00464 69 EGPYYQSQRLDIYKKYAKELLEEGLAY-----RCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPV 143 (470)
T ss_pred CCeeehhCCHHHHHHHHHHHHHcCCEE-----ecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCce
Confidence 567788999999999999999999999 5565432 11 122222211110 01111100
Q ss_pred cCCcccCcccc-cccccccCCCCc--------ccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHH
Q 012397 187 VDSRKRNPADF-ALWKAAKAGEPS--------WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (464)
Q Consensus 187 ~~~~k~~~~d~-~~w~~~~~g~~~--------~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~ 257 (464)
+. .|. |.+. ..|...-.|... +.....+|.|+|+.++... ....+ ++-.+.|.|+.. |.......
T Consensus 144 iR-~k~-~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vd-D~~~~--ithvIrG~d~~~-~t~~~~~l 217 (470)
T TIGR00464 144 VR-FKI-PQEAVVSFNDQVRGEITFQNSELDDFVILRSDGSPTYNFAVVVD-DYLMK--ITHVIRGEDHIS-NTPKQILI 217 (470)
T ss_pred EE-EEc-CCCCceeEEecccceEEecCccCCCeEEEecCCCcccccHHHHH-HHhCC--CCEEEECchhhc-CHHHHHHH
Confidence 00 000 0000 011111111110 1112345778888654321 12233 555558899442 12233444
Q ss_pred HhhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHh-cCc------------------------hhHHHHHhh
Q 012397 258 SCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER-YHP------------------------LALRHFLIS 311 (464)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~-~~~------------------------dalR~~ll~ 311 (464)
..+++..+ + .+.|..+++ .+|+|||||+| .++++++++. |-+ +++|++.++
T Consensus 218 ~~aLg~~~-p-~~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~~e~~~~~~~i~~f~l~ 294 (470)
T TIGR00464 218 YQALGWKI-P-VFAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFFSLEELIEIFSLN 294 (470)
T ss_pred HHHcCCCC-C-eEEEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcCCCCCCccccCCHHHHHHhcCcc
Confidence 55666443 3 346766644 49999999999 6899999886 234 456666655
Q ss_pred cCCCCccCCCHHHHHHH
Q 012397 312 AHYRSPLNYSVLQLDSA 328 (464)
Q Consensus 312 ~~~~~~~~f~~~~~~~~ 328 (464)
....+++.||++.+.-.
T Consensus 295 ~~~~~~~~fd~~kL~~~ 311 (470)
T TIGR00464 295 RVSKSPAKFDWKKLQWL 311 (470)
T ss_pred cCCCCCCeecHHHHHHH
Confidence 54556777777775543
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences. |
| >cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.4e-18 Score=157.34 Aligned_cols=210 Identities=20% Similarity=0.189 Sum_probs=144.3
Q ss_pred EeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCC
Q 012397 44 VCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCL 123 (464)
Q Consensus 44 ~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 123 (464)
=|+|+|||++||||+|+++..+++|| ++++.++..+||.+.+.+ .....+.+.|.++|++||+.
T Consensus 5 RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~-----------~~~~~~~~~i~~dL~wLGl~ 68 (240)
T cd09287 5 RFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK-----------RPDPEAYDMIPEDLEWLGVK 68 (240)
T ss_pred eCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc-----------cchHHHHHHHHHHHHHcCCC
Confidence 37899999999999999999999999 577788888888876442 12333556699999999997
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccc
Q 012397 124 PPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAA 203 (464)
Q Consensus 124 ~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~ 203 (464)
+ |..+++|++.+.++++.++|+++|.+|.. +.. | .||.+|
T Consensus 69 ~-d~~~~qS~r~~~y~~~~~~Li~~G~aY~~-----------~~~-------------~------------~~~~i~--- 108 (240)
T cd09287 69 W-DEVVIASDRIELYYEYARKLIEMGGAYVH-----------PRT-------------G------------SKYRVW--- 108 (240)
T ss_pred C-CCccchhccHHHHHHHHHHHHHcCCcccC-----------ccc-------------C------------CcEEEE---
Confidence 5 77889999999999999999999999950 000 1 022222
Q ss_pred cCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCccc
Q 012397 204 KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKM 283 (464)
Q Consensus 204 ~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~Km 283 (464)
|+|+.++... .... .++..+-|.|+...-. .......+++.++|. +.|...++.+|+||
T Consensus 109 ---------------ptY~la~vVD-D~~~--gIThViRg~d~~~~t~-~q~~l~~~Lg~~~P~--~~H~pll~~~~~kL 167 (240)
T cd09287 109 ---------------PTLNFAVAVD-DHLL--GVTHVLRGKDHIDNTE-KQRYIYEYFGWEYPE--TIHWGRLKIEGGKL 167 (240)
T ss_pred ---------------Eccccceeee-cccc--CCCeEEechhhhhCCH-HHHHHHHHcCCCCCc--EEeeeeecCCCCee
Confidence 3333221000 0011 3556667889442211 344555666655443 36778888899999
Q ss_pred ccccCC---------------ccCHHHHHH-hcCchhHHHHHhhcC-CCCccCCCHHHHHHHHH
Q 012397 284 SKSLGN---------------FFTIRQITE-RYHPLALRHFLISAH-YRSPLNYSVLQLDSASD 330 (464)
Q Consensus 284 Sks~gn---------------~i~~~dll~-~~~~dalR~~ll~~~-~~~~~~f~~~~~~~~~~ 330 (464)
|||++. ..++..+.+ .+.|++++-|++... -..+..++++.+....+
T Consensus 168 SKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r 231 (240)
T cd09287 168 STSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINR 231 (240)
T ss_pred ccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHH
Confidence 999842 134555554 589999999887763 35777999998876544
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >PRK01406 gltX glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=164.05 Aligned_cols=234 Identities=18% Similarity=0.195 Sum_probs=138.7
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|.|||||+|+++....+|| +..|.=++.+--||. ......+.+.+.++|++||+.++
T Consensus 10 APSPtG~lHiG~~rtal~n~l~Ar--~~~G~fiLRieDtD~----------------~R~~~~~~~~i~~~L~wlGl~~D 71 (476)
T PRK01406 10 APSPTGYLHIGGARTALFNWLFAR--HHGGKFILRIEDTDQ----------------ERSTEEAEEAILEGLKWLGLDWD 71 (476)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHHCCCCCC
Confidence 488999999999999999999999 677877777666662 12234578899999999999975
Q ss_pred CC-------CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CC----CCCCCCCcccc-cc
Q 012397 126 TY-------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SP----NYGRLSGQRLE-NN 179 (464)
Q Consensus 126 ~~-------~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~----~~g~l~~~~~~-~~ 179 (464)
+. ..++|++.+.+++..++|+++|.+| .|||..+ .+ .|..++..+.. .+
T Consensus 72 e~p~~~~~gpy~QS~r~~~y~~~~~~L~~~g~aY-----~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~ 146 (476)
T PRK01406 72 EGPDGGPYGPYRQSERLDIYKEYAEQLLEEGKAY-----YCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARL 146 (476)
T ss_pred CCCccCCCCceehhcCHHHHHHHHHHHHHcCCee-----ecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHH
Confidence 44 4688899999999999999999999 5555431 01 12223322111 11
Q ss_pred ccCCCcccCCcccCccc-ccccccccCCCC--------cccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCcccc
Q 012397 180 RAGERVAVDSRKRNPAD-FALWKAAKAGEP--------SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPH 250 (464)
Q Consensus 180 ~~g~~~~~~~~k~~~~d-~~~w~~~~~g~~--------~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h 250 (464)
.+|....+. .| .|.+ -..|...-.|.+ .+.....+|.|+|+.+.. ...+.++ ++-.+.|.||+..
T Consensus 147 ~~g~~~~iR-~k-~p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~v-VdD~~~~--ithvIrG~d~~~~- 220 (476)
T PRK01406 147 AAGEPPVIR-FK-VPDEGEVVFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVV-VDDHLMG--ITHVIRGEDHLSN- 220 (476)
T ss_pred hCCCCeeEE-EE-cCCCCceEEEEeccceEEeccccCCCcEEEecCCCccccchHH-HHHHHcC--CCEEEECchhhcC-
Confidence 122110000 00 0000 001111101111 011123456777776532 1223344 4444578893321
Q ss_pred chHHHHHHhhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHh-cCchhHHHHHhh
Q 012397 251 HENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER-YHPLALRHFLIS 311 (464)
Q Consensus 251 ~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~ 311 (464)
.-.......++|..+ +. +.|..+++ .+|+|||||+| .++++++++. |-+.|+.-|++.
T Consensus 221 t~~q~~l~~alG~~~-p~-~~H~pli~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 221 TPKQILLYEALGWEV-PV-FAHLPLILGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred HHHHHHHHHHhCCCC-Ce-EEEeeeeeCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHH
Confidence 112344455666543 33 46766754 48999999999 6899999985 456555555543
|
|
| >PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-17 Score=164.31 Aligned_cols=244 Identities=16% Similarity=0.185 Sum_probs=150.3
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|.|||||+|+++....+|| +..|.=++.+--||. .| ....+.+.+.++|++||+.+
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar--~~gG~fiLRiEDTD~------~R----------~~~e~~~~I~~~L~WlGl~w- 65 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAK--QQNEDFLIRIEDTDK------ER----------NIEGKDKEILEILNLFGISW- 65 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC------Cc----------CChHHHHHHHHHHHHcCCCC-
Confidence 488999999999999999999999 777887887777762 22 22357789999999999997
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------C----CCCCCCCCccccccccCCCccc
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------S----PNYGRLSGQRLENNRAGERVAV 187 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~----~~~g~l~~~~~~~~~~g~~~~~ 187 (464)
|...++|++.+.+.+..++|+++|.+| .|||..+ - ..|..++..+. +..|....+
T Consensus 66 De~y~QSeR~~~Y~~~a~~Li~~G~AY-----~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~--~~~g~~~~i 138 (433)
T PRK12410 66 DKLVYQSENLKFHRQMAEKLLSEKKAF-----ACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEV--LNCNKPFVV 138 (433)
T ss_pred CCCeehhccHHHHHHHHHHHHHcCCee-----eecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHH--HhcCCCeEE
Confidence 667788999999999999999999999 5555432 0 01222222111 111110000
Q ss_pred CCcccCcccccccccccCCCCc--------ccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHH---HH
Q 012397 188 DSRKRNPADFALWKAAKAGEPS--------WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENE---IA 256 (464)
Q Consensus 188 ~~~k~~~~d~~~w~~~~~g~~~--------~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~---~a 256 (464)
. .|. |.....|...-.|.+. +..-..++.|+|+.++... .... .++-.+-|.| |..+. ..
T Consensus 139 R-~k~-p~~~~~f~D~v~G~i~~~~~~~~D~Vi~R~Dg~PtY~fA~vVD-D~~m--gIThViRG~d----~l~~tp~Qi~ 209 (433)
T PRK12410 139 R-LKK-PNHTMSFTDAIKGEVSFEPDEIDSFVILRADKTPTYNFACAVD-DMLY--DISLIIRGED----HVSNTPKQIL 209 (433)
T ss_pred E-EEc-CCCceeeeeccceeEEeccccCCCeEEEcCCCCccccccchhc-hhhc--CCCEEEechh----hhhCcHHHHH
Confidence 0 000 0000011111011110 1112235678877654211 1123 3556666889 55443 34
Q ss_pred HHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHH-hcCchhHHHHHhhcCC-CCccCCCHHHHH
Q 012397 257 QSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHY-RSPLNYSVLQLD 326 (464)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~~~-~~~~~f~~~~~~ 326 (464)
+..|++.++|+. +.|...++. +|+|||||.|. +++.++.+ .|.|+|++-|++...+ ..+--|+.+++.
T Consensus 210 Ly~aLg~~~pp~-f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG~~~~~e~~~~~eli 280 (433)
T PRK12410 210 IREALGYNKEIT-YAHLPIILNEEGKKMSKRDNA-SSVKWLLEQGFLPSAIANYLILLGNKTPKEIFTLEEAI 280 (433)
T ss_pred HHHHcCCCCCCe-EEEeeeeeCCCCCeeecccCh-hhHHHHHHCCCCHHHHHHHHHHhCCCCcccccCHHHHH
Confidence 445666554443 577777765 99999999987 67888877 5999999999987532 123335555544
|
|
| >PRK12558 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8e-17 Score=163.50 Aligned_cols=246 Identities=18% Similarity=0.163 Sum_probs=150.4
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|.|||||||+++....+|| +..|.=++.|--|| . .++ .+.+.+.|.++|++|||.+
T Consensus 8 APSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD---~---~Rs----------~~~~~~~I~e~L~wLGI~~- 68 (445)
T PRK12558 8 APSPTGYLHVGNARTALLNWLYAR--KHGGKFILRIDDTD---L---ERS----------KQEYADAIAEDLKWLGINW- 68 (445)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeccCC---c---ccc----------hHHHHHHHHHHHHHcCCCC-
Confidence 488999999999999999999888 56676666666665 2 222 2568889999999999996
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CC----CCCCCCCccccc-cccCCCcc
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SP----NYGRLSGQRLEN-NRAGERVA 186 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~----~~g~l~~~~~~~-~~~g~~~~ 186 (464)
|...++|+..+.+++.+++|.++|++| .|||... .+ .|..++..+... ...|....
T Consensus 69 De~y~QSer~~~y~~~~e~L~e~G~AY-----~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~ 143 (445)
T PRK12558 69 DRTFRQSDRFDRYDEAAEKLKAAGRLY-----PCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPH 143 (445)
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCEE-----EecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCce
Confidence 667888888889999999999999999 5555442 11 122232211111 01121100
Q ss_pred cCCcccCcccccccccccCCCCc--------ccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHH---H
Q 012397 187 VDSRKRNPADFALWKAAKAGEPS--------WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENE---I 255 (464)
Q Consensus 187 ~~~~k~~~~d~~~w~~~~~g~~~--------~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~---~ 255 (464)
+. .+. +..-..|...-.|.++ +..-..++.|+|+.++... .... .++-.+-|.| |..+. .
T Consensus 144 iR-~k~-~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVD-D~~m--~ITHViRG~d----~l~~t~~q~ 214 (445)
T PRK12558 144 WR-FKL-DDEPISWDDLIRGEQSIDAASLSDPVLIRADGSYLYTLPSVVD-DIDM--GITHIIRGED----HVTNTAVQI 214 (445)
T ss_pred EE-Eec-CCCceEEEEEeeeEeecccccCCCeEEEecCCCccccccceec-cccC--CCCEEEechh----hhhCCHHHH
Confidence 00 000 0000112111111111 0111235667776553210 1112 3556666889 54443 3
Q ss_pred HHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHH-hcCchhHHHHHhhc--CCCCccCCCHHHHHH
Q 012397 256 AQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA--HYRSPLNYSVLQLDS 327 (464)
Q Consensus 256 a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~--~~~~~~~f~~~~~~~ 327 (464)
.+..|++.++| .+.|.+.++. +|+|+|||.|. +++.++.+ .|.|+|++-|++.. +...+.-|+.+++.+
T Consensus 215 ~l~~alg~~~P--~f~H~pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~eli~ 287 (445)
T PRK12558 215 QIFEALGAKPP--VFAHLSLLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAE 287 (445)
T ss_pred HHHHHhCCCCC--eEEEcccccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHHHHHH
Confidence 44455654443 3578888877 88999999987 68888887 59999999999874 333344478887764
|
|
| >PRK14895 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=155.99 Aligned_cols=245 Identities=16% Similarity=0.091 Sum_probs=151.2
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|.|||||+|+++....+|| +..|.=++.+--|| ..| ....+.+.+.++|++||+.++
T Consensus 10 APSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD------~~R----------~~~~~~~~i~~~L~WLGl~wD 71 (513)
T PRK14895 10 APSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTD------KER----------STKEAVEAIFSGLKWLGLDWN 71 (513)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCC------ccc----------cChHHHHHHHHHHHHcCCCCC
Confidence 488999999999999999999999 66777777776665 122 234578899999999999985
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-----------C---CC----CCCCCCccccccccCCCccc
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-----------S---PN----YGRLSGQRLENNRAGERVAV 187 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-----------~---~~----~g~l~~~~~~~~~~g~~~~~ 187 (464)
....++|++.+.+++..++|+++|.+| .|||... | +. |..++... ...|....+
T Consensus 72 e~py~QSeR~~~Y~~~a~~Li~~G~AY-----~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~---~~~~~~~~i 143 (513)
T PRK14895 72 GEVIFQSKRNNLYKEAALKLLQNGKAY-----YCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSI---YPTDIKPVI 143 (513)
T ss_pred CCceeEeCcHHHHHHHHHHHHHcCCeE-----EecCcHHHHHHHHHhhhccCCCCCCChhhcccChhh---hhcCCCeeE
Confidence 566788999999999999999999999 5666542 0 11 11111110 000100000
Q ss_pred CCcccCcccccccccccCCCCcc--------cCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHH---HH
Q 012397 188 DSRKRNPADFALWKAAKAGEPSW--------DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENE---IA 256 (464)
Q Consensus 188 ~~~k~~~~d~~~w~~~~~g~~~~--------~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~---~a 256 (464)
. .|.....-..|...-.|.++. ..-..+|.|+|+.++.. -....+ ++-.+.|.| |..+. ..
T Consensus 144 R-~k~p~~~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vV-DD~~m~--ithVIRG~d----~~~~t~~q~~ 215 (513)
T PRK14895 144 R-LKTPREGSITIHDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVV-DDHDMG--ITHIIRGDD----HLTNAARQLA 215 (513)
T ss_pred E-EEcCCCCceEEEeecccceecccccCCCcEEEEeCCCcchhhHHHH-HHHhcC--CCEEEECch----HhhhHHHHHH
Confidence 0 000000001121111122111 11234566777765321 122233 444558899 55443 44
Q ss_pred HHhhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHH-hcCchhHHHHHhhc--CCCCccCCCHHHHHH
Q 012397 257 QSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA--HYRSPLNYSVLQLDS 327 (464)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~--~~~~~~~f~~~~~~~ 327 (464)
...+++..+ + .+.|..+|+ .+|+|||||.|. +.+.++.+ .|-|+|++-|++.- +.+..-.|+.+++.+
T Consensus 216 l~~aLG~~~-p-~~~H~plv~~~~g~KLSKR~g~-~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~ 287 (513)
T PRK14895 216 IYQAFGYAV-P-SMTHIPLIHGADGAKLSKRHGA-LGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAID 287 (513)
T ss_pred HHHHcCCCC-C-eEEEEEeEEcCCCCccccccCc-hhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHh
Confidence 445566443 3 357888988 599999999998 57777776 58999999999853 233334577776653
|
|
| >cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.6e-16 Score=143.32 Aligned_cols=176 Identities=19% Similarity=0.158 Sum_probs=123.1
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|+||+||+|++++...+|| +..|.=++.+.-+|. .| ....+.+.|.++|++||+.++
T Consensus 7 APsPtG~lHlG~~r~al~n~l~Ar--~~~G~~iLRieDtD~------~R----------~~~~~~~~I~~dL~wlGl~wd 68 (230)
T cd00418 7 APSPTGYLHIGHARTALFNFAFAR--KYGGKFILRIEDTDP------ER----------SRPEYVESILEDLKWLGLDWD 68 (230)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCeEEEEeCcCCC------CC----------CChHHHHHHHHHHHHcCCCCC
Confidence 588999999999999999999999 667777777766662 11 223578899999999999975
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccC
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKA 205 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~ 205 (464)
....++|++.+.+++..++|+++| +-.-|...++ ++ |
T Consensus 69 ~~~~~QS~r~~~y~~~~~~L~~~g------g~p~Y~la~v----------vD------------------D--------- 105 (230)
T cd00418 69 EGPYRQSDRFDLYRAYAEELIKKG------GYPLYNFVHP----------VD------------------D--------- 105 (230)
T ss_pred CCeeehhcCHHHHHHHHHHHHHcC------CCcccccccc----------cc------------------c---------
Confidence 447788999999999999999999 0011111000 00 0
Q ss_pred CCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccc
Q 012397 206 GEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMS 284 (464)
Q Consensus 206 g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmS 284 (464)
... .++..+-|+|++.... ....+..+++.++| . +.|...++. +|+|||
T Consensus 106 -------------------------~~~--gIThViRG~D~l~st~-~q~~l~~~Lg~~~P-~-~~H~pll~~~~g~KLS 155 (230)
T cd00418 106 -------------------------ALM--GITHVLRGEDHLDNTP-IQDWLYEALGWEPP-R-FYHFPRLLLEDGTKLS 155 (230)
T ss_pred -------------------------ccc--CCCEEEECHhhhhchH-HHHHHHHHcCCCCC-e-EEEeeeeeCCCCCCcc
Confidence 001 2556666888432222 23344455555433 3 477777776 779999
Q ss_pred cccCCccCHHHHHH-hcCchhHHHHHhhcC
Q 012397 285 KSLGNFFTIRQITE-RYHPLALRHFLISAH 313 (464)
Q Consensus 285 ks~gn~i~~~dll~-~~~~dalR~~ll~~~ 313 (464)
||.|+ +++.++.+ .+.|++++-|++...
T Consensus 156 Kr~~~-~~i~~~r~~G~~p~ai~~~l~~lG 184 (230)
T cd00418 156 KRKLN-TTLRALRRRGYLPEALRNYLALIG 184 (230)
T ss_pred CcCCC-cCHHHHHHCCCcHHHHHHHHHHcC
Confidence 99999 68888776 499999999988643
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind |
| >PLN02627 glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.6e-16 Score=157.93 Aligned_cols=254 Identities=17% Similarity=0.135 Sum_probs=154.5
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++|++=+ .|+|+|.|||||+|+++....+|| +..|.=++.+--||- . .....+.+.|.++|
T Consensus 44 ~~vr~RF-APSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~------~----------R~~~e~~~~I~~~L 104 (535)
T PLN02627 44 GPVRVRF-APSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDL------A----------RSTKESEEAVLRDL 104 (535)
T ss_pred CceEEEe-CCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC------C----------CCChHHHHHHHHHH
Confidence 3444434 489999999999999999999999 777877777777661 1 22345788999999
Q ss_pred HhcCCCCCCC--------CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------C-C----CCCCC
Q 012397 118 ADLQCLPPTY--------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------S-P----NYGRL 171 (464)
Q Consensus 118 ~~lgi~~~~~--------~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~-~----~~g~l 171 (464)
++|||.+++. ..++|++.+.+.+..++|+++|.+| .|||..+ + + .|..+
T Consensus 105 ~WLGl~wDegp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY-----~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l 179 (535)
T PLN02627 105 KWLGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVY-----PCFCTDEELEAMKEEAELKKLPPRYTGKWATA 179 (535)
T ss_pred HHcCCCCCcCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCee-----eccCChHHHHHHHHHHHhcCCCcCCCCccccC
Confidence 9999997432 2578899999999999999999999 5666542 1 1 13333
Q ss_pred CCccccc-cccCCCcccCCcccCcc-cccccccccCCCCc--------ccCCCCCCCCchhhHHHHHHHhhcCCCeeEEE
Q 012397 172 SGQRLEN-NRAGERVAVDSRKRNPA-DFALWKAAKAGEPS--------WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHG 241 (464)
Q Consensus 172 ~~~~~~~-~~~g~~~~~~~~k~~~~-d~~~w~~~~~g~~~--------~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~ 241 (464)
+..+..+ ...|....+. .+ .|. .-..|...-.|..+ +..-..++.|+|+.++... .... .++-.+
T Consensus 180 ~~ee~~~~~~~g~~~~iR-~k-~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~DG~PtY~fA~vVD-D~~m--gITHVi 254 (535)
T PLN02627 180 SDEEVQAELAKGTPYTYR-FR-VPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSNGQPVYNFCVAVD-DATM--GITHVI 254 (535)
T ss_pred CHHHHHHHHhCCCCceEE-EE-cCCCCceEEEeeeeeeeeeccccCCCeEEEecCCCccccccceec-cccc--CCcEEE
Confidence 3222111 1112110000 00 000 00011111011110 1111235677777654211 1112 355666
Q ss_pred ecccCccccchHHH---HHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHH-hcCchhHHHHHhhcCCC-
Q 012397 242 GGIDLIFPHHENEI---AQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYR- 315 (464)
Q Consensus 242 ~G~D~~~~h~~~~~---a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~~~~- 315 (464)
-|.| |..+.+ .+..|++..+| .+.|...++. +|+|||||.|. +++.++.+ .|.|+|++-|++...+.
T Consensus 255 RG~D----~l~nTpkQi~ly~aLg~~~P--~f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~nyla~LGws~ 327 (535)
T PLN02627 255 RAEE----HLPNTLRQALIYKALGFPMP--RFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPDAMVNYLALLGWND 327 (535)
T ss_pred echh----hhcChHHHHHHHHHcCCCCC--eEEEccceeCCCCCccccccCC-ccHHHHHHCCCCHHHHHHHHHHhCCCC
Confidence 6889 555444 34455665554 3578888876 88899999877 68888877 59999999999865432
Q ss_pred --CccCCCHHHHHH
Q 012397 316 --SPLNYSVLQLDS 327 (464)
Q Consensus 316 --~~~~f~~~~~~~ 327 (464)
.+--|+.+++.+
T Consensus 328 ~~~~e~~~~~eli~ 341 (535)
T PLN02627 328 GTENEIFTLEELVE 341 (535)
T ss_pred CCCCCcCCHHHHHH
Confidence 234577776654
|
|
| >PLN03233 putative glutamate-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.4e-15 Score=151.96 Aligned_cols=253 Identities=15% Similarity=0.127 Sum_probs=156.7
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|+|.|||||||++++...+|| ...|.=++.+.-|| . ..-..+|.+.|.++|++||+.+
T Consensus 17 APsPtG~LHiGharaAlln~l~Ar--~~gG~~iLRiEDTD---p-------------~R~~~e~~~~I~~dL~WLGl~w- 77 (523)
T PLN03233 17 PPEPSGYLHIGHAKAALLNDYYAR--RYKGRLILRFDDTN---P-------------SKEKAEFEESIIEDLGKIEIKP- 77 (523)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEECCCC---C-------------CccchHHHHHHHHHHHHhCCCC-
Confidence 589999999999999999999999 56777777666665 2 2223458899999999999996
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC----------CCCCCCCCcc----ccccccC-----CCc-
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS----------PNYGRLSGQR----LENNRAG-----ERV- 185 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~----------~~~g~l~~~~----~~~~~~g-----~~~- 185 (464)
|....+|++.+.+.+...+|+++|.+| +++|..+. ..|..++..+ ..++..| ..+
T Consensus 78 D~~~~qSdr~~~y~~~a~~Li~~G~AY-----~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~l 152 (523)
T PLN03233 78 DSVSFTSDYFEPIRCYAIILIEEGLAY-----MDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCL 152 (523)
T ss_pred CCCccccccHHHHHHHHHHHHHcCCeE-----ecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEE
Confidence 677888999999999999999999999 45554320 0132222211 1111112 110
Q ss_pred --ccCC--cccCcccccccccccCCCCc-c-cCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHh
Q 012397 186 --AVDS--RKRNPADFALWKAAKAGEPS-W-DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC 259 (464)
Q Consensus 186 --~~~~--~k~~~~d~~~w~~~~~g~~~-~-~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~ 259 (464)
..+. ....-.|+.+.+.. +.+- + -..| .+.|+|+.++.. -.... .++-.+-|.|+...- ..+..+..
T Consensus 153 R~K~d~~~~n~~~~D~Vi~R~d--~~~h~~~Gd~~-~~~PtY~fA~~V-DD~l~--gITHviRg~E~~~~t-~~q~~l~~ 225 (523)
T PLN03233 153 RAKIDMQSDNGTLRDPVLFRQN--TTPHHRSGTAY-KAYPTYDLACPI-VDSIE--GVTHALRTTEYDDRD-AQFFWIQK 225 (523)
T ss_pred EEeCcccCCCCCCcCCEEEEEc--CCcccccCCcc-cceeccCCceee-ecccc--CCCeEEechhhhcCC-HHHHHHHH
Confidence 0010 00111455555432 1110 0 0122 345666544310 01112 244555577844222 23444455
Q ss_pred hccCCCCccEEEEeeeeeeCCccccccc------CCcc---------CHHHHHH-hcCchhHHHHHhhc-CCCCccCCCH
Q 012397 260 AACQDSNVSYWMHNGHVTNNNEKMSKSL------GNFF---------TIRQITE-RYHPLALRHFLISA-HYRSPLNYSV 322 (464)
Q Consensus 260 a~~~~~~~~~~~~~~~v~~~G~KmSks~------gn~i---------~~~dll~-~~~~dalR~~ll~~-~~~~~~~f~~ 322 (464)
+++...|. + .|.+.+.+.|.|||||+ .+.| ++..+.+ .|.|+|||-|++.. .-..+..+++
T Consensus 226 aLg~~~P~-~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~ 303 (523)
T PLN03233 226 ALGLRRPR-I-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDW 303 (523)
T ss_pred HhCCCCCe-e-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecH
Confidence 66654433 3 44566777999999997 3334 4777776 59999999999987 4467889999
Q ss_pred HHHHHHHHH
Q 012397 323 LQLDSASDA 331 (464)
Q Consensus 323 ~~~~~~~~~ 331 (464)
+.+.+..+.
T Consensus 304 ~~l~~~nR~ 312 (523)
T PLN03233 304 AKFWAENKK 312 (523)
T ss_pred HHHHHHHHH
Confidence 999877653
|
|
| >PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=145.11 Aligned_cols=219 Identities=16% Similarity=0.086 Sum_probs=134.2
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|+|||||+|++++...+|| ...|.=++.+--+|. .| ...++.+.|.++|++||+.++
T Consensus 11 APSPTG~LHlG~~rtAL~n~l~Ar--~~~G~~iLRiEDtD~------~R----------~~~~~~~~I~~dL~wlGl~wD 72 (299)
T PRK05710 11 APSPSGPLHFGSLVAALGSWLDAR--AHGGRWLLRIEDIDP------PR----------EVPGAADAILADLEWLGLHWD 72 (299)
T ss_pred CcCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEECcCCC------Cc----------cchHHHHHHHHHHHHCCCCCC
Confidence 588999999999999999999999 556766666665552 11 223577899999999999975
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC------------C----CCCCCCCccccccccCCCcccCC
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------P----NYGRLSGQRLENNRAGERVAVDS 189 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~------------~----~~g~l~~~~~~~~~~g~~~~~~~ 189 (464)
....++|++.+.+++..++|+++|.+|. |||.... + .|..++..+.... --|+..+.
T Consensus 73 e~~~~QS~r~~~Y~~~~~~L~~~G~aY~-----C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~--~iRlk~~~ 145 (299)
T PRK05710 73 GPVLYQSQRHDAYRAALDRLRAQGLVYP-----CFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPP--AWRLRVPD 145 (299)
T ss_pred CCceEeeccHHHHHHHHHHHHHCCCcee-----cCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCc--eEEEEcCC
Confidence 4567789999999999999999999993 4443210 0 1211211100000 00000000
Q ss_pred ----------------cccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchH
Q 012397 190 ----------------RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHEN 253 (464)
Q Consensus 190 ----------------~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~ 253 (464)
....-.||.+++ .++.|+|+.++... .... .++-.+-|.|++..-. .
T Consensus 146 ~~~~~~D~~~G~~~~~~~~~~~D~Vi~R-------------~dg~ptY~lA~vVD-D~~~--gIThVvRG~D~l~~t~-~ 208 (299)
T PRK05710 146 AVIAFDDRLQGRQHQDLALAVGDFVLRR-------------ADGLFAYQLAVVVD-DALQ--GVTHVVRGADLLDSTP-R 208 (299)
T ss_pred CceEEEEecceeEeeCCCCCCCCEEEEe-------------cCCCccccchhHHh-cccC--CCCEEEeChhhhhcCH-H
Confidence 000112333333 35677777665321 1123 3556666889443222 2
Q ss_pred HHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 254 EIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 254 ~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
...+..+++.++| . +.|.+.++. +|+|||||.|. ..+++ +.+.++ +..++...
T Consensus 209 Q~~l~~aLg~~~P-~-y~H~pll~~~~g~kLSKr~~~-~~i~~--~g~~p~-l~~~l~~l 262 (299)
T PRK05710 209 QIYLQQLLGLPTP-R-YLHLPLVLNADGQKLSKQNGA-PALDA--AGPLPV-LAAALRFL 262 (299)
T ss_pred HHHHHHHcCCCCC-e-EEEeecccCCCCCcccccCCc-cchhh--cCcCHH-HHHHHHHc
Confidence 3444556665543 3 477777754 99999999887 45666 677777 66666554
|
|
| >TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-15 Score=141.71 Aligned_cols=240 Identities=15% Similarity=0.035 Sum_probs=138.1
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|.|||||+|++++...+|| +..|.=++.+--||. .| ....+.+.|.++|++||+.++
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~------~R----------~~~~~~~~I~~dL~wLGl~wD 67 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDP------PR----------EVPGAADDILRTLEAYGLHWD 67 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC------CC----------CChHHHHHHHHHHHHcCCCCC
Confidence 488999999999999999999999 667887777777762 11 123477889999999999974
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CC-CCCCCCCccccccccCCCcccCCccc
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SP-NYGRLSGQRLENNRAGERVAVDSRKR 192 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~-~~g~l~~~~~~~~~~g~~~~~~~~k~ 192 (464)
....++|++.+.+++..++|+++|.+| .|||..+ |+ .|.. +. . ...|....+. .+.
T Consensus 68 e~~~~QS~r~~~Y~~~~~~L~~~G~aY-----~C~Ct~eel~~~~~~~~~~y~~~cr~-~~--~--~~~~~~~~~R-lk~ 136 (272)
T TIGR03838 68 GEVVYQSQRHALYQAALDRLLAAGLAY-----PCQCTRKEIAAAAGDGGGIYPGTCRN-GL--L--GRPARPAAWR-LRV 136 (272)
T ss_pred CCeeeeeCCHHHHHHHHHHHHHcCCEE-----ecCCCHHHHHHHhcCCCCCCCchhhc-cc--c--cccCCCceEE-Eec
Confidence 444588999999999999999999999 4444321 11 0111 00 0 0001100000 000
Q ss_pred CcccccccccccCCCC---------cccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccC
Q 012397 193 NPADFALWKAAKAGEP---------SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ 263 (464)
Q Consensus 193 ~~~d~~~w~~~~~g~~---------~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~ 263 (464)
...+ ..|...-.|.. .+.....++.|+|+.++... .... .++-.+-|.|++..-. ....+..+++.
T Consensus 137 ~~~~-~~~~D~~~g~~~~~~~~~~~D~vi~R~Dg~ptY~fA~vVD-D~~~--gIThViRG~D~l~~t~-~q~~l~~aLg~ 211 (272)
T TIGR03838 137 PDGV-IAFDDRLQGPQQQDLAAAVGDFVLRRADGLFAYQLAVVVD-DAAQ--GITHVVRGADLLDSTP-RQIYLQRLLGL 211 (272)
T ss_pred CCCC-ceEEEeeeeEEEecCcccCCCEEEEecCCCccccChhhhh-cccC--CCCEEEeCHhhhhccH-HHHHHHHHhCC
Confidence 0000 00100000000 01112245678877664321 1223 3556666889432211 23444556665
Q ss_pred CCCccEEEEeeeee-eCCcccccccCCccCHHHHHHhcCchhHHHHHhhc--C-CCCccCCCHHHH
Q 012397 264 DSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA--H-YRSPLNYSVLQL 325 (464)
Q Consensus 264 ~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~--~-~~~~~~f~~~~~ 325 (464)
++| .+.|.+.++ .+|+|+|||+|- ..+++. -.+.++..++... . ....-.|+.+++
T Consensus 212 ~~P--~y~H~pll~~~~g~kLSKR~~~-~~i~~~---~~~~~~~~~l~~lG~~~~~~~~~~~~~~~ 271 (272)
T TIGR03838 212 PPP--RYLHLPLVVNADGEKLSKQNGA-PALDLS---HPLPALLAALRFLGLPPPPELAAASPAEL 271 (272)
T ss_pred CCC--eEEechhhhCCCCCeeeccCCc-cchhcC---CcHHHHHHHHHHcCCCCCcccccCCHHHh
Confidence 554 357777775 499999999887 344442 2344666665543 2 223346666654
|
This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. |
| >COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-15 Score=149.90 Aligned_cols=253 Identities=17% Similarity=0.094 Sum_probs=146.4
Q ss_pred eCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 012397 45 CGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLP 124 (464)
Q Consensus 45 ~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 124 (464)
-.|+|+|+|||||||+++....+|| ...|.=++.+--||- +.-...+.+.|.++|++||+.+
T Consensus 14 FAPsPtG~LHiG~artAl~N~~~Ar--~~~G~fiLRiEDTD~----------------~R~~~e~~~~I~~~L~WLGl~w 75 (472)
T COG0008 14 FAPSPTGYLHIGHARTALLNYLYAR--KYGGKFILRIEDTDP----------------ERETPEAEDAILEDLEWLGLDW 75 (472)
T ss_pred ECcCCCCccchHHHHHHHHHHHHHH--HhCCEEEEEecCCCC----------------CCCCHHHHHHHHHHHHhcCCCC
Confidence 3689999999999999999999999 778888888777762 1223357789999999999997
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-----------------CCC--CCCCCCccc-cccc-cCC
Q 012397 125 PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-----------------SPN--YGRLSGQRL-ENNR-AGE 183 (464)
Q Consensus 125 ~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-----------------~~~--~g~l~~~~~-~~~~-~g~ 183 (464)
+....++|++.+.+.+...+|+++|.+| .|||..+ |+. |-.++..+. .... .+.
T Consensus 76 de~~~~QS~r~~~Y~~~~~~Li~~G~AY-----~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~ 150 (472)
T COG0008 76 DEGPYYQSERFDIYYEYAEKLIEKGKAY-----VCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGP 150 (472)
T ss_pred CCceeehhhhHHHHHHHHHHHHHCCCeE-----EecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCC
Confidence 5447899999999999999999999999 6666551 110 111111000 0000 011
Q ss_pred C---cccCCcccCc--ccccccccccCCCCcc-cCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHH
Q 012397 184 R---VAVDSRKRNP--ADFALWKAAKAGEPSW-DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (464)
Q Consensus 184 ~---~~~~~~k~~~--~d~~~w~~~~~g~~~~-~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~ 257 (464)
. +..+....++ .|...-+-.-...... ...-..+.|+|+.++. .-.+..| ++-.+-|.|++..-. ....+
T Consensus 151 ~viR~k~~~~~~~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favv-vDD~~mg--ITHviRG~d~~~nt~-~q~~l 226 (472)
T COG0008 151 AVVRLKIPMAHPGPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVV-VDDHLMG--ITHVLRGEDHLDNTP-RQIWL 226 (472)
T ss_pred eEEEEeCCCCCCCCccccceeeeEecCccCCcceeecCCCCcccceeee-echhhcC--CceEEechhhccCCH-HHHHH
Confidence 0 0011000111 1111000000000001 1112234566654321 0011233 445555889432211 23444
Q ss_pred HhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHH-HhcCchhHHHHHhhc----CCCCccCCCHHHHHH
Q 012397 258 SCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQIT-ERYHPLALRHFLISA----HYRSPLNYSVLQLDS 327 (464)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll-~~~~~dalR~~ll~~----~~~~~~~f~~~~~~~ 327 (464)
..+++.++|. +.|.+.++. +|+|||||+| .+...+.. ..+.+.+++-++... ++...-.|+.+.+..
T Consensus 227 ~~~lg~~~P~--~~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~ 299 (472)
T COG0008 227 YEALGWPPPV--YAHLPLLLNEDGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIK 299 (472)
T ss_pred HHHcCCCCCc--EEEeeeeecCCCCeecCccC-ccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHh
Confidence 5556655543 478888887 6779999999 67777644 468888888777542 224444566555543
|
|
| >cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-14 Score=133.41 Aligned_cols=206 Identities=15% Similarity=0.099 Sum_probs=138.7
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|+||+||+|++++...+|| +..|.=++.+.-+| . .+ ....+.+.+.++|++||+.+
T Consensus 7 APsPtG~lHlG~~~~al~~~l~Ar--~~~G~~iLRieDtD---~---~R----------~~~~~~~~I~~dL~wlGl~w- 67 (238)
T cd00807 7 PPEPNGYLHIGHAKAILLNFGYAK--KYGGRCNLRFDDTN---P---EK----------EEEEYVDSIKEDVKWLGIKP- 67 (238)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCC---C---cc----------cchHHHHHHHHHHHHcCCCC-
Confidence 588999999999999999999999 56776666665555 2 12 23457889999999999997
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccC
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKA 205 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~ 205 (464)
|....+|++.+.+++...+|+++|.+|. . +. .|. ++.+
T Consensus 68 D~~~~QS~r~~~Y~~~~~~L~~~g~aY~---------~----~~-----------~~~------------~~~i------ 105 (238)
T cd00807 68 YKVTYASDYFDQLYEYAEQLIKKGKAYV---------H----HR-----------TGD------------KWCI------ 105 (238)
T ss_pred CCceecccCHHHHHHHHHHHHHcCCeec---------C----CC-----------CCC------------CEEE------
Confidence 5667889999999999999999999996 0 00 010 1111
Q ss_pred CCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCccccc
Q 012397 206 GEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSK 285 (464)
Q Consensus 206 g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSk 285 (464)
.|+|+.++... .... .++-.+-|.|++..-. .......+++.++|. + ++.+++..+|+|+||
T Consensus 106 ------------~ptY~lA~vVD-D~~~--gIThVvRG~D~l~~t~-~Q~~l~~aLg~~~P~-~-~~~~hln~~g~kLSK 167 (238)
T cd00807 106 ------------YPTYDFAHPIV-DSIE--GITHSLCTLEFEDRRP-SYYWLCDALRLYRPH-Q-WEFSRLNLTYTVMSK 167 (238)
T ss_pred ------------EeccccceEee-cccc--CCCeEEechhhhcCCH-HHHHHHHHcCCCCCc-e-eEEEEECCCCCCccC
Confidence 13332221000 0112 3556666889443222 234445566665544 2 345677789999999
Q ss_pred ccCC------cc---------CHHHHHH-hcCchhHHHHHhhc-CCCCccCCCHHHHHHHHH
Q 012397 286 SLGN------FF---------TIRQITE-RYHPLALRHFLISA-HYRSPLNYSVLQLDSASD 330 (464)
Q Consensus 286 s~gn------~i---------~~~dll~-~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~ 330 (464)
|.+. .+ ++..+.. .+.|+|++-|++.. --..+..|+++.+....+
T Consensus 168 R~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr 229 (238)
T cd00807 168 RKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVR 229 (238)
T ss_pred cCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 9853 12 2344433 58899999999986 446889999999876544
|
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >PRK05347 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-14 Score=145.93 Aligned_cols=257 Identities=17% Similarity=0.060 Sum_probs=155.6
Q ss_pred eCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 012397 45 CGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLP 124 (464)
Q Consensus 45 ~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 124 (464)
-+|+|+|.|||||||++++...+|| +..|.=++.+.-|| . ......|.+.|.++|++||+.+
T Consensus 34 FaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLRieDTd---~-------------~r~~~e~~~~I~~dL~wLGi~~ 95 (554)
T PRK05347 34 FPPEPNGYLHIGHAKSICLNFGLAQ--DYGGKCNLRFDDTN---P-------------EKEDQEYVDSIKEDVRWLGFDW 95 (554)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEECCCC---C-------------CcCChHHHHHHHHHHHHcCCCC
Confidence 3699999999999999999999999 56777666666655 2 1223458899999999999997
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CCCCCCCCCccc----cccccCCC--
Q 012397 125 PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLSGQRL----ENNRAGER-- 184 (464)
Q Consensus 125 ~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~~~g~l~~~~~----~~~~~g~~-- 184 (464)
++....+|++.+.+.+...+|+++|.+| +++|... ...|...+..+- +++.+|..
T Consensus 96 d~~~~~qS~r~~~~y~~a~~Li~~G~AY-----~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~ 170 (554)
T PRK05347 96 SGELRYASDYFDQLYEYAVELIKKGKAY-----VDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPE 170 (554)
T ss_pred CCCceeeecCHHHHHHHHHHHHHcCCEe-----eCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCC
Confidence 6677788899998888999999999999 5555431 111222222111 12233321
Q ss_pred ---c---ccCCcccCc--ccccccccccCCCCcccC-CCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHH
Q 012397 185 ---V---AVDSRKRNP--ADFALWKAAKAGEPSWDS-PWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255 (464)
Q Consensus 185 ---~---~~~~~k~~~--~d~~~w~~~~~g~~~~~~-~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~ 255 (464)
+ ..+....++ +|+.+.+....-.+ +.. .| ...|+|+.++.. -....| ++-..-|.|+.. +...+.
T Consensus 171 g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~-r~G~k~-~iyPtYdfA~~v-dD~l~g--ITHvlRg~E~~~-~t~~~~ 244 (554)
T PRK05347 171 GSAVLRAKIDMASPNINMRDPVLYRIRHAHHH-RTGDKW-CIYPMYDFAHCI-SDAIEG--ITHSLCTLEFED-HRPLYD 244 (554)
T ss_pred CcEEEEEEeeccCCCCCCCCCEEEEecCCCCC-ccCCce-eeecCcCcccee-eccccC--CceEEecccccc-ChHHHH
Confidence 1 000001111 35544443210000 000 11 125666544311 011122 333344566321 122334
Q ss_pred HHHhhccCCCCccEEEEeeeeeeCCcccccccCC-------c--------cCHHHHHH-hcCchhHHHHHhhcC-CCCcc
Q 012397 256 AQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGN-------F--------FTIRQITE-RYHPLALRHFLISAH-YRSPL 318 (464)
Q Consensus 256 a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn-------~--------i~~~dll~-~~~~dalR~~ll~~~-~~~~~ 318 (464)
.+..+++....+.. .+.+++.++|.|||||++. + .++..+.+ .|.|+|||-|++... -..+.
T Consensus 245 ~i~~alg~~~~P~~-~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~ 323 (554)
T PRK05347 245 WVLDNLPIPPHPRQ-YEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDS 323 (554)
T ss_pred HHHHHcCCCCCCce-EEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCC
Confidence 44556654322333 3457888899999999965 2 26777776 599999999999873 35777
Q ss_pred CCCHHHHHHHHHH
Q 012397 319 NYSVLQLDSASDA 331 (464)
Q Consensus 319 ~f~~~~~~~~~~~ 331 (464)
.++++.+.+..+.
T Consensus 324 ~i~~~~L~~~nRk 336 (554)
T PRK05347 324 VIDMSMLESCIRE 336 (554)
T ss_pred eecHHHHHHHHHH
Confidence 9999999877653
|
|
| >PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-14 Score=139.98 Aligned_cols=225 Identities=19% Similarity=0.201 Sum_probs=130.1
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|+|+|||||+|++++...+|| +..|.=++.+--+|. ......+.+.|.++|++||+.++
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~i~~~L~wlGl~~D 68 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDP----------------ERCRPEFYDAILEDLRWLGLEWD 68 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSST----------------TTCHHHHHHHHHHHHHHHT---S
T ss_pred CCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecccccc----------------ccchhhHHHHHHhheeEEEEecC
Confidence 488999999999999999999999 778887777776662 11234577889999999999975
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------CCC-------CCCCCCccccc-cccCCC
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPN-------YGRLSGQRLEN-NRAGER 184 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~~~-------~g~l~~~~~~~-~~~g~~ 184 (464)
.....+|++.+.+++..++|+++|.+| .|||..+ |+. |-.+...+... ...|..
T Consensus 69 ~~~~~QS~r~~~Y~~~~~~L~~~g~aY-----~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~ 143 (314)
T PF00749_consen 69 YGPYYQSDRLEIYQEAAEKLIDKGKAY-----PCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGP 143 (314)
T ss_dssp TCEEEGGGGHHHHHHHHHHHHHTTSEE-----EEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTS
T ss_pred CeEEeHHHHHHHHHHHHHHHhhcCCCc-----cccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCc
Confidence 567788999999999999999999999 6676541 111 11111101100 001110
Q ss_pred ----cccCCc----------------ccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecc
Q 012397 185 ----VAVDSR----------------KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (464)
Q Consensus 185 ----~~~~~~----------------k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~ 244 (464)
+..+.. .....|+.+++ .++.|+|+.++... ....+ ++-.+-|.
T Consensus 144 ~~iRlk~~~~~~~~~~D~v~g~i~~~~~~~~D~vi~r-------------~dg~ptY~fA~vVD-D~~~g--ITHViRG~ 207 (314)
T PF00749_consen 144 AVIRLKVPMESPIAFRDLVRGRIIFDPSDLGDFVIRR-------------SDGYPTYHFAVVVD-DHLMG--ITHVIRGE 207 (314)
T ss_dssp EEEEE-SSSTCCEEEEETTTEEEEEEGGGSBTEEEES-------------TTSEB-HHHHHHHH-HHHTT---SEEEEEG
T ss_pred eeeeeecccccccccccCcceeeeeccccCCchhccc-------------cccCcccccceeec-ccccc--cCeEEEcc
Confidence 000000 00001222222 35678887765321 12233 56666788
Q ss_pred cCccccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCcc-CHHHHHH-hcCchhHHHHHhhc
Q 012397 245 DLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFF-TIRQITE-RYHPLALRHFLISA 312 (464)
Q Consensus 245 D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i-~~~dll~-~~~~dalR~~ll~~ 312 (464)
|++..-. ....+..+++..+|. +.|...++. +|+|+|||++... ...++.+ .+.++++--++...
T Consensus 208 D~l~~t~-~Q~~L~~~Lg~~~P~--~~H~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~l 275 (314)
T PF00749_consen 208 DLLSSTP-RQILLYEALGWPPPP--YAHLPLILNEDGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARL 275 (314)
T ss_dssp GGTTCHH-HHHHHHHHCTSSS-E--EEEEEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHT
T ss_pred ccccccH-HHHHHHHHhCCCCcc--eEeeeeeecCCCcEechhhccccccccccccCCCCHHHHHHHHHHh
Confidence 9443221 334445566655433 466555444 8999999998842 2555544 46777777676654
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A .... |
| >PTZ00402 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.6e-14 Score=145.45 Aligned_cols=256 Identities=14% Similarity=0.069 Sum_probs=152.8
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|+|+|||||||++++...+|| ...|.=++.+.-|| . .....+|.+.|.++|++||+.++
T Consensus 58 APsPtGyLHIGharaAllN~l~Ar--~~gG~~iLRiEDTD---p-------------~R~~~e~~d~IleDL~WLGl~wD 119 (601)
T PTZ00402 58 PPEASGFLHIGHAKAALINSMLAD--KYKGKLVFRFDDTN---P-------------SKEKEHFEQAILDDLATLGVSWD 119 (601)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEEcCCC---C-------------cccCHHHHHHHHHHHHHCCCCCC
Confidence 599999999999999999999999 66776666665555 2 22234588999999999999974
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC----------CCCCCCCCCcc----ccccccCC-----Ccc
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SPNYGRLSGQR----LENNRAGE-----RVA 186 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~----------~~~~g~l~~~~----~~~~~~g~-----~~~ 186 (464)
.....+|++.+.+.+...+|+++|++| +++|..+ -..|..++..+ .+.+..|. .+.
T Consensus 120 e~~~~QSdr~d~y~e~a~~Li~~G~AY-----~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~l 194 (601)
T PTZ00402 120 VGPTYSSDYMDLMYEKAEELIKKGLAY-----CDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCL 194 (601)
T ss_pred CceeeccccHHHHHHHHHHHHHcCCEE-----EecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEE
Confidence 446788999999999999999999999 4444321 11232222111 01111111 000
Q ss_pred ---cC--CcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhc
Q 012397 187 ---VD--SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA 261 (464)
Q Consensus 187 ---~~--~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~ 261 (464)
.+ ....+-.|+.+++....-.+ +..+--.+.|+|+.++.. -.... .++-.+-|.|+... ...+..+..++
T Consensus 195 R~kid~~~~n~~~rD~Vl~R~~~~~h~-rtGdk~dgyPtYdfA~vV-DD~l~--gITHvlRg~E~l~~-tp~q~~L~~aL 269 (601)
T PTZ00402 195 RAKISVDNENKAMRDPVIYRVNLTPHA-RQGTKYKAYPTYDFCCPI-IDSVE--GVTHALRTNEYHDR-NDQYYWFCDAL 269 (601)
T ss_pred EEecccCCCCCCccCCEEEEEcCCccc-ccCCCCceeeccCcceee-Ecccc--CCceEeechhhhhC-cHHHHHHHHHh
Confidence 00 00011135555442110000 001111345666544310 01112 24455557784322 22334445556
Q ss_pred cCCCCccEEEEeeeeeeCCcccccccCCc---------------cCHHHHH-HhcCchhHHHHHhhc-CCCCccCCCHHH
Q 012397 262 CQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQIT-ERYHPLALRHFLISA-HYRSPLNYSVLQ 324 (464)
Q Consensus 262 ~~~~~~~~~~~~~~v~~~G~KmSks~gn~---------------i~~~dll-~~~~~dalR~~ll~~-~~~~~~~f~~~~ 324 (464)
+..+|. +.|.+.+..+|.|||||++.- .++.-|. ..+.++++|=|+... .-..+..|+++.
T Consensus 270 g~~~P~--~~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~ 347 (601)
T PTZ00402 270 GIRKPI--VEDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSK 347 (601)
T ss_pred CCCCce--EEEEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHH
Confidence 554433 467777777999999998862 1222222 368999999999887 446788999999
Q ss_pred HHHHHHH
Q 012397 325 LDSASDA 331 (464)
Q Consensus 325 ~~~~~~~ 331 (464)
+....+.
T Consensus 348 L~~~nr~ 354 (601)
T PTZ00402 348 LWYFNTQ 354 (601)
T ss_pred HHHHHHH
Confidence 9876553
|
|
| >TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-14 Score=147.77 Aligned_cols=254 Identities=20% Similarity=0.217 Sum_probs=150.7
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|||+|||||||++++.+.+|| ...| .++.-+||.+.+ +. ...|.+.|.++|++||+.+
T Consensus 99 aPsPtG~LHiGharaalln~~~Ar--~~~G---~~iLRidDTDp~---R~----------~~e~~~~I~edL~wLGi~~- 159 (560)
T TIGR00463 99 APNPSGPLHIGHARAAILNQYFAK--KYKG---KLIIRFDDTDPR---RV----------KPEAYDMILEDLDWLGVKG- 159 (560)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH--hcCC---EEEEEeCcCCcc---cc----------cHHHHHHHHHHHHHcCCCC-
Confidence 699999999999999999999998 4445 455555555431 21 2348899999999999995
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC----------CCCCCCCCCcc-c---cccccCCC-------
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SPNYGRLSGQR-L---ENNRAGER------- 184 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~----------~~~~g~l~~~~-~---~~~~~g~~------- 184 (464)
+..+++|+|.+.+.++..+|+++|.+| +++|... ...|..++..+ + +++.+|..
T Consensus 160 d~~~~qSd~~~~y~~~a~~Li~~G~AY-----~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~l 234 (560)
T TIGR00463 160 DEVVYQSDRIEEYYDYCRKLIEMGKAY-----VCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVV 234 (560)
T ss_pred CccccccccHHHHHHHHHHHHHcCCce-----eecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEE
Confidence 788999999999999999999999999 4444321 11233333211 1 12222211
Q ss_pred -cccCCcccC--cccccccccccCCCCcccC-CCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhh
Q 012397 185 -VAVDSRKRN--PADFALWKAAKAGEPSWDS-PWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCA 260 (464)
Q Consensus 185 -~~~~~~k~~--~~d~~~w~~~~~g~~~~~~-~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a 260 (464)
+..+....+ -+|+.+++....-.+ +.. .| ...|+|+.++... .... .++-.+-|.|+...-. .......+
T Consensus 235 R~K~d~~~~n~~~rD~V~~R~~~~~h~-~~Gd~~-~~~PtYdfA~~VD-D~l~--gITHviRg~E~~~nT~-rq~yl~~~ 308 (560)
T TIGR00463 235 RAKTDYKHKNPAIRDWVIFRINKTPHP-RTGDKY-KVYPTMDFSVPID-DHLL--GVTHVLRGKDHIDNER-KQQYIYMY 308 (560)
T ss_pred EEECCCcCCCccccCcEEEEecCCCcc-ccCCEE-EEEeccccceEee-cccC--CCCeEEechhhhcCCH-HHHHHHHH
Confidence 111110011 145555543211000 000 11 1356665443110 1112 2445555778433111 22333344
Q ss_pred ccCCCCccEEEEeeeeee-CCcccccccC-------Cc--------cCHHHHHH-hcCchhHHHHHhhc-CCCCccCCCH
Q 012397 261 ACQDSNVSYWMHNGHVTN-NNEKMSKSLG-------NF--------FTIRQITE-RYHPLALRHFLISA-HYRSPLNYSV 322 (464)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~-~G~KmSks~g-------n~--------i~~~dll~-~~~~dalR~~ll~~-~~~~~~~f~~ 322 (464)
++..+ +. +.|.+++.+ +|.|+|||+. .+ .++..+.. .+.|+|||-|++.. .-..+..++|
T Consensus 309 lg~~~-P~-~~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~ 386 (560)
T TIGR00463 309 FGWEL-PE-FIHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSW 386 (560)
T ss_pred cCCCC-Ce-EEEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeH
Confidence 44443 33 478899988 5569998762 11 24445444 59999999999987 4467889999
Q ss_pred HHHHHHHHH
Q 012397 323 LQLDSASDA 331 (464)
Q Consensus 323 ~~~~~~~~~ 331 (464)
+.+.+..+.
T Consensus 387 ~~l~~~nr~ 395 (560)
T TIGR00463 387 KNIYAFNKK 395 (560)
T ss_pred HHHHHHHHH
Confidence 998876553
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). |
| >PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.8e-14 Score=150.89 Aligned_cols=254 Identities=17% Similarity=0.031 Sum_probs=158.3
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|+|.|||||||++++...+|| +..|.=++.+.-|| . ..-...|.+.|.++|++||+.++
T Consensus 37 aPsPtG~lHiGhar~alln~~~A~--~~~G~~~LR~eDTd---~-------------~r~~~e~~~~I~~dl~wLG~~wd 98 (771)
T PRK14703 37 PPEPNGYLHIGHAKSILLNFGIAR--DYGGRCHLRMDDTN---P-------------ETEDTEYVEAIKDDVRWLGFDWG 98 (771)
T ss_pred CcCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCCCC---C-------------CcCChHHHHHHHHHHHHcCCCCC
Confidence 599999999999999999999999 66776666665555 2 11234588999999999999975
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CCCCCCCCCccc----cccccCC----
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLSGQRL----ENNRAGE---- 183 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~~~g~l~~~~~----~~~~~g~---- 183 (464)
.....+|++.+.+.+...+|+++|.+| +|+|... .+.|...+..+- +.+..|.
T Consensus 99 ~~~~~qS~~~~~y~~~a~~Li~~G~aY-----~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~g 173 (771)
T PRK14703 99 EHLYYASDYFERMYAYAEQLIKMGLAY-----VDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDG 173 (771)
T ss_pred CCceEeecCHHHHHHHHHHHHHcCCcc-----cCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcCC
Confidence 556788999999999999999999999 4555431 112222222111 1222332
Q ss_pred -Cc---ccCCcccC--cccccccccccCCCCcccCCCCC---CCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHH
Q 012397 184 -RV---AVDSRKRN--PADFALWKAAKAGEPSWDSPWGP---GRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENE 254 (464)
Q Consensus 184 -~~---~~~~~k~~--~~d~~~w~~~~~g~~~~~~~wg~---~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~ 254 (464)
.+ ..+....+ -+|+.+++....-.+ ..|. ..|.|+.++.. -.... .+.-..-|.|+... ...+
T Consensus 174 ~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~----~~Gd~~~i~PtYdfa~~v-dD~l~--gITHvlRg~E~~~~-~~~~ 245 (771)
T PRK14703 174 AHVLRAKIDMSSPNMKLRDPLLYRIRHAHHY----RTGDEWCIYPMYDFAHPL-EDAIE--GVTHSICTLEFENN-RAIY 245 (771)
T ss_pred CeEEEEEeeccCCcccCCCCEEEEEcCCCCC----CcCCCCCcCCCcccccee-ecccc--CCcEEEecHhhhhc-cHHH
Confidence 11 00110111 146666654211011 1333 25776654310 01112 23444456773322 1233
Q ss_pred HHHHhhccCCCC-ccEEEEeeeeeeCCccccccc-------CCcc--------CHHHHHH-hcCchhHHHHHhhc-CCCC
Q 012397 255 IAQSCAACQDSN-VSYWMHNGHVTNNNEKMSKSL-------GNFF--------TIRQITE-RYHPLALRHFLISA-HYRS 316 (464)
Q Consensus 255 ~a~~~a~~~~~~-~~~~~~~~~v~~~G~KmSks~-------gn~i--------~~~dll~-~~~~dalR~~ll~~-~~~~ 316 (464)
..+..+++..++ +.+ .+.+++.+.|.|||||+ |-+- ++..+.+ .|.|+|||-|++.. --..
T Consensus 246 ~~l~~~l~~~~~~P~~-~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~ 324 (771)
T PRK14703 246 DWVLDHLGPWPPRPRQ-YEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKT 324 (771)
T ss_pred HHHHHHhCCCCCCcce-eEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCcc
Confidence 444556655433 433 45688989999999998 4432 5666665 59999999999987 3457
Q ss_pred ccCCCHHHHHHHHHH
Q 012397 317 PLNYSVLQLDSASDA 331 (464)
Q Consensus 317 ~~~f~~~~~~~~~~~ 331 (464)
+..++++.+.+..+.
T Consensus 325 ~~~i~~~~L~~~~R~ 339 (771)
T PRK14703 325 NSTVDIGVLEFAIRD 339 (771)
T ss_pred CceecHHHHHHHHHH
Confidence 778999998876543
|
|
| >cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.9e-14 Score=130.56 Aligned_cols=189 Identities=18% Similarity=0.180 Sum_probs=123.9
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|.|||||+++++....+|| +..|.=++.+.-|| . ..-...+.+.+.++|++||+.++
T Consensus 7 APsPtG~LHlG~~~~al~n~l~ar--~~~G~~ilRieDtd---~-------------~r~~~~~~~~i~~dL~wlGl~~d 68 (239)
T cd00808 7 APSPTGFLHIGGARTALFNYLFAR--KHGGKFILRIEDTD---Q-------------ERSVPEAEEAILEALKWLGLDWD 68 (239)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCeEEEEECcCC---C-------------CCCchHHHHHHHHHHHHcCCCCC
Confidence 588999999999999999999999 45664444454444 1 11223477889999999999974
Q ss_pred C--------CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccc
Q 012397 126 T--------YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197 (464)
Q Consensus 126 ~--------~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~ 197 (464)
. ....+|++.+.+.+...+|+++| +
T Consensus 69 ~~~~~~g~~~~~~QS~r~~~y~~~~~~L~~~g-------d---------------------------------------- 101 (239)
T cd00808 69 EGPDVGGPYGPYRQSERLEIYRKYAEKLLEKG-------D---------------------------------------- 101 (239)
T ss_pred cCCccCCCCCCEeeeCCHHHHHHHHHHHHHcC-------C----------------------------------------
Confidence 3 15678899999999999999988 0
Q ss_pred cccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeee
Q 012397 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT 277 (464)
Q Consensus 198 ~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~ 277 (464)
+.|+|+.+.... .... .++..+-|+|+.. |.........+++.++| . +.|...++
T Consensus 102 -------------------g~ptY~~a~~vD-D~~~--~ithViRG~D~~~-~t~~q~~l~~aLg~~~p-~-~~h~pll~ 156 (239)
T cd00808 102 -------------------GFPTYHLANVVD-DHLM--GITHVIRGEEHLS-STPKQILLYEALGWEPP-K-FAHLPLIL 156 (239)
T ss_pred -------------------CCcccccHHHHh-HHhc--CCCEEEEChhhhh-ChHHHHHHHHHcCCCCC-c-eEeecccc
Confidence 111222111100 0012 3566677889331 11233444556665443 3 35666654
Q ss_pred -eCCcccccccCCccCHHHHHH-hcCchhHHHHHhhcCCCC---ccCCCHHHH
Q 012397 278 -NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYRS---PLNYSVLQL 325 (464)
Q Consensus 278 -~~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~~~~~---~~~f~~~~~ 325 (464)
.+|.|||||.|+ .++..+.+ .+.+++++.|++...... ..-++.+++
T Consensus 157 ~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l 208 (239)
T cd00808 157 NPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEEL 208 (239)
T ss_pred CCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHH
Confidence 489999999999 68888766 589999999998643321 234555544
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PLN02907 glutamate-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=148.88 Aligned_cols=253 Identities=15% Similarity=0.103 Sum_probs=154.8
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|+|.|||||||++++...+|| +..|.=++.+.-|| . ..-..+|.+.|.++|++||+.+
T Consensus 219 aPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR~eDTd---p-------------~r~~~e~~~~I~~dl~wLG~~~- 279 (722)
T PLN02907 219 PPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVRFDDTN---P-------------SKESDEFVENILKDIETLGIKY- 279 (722)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCC---C-------------CcCChHHHHHHHHHHHHcCCCC-
Confidence 699999999999999999999999 66787777666665 2 1123458899999999999996
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC----------CCCCCCCCCcc----ccccccCCC-------
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SPNYGRLSGQR----LENNRAGER------- 184 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~----------~~~~g~l~~~~----~~~~~~g~~------- 184 (464)
|....+|++.+.+.+...+|+++|.+|.. .|... -..|..++..+ .+++..|..
T Consensus 280 d~~~~qS~r~~~y~~~a~~Li~~G~aY~~-----~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~l 354 (722)
T PLN02907 280 DAVTYTSDYFPQLMEMAEKLIKEGKAYVD-----DTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCV 354 (722)
T ss_pred CCcccccccHHHHHHHHHHHHHcCCeeec-----CCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEE
Confidence 67788999999999999999999999952 22210 01122222211 122322221
Q ss_pred -cccCCcccC--cccccccccccCCCC-cc-cCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHh
Q 012397 185 -VAVDSRKRN--PADFALWKAAKAGEP-SW-DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC 259 (464)
Q Consensus 185 -~~~~~~k~~--~~d~~~w~~~~~g~~-~~-~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~ 259 (464)
...+....+ -+|+.+.+.. +.+ .+ -..| ...|.|+.++.. -.... .++-.+-|.|+... ...+..+..
T Consensus 355 R~k~d~~~~n~~~~D~v~~R~~--~~~h~~~gd~~-~~~PtY~fa~~v-dD~~~--gIThvlRg~e~~~~-t~~q~~l~~ 427 (722)
T PLN02907 355 RGKLDMQDPNKSLRDPVYYRCN--PTPHHRIGSKY-KVYPTYDFACPF-VDALE--GVTHALRSSEYHDR-NAQYYRILE 427 (722)
T ss_pred EEEcccCCCCCCcccCEEEEec--CCcccccCCcc-ceeeccCCceEE-EcccC--CCceEeecHhhhhC-hHHHHHHHH
Confidence 111100011 1354444331 111 00 0112 345666544310 01112 24445557783321 112344455
Q ss_pred hccCCCCccEEEEeeeeeeCCccccccc-------CCc--------cCHHHHHH-hcCchhHHHHHhhc-CCCCccCCCH
Q 012397 260 AACQDSNVSYWMHNGHVTNNNEKMSKSL-------GNF--------FTIRQITE-RYHPLALRHFLISA-HYRSPLNYSV 322 (464)
Q Consensus 260 a~~~~~~~~~~~~~~~v~~~G~KmSks~-------gn~--------i~~~dll~-~~~~dalR~~ll~~-~~~~~~~f~~ 322 (464)
+++.+.| .+ .+.+++.++|.|||||+ |-+ .++..+.+ .+.+++||=|+... .-..+..|++
T Consensus 428 ~lg~~~p-~~-~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~ 505 (722)
T PLN02907 428 DMGLRKV-HI-WEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEW 505 (722)
T ss_pred HcCCCCC-ee-EEEEEEcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccH
Confidence 6665544 33 45678888999999998 432 24566654 49999999999987 4467889999
Q ss_pred HHHHHHHHH
Q 012397 323 LQLDSASDA 331 (464)
Q Consensus 323 ~~~~~~~~~ 331 (464)
+.+....+.
T Consensus 506 ~~l~~~nr~ 514 (722)
T PLN02907 506 DKLWTINKK 514 (722)
T ss_pred HHHHHHHHH
Confidence 999876553
|
|
| >TIGR00440 glnS glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.4e-14 Score=143.08 Aligned_cols=255 Identities=15% Similarity=0.047 Sum_probs=147.5
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|+|.|||||||++++...+|| +..|.=++.+.-||- ..-..+|.+.|.++|++||+.++
T Consensus 6 aPsPtG~LHiG~ar~al~n~~~A~--~~~G~~iLRieDTd~----------------~r~~~e~~~~I~~dL~wLG~~~d 67 (522)
T TIGR00440 6 PPEPNGYLHIGHAKSICLNFGYAK--YYNGTCNLRFDDTNP----------------VKEDPEYVESIKRDVEWLGFKWE 67 (522)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEEcCCCc----------------ccCChHHHHHHHHHHHHcCCCCC
Confidence 589999999999999999999999 667777777666652 11224588999999999999975
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CCCCCCCCCccc----cccccCCC---
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLSGQRL----ENNRAGER--- 184 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~~~g~l~~~~~----~~~~~g~~--- 184 (464)
+....+|++.+.+.+...+|+++|.+| +++|... ...|..++..+. +++.+|..
T Consensus 68 ~~~~~qS~~~~~~~~~a~~Li~~G~AY-----~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g 142 (522)
T TIGR00440 68 GKIRYSSDYFDELYRYAEELIKKGLAY-----VDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEG 142 (522)
T ss_pred CCceEccccHHHHHHHHHHHHHcCCEE-----eecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCC
Confidence 666788899999999999999999999 4555431 012222322211 12333321
Q ss_pred --c---ccCCcccCc--ccccccccccCCCCcccC-CCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHH
Q 012397 185 --V---AVDSRKRNP--ADFALWKAAKAGEPSWDS-PWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256 (464)
Q Consensus 185 --~---~~~~~k~~~--~d~~~w~~~~~g~~~~~~-~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a 256 (464)
+ ..+....++ +|+...+-.....+ +.. .| ...|.|+.++.. -....| ++-..-|.|+..-- ..+-+
T Consensus 143 ~~vlR~Kid~~~~n~~~rD~V~~Ri~~~~h~-~~gdk~-~iyPtYdfa~~v-dD~l~g--ITHviRg~E~~~nt-~~Y~~ 216 (522)
T TIGR00440 143 KAILRAKIDMASPFPVMRDPVAYRIKFAPHH-QTGTKW-CIYPMYDFTHCI-SDAMEN--ITHSLCTLEFQDNR-RLYDW 216 (522)
T ss_pred CeEEEEeCcCCCCCceEeeeeEEEEecCCCC-CCCCCe-eEEeCcCCceee-hhccCC--CceEeecHhhhhcH-HHHHH
Confidence 1 011000011 23333222111000 000 11 125666544310 011122 33444466732111 11222
Q ss_pred HHhhccCCCCccEEEEeeeeeeCCcccccccCCc---------------cCHHHHHH-hcCchhHHHHHhhcCCCC-ccC
Q 012397 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-RYHPLALRHFLISAHYRS-PLN 319 (464)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~---------------i~~~dll~-~~~~dalR~~ll~~~~~~-~~~ 319 (464)
....++....+.. .+.+++..+|.|||||++.. .++..+.+ .|.|+|||-|++...+.+ +..
T Consensus 217 ~~~~l~~~~~P~~-~~F~rln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~ 295 (522)
T TIGR00440 217 VLDNIHIFPRPAQ-YEFSRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNN 295 (522)
T ss_pred HHHhcCccCCCce-EEEEEECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCc
Confidence 2222333212322 34567888999999999874 37788877 599999999999875543 334
Q ss_pred CCHHHHHHHHH
Q 012397 320 YSVLQLDSASD 330 (464)
Q Consensus 320 f~~~~~~~~~~ 330 (464)
.++..+.+..+
T Consensus 296 ~e~~~l~~~~r 306 (522)
T TIGR00440 296 IEVVRLESCIR 306 (522)
T ss_pred eehhhHHHHHH
Confidence 56666665543
|
This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases. |
| >PTZ00437 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=140.60 Aligned_cols=254 Identities=18% Similarity=0.158 Sum_probs=151.0
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
|+++.=+ +|+|+|+|||||||++++...+|| +..|.=++.+.-|| . ......|.+.|.++|
T Consensus 50 gkv~tRF-aPsPtG~LHiGharaalln~~~Ar--~~gG~~iLRiEDTD---p-------------~r~~~e~~~~I~~dL 110 (574)
T PTZ00437 50 GKPYFRF-PPEPNGFLHIGHAKSMNLNFGSAR--AHGGKCYLRYDDTN---P-------------ETEEQVYIDAIMEMV 110 (574)
T ss_pred CcEEEEe-CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEECCCC---c-------------cccChHHHHHHHHHH
Confidence 4544333 599999999999999999999999 56777666666665 1 223346889999999
Q ss_pred HhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC----------CCCCCCCCCcc----ccccccC-
Q 012397 118 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SPNYGRLSGQR----LENNRAG- 182 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~----------~~~~g~l~~~~----~~~~~~g- 182 (464)
++||+.+ +....+|+|.+.+.+...+|+++|.+| +++|..+ ...|...+..+ .+++.+|
T Consensus 111 ~wLGi~~-D~~~~qS~y~~~~ye~A~~Li~~G~AY-----~C~cs~eei~~~R~~~~~~~~R~~~~eenL~lfe~M~~g~ 184 (574)
T PTZ00437 111 KWMGWKP-DWVTFSSDYFDQLHEFAVQLIKDGKAY-----VDHSTPDELKQQREQREDSPWRNRSVEENLLLFEHMRQGR 184 (574)
T ss_pred HHcCCCC-CCCCcCchhHHHHHHHHHHHHHcCCEE-----EcCCCHHHHHHHhhcccCCccccCCHHHHHHHHHHHhhcc
Confidence 9999996 666778899998788889999999999 5666542 01122222111 1122222
Q ss_pred ----CCcc---cCCcccCc--ccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccc----
Q 012397 183 ----ERVA---VDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP---- 249 (464)
Q Consensus 183 ----~~~~---~~~~k~~~--~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~---- 249 (464)
..+. .+....++ +|+...+-.....+.--..| ...|.|+.++ +++=+..|.-|+..
T Consensus 185 ~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~-~iyPtYdFa~----------~vdD~l~gITHvlct~Ef 253 (574)
T PTZ00437 185 YAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKW-CIYPSYDFTH----------CLIDSLEDIDYSLCTLEF 253 (574)
T ss_pred cccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCce-EEEccCcccc----------eeechhcCCCEEeeechh
Confidence 2110 11101111 23333321111111000123 3456655433 33333333332210
Q ss_pred --cchH--HHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCc---------------cCHHHHHH-hcCchhHHHHH
Q 012397 250 --HHEN--EIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-RYHPLALRHFL 309 (464)
Q Consensus 250 --h~~~--~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~---------------i~~~dll~-~~~~dalR~~l 309 (464)
+..- |+ ...++...|.. .+.+-+.++|.|||||+... .++..+.+ .|.|+|||-|+
T Consensus 254 ~~r~~~y~wl--~~~l~l~~p~~--~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~ 329 (574)
T PTZ00437 254 ETRRESYFWL--LEELNLWRPHV--WEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFC 329 (574)
T ss_pred hcccHHHHHH--HHHhCCcccce--EeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHH
Confidence 1111 33 23333333332 34467778999999998884 36666665 59999999999
Q ss_pred hhcCC-CCccCCCHHHHHHHHHH
Q 012397 310 ISAHY-RSPLNYSVLQLDSASDA 331 (464)
Q Consensus 310 l~~~~-~~~~~f~~~~~~~~~~~ 331 (464)
+...+ ..+..++++.+.+..+.
T Consensus 330 ~~~G~sk~~~~i~~~~Le~~nR~ 352 (574)
T PTZ00437 330 ELVGITRSMNVIQISMLENTLRE 352 (574)
T ss_pred HHhCCCccceEeeHHHHHHHHHH
Confidence 98744 57789999999877553
|
|
| >PLN02859 glutamine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.8e-13 Score=141.28 Aligned_cols=258 Identities=16% Similarity=0.117 Sum_probs=147.9
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
|+|+.=+ +|.|+|.|||||||++++...+|| +..|.=.+.+.-|| . ..-...|.+.|.+++
T Consensus 263 g~V~tRF-aPsPtG~LHiGharaallN~~~Ar--~~~G~~~LRieDTd---p-------------~r~~~e~~~~I~edL 323 (788)
T PLN02859 263 GKVYTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGCCYLRFDDTN---P-------------EAEKKEYIDHIEEIV 323 (788)
T ss_pred CceEEEe-CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCC---C-------------CccchHHHHHHHHHH
Confidence 4544333 489999999999999999999999 55676666655555 2 222345889999999
Q ss_pred HhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-----------CCCCCCCCCc----ccccccc-
Q 012397 118 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-----------SPNYGRLSGQ----RLENNRA- 181 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-----------~~~~g~l~~~----~~~~~~~- 181 (464)
++||+.+ +...++|++.+.+-+...+|+++|.+| +++|... |+ |...+.. ..+++..
T Consensus 324 ~WLG~~~-d~~~~qSd~f~~~Y~~A~~Li~~G~AY-----~C~ct~eei~~~R~~~~~sp-~Rd~s~eenl~lfe~m~~g 396 (788)
T PLN02859 324 EWMGWEP-FKITYTSDYFQELYELAVELIRRGHAY-----VDHQTPEEIKEYREKKMNSP-WRDRPIEESLKLFEDMRRG 396 (788)
T ss_pred HHcCCCC-CCcccccHhHHHHHHHHHHHHHcCCeE-----eccCCHHHHHHHHhhhccCC-CCCCChHHhhhhhHHHHhc
Confidence 9999985 666788888865556778899999999 5555441 22 1111110 1112221
Q ss_pred ----CCCc---ccCCcccCc--ccccccccccCCCCccc-CCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccc
Q 012397 182 ----GERV---AVDSRKRNP--ADFALWKAAKAGEPSWD-SPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHH 251 (464)
Q Consensus 182 ----g~~~---~~~~~k~~~--~d~~~w~~~~~g~~~~~-~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~ 251 (464)
|..+ ..+....++ +|....+-.....+ +. ..|=+ .|.|+.++. +-....| +.-..-|.|+.. +.
T Consensus 397 ~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~-rtgdk~~i-yPtYdFA~~-vdD~leg--ITHvLRg~E~~~-~~ 470 (788)
T PLN02859 397 LIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHP-HAGDKWCI-YPSYDYAHC-IVDSLEN--ITHSLCTLEFET-RR 470 (788)
T ss_pred hhccCCeEEEEeccCCCCCceeeeceeEEEeccCCC-ccCCCeEE-Eeccccccc-ccccccC--CceEeechhhhc-CC
Confidence 2111 000000011 22222211100000 00 12211 566554321 1011122 333344566321 12
Q ss_pred hHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCc---------------cCHHHHHH-hcCchhHHHHHhhcCCC
Q 012397 252 ENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-RYHPLALRHFLISAHYR 315 (464)
Q Consensus 252 ~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~---------------i~~~dll~-~~~~dalR~~ll~~~~~ 315 (464)
..+.-+..+++..+|. +.|.+.+.++|.|||||++.. .++..+.+ .|.|+|||-|++...+.
T Consensus 471 ~~y~wl~~aLg~~~P~--~~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s 548 (788)
T PLN02859 471 ASYYWLLDSLGLYQPY--VWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGIT 548 (788)
T ss_pred HHHHHHHHHcCCCCCc--EEeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 2233445566654444 356677777999999999764 36667766 59999999999987444
Q ss_pred -Ccc-CCCHHHHHHHH
Q 012397 316 -SPL-NYSVLQLDSAS 329 (464)
Q Consensus 316 -~~~-~f~~~~~~~~~ 329 (464)
.+. .|+++.+..+.
T Consensus 549 ~~~~e~i~~~~Le~~~ 564 (788)
T PLN02859 549 RSDNSLIRMDRLEHHI 564 (788)
T ss_pred CCCCceecHHHHHhhC
Confidence 344 69999985443
|
|
| >cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.5e-13 Score=118.47 Aligned_cols=140 Identities=11% Similarity=0.011 Sum_probs=117.1
Q ss_pred hcCchhHHHHHhhcCCCCccCCCHHHHHHHHH-HHHHHHHHHHHHHHhcCcccc-CC----C-----ccCCChhHHHHHH
Q 012397 299 RYHPLALRHFLISAHYRSPLNYSVLQLDSASD-AVFYIYQTLQDCEVALSPFQE-HG----K-----TARINPAAEDCIN 367 (464)
Q Consensus 299 ~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~-~l~~l~~~~~~~~~~l~~~~~-~~----~-----~~~~d~~l~~~l~ 367 (464)
.+|.+++||++++....++++||++.+.+..+ +..+++|+++|+.+++++... .. . .++.|+.|+..+.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~ 81 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLA 81 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHH
Confidence 46789999999999999999999999776654 466999999999999877652 11 1 1345678899999
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCch-hhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 368 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 368 ~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
.+++.+..++ .+.++..++.. +.+++..+|+||+.+++.... .....|+.++.++..++++++.+|||.|+
T Consensus 82 ~~~~~i~~~~-~~~~~~~l~~~-l~~L~~~~~~ffd~v~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi~~~ 153 (156)
T cd07956 82 KFPEVVKNAA-ETLEPHTIATY-LFDLAHAFSKFYNACPVLGAEEELRNARLALVAAARQVLANGLDLLGIEAP 153 (156)
T ss_pred HhHHHHHHHH-HHcCcHHHHHH-HHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999998 78777777666 999999999999999886543 34678999999999999999999999887
|
This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA. |
| >KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=126.08 Aligned_cols=255 Identities=18% Similarity=0.196 Sum_probs=152.0
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (464)
|++=+ .|+|+|.||+|-+|+++.--++|| +..|.-++.+-.|| ++|. +..-...+.++|++
T Consensus 34 VRvRF-APSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTD------q~R~----------v~gs~e~i~~~L~w 94 (524)
T KOG1149|consen 34 VRVRF-APSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTD------QKRL----------IRGSEEAIYEDLKW 94 (524)
T ss_pred eEEee-cCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEecccc------cccc----------ccchHHHHHHHHHh
Confidence 34444 388999999999999999999999 77888888888887 2222 22234679999999
Q ss_pred cCCCCCCCC--------CCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CC----CCCCCCC
Q 012397 120 LQCLPPTYQ--------PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SP----NYGRLSG 173 (464)
Q Consensus 120 lgi~~~~~~--------~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~----~~g~l~~ 173 (464)
+||.+++.. .++|+..+.+++..++|++.|.+| .|||... -| .|..++.
T Consensus 95 ~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AY-----rCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~ 169 (524)
T KOG1149|consen 95 ANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAY-----RCFCSEERLDLLRKSALKKHEIPRYDRKCANLSD 169 (524)
T ss_pred cCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCee-----EeccCHHHHHHHHHhhhccCCCCcccchhcccCH
Confidence 999974432 456688899999999999999999 6777652 12 3445555
Q ss_pred cccccccc-CCCcccC--CcccCc--cccc----cccccc-CCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEec
Q 012397 174 QRLENNRA-GERVAVD--SRKRNP--ADFA----LWKAAK-AGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 243 (464)
Q Consensus 174 ~~~~~~~~-g~~~~~~--~~k~~~--~d~~----~w~~~~-~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G 243 (464)
.++....+ |....+. -.++++ .|.. .|.... .|.+. .--.++.|+||.++... .+.++ +.-..-|
T Consensus 170 ~ei~~~lakg~pf~iRFrl~~~~~~f~DLvyG~v~~~~d~~~gD~V--vmKSDgfPTYHfAnVVD-Dh~M~--IsHViRG 244 (524)
T KOG1149|consen 170 AEIKQKLAKGTPFTIRFRLPKESPPFTDLVYGKVNHNVDSNEGDPV--VMKSDGFPTYHFANVVD-DHLMG--ISHVIRG 244 (524)
T ss_pred HHHHHHHhcCCCeeEEEecCCCCCChhhhhhhhhhccccccCCCcE--EEecCCCcceeeeeeec-chhcc--hhheeec
Confidence 55443322 3221110 001111 0111 011100 11110 11235778888664211 11111 1222224
Q ss_pred ccCccccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHh-cCchhHHHHHhhc---CCCCcc
Q 012397 244 IDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER-YHPLALRHFLISA---HYRSPL 318 (464)
Q Consensus 244 ~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~---~~~~~~ 318 (464)
...+.. +.-......|++..||. +.|-..++. +|+|.|||.|. +.+.++.++ |=|+|+=-|++.. ....+-
T Consensus 245 eEWlpS-T~KH~lLYkAfgW~pPk--FaHlpLl~n~d~sKLSKRqgD-~~vs~~~e~G~LPeallN~ial~Gwg~~~~~~ 320 (524)
T KOG1149|consen 245 EEWLPS-TLKHILLYKAFGWQPPK--FAHLPLLLNPDGSKLSKRQGD-ASVSHYREQGYLPEALLNYIALLGWGFRTENE 320 (524)
T ss_pred chhccc-cHHHHHHHHHhCCCCCc--eeeeeeeecCCcchhhhhcCc-chHHHHHHcCCChHHHHHHHHHcCCCcccccc
Confidence 452111 11234444566555554 366555554 99999999999 677777764 7789988888764 334556
Q ss_pred CCCHHHHHH
Q 012397 319 NYSVLQLDS 327 (464)
Q Consensus 319 ~f~~~~~~~ 327 (464)
-|+.+++..
T Consensus 321 f~sl~eLie 329 (524)
T KOG1149|consen 321 FFSLEELIE 329 (524)
T ss_pred cccHHHHHH
Confidence 778887764
|
|
| >cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=111.32 Aligned_cols=140 Identities=17% Similarity=0.186 Sum_probs=111.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC------CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHH
Q 012397 320 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQD 393 (464)
Q Consensus 320 f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~ 393 (464)
|+.+.+.+..+.+.++||+++++.+.+.+.... ......|+|++.++++++.++.++| ++++++.|+.. +++
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~-e~~~f~~a~~~-i~~ 78 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAY-ENYEFHKVYQA-LNN 78 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHH
Confidence 466788888889999999998887665543211 1224578999999999999999999 99999999999 999
Q ss_pred HHH--HHHHHhhhhcccCc--hhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh---HhHhcCCCC
Q 012397 394 ALK--FINSSLNMLKKKQP--KQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL---LHVFFDDSP 462 (464)
Q Consensus 394 l~~--~~n~~~~~~~~~~~--~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~---~~~~~~~~~ 462 (464)
++. .+|.|++..+||.. .+.+..+.....++..+++.++.+|+ |+|+ +||+||+.|+.. .+++...||
T Consensus 79 f~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~-~aeel~~~l~~~~~~~~v~~~~wP 154 (180)
T cd07960 79 FCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPF-TAEEVWEHLPGEKKEESVFLEDWP 154 (180)
T ss_pred HHHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhh-hHHHHHHhccccCCCCCeeccCCC
Confidence 996 56999999999864 12223344566788999999999999 9999 999999999752 456666666
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.3e-11 Score=107.38 Aligned_cols=139 Identities=11% Similarity=0.107 Sum_probs=107.6
Q ss_pred CCHHHHHHHHH-HHHHHHHHHHHHHH--hcCccccC------CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHH
Q 012397 320 YSVLQLDSASD-AVFYIYQTLQDCEV--ALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 390 (464)
Q Consensus 320 f~~~~~~~~~~-~l~~l~~~~~~~~~--~l~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~y 390 (464)
||++.+.+..+ .+.+|||+++++.+ .+.+..+. ......|+|++.++++++.++.++| ++|+++.|+..
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~-e~~~f~~a~~~- 78 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEM-EAYDLYTAVRA- 78 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-
Confidence 68889988877 89999999987754 33322111 1235688999999999999999999 99999999999
Q ss_pred HHHHHHHH-HHHhhhhcc--cCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh-----HhHhcCCC
Q 012397 391 FQDALKFI-NSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL-----LHVFFDDS 461 (464)
Q Consensus 391 l~~l~~~~-n~~~~~~~~--~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~-----~~~~~~~~ 461 (464)
+++++... +.|++.+++ |...+ ...+.....++..+++.++.+|+ |+|+ +||+||+.++.. .++....|
T Consensus 79 l~~f~~~~~~~Y~e~~K~~~~~~~~-~~~~~~~~~~l~~~l~~ll~ll~P~~P~-~aEElw~~l~~~~~~~~~si~~~~w 156 (183)
T cd07961 79 LLEFIDELTNWYIRRNRKRFWGEEG-DDDKLAAYATLYEVLLTLSRLMAPFTPF-ITEEIYQNLRRELGDAPESVHLLDW 156 (183)
T ss_pred HHHHHHHhhhhHhhhchHHhcCCCC-chhHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHhhhhcCCCCCceeeecC
Confidence 99999865 778887654 54321 22355567789999999999999 9999 999999999742 35666666
Q ss_pred C
Q 012397 462 P 462 (464)
Q Consensus 462 ~ 462 (464)
|
T Consensus 157 P 157 (183)
T cd07961 157 P 157 (183)
T ss_pred C
Confidence 5
|
This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA. |
| >cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=100.91 Aligned_cols=128 Identities=12% Similarity=0.135 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC----CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Q 012397 320 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL 395 (464)
Q Consensus 320 f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~----~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~ 395 (464)
||.+.+....+.+.++|+.+..+.......... ......|++++..+++++.++.++| ++++++.|+.. +++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~-i~~~~ 78 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEAL-ENYRFSEAATA-LYEFF 78 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHH
Confidence 678888888899999999987663321211110 1123456899999999999999999 99999999999 99999
Q ss_pred H--HHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHh
Q 012397 396 K--FINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAF 450 (464)
Q Consensus 396 ~--~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l 450 (464)
. .+|+|++..+||....+.......+.++.++++.++.+|. |+|+ +|+++|+.|
T Consensus 79 ~~~~~N~Yi~~~~pW~~~~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~-~ae~l~~~L 135 (135)
T cd07962 79 WNDFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLLHPFMPF-ITEELWQRL 135 (135)
T ss_pred HHHHhHHHHHHhhHHHcCCChHHHHHHHHHHHHHHHHHHHHHCccccH-HHHHHHhcC
Confidence 7 6999999999996432222234466789999999999999 9999 999999875
|
This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA. |
| >cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-10 Score=97.49 Aligned_cols=92 Identities=11% Similarity=0.144 Sum_probs=81.1
Q ss_pred cCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhh--hhhHHHHHHHHHHHHHHHHH
Q 012397 356 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ--QLSLIESLRKIENEVKEVLR 433 (464)
Q Consensus 356 ~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~--~~~r~~~~~~~~~~l~~~l~ 433 (464)
++.|++++.+++++.+++.++| ++++++.|+.. ++++++.+|+|++..+||...+. .+.+...+..+.++++.++.
T Consensus 35 ~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~-~~~~~~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~ 112 (129)
T cd07957 35 TEEDEELLEEAEELLEEVAEAM-EELEFRKALEE-IMELARAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAI 112 (129)
T ss_pred CcccHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-HHHHHHHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999 99999999999 99999999999999999975432 23344567889999999999
Q ss_pred hhc-cCCCccHHHHHHHh
Q 012397 434 ILG-LLPPGAYSEVKTAF 450 (464)
Q Consensus 434 lLg-i~p~~~~e~i~~~l 450 (464)
+|+ |+|+ +||+||+.|
T Consensus 113 lL~P~~P~-~aeei~~~l 129 (129)
T cd07957 113 LLSPFMPE-TAEKILDQL 129 (129)
T ss_pred HhcCCCCh-HHHHHHHhC
Confidence 999 9999 999999875
|
This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA. |
| >cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.8e-10 Score=93.84 Aligned_cols=115 Identities=11% Similarity=0.028 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHH-HHHHHHH
Q 012397 320 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAF-QDALKFI 398 (464)
Q Consensus 320 f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl-~~l~~~~ 398 (464)
|+.+.+....|.+.+++..+....... .+....++.|++++.+++++.+++.++| ++++++.|++. + +++.+.+
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~i~~v~~~~-~~~~f~~a~~~-~~~~~~~~~ 75 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIETE---GELEELTFIDRWLLSRLNRLIKETTEAY-ENMQFREALKE-GLYELQNDL 75 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcc---CCccccchhHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHH-HHHHHHHHH
Confidence 566777777777777777665422111 1111234678999999999999999999 89999999999 7 9999999
Q ss_pred HHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHh
Q 012397 399 NSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAF 450 (464)
Q Consensus 399 n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l 450 (464)
|+|++..++|. ...++.++++.++.+|+ |+|+ +||+||+.|
T Consensus 76 ~~Y~~~~~~~~----------~~~~~~~~l~~~~~lL~P~~P~-~aeeiw~~~ 117 (117)
T cd07959 76 DWYRERGGAGM----------NKDLLRRFIEVWTRLLAPFAPH-LAEEIWHEL 117 (117)
T ss_pred HHHHHHhCccc----------hHHHHHHHHHHHHHHHcCcchH-hHHHHHhhC
Confidence 99998888761 23578899999999999 9999 999999975
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-10 Score=94.13 Aligned_cols=115 Identities=8% Similarity=0.132 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh-cCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Q 012397 320 YSVLQLDSASDAVFYIYQTLQDCEVA-LSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI 398 (464)
Q Consensus 320 f~~~~~~~~~~~l~~l~~~~~~~~~~-l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~ 398 (464)
|+.+.+.+..|.+.++++.+.+.... .... ......+.|++++..++++.+++.++| ++++++.|+.. ++++++.+
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~-i~~~~~~~ 77 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPA-AAAELSEEDKELRRKLHKTIKKVTEDI-ERLRFNTAIAA-LMELVNAL 77 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccccc-cccccchhhHHHHHHHHHHHHHHHHHH-hCCcchHHHHH-HHHHHHHH
Confidence 57788888999999999987654322 1110 001224568999999999999999999 99999999999 99999999
Q ss_pred HHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHh
Q 012397 399 NSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAF 450 (464)
Q Consensus 399 n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l 450 (464)
|+|++...| ...++.++++.++.+|+ |+|+ +||+||+.|
T Consensus 78 n~~~~~~~p------------~~~~~~~~l~~~~~lL~P~~P~-~aeei~~~l 117 (117)
T cd07958 78 YKYKKKDAQ------------HAAVLREALETLVLLLAPFAPH-IAEELWEEL 117 (117)
T ss_pred HHhhccccc------------hHHHHHHHHHHHHHHHcccchH-HHHHHHhhC
Confidence 999876554 34688899999999999 9999 999999875
|
This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA. |
| >PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-09 Score=92.06 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCccccCCC----------ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhh
Q 012397 335 IYQTLQDCEVALSPFQEHGK----------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNM 404 (464)
Q Consensus 335 l~~~~~~~~~~l~~~~~~~~----------~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~ 404 (464)
++|+++|++++++++..... .++.++.|+..+.+++..+..++ .+++++.++. |+++++..+|+||+.
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~-~~~~p~~l~~-yL~~La~~f~~fy~~ 78 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLARFPDVLEKAA-KDLEPHKLCD-YLYELAQAFNSFYDN 78 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCTHHHHHHHHH-HHT-CHHHHH-HHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 58999999999988753321 14456789999999999999999 7877555555 499999999999999
Q ss_pred hcccCchh-hh-hhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 405 LKKKQPKQ-QQ-LSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 405 ~~~~~~~~-~~-~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
++++.... .. ..|+.++.++..+++.++.||||.|+
T Consensus 79 ~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llgi~~~ 116 (119)
T PF05746_consen 79 VRILDEDEEIRKNNRLALLKAVRQVLKNGLDLLGIEPL 116 (119)
T ss_dssp S-STTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT----
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99987533 33 78999999999999999999999886
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A. |
| >PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-09 Score=95.93 Aligned_cols=100 Identities=14% Similarity=0.117 Sum_probs=80.4
Q ss_pred ChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH-HHHH-HHHhhhhcccCchh-hhhhHHHHHHHHHHHHHHHHHhh
Q 012397 359 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDA-LKFI-NSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRIL 435 (464)
Q Consensus 359 d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l-~~~~-n~~~~~~~~~~~~~-~~~~r~~~~~~~~~~l~~~l~lL 435 (464)
|+|++.+++++.+.+.++| ++|+++.|+.. ++.+ ...+ |.|++..++|...+ ....|. +..++.++++.++.+|
T Consensus 1 D~~il~~~~~~~~~~~~~~-e~~~f~~a~~~-i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll 77 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAY-ENYEFNKALKE-IMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILL 77 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTT-HHHHHHH-HHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-HCCCHHHHHHH-HHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhcc
Confidence 6899999999999999999 99999999999 9997 5566 99999999985432 222255 7899999999999999
Q ss_pred c-cCCCccHHHHHHHh-----hhhHhHhcCCCC
Q 012397 436 G-LLPPGAYSEVKTAF-----LVLLHVFFDDSP 462 (464)
Q Consensus 436 g-i~p~~~~e~i~~~l-----~~~~~~~~~~~~ 462 (464)
+ |+|+ +||+||+.| +...++..+.||
T Consensus 78 ~P~~P~-~aEeiw~~l~~~~~~~~~si~~~~~p 109 (153)
T PF08264_consen 78 SPFMPF-IAEEIWQRLKSEKLGEKSSIFLEKWP 109 (153)
T ss_dssp TTTSHH-HHHHHHHHCTTHHTTSSSSGGGS---
T ss_pred CCCCcH-HHHHHHHHhhhccCCCCCeeeeCCCC
Confidence 9 9999 999999655 444556666666
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A .... |
| >smart00836 DALR_1 DALR anticodon binding domain | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-07 Score=79.04 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcCcccc-C-C------C-----ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHH
Q 012397 335 IYQTLQDCEVALSPFQE-H-G------K-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 401 (464)
Q Consensus 335 l~~~~~~~~~~l~~~~~-~-~------~-----~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~ 401 (464)
++|+++|+++++++... . . . .++.++.|+..+.++.+.+..++ .+.+++.++.. +.+++..+|+|
T Consensus 1 iqY~~~Ri~nIl~k~~~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~-~~~~~~~l~~~-l~~L~~~~~~f 78 (122)
T smart00836 1 VQYAHARICSILRKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAA-ETLEPHRLANY-LYDLASAFHSF 78 (122)
T ss_pred CcHHHHHHHHHHHHHHhcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHH-HHCCcHHHHHH-HHHHHHHHHHH
Confidence 46888999888776542 1 0 1 14456788899999999999988 77776666655 99999999999
Q ss_pred hhhhcccCch--hhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 402 LNMLKKKQPK--QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 402 ~~~~~~~~~~--~~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
|+.+++.+.. .....|+.++..+..++..++.+|||.|+
T Consensus 79 y~~v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~llgi~~~ 119 (122)
T smart00836 79 YNKCRVLGEENPELRAARLALLKAVRQVLANGLRLLGISAP 119 (122)
T ss_pred HccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 9999987653 34678999999999999999999999886
|
This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505. |
| >cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-07 Score=74.10 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccC---CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Q 012397 323 LQLDSASDAVFYIYQTLQDCEVALSPFQEH---GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN 399 (464)
Q Consensus 323 ~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~---~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n 399 (464)
+.+.+..+....+++.+..+........+. ....+.|+|++.+++++++++.++| ++++++.|+.. ++++++.+|
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~a~~~-i~~~~~~~n 79 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNAL-EALDPTTAVQE-LFKFTNELN 79 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHhcc
Confidence 344555554545555444433322221110 0114467999999999999999999 99999999999 999999999
Q ss_pred HHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc
Q 012397 400 SSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 436 (464)
Q Consensus 400 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg 436 (464)
+|++..+||...+. .+...+..+.++++.++.+|+
T Consensus 80 ~y~~~~~pw~~~~~--~~~~~~~~~~~~l~~l~~lL~ 114 (117)
T cd07375 80 WYLDELKPALQTEE--LREAVLAVLRAALVVLTKLLA 114 (117)
T ss_pred HHHHHhhHHHcCch--hHHHHHHHHHHHHHHHHHHHc
Confidence 99999999975432 233345667777888887776
|
This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway. |
| >KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=81.53 Aligned_cols=98 Identities=26% Similarity=0.307 Sum_probs=77.1
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
|+|.+=+ +|-|+|.||||||..+++-.-+|- +..|.=... .||- .|..-.++|.+.+.+++
T Consensus 199 GkVv~RF-PPEpSGyLHIGHAKAALLNqYfa~--~~~G~LIvR---FDDT-------------NPaKE~~eFe~~IleDl 259 (712)
T KOG1147|consen 199 GKVVTRF-PPEPSGYLHIGHAKAALLNQYFAQ--AYQGKLIVR---FDDT-------------NPAKENEEFEDVILEDL 259 (712)
T ss_pred CceEEec-CCCCCceeehhhHHHHHHHHHHHH--hcCceEEEE---ecCC-------------CcchhhHHHHHHHHHHH
Confidence 5555544 489999999999999987777665 555654443 3432 23333466899999999
Q ss_pred HhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeec
Q 012397 118 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE 155 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~ 155 (464)
..|||. ++.++.+|+|.+.+..+..+|++.|-+|..+
T Consensus 260 ~~LgIk-pd~~TyTSDyF~~i~dycv~likeGKAYvDD 296 (712)
T KOG1147|consen 260 SLLGIK-PDRVTYTSDYFDEIMDYCVKLIKEGKAYVDD 296 (712)
T ss_pred HHhCcC-cceeeechhhHHHHHHHHHHHHhcCcccccC
Confidence 999998 5999999999999999999999999999764
|
|
| >TIGR00233 trpS tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00016 Score=71.90 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=45.4
Q ss_pred eEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 012397 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (464)
Q Consensus 41 ~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (464)
..+.+|--|+|.+||||.-+++ ..+++-..|+++.+. -.|.|.. .. ..+.+++ ........+..++-..
T Consensus 3 ~~v~~G~~PTG~~HlG~~l~~~----~~~~~~q~~~~~~i~-IaD~ha~---t~--~~~~~~~-~~~~~~~~~~~~~lA~ 71 (328)
T TIGR00233 3 FRVLTGIQPSGKMHLGHYLGAI----QTKWLQQFGVELFIC-IADLHAI---TV--KDNTDPD-ALRKAREELAADILAV 71 (328)
T ss_pred CEEEEeeCCCcHhHHHHHHHHH----HHHHHHhCCCCEEEE-eecchhh---cC--CCCCCHH-HHHHHHHHHHHHHHHh
Confidence 3567889999999999955554 333333678887644 3333321 00 0111222 2233445556677788
Q ss_pred CCCCCC-CCCCcchh
Q 012397 121 QCLPPT-YQPRVSDH 134 (464)
Q Consensus 121 gi~~~~-~~~r~s~~ 134 (464)
|+.+.- .+.+.|+.
T Consensus 72 GlDp~k~~if~qS~~ 86 (328)
T TIGR00233 72 GLDPKKTFIFLQSDY 86 (328)
T ss_pred CcChhheEEEEcCCc
Confidence 987421 23444544
|
This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model. |
| >PRK12285 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00021 Score=72.01 Aligned_cols=87 Identities=23% Similarity=0.198 Sum_probs=53.2
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
.++...+.+|--|+|.+||||.- ....+.++++ .|+++. +.-.|+|.- ...+.+++++ +++...+..+
T Consensus 63 ~~~~~~iytG~~PSG~lHLGh~~---~~~~~~~lQ~-~g~~~~-i~IaD~ha~------~~~~~~~e~~-~~~~~~~~~~ 130 (368)
T PRK12285 63 NGKPFAVYTGFMPSGPMHIGHKM---VFDELKWHQE-FGANVY-IPIADDEAY------AARGLSWEET-REWAYEYILD 130 (368)
T ss_pred cCCCeEEEEccCCCCCccHHHHH---HHHHHHHHHh-cCCCEE-EEecchHHH------hcCCCCHHHH-HHHHHHHHHH
Confidence 35667788999999999999963 3344455444 888864 344554432 1113455544 4455567888
Q ss_pred HHhcCCCCC-CCCCCcchhH
Q 012397 117 MADLQCLPP-TYQPRVSDHM 135 (464)
Q Consensus 117 l~~lgi~~~-~~~~r~s~~~ 135 (464)
+..+|+.+. ..+...|+..
T Consensus 131 ~lA~G~Dp~k~~i~~qS~~~ 150 (368)
T PRK12285 131 LIALGFDPDKTEIYFQSENI 150 (368)
T ss_pred HHHhCCCccceEEEECCchH
Confidence 889999742 1234445443
|
|
| >PRK13354 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.9e-05 Score=76.63 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=42.5
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
.++++++|.|+...+. ...-...-.+...+. .++...++ .+|.|||||.||.|++.| +..+|..++=++.+.
T Consensus 186 ~~~iq~gG~DQ~~ni~-~grdl~~r~~~~~~~--~lt~PlL~g~dG~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 258 (410)
T PRK13354 186 DVDLQIGGTDQWGNIL-MGRDLQRKLEGEEQF--GLTMPLLEGADGTKMGKSAGGAIWLDP--EKTSPYEFYQFWMNI 258 (410)
T ss_pred CCCEEEecHHHHHHHH-HHHHHHHHhCCCCce--EeccCCccCCCCCccCCCCCCceeccC--CCCCHHHHHHHHHcC
Confidence 6889999999653322 112222222333322 23333443 489999999999999887 334466666555543
|
|
| >COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00068 Score=66.13 Aligned_cols=74 Identities=14% Similarity=-0.019 Sum_probs=47.1
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCC-eEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC-EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~-~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
...+.||-.|+|.|||||.-.++ -.++.-..++ ++ |++-.|.|.-. -.+.++++-.+++..++..++-
T Consensus 5 ~~~vlSG~~PSG~lHLGny~ga~----~~~v~~q~~~~~~-f~~IaDlha~t------~~~~~~~~~l~~~~~e~~a~~L 73 (314)
T COG0180 5 KFRVLSGIQPSGKLHLGNYLGAI----RNWVLLQEEYYEC-FFFIADLHAIT------VRQDPTEEDLRQATREVAADYL 73 (314)
T ss_pred CceEEecCCCCCCcchhHhHHHH----HHHHHHhcccCce-EEEEecHHHhh------cCCCChHHHHHHHHHHHHHHHH
Confidence 35677899999999999966553 3333334443 44 44556655421 1233444556667777888888
Q ss_pred hcCCCC
Q 012397 119 DLQCLP 124 (464)
Q Consensus 119 ~lgi~~ 124 (464)
.+|+.+
T Consensus 74 A~GiDP 79 (314)
T COG0180 74 AVGLDP 79 (314)
T ss_pred HhccCc
Confidence 899985
|
|
| >PRK08560 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00024 Score=70.74 Aligned_cols=75 Identities=13% Similarity=-0.080 Sum_probs=45.1
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++...+.+|--|+|.+||||+.... .+.++++ .|+++.+. =.|.|..-. ...++ +-..++...+...+
T Consensus 28 ~~~~~v~~G~~PTG~lHLG~~~~~~---~~~~lq~-~g~~~~i~-IaD~ha~~~------~~~~~-~~i~~~~~~~~~~~ 95 (329)
T PRK08560 28 KEEPKAYIGFEPSGKIHLGHLLTMN---KLADLQK-AGFKVTVL-LADWHAYLN------DKGDL-EEIRKVAEYNKKVF 95 (329)
T ss_pred CCCCEEEEccCCCCcchhhhhHHHH---HHHHHHH-CCCeEEEE-EccchhhcC------CCCCH-HHHHHHHHHHHHHH
Confidence 4444566899999999999965433 2455544 68886544 233332100 00233 34445666788888
Q ss_pred HhcCCCC
Q 012397 118 ADLQCLP 124 (464)
Q Consensus 118 ~~lgi~~ 124 (464)
..+|+.+
T Consensus 96 ~A~G~dp 102 (329)
T PRK08560 96 EALGLDP 102 (329)
T ss_pred HHcCCCh
Confidence 8999874
|
|
| >PRK05912 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00018 Score=73.62 Aligned_cols=72 Identities=18% Similarity=0.121 Sum_probs=43.9
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
.++++++|.|+.. |.....-...-.+.++.. -++...++ .+|+|||||.||.|++.| +.-+|..++=++.+.
T Consensus 188 ~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 260 (408)
T PRK05912 188 GCDLQLGGSDQWG-NILSGRDLQRRYGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDE--EKTSPYEMYQKWMNI 260 (408)
T ss_pred CCCEEeccHHHHH-HHHHHHHHHHHhCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCC--CCCCHHHHHHHHhcC
Confidence 6899999999763 333222222222322222 12333343 389999999999999887 455666666666653
|
|
| >cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0006 Score=66.10 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=42.1
Q ss_pred EEeCCCCCC-cCCcccchhHHHHHHHHHHHHHCCCeEEEecC-----Cccc-cHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 012397 43 YVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVRN-----FTDV-DDKIIRRANDLGENPLSLSNRYCQEYLV 115 (464)
Q Consensus 43 ~~~~P~p~G-~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~-----~dd~-g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 115 (464)
+.+|--|+| .|||||.-+. . ..+++...|+++.++-+ ++|. |... ++.-.+ .+-..++...+..
T Consensus 2 iy~G~~PTg~~lHlGh~~~l---~-~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~----~r~~~~-~~~i~~n~~~~~~ 72 (273)
T cd00395 2 LYCGIDPTADSLHIGHLIGL---L-TFRRFQHAGHRPIFLIGGQTGIIGDPSGKKS----ERTLND-PEEVRQNIRRIAA 72 (273)
T ss_pred eEEeEcCCCCCccHHHHHHH---H-HHHHHHHCCCCEEEEEecCceeeCCCCCccc----cccCCC-HHHHHHHHHHHHH
Confidence 357788999 7999996553 2 33444557999876543 2221 2100 011113 3444556777888
Q ss_pred HHHhcCCC
Q 012397 116 DMADLQCL 123 (464)
Q Consensus 116 ~l~~lgi~ 123 (464)
.+.++|+.
T Consensus 73 ~~~a~g~d 80 (273)
T cd00395 73 QYLAVGIF 80 (273)
T ss_pred HHHHhcCc
Confidence 88888875
|
Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=97.45 E-value=6.4e-05 Score=73.80 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=29.5
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecC
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRN 83 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~ 83 (464)
++...+.+|--|+|.+||||+.+.. ..+.+...|++|.+.-+
T Consensus 3 ~~~~~~y~G~~PTg~lHlG~l~~~~----~~~~lq~~g~~~~i~ia 44 (292)
T PF00579_consen 3 NKPFRVYTGIDPTGDLHLGHLVPIM----KLIWLQKAGFKVIILIA 44 (292)
T ss_dssp HSSEEEEEEEESSSS-BHHHHHHHH----HHHHHHHTTSEEEEEEE
T ss_pred CCCcEEEEeECCCCcccchHHHHHH----HHHHHHhcCCccceEec
Confidence 3456677889999999999988775 33344448999986653
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A .... |
| >PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00065 Score=50.31 Aligned_cols=60 Identities=32% Similarity=0.475 Sum_probs=42.1
Q ss_pred HHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhccCCCccHH
Q 012397 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYS 444 (464)
Q Consensus 372 ~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLgi~p~~~~e 444 (464)
++.++|+|++++|.|++. |+++++.+|+-.. .. ....+..+...++.+..+|||... ..+
T Consensus 1 ~F~~AmdDDfNT~~Ala~-lf~l~~~~N~~~~--~~---------~~~~~~~~~~~l~~~~~vLGl~~~-~~~ 60 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAA-LFELVKEINRALE--SN---------DKEDLEALAAALRKLLDVLGLLQE-DPE 60 (63)
T ss_dssp HHHHHHCBTS-HHHHHHH-HHHHHHHHHHHHH--CC----------HHHHHHHHHHHHHHHHCCT-S-S--HH
T ss_pred ChHHHHhHhcCcHHHHHH-HHHHHHHHHHhcc--cC---------CHHHHHHHHHHHHHHHhcCcCCCC-CHH
Confidence 468899999999999999 9999999999221 11 122335556788888999998765 444
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A. |
| >cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00038 Score=67.43 Aligned_cols=75 Identities=13% Similarity=0.043 Sum_probs=43.9
Q ss_pred EEeCCCCCC-cCCcccchhHHHHHHHHHHHHHCCCeEEEecCCcccc---HHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 43 YVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD---DKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 43 ~~~~P~p~G-~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g---~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
+.+|--|+| .+||||.-.+ -.+.++++ .|+++.+.-+ |.|. .+.-...++.+.++++ ..++...+...+.
T Consensus 3 iy~G~~PTg~~lHLG~~~~~---~~~~~lq~-~g~~~~ilI~-D~~a~~~~~~~~~~~r~~~~~~~-i~~~~~~~~~~~~ 76 (269)
T cd00805 3 VYIGFDPTAPSLHLGHLVPL---MKLRDFQQ-AGHEVIVLIG-DATAMIGDPSGKSEERKLLDLEL-IRENAKYYKKQLK 76 (269)
T ss_pred EEEeeCCCCCcccHHHHHHH---HHHHHHHH-CCCeEEEEEC-CCeeecCCCCCccccccCCCHHH-HHHHHHHHHHHHH
Confidence 457788999 9999995543 35666665 5988875543 1121 1110111122345544 4456667888888
Q ss_pred hcCCC
Q 012397 119 DLQCL 123 (464)
Q Consensus 119 ~lgi~ 123 (464)
.+|..
T Consensus 77 a~g~~ 81 (269)
T cd00805 77 AILDF 81 (269)
T ss_pred HHHcc
Confidence 88874
|
Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00083 Score=65.38 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=44.5
Q ss_pred EEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCC
Q 012397 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQC 122 (464)
Q Consensus 43 ~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 122 (464)
+.+|--|+|.|||||.-+++. ..+.++..|+++.+. =.|.|.. + ....++ +-.+++...+..++.++|+
T Consensus 2 i~tG~~PTG~lHLG~~~~al~---~~~~lQ~ag~~~~~~-IaD~ha~-t-----~~~~~~-~~~~~~~~~~~~~~lA~G~ 70 (280)
T cd00806 2 VLSGIQPSGSLHLGHYLGAFR---FWVWLQEAGYELFFF-IADLHAL-T-----VKQLDP-EELRQNTRENAKDYLACGL 70 (280)
T ss_pred EEEeeCCCchhhHHHHHHHHH---HHHHHHhCCCCEEEE-ecchHHH-h-----CCCCCH-HHHHHHHHHHHHHHHHcCC
Confidence 467888999999999776443 333445568887654 3333332 1 011233 3445566778888888999
Q ss_pred CC
Q 012397 123 LP 124 (464)
Q Consensus 123 ~~ 124 (464)
.+
T Consensus 71 dp 72 (280)
T cd00806 71 DP 72 (280)
T ss_pred Cc
Confidence 74
|
Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding |
| >PTZ00126 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0013 Score=66.63 Aligned_cols=87 Identities=8% Similarity=0.019 Sum_probs=48.2
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++...+.+|--|+|.+|||| .++..--+.. +...|++|.+.-+ |-|.. +- ...|.+++.+ +.....+...+
T Consensus 64 ~~~~~v~~G~~PTG~lHLG~--g~i~~~~~~~-lq~~G~~v~~~Ia-D~hA~-~~---~~~g~~l~~i-~~~~~~~~~~~ 134 (383)
T PTZ00126 64 KERPICYDGFEPSGRMHIAQ--GILKAINVNK-LTKAGCVFVFWVA-DWFAL-LN---NKMGGDLEKI-RKVGEYFIEVW 134 (383)
T ss_pred CCCCEEEEEECCCCcccccc--hHhHhHHHHH-HHhCCCeEEEEEc-cceee-cC---CCCCCCHHHH-HHHHHHHHHHH
Confidence 45556778899999999999 2222223333 3467998876532 11110 00 0122344443 44556677788
Q ss_pred HhcCCCCC-CCCCCcch
Q 012397 118 ADLQCLPP-TYQPRVSD 133 (464)
Q Consensus 118 ~~lgi~~~-~~~~r~s~ 133 (464)
..+|+.+. ..+...|+
T Consensus 135 ~A~GlDp~k~~i~~qS~ 151 (383)
T PTZ00126 135 KAAGMDMDNVRFLWASE 151 (383)
T ss_pred HHhCCCccceEEEECCh
Confidence 99999742 13344454
|
|
| >COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00048 Score=69.66 Aligned_cols=54 Identities=20% Similarity=0.051 Sum_probs=34.3
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccC
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFT 292 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~ 292 (464)
..|++++|.|+.+.|..+ .-.....+.+ +.+.+|...++- +|+|||||.||.++
T Consensus 180 ~~dlq~GG~DQ~~ni~~g-rdl~rr~g~~--~~~~lt~PLL~~ldG~KmgKs~~~a~~ 234 (401)
T COG0162 180 NKDLQLGGSDQWGNILAG-RDLIRRLGQK--KVVGLTTPLLTGLDGKKMGKSEGGAVW 234 (401)
T ss_pred ccchhcCChHHHHHHHHH-HHHHHHhCCC--CeEEEEeccccCCCCCcccccCCCceE
Confidence 467999999976666533 2222233442 333456555553 99999999999443
|
|
| >KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0018 Score=66.85 Aligned_cols=97 Identities=25% Similarity=0.223 Sum_probs=67.5
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
+|+|.-=+ +|-|+|.||||||-.+-+-=-+|++ ..|. .|.-.=| ..|+.-.++|-..|.++
T Consensus 246 GGkV~TRF-PPEPNG~LHIGHaKAInvNFgyAk~--~~G~--cyLRfDD--------------TNPEkEee~yf~sI~e~ 306 (764)
T KOG1148|consen 246 GGKVVTRF-PPEPNGILHIGHAKAINVNFGYAKA--HGGV--CYLRFDD--------------TNPEKEEEEYFESIKEM 306 (764)
T ss_pred CCeeEEeC-CCCCCceeeecchhheeechhhhhh--hCCe--EEEecCC--------------CCcchhhHHHHHHHHHH
Confidence 34543333 5889999999998654433334442 2332 2222211 24555567799999999
Q ss_pred HHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEe
Q 012397 117 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYV 153 (464)
Q Consensus 117 l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~ 153 (464)
.+|||..+ -..+.+|++.+..-++-.+|+.+|++|.
T Consensus 307 V~WLG~~P-~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 307 VAWLGFEP-YKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred HHHhCCCc-eeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 99999984 6677788999988889999999999994
|
|
| >PTZ00348 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.011 Score=63.84 Aligned_cols=86 Identities=7% Similarity=-0.068 Sum_probs=45.3
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
+...+.+|--|+|.+||||. +++-+-.+.+...|++|.+.- .|-|. - . -.+.|.+...... ....+.+.+.
T Consensus 31 ~~~rv~sGi~PTG~lHLGng---~~~aik~~~~~q~g~~~~~lI-AD~HA-l--t-~~~~~~~l~~i~~-~~~~~~~~~l 101 (682)
T PTZ00348 31 PLIRCYDGFEPSGRMHIAQG---IFKAVNVNKCTQAGCEFVFWV-ADWFA-L--M-NDKVGGELEKIRI-VGRYLIEVWK 101 (682)
T ss_pred CCCEEEEeeCCCCcCeeccH---HHHHHHHHHHHhCCCeEEEEE-cchhh-h--c-CCCCCCCHHHHHH-HHHHHHHHHH
Confidence 33457788999999999992 223112222345798876542 11111 0 0 0112223333322 2345667888
Q ss_pred hcCCCCC-CCCCCcch
Q 012397 119 DLQCLPP-TYQPRVSD 133 (464)
Q Consensus 119 ~lgi~~~-~~~~r~s~ 133 (464)
.+|+.+. ..+.+.|+
T Consensus 102 A~GlDpeK~~~~~qSd 117 (682)
T PTZ00348 102 AAGMDMDKVLFLWSSE 117 (682)
T ss_pred HcCCCccceEEEECcH
Confidence 9999753 13555554
|
|
| >TIGR00234 tyrS tyrosyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0077 Score=61.11 Aligned_cols=39 Identities=21% Similarity=0.162 Sum_probs=27.7
Q ss_pred ceEEEeCCCCCC-cCCcccchhHHHHHHHHHHHHHCCCeEEEec
Q 012397 40 VGMYVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVR 82 (464)
Q Consensus 40 ~~v~~~~P~p~G-~lHiGHar~~l~~D~laR~lr~~G~~V~~i~ 82 (464)
...+.+|--|+| .|||||+-+ .-.+.++ ...|+++.++-
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~---l~~l~~l-q~~G~~~~ili 69 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVP---LLKLRDF-QQAGHEVIVLL 69 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHH---HHHHHHH-HHCCCcEEEEE
Confidence 346678899999 999999544 3334444 45799998764
|
This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples. |
| >smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0095 Score=42.70 Aligned_cols=54 Identities=28% Similarity=0.354 Sum_probs=39.2
Q ss_pred HHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 012397 373 FHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437 (464)
Q Consensus 373 v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLgi 437 (464)
+.++|+|++++|.|++. ++++++.+|++.+... . . ..+..+...++.++.+||+
T Consensus 2 f~~al~DD~NT~~Al~~-l~~l~~~~N~~l~~~~--~----~----~~~~~~~~~~~~~~~ilGl 55 (56)
T smart00840 2 FEEAMDDDFNTPEALAV-LFELAREINRLLLKAV--D----A----EELAALAALLRALGGVLGL 55 (56)
T ss_pred hHHHhhcccCcHHHHHH-HHHHHHHHHHHhhccc--C----H----HHHHHHHHHHHHHHhccCC
Confidence 67889999999999999 9999999999874321 0 0 1133444556666777875
|
|
| >cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.1 Score=46.11 Aligned_cols=90 Identities=23% Similarity=0.259 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHh
Q 012397 323 LQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSL 402 (464)
Q Consensus 323 ~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~ 402 (464)
+.+.++.+.+.++++++.++. .+. .. ...+..+.+.+.++|+|++++|.|++. |+++++.+|+++
T Consensus 2 e~L~~A~~~l~rl~~~~~~l~-~~~--------~~-----~~~~~~~~~~f~~Al~DDlNt~~Ala~-l~~l~k~~n~~~ 66 (156)
T cd07963 2 DNLEDARAALERLYTALRGVP-PTT--------VD-----IDWGEPFAERFIAAMDDDFNTPEALAV-LFELAREINRLK 66 (156)
T ss_pred hHHHHHHHHHHHHHHHHHhhH-hcc--------cc-----hhhHHHHHHHHHHHHhccCCcHHHHHH-HHHHHHHHHHHh
Confidence 467788888999988887653 110 00 112445668999999999999999999 999999999987
Q ss_pred hhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhccCC
Q 012397 403 NMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLP 439 (464)
Q Consensus 403 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLgi~p 439 (464)
+.. + . .+......+..++.+|||..
T Consensus 67 ~~~-~------~-----~~~~~~~~l~~~~~vLGl~~ 91 (156)
T cd07963 67 KED-I------E-----KAAALAALLKALGGVLGLLQ 91 (156)
T ss_pred ccc-h------H-----HHHHHHHHHHHHHhccCCCC
Confidence 531 1 0 12334455666788999743
|
This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. |
| >cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.22 Score=38.73 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH-HH
Q 012397 323 LQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI-NS 400 (464)
Q Consensus 323 ~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~-n~ 400 (464)
+.+.++.+.+.++++++.++. . + ....+.+++.++|+|++++|.|++. |+++++.+ |+
T Consensus 2 e~L~~A~~~l~rl~~~l~~~~-------~-----~-------~~~~~~~~F~~AL~DDLNTp~Ala~-L~~l~k~i~~~ 60 (81)
T cd07955 2 EVLADAEARLARWRSAVALPD-------G-----P-------DAEALVARLREALADDLDTPKALAA-LDAWAREALSR 60 (81)
T ss_pred hHHHHHHHHHHHHHHHHHhcc-------c-----c-------cHHHHHHHHHHHHHhhCChHHHHHH-HHHHHHHHHhc
Confidence 567788888888887776541 0 0 1235668999999999999999999 99999866 54
|
This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC. |
| >PLN02486 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.64 Score=47.23 Aligned_cols=76 Identities=17% Similarity=0.094 Sum_probs=48.0
Q ss_pred CCcceEEEeCCCCCC-cCCcccchhHHHHHHHHHHHHHC-CCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 012397 37 RGKVGMYVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHL-KCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYL 114 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G-~lHiGHar~~l~~D~laR~lr~~-G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 114 (464)
.|+...+.||--|+| .+||||+-++ ..+. ++... |..+. +.-+|+ .+....+.++++. .++..+..
T Consensus 70 ~~~~~~vYtG~~PSg~~lHlGHlv~~---~~~~-~lQ~~~~~~~~-I~iaD~------e~~~~~~~~~e~i-~~~~~en~ 137 (383)
T PLN02486 70 KGEKFYLYTGRGPSSEALHLGHLIPF---MFTK-YLQDAFKVPLV-IQLTDD------EKFLWKNLSVEES-QRLARENA 137 (383)
T ss_pred cCCCeEEEeCCCCCCccccHHHHHHH---HHHH-HHHHhCCCeEE-EEecCH------HHHhhcCCCHHHH-HHHHHHHH
Confidence 466677889999998 5999994443 4444 55554 55444 445564 2222234565444 45666788
Q ss_pred HHHHhcCCCC
Q 012397 115 VDMADLQCLP 124 (464)
Q Consensus 115 ~~l~~lgi~~ 124 (464)
+++..+|+.+
T Consensus 138 ~~iiA~G~dp 147 (383)
T PLN02486 138 KDIIACGFDV 147 (383)
T ss_pred HHHHHhCCCC
Confidence 8888899874
|
|
| >PRK12556 tryptophanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.081 Score=52.74 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=46.2
Q ss_pred eEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 012397 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (464)
Q Consensus 41 ~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (464)
.++.+|.-|+|.+||||.-.++-- ..+.+...|.++++. -.|.|.. +. ..+++++ +++......++-..
T Consensus 4 ~~v~sGiqPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~-IADlHal---t~----~~~~~~l-~~~~~~~~~~~lA~ 72 (332)
T PRK12556 4 KIMLTGIKPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYF-IADYHAL---NA----VHDPEQF-RSYTREVAATWLSL 72 (332)
T ss_pred CEEEEEECCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEE-Eechhhc---cC----CCCHHHH-HHHHHHHHHHHhhe
Confidence 366788999999999995444321 223344456555433 3443331 10 1255554 34555677788899
Q ss_pred CCCCC-CCCCCcch
Q 012397 121 QCLPP-TYQPRVSD 133 (464)
Q Consensus 121 gi~~~-~~~~r~s~ 133 (464)
|+.+. ..+...|+
T Consensus 73 GlDP~k~~if~qS~ 86 (332)
T PRK12556 73 GLDPEDVIFYRQSD 86 (332)
T ss_pred eecccceEEEECCC
Confidence 99752 13344444
|
|
| >COG1656 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.23 Score=43.59 Aligned_cols=88 Identities=22% Similarity=0.235 Sum_probs=48.4
Q ss_pred HHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHH
Q 012397 67 LYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQII 146 (464)
Q Consensus 67 laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~ 146 (464)
|||+||+.|+++.|.+..+ +..++.-+..+|.=. ...=.+.+... .+|+. ..+.++....+.+.+++.++-
T Consensus 18 LARwLRllGydt~~~~~~~--d~~i~~i~~~e~rIl---lTRDr~L~~r~--k~g~~--~i~i~~~s~~~Ql~e~~~~~~ 88 (165)
T COG1656 18 LARWLRLLGYDTVYSSNES--DDEIILIAKKEGRIL---LTRDRELYKRA--KLGIK--AILIRSDSIEEQLAEFLARLG 88 (165)
T ss_pred HHHHHHHcCCceeeeccCC--cHHHHHHHhcCCeEE---EeccHHHHHHh--hccCc--eEEEeCCCHHHHHHHHHHHhc
Confidence 8999999999999997322 345555565544200 00001112221 35553 445555555566777777665
Q ss_pred HCCceEeecCcEEEcCCCCCCCCC
Q 012397 147 NNDCAYVVEGDVFFAVEKSPNYGR 170 (464)
Q Consensus 147 ~~G~~y~~~~~~~~~~~~~~~~g~ 170 (464)
.++... .....||.|+.
T Consensus 89 l~~~~~-------~e~~RCp~CN~ 105 (165)
T COG1656 89 LKPRLF-------PEFSRCPECNG 105 (165)
T ss_pred cchhcc-------cccccCcccCC
Confidence 544211 12356888874
|
|
| >PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.22 Score=43.58 Aligned_cols=31 Identities=35% Similarity=0.607 Sum_probs=24.8
Q ss_pred HHHHHHHCCCeEEEecCCccccHHHHHHHHHcC
Q 012397 67 LYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLG 99 (464)
Q Consensus 67 laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g 99 (464)
|||+||..|+||.+....+ +..+...|.++|
T Consensus 12 Lar~LR~lG~Dt~~~~~~~--D~~il~~A~~e~ 42 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDID--DDEILELAREEG 42 (147)
T ss_pred HHHHHHHCCCcEEEeCCCC--hHHHHHHhhhCC
Confidence 8999999999999999664 345677777665
|
The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges. |
| >PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=90.92 E-value=1.2 Score=48.75 Aligned_cols=101 Identities=6% Similarity=0.012 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHhcCccccC---CC-----ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q 012397 332 VFYIYQTLQDCEVALSPFQEH---GK-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (464)
Q Consensus 332 l~~l~~~~~~~~~~l~~~~~~---~~-----~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~ 403 (464)
...+..+++|+..++++.... .. .++.|+.|...+.++...+..++ ..-++..++.. |.++...++.||+
T Consensus 568 ~~~l~~~~kRv~NIl~k~~~~~~~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~-~~~~y~~~l~~-l~~L~~~Id~FFD 645 (682)
T PRK01233 568 FKALAAANKRVSNILKKAEGKVSGEVDPALFEEPAEKALYAALEELKPKVEPAL-AAGDYQAALEA-LAALRPPVDAFFD 645 (682)
T ss_pred HHHHHHHHHHHHHHHhccccccCCccChhHcCCHHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHH-HHhhhhHHHHHhC
Confidence 557888889998888765321 11 25677888888888888888888 67788999999 9999999999999
Q ss_pred hhcccCc-hhhhhhHHHHHHHHHHHHHHHHHh
Q 012397 404 MLKKKQP-KQQQLSLIESLRKIENEVKEVLRI 434 (464)
Q Consensus 404 ~~~~~~~-~~~~~~r~~~~~~~~~~l~~~l~l 434 (464)
...+..+ .+....|+.++..+...+..+..+
T Consensus 646 ~VmVm~~d~~iR~NRL~LL~~i~~~f~~iaDf 677 (682)
T PRK01233 646 NVMVMAEDEALRANRLALLASLRELFLRVADF 677 (682)
T ss_pred CCeeeCCCHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 8887654 445678999988888877665543
|
|
| >COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.25 E-value=1.8 Score=46.67 Aligned_cols=101 Identities=8% Similarity=0.053 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhcCcccc---CCC-----ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q 012397 332 VFYIYQTLQDCEVALSPFQE---HGK-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (464)
Q Consensus 332 l~~l~~~~~~~~~~l~~~~~---~~~-----~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~ 403 (464)
...+..++.|+..++.+..+ ..+ ..+.|+.|...+..+...+.+++ ..-++..++.. |.++..-+..||+
T Consensus 577 ~~~l~~a~kRv~nIl~k~~~~~~~~v~~~Lf~~~~E~~L~~a~~~~~~~~~~a~-a~~~y~~al~~-L~~L~~pId~FFd 654 (691)
T COG0751 577 AKALAAANKRVSNILAKAEKKLSGTVDPSLFEEDAEKALFEALQALKPKVAEAL-AEKDYQDALAA-LAELRPPIDEFFD 654 (691)
T ss_pred hHHHHHHHHHHHHHHHhcccccCCccChHHhcCHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHH-HHHhhhhHHHHhc
Confidence 44666788888888876653 111 25677889999999999999999 67788999999 9999999999999
Q ss_pred hhcccCc-hhhhhhHHHHHHHHHHHHHHHHHh
Q 012397 404 MLKKKQP-KQQQLSLIESLRKIENEVKEVLRI 434 (464)
Q Consensus 404 ~~~~~~~-~~~~~~r~~~~~~~~~~l~~~l~l 434 (464)
...+..+ .+.+..|++++..+...+..+..+
T Consensus 655 ~VmVm~eD~~iR~NRLalL~~l~~~f~~vAd~ 686 (691)
T COG0751 655 NVMVMAEDEALRNNRLALLSKLRELFLKVADF 686 (691)
T ss_pred CceeeCCCHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9877653 345678999888888777665443
|
|
| >TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit | Back alignment and domain information |
|---|
Probab=90.07 E-value=1.4 Score=48.20 Aligned_cols=100 Identities=6% Similarity=-0.031 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhcCccccC---CC-----ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q 012397 332 VFYIYQTLQDCEVALSPFQEH---GK-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (464)
Q Consensus 332 l~~l~~~~~~~~~~l~~~~~~---~~-----~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~ 403 (464)
...+..+++|+..++.+.... .. ..+.|+.|...+..+...+...+ ..-++..++.. |..+...++.||+
T Consensus 578 ~~~l~~a~kRv~NIl~k~~~~~~~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~-~~~~y~~~l~~-l~~L~~~Id~FFD 655 (691)
T TIGR00211 578 AEALAAANKRVANILKKGNPVLSSEIQANLFKEPKEKALFEAVLAIKMNAQESF-ESGDYETALEA-LAELRAPVDEFFD 655 (691)
T ss_pred HHHHHHHHHHHHHHHhcccccccCccChhHcCCHHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHH-HHHhhhHHHHHhC
Confidence 557888889998888775321 11 14567788888888777777777 56688899999 9999999999999
Q ss_pred hhcccCc-hhhhhhHHHHHHHHHHHHHHHHH
Q 012397 404 MLKKKQP-KQQQLSLIESLRKIENEVKEVLR 433 (464)
Q Consensus 404 ~~~~~~~-~~~~~~r~~~~~~~~~~l~~~l~ 433 (464)
...+..+ .+....|++++..+...+..+..
T Consensus 656 ~VmVm~~d~~iR~NRL~LL~~i~~lf~~iaD 686 (691)
T TIGR00211 656 SVMVMADDIELRQNRLNFLWGLRQLFLEVAD 686 (691)
T ss_pred CCEeeCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9888654 44567899998888887766544
|
The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model. |
| >PRK12282 tryptophanyl-tRNA synthetase II; Reviewed | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.62 Score=46.53 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=44.2
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
++.+|--|+|.+||||.-.++. -.+.+...|. + ++.-.|.|.. .. ...+++++. ++..+...++..+|
T Consensus 4 ~v~sG~~PTG~~HLGn~l~~~~---~~~~lQ~~~~-~-~i~IaD~ha~--~~----~~~~~~~i~-~~~~~~~~~~lA~G 71 (333)
T PRK12282 4 IILTGDRPTGKLHLGHYVGSLK---NRVALQNEHE-Q-FVLIADQQAL--TD----NAKNPEKIR-RNILEVALDYLAVG 71 (333)
T ss_pred EEEEeeCCCCcchHHHHHHHHH---HHHHHHhCCC-E-EEEEccchhH--hC----CCCCHHHHH-HHHHHHHHHHHHhC
Confidence 5678889999999999655432 2225555675 4 4555776632 11 123554444 45556777788899
Q ss_pred CCC
Q 012397 122 CLP 124 (464)
Q Consensus 122 i~~ 124 (464)
+.+
T Consensus 72 ~dp 74 (333)
T PRK12282 72 IDP 74 (333)
T ss_pred cCh
Confidence 874
|
|
| >PRK12284 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=88.94 E-value=0.38 Score=49.29 Aligned_cols=80 Identities=16% Similarity=0.056 Sum_probs=45.8
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
.+.+|..|+|.|||||.-.++.- ..+.+...|+++++. -.|-|-. . ...+|+++.+. ..++..++-..|
T Consensus 4 rvlSGiqPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~-IADlHAl---T----~~~dp~~lr~~-~~e~aa~~LA~G 72 (431)
T PRK12284 4 RVLTGITTTGTPHLGNYAGAIRP--AIAASRQPGVESFYF-LADYHAL---I----KCDDPARIQRS-TLEIAATWLAAG 72 (431)
T ss_pred EEEEEecCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEE-eechhhc---c----CCCCHHHHHHH-HHHHHHHHHHhC
Confidence 46788999999999995454321 223334458886543 3333321 1 02345544443 344777888899
Q ss_pred CCCCC-CCCCcc
Q 012397 122 CLPPT-YQPRVS 132 (464)
Q Consensus 122 i~~~~-~~~r~s 132 (464)
+.+.- .+.+.|
T Consensus 73 lDPek~~if~QS 84 (431)
T PRK12284 73 LDPERVTFYRQS 84 (431)
T ss_pred CCccceEEEECC
Confidence 98421 344444
|
|
| >PRK14908 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.30 E-value=4.2 Score=46.08 Aligned_cols=99 Identities=10% Similarity=0.072 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhcCccccCCC-----ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhc
Q 012397 332 VFYIYQTLQDCEVALSPFQEHGK-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 406 (464)
Q Consensus 332 l~~l~~~~~~~~~~l~~~~~~~~-----~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~ 406 (464)
...+..+++|+..++.+...... ..+.|+.|.+.+.++...+... +-++..++.. |.++...++.||+...
T Consensus 893 ~~~l~~a~kRv~NIl~k~~~~~vd~~Lf~~~~E~~L~~a~~~~~~~~~~~---~~dy~~al~~-La~L~~~Id~FFD~Vm 968 (1000)
T PRK14908 893 FAEIAAALNRLKRILASLSFSVTDASLLLEPAELNLKQALDAFREELTEL---PIDLKDYVAA-AAELPQAVNTFFDEVL 968 (1000)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccChhhcCCHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHH-HHhhhhHHHHHhCCCE
Confidence 55788888999888877542111 2455667776666665555544 2267789999 9999999999999988
Q ss_pred ccCc-hhhhhhHHHHHHHHHHHHHHHHHh
Q 012397 407 KKQP-KQQQLSLIESLRKIENEVKEVLRI 434 (464)
Q Consensus 407 ~~~~-~~~~~~r~~~~~~~~~~l~~~l~l 434 (464)
+..+ .+.+..|+.++..+...+..+..+
T Consensus 969 Vm~eD~~iR~NRLaLL~~i~~lf~~vaDf 997 (1000)
T PRK14908 969 VMADDEAIRNARLGLLAAIRDLKFGVLDW 997 (1000)
T ss_pred eeCCCHHHHHHHHHHHHHHHHHHHhhcch
Confidence 8654 445678999988888877665443
|
|
| >PRK00927 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=84.30 E-value=0.52 Score=47.09 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=40.5
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
.+.+|--|+|.+||||.-..+. -+.++++ ++++.+.- .|.|.. + . ..++++ ...+...+..++-.+|
T Consensus 3 ~v~~G~~PTG~lHLG~~~g~~~--~~~~lQ~--~~~~~~~I-aD~ha~-t--~----~~~~~~-i~~~~~~~~~~~lA~G 69 (333)
T PRK00927 3 RVLSGIQPTGKLHLGNYLGAIK--NWVELQD--EYECFFCI-ADLHAL-T--V----PQDPEE-LRENTRELAADYLACG 69 (333)
T ss_pred EEEEeeCCCccchHHhHHHHHH--HHHHHHh--cCCeEEEE-ecHHHH-h--C----CCCHHH-HHHHHHHHHHHHHeEc
Confidence 4567888999999999655542 2344443 36665443 232221 1 0 123333 3345566778888889
Q ss_pred CCC
Q 012397 122 CLP 124 (464)
Q Consensus 122 i~~ 124 (464)
+.+
T Consensus 70 lDp 72 (333)
T PRK00927 70 IDP 72 (333)
T ss_pred cCh
Confidence 874
|
|
| >PLN02486 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=82.36 E-value=0.9 Score=46.16 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=36.9
Q ss_pred eEEEecccCccccchHHHHHHhh--ccCCCCccEEEEeeeee-eCC--cccccccCC-ccCHHHHHHhcCchhHHHHHhh
Q 012397 238 DIHGGGIDLIFPHHENEIAQSCA--ACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQITERYHPLALRHFLIS 311 (464)
Q Consensus 238 ~i~~~G~D~~~~h~~~~~a~~~a--~~~~~~~~~~~~~~~v~-~~G--~KmSks~gn-~i~~~dll~~~~~dalR~~ll~ 311 (464)
.+...|.|+- +|.. .++-.| .+...|. .+|+.++. +.| +|||||.+| .|.+.| +++.++=-+.+
T Consensus 221 ~lVPvG~DQd-~~~~--ltRdia~r~~~~kp~--~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 290 (383)
T PLN02486 221 CLIPCAIDQD-PYFR--MTRDVAPRLGYYKPA--LIESRFFPALQGESGKMSASDPNSAIYVTD-----TPKEIKNKINK 290 (383)
T ss_pred ceeecccchH-HHHH--HHHHHHHHhCCCCcc--eeccccccCCCCCCCcCcCcCCCCeeeccC-----CHHHHHHHHhc
Confidence 5667788853 2332 333333 2333333 24445554 355 699999988 688877 66666655544
|
|
| >PRK12283 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=80.19 E-value=0.59 Score=47.43 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=43.9
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHH-CCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~-~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (464)
.+.+|.-|+|.+||||.-.++ ..|..+ .|+++ +++-.|.|-.-. ...++.++ ..+...+...+-.+
T Consensus 4 ~v~sGiqPSG~~HLGnylG~i-----k~wv~lq~~~~~-~~~IADlHAlt~------~~~d~~~i-r~~~~~~~a~~lA~ 70 (398)
T PRK12283 4 RVLSGMRPTGRLHLGHYHGVL-----KNWVKLQHEYEC-FFFVADWHALTT------HYETPEVI-EKNVWDMVIDWLAA 70 (398)
T ss_pred EEEEEeCCCCcchHHHHHHHH-----HHHHHHhcCCcE-EEEeecHHHHhC------CCCCHHHH-HHHHHHHHHHHHHc
Confidence 577889999999999965553 344443 56665 455555443211 11244433 34556688889999
Q ss_pred CCCC
Q 012397 121 QCLP 124 (464)
Q Consensus 121 gi~~ 124 (464)
|+.+
T Consensus 71 GlDP 74 (398)
T PRK12283 71 GVDP 74 (398)
T ss_pred CCCc
Confidence 9974
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 464 | ||||
| 1li5_A | 461 | Crystal Structure Of Cysteinyl-Trna Synthetase Leng | 1e-101 | ||
| 3tqo_A | 462 | Structure Of The Cysteinyl-Trna Synthetase (Cyss) F | 1e-93 | ||
| 3c8z_A | 414 | The 1.6 A Crystal Structure Of Mshc: The Rate Limit | 1e-53 | ||
| 3sp1_A | 501 | Crystal Structure Of Cysteinyl-Trna Synthetase (Cys | 1e-45 |
| >pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase Length = 461 | Back alignment and structure |
|
| >pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From Coxiella Burnetii Length = 462 | Back alignment and structure |
|
| >pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting Enzyme In The Mycothiol Biosynthetic Pathway Length = 414 | Back alignment and structure |
|
| >pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461 | Back alignment and structure |
|---|
Score = 646 bits (1669), Expect = 0.0
Identities = 187/422 (44%), Positives = 248/422 (58%), Gaps = 29/422 (6%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKI+N++T+QKE F PI G+VGMYVCG+T YDL H+GH R V+FD++ RYL L ++
Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKL 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YVRN TD+DDKII+RAN+ GE+ +++ +R E D L L P +PR + H+ +I
Sbjct: 62 KYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEI 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
++ Q+I AYV + GDV F V P YG LS Q L+ +AG RV V KRNP DF
Sbjct: 122 IELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEPSW SPWG GRPGWHIECSAM+ L + FDIHGGG DL+FPHHENEIAQ
Sbjct: 182 VLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S A V+YWMH+G V + EKMSKSLGNFFT+R + + Y +R+FL+S HYRS
Sbjct: 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS L A A+ +Y L+ + ++P F M
Sbjct: 302 LNYSEENLKQARAALERLYTALRGTDKTVAPAGG---------------EAFEARFIEAM 346
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F D + +N + + + + ++++ +LGL
Sbjct: 347 DDDFNTPEAYSVLF-DMAREVNRLKA------------EDMAAANAMASHLRKLSAVLGL 393
Query: 438 LP 439
L
Sbjct: 394 LE 395
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462 | Back alignment and structure |
|---|
Score = 643 bits (1661), Expect = 0.0
Identities = 182/423 (43%), Positives = 249/423 (58%), Gaps = 29/423 (6%)
Query: 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCE 77
++KI+NS+T+QKE+F PI GKV +YVCG+T YD H+GH R+ + FD++ RYL E
Sbjct: 4 SVKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYE 63
Query: 78 VTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQ 137
VT+VRN TD+DDKII+RA + E+P +L+ R+ Q D L+ L P +PR + ++ +
Sbjct: 64 VTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPE 123
Query: 138 IKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I +I ++++N AY + GDVFF V + +YG+LS + L+ +AG RV V KR+P D
Sbjct: 124 IIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLD 183
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
F LWK AK GEP WDSPWG GRPGWHIECSAMS+ L FDIHGGG+DL FPHHENEIA
Sbjct: 184 FVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIA 243
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A + V WMH G + N EKMSKSLGN +IR+ + LR+FL+S HYR+
Sbjct: 244 QSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRN 303
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
PL+YS L++ A+ Y L+ + + + D F+
Sbjct: 304 PLSYSKENLENGRLALERFYLALRG----------------LPVVNHEKTSSYTDRFYEA 347
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 436
M DD NT F + ++ IN + + IE + E+K + I G
Sbjct: 348 MDDDFNTPIAFALLF-EMVREINRFRDN-----------NQIEKAAVLAAELKCLGNIFG 395
Query: 437 LLP 439
LL
Sbjct: 396 LLQ 398
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501 | Back alignment and structure |
|---|
Score = 610 bits (1575), Expect = 0.0
Identities = 125/446 (28%), Positives = 198/446 (44%), Gaps = 23/446 (5%)
Query: 9 TVAAPKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLY 68
T M LK+YN+ T+ T V +Y CG T Y+ +H+G+ R + DLL
Sbjct: 16 TQGPGSM--ILKLYNTRTKDFSELTNF--ENVKVYACGPTVYNYAHIGNFRTYIFGDLLI 71
Query: 69 RYLEHLKCEVTYVRNFTDV----------DDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118
+ L L +V Y N TD+ +DK+ + A + G +S + + + D
Sbjct: 72 KTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFNDCR 131
Query: 119 DLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLEN 178
L + P S H+ + +++ + Y G+V+F +YG ++G L +
Sbjct: 132 KLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLID 191
Query: 179 -NRAGERVAVDSRKRNPADFALW---KAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLS 234
+ RV VD KRN DF LW K E WDSPWG G P WH+EC+AM+ Y
Sbjct: 192 KDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFK 251
Query: 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIR 294
DIH GG+D I HH NEIA + ++H + + KMSKS GNF T++
Sbjct: 252 DALDIHLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVK 311
Query: 295 QITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG 353
+ ++ + PL R+ +++HYR+ L +S+ L ++ A + L +L P +
Sbjct: 312 DLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNT 371
Query: 354 KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ 413
+ + D F ++S DLN + L + + +K N S K
Sbjct: 372 LNKDLKNFGFSVEKEYYDSFVEKISFDLNVAQGLALLW-EIIKSDNLSFV---SKLRLAF 427
Query: 414 QLSLIESLRKIENEVKEVLRILGLLP 439
I SL E +K + ++
Sbjct: 428 IFDEIMSLNLREEILKNLQNHDVVID 453
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414 | Back alignment and structure |
|---|
Score = 554 bits (1429), Expect = 0.0
Identities = 127/413 (30%), Positives = 191/413 (46%), Gaps = 32/413 (7%)
Query: 1 MEASKETGTVAAPKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARA 60
M++ P L++++S +Q TP MYVCG+T YD +HLGHA
Sbjct: 3 MQSWSAPAIPVVPGRGPALRLFDSADRQVRPVTPG--PTATMYVCGITPYDATHLGHAAT 60
Query: 61 AVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120
++FDL++R V YV+N TDVDD + RA G + +L +R Q + DMA L
Sbjct: 61 YLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAAL 120
Query: 121 QCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSPNYGRLSGQRL 176
+ LPP +D + ++ +M+ +++ + AY+VE DV+F + + +G SG
Sbjct: 121 RVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDR 180
Query: 177 ENNRAGERVAVD----SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHY 232
+ K + D LW+A + GEPSW SP+G GRPGWH+ECSA++
Sbjct: 181 DTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTR 240
Query: 233 LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN-VSYWMHNGHVTNNNEKMSKSLGNFF 291
+ + DI GGG DLIFPHHE A + + + +++H G + + KMSKS GN
Sbjct: 241 IGTGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLV 300
Query: 292 TIRQI-TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ 350
+ Q+ + P A+R L S HYR +S LD A+ + E
Sbjct: 301 LVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDEANARLARWRSATALPEA------ 354
Query: 351 EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403
P A D + ++DDL+T L S
Sbjct: 355 ---------PDATD----VIARVRQYLADDLDTPKALAALD-GWCTDALSYGG 393
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 3e-09
Identities = 36/204 (17%), Positives = 67/204 (32%), Gaps = 20/204 (9%)
Query: 212 SPWGPGRPGWHIECSAMS---AHYLSSKF------DIHGGGIDLIFPHHENEIAQSCA-A 261
+ + + + + H + +F D G DLI H I A
Sbjct: 570 EEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIF 629
Query: 262 CQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNY 320
++ NG T +KMSKS GN E +R +++S + S ++
Sbjct: 630 REEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDW 689
Query: 321 SVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSD- 379
++ + Y+ + + A + + + I+ +NK E + +
Sbjct: 690 RRKEVGKLRKQIERFYELIS--QFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEF 747
Query: 380 DLNTSHILTGAFQDALKFINSSLN 403
T A Q A I + L
Sbjct: 748 RTRT------AVQWAFYSIMNDLR 765
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 1e-07
Identities = 60/441 (13%), Positives = 115/441 (26%), Gaps = 136/441 (30%)
Query: 97 DLGENPLSLSNRYCQEYLVD--MADLQC------LPPTYQPRVSDHMEQIKDMITQ---- 144
D + D + + C DH+ KD ++
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 145 --IINNDCAYVVEGDVFFAVEKSPNYGRLSGQ-RLENNRAGERVAVDSRKRNPADFALWK 201
+ + +V+ F NY L + E + + +R+ L+
Sbjct: 68 FWTLLSKQEEMVQ--KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR----LY- 120
Query: 202 AAKAGEPSWDSPWGPGRPGWHIE-----CSAMSAHYLSSKFDIHG-GGIDLIFPHHENEI 255
+ + + R +++ A + I G G
Sbjct: 121 ----NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL----IDGVLGS----------- 161
Query: 256 AQSC---AACQDSNVS-------YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLA- 304
++ C V +W++ + + + + L QI + +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-EMLQKLL--YQIDPNWTSRSD 218
Query: 305 ---------------LRHFLISAHYRSPLNYSVLQLDSASDA----VFYIY-QTL---QD 341
LR L S Y + L L L + +A F + + L +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCL----LVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 342 CEVALS--------PFQEHGKTARINPAAED----CIN----KLRDE-----------FH 374
+V +H + ++ L E
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 375 ARMSDDLNTSHILTGAFQDAL-KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLR 433
+ D L T D L I SSLN+L+ E +++
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE------------------PAEYRKMFD 376
Query: 434 ILGLLPPGAYSEVKTAFLVLL 454
L + PP A+ + T L L+
Sbjct: 377 RLSVFPPSAH--IPTILLSLI 395
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 6e-07
Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 17/169 (10%)
Query: 271 MHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI-SAHYRSPLNYSVLQLDSAS 329
NG T +KMSKS GN E +R +++ A + S ++ ++
Sbjct: 639 AVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLR 698
Query: 330 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFH---ARMSDDLNTSHI 386
+ Y+ + F E+ + D + + ++ L
Sbjct: 699 KQIERFYELISQ-------FAEYEVKGNVELKDID--RWMLHRLNKAIKETTNALEEFRT 749
Query: 387 LTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 435
T A Q A I + L ++ + + LR + +R++
Sbjct: 750 RT-AVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTL---ADVWVRLM 794
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 8e-06
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 274 GHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310
G T +KMSK+LGN ++ + Y +R+FL+
Sbjct: 287 GWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLL 323
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 274 GHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310
G T +++K+SKSLGN F + + + AL++FL+
Sbjct: 331 GWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLM 367
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 274 GHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310
G + N EKMSKS+GN ++ ERY LR+FL+
Sbjct: 313 GFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLM 349
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 274 GHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310
G + N EKMSKS+GN + + + +R+FL+
Sbjct: 302 GWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLL 338
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 274 GHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310
G + + KMSK+LGN + E+Y ALR++L+
Sbjct: 288 GFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLL 325
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 273 NGHVTNNN-EKMSKSLGNFFTIRQITERYHPLALRHFLI-SAHYRSPLNYS 321
+G + + +KMSKS GN I ++ ALR ++ SA + +
Sbjct: 581 HGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFG 631
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| 3tqo_A | 462 | Cysteinyl-tRNA synthetase; protein synthesis, liga | 100.0 | |
| 3sp1_A | 501 | Cysteinyl-tRNA synthetase; structural genomics, se | 100.0 | |
| 1li5_A | 461 | Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys | 100.0 | |
| 3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossma | 100.0 | |
| 3u1f_A | 542 | Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta | 100.0 | |
| 4dlp_A | 536 | Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA | 100.0 | |
| 2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structura | 100.0 | |
| 3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacy | 100.0 | |
| 3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRN | 100.0 | |
| 1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerizati | 100.0 | |
| 2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A | 100.0 | |
| 2x1l_A | 524 | Methionyl-tRNA synthetase; nucleotide-binding, pro | 100.0 | |
| 1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, | 100.0 | |
| 1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, me | 100.0 | |
| 1ile_A | 821 | Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s | 100.0 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 100.0 | |
| 2zue_A | 629 | Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase | 100.0 | |
| 1iq0_A | 592 | Arginyl-tRNA synthetase; riken structural genomics | 100.0 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e | 100.0 | |
| 1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural g | 100.0 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 100.0 | |
| 1f7u_A | 607 | Arginyl-tRNA synthetase; RNA-protein complex, amin | 100.0 | |
| 3fnr_A | 464 | Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX | 100.0 | |
| 1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin | 100.0 | |
| 1qtq_A | 553 | GLNRS, protein (glutaminyl-tRNA synthetase); gluta | 99.93 | |
| 3aii_A | 553 | Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta | 99.93 | |
| 2hz7_A | 851 | Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c | 99.92 | |
| 2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s | 99.89 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T- | 99.87 | |
| 2o5r_A | 481 | Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g | 99.83 | |
| 4g6z_A | 490 | Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, | 99.78 | |
| 1j09_A | 468 | Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r | 99.78 | |
| 3al0_C | 592 | Glutamyl-tRNA(Gln) amidotransferase subunit C, GL | 99.76 | |
| 3afh_A | 488 | Glutamyl-tRNA synthetase 2; protein-substrate comp | 99.76 | |
| 4gri_A | 512 | Glutamate--tRNA ligase; structural genomics, seatt | 99.72 | |
| 2ja2_A | 498 | Glutamyl-tRNA synthetase; non-discriminating gluta | 99.71 | |
| 2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural | 98.68 | |
| 2g36_A | 340 | Tryptophanyl-tRNA synthetase; TM0492, structural g | 98.14 | |
| 2dlc_X | 394 | Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas | 98.02 | |
| 2zp1_A | 314 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 97.98 | |
| 1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalyti | 97.92 | |
| 2cya_A | 364 | Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st | 97.88 | |
| 2el7_A | 337 | Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth | 97.79 | |
| 3hzr_A | 386 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str | 97.7 | |
| 3tzl_A | 322 | Tryptophanyl-tRNA synthetase; structural genomics, | 97.65 | |
| 3vgj_A | 373 | Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; | 97.55 | |
| 3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphospha | 97.5 | |
| 3hv0_A | 393 | Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin | 97.5 | |
| 3i05_A | 395 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP | 97.39 | |
| 3prh_A | 388 | Tryptophanyl-tRNA synthetase; TRPRS, protein biosy | 97.28 | |
| 2cyc_A | 375 | Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy | 97.27 | |
| 1i6k_A | 328 | TRPRS, tryptophanyl-tRNA synthetase; class I tRNA | 97.25 | |
| 3tze_A | 406 | Tryptophanyl-tRNA synthetase; structural genomics, | 97.16 | |
| 2j5b_A | 348 | Tyrosyl-tRNA synthetase; ligase, protein biosynthe | 97.08 | |
| 3p0j_A | 690 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 97.0 | |
| 2ip1_A | 432 | Tryptophanyl-tRNA synthetase; rossmann fold, struc | 96.91 | |
| 1r6t_A | 477 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 96.87 | |
| 1y42_X | 392 | Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR | 95.98 | |
| 2yxn_A | 322 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 95.92 | |
| 1h3f_A | 432 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy | 95.83 | |
| 1jil_A | 420 | Tyrrs, tyrosyl-tRNA synthetase; truncation, based | 95.76 | |
| 2pid_A | 356 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 95.61 | |
| 2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, ami | 95.54 | |
| 2ts1_A | 419 | Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 | 95.45 | |
| 1yi8_B | 351 | Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. | 93.14 | |
| 3a04_A | 372 | Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR | 92.26 | |
| 2yy5_A | 348 | Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt | 92.14 | |
| 1r6u_A | 437 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 90.32 | |
| 3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, | 87.1 | |
| 3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, | 85.84 | |
| 1y42_X | 392 | Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR | 85.09 | |
| 2pid_A | 356 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 83.82 | |
| 2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, ami | 83.39 | |
| 1yi8_B | 351 | Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. | 83.33 | |
| 1r6u_A | 437 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 81.42 |
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-83 Score=649.88 Aligned_cols=395 Identities=46% Similarity=0.774 Sum_probs=352.8
Q ss_pred ceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH
Q 012397 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND 97 (464)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~ 97 (464)
+|+||||+||++++|.|..+++|.+|+|||||||.+||||+|+++++|+++|++|++|++|.|+.|+||+|+||+.+|++
T Consensus 4 ~l~~yntlt~~ke~f~p~~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~ 83 (462)
T 3tqo_A 4 SVKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGE 83 (462)
T ss_dssp CCEEEETTTTEEEECCCSSTTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHH
T ss_pred eEEEEEcCCCceeccccCCCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEee-cCcEEEcCCCCCCCCCCCCccc
Q 012397 98 LGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRL 176 (464)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~-~~~~~~~~~~~~~~g~l~~~~~ 176 (464)
+|++|++++++|.+.|.+++++|||.+++.++|+|+|++.+++++++|+++|++|+. .+++|||+.+++.||+|++..+
T Consensus 84 ~g~~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~~ 163 (462)
T 3tqo_A 84 NKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHL 163 (462)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTTTTTTTTCSC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccccccccccCCCh
Confidence 999999999999999999999999998788899999999999999999999999998 7899999999999999999999
Q ss_pred cccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHH
Q 012397 177 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256 (464)
Q Consensus 177 ~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a 256 (464)
+++..|.++....+|++|.||++||..++|+|.|+++||.|+|+||++|++|+.+++|.++|||++|.|++||||.+.++
T Consensus 164 ~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHheneia 243 (462)
T 3tqo_A 164 DELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIA 243 (462)
T ss_dssp C------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHH
T ss_pred HHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHHH
Confidence 99988998887888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHH
Q 012397 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIY 336 (464)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~ 336 (464)
++.++.+.+++++|+|+|+++++|+|||||+||+|+|.|++++||+|++|||+++.++.++++|+++.+.++.+.+.+|+
T Consensus 244 qs~a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~a~~~l~rl~ 323 (462)
T 3tqo_A 244 QSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERFY 323 (462)
T ss_dssp HHHHHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHHHHHHHHHHH
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhh
Q 012397 337 QTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 416 (464)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~ 416 (464)
++++++. ... + ..+..+.+.+.++|+|+|++|.|++. |+++++.+|+..+...
T Consensus 324 ~~~~~~~----~~~------~------~~~~~~~~~~~~a~~dD~nt~~a~~~-l~~~~~~~n~~~~~~~---------- 376 (462)
T 3tqo_A 324 LALRGLP----VVN------H------EKTSSYTDRFYEAMDDDFNTPIAFAL-LFEMVREINRFRDNNQ---------- 376 (462)
T ss_dssp HHHTTCC----C------------------CHHHHHHHHHHTBTCCHHHHHHH-HHHHHHHHHHHHHTTC----------
T ss_pred HHHHHhh----hcc------c------hhHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHhhhhcccc----------
Confidence 9876431 110 0 02345678899999889999999999 9999999999865322
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCC
Q 012397 417 LIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 417 r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
...+..+...++.+..+|||.+.
T Consensus 377 -~~~~~~~~~~~~~~~~vlg~~~~ 399 (462)
T 3tqo_A 377 -IEKAAVLAAELKCLGNIFGLLQY 399 (462)
T ss_dssp -HHHHHHHHHHHHHHHGGGTCSCS
T ss_pred -HHHHHHHHHHHHHHHHhcCCCcc
Confidence 11223455677888899997654
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-80 Score=631.58 Aligned_cols=379 Identities=30% Similarity=0.500 Sum_probs=300.6
Q ss_pred CCCcceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCc--------
Q 012397 14 KMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFT-------- 85 (464)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~d-------- 85 (464)
+..-+|+||||+||++++|.|.+ +|++|+|||||||.+||||+|++|++|+++|++|++|++|.|+.|++
T Consensus 19 ~~~m~l~lyntltr~ke~f~p~~--~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~ 96 (501)
T 3sp1_A 19 PGSMILKLYNTRTKDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGD 96 (501)
T ss_dssp ---CCEEEEETTTTEEEEECCCS--CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC---
T ss_pred CCCCeEEEEECCCCccccccccC--cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCC
Confidence 34456999999999999999976 99999999999999999999999999999999999999999997654
Q ss_pred --cccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCC
Q 012397 86 --DVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVE 163 (464)
Q Consensus 86 --d~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~ 163 (464)
+||+||+.+|+++|++|++++++|.+.|.+++++|||.+++..+++++|++.++++|++|+++|++|+.++++|||+.
T Consensus 97 ~DehddKI~~~A~~~g~~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~ 176 (501)
T 3sp1_A 97 LDDGEDKVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTS 176 (501)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGG
T ss_pred CCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCC
Confidence 449999999999999999999999999999999999998777888889999999999999999999999999999999
Q ss_pred CCCCCCCCCCccc-cccccCCCcccCCcccCccccccccc--c-cCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeE
Q 012397 164 KSPNYGRLSGQRL-ENNRAGERVAVDSRKRNPADFALWKA--A-KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDI 239 (464)
Q Consensus 164 ~~~~~g~l~~~~~-~~~~~g~~~~~~~~k~~~~d~~~w~~--~-~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i 239 (464)
+++.||++++..+ +++..|.+++....|++|.||++||. . ..+++.|+++||.|+|+||++|++|+.++||.++||
T Consensus 177 ~f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DI 256 (501)
T 3sp1_A 177 CFKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDI 256 (501)
T ss_dssp GCTTTTTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCE
T ss_pred ccCCccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceE
Confidence 9999999999988 88888888877778999999999987 3 368889999999999999999999999999999999
Q ss_pred EEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHh-cCchhHHHHHhhcCCCCcc
Q 012397 240 HGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPL 318 (464)
Q Consensus 240 ~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~~~~~~ 318 (464)
|++|+|++||||.+++|+++|+++++|.++|+|+||++++|+|||||+||+|+|.|++++ ||+|++|||+++.++++++
T Consensus 257 H~gG~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~~yr~~l 336 (501)
T 3sp1_A 257 HLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQL 336 (501)
T ss_dssp EEEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTSCTTSCE
T ss_pred EeeccccccchHHHHHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhccCCCCC
Confidence 999999999999999999999988899999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCHHHHHHHHHH----HHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Q 012397 319 NYSVLQLDSASDA----VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDA 394 (464)
Q Consensus 319 ~f~~~~~~~~~~~----l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l 394 (464)
+|+++.+.++.+. +.+|+++++++............ ...+ ...+..+.+.+.++|+|+|++|.|++. |+++
T Consensus 337 ~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~f~~am~dDlnt~~al~~-l~~~ 411 (501)
T 3sp1_A 337 KFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNKDL-KNFG---FSVEKEYYDSFVEKISFDLNVAQGLAL-LWEI 411 (501)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCT-TSCS---SHHHHHHHHHHHHHHHBTSCHHHHHHH-HHHH
T ss_pred ccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccccccc-cchh---hhhHHHHHHHHHHHHHhccCcHHHHHH-HHHH
Confidence 9999999999999 77888777654322111000000 0111 234567788999999999999999999 9999
Q ss_pred HHHHH
Q 012397 395 LKFIN 399 (464)
Q Consensus 395 ~~~~n 399 (464)
++.+|
T Consensus 412 ~~~~~ 416 (501)
T 3sp1_A 412 IKSDN 416 (501)
T ss_dssp HHCSS
T ss_pred HHHhc
Confidence 99874
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-79 Score=628.20 Aligned_cols=393 Identities=47% Similarity=0.818 Sum_probs=348.5
Q ss_pred eeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc
Q 012397 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL 98 (464)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~ 98 (464)
|+||||+||++++|.|..++++.+|+|||||||++||||+|++|++|+++|++|++|++|.+++++||+|+||+.+|+++
T Consensus 2 l~~ynt~t~~~~~f~p~~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~ 81 (461)
T 1li5_A 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN 81 (461)
T ss_dssp CEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHT
T ss_pred cEEEeCCCCCccccccCCCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEee-cCcEEEcCCCCCCCCCCCCcccc
Q 012397 99 GENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLE 177 (464)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~-~~~~~~~~~~~~~~g~l~~~~~~ 177 (464)
|.+|++++++|.+.|.+++++|||.+++.++|+|+|++.+++++++|+++|++|+. ++++|||+.+++.||.+++..++
T Consensus 82 g~~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~ 161 (461)
T 1li5_A 82 GESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLD 161 (461)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC---
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccccccccccCCCHH
Confidence 99999999999999999999999997789999999999999999999999999999 89999999999999999998888
Q ss_pred ccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHH
Q 012397 178 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (464)
Q Consensus 178 ~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~ 257 (464)
++.+|+++.....|++|.||++|+..++|+++|+.+||.++|+||++|++|+.++||.++|||++|+|++|||+.+++++
T Consensus 162 ~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq 241 (461)
T 1li5_A 162 QLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241 (461)
T ss_dssp -------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHH
T ss_pred HhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHH
Confidence 88889888877778899999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHH
Q 012397 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQ 337 (464)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~ 337 (464)
+.++.+.+++++|+|+||++++|+|||||+||+|+|.|+++.||+|++|||+++.+++++++|+++.+.++.+.+.++++
T Consensus 242 ~~a~~g~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~l~~~~~~l~rl~n 321 (461)
T 1li5_A 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYT 321 (461)
T ss_dssp HHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99986668889999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhH
Q 012397 338 TLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSL 417 (464)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r 417 (464)
.++++ .. .. .+ | .+.++.+.+.++|+++++++.|++. |+++++.+|+|++. + .
T Consensus 322 ~~~~~----~~----~~-~~-d-----~l~~~~~~~~~am~dd~n~~~Al~~-l~~l~~~~N~~~~~--~------~--- 374 (461)
T 1li5_A 322 ALRGT----DK----TV-AP-A-----GGEAFEARFIEAMDDDFNTPEAYSV-LFDMAREVNRLKAE--D------M--- 374 (461)
T ss_dssp HHTTC----CT----TS-CC-C-----SCHHHHHHHHHHHHBTSCHHHHHHH-HHHHHHHHHHHHHH--C------H---
T ss_pred HHHHh----hc----CC-CH-H-----HHHHHHHHHHHHHHhccCHHHHHHH-HHHHHHHHHHHHhc--c------H---
Confidence 77543 11 01 11 2 3677888999999889999999999 99999999999965 1 0
Q ss_pred HHHHHHHHHHHHHHHHhhccCC
Q 012397 418 IESLRKIENEVKEVLRILGLLP 439 (464)
Q Consensus 418 ~~~~~~~~~~l~~~l~lLgi~p 439 (464)
.++..+...|+.++.+|||..
T Consensus 375 -~~~~~~~~~~~~~~~~lG~~~ 395 (461)
T 1li5_A 375 -AAANAMASHLRKLSAVLGLLE 395 (461)
T ss_dssp -HHHHHHHHHHHHHHTTTTCSC
T ss_pred -HHHHHHHHHHHHHHHHcCCCc
Confidence 244556678888999999854
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-72 Score=569.63 Aligned_cols=365 Identities=34% Similarity=0.542 Sum_probs=319.2
Q ss_pred CCCcceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHH
Q 012397 14 KMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIR 93 (464)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~ 93 (464)
+..++|+||||++++++.|.| ++++.+|+|||||||++||||+|+++++|+++|++|++|++|.+++|+||+|++|+.
T Consensus 16 ~~~~~~~lynt~~~~~~~f~p--~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~ 93 (414)
T 3c8z_A 16 GRGPALRLFDSADRQVRPVTP--GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFE 93 (414)
T ss_dssp SCCCCCEEEETTTTEEEECCC--CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHH
T ss_pred CCCCCcEEEeeccCCcccccC--CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHH
Confidence 557899999999999999998 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeec----CcEEEcCCCCCCCC
Q 012397 94 RANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE----GDVFFAVEKSPNYG 169 (464)
Q Consensus 94 ~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~----~~~~~~~~~~~~~g 169 (464)
+|++.|++|++++++|.+.|.+++++|||+.++.++|+++|.+.+++++++|+++|++|+++ +.+||+.+.++.||
T Consensus 94 ~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g 173 (414)
T 3c8z_A 94 RAERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFG 173 (414)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSSTTTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhhhhhH
Confidence 99999999999999999999999999999855889999999999999999999999999988 88999999999999
Q ss_pred CCCCccccccccC--CC-ccc-CCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEeccc
Q 012397 170 RLSGQRLENNRAG--ER-VAV-DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 245 (464)
Q Consensus 170 ~l~~~~~~~~~~g--~~-~~~-~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D 245 (464)
.+++...+++..+ ++ ++. ...|+++.||++|+...+|++.|+.+||.++|+||++|++|+.++||.++|+|++|+|
T Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D 253 (414)
T 3c8z_A 174 YESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSD 253 (414)
T ss_dssp TTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGG
T ss_pred hhcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEeccc
Confidence 9887655554322 11 222 3347788999999987889999999999999999999999999999999999999999
Q ss_pred CccccchHHHHHHhhccC-CCCccEEEEeeeeeeCCcccccccCCccCHHHHHHh-cCchhHHHHHhhcCCCCccCCCHH
Q 012397 246 LIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVL 323 (464)
Q Consensus 246 ~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~~~~~~~f~~~ 323 (464)
|++||+.++++++.++.+ .+|+++++|+||++++|+|||||+||+|+|.|++++ ||+|++|||+++.++.++++|+++
T Consensus 254 ~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~~~~~d~~fs~~ 333 (414)
T 3c8z_A 254 LIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNE 333 (414)
T ss_dssp GTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHTSCTTSCBCCCHH
T ss_pred cccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEecCcCCCCCcCHH
Confidence 999999999999999854 588889999899999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q 012397 324 QLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINS 400 (464)
Q Consensus 324 ~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~ 400 (464)
.+.++.+.+.+|+++++++ . . + .+.++.+++.++|+++++++.|++. |+++++.+|+
T Consensus 334 ~l~~~~~~l~~l~n~~~~~----~----~----~-------~~~~~~~~v~~a~~d~~~~~~Al~~-i~~~~~~~n~ 390 (414)
T 3c8z_A 334 VLDEANARLARWRSATALP----E----A----P-------DATDVIARVRQYLADDLDTPKALAA-LDGWCTDALS 390 (414)
T ss_dssp HHHHHHHHHHHHHHHHTSS----C----B----S-------CCHHHHHHHHHHHHBTCCHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----c----c----h-------hHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHh
Confidence 9999999999999887543 1 0 1 1256778899999779999999999 9999999999
|
| >3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-65 Score=540.97 Aligned_cols=405 Identities=16% Similarity=0.158 Sum_probs=318.9
Q ss_pred eEEEeC--CCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 41 GMYVCG--VTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 41 ~v~~~~--P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
.+|||+ |.|||.||||||++++++|+++|++|++|++|.|++|+|+||.+|+.+|+++|++|++++++|.+.|.++++
T Consensus 10 ~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~ 89 (542)
T 3u1f_A 10 VFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFE 89 (542)
T ss_dssp CEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 445555 455599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCCCCCccccccccCCC
Q 012397 119 DLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRLSGQRLENNRAGER 184 (464)
Q Consensus 119 ~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~l~~~~~~~~~~g~~ 184 (464)
+|||++ |.+.||+ +|.+.++++|.+|+++|++|++.+.++||+.| |+.||...+ ....+|..
T Consensus 90 ~lgi~~-D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~---~~~~sg~~ 165 (542)
T 3u1f_A 90 QMDYSI-DYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCK---VSLESGHV 165 (542)
T ss_dssp HHTCCC-SEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEE---EETTTCCB
T ss_pred HhCCcc-CcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCcccc---ccCCCCCc
Confidence 999995 7777776 68899999999999999999999999999874 334442110 00011222
Q ss_pred ccc----------CCc--------ccCccccccccc------------ccCCCCcccC----CCCCCCCc--------hh
Q 012397 185 VAV----------DSR--------KRNPADFALWKA------------AKAGEPSWDS----PWGPGRPG--------WH 222 (464)
Q Consensus 185 ~~~----------~~~--------k~~~~d~~~w~~------------~~~g~~~~~~----~wg~~~P~--------w~ 222 (464)
++. ... +.++ ++..|.. ..+..++|+. .||+++|. |+
T Consensus 166 ve~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~vw~ 244 (542)
T 3u1f_A 166 VTWVSEENYMFRLSAFRERLLEWYHANP-GCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWL 244 (542)
T ss_dssp EEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHH
T ss_pred ceeeccccceecchhHHHHHHHHHhhcc-cccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeeeee
Confidence 111 000 0011 1111110 1233344443 59999995 76
Q ss_pred hHHHHH-HH-------------------hhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcc
Q 012397 223 IECSAM-SA-------------------HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEK 282 (464)
Q Consensus 223 ~~~~~~-~~-------------------~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~K 282 (464)
++.... .. ....+|.|+|++|+|+++||+.+|++++++.+.+++..+ ++|||++.+|+|
T Consensus 245 da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v-~~hg~l~~~G~K 323 (542)
T 3u1f_A 245 DALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLPLPKKI-VAHGWWTKDRKK 323 (542)
T ss_dssp HHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCE-EEECCCEETTBC
T ss_pred ccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhhccccccee-ccccceecCCce
Confidence 654221 10 112358899999999999999999999998876666655 667999999999
Q ss_pred cccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccC----CCc
Q 012397 283 MSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEH----GKT 355 (464)
Q Consensus 283 mSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~~~~~----~~~ 355 (464)
||||+||+|+|.|++++||+|++|||+++. ++++|++|+++.+.+..|. ..+|+|.+.|+.+...+.... ...
T Consensus 324 MSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~~~ 403 (542)
T 3u1f_A 324 ISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAY 403 (542)
T ss_dssp CBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCC
T ss_pred eccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCCCCccchh
Confidence 999999999999999999999999999985 8999999999999887764 456677776766544333211 122
Q ss_pred cCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHH-HHHHHHHHHHHHHHHh
Q 012397 356 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI-ESLRKIENEVKEVLRI 434 (464)
Q Consensus 356 ~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~-~~~~~~~~~l~~~l~l 434 (464)
.+.|++++++++++.+++.++| ++++++.|++. |++|++.+|+|++..+||...+++..|+ .++.++.++|+.++.+
T Consensus 404 ~~~d~~il~~l~~~~~~~~~~~-~~~~~~~a~~~-i~~~~~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~l 481 (542)
T 3u1f_A 404 TEEDESLIQLIKDLPGTADHYY-LIPDIQKAIIA-VFDVLRAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLL 481 (542)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999 99999999999 9999999999999999997655444444 4568888999999999
Q ss_pred hc-cCCCccHHHHHHHhhhhH
Q 012397 435 LG-LLPPGAYSEVKTAFLVLL 454 (464)
Q Consensus 435 Lg-i~p~~~~e~i~~~l~~~~ 454 (464)
|+ |+|+ +||+||++|+.+.
T Consensus 482 l~P~~P~-~aeei~~~Lg~~~ 501 (542)
T 3u1f_A 482 LSPILPR-KSVVIFDMLGVPE 501 (542)
T ss_dssp HTTTSHH-HHHHHHHHHTCCG
T ss_pred HHhHhHH-HHHHHHHHCCCCC
Confidence 99 9998 9999999998654
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-65 Score=537.50 Aligned_cols=413 Identities=19% Similarity=0.177 Sum_probs=311.3
Q ss_pred ecccCCCCcceEEEeCCCCC--CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHH
Q 012397 31 LFTPIVRGKVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNR 108 (464)
Q Consensus 31 ~~~~~~~~~~~v~~~~P~p~--G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~ 108 (464)
++.|.+-++..+|+|+|+|| |++||||+|+++++|+++|++|++|++|.+++|+||||.+|+.+|++.|.+|++++++
T Consensus 16 ~~~~~~~~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~ 95 (536)
T 4dlp_A 16 TQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADR 95 (536)
T ss_dssp --------CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHH
T ss_pred ccCCCcCCCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHH
Confidence 34444434557899998888 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-----------------CCCCC
Q 012397 109 YCQEYLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-----------------SPNYG 169 (464)
Q Consensus 109 ~~~~~~~~l~~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-----------------~~~~g 169 (464)
+.+.|.+++++|||++ |.+.+++ +|.+.+++++.+|.++|++|++++.+|||+.| |+.||
T Consensus 96 ~~~~~~~~l~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g 174 (536)
T 4dlp_A 96 NTSAFRRMAEVLNSSN-DDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQG 174 (536)
T ss_dssp HHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTS
T ss_pred HHHHHHHHHHHcCCCC-CcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCC
Confidence 9999999999999996 6777777 48999999999999999999999999999864 22333
Q ss_pred CCCCccccccccCCC-cccCCc--------ccCccccc----------cccc--ccCCCCccc-CCCCCCCCc-------
Q 012397 170 RLSGQRLENNRAGER-VAVDSR--------KRNPADFA----------LWKA--AKAGEPSWD-SPWGPGRPG------- 220 (464)
Q Consensus 170 ~l~~~~~~~~~~g~~-~~~~~~--------k~~~~d~~----------~w~~--~~~g~~~~~-~~wg~~~P~------- 220 (464)
. .++....... +.+... +.++ ++. -|.. .++-.++|. .+||+++|.
T Consensus 175 ~----~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~y 249 (536)
T 4dlp_A 175 T----PVEWVEEESYFFRLSAYQDKLLDLYENNP-GFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMY 249 (536)
T ss_dssp S----BCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEEC
T ss_pred C----cceEEeccceEEecHHHHHHHHHHHHhCC-CccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceE
Confidence 2 1100000000 000000 0111 111 1211 122235664 579999994
Q ss_pred -hhhHHHHHHH--hh--------cCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCC
Q 012397 221 -WHIECSAMSA--HY--------LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGN 289 (464)
Q Consensus 221 -w~~~~~~~~~--~~--------~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn 289 (464)
|+++...+.. .+ -.+|.+++++|+||++||+.+|++++++++.++|..+++ ||||+++|+|||||+||
T Consensus 250 vWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~-hg~v~~~G~KMSKS~GN 328 (536)
T 4dlp_A 250 VWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFA-HGFLFNRGEKMSKSVGN 328 (536)
T ss_dssp HHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEE-ECCEEC-----------
T ss_pred EeeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEEe-eeeEeeCCceecccCCC
Confidence 8776533311 00 013789999999999999999999999988888888855 59999999999999999
Q ss_pred ccCHHHHHHhcCchhHHHHHhh-cCCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccC-----CCccCCChh
Q 012397 290 FFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEH-----GKTARINPA 361 (464)
Q Consensus 290 ~i~~~dll~~~~~dalR~~ll~-~~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~~~~~-----~~~~~~d~~ 361 (464)
+|+|.|++++||+|++|||+++ .++++|++|+++.+.+..|. .++++|+++|+.+.+.+...+ ....+.|++
T Consensus 329 vi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~~~~~d~~ 408 (536)
T 4dlp_A 329 VIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKA 408 (536)
T ss_dssp -CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHH
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCHHHHH
Confidence 9999999999999999999999 49999999999999887653 457777777776665433211 122456899
Q ss_pred HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhh-hhHHHHHHHHHHHHHHHHHhhc-cCC
Q 012397 362 AEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ-LSLIESLRKIENEVKEVLRILG-LLP 439 (464)
Q Consensus 362 l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~-~~r~~~~~~~~~~l~~~l~lLg-i~p 439 (464)
++.+++++++.+.++| ++++++.|+.. +++|++.+|+|++.++||...+.+ +.+..++.++.++|+.++.+|+ |+|
T Consensus 409 ll~~l~~~~~~v~~a~-~~~~~~~a~~~-l~~l~~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P 486 (536)
T 4dlp_A 409 ILDQADAALETARKAM-DDQALHLALGA-IFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIP 486 (536)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSH
T ss_pred HHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 9999999999999999 99999999998 999999999999999999754433 3345567899999999999999 999
Q ss_pred CccHHHHHHHhhhh
Q 012397 440 PGAYSEVKTAFLVL 453 (464)
Q Consensus 440 ~~~~e~i~~~l~~~ 453 (464)
+ +||+||++|+..
T Consensus 487 ~-~aeei~~~L~~~ 499 (536)
T 4dlp_A 487 Q-SAEKLLDILAVP 499 (536)
T ss_dssp H-HHHHHHHTTTCC
T ss_pred H-HHHHHHHHcCCC
Confidence 8 999999999875
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-65 Score=532.04 Aligned_cols=403 Identities=17% Similarity=0.198 Sum_probs=308.1
Q ss_pred ceEEEeCCCC--CCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 40 VGMYVCGVTA--YDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 40 ~~v~~~~P~p--~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
..+++|+|+| ||++||||+|+++++|+++|++|++|++|.++.|+|+||.+|+.+|+++|++++++++++.+.|.+++
T Consensus 5 ~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 84 (497)
T 2csx_A 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLW 84 (497)
T ss_dssp CEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3466666554 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCcch--hHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CCCCCCCCCcccccccc
Q 012397 118 ADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLSGQRLENNRA 181 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s~--~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~~~g~l~~~~~~~~~~ 181 (464)
++|||++ |.+.++++ |.+.++++|.+|+++|++|+++..++||+.+ |+.||. .++....
T Consensus 85 ~~lgi~~-d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~----~~~~~~~ 159 (497)
T 2csx_A 85 EFLKIEY-TKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQK----KCEYIKE 159 (497)
T ss_dssp HHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC-------------------------------------CC
T ss_pred HHhCCcC-CCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCC----CCeEEec
Confidence 9999985 77778876 9999999999999999999999999998763 444553 1111111
Q ss_pred CCC-cccCCc--------ccCc---------cccccccc--ccCCCCcc---cCCCCCCCC---chhh-----H----HH
Q 012397 182 GER-VAVDSR--------KRNP---------ADFALWKA--AKAGEPSW---DSPWGPGRP---GWHI-----E----CS 226 (464)
Q Consensus 182 g~~-~~~~~~--------k~~~---------~d~~~w~~--~~~g~~~~---~~~wg~~~P---~w~~-----~----~~ 226 (464)
+.. +.+... +.++ ..+.-|.. ..+-.++| +.+||.++| +|++ + |+
T Consensus 160 ~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s 239 (497)
T 2csx_A 160 PSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYIS 239 (497)
T ss_dssp EEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHH
T ss_pred CceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcc
Confidence 100 000000 0011 00001111 11222344 668999999 4443 3 34
Q ss_pred HHHH---hhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCch
Q 012397 227 AMSA---HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPL 303 (464)
Q Consensus 227 ~~~~---~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~d 303 (464)
++.. ++| |+|+|++|+||++||+.+|++++++++.++|..+ +|||||+++|+|||||+||+|+|.|++++||+|
T Consensus 240 ~~~~~~~~~~--p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~-~~~G~v~~~G~KMSKS~GN~i~~~dli~~~g~D 316 (497)
T 2csx_A 240 ALEDKVEIYW--PADLHLVGKDILRFHTVYWPAFLMSLGYELPKKV-FAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLD 316 (497)
T ss_dssp TTTTTHHHHC--SCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCE-EEECCEESSSSBCCTTTTCCCCHHHHHHHHCHH
T ss_pred cCCCcchhhC--CceEEEeecchhHhHHHHHHHHHHHcCCCCCcEE-EECcEEEeCCceeCCcCCCCCCHHHHHHHCCcH
Confidence 3333 456 7899999999999999999999988876666665 678999999999999999999999999999999
Q ss_pred hHHHHHhh-cCCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcc
Q 012397 304 ALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDD 380 (464)
Q Consensus 304 alR~~ll~-~~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~ 380 (464)
++|||+++ .++++|++|+++.+.+..+. ..+++|+++|+.+.+.+...+....+.|++++.+++++++.+.++| ++
T Consensus 317 alR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~ 395 (497)
T 2csx_A 317 EVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVSGARDEEYAKIAQESIKNYENYM-EK 395 (497)
T ss_dssp HHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTCBCCCCCTTHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH-Hc
Confidence 99999998 58999999999999987664 3466677777766654432222224678999999999999999999 99
Q ss_pred cChHHHHHHHHHHHHHHHHHHhhhhcccCchh-hh-hhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh
Q 012397 381 LNTSHILTGAFQDALKFINSSLNMLKKKQPKQ-QQ-LSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL 453 (464)
Q Consensus 381 ~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~-~~-~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~ 453 (464)
++++.|++. |+++++.+|+|++.++||...+ .+ +....++.++.++|+.++.+|+ |+|+ +||+||+.|+..
T Consensus 396 ~~~~~a~~~-l~~l~~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~-~aeei~~~L~~~ 469 (497)
T 2csx_A 396 VNFYKAIEE-ILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPN-KMKEALQMLGEK 469 (497)
T ss_dssp TCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHTTCS
T ss_pred cCHHHHHHH-HHHHHHHHHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCH-HHHHHHHHcCCC
Confidence 999999999 9999999999999999985432 12 2233557889999999999999 9999 999999999854
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-64 Score=530.80 Aligned_cols=413 Identities=15% Similarity=0.148 Sum_probs=324.6
Q ss_pred cCCCCcceEEEeCCCCC--CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHH
Q 012397 34 PIVRGKVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQ 111 (464)
Q Consensus 34 ~~~~~~~~v~~~~P~p~--G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~ 111 (464)
|..++++.+|+|+|+|| |++||||+|+++++|+++|++|++|++|.+++|+||||.+|+.+|++.|++++++++++.+
T Consensus 12 ~~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 91 (560)
T 3h99_A 12 SMTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQ 91 (560)
T ss_dssp -----CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 44578889999988777 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCCC------
Q 012397 112 EYLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRL------ 171 (464)
Q Consensus 112 ~~~~~l~~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~l------ 171 (464)
.|.+++++|||++ |.+.+++ +|.+.+++++.+|.++|++|++++.+|||+.+ ||.||..
T Consensus 92 ~~~~~~~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ 170 (560)
T 3h99_A 92 EHQTDFAGFNISY-DNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDN 170 (560)
T ss_dssp HHHHHHHHTTCCC-SEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTB
T ss_pred HHHHHHHHcCCCC-CCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccch
Confidence 9999999999996 6666665 78889999999999999999999999999874 7777642
Q ss_pred --------CCccccccc---cCCCcccCCcc---cCccccc---------------------cccc--ccCCCCcccC-C
Q 012397 172 --------SGQRLENNR---AGERVAVDSRK---RNPADFA---------------------LWKA--AKAGEPSWDS-P 213 (464)
Q Consensus 172 --------~~~~~~~~~---~g~~~~~~~~k---~~~~d~~---------------------~w~~--~~~g~~~~~~-~ 213 (464)
.+.++.+.. +|.++...... -.-.++. -|.. ..+..++|+. .
T Consensus 171 ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~ 250 (560)
T 3h99_A 171 CEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPY 250 (560)
T ss_dssp CTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSC
T ss_pred hhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCc
Confidence 112221111 23322110000 0000000 0111 1222356766 7
Q ss_pred CCCCCC--------chhhHHHHHH----------------HhhcCCCee-----EEEecccCccccchHHHHHHhhccCC
Q 012397 214 WGPGRP--------GWHIECSAMS----------------AHYLSSKFD-----IHGGGIDLIFPHHENEIAQSCAACQD 264 (464)
Q Consensus 214 wg~~~P--------~w~~~~~~~~----------------~~~~~~~~~-----i~~~G~D~~~~h~~~~~a~~~a~~~~ 264 (464)
||+++| .|+++...+. ..+| |.+ +|++|+||++||+.+|++++++++.+
T Consensus 251 WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~w--p~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~~ 328 (560)
T 3h99_A 251 FGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYW--KKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFR 328 (560)
T ss_dssp SSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHH--BTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBC
T ss_pred CCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhC--cCCCCceeEEEeccccchhHHHHHHHHHHhCCCC
Confidence 899999 4876543221 1223 344 99999999999999999999998877
Q ss_pred CCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCC-CccCCCHHHHHHHHH--HHHHHHHHHH
Q 012397 265 SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYR-SPLNYSVLQLDSASD--AVFYIYQTLQ 340 (464)
Q Consensus 265 ~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~-~~~~f~~~~~~~~~~--~l~~l~~~~~ 340 (464)
.|..+++ ||||+++|+|||||+||+|+|.|++++||+|++|||+++. +.+ +|++|+++.+.+..+ ...+++|.++
T Consensus 329 ~p~~v~~-hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~ 407 (560)
T 3h99_A 329 KPSNLFV-HGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLAS 407 (560)
T ss_dssp CCSEEEE-ECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHH
T ss_pred CCcEEEE-EeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777755 6999999999999999999999999999999999999987 556 899999999986543 3556777777
Q ss_pred HHHHhcCccccCC-CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchh---hhhh
Q 012397 341 DCEVALSPFQEHG-KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ---QQLS 416 (464)
Q Consensus 341 ~~~~~l~~~~~~~-~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~---~~~~ 416 (464)
|+.+++.+...+. ...+.|++++.+++++++.+.++| ++++++.|+.. +++|++.+|+|++.++||...+ ..+.
T Consensus 408 R~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~a~~~-l~~l~~~~n~Yi~~~kpw~l~k~~~~~~~ 485 (560)
T 3h99_A 408 RNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAW-ESREFGKAVRE-IMALADLANRYVDEQAPWVVAKQEGRDAD 485 (560)
T ss_dssp TTHHHHHHHSTTBCCSSCSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTSTTCHHH
T ss_pred HHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhcCchhhcCCcCcHHH
Confidence 7776665432221 124578999999999999999999 99999999999 9999999999999999985322 2344
Q ss_pred HHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh
Q 012397 417 LIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL 453 (464)
Q Consensus 417 r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~ 453 (464)
+..++.+++++|+.++.+|+ |+|+ +||+||++|+..
T Consensus 486 ~~~~~~~~~~~l~~~~~lL~P~~P~-~aeei~~~L~~~ 522 (560)
T 3h99_A 486 LQAICSMGINLFRVLMTYLKPVLPK-LTERAEAFLNTE 522 (560)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHcCCC
Confidence 55667888999999999999 9998 999999999854
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-64 Score=531.10 Aligned_cols=416 Identities=17% Similarity=0.161 Sum_probs=326.4
Q ss_pred eecccCCC-CcceEEEeCCCCC--CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHH
Q 012397 30 ELFTPIVR-GKVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLS 106 (464)
Q Consensus 30 ~~~~~~~~-~~~~v~~~~P~p~--G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~ 106 (464)
.+|.|..+ ++..+|+|+|+|| |++||||+|+++++|+++|++|++|++|.+++|+||||++|+.+|+++|++|++++
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~ 94 (564)
T 3kfl_A 15 QTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFT 94 (564)
T ss_dssp ---------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHH
T ss_pred hhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHH
Confidence 45656554 3456777776655 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccc------
Q 012397 107 NRYCQEYLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLEN------ 178 (464)
Q Consensus 107 ~~~~~~~~~~l~~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~------ 178 (464)
+++.+.|.+++++|||++ |.+.|++ +|.+.+++++++|.++|++|++++++|||+.|... +++.++.+
T Consensus 95 ~~~~~~~~~~~~~lgi~~-D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~---l~~~~~~~~~~~~g 170 (564)
T 3kfl_A 95 TSVSSEFKQCFQEMNYDM-NYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESF---LTAQNVADGVDRDG 170 (564)
T ss_dssp HHHHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEE---ECGGGEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCCC-CccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCC---CCHHHhccCcCCCC
Confidence 999999999999999996 6777777 68999999999999999999999999999874210 11110000
Q ss_pred ------cccCCCccc----------CCc--------ccCccccc----------cccc--ccCCCCcc----cCCCCCCC
Q 012397 179 ------NRAGERVAV----------DSR--------KRNPADFA----------LWKA--AKAGEPSW----DSPWGPGR 218 (464)
Q Consensus 179 ------~~~g~~~~~----------~~~--------k~~~~d~~----------~w~~--~~~g~~~~----~~~wg~~~ 218 (464)
..+|..++. ..+ +.++ ++. -|.. ..+-.++| +..||+++
T Consensus 171 ~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipi 249 (564)
T 3kfl_A 171 KPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHP-NCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPV 249 (564)
T ss_dssp CEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEE
T ss_pred CEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeec
Confidence 012222211 100 0111 111 1111 12334677 56899999
Q ss_pred Cc--------hhhHHHHHH--Hhh-------------c----CCCeeEEEecccCccccchHHHHHHhhccCCCCccEEE
Q 012397 219 PG--------WHIECSAMS--AHY-------------L----SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWM 271 (464)
Q Consensus 219 P~--------w~~~~~~~~--~~~-------------~----~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~ 271 (464)
|+ |+++...+. ..+ | .+|.++|++|+||++||.++|++++++++.++|.++++
T Consensus 250 P~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~wpa~L~a~g~~~~~~v~~ 329 (564)
T 3kfl_A 250 PGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAELPLPERLVS 329 (564)
T ss_dssp TTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEE
T ss_pred CCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHHHHHHHHhCCCCCCcEEEE
Confidence 94 877642221 011 2 24789999999999999999999999998888888855
Q ss_pred EeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhh-cCCCCccCCCHHHHHHHHH--HHHHHHHHHHHHHHhcCc
Q 012397 272 HNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASD--AVFYIYQTLQDCEVALSP 348 (464)
Q Consensus 272 ~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~-~~~~~~~~f~~~~~~~~~~--~l~~l~~~~~~~~~~l~~ 348 (464)
|||++.+|+|||||+||+|+|.|+++.||+|++|||+++ .++++|++|+++.+.+..| ...+|+|+++|+.+++..
T Consensus 330 -hg~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~ 408 (564)
T 3kfl_A 330 -HGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKIN 408 (564)
T ss_dssp -ECCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTS
T ss_pred -cccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999 5999999999999998765 467888988888887653
Q ss_pred cccC----CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhH-HHHHHH
Q 012397 349 FQEH----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSL-IESLRK 423 (464)
Q Consensus 349 ~~~~----~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r-~~~~~~ 423 (464)
.... ....+.|++++.+++++++.+.++| ++++++.|+.. +++|++.+|+|++.++||...+.+..+ ..++..
T Consensus 409 ~~g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-i~~l~~~~n~Y~~~~kpW~l~~~~~~~~~~~~~~ 486 (564)
T 3kfl_A 409 VNGMWPEPAEYSESDKTLIASLNNLAGTVDHYY-CLPDIQHALIA-IFDVLRSLNAYVTENAPWKLVKMDTARLGTVLYV 486 (564)
T ss_dssp TTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTTCHHHHHHHHHH
T ss_pred cCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHH
Confidence 2111 1124467899999999999999999 99999999999 999999999999999999754433334 456788
Q ss_pred HHHHHHHHHHhhc-cCCCccHHHHHHHhhhhH
Q 012397 424 IENEVKEVLRILG-LLPPGAYSEVKTAFLVLL 454 (464)
Q Consensus 424 ~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~ 454 (464)
+.++++.++.+|+ |+|+ +||+||++|+...
T Consensus 487 l~~~l~~l~~lL~P~~P~-~ae~i~~~Lg~~~ 517 (564)
T 3kfl_A 487 TMEGLRICTMFLQPVMPQ-KAKEIMDALGVPE 517 (564)
T ss_dssp HHHHHHHHHHHHTTTSHH-HHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHhHhhH-HHHHHHHHcCCCc
Confidence 9999999999999 9998 9999999998754
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-63 Score=534.81 Aligned_cols=410 Identities=15% Similarity=0.131 Sum_probs=318.9
Q ss_pred cceEEEeCCCCCCcCCcccchh-HHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 39 KVGMYVCGVTAYDLSHLGHARA-AVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~-~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
+..|.++.|+|||.+||||+++ ++++|+++|++|++|++|.|++|+|+||++|+.+|+++|++|++++++|.+.|.+++
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~ 82 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITF 82 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4456666788889999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCCC------------
Q 012397 118 ADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRL------------ 171 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~l------------ 171 (464)
++|||++ |.+.||+ +|.+.++++|.+|+++|++|++.++++||+.| ||.||.-
T Consensus 83 ~~lgis~-D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~ 161 (722)
T 1rqg_A 83 QRAKISF-DFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGR 161 (722)
T ss_dssp HHHTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCC
T ss_pred HHhCCCC-CCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhccc
Confidence 9999985 7788877 58899999999999999999999999999875 6766641
Q ss_pred --CCcccccc---ccCCCcccCC----------cccCccccc---ccccc---------cCCC----CcccCCCCCCCCc
Q 012397 172 --SGQRLENN---RAGERVAVDS----------RKRNPADFA---LWKAA---------KAGE----PSWDSPWGPGRPG 220 (464)
Q Consensus 172 --~~~~~~~~---~~g~~~~~~~----------~k~~~~d~~---~w~~~---------~~g~----~~~~~~wg~~~P~ 220 (464)
++.++... ++|..++... ++....++. .|... +.|. ++|+.+||+++|.
T Consensus 162 ~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~ 241 (722)
T 1rqg_A 162 PLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPL 241 (722)
T ss_dssp CCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSC
T ss_pred ccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccCccccCc
Confidence 11111111 1233322110 000000000 13221 2343 4568899999994
Q ss_pred ------------hhhHH---HHHH-------------HhhcC--C--CeeEEEecccCccccchHHHHHHhhcc------
Q 012397 221 ------------WHIEC---SAMS-------------AHYLS--S--KFDIHGGGIDLIFPHHENEIAQSCAAC------ 262 (464)
Q Consensus 221 ------------w~~~~---~~~~-------------~~~~~--~--~~~i~~~G~D~~~~h~~~~~a~~~a~~------ 262 (464)
|++++ .... ..||. . ..++|++|+|+++||..+||+++++++
T Consensus 242 ~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d 321 (722)
T 1rqg_A 242 DEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEE 321 (722)
T ss_dssp CCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSS
T ss_pred cccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCcccc
Confidence 44332 1111 23564 2 245899999999999999999998875
Q ss_pred ----CCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH--HHHH
Q 012397 263 ----QDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYI 335 (464)
Q Consensus 263 ----~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~--l~~l 335 (464)
.+.|.++ ++|||++++|+|||||+||+|+|.|+++.||+|++|||+++. ++++|++|+++.+.+..|. ++++
T Consensus 322 ~~rg~~~Pk~v-~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l 400 (722)
T 1rqg_A 322 VEAEWNLPYDI-PANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNL 400 (722)
T ss_dssp CCBCBCCCSBC-CEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTH
T ss_pred cccCCCCCCEE-EEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 2445444 778999999999999999999999999999999999999997 9999999999999987663 3344
Q ss_pred HHHHHHHHHhcCccccC-----CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCc
Q 012397 336 YQTLQDCEVALSPFQEH-----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQP 410 (464)
Q Consensus 336 ~~~~~~~~~~l~~~~~~-----~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~ 410 (464)
.|.+.|+.+++.+..++ ....+.|++++.+++++.+.+.++| ++++++.|+.. +++|++.+|+|++..+||..
T Consensus 401 ~N~~~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~f~~A~~~-i~~~~~~~n~Yi~~~kpw~~ 478 (722)
T 1rqg_A 401 GNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYRFKDALKR-VMSLASFGNRYFDHKQPWKT 478 (722)
T ss_dssp HHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCchhh
Confidence 44444444443322111 1123457899999999999999999 99999999999 99999999999999999975
Q ss_pred hhhhhhHH-HHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh
Q 012397 411 KQQQLSLI-ESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL 453 (464)
Q Consensus 411 ~~~~~~r~-~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~ 453 (464)
.+.+..++ .++..++++++.++.+|. |+|+ +||+||++|+..
T Consensus 479 ~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~-~aeei~~~L~~~ 522 (722)
T 1rqg_A 479 AKEDKVRTGTTVNISLQIVKALGILLEPFLPD-ASEKIWHLLNLD 522 (722)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhccccH-HHHHHHHHcCCC
Confidence 43333333 456788999999999999 9999 999999999853
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-63 Score=521.75 Aligned_cols=401 Identities=19% Similarity=0.201 Sum_probs=310.3
Q ss_pred eEEEeCCCC--CCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 41 GMYVCGVTA--YDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 41 ~v~~~~P~p--~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
.+++|+|+| ||++||||+|+++++|+++|++|++|++|.++.|+|+||.+|+.+|+++|++++++++++.+.|.++++
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 467776666 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcch--hHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------CCCCCCCCCccccccccCC
Q 012397 119 DLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYGRLSGQRLENNRAGE 183 (464)
Q Consensus 119 ~lgi~~~~~~~r~s~--~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~~~~g~l~~~~~~~~~~g~ 183 (464)
+|||++ |.+.++++ |.+.+++++.+|.++|++|++++.++||+.+ |+.||. .++....+.
T Consensus 84 ~lgi~~-d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~----~v~~~~~~~ 158 (500)
T 2d5b_A 84 LLGIAY-DDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGR----PVERRKEGN 158 (500)
T ss_dssp HTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCS----BCEEEEEEE
T ss_pred HhCCcC-CCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCC----eeeEEecCc
Confidence 999985 77778875 8999999999999999999999999998764 344443 111111110
Q ss_pred C-cccCC--------cccCccccccccc------------ccCCCCcc---cCCCCCCCCc--------hhhHHHHH---
Q 012397 184 R-VAVDS--------RKRNPADFALWKA------------AKAGEPSW---DSPWGPGRPG--------WHIECSAM--- 228 (464)
Q Consensus 184 ~-~~~~~--------~k~~~~d~~~w~~------------~~~g~~~~---~~~wg~~~P~--------w~~~~~~~--- 228 (464)
. +.+.. .+.++ ++..+.. .++-.++| +.+||.++|. |+.+....
T Consensus 159 wf~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~ 237 (500)
T 2d5b_A 159 YFFRMEKYRPWLQEYIQENP-DLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSA 237 (500)
T ss_dssp EEECGGGGHHHHHHHHHTCT-TSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHT
T ss_pred eEEEcHHHHHHHHHHHHhCC-CeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHH
Confidence 0 00000 01111 2222211 01222455 5589999992 54432111
Q ss_pred --------HHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHh
Q 012397 229 --------SAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER 299 (464)
Q Consensus 229 --------~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~ 299 (464)
...+| +.|+|++|+||++||+++|++++++++.++|..+ +|||||++ +|+|||||+||+|+|.|++++
T Consensus 238 ~g~~~~~~~~~~~--p~di~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v-~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~ 314 (500)
T 2d5b_A 238 LDYPEGEAYRTFW--PHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHL-NVGGFLLGPDGRKMSKTLGNVVDPFALLEK 314 (500)
T ss_dssp TTTTTCHHHHHHG--GGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEE-EEECCEECTTSSCCCTTTTCCCCHHHHHHH
T ss_pred cCCCCCchHHHcC--CCeEEEEeechhhhHHHHHHHHHHHcCCCCCcEE-EECceEEeCCCCcccccCCCCCCHHHHHHh
Confidence 22344 6799999999999999999999988876555555 77899999 999999999999999999999
Q ss_pred cCchhHHHHHhh-cCCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHH
Q 012397 300 YHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376 (464)
Q Consensus 300 ~~~dalR~~ll~-~~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~ 376 (464)
||+|++|||+++ .++++|++|+++.+.+..+. ...++|.+.|+.+.+.+...+....+.+++++.+++++++.+.++
T Consensus 315 ~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~a 394 (500)
T 2d5b_A 315 YGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIPEPVAGEELAEGTGLAGRLRPL 394 (500)
T ss_dssp HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCGGGGGGGGHHHHHHHH
T ss_pred cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999998 59999999999999887653 223344444444433222111111223589999999999999999
Q ss_pred HhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHH-HHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh
Q 012397 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI-ESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL 453 (464)
Q Consensus 377 ~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~-~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~ 453 (464)
| ++++++.|+.. |+++++.+|+|++.++||...+.+..|+ .++.++.++++.++.+|+ |+|+ +||+||+.|+..
T Consensus 395 ~-~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~-~aeei~~~l~~~ 470 (500)
T 2d5b_A 395 V-RELKFHVALEE-AMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPD-KMAELRRALGLK 470 (500)
T ss_dssp H-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHTTCC
T ss_pred H-HccCHHHHHHH-HHHHHHHHHHHHHhcCchhhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccH-HHHHHHHHcCCC
Confidence 9 99999999999 9999999999999999996433322333 467888999999999999 9999 999999999864
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-63 Score=520.09 Aligned_cols=405 Identities=17% Similarity=0.172 Sum_probs=311.7
Q ss_pred CCcceEEEeC--CCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 012397 37 RGKVGMYVCG--VTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYL 114 (464)
Q Consensus 37 ~~~~~v~~~~--P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 114 (464)
.|+..+++++ |+|||++||||+|+++++|+++|++|++|++|.++.|+|+||.+|+.+|+++|++++++++++.+.|.
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 88 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQ 88 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3444455554 66679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcch--hHHHHHHHHHHHHHCCceEeecCcEEEcCCC-----------------CC-CCCCCCCc
Q 012397 115 VDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK-----------------SP-NYGRLSGQ 174 (464)
Q Consensus 115 ~~l~~lgi~~~~~~~r~s~--~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-----------------~~-~~g~l~~~ 174 (464)
+++++|||++ |.+.|+++ |.+.++++|.+|+++|++|++++.+|||+.+ |+ .||.
T Consensus 89 ~~~~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~---- 163 (524)
T 2x1l_A 89 RLQEKLNISF-DRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGA---- 163 (524)
T ss_dssp HHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCC----
T ss_pred HHHHHcCCcC-CCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCC----
Confidence 9999999985 77888886 9999999999999999999999999999875 11 2331
Q ss_pred cccccccCCC-cccCCc--------ccCccccc----------ccc--cccCCCCccc-CCCCCCCCc--------hhhH
Q 012397 175 RLENNRAGER-VAVDSR--------KRNPADFA----------LWK--AAKAGEPSWD-SPWGPGRPG--------WHIE 224 (464)
Q Consensus 175 ~~~~~~~g~~-~~~~~~--------k~~~~d~~----------~w~--~~~~g~~~~~-~~wg~~~P~--------w~~~ 224 (464)
.++.....+. +.+..+ +.++ ++. -|. ..++..++|+ .+||.++|. |+.+
T Consensus 164 ~v~~~~~~qwF~~l~~~~~~l~~~~~~~~-~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds 242 (524)
T 2x1l_A 164 PVTWTEEQTYFFRLSAYTDRLLALYEEHP-EFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDA 242 (524)
T ss_dssp BEEEEEEEEEEECGGGSHHHHHHHHHHCG-GGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHH
T ss_pred cceEEecCCeEeeHHHHHHHHHHHHHhCC-CeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCC
Confidence 1111000000 000000 0010 100 011 1223344555 369999882 6544
Q ss_pred HHH-------------HHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCcc
Q 012397 225 CSA-------------MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFF 291 (464)
Q Consensus 225 ~~~-------------~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i 291 (464)
... +...+| |.|+|++|+|+++||+++|++++++.+.++|.++++| |||+++|+|||||+||+|
T Consensus 243 ~~~~~~~~g~p~~~~~~~~~~~--p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~h-G~v~~~G~KMSKS~GN~v 319 (524)
T 2x1l_A 243 LTNYLTGVGFPDTESESFRRYW--PADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAH-GWLLNRGEKMSKSIGNVV 319 (524)
T ss_dssp HTHHHHTTTTTCTTSHHHHHHC--SCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEE-CCEEECSCSEETTTEESS
T ss_pred chHHHHHcCCCCCchHHHHhhC--CCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEEC-cEEEeCCcccCCcCCCCC
Confidence 321 222344 6899999999999999999999998887777788664 999999999999999999
Q ss_pred CHHHHHHhcCchhHHHHHhh-cCCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCcccc-----CCCccCCChhHH
Q 012397 292 TIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQE-----HGKTARINPAAE 363 (464)
Q Consensus 292 ~~~dll~~~~~dalR~~ll~-~~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~~~~-----~~~~~~~d~~l~ 363 (464)
+|.|++++||+|++|||+++ .++++|++|+++.+.+..+. ..+|+|.+.|+.+.+.+... .....+.|++++
T Consensus 320 ~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~ 399 (524)
T 2x1l_A 320 DPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALL 399 (524)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHH
T ss_pred CHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhHHHHH
Confidence 99999999999999999998 58999999999999988764 22233333443333222111 111244678999
Q ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhh----h-hhHHHHHHHHHHHHHHHHHhhc-c
Q 012397 364 DCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ----Q-LSLIESLRKIENEVKEVLRILG-L 437 (464)
Q Consensus 364 ~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~----~-~~r~~~~~~~~~~l~~~l~lLg-i 437 (464)
.+++++++.+.++| ++++++.|+.. |++|++.+|+|++.++||...+. + +....++.++.++++.++.+|. |
T Consensus 400 ~~l~~~~~~v~~a~-~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~ 477 (524)
T 2x1l_A 400 AAADALLERVREHF-DVPAMHLALEA-IWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPV 477 (524)
T ss_dssp HHHHTHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999 99999999999 99999999999999999854321 2 2233456788999999999999 9
Q ss_pred CCCccHHHHHHHhhhh
Q 012397 438 LPPGAYSEVKTAFLVL 453 (464)
Q Consensus 438 ~p~~~~e~i~~~l~~~ 453 (464)
+|+ +||+||+.|+..
T Consensus 478 ~P~-~aeei~~~L~~~ 492 (524)
T 2x1l_A 478 MPE-STAKLLDLLGQP 492 (524)
T ss_dssp CHH-HHHHHHHHTTCC
T ss_pred hhH-HHHHHHHHcCCC
Confidence 999 999999999864
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-54 Score=470.95 Aligned_cols=417 Identities=17% Similarity=0.162 Sum_probs=314.3
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH----cCCCh-----------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND----LGENP----------- 102 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~----~g~~~----------- 102 (464)
++..|+.++|+|||.|||||+++.+++|+++|+.|++|++|.++.|+|+||.+++.++++ .|+++
T Consensus 34 ~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~ 113 (862)
T 1gax_A 34 PPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLER 113 (862)
T ss_dssp CEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHH
T ss_pred CcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHH
Confidence 455666667888899999999999999999999999999999999999999999887763 46654
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCCC---CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC-------------
Q 012397 103 -LSLSNRYCQEYLVDMADLQCLPPT---YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------- 165 (464)
Q Consensus 103 -~~~~~~~~~~~~~~l~~lgi~~~~---~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~------------- 165 (464)
++++++|.+.+.+.+++||++.+- .++...+|.+.++++|.+|+++|+||++...++||+.|.
T Consensus 114 ~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~ 193 (862)
T 1gax_A 114 VWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEPT 193 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEEECCE
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcCccccccccccccc
Confidence 477999999999999999999631 122233788999999999999999999999999998751
Q ss_pred ----------------------------------------------------CCCCCCCCcccc---ccccCC-------
Q 012397 166 ----------------------------------------------------PNYGRLSGQRLE---NNRAGE------- 183 (464)
Q Consensus 166 ----------------------------------------------------~~~g~l~~~~~~---~~~~g~------- 183 (464)
|.||+-.+.... +...|+
T Consensus 194 ~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~P 273 (862)
T 1gax_A 194 PGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTP 273 (862)
T ss_dssp EEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEECTTCCTTSSSSEEECCG
T ss_pred cceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCccHHHHHcCCEEECCCCCCeeeEEeccccccCCCCcceEecC
Confidence 111110000000 000000
Q ss_pred --------------------------Ccc------cC-------------------------Cc---------ccCc---
Q 012397 184 --------------------------RVA------VD-------------------------SR---------KRNP--- 194 (464)
Q Consensus 184 --------------------------~~~------~~-------------------------~~---------k~~~--- 194 (464)
-.+ +. .+ ...|
T Consensus 274 ahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~ 353 (862)
T 1gax_A 274 AHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEY 353 (862)
T ss_dssp GGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCE
T ss_pred CCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEE
Confidence 000 00 00 0000
Q ss_pred ----c-------------------c-----------ccccc-cccCCCCcccCCCCCCCCchhhH-HH-----H------
Q 012397 195 ----A-------------------D-----------FALWK-AAKAGEPSWDSPWGPGRPGWHIE-CS-----A------ 227 (464)
Q Consensus 195 ----~-------------------d-----------~~~w~-~~~~g~~~~~~~wg~~~P~w~~~-~~-----~------ 227 (464)
. . +.-|. ...+..++|+..||.++|.|+.+ |. .
T Consensus 354 ~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~i~v~~~~~l~~ 433 (862)
T 1gax_A 354 AIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLE 433 (862)
T ss_dssp EECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCEECCCGGGTTC
T ss_pred EecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCCEEEEeccccccc
Confidence 0 0 00000 11234567788999999987542 10 0
Q ss_pred ------------H------------H--Hh--hcC-----------CCeeEEEecccCccccchHHHHHHhhccCC-CCc
Q 012397 228 ------------M------------S--AH--YLS-----------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNV 267 (464)
Q Consensus 228 ------------~------------~--~~--~~~-----------~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~ 267 (464)
+ + +. .++ +|.|++++|+|++++|+....++..++.+. ||.
T Consensus 434 ~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk 513 (862)
T 1gax_A 434 DPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFK 513 (862)
T ss_dssp CCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBS
T ss_pred cchhhhhcCchheecCCcccceeeccCCcchhhccCCCchHHHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCccc
Confidence 0 0 00 011 478999999999999987777776665554 668
Q ss_pred cEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 012397 268 SYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVA 345 (464)
Q Consensus 268 ~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~ 345 (464)
++++ ||+++. +|+|||||+||+|+|.|++++||+|++|||+++. ++++|++|+++.+.+..+.+.+++|+++++...
T Consensus 514 ~v~~-hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~ 592 (862)
T 1gax_A 514 TVLL-HGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLS 592 (862)
T ss_dssp EEEE-ECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEE-eeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8876 589985 9999999999999999999999999999999986 899999999999999999999999998777665
Q ss_pred cCcccc-CCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH--HHHHHhhhhcccCchhhhhhHHHHHH
Q 012397 346 LSPFQE-HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKKQPKQQQLSLIESLR 422 (464)
Q Consensus 346 l~~~~~-~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~--~~n~~~~~~~~~~~~~~~~~r~~~~~ 422 (464)
+....+ ....+..|+|++++++++++++.++| ++|+++.|+.. |++|+. .+|+|++..++|... . +.....
T Consensus 593 ~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~-l~~f~~~~~~n~Yie~~k~~l~~--~--~~~~~~ 666 (862)
T 1gax_A 593 REGFQAKEDTPTLADRFMRSRLSRGVEEITALY-EALDLAQAARE-VYELVWSEFCDWYLEAAKPALKA--G--NAHTLR 666 (862)
T ss_dssp SSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHH-TTTCHHHHHHH-HHHHHHHHTTTTHHHHHHHHHHT--T--BHHHHH
T ss_pred ccCCCCccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHhhHHHHHHcchhhhc--c--HHHHHH
Confidence 544311 01124568999999999999999999 99999999999 999994 579999998886311 1 445668
Q ss_pred HHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 423 KIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 423 ~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
++.++|+.++.+|+ |+|+ +||+||+.|+...+++++.||
T Consensus 667 ~l~~~l~~~~~lL~P~~P~-~aEeiw~~L~~~~sv~~~~wP 706 (862)
T 1gax_A 667 TLEEVLAVLLKLLHPMMPF-LTSELYQALTGKEELALEAWP 706 (862)
T ss_dssp HHHHHHHHHHHHHTTTSHH-HHHHHHHHHHCCSCGGGSCCC
T ss_pred HHHHHHHHHHHHHhhhhhH-HHHHHHHhcCCCCeEEecCCC
Confidence 89999999999999 9998 999999999755679999988
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-52 Score=461.36 Aligned_cols=421 Identities=16% Similarity=0.152 Sum_probs=315.5
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCCh------------HHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENP------------LSL 105 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~------------~~~ 105 (464)
++..+..++|+|||.|||||+++++++|+++|+.|++|++|.|+.|+|+||.+|+.+|.+.|+++ +++
T Consensus 48 ~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~ 127 (917)
T 1ffy_A 48 ETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEF 127 (917)
T ss_dssp CBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHH
T ss_pred CceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHH
Confidence 45555666788889999999999999999999999999999999999999999999999989875 689
Q ss_pred HHHHHHHHHHHHHhcCCCCC-CCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCC--------------
Q 012397 106 SNRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNY-------------- 168 (464)
Q Consensus 106 ~~~~~~~~~~~l~~lgi~~~-~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~-------------- 168 (464)
++++.+.+.+++++||++.+ +.+.+|. +|.+.++.+|.+|+++|++|++...++||+.|...+
T Consensus 128 ~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~ 207 (917)
T 1ffy_A 128 ALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSAS 207 (917)
T ss_dssp HHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhcccccCce
Confidence 99999999999999999842 3344443 788899999999999999999999999998751000
Q ss_pred ----------------C-C------------------CCCc---------c------------------cccc-------
Q 012397 169 ----------------G-R------------------LSGQ---------R------------------LENN------- 179 (464)
Q Consensus 169 ----------------g-~------------------l~~~---------~------------------~~~~------- 179 (464)
+ . +.+. + ++..
T Consensus 208 ~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~ 287 (917)
T 1ffy_A 208 IYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKE 287 (917)
T ss_dssp EECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCCCC
T ss_pred EEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceeeeeee
Confidence 0 0 0000 0 0000
Q ss_pred ccCCC----------------------cccCC--------cccCcccccc------------------------------
Q 012397 180 RAGER----------------------VAVDS--------RKRNPADFAL------------------------------ 199 (464)
Q Consensus 180 ~~g~~----------------------~~~~~--------~k~~~~d~~~------------------------------ 199 (464)
..|.. |..+. .-+.+.||.+
T Consensus 288 ~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~~v 367 (917)
T 1ffy_A 288 YTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFY 367 (917)
T ss_dssp CCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSSCS
T ss_pred eecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccCCcCH
Confidence 00000 00000 0000011110
Q ss_pred ------------------------------cccc----------------------------------------------
Q 012397 200 ------------------------------WKAA---------------------------------------------- 203 (464)
Q Consensus 200 ------------------------------w~~~---------------------------------------------- 203 (464)
|+..
T Consensus 368 ~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~~P~~~~~r~~~~l~~ 447 (917)
T 1ffy_A 368 DKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRD 447 (917)
T ss_dssp SHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcccCHHHHHHHHHHHhc
Confidence 1000
Q ss_pred -cCCCCcccCCCCCCCCchhhH-H-----------------------------HHHH-----------------------
Q 012397 204 -KAGEPSWDSPWGPGRPGWHIE-C-----------------------------SAMS----------------------- 229 (464)
Q Consensus 204 -~~g~~~~~~~wg~~~P~w~~~-~-----------------------------~~~~----------------------- 229 (464)
.+..++|+..||.++|.|+.+ . ..+.
T Consensus 448 ~~DW~ISRqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~ 527 (917)
T 1ffy_A 448 RGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDV 527 (917)
T ss_dssp CCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECH
T ss_pred CccceeeccCCcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCcccccccCCCcCe
Confidence 122346677899999977531 0 0000
Q ss_pred ------Hh--------hcCCCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeee-CCcccccccCCccCH
Q 012397 230 ------AH--------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTI 293 (464)
Q Consensus 230 ------~~--------~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~ 293 (464)
.. .+.+|+|+++.|+||+++|+....++..++.+ .||.++++ |||+++ +|+|||||+||+|+|
T Consensus 528 WfdSg~~~~~~l~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~-hG~V~d~~G~KMSKSlGNvV~P 606 (917)
T 1ffy_A 528 WFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLS-HGFVMDGEGKKMSKSLGNVIVP 606 (917)
T ss_dssp HHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEE-ECCEECTTSCCCCSSSSCCCCH
T ss_pred ecCCCCCHHHHcCCchhcCCCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeE-eeeEEcCCCcCcccccCCcCCh
Confidence 00 01247899999999887665444444444444 46678866 599997 999999999999999
Q ss_pred HHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccc--C----CCccCCChhHHHHHH
Q 012397 294 RQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE--H----GKTARINPAAEDCIN 367 (464)
Q Consensus 294 ~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~--~----~~~~~~d~~l~~~l~ 367 (464)
.|++++||+|++|||+++.++++|++|+++.+.+..+.+.+|+|+++++.+.+..+.. . ....+.|++++.+++
T Consensus 607 ~dvi~~yGaDalR~~lls~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~ 686 (917)
T 1ffy_A 607 DQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLR 686 (917)
T ss_dssp HHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHHHH
Confidence 9999999999999999998999999999999999989999999999888776654321 0 112456799999999
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHH--HHHHHhhhhccc--CchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCcc
Q 012397 368 KLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKK--QPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGA 442 (464)
Q Consensus 368 ~~~~~v~~~~~~~~~~~~al~~yl~~l~~--~~n~~~~~~~~~--~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~ 442 (464)
++++++.++| ++|+++.|++. |++|+. ..|.|++..++| ...+...+|..+..++.++++.++.+|+ |+|+ +
T Consensus 687 ~~~~~v~~a~-e~~~f~~a~~~-l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~-~ 763 (917)
T 1ffy_A 687 EFTASTINNY-ENFDYLNIYQE-VQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVH-T 763 (917)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHH-H
T ss_pred HHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccH-H
Confidence 9999999999 99999999999 999998 457888887774 3222344566777889999999999999 9998 9
Q ss_pred HHHHHHHhhh--hHhHhcCCCC
Q 012397 443 YSEVKTAFLV--LLHVFFDDSP 462 (464)
Q Consensus 443 ~e~i~~~l~~--~~~~~~~~~~ 462 (464)
||+||+.|+. ..++++..||
T Consensus 764 aEeiw~~l~~~~~~sv~~~~wP 785 (917)
T 1ffy_A 764 AEEVWSHTPHVKEESVHLADMP 785 (917)
T ss_dssp HHHHHTTSTTCSSSSGGGSCCC
T ss_pred HHHHHHHcccCCCCCeEecCCC
Confidence 9999999974 4579999988
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-52 Score=459.24 Aligned_cols=419 Identities=15% Similarity=0.122 Sum_probs=309.3
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc-CCC---------------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL-GEN--------------- 101 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~-g~~--------------- 101 (464)
++..+..++|+|||.|||||+++++++|+++|+.|++|++|.++.|+|+||.+|+.+|.+. |.+
T Consensus 38 ~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~ 117 (821)
T 1ile_A 38 PRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQ 117 (821)
T ss_dssp CBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHH
T ss_pred CcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHH
Confidence 4556667778888999999999999999999999999999999999999999999999885 876
Q ss_pred -hHHHHHHHHHHHHHHHHhcCCCCC-CCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCC-------C-
Q 012397 102 -PLSLSNRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNY-------G- 169 (464)
Q Consensus 102 -~~~~~~~~~~~~~~~l~~lgi~~~-~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~-------g- 169 (464)
++++++++.+.+.+.+++||++.+ +.+.+|. +|.+.++++|.+|+++|++|++...++||+.|...+ |
T Consensus 118 ~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~ 197 (821)
T 1ile_A 118 ACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGY 197 (821)
T ss_dssp HHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHhhcCc
Confidence 457888999999999999995431 3444443 788999999999999999999999999998742100 0
Q ss_pred -C-----------CCCc-----------------------------------------cc--------c-----------
Q 012397 170 -R-----------LSGQ-----------------------------------------RL--------E----------- 177 (464)
Q Consensus 170 -~-----------l~~~-----------------------------------------~~--------~----------- 177 (464)
. +.+. +. +
T Consensus 198 ~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~ 277 (821)
T 1ile_A 198 KEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLK 277 (821)
T ss_dssp EEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTSCEEE
T ss_pred ccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHhhCcEEEE
Confidence 0 0000 00 0
Q ss_pred -----ccccCC--------------------CcccC--------CcccCccccc--------------------------
Q 012397 178 -----NNRAGE--------------------RVAVD--------SRKRNPADFA-------------------------- 198 (464)
Q Consensus 178 -----~~~~g~--------------------~~~~~--------~~k~~~~d~~-------------------------- 198 (464)
++ .|. .|..+ ...+.+.|+.
T Consensus 278 ~~~G~~l-~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~G 356 (821)
T 1ile_A 278 TFPGKAL-EGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKG 356 (821)
T ss_dssp EECHHHH-TTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSGGGTT
T ss_pred EechHHh-cCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCcccCcCC
Confidence 00 000 00000 0000000000
Q ss_pred ------------------------------------------------------------------ccc-----------
Q 012397 199 ------------------------------------------------------------------LWK----------- 201 (464)
Q Consensus 199 ------------------------------------------------------------------~w~----------- 201 (464)
-|.
T Consensus 357 ~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 436 (821)
T 1ile_A 357 LYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGE 436 (821)
T ss_dssp CBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGTTTTTHH
T ss_pred CCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCeEEECchhhHhHHHH
Confidence 010
Q ss_pred ---cccCCCCcccCCCCCCCCchhhH---------------------------------------H--------------
Q 012397 202 ---AAKAGEPSWDSPWGPGRPGWHIE---------------------------------------C-------------- 225 (464)
Q Consensus 202 ---~~~~g~~~~~~~wg~~~P~w~~~---------------------------------------~-------------- 225 (464)
...+..++|+..||.++|.|+.+ |
T Consensus 437 ~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld 516 (821)
T 1ile_A 437 WLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVID 516 (821)
T ss_dssp HHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCC
T ss_pred HHhCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccCCCCCCchhhcccccc
Confidence 01122356777899999966320 0
Q ss_pred ----HHHH-HhhcC------------CCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeee-CCcccccc
Q 012397 226 ----SAMS-AHYLS------------SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKS 286 (464)
Q Consensus 226 ----~~~~-~~~~~------------~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~-~G~KmSks 286 (464)
+... ...++ +|+|++++|+||+++|+....++..++.+ .||.++++| |+++. +|+|||||
T Consensus 517 ~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~h-g~vl~~~G~KMSKS 595 (821)
T 1ile_A 517 VWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICH-GLILDEKGQKMSKS 595 (821)
T ss_dssp HHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSSCCCTT
T ss_pred eecccccchHhhcCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEE-eeEECCCCCCCCcc
Confidence 0000 00011 47899999999998887666666666655 477888775 88886 99999999
Q ss_pred cCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHH-HHHHHHHHHHHHHHHH--hcCcccc-----CCCccC
Q 012397 287 LGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSA-SDAVFYIYQTLQDCEV--ALSPFQE-----HGKTAR 357 (464)
Q Consensus 287 ~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~-~~~l~~l~~~~~~~~~--~l~~~~~-----~~~~~~ 357 (464)
+||+|+|.|++++||+|++|||+++. ++++|++|+++.+.+. .+.+.+|+|+++++.. .+....+ .....+
T Consensus 596 ~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (821)
T 1ile_A 596 KGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPE 675 (821)
T ss_dssp TTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCH
T ss_pred CCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccccccCCH
Confidence 99999999999999999999999997 7999999999999984 6678888888877542 1222111 011234
Q ss_pred CChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--HHHHHHhhhhc--ccCchhhhhhHHHHHHHHHHHHHHHHH
Q 012397 358 INPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLK--KKQPKQQQLSLIESLRKIENEVKEVLR 433 (464)
Q Consensus 358 ~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~~~~~--~~~~~~~~~~r~~~~~~~~~~l~~~l~ 433 (464)
.|++++.+++++++++.++| ++++++.|++. |++|+ ...|.|++..+ +|...+ .++|+.++.++.++|+.++.
T Consensus 676 ~d~~ll~~l~~~~~~v~~a~-e~~~f~~A~~~-l~~f~~~~~~n~Yl~~~k~~~~~~~~-~~~r~~~~~~l~~~l~~~~~ 752 (821)
T 1ile_A 676 MDRWLLARMQDLIQRVTEAL-EAYDPTTSARA-LRDFVVEDLSQWYVRRNRRRFWKNED-ALDREAAYATLYEALVLVAT 752 (821)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHSSTTTHHHHHHHHHTCTT-TSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHHhhhhcccCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999 89999999999 99999 56799988764 476433 23455667888999999999
Q ss_pred hhc-cCCCccHHHHHHHhhhh-----H-hHhcCCCC
Q 012397 434 ILG-LLPPGAYSEVKTAFLVL-----L-HVFFDDSP 462 (464)
Q Consensus 434 lLg-i~p~~~~e~i~~~l~~~-----~-~~~~~~~~ 462 (464)
+|+ |+|+ +||+||+.|+.- . +++++.||
T Consensus 753 lLaP~~P~-~aeelw~~L~~~~~~~~~~sv~~~~~P 787 (821)
T 1ile_A 753 LAAPFTPF-LAEVLWQNLVRSVRLEAKESVHLADWP 787 (821)
T ss_dssp HHTTTSTT-HHHHHHHHHTTTTSTTSCSSGGGSCCC
T ss_pred HcCCccch-HHHHHHHhccccccCCCCCceEeecCC
Confidence 999 9999 999999999753 4 79999888
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-49 Score=430.69 Aligned_cols=419 Identities=15% Similarity=0.121 Sum_probs=298.4
Q ss_pred eeecccCC-CCcceEEE--eCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHH
Q 012397 29 KELFTPIV-RGKVGMYV--CGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSL 105 (464)
Q Consensus 29 ~~~~~~~~-~~~~~v~~--~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~ 105 (464)
...|.+.. +++..+|+ ++|+|||+|||||+|+++++|+++|++|++|++|.++.|+|+||.+|+.+|.+.|++++++
T Consensus 41 ~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~ 120 (880)
T 4arc_A 41 KRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPW 120 (880)
T ss_dssp TTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHH
T ss_pred cCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHH
Confidence 34565543 24444444 4688889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCC-CCCCCc--chhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------CCCCC
Q 012397 106 SNRYCQEYLVDMADLQCLPP-TYQPRV--SDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYG 169 (464)
Q Consensus 106 ~~~~~~~~~~~l~~lgi~~~-~~~~r~--s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~~~~g 169 (464)
++++.+.|.+++++||++.+ +.+.+| .+|.+.++++|.+|+++|++|++...++||+.| |+.||
T Consensus 121 ~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g 200 (880)
T 4arc_A 121 TYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCD 200 (880)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC------------------------
T ss_pred HHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCC
Confidence 99999999999999999963 133333 378899999999999999999999999999874 55665
Q ss_pred C-------------CCC---c---cccc---------------------------ccc----------------CC----
Q 012397 170 R-------------LSG---Q---RLEN---------------------------NRA----------------GE---- 183 (464)
Q Consensus 170 ~-------------l~~---~---~~~~---------------------------~~~----------------g~---- 183 (464)
. ++. . .++. +.. |.
T Consensus 201 ~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~va 280 (880)
T 4arc_A 201 TKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLA 280 (880)
T ss_dssp ------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEE
T ss_pred CccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccccceEEEEEecCCCceEEEEeCCchhhcCCeEEE
Confidence 3 000 0 0000 000 00
Q ss_pred --------------------------------------------------------C--------cccCC--------cc
Q 012397 184 --------------------------------------------------------R--------VAVDS--------RK 191 (464)
Q Consensus 184 --------------------------------------------------------~--------~~~~~--------~k 191 (464)
. |..+. .-
T Consensus 281 v~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~yV~~~~GTGaV~~~Pa 360 (880)
T 4arc_A 281 VAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPG 360 (880)
T ss_dssp ECTTCHHHHHHGGGCHHHHHHHTC----------------CEEEEEEEEECTTTCCEEEEEEETTSCSSSTTSEEEECTT
T ss_pred ECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceeeccccCcEEecCCCCCEeEEEEeCccccCCCCceEEEccC
Confidence 0 00000 00
Q ss_pred cCccccccccc-----------------------------------------------------------------ccCC
Q 012397 192 RNPADFALWKA-----------------------------------------------------------------AKAG 206 (464)
Q Consensus 192 ~~~~d~~~w~~-----------------------------------------------------------------~~~g 206 (464)
+.++||..++. .++.
T Consensus 361 hd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~v~yrlrDW 440 (880)
T 4arc_A 361 HDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDW 440 (880)
T ss_dssp TCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEEEEEEESCCCE
T ss_pred CCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCcccCCCCHHHHHHHHHHHHHHcCCcceeEEEEcccc
Confidence 00112211100 0011
Q ss_pred CCcccCCCCCCCCchhhH-HHH------------------------H-----------------------------HHh-
Q 012397 207 EPSWDSPWGPGRPGWHIE-CSA------------------------M-----------------------------SAH- 231 (464)
Q Consensus 207 ~~~~~~~wg~~~P~w~~~-~~~------------------------~-----------------------------~~~- 231 (464)
.++|+..||.++|.|+.+ |.. + ++.
T Consensus 441 ~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cpg~~~~retDtmDtw~dSswy~ 520 (880)
T 4arc_A 441 GVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYY 520 (880)
T ss_dssp ECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESSSSEEEECCCEECTTTGGGTHH
T ss_pred eeeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhCccceeeccCCCcceeCCCcCCCcccCcHHH
Confidence 134566799999988742 100 0 000
Q ss_pred --h---------cC-------CCeeEEEecccCccccchH---HHHHHhhcc----CCCCccEEEEeeeee-------e-
Q 012397 232 --Y---------LS-------SKFDIHGGGIDLIFPHHEN---EIAQSCAAC----QDSNVSYWMHNGHVT-------N- 278 (464)
Q Consensus 232 --~---------~~-------~~~~i~~~G~D~~~~h~~~---~~a~~~a~~----~~~~~~~~~~~~~v~-------~- 278 (464)
| +. .|+|++++|.||...|..+ |...+...+ ..||.++ +++|||+ .
T Consensus 521 ~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~l-l~qGmVl~~~~~~~d~ 599 (880)
T 4arc_A 521 ARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQL-LCQGMVLADAFYYVGE 599 (880)
T ss_dssp HHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEE-ECCCCEEEEEEEEECT
T ss_pred HhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHe-EEeceEeecceecccc
Confidence 0 00 2899999999988777533 333333333 2455666 6689996 2
Q ss_pred CCc------------------------------------ccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCC
Q 012397 279 NNE------------------------------------KMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYS 321 (464)
Q Consensus 279 ~G~------------------------------------KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~ 321 (464)
+|+ |||||+||+|+|.|++++||+|++|||+++. +++++++|+
T Consensus 600 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s 679 (880)
T 4arc_A 600 NGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQ 679 (880)
T ss_dssp TSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECC
T ss_pred CCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccC
Confidence 566 9999999999999999999999999999998 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccc-cCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q 012397 322 VLQLDSASDAVFYIYQTLQDCEVALSPFQ-EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINS 400 (464)
Q Consensus 322 ~~~~~~~~~~l~~l~~~~~~~~~~l~~~~-~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~ 400 (464)
.+.+.++.+.+.++|+++.+......... ........|+|++++++++++++.++|+++|+++.|++. |++|++.+|+
T Consensus 680 ~~~ie~a~rfl~rlwn~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~-l~efvn~l~k 758 (880)
T 4arc_A 680 ESGVEGANRFLKRVWKLVYEHTAKGDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAA-IMELMNKLAK 758 (880)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH-HHHHHHHHHh
Confidence 99999999999999999876654321100 011224567999999999999999999338999999999 9999999988
Q ss_pred HhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 401 SLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 401 ~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
|... . .....++.++++.++.||+ |+|+ +||+||+.|+..-+++.+.||
T Consensus 759 ~~~~---------~---~~~~~~l~~~l~~ll~LLaPf~Ph-iaEElW~~Lg~~~sv~~~~wP 808 (880)
T 4arc_A 759 APTD---------G---EQDRALMQEALLAVVRMLNPFTPH-ICFTLWQELKGEGDIDNAPWP 808 (880)
T ss_dssp SCCS---------S---HHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHTTCSSCGGGSCCC
T ss_pred hhcc---------c---hHHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHcCCCCeEEeCCCC
Confidence 6210 0 1123567889999999999 9999 999999999877788888888
|
| >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=432.09 Aligned_cols=384 Identities=17% Similarity=0.128 Sum_probs=284.0
Q ss_pred CCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHH-----------------------
Q 012397 36 VRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKII----------------------- 92 (464)
Q Consensus 36 ~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~----------------------- 92 (464)
.+++|.|++|||||+|++||||+|++++||+|+|++|+.|++|.++++++|+|.++-
T Consensus 117 ~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~ 196 (629)
T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRER 196 (629)
T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhccc
Confidence 467999999999999999999999999999999999999999999999999976521
Q ss_pred ----------------HHHHH-------------------cC-CChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchh--
Q 012397 93 ----------------RRAND-------------------LG-ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDH-- 134 (464)
Q Consensus 93 ----------------~~a~~-------------------~g-~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~-- 134 (464)
..+++ .| ..++.+++.+...|.+++++|||++ |.+.++|++
T Consensus 197 ~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~-D~~~~es~~~~ 275 (629)
T 2zue_A 197 GLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKY-DLLVWESDIVR 275 (629)
T ss_dssp TSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCC-SEEEEHHHHHH
T ss_pred ccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCcc-ccccCcCcccc
Confidence 11111 13 4558999999999999999999996 889999977
Q ss_pred HHHHHHHHHHHHHCCceE-----eecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccc--cccc------
Q 012397 135 MEQIKDMITQIINNDCAY-----VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF--ALWK------ 201 (464)
Q Consensus 135 ~~~~~~~~~~L~~~G~~y-----~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~--~~w~------ 201 (464)
...+++++++|.++|++| +.++..|+....+.....+.. .+..-.+|... | ...|+ ++||
T Consensus 276 ~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~~~~~-~v~~ksdG~~~----Y--~~~Diay~~~K~~ll~~ 348 (629)
T 2zue_A 276 RKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKNPI-LVLRRSDGTAT----Y--TGKDIAYHLWKFGKIDV 348 (629)
T ss_dssp TTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSCCE-EEEECTTSCBC----H--HHHHHHHHHHHTTCSCC
T ss_pred chhHHHHHHHHHHCCCccccccCCcCCcEEEECcccCCccccCc-eEEEecCCccc----c--chhhHHHHHHHhhcccc
Confidence 678999999999999999 556666665443211101000 01111122110 0 02355 4564
Q ss_pred --cccCC-CCcc-cCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEE--eee
Q 012397 202 --AAKAG-EPSW-DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMH--NGH 275 (464)
Q Consensus 202 --~~~~g-~~~~-~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~--~~~ 275 (464)
..+.. ...| ..+||+++|+= ...++..++|++.+.++ |.....+.+.++|.+..+..+.| +||
T Consensus 349 ~fr~~~~~~~~~~~~~wG~~~Pg~--------~~~~d~~IyV~g~~q~~---~~~~l~~~l~~lG~~~~~~~~~h~~~g~ 417 (629)
T 2zue_A 349 DLLYKEWDSTTWTTAPDGKSMPNK--------FGNANIVINVIGAEQKH---PQLAIKYALQLLGFEDAAANLYHLAYEH 417 (629)
T ss_dssp CCEEEECSSSCEEEEEEEEECTTS--------SCCCSEEEEEEEGGGHH---HHHHHHHHHHHTTCHHHHHTEEEEEECC
T ss_pred cccCCcccccccccCCCCCCCCCc--------cCCCCcEEEEEeCcHhh---HHHHHHHHHHHcCCCCCCCeEEEEEeee
Confidence 22221 2233 35899999950 01133345555554442 22222344444554321222344 488
Q ss_pred eeeCCcccccccC--CccCHHHHHHh---------------------------cCchhHHHHHhhcCCCCccCCCHHHHH
Q 012397 276 VTNNNEKMSKSLG--NFFTIRQITER---------------------------YHPLALRHFLISAHYRSPLNYSVLQLD 326 (464)
Q Consensus 276 v~~~G~KmSks~g--n~i~~~dll~~---------------------------~~~dalR~~ll~~~~~~~~~f~~~~~~ 326 (464)
|+++|+|||||+| |+|+++|++++ +|+||+||++++.++.++++||++.+.
T Consensus 418 V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~ 497 (629)
T 2zue_A 418 VERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVL 497 (629)
T ss_dssp EEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHS
T ss_pred EEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHH
Confidence 9999999999999 99999999998 999999999999988999999999998
Q ss_pred HHHHH-HHHHHHHHHHHHHhcCccccCC---------------CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHH
Q 012397 327 SASDA-VFYIYQTLQDCEVALSPFQEHG---------------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 390 (464)
Q Consensus 327 ~~~~~-l~~l~~~~~~~~~~l~~~~~~~---------------~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~y 390 (464)
+..++ ..|++|+++|++++++++.... ..++.|..|+..+.++++.+.+++ +++.++.++..
T Consensus 498 ~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~-~~~~p~~l~~y- 575 (629)
T 2zue_A 498 NFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAG-KDVKPHLIAWF- 575 (629)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHH-HTTCTHHHHHH-
T ss_pred HHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-
Confidence 77653 4599999999999997753221 113345789999999999999999 89886666655
Q ss_pred HHHHHHHHHHHhhhhcccCch-hhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 391 FQDALKFINSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 391 l~~l~~~~n~~~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
|+++++.+|+||+.|+++... ....+|+.++.++..+|++++.||||.|+
T Consensus 576 l~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~ap 626 (629)
T 2zue_A 576 ANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAP 626 (629)
T ss_dssp HHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999999887642 23568999999999999999999999887
|
| >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=429.84 Aligned_cols=381 Identities=13% Similarity=0.060 Sum_probs=280.1
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHH---HH----------------------
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI---IR---------------------- 93 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i---~~---------------------- 93 (464)
++.|++|+|||||++||||+|++++||+++|++|++|++|.++++++|+|..+ +.
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~ 183 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRA 183 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHH
Confidence 89999999999999999999999999999999999999999999999998532 11
Q ss_pred ---------------------HHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchh--HHHHHHHHHHHHHCCc
Q 012397 94 ---------------------RANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDH--MEQIKDMITQIINNDC 150 (464)
Q Consensus 94 ---------------------~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~--~~~~~~~~~~L~~~G~ 150 (464)
++.+.|. .+++++.+.+.|.+++++|||++ |.+.++|++ .+.+++++++|.++|+
T Consensus 184 y~~~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~~-D~~~~es~~~~~~~v~~~~~~L~~kG~ 261 (592)
T 1iq0_A 184 YVRLHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNARY-DLLVWESDIVRAGLLQKALALLEQSPH 261 (592)
T ss_dssp HHHHHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCCC-SEEEEHHHHHHTTHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCEe-EEeccCCcccccchHHHHHHHHHHCCC
Confidence 1133454 48999999999999999999996 888898876 6789999999999999
Q ss_pred eE-----eecCcEEEcCCCCCCCCCCCC--ccccccccCCCcccCCcccCcccc--cccc-------cccCCCCcccCCC
Q 012397 151 AY-----VVEGDVFFAVEKSPNYGRLSG--QRLENNRAGERVAVDSRKRNPADF--ALWK-------AAKAGEPSWDSPW 214 (464)
Q Consensus 151 ~y-----~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~g~~~~~~~~k~~~~d~--~~w~-------~~~~g~~~~~~~w 214 (464)
+| +.++..|+... .+|.-.+ ..+..-.+|... + ...|+ ++|| ..+ ..|..+|
T Consensus 262 ~y~~~~g~~~G~~~~~~~---~~g~~~~l~~~vi~ksdG~~~----Y--~~~D~a~~~~Kl~l~~~~~~~---~~~~~p~ 329 (592)
T 1iq0_A 262 VFRPREGKYAGALVMDAS---PVIPGLEDPFFVLLRSNGTAT----Y--YAKDIAFQFWKMGILEGLRFR---PYENPYY 329 (592)
T ss_dssp EECCSSSTTTTCEEEECT---TTSCSCSCCEEEEECTTSCBC----H--HHHHHHHHHHHTTSSCCCEEE---ECCCSSC
T ss_pred cccCcccCcCCCEEEech---hcCCCCCCCceEEEecCCceE----E--ecchHHHHHHHhhhhhhhhhh---hhhcCcc
Confidence 99 55666666543 3331000 000000122110 0 02344 4674 211 1245678
Q ss_pred CCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEe--eeeeeCCcccccccCCccC
Q 012397 215 GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHN--GHVTNNNEKMSKSLGNFFT 292 (464)
Q Consensus 215 g~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~--~~v~~~G~KmSks~gn~i~ 292 (464)
| +|.|+++|..|....++ ..|++.|.||. .|.....+...++|.+.+...+.|. |||+++|+|||||+||+|+
T Consensus 330 ~--r~~w~~~g~~~~~~~~~--~~iyV~g~~h~-~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~ 404 (592)
T 1iq0_A 330 P--GLRTSAPEGEAYTPKAE--ETINVVDVRQS-HPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVS 404 (592)
T ss_dssp T--TCEEEEEEEEECCCCCS--EEEEEEESSSC-CCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCB
T ss_pred h--hhcccccCcccCCCCCC--EEEEEEeccHH-HHHHHHHHHHHHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCCccC
Confidence 7 67998777665432343 34555555622 1111223334444542212223444 7899999999999999999
Q ss_pred HHHHHHh-------------------------cCchhHHHHHhhcCCCCccCCCHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 012397 293 IRQITER-------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSASD-AVFYIYQTLQDCEVAL 346 (464)
Q Consensus 293 ~~dll~~-------------------------~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~-~l~~l~~~~~~~~~~l 346 (464)
++|++++ +|+|++|||+++..+.++++||++.+.+..+ ...+++|+++|+++++
T Consensus 405 l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil 484 (592)
T 1iq0_A 405 VDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSIL 484 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 9999999 9999999999999889999999999998766 4569999999999999
Q ss_pred CccccCCC-----ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhh-------cccCc-hhh
Q 012397 347 SPFQEHGK-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNML-------KKKQP-KQQ 413 (464)
Q Consensus 347 ~~~~~~~~-----~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~-------~~~~~-~~~ 413 (464)
+++..... .++.|..|+..+.++++.+.+++ ++++++.++.. |+++++.+|+||+.| +++.. ...
T Consensus 485 ~k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~-~~~~p~~~~~y-l~~La~~fn~fy~~~~~~~~~~~vl~~~~~~ 562 (592)
T 1iq0_A 485 RKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAA-EERTPHVLAQY-LLDLAASWNAYYNARENGQPATPVLTAPEGL 562 (592)
T ss_dssp HHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHH-HHTCHHHHHHH-HHHHHHHHHHHHHCEETTEESSCSTTSCTTH
T ss_pred HhhcccCCCccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHHHHHHHHhccccccCCceeCCCHHH
Confidence 87642211 13345788999999999999999 89987777776 999999999999999 55443 223
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 414 QLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 414 ~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
..+|+.++.++..+|++++.||||.|+
T Consensus 563 ~~~RL~L~~a~~~vl~~~l~lLGi~~~ 589 (592)
T 1iq0_A 563 RELRLSLVQSLQRTLATGLDLLGIPAP 589 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 567999999999999999999999886
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-49 Score=432.26 Aligned_cols=206 Identities=17% Similarity=0.139 Sum_probs=172.9
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccCC-CCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhh-c
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-A 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~-~ 312 (464)
+|+|+|++|+||++||+.++.++..++.+. ++++.++|||||+++|+|||||+||+|+|.|++++||+|++|||+++ .
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~ 681 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHC
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcC
Confidence 389999999999999999988877776653 55566688999999999999999999999999999999999999985 5
Q ss_pred CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q 012397 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 392 (464)
Q Consensus 313 ~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~ 392 (464)
++++|++|+++.+.+..+.+.+++++++++..... .......+.|++++.+++++++.+.++| ++++++.|+...++
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~~--~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~~~~ 758 (810)
T 1wkb_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEYEV--KGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (810)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTCCC--CSCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccC--cccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 99999999999999999999999998877643211 0111123467899999999999999999 99999999986257
Q ss_pred HHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhh
Q 012397 393 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFL 451 (464)
Q Consensus 393 ~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~ 451 (464)
.+++.+|+|++..+.- .+.....++.++|+.++.+|+ |+|+ +||+||+.|+
T Consensus 759 ~l~~~~n~yi~~~k~~-------~~~~~~~~l~~~l~~l~~lLaP~~P~-~aEelw~~Lg 810 (810)
T 1wkb_A 759 SIMNDLRWYLRRTEGR-------DDEAKRYVLRTLADVWVRLMAPFTPH-ICEELWEKLG 810 (810)
T ss_dssp HHHHHHHHHHHHTTTC-------CCHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCc-------chhHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhcC
Confidence 9999999999877631 121225688899999999999 9999 9999999875
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=435.28 Aligned_cols=217 Identities=17% Similarity=0.129 Sum_probs=183.5
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccCC-CCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhh-c
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-A 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~-~ 312 (464)
+|+|+|++|+||++||+.++.++..++.+. ++++.+++||||+++|+|||||+||+|+|.|++++||+|++|||+++ .
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~ 681 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHHHhCC
Confidence 389999999999999999988887776653 55455688999999999999999999999999999999999999985 5
Q ss_pred CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q 012397 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 392 (464)
Q Consensus 313 ~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~ 392 (464)
++++|++|+.+.+.+..+.+.+++++++++.... ..........|+|++++++++++++.++| ++|+++.|+...++
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~--~~~~~~~~~~D~~il~~l~~~~~~v~~~~-e~~~f~~A~~~~~~ 758 (967)
T 1wz2_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE--VKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (967)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSSC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcCC--CCCcccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 8999999999999999999999999987764321 10111223468999999999999999999 99999999987246
Q ss_pred HHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 393 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 393 ~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
.+++.+|+|++.++.- .|.....+++++|+.++.+|+ |+|+ +||+||+.|+..-++++..||
T Consensus 759 ~l~~~~n~Yi~~~k~~-------~~~~~~~~l~~~l~~l~~LLaP~~P~-~aEeiw~~L~~~~sv~~~~wP 821 (967)
T 1wz2_A 759 SIMNDLRWYLRRTEGR-------DDEAKRYVLRTLADVWVRLMAPFTPH-ICEELWEKLGGEGFVSLAKWP 821 (967)
T ss_dssp HHHHHHHHHHHHTTTC-------CCHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHSSCCSCGGGSCCC
T ss_pred HHHHHHHHHHHhccch-------hHHHHHHHHHHHHHHHHHHhccccch-HHHHHHHhcCCCCceeccCCC
Confidence 8889999999887631 122455789999999999999 9999 999999999866688899888
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-48 Score=428.38 Aligned_cols=403 Identities=14% Similarity=0.095 Sum_probs=300.8
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
+..++|+|||.|||||+|+++++|+++|++|++|++|.++.|+|+||.+|+.+|.+.|++++++++++.+.|.+++++||
T Consensus 37 v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~LG 116 (878)
T 2v0c_A 37 VLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMG 116 (878)
T ss_dssp EEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 33345899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC---CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------CCC-CCCC-------------
Q 012397 122 CLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPN-YGRL------------- 171 (464)
Q Consensus 122 i~~~---~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~~~-~g~l------------- 171 (464)
++.+ ...+...+|.+.++++|.+|+++|++|++.+.++||+.| |+. ||..
T Consensus 117 i~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l 196 (878)
T 2v0c_A 117 ILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRI 196 (878)
T ss_dssp CCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECG
T ss_pred CccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEec
Confidence 9963 122444489999999999999999999999999999885 455 6531
Q ss_pred CC---c---cccc------------------------c-ccC-----------------C--------------------
Q 012397 172 SG---Q---RLEN------------------------N-RAG-----------------E-------------------- 183 (464)
Q Consensus 172 ~~---~---~~~~------------------------~-~~g-----------------~-------------------- 183 (464)
+. . .++. . ..| .
T Consensus 197 ~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~ 276 (878)
T 2v0c_A 197 TAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEK 276 (878)
T ss_dssp GGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGG
T ss_pred chhHHHHHHHhhhcCCCHHHHHHHHHHhccccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchh
Confidence 00 0 0000 0 000 0
Q ss_pred ---------------------------------C-----------------cccCC--------cccCccccccccc---
Q 012397 184 ---------------------------------R-----------------VAVDS--------RKRNPADFALWKA--- 202 (464)
Q Consensus 184 ---------------------------------~-----------------~~~~~--------~k~~~~d~~~w~~--- 202 (464)
. |..+. .-+.+.||..++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L 356 (878)
T 2v0c_A 277 REEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL 356 (878)
T ss_dssp HHHHHHHHHHHHTSCHHHHHCSSSCCCCEEEEEEEECTTTCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhhhhhhhhccceeeeEecCcEEECCCCCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCC
Confidence 0 00000 0000112211100
Q ss_pred --------------------------------------------------------------ccCCCCcccCCCCCCCCc
Q 012397 203 --------------------------------------------------------------AKAGEPSWDSPWGPGRPG 220 (464)
Q Consensus 203 --------------------------------------------------------------~~~g~~~~~~~wg~~~P~ 220 (464)
.++..++|+..||.++|.
T Consensus 357 ~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~WG~PIPi 436 (878)
T 2v0c_A 357 PIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPM 436 (878)
T ss_dssp CCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESCSSSEECCE
T ss_pred CceeeeCCCCccccccccccccCCeeEecCCCCCCcCHHHHHHHHHHHHHHCCCCCCceEEecccchhhcccccCCcccE
Confidence 011123566789999998
Q ss_pred hhhH-HH-------------------H-HH------------------------------------------Hhhc----
Q 012397 221 WHIE-CS-------------------A-MS------------------------------------------AHYL---- 233 (464)
Q Consensus 221 w~~~-~~-------------------~-~~------------------------------------------~~~~---- 233 (464)
|+.+ |. . .. ..+.
T Consensus 437 ~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtwfdSsw~~~~~~~p~~ 516 (878)
T 2v0c_A 437 VHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHN 516 (878)
T ss_dssp EEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHHHTSHHHHTTSTTC
T ss_pred EEECCCCeEecCHHHccccccchhhhhccccCCCChhhhhHhhcCCcCCCCCCcceeccccccccccccchhhhccCccc
Confidence 7631 10 0 00 0000
Q ss_pred -----C-------CCeeEEEecccCccccchH---HHHHHhhcc----CCCCccEEEEeeeeee----------------
Q 012397 234 -----S-------SKFDIHGGGIDLIFPHHEN---EIAQSCAAC----QDSNVSYWMHNGHVTN---------------- 278 (464)
Q Consensus 234 -----~-------~~~~i~~~G~D~~~~h~~~---~~a~~~a~~----~~~~~~~~~~~~~v~~---------------- 278 (464)
. .|+|++++|.||...|..+ |...+...+ ..||.++ +.||||+.
T Consensus 517 ~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l-~~~G~vl~~~~~~~~~~~~~~~~~ 595 (878)
T 2v0c_A 517 DRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGL-FTQGMVLAWTDFGPVEVEGSVVRL 595 (878)
T ss_dssp SSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBE-ECCCCEEEEEEEEEEEEETTEEEC
T ss_pred cccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhh-eecceEeccceeccccccccceec
Confidence 0 3899999999987666432 333333333 2467777 55799985
Q ss_pred -------------------------------CC-------cccccccCCccCHHHHHHhcCchhHHHHHhh-cCCCCccC
Q 012397 279 -------------------------------NN-------EKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLN 319 (464)
Q Consensus 279 -------------------------------~G-------~KmSks~gn~i~~~dll~~~~~dalR~~ll~-~~~~~~~~ 319 (464)
+| +|||||+||+|+|.|++++||+|++|||+++ .++++|++
T Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~ 675 (878)
T 2v0c_A 596 PEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMV 675 (878)
T ss_dssp CHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEE
T ss_pred cccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCce
Confidence 89 8999999999999999999999999999998 59999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcC-ccc--cCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Q 012397 320 YSVLQLDSASDAVFYIYQTLQDCEVALS-PFQ--EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK 396 (464)
Q Consensus 320 f~~~~~~~~~~~l~~l~~~~~~~~~~l~-~~~--~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~ 396 (464)
|+++.+.+..+.+.++++++......+. ... .....+..|++++++++++++++.++| ++|+++.|++. |++|++
T Consensus 676 fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~-e~~~f~~Ai~~-l~~f~~ 753 (878)
T 2v0c_A 676 WTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDL-EALRFNTAIAA-LMEFLN 753 (878)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHH
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH-HHHHHH
Confidence 9999999999999999998765543321 000 001124568999999999999999999 99999999999 999999
Q ss_pred HHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 397 FINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 397 ~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
.+|+|.+... .. .++.++|+.++.+|+ |+|+ +||+||+.|+ .-++++..||
T Consensus 754 ~l~k~~~~~~---------~~----~~l~~~l~~l~~LLaPf~P~-~aEElw~~Lg-~~sv~~~~wP 805 (878)
T 2v0c_A 754 ALYEYRKDRP---------VT----PVYRTAIRYYLQMLFPFAPH-LAEELWHWFW-PDSLFEAGWP 805 (878)
T ss_dssp HHHHHHHHCC---------SC----HHHHHHHHHHHHHHTTTSHH-HHHHHHHHHC-SSCGGGSCCC
T ss_pred HHhhhcccch---------hH----HHHHHHHHHHHHHHcccchH-HHHHHHHHcC-CCceeecCCC
Confidence 9999965310 01 467889999999999 9999 9999999998 5578888888
|
| >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-47 Score=398.84 Aligned_cols=361 Identities=12% Similarity=0.063 Sum_probs=277.6
Q ss_pred CCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHH------------------------
Q 012397 36 VRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI------------------------ 91 (464)
Q Consensus 36 ~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i------------------------ 91 (464)
.+++|.|++|||||+|++||||+|++++||+|+|+|++.|++|.++++++|+|..+
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l 220 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHL 220 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHH
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHH
Confidence 46899999999999999999999999999999999999999999999999987653
Q ss_pred ------------------------HHHHHH------cCCC-----hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhH-
Q 012397 92 ------------------------IRRAND------LGEN-----PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHM- 135 (464)
Q Consensus 92 ------------------------~~~a~~------~g~~-----~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~- 135 (464)
..+|++ .|.+ |+.+++.+...|.+++++|||.+ |.++++|++.
T Consensus 221 ~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~f-D~~~~ES~~~~ 299 (607)
T 1f7u_A 221 FDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKY-DVYSGESQVSK 299 (607)
T ss_dssp HHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-SEEEEGGGCCH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-eeecCcchhhh
Confidence 233443 3655 68899999999999999999986 8888988876
Q ss_pred HHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCC
Q 012397 136 EQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWG 215 (464)
Q Consensus 136 ~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg 215 (464)
+.+.+++++|.++|++|+.++.+|+....+ |. .+. +..+ ..++|.++|...
T Consensus 300 ~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~---g~----~~d------------------~~v~--~KsDG~~~Y~t~-- 350 (607)
T 1f7u_A 300 ESMLKAIDLFKEKGLTHEDKGAVLIDLTKF---NK----KLG------------------KAIV--QKSDGTTLYLTR-- 350 (607)
T ss_dssp HHHHHHHHHHHHTTCEEEETTEEEEEGGGT---CT----TTC------------------EEEE--ECTTSCCCHHHH--
T ss_pred hHHHHHHHHHHhCCCEEEECCcEEEEeccc---CC----CCC------------------ceeE--eccCCCcCCCCC--
Confidence 789999999999999999999999976643 21 000 0111 112333222110
Q ss_pred CCCCchhhHHHHHH--HhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCH
Q 012397 216 PGRPGWHIECSAMS--AHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTI 293 (464)
Q Consensus 216 ~~~P~w~~~~~~~~--~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~ 293 (464)
.+++.... ...++..++|+..|.|..|.+. .+...++|. ++...|.|.+|.+++ |||||+||+|++
T Consensus 351 ------Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~---~~~~~~lG~-~~~~~~~Hv~fg~v~--kMSkR~G~~v~L 418 (607)
T 1f7u_A 351 ------DVGAAMDRYEKYHFDKMIYVIASQQDLHAAQF---FEILKQMGF-EWAKDLQHVNFGMVQ--GMSTRKGTVVFL 418 (607)
T ss_dssp ------HHHHHHHHHHHHCCSEEEEECCGGGHHHHHHH---HHHHHHTTC-GGGGGEEEECCCCEE--SCCGGGTCCCBH
T ss_pred ------cHHHHHHHHhhcCCCcEEEEEcChHhhHHHHH---HHHHHHcCC-CcCcEEEEecccccc--cccCCCCCcccH
Confidence 01111010 1134445666666666444332 333444554 455568998886665 699999999999
Q ss_pred HHHHHhcCc----------------------------hhHHHHHhhcCCCCccCCCHHHHHHHHHHH-HHHHHHHHHHHH
Q 012397 294 RQITERYHP----------------------------LALRHFLISAHYRSPLNYSVLQLDSASDAV-FYIYQTLQDCEV 344 (464)
Q Consensus 294 ~dll~~~~~----------------------------dalR~~ll~~~~~~~~~f~~~~~~~~~~~l-~~l~~~~~~~~~ 344 (464)
+|++++++. .++||++++.++.++++||++.+.+..++. .|+||+++|+++
T Consensus 419 ~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~S 498 (607)
T 1f7u_A 419 DNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRS 498 (607)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHH
Confidence 999998733 589999999999999999999999887654 599999999999
Q ss_pred hcCcccc-C-------C---CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCch-h
Q 012397 345 ALSPFQE-H-------G---KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-Q 412 (464)
Q Consensus 345 ~l~~~~~-~-------~---~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~-~ 412 (464)
+++++.. . . ..++.+..|+..|.++++.+.+++ +++. |+.++.||++++..+|+||+.|++.... .
T Consensus 499 Ilrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~-~~~~-P~~l~~Yl~~La~~fn~fY~~~~Vl~~~~~ 576 (607)
T 1f7u_A 499 VERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAI-KTHE-PTTVVTYLFKLTHQVSSCYDVLWVAGQTEE 576 (607)
T ss_dssp HHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHH-HHCC-HHHHHHHHHHHHHHHHHHHHHCCSTTSCHH
T ss_pred HHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHH-HhcC-HHHHHHHHHHHHHHHHHHHHhCCCCCCCHH
Confidence 9987621 0 0 113456789999999999999999 7876 5566666999999999999999997643 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 413 QQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 413 ~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
...+|+.++.++..+|++++.||||.|+
T Consensus 577 ~~~aRL~L~~a~~~vL~~gL~LLGI~~p 604 (607)
T 1f7u_A 577 LATARLALYGAARQVLYNGMRLLGLTPV 604 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3568999999999999999999999887
|
| >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-45 Score=371.88 Aligned_cols=359 Identities=16% Similarity=0.134 Sum_probs=265.6
Q ss_pred CCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHH-------HHHHHH--cCCC-----
Q 012397 36 VRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI-------IRRAND--LGEN----- 101 (464)
Q Consensus 36 ~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i-------~~~a~~--~g~~----- 101 (464)
.+++|.|..++|||+|++||||+|++++||+++|++++.|++|...++++|+|..+ ..++.+ .|.+
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~ 107 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPE 107 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCS
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCch
Confidence 35799999999999999999999999999999999999999999999999999876 223232 1211
Q ss_pred --------------------------------hHHHHHHHHHHHHHHHHhcCCCCCCCCCCc-chhHHHHHHHHHHHHHC
Q 012397 102 --------------------------------PLSLSNRYCQEYLVDMADLQCLPPTYQPRV-SDHMEQIKDMITQIINN 148 (464)
Q Consensus 102 --------------------------------~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~-s~~~~~~~~~~~~L~~~ 148 (464)
++...+...+.|.+++++|||.+ |.+... +-+. .+.+++++|.++
T Consensus 108 ~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~f-D~~~~Ess~~~-~~~~vv~~L~~~ 185 (464)
T 3fnr_A 108 QYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKI-DSYVSERSYYD-ALNATLESLKEH 185 (464)
T ss_dssp SCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCC-SCEEEGGGGST-THHHHHHHHHHT
T ss_pred hhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-eeecCHHHHHH-HHHHHHHHHHHC
Confidence 01223344567889999999996 555444 4444 889999999999
Q ss_pred CceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhH-HHH
Q 012397 149 DCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIE-CSA 227 (464)
Q Consensus 149 G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~-~~~ 227 (464)
|++|+.++..|+..... | .+.|..+-| ++|. |.|.-. .++
T Consensus 186 g~~~e~dGa~~~~~~~~----------------g----------~~~~~vl~k--sDG~-----------~~Y~t~DiA~ 226 (464)
T 3fnr_A 186 KGIYEQEGKIWLASSQK----------------G----------DEKDRVIIR--EDGR-----------GTYLAADIVY 226 (464)
T ss_dssp TCEEEETTEEEECGGGG----------------T----------CSSCEEEEC--TTSC-----------BCHHHHHHHH
T ss_pred CCEEEeCCeEEEEeccc----------------C----------CCCceEEEe--CCCc-----------eehhhHHHHH
Confidence 99999999888865421 1 001222322 2443 333311 111
Q ss_pred HHHhh-cCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeee--CCc--ccccccCCccCHHHHHHhcCc
Q 012397 228 MSAHY-LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN--NNE--KMSKSLGNFFTIRQITERYHP 302 (464)
Q Consensus 228 ~~~~~-~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~--~G~--KmSks~gn~i~~~dll~~~~~ 302 (464)
...++ .+..-.|++.|.||.- |.....+.+.++|..++.-..+++|+|++ +|+ |||||+||+|+|.|+++++|+
T Consensus 227 ~~~r~~~~~d~~Iyv~G~dq~~-~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~ 305 (464)
T 3fnr_A 227 HKDKMSRGYGKCINIWGADHHG-YIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGS 305 (464)
T ss_dssp HHHHHTSSCSEEEEEEEGGGGG-GHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCH
T ss_pred HHHHHHcCCCeEEEEecCcHHH-HHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccH
Confidence 11121 1334568889999541 22223344445555443313356799966 886 999999999999999999999
Q ss_pred hhHHHHHhhcCCCCccCCCHHHHHHHH--HHHHHHHHHHHHHHHhcCccccCC---------CccCCChhHHHHHHHHHH
Q 012397 303 LALRHFLISAHYRSPLNYSVLQLDSAS--DAVFYIYQTLQDCEVALSPFQEHG---------KTARINPAAEDCINKLRD 371 (464)
Q Consensus 303 dalR~~ll~~~~~~~~~f~~~~~~~~~--~~l~~l~~~~~~~~~~l~~~~~~~---------~~~~~d~~l~~~l~~~~~ 371 (464)
|++|||+++.++.++++|+++.+.+.. |...+++|+++|++++++++.... ...+.|++|+..+.++++
T Consensus 306 dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~~~~~L~~~e~~Ll~~L~~~~~ 385 (464)
T 3fnr_A 306 DALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNLLFEALNLKA 385 (464)
T ss_dssp HHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTCCCTTCCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCccccChhhCChHHHHHHHHHHHHHH
Confidence 999999999989999999999998654 345699999999999987764211 111227899999999999
Q ss_pred HHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCch-hhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 372 ~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
.+.+++ ++++++.++.. |++++..+|+||+.|++.... +...+|+.++.++ +|++++.||||.||
T Consensus 386 ~v~~a~-~~~ep~~i~~y-L~~La~~~n~fY~~~~vl~~~~~~~~aRL~L~~a~--vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 386 VLNDAF-EARALQKIPDY-LKNLAANFHKFYNENKVVGSANENDLLKLFSLVAL--SIKTAFSLMGIEAK 451 (464)
T ss_dssp HHHHHH-HHTCTTHHHHH-HHHHHHHHHHHHHHCCCTTSTTHHHHHHHHHHHHH--HHHHHHHHTTCCCC
T ss_pred HHHHHH-HcCCHHHHHHH-HHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHHHH--HHHHHHHhcCCCch
Confidence 999999 89998888777 999999999999999997643 3467899999999 99999999999887
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=360.04 Aligned_cols=271 Identities=15% Similarity=0.200 Sum_probs=212.2
Q ss_pred EEEe--CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCcccc--HHH---HHHHHHc--CCCh----------
Q 012397 42 MYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD--DKI---IRRANDL--GENP---------- 102 (464)
Q Consensus 42 v~~~--~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g--~~i---~~~a~~~--g~~~---------- 102 (464)
.|+| +|||||++||||+|+++++|+++|+|+++|++|.|+.++||+| .+| +.++.++ |+++
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 4555 9999999999999999999999999999999999999999999 777 6666666 8888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCcch-hHH-HHHHHHHHHHHCC-ce---------------EeecCcEEEcC-C
Q 012397 103 LSLSNRYCQEYLVDMADLQCLPPTYQPRVSD-HME-QIKDMITQIINND-CA---------------YVVEGDVFFAV-E 163 (464)
Q Consensus 103 ~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~-~~~-~~~~~~~~L~~~G-~~---------------y~~~~~~~~~~-~ 163 (464)
+++++++.+.|.++|++|||++ |.+ ++|+ |.+ .+++++++|+++| .| |.. + |+.. .
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~-D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~~~~ 175 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEV-DLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWPAMV 175 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCC-EEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCSEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-eEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccC--C-ceeccc
Confidence 9999999999999999999974 777 8888 888 8999999999999 44 432 1 3332 2
Q ss_pred CCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCC-CCCCCchhhHHHHHHHhhcCCCeeEEEe
Q 012397 164 KSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGG 242 (464)
Q Consensus 164 ~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~w-g~~~P~w~~~~~~~~~~~~~~~~~i~~~ 242 (464)
-|+.||++... + +.. + . .+.+|.+ +.|.++|...| |.++|+|+++| +|.+.+++..++ ++
T Consensus 176 ~~~~~~~~~~~-~-~~~-~--------~-~~~~f~~----~~g~~~~~d~~~G~g~~~w~~d~-~~~~~~l~~~vd--~~ 236 (523)
T 1irx_A 176 YCPEHRREAEI-I-EWD-G--------G-WKVKYKC----PEGHEGWVDIRSGNVKLRWRVDW-PMRWSHFGVDFE--PA 236 (523)
T ss_dssp ECTTTCCEECE-E-EEC-S--------S-SCEEECC----SSSCCCEECTTSSCEEECHHHHH-HHHHHHSCCCBC--CE
T ss_pred cchhhCCcccc-c-ccC-C--------C-Cceeeee----cCCCccccCCcCCCCCCCCCcch-HhhHHHcCCCCc--CC
Confidence 37778875432 1 111 1 1 2334444 46788899999 99999999998 677778876555 88
Q ss_pred cccCcccc----chHHHHHHhhccCCCCccEEEEeeeeeeC--CcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCC
Q 012397 243 GIDLIFPH----HENEIAQSCAACQDSNVSYWMHNGHVTNN--NEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316 (464)
Q Consensus 243 G~D~~~~h----~~~~~a~~~a~~~~~~~~~~~~~~~v~~~--G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~ 316 (464)
|+||+++| +..++++ .+++.++| .++|+++++++ |+|||||+||+|++.|+++.|++|++|||+++.++.+
T Consensus 237 G~Dh~~~h~s~~~~~~i~~-~alG~~~p--~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~~~~~ 313 (523)
T 1irx_A 237 GKDHLVAGSSYDTGKEIIK-EVYGKEAP--LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNK 313 (523)
T ss_dssp EHHHHSTTSHHHHHHHHHH-HHHCCCCC--BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTS
T ss_pred CcCccCCCcchhhHHHHHH-HHhCCCCC--eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhcCCCC
Confidence 99999999 5677774 46665555 46899999997 8899999999999999999999999999999888899
Q ss_pred ccCCCHH-HHHHHHHHHHHHHHHH
Q 012397 317 PLNYSVL-QLDSASDAVFYIYQTL 339 (464)
Q Consensus 317 ~~~f~~~-~~~~~~~~l~~l~~~~ 339 (464)
+++|+++ .+.+..+.+.++++++
T Consensus 314 ~~~fs~~~~l~~~~~~~~~~~~~~ 337 (523)
T 1irx_A 314 EIKIDLGLGILNLYDEFEKVERIY 337 (523)
T ss_dssp CEEECCSTTHHHHHHHHHHHHHHH
T ss_pred CceeCcchhHHHHHHHHHHHHHHH
Confidence 9999999 8888887777666644
|
| >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-26 Score=238.78 Aligned_cols=254 Identities=17% Similarity=0.123 Sum_probs=180.0
Q ss_pred eCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 012397 45 CGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLP 124 (464)
Q Consensus 45 ~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 124 (464)
-+|+|||.|||||||++++.+.+|| ...| .++..+||.+. .....+|.+.|.++|++||+.+
T Consensus 31 FaPSPtG~LHIGhaRtal~n~l~Ar--~~gG---~fiLRieDTD~-------------~R~~~e~~~~I~edL~wLGl~w 92 (553)
T 1qtq_A 31 FPPEPNGYLHIGHAKSICLNFGIAQ--DYKG---QCNLRFDDTNP-------------VKEDIEYVESIKNDVEWLGFHW 92 (553)
T ss_dssp ECCCTTSCCBHHHHHHHHHHHHHHH--HTTC---EEEEEECCCCG-------------GGCCHHHHHHHHHHHHHTTCCC
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH--HcCC---EEEEEECCCCc-------------hhcCHHHHHHHHHHHHHcCCCC
Confidence 3699999999999999999888887 3444 55555555553 1235578999999999999998
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------CCC------CCCCCCcc-c---cccccCC---
Q 012397 125 PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------SPN------YGRLSGQR-L---ENNRAGE--- 183 (464)
Q Consensus 125 ~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------~~~------~g~l~~~~-~---~~~~~g~--- 183 (464)
++..+++|+|.+.+.++..+|+++|++|. +||... +.. |..++..+ + +++.+|.
T Consensus 93 de~~~~qSer~~~~~~~a~~Li~~G~AY~-----c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~ 167 (553)
T 1qtq_A 93 SGNVRYSSDYFDQLHAYAIELINKGLAYV-----DELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEE 167 (553)
T ss_dssp SSSCEEGGGGHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCT
T ss_pred CCCCeehcccHHHHHHHHHHHHHCCCcee-----cCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccC
Confidence 78889999999999999999999999994 555431 111 22222211 1 2334443
Q ss_pred -----C--cccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHH
Q 012397 184 -----R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256 (464)
Q Consensus 184 -----~--~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a 256 (464)
+ ++....+.+..||++|+....+.+.|..+| .+.|+|+.++... .+.. .++-.+.|.| |+.+.++
T Consensus 168 g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w-~g~PtY~la~vvD-Dh~~--GITHviRg~e----~~~n~~~ 239 (553)
T 1qtq_A 168 GKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKW-CIYPMYDFTHCIS-DALE--GITHSLCTLE----FQDNRRL 239 (553)
T ss_dssp TSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHHHH-HHHT--TCSEEEEEGG----GTTTHHH
T ss_pred CceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCC-ccccccccccEEE-eccC--CcceEeeccc----hhhhHHH
Confidence 1 122233456679999997767776666667 5689999876321 1122 2455555666 7777787
Q ss_pred HH---hhccCCCCccEEEEeeeeeeCCcccccccCC---------------ccCHHHHHHh-cCchhHHHHHhhcCCCCc
Q 012397 257 QS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALRHFLISAHYRSP 317 (464)
Q Consensus 257 ~~---~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn---------------~i~~~dll~~-~~~dalR~~ll~~~~~~~ 317 (464)
+. .+++...+++.| |++++.++|+|||||+|| ++++.++.+. |.|+|||.|+++..+...
T Consensus 240 q~~l~~alg~~~~P~~~-~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~ 318 (553)
T 1qtq_A 240 YDWVLDNITIPVHPRQY-EFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQ 318 (553)
T ss_dssp HHHHHHTSCCSCCCEEE-EECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHcCCCCCCCeE-EEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCC
Confidence 76 566544345554 678999999999999987 7789999976 999999999998866544
Q ss_pred c-CCCHHHHHHHHH
Q 012397 318 L-NYSVLQLDSASD 330 (464)
Q Consensus 318 ~-~f~~~~~~~~~~ 330 (464)
. .+++..+.+..+
T Consensus 319 ~~~~e~~~le~~~~ 332 (553)
T 1qtq_A 319 DNTIEMASLESCIR 332 (553)
T ss_dssp CCCBCHHHHHHHHH
T ss_pred ccccchhhHHHHHH
Confidence 3 368877776544
|
| >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-27 Score=242.03 Aligned_cols=256 Identities=21% Similarity=0.201 Sum_probs=174.3
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
+++..=+ +|+|||.|||||||++++.+.+|| ++.+.++..+||.+.+ ++ ...|.+.|.+++
T Consensus 95 g~v~tRF-aPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~---R~----------~~e~~~~I~edL 155 (553)
T 3aii_A 95 GEVVLRF-APNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR---RV----------DPEAYDMIPADL 155 (553)
T ss_dssp SCCEEEE-CCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG---GC----------CTTHHHHHHHHH
T ss_pred CceEEEe-CCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---cc----------cHHHHHHHHHHH
Confidence 4443333 599999999999999988777666 4566777777777653 11 335889999999
Q ss_pred HhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC----------CCCCCCCCCcc-c---cccccCC
Q 012397 118 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SPNYGRLSGQR-L---ENNRAGE 183 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~----------~~~~g~l~~~~-~---~~~~~g~ 183 (464)
++||+.+ +..+++|+|.+.+.+++.+|+++|++|. ++|... -..|..++..+ + +++..|.
T Consensus 156 ~wLGl~w-d~~~~qSdr~~~y~~~~~~Li~~G~AY~-----c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~ 229 (553)
T 3aii_A 156 EWLGVEW-DETVIQSDRMETYYEYTEKLIERGGAYV-----CTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMK 229 (553)
T ss_dssp HHHTCCC-SEEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSC
T ss_pred HHcCCCC-CCCcccccCHHHHHHHHHHHHHcCCcee-----CCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCC
Confidence 9999997 6789999999999999999999999994 555432 11243343321 1 1344443
Q ss_pred ------CcccC--CcccCcccccccccccCCCCcccCCCCC---CCCchhhHHHHHHHhhcCCCeeEEEecccCccccch
Q 012397 184 ------RVAVD--SRKRNPADFALWKAAKAGEPSWDSPWGP---GRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHE 252 (464)
Q Consensus 184 ------~~~~~--~~k~~~~d~~~w~~~~~g~~~~~~~wg~---~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~ 252 (464)
++..+ ....++.||++|+....+.+. ||. ++|+|+.+|... .+..| ++..+-|.| |+.
T Consensus 230 ~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp~----~Gd~~~g~PtYhfa~~vD-D~~~G--IThviRG~D----~~~ 298 (553)
T 3aii_A 230 EGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPR----TGTRYRVYPMMNFSVAVD-DHLLG--VTHVLRGKD----HLA 298 (553)
T ss_dssp TTSCEEEECCCTTCSSGGGTTCEEEEECCSCBTT----TBTSCCEEECHHHHHHHH-HHHTT--CCEEEC---------C
T ss_pred cCceEEEEEcccccCCCCCCCcEEEEecCCCCCc----cCCCceeeeeeeeeeeee-eccCC--CceEeccHh----hhh
Confidence 11112 223356799999875555543 777 489999998543 33343 556666788 666
Q ss_pred HHHHHH---hhccCCCCccEEEEeeeeeeCCcccccccCC---------------ccCHHHHHHh-cCchhHHHHHhhcC
Q 012397 253 NEIAQS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALRHFLISAH 313 (464)
Q Consensus 253 ~~~a~~---~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn---------------~i~~~dll~~-~~~dalR~~ll~~~ 313 (464)
+.+++. .+++ .+++++ .|+++++++|+|||||+|| ..++.++.+. |.|++||.|+++..
T Consensus 299 nt~~Q~~l~~alG-~~~P~y-~H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G 376 (553)
T 3aii_A 299 NREKQEYLYRHLG-WEPPEF-IHYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIG 376 (553)
T ss_dssp HHHHHHHHHHHHT-CCCCEE-ECCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcC-CCCCeE-EEeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 766665 3444 345555 5999999999999999997 7789999986 99999999999887
Q ss_pred C-CCccCCCHHHHHHHHHH
Q 012397 314 Y-RSPLNYSVLQLDSASDA 331 (464)
Q Consensus 314 ~-~~~~~f~~~~~~~~~~~ 331 (464)
+ .++.+|+++.+.++.+.
T Consensus 377 ~s~~~~~~s~~~L~~~~r~ 395 (553)
T 3aii_A 377 VKIADSTMSWKKIYGLNRS 395 (553)
T ss_dssp TCSSCBCCCHHHHHHHHHH
T ss_pred CCCccccccHHHHHHHHHH
Confidence 7 68999999999877654
|
| >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-25 Score=236.71 Aligned_cols=261 Identities=17% Similarity=0.113 Sum_probs=186.2
Q ss_pred CcceEEEe--CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 012397 38 GKVGMYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (464)
Q Consensus 38 ~~~~v~~~--~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 115 (464)
+++.-++| +|+|||.|||||||++++...+|| ++.+.|+..+||.+.+ | -...|.+.|.+
T Consensus 62 g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~---R----------~~~e~~~~Ile 123 (851)
T 2hz7_A 62 GKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE---L----------ARQEYVDSIAD 123 (851)
T ss_dssp TSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT---T----------CCHHHHHHHHH
T ss_pred CCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---c----------ccHHHHHHHHH
Confidence 44444556 899999999999999998877777 3455666666666642 1 14578999999
Q ss_pred HHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------CC------CCCCCCCcc-c---c
Q 012397 116 DMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------SP------NYGRLSGQR-L---E 177 (464)
Q Consensus 116 ~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------~~------~~g~l~~~~-~---~ 177 (464)
+|++||+.+++..+++|+|.+.+.+++.+|+++|++|. |||... +. .|..++..+ + +
T Consensus 124 dL~wLGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~-----c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe 198 (851)
T 2hz7_A 124 DLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYV-----ESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLR 198 (851)
T ss_dssp HHHHHTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHH
T ss_pred HHHHcCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEe-----ecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHH
Confidence 99999999878889999999999999999999999994 555431 11 133333321 1 2
Q ss_pred ccccCC--------C--cccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCc
Q 012397 178 NNRAGE--------R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 247 (464)
Q Consensus 178 ~~~~g~--------~--~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~ 247 (464)
++.+|. | ++....+.+..||++|+....+.+.|..+| .+.|+||++|... .+..| ++..+-|.|
T Consensus 199 ~m~~G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w-~g~PtYhfA~vVD-D~~~G--ITHViRG~D-- 272 (851)
T 2hz7_A 199 RMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEW-HIYPAYDFEHPLQ-DAIEG--VTHSMCSLE-- 272 (851)
T ss_dssp HHHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHHHH-HHHHT--CSEEEEEGG--
T ss_pred HHhcCCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCC-ccccccceeeEee-eccCC--cceeecchh--
Confidence 344454 2 222233456679999998777777777788 5689999998643 33343 555566778
Q ss_pred cccchHHHHHH---hhccCCCCccEEEEeeeeeeCCcccccccCC---------------ccCHHHHHHh-cCchhHHHH
Q 012397 248 FPHHENEIAQS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALRHF 308 (464)
Q Consensus 248 ~~h~~~~~a~~---~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn---------------~i~~~dll~~-~~~dalR~~ 308 (464)
|+.+.+.+. .+++....++.| |++++.++|+|||||+|| .+++.++.+. |.|++||.|
T Consensus 273 --~~~n~~~q~~l~~alG~~~~P~~~-~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~f 349 (851)
T 2hz7_A 273 --FVDNRAIYDWLMEKLNFDPRPHQY-EFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAF 349 (851)
T ss_dssp --GTTTHHHHHHHHHHTTCSSCCEEE-EECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHH
T ss_pred --hhhChHHHHHHHHHcCCCCCCCce-EEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHH
Confidence 666666554 566544324443 678999999999999987 6789999976 999999999
Q ss_pred HhhcCCCC-ccCCCHHHHHHHHH
Q 012397 309 LISAHYRS-PLNYSVLQLDSASD 330 (464)
Q Consensus 309 ll~~~~~~-~~~f~~~~~~~~~~ 330 (464)
+++..+.. +..+++..+.....
T Consensus 350 l~~lG~s~~~~~~e~~~le~~~r 372 (851)
T 2hz7_A 350 AAQIGVSRTNRTVDIAVYENAVR 372 (851)
T ss_dssp HHHSCCCSSCEEECHHHHHHHHH
T ss_pred HHhcCCCCCcccccHHHHHHHHH
Confidence 99886653 44467777764433
|
| >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=207.12 Aligned_cols=241 Identities=18% Similarity=0.178 Sum_probs=165.5
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|||.|||||+|+++....+|| ++.+.|+..++|.+. .| -...+.+.|.++|++||+.++
T Consensus 7 APSPtG~lHiG~artal~n~l~Ar-----~~~G~filRieDtD~---~R----------~~~~~~~~i~~dL~wLGl~wd 68 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYAR-----HRGGKFILRIEDTDR---ER----------SRPEYTENILEGLQWLGLTWD 68 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCSS---SS----------CCHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEeeCCc---cc----------cchHHHHHHHHHHHHcCCCCC
Confidence 589999999999999988777776 344555555555542 11 125688999999999999975
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCC-----------------CCC-CCCCCCCccc-cccccCC---
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVE-----------------KSP-NYGRLSGQRL-ENNRAGE--- 183 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~-----------------~~~-~~g~l~~~~~-~~~~~g~--- 183 (464)
+..+++|++.+.+++++++|+++|++|. |||.. ..+ .|+.++..+. +.+.+|.
T Consensus 69 e~~~~QS~r~~~y~~~~~~Li~~G~AY~-----c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~ 143 (492)
T 2cfo_A 69 EGPYFQSDRLDLYRQAIQTLLDKGLAYY-----CYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPV 143 (492)
T ss_dssp EEEEEGGGCHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCE
T ss_pred CCCccccCCHHHHHHHHHHHHHCCCceE-----ecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCce
Confidence 5688999999999999999999999994 66644 122 2665554322 1122332
Q ss_pred -CcccCC----------------cccCc-ccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEeccc
Q 012397 184 -RVAVDS----------------RKRNP-ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 245 (464)
Q Consensus 184 -~~~~~~----------------~k~~~-~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D 245 (464)
|+..+. ...+. .||++||... .+ |.|.|+|+.+|... .... .++-.+-|.|
T Consensus 144 iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~-------~p-~~G~PtY~la~vvD-D~~~--gIthviRG~D 212 (492)
T 2cfo_A 144 IRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAP-------RG-EIGYPLYNLVVVVD-DIAM--GITDVIRGED 212 (492)
T ss_dssp EEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCC-------TT-SCCCBCHHHHHHHH-HHHT--TCSEEEEEGG
T ss_pred EEEEcCCCCceEEEecceeeeeecccccCCCeEEEEecC-------CC-CCCceeehhhhhhh-hhcC--CCCeEEEchh
Confidence 111110 12344 6899998632 23 46899999988532 1223 3666777889
Q ss_pred CccccchHHHHHH---hhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHh-cCchhHHHHHhhcCCC----C
Q 012397 246 LIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYR----S 316 (464)
Q Consensus 246 ~~~~h~~~~~a~~---~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~~~----~ 316 (464)
|+.+.+.+. .+++.++| .|.|.++++ .+|+|||||+||+ ++.++.+. |.|+++|.|++...+. .
T Consensus 213 ----~~~~t~~q~~l~~alg~~~P--~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG~s~~~~~ 285 (492)
T 2cfo_A 213 ----HIGNTPKQILLYEALGATPP--NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLGWSPPEGV 285 (492)
T ss_dssp ----GTTHHHHHHHHHHHTTCCCC--EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTTBCCCTTT
T ss_pred ----hhhCHHHHHHHHHHcCCCCc--eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCCCCcc
Confidence 666666555 45554433 568888865 4999999999995 89999974 9999999999885332 2
Q ss_pred ccCCCHHHHHH
Q 012397 317 PLNYSVLQLDS 327 (464)
Q Consensus 317 ~~~f~~~~~~~ 327 (464)
.--|+.+.+.+
T Consensus 286 ~e~~~~~e~i~ 296 (492)
T 2cfo_A 286 GELFTLDLAAK 296 (492)
T ss_dssp CSCCCHHHHHH
T ss_pred ccccCHHHHHh
Confidence 34577766653
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-22 Score=195.11 Aligned_cols=207 Identities=14% Similarity=0.134 Sum_probs=125.1
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|||+|||||+|+++.....|| ++.+.++..++|.+.+ ++ ...+.+.|.++|++|||.++
T Consensus 11 APsPtG~LHiG~~rtal~n~l~Ar-----~~~g~~ilRieDtD~~---R~----------~~~~~~~I~~dL~~LGl~~D 72 (298)
T 1nzj_A 11 APSPSGELHFGSLIAALGSYLQAR-----ARQGRWLVRIEDIDPP---RE----------VPGAAETILRQLEHYGLHWD 72 (298)
T ss_dssp CCCTTSCCCHHHHHHHHHHHHHHH-----HTTCEEEEEECCSCGG---GS----------CTTHHHHHHHHHHHTTCCCS
T ss_pred CcCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEecCCch---hh----------HHHHHHHHHHHHHHcCCCCC
Confidence 589999999999999986666555 4456666666666643 11 14588999999999999976
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEee---------cCcEEEcCCCC-CCCCCCC---------CccccccccCCCcc
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVV---------EGDVFFAVEKS-PNYGRLS---------GQRLENNRAGERVA 186 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~---------~~~~~~~~~~~-~~~g~l~---------~~~~~~~~~g~~~~ 186 (464)
+..+++|++.+.+++++++|+++|++|.. .+.+|.+.... +.+|... .....++..|. +.
T Consensus 73 ~~~~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~-~~ 151 (298)
T 1nzj_A 73 GDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGI-IH 151 (298)
T ss_dssp SCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEE-EE
T ss_pred CCCeeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcc-cc
Confidence 66889999999999999999999999963 12222221110 1122211 00111222221 11
Q ss_pred cCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHh---hccC
Q 012397 187 VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC---AACQ 263 (464)
Q Consensus 187 ~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~---a~~~ 263 (464)
.. .+.+..||++||. .+.|+|+++|.. -....|.+.+|+ |.| |..+.+.+.. +++.
T Consensus 152 ~~-~~~~~~D~VL~R~-------------dG~PtY~la~vv-dD~~~giThvIr--G~D----~l~~t~~q~~l~~alG~ 210 (298)
T 1nzj_A 152 AD-EKLAREDFIIHRR-------------DGLFAYNLAVVV-DDHFQGVTEIVR--GAD----LIEPTVRQISLYQLFGW 210 (298)
T ss_dssp CC-HHHHHSCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEEEE--EGG----GHHHHHHHHHHHHHHTC
T ss_pred cC-cccCCCCEEEECC-------------CCCEeeeeeeee-EHHhcCCCEEEe--Ccc----ccccHHHHHHHHHHcCC
Confidence 11 1124468888875 478999999865 355677677777 889 6666666654 3343
Q ss_pred CCCccEEEEeeee-eeCCcccccccCCccCHHH
Q 012397 264 DSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQ 295 (464)
Q Consensus 264 ~~~~~~~~~~~~v-~~~G~KmSks~gn~i~~~d 295 (464)
+++.+ .|.+++ ..+|+|||||+||+ ++++
T Consensus 211 -~~p~~-~H~pll~~~~g~KLSKR~g~~-~v~~ 240 (298)
T 1nzj_A 211 -KVPDY-IHLPLALNPQGAKLSKQNHAP-ALPK 240 (298)
T ss_dssp -CCCEE-EEECBCCC--------------CCCS
T ss_pred -CCCeE-EEeeeeECCCCCcccccCCcc-Chhc
Confidence 44554 788887 45999999999996 4443
|
| >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=186.95 Aligned_cols=229 Identities=18% Similarity=0.213 Sum_probs=147.2
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
-.+.+.-.+|+|||+|||||+|+++++|.+||. ..|.-++.+..+| . ....+.+.+.+.++|
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD---~-------------~r~~~~~~~~I~~~l 72 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTD---L-------------ERSEREYEEKLMESL 72 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSS---C-------------CSGGGHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCC---c-------------cccHHHHHHHHHHHH
Confidence 356677788999999999999999999999996 7887777766554 1 222345778889999
Q ss_pred HhcCCCCCCC--------CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC--------------CC------CC
Q 012397 118 ADLQCLPPTY--------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--------------PN------YG 169 (464)
Q Consensus 118 ~~lgi~~~~~--------~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~--------------~~------~g 169 (464)
++||+.++.. ..++|++.+.++++.++|+++|.+| .+||..+. +. |.
T Consensus 73 ~wlGl~~de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY-----~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r 147 (481)
T 2o5r_A 73 RWLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAY-----YVYAYPEEIEEMREKLLSEGKAPHYSQEMFEK 147 (481)
T ss_dssp HHHTCCCSBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEE-----EECCCSTTTHHHHHHHHHTTCCCCBCGGGGTT
T ss_pred HHcCCCCCCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCee-----EecCCHHHHHHHHHHHHhcCCCCCCCCchhhh
Confidence 9999986332 2578899999999999999999999 34444320 00 22
Q ss_pred CCCCcccc-ccccCCC----cccCC---------------cccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHH
Q 012397 170 RLSGQRLE-NNRAGER----VAVDS---------------RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMS 229 (464)
Q Consensus 170 ~l~~~~~~-~~~~g~~----~~~~~---------------~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~ 229 (464)
.++..+.. .+.+|.. +..+. ......|+.++| .++.|+|+.++.. -
T Consensus 148 ~l~~~e~~~~~~~G~~~~iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R-------------sDG~ptY~~a~vv-D 213 (481)
T 2o5r_A 148 FDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMR-------------SNGLPTYNFACVV-D 213 (481)
T ss_dssp TCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTEEEEECTTSSCBEEEEC-------------TTSCBCHHHHHHH-H
T ss_pred cCCHHHHHHHHhcCCcceEEEEcCCCceEEEecccceeEeccccCCCeEEEc-------------cCCCcchhhHHHH-H
Confidence 22211100 0111210 00000 000112333333 3578899877642 2
Q ss_pred HhhcCCCeeEEEecccCccccchHH---HHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHh-cCchh
Q 012397 230 AHYLSSKFDIHGGGIDLIFPHHENE---IAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER-YHPLA 304 (464)
Q Consensus 230 ~~~~~~~~~i~~~G~D~~~~h~~~~---~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~-~~~da 304 (464)
....+ ++-.+.|.| |+.+. ..+..+++.++| . +.|.++++. +|+|||||+|++ +++++++. |.|++
T Consensus 214 D~~~g--ithvirG~D----~~~~t~~q~~l~~aLG~~~p-~-~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~pea 284 (481)
T 2o5r_A 214 DMLME--ITHVIRGDD----HLSNTLRQLALYEAFEKAPP-V-FAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPEA 284 (481)
T ss_dssp HHHTT--CSEEEEEGG----GHHHHHHHHHHHHHTTCCCC-E-EEEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHHH
T ss_pred HHhCC--CCeEEEChh----HHHhHHHHHHHHHHcCCCCC-e-EEEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHHH
Confidence 23344 455568889 55443 344456665544 3 688887554 899999999997 89999984 77778
Q ss_pred HHHHHhhc
Q 012397 305 LRHFLISA 312 (464)
Q Consensus 305 lR~~ll~~ 312 (464)
++.|++..
T Consensus 285 l~~~l~~l 292 (481)
T 2o5r_A 285 LVNYLALL 292 (481)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHHh
Confidence 77777654
|
| >4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.7e-18 Score=171.70 Aligned_cols=248 Identities=19% Similarity=0.162 Sum_probs=151.3
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|||.+||||+|+++..+.+|| ...|.-++.+..+| . . .....|.+.|.++|++|||.++
T Consensus 31 APSPTG~lHiG~~rtal~n~l~Ar--~~~G~filRieDtD---~---~----------R~~~~~~~~i~~dl~wlGl~~d 92 (490)
T 4g6z_A 31 APSPTGFIHLGNIRSALYPWAFAR--KMKGTFVLRIEDTD---V---E----------RSSQEAVDAILEGMAWLGLDYD 92 (490)
T ss_dssp CCCCCSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCC---G---G----------GCCHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH--hcCCeEEEEeCCCC---c---c----------cccHHHHHHHHHHHHHcCCCCC
Confidence 488999999999999999999888 34565555555444 2 1 1135688999999999999975
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC------------------CCCCCCCCccccccccCCCccc
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------------PNYGRLSGQRLENNRAGERVAV 187 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~------------------~~~g~l~~~~~~~~~~g~~~~~ 187 (464)
+...++|++.+.+++++.+|+++|++| .|||..+. ..|..++........+|....+
T Consensus 93 ~~~~~qS~r~~~y~~~~~~Li~~G~aY-----~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~ 167 (490)
T 4g6z_A 93 EGPYYQMQRMDRYREVLAQMQEKGLVY-----PCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVL 167 (490)
T ss_dssp EEEEEGGGCHHHHHHHHHHHHHTTSEE-----EECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEE
T ss_pred CCCcccccCHHHHHHHHHHHHHCCCEE-----eCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceE
Confidence 556789999999999999999999999 55554320 1122232211111111111000
Q ss_pred CCcccCccc-ccccccccCCCC--------cccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHH
Q 012397 188 DSRKRNPAD-FALWKAAKAGEP--------SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258 (464)
Q Consensus 188 ~~~k~~~~d-~~~w~~~~~g~~--------~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~ 258 (464)
. .+ .|.+ -..|...-.|.. .+.....++.|+|+.++... ....| ++-.+-|.| |..+.+.+.
T Consensus 168 R-~k-~~~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVD-D~~mg--IThViRG~D----~l~~tprq~ 238 (490)
T 4g6z_A 168 R-FR-NPLTGTVAWDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVD-DLDMG--ITHVIRGDD----HVNNTPRQI 238 (490)
T ss_dssp E-EC-CCCSSEEEEEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHH-HHHTT--CCEEEEEGG----GGGGHHHHH
T ss_pred E-Ee-cCCCCcEEEEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHHH-HHhcC--CCEEEeccc----cccChHHHH
Confidence 0 00 0000 011111000100 00112245778888765321 22344 444455889 665555443
Q ss_pred ---hhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHH-hcCchhHHHHHhhcC--CCCccCCCHHHHHHH
Q 012397 259 ---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAH--YRSPLNYSVLQLDSA 328 (464)
Q Consensus 259 ---~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~~--~~~~~~f~~~~~~~~ 328 (464)
.+++.++| .+.|...++. +|+|||||.|. +++.++.+ .|.|++++-|++... ....--|+.+++.+.
T Consensus 239 ~l~~aLG~~~P--~f~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~eli~~ 312 (490)
T 4g6z_A 239 NILRALGGEVP--VYAHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQFVEW 312 (490)
T ss_dssp HHHHHTTCCCC--EEEEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHHHHHH
T ss_pred HHHHHcCCCCC--eEEEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHHHHhh
Confidence 45565544 3577777766 89999999997 78998886 499999999998753 333445788777643
|
| >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=176.37 Aligned_cols=236 Identities=16% Similarity=0.174 Sum_probs=152.7
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|||.|||||+|+++....+|| ...|. |+.-++|.+.+ | ....+.+.|.++|++||+.++
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar--~~~G~---filRieDtD~~---R----------~~~~~~~~I~~dl~wlGl~wd 68 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWAR--RNGGR---FIVRIEDTDRA---R----------YVPGAEERILAALKWLGLSYD 68 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHH--HTTCE---EEECBCCCCTT---S----------CCTTHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH--HcCCE---EEEEeCcCCCc---c----------cChHHHHHHHHHHHHcCCCCC
Confidence 588999999999999999999988 44554 55555555531 1 123478899999999999974
Q ss_pred CCC--------CCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCCCCCcccc-ccccCCC
Q 012397 126 TYQ--------PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRLSGQRLE-NNRAGER 184 (464)
Q Consensus 126 ~~~--------~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~l~~~~~~-~~~~g~~ 184 (464)
... .++|++.+.+++...+|+++|++| .|||... ...|..++..+.. .+.+|..
T Consensus 69 ~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY-----~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~ 143 (468)
T 1j09_A 69 EGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAY-----RAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEP 143 (468)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEE-----EECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeE-----EcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCC
Confidence 433 689999999999999999999999 4454321 1124334332211 1112221
Q ss_pred ----cccCC----------------cccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecc
Q 012397 185 ----VAVDS----------------RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (464)
Q Consensus 185 ----~~~~~----------------~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~ 244 (464)
+..+. ......|+.++|. ++.|+|+.++.. -....| ++-.+-|.
T Consensus 144 ~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R~-------------dg~PtY~~a~vv-DD~~~g--ithvirG~ 207 (468)
T 1j09_A 144 HVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKS-------------DGYPTYHLANVV-DDHLMG--VTDVIRAE 207 (468)
T ss_dssp CEEEECCCSSCEEEEEETTTEEEEEEGGGSCCCEEECT-------------TSCBCHHHHHHH-HHHHTT--CCEEEEEG
T ss_pred ceEEEecCCCCceEEEeccceeEeecccCCCCeEEEec-------------CCCeeehhHHHH-HHHHCC--CCeEEECh
Confidence 00000 0011134444443 578899887642 233344 44445588
Q ss_pred cCccccchHHHHH---HhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHh-cCchhHHHHHhhcCCC---C
Q 012397 245 DLIFPHHENEIAQ---SCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYR---S 316 (464)
Q Consensus 245 D~~~~h~~~~~a~---~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~~~---~ 316 (464)
| |+.+.+.+ ..+++.++| .+.|.++++. +|+|||||+|+. ++.++.+. |.|+++|.|++...+. .
T Consensus 208 D----~~~~t~~q~~l~~alg~~~p--~~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~~~~~ 280 (468)
T 1j09_A 208 E----WLVSTPIHVLLYRAFGWEAP--RFYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFSMPDG 280 (468)
T ss_dssp G----GGGGHHHHHHHHHHHTCCCC--EEEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCCCTTC
T ss_pred h----hhhhHHHHHHHHHHcCCCCC--eEEEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhccCCccc
Confidence 9 55554443 355665443 3477777654 899999999997 89999874 8999999999875332 2
Q ss_pred ccCCCHHHHHH
Q 012397 317 PLNYSVLQLDS 327 (464)
Q Consensus 317 ~~~f~~~~~~~ 327 (464)
...|+.+++.+
T Consensus 281 ~~~~~~~el~~ 291 (468)
T 1j09_A 281 REIFTLEEFIQ 291 (468)
T ss_dssp CSCCCHHHHHH
T ss_pred ccCCCHHHHHh
Confidence 24688777654
|
| >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.8e-18 Score=176.83 Aligned_cols=224 Identities=18% Similarity=0.176 Sum_probs=146.3
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
+++++=+. |+|||+|||||+|+++.++.+||. ..|.-++.+ +|.+. ..-...+.+.|.++|
T Consensus 128 ~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRi---eDtD~-------------~r~~~~~~~~I~~dL 188 (592)
T 3al0_C 128 ELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRI---EDTDT-------------ERSSREYEQQILESL 188 (592)
T ss_dssp CCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECB---CCCCS-------------SSCCHHHHHHHHHHH
T ss_pred CeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEe---cCcCh-------------hhccHHHHHHHHHHH
Confidence 45666666 999999999999999999999994 566655554 44331 122456888999999
Q ss_pred HhcCCCCCCC--------CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------CCCCCCCCCccccccccCC
Q 012397 118 ADLQCLPPTY--------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------SPNYGRLSGQRLENNRAGE 183 (464)
Q Consensus 118 ~~lgi~~~~~--------~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------~~~~g~l~~~~~~~~~~g~ 183 (464)
++||+.++.. ..++|++.+.+++.+.+|+++|++| .|||... .+.|..- ...+.+|.
T Consensus 189 ~wlGl~~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY-----~c~ct~~el~~~~~~~Y~~~----~~~~~~g~ 259 (592)
T 3al0_C 189 RWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY-----YVVYDKEDPSKELFTTYEYP----HEYKEKGH 259 (592)
T ss_dssp HHTTCCCSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEE-----EEEEETTEEEEECCCCSSCC----HHHHHTTC
T ss_pred HHcCCCCCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCce-----EecCCHHHHHhhcCCCCCcH----HHHhhcCC
Confidence 9999996332 2588999999999999999999999 4454331 1111110 00000110
Q ss_pred C-----------ccc--------CCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecc
Q 012397 184 R-----------VAV--------DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (464)
Q Consensus 184 ~-----------~~~--------~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~ 244 (464)
. +.+ ........|+.+||. ++.|+|+.++.. -....|.+..| -|.
T Consensus 260 ~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------dg~ptY~~a~vv-DD~~~githvi--rG~ 323 (592)
T 3al0_C 260 PVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKS-------------NGFPTYNFAVVV-DDHLMRISHVF--RGE 323 (592)
T ss_dssp CEEEEECCCSSCCEECCTTTCSEECCSSSSCCEEEECT-------------TSCCCHHHHHHH-HHHHTTCSBCC--EEG
T ss_pred CceEEEECCCCCceeeecccceeeeccccCCCeEEEcC-------------CCCeehhhHHHH-HHHhcCCCeEE--Ech
Confidence 0 000 000012235555543 578899887642 23334544444 578
Q ss_pred cCccccchHHHHHH---hhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHH-hcCchhHHHHHhhc
Q 012397 245 DLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA 312 (464)
Q Consensus 245 D~~~~h~~~~~a~~---~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~ 312 (464)
| |+.+.+.+. .+++.++| . +.|..+++. +|+|||||+|+ +++.++.+ .|.|+++|.|++..
T Consensus 324 D----~~~~t~~q~~l~~alg~~~P-~-~~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~l 389 (592)
T 3al0_C 324 D----HLSNTPKQLMIYEAFGWEAP-V-FMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALL 389 (592)
T ss_dssp G----GGGGHHHHHHHHTTTTCCCC-B-CCEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTT
T ss_pred h----hHhCHHHHHHHHHHhCCCCC-e-EEEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHh
Confidence 9 665555444 45554443 3 367677654 89999999999 68999998 58999999999875
|
| >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-17 Score=169.14 Aligned_cols=231 Identities=18% Similarity=0.179 Sum_probs=148.7
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|||.|||||+|+++....+|| ...|. ++.-++|.+. ..-...+.+.|.++|++||+.++
T Consensus 31 APsPtG~LHiG~~rtal~n~l~Ar--~~~G~---filRieDtD~-------------~R~~~~~~~~I~~dL~wlGl~wD 92 (488)
T 3afh_A 31 APSPTGHLHVGGARTALFNWMFAR--KEGGK---FILRIEDTDT-------------ERSSREYEQQILESLRWCGLDWD 92 (488)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHH--HHTCE---EEECBCCCCT-------------TTCCHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH--HcCCE---EEEEEeeCCc-------------ccccHHHHHHHHHHHHHcCCCCC
Confidence 589999999999999999999988 44555 4445555543 11234578889999999999964
Q ss_pred CC--------CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC------CCCCCCCCccccccccCCC----ccc
Q 012397 126 TY--------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------PNYGRLSGQRLENNRAGER----VAV 187 (464)
Q Consensus 126 ~~--------~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~------~~~g~l~~~~~~~~~~g~~----~~~ 187 (464)
.. ..++|++.+.+++.+++|+++|++| .|||..+. +.|..- ...+.+|.. +..
T Consensus 93 e~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY-----~c~ct~eel~~~~~~~Y~~~----~~~~~~G~~~~iR~k~ 163 (488)
T 3afh_A 93 EGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY-----YVVYDKEDPSKELFTTYEYP----HEYKEKGHPVTIKFKV 163 (488)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEE-----EEEECSSSTTSEEEEESSCC----HHHHHTTCCEEEEECC
T ss_pred cCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeE-----ecCCCHHHHHhhcCCCCCch----hhHHhcCCCceEEEEC
Confidence 32 3688999999999999999999999 55654421 011100 000011110 000
Q ss_pred C---------------CcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccch
Q 012397 188 D---------------SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHE 252 (464)
Q Consensus 188 ~---------------~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~ 252 (464)
+ .......|+.++|. ++.|+|+.++.. -....| ++-.+-|.| |+.
T Consensus 164 ~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------DG~PtY~lA~vV-DD~~mg--IThViRG~D----~l~ 223 (488)
T 3afh_A 164 LPGKTSFEDLLKGYMEFDNSTLEDFIIMKS-------------NGFPTYNFAVVV-DDHLMR--ISHVFRGED----HLS 223 (488)
T ss_dssp CSSEEEEEETTTEEEEEEGGGSCCEEEECT-------------TSCBCHHHHHHH-HHHHTT--CSEEEEEGG----GGG
T ss_pred CCCceeEEeccceeEeecCCCCCCeEEEec-------------CCCeehhhHHHH-HHHhcC--CCEEEEchh----hhh
Confidence 0 00011135555543 578899877642 233344 344445889 666
Q ss_pred HHHHHH---hhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHH-hcCchhHHHHHhhcCC--CCccCCCHHHH
Q 012397 253 NEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHY--RSPLNYSVLQL 325 (464)
Q Consensus 253 ~~~a~~---~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~~~--~~~~~f~~~~~ 325 (464)
+.+.+. .+++.++| .+.|..+++. +|+|||||+|+ +++.++.+ .|.|++++.|++...+ ..+-.|+.+++
T Consensus 224 ~tp~q~~l~~aLG~~~P--~f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~e~ 300 (488)
T 3afh_A 224 NTPKQLMIYEAFGWEAP--VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEK 300 (488)
T ss_dssp GHHHHHHHHHHHTCCCC--EEEEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCCHHHH
T ss_pred CHHHHHHHHHHcCCCCC--eEEEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHHH
Confidence 555444 45555543 3578777765 89999999999 68999988 4899999999987533 22245666654
Q ss_pred H
Q 012397 326 D 326 (464)
Q Consensus 326 ~ 326 (464)
.
T Consensus 301 i 301 (488)
T 3afh_A 301 L 301 (488)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-16 Score=162.67 Aligned_cols=248 Identities=16% Similarity=0.108 Sum_probs=150.7
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|||+|||||||++++...+|| +..|.=++.+--| +. .....++.+.|.++|++||+.++
T Consensus 30 APsPtG~LHiG~artAl~n~~~Ar--~~~G~fiLRieDt---D~-------------~R~~~~~~~~I~~~L~wlGl~wD 91 (512)
T 4gri_A 30 APSPTGLQHIGGIRTALFNYFFAK--SCGGKFLLRIEDT---DQ-------------SRYSPEAENDLYSSLKWLGISFD 91 (512)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHH--HTTCEEEECBCCC---CT-------------TSCCHHHHHHHHHHHHHHTCCCS
T ss_pred CcCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcC---CC-------------CcCCHHHHHHHHHHHHHcCCCCC
Confidence 488999999999999999999999 5677555544444 42 11124578899999999999974
Q ss_pred CC--------CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------------CCCCCCCCCcccccc
Q 012397 126 TY--------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------------SPNYGRLSGQRLENN 179 (464)
Q Consensus 126 ~~--------~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------------~~~~g~l~~~~~~~~ 179 (464)
+. ..++|++.+.+++...+|+++|++| .|||... +..|..++..+....
T Consensus 92 e~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY-----~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~ 166 (512)
T 4gri_A 92 EGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAY-----YCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENA 166 (512)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEE-----EECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHH
T ss_pred cCCccCCCCCCccccchHHHHHHHHHHHHHcCCcc-----ccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhh
Confidence 32 2378899999999999999999999 5666431 112322322111110
Q ss_pred -ccCCCcccCCcccCc-ccccccccccCCCCc---------ccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCcc
Q 012397 180 -RAGERVAVDSRKRNP-ADFALWKAAKAGEPS---------WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF 248 (464)
Q Consensus 180 -~~g~~~~~~~~k~~~-~d~~~w~~~~~g~~~---------~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~ 248 (464)
..|....+. .+... .+. .|...-.|... .......+.|+|+.++... ....| ++-.+-|.|
T Consensus 167 ~~~~~~~~~R-~k~~~~~~~-~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVD-D~~mg--ITHViRG~D--- 238 (512)
T 4gri_A 167 LIKKIKPVVR-FKIPLEGDT-SFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVD-DYLMK--ITHVLRAQE--- 238 (512)
T ss_dssp HHTTCCCEEE-ECCCSSCEE-EEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHH-HHHTT--CSEEEEEGG---
T ss_pred hhhhccceee-ecccccCCc-eeeccccceEEecccccCCceEEEecCCcccccccceec-ccccC--Cceeccccc---
Confidence 011100000 00000 000 01100000000 0011235678888775321 22343 556666789
Q ss_pred ccchHHH---HHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHh-cCchhHHHHHhhcC--CCC-ccCC
Q 012397 249 PHHENEI---AQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAH--YRS-PLNY 320 (464)
Q Consensus 249 ~h~~~~~---a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~--~~~-~~~f 320 (464)
|..+.+ .+..+++.++|. +.|...++. +|+|+|||.|. .++.+..+. |-|+|+.-|++.-. ++. .--|
T Consensus 239 -~l~sTp~q~~l~~alg~~~P~--y~H~pli~~~~g~kLSKR~~~-~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eif 314 (512)
T 4gri_A 239 -WVSSGPLHVLLYKAFKWKPPI--YCHLPMVMGNDGQKLSKRHGS-TALRQFIEDGYLPEAIINYVTLLGWSYDDKREFF 314 (512)
T ss_dssp -GGGGHHHHHHHHHHHTCCCCE--EEEECCCBCTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCC
T ss_pred -cccccHHHHHHHHHcCCCCCe--EEecchhccccccccCccccc-ccHHHHHHcCCChHHHHHHHHHhCCCCcccchhh
Confidence 554443 334555655443 578888776 89999999988 688888875 99999999987753 333 3568
Q ss_pred CHHHHHHH
Q 012397 321 SVLQLDSA 328 (464)
Q Consensus 321 ~~~~~~~~ 328 (464)
+.+++.+.
T Consensus 315 s~~eli~~ 322 (512)
T 4gri_A 315 SKNDLEQF 322 (512)
T ss_dssp CHHHHHHH
T ss_pred hHHHHHHH
Confidence 88887754
|
| >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=162.83 Aligned_cols=232 Identities=17% Similarity=0.121 Sum_probs=143.2
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|+|||||+|+++....+|| ...|.=++.|--|| . ......+.+.|.++|++||+.++
T Consensus 12 APsPTG~LHiG~~rtAL~n~l~Ar--~~gG~fiLRieDtD---~-------------~R~~~~~~~~I~~~L~wlGl~wD 73 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYAR--HTGGTFVFRIEDTD---A-------------QRDSEESYLALLDALRWLGLDWD 73 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHH--HHTCEEEECBCCCC---T-------------TTCCHHHHHHHHHHHHHHTCCCS
T ss_pred CcCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECcCC---C-------------cccChHHHHHHHHHHHHcCCCcC
Confidence 388999999999999999999999 56775555454444 2 22234578899999999999975
Q ss_pred C--------CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------CC----CCCCCCCccccc-c
Q 012397 126 T--------YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SP----NYGRLSGQRLEN-N 179 (464)
Q Consensus 126 ~--------~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~~----~~g~l~~~~~~~-~ 179 (464)
. ...++|++.+.+++...+|+++|++| .|||..+ .+ .|..++..+... .
T Consensus 74 egp~~gG~~~~~~QS~r~~~y~~~~~~L~~~g~aY-----~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~ 148 (498)
T 2ja2_A 74 EGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAY-----HAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYL 148 (498)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEE-----EECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHH
T ss_pred CCcCcCCCCCCeeeecCHHHHHHHHHHHHHcCCeE-----EeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhh
Confidence 4 36788999999999999999999999 5555431 01 122222211111 1
Q ss_pred ccCCCcccCCcccCcccccccccccCC-------C-CcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccc
Q 012397 180 RAGERVAVDSRKRNPADFALWKAAKAG-------E-PSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHH 251 (464)
Q Consensus 180 ~~g~~~~~~~~k~~~~d~~~w~~~~~g-------~-~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~ 251 (464)
.+|....+. .|. |..-..|...--| . ..+.....++.|+|+.++... ....| ++-.+-|.| |.
T Consensus 149 ~~g~~~~iR-~k~-~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVD-D~~mg--ithviRG~D----~~ 219 (498)
T 2ja2_A 149 AEGRQPVVR-LRM-PDDDLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCD-DALMK--ITHVLRGED----LL 219 (498)
T ss_dssp HTTCCCEEE-ECC-CSSCEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHH-HHHTT--CCEEEEEGG----GG
T ss_pred ccCCCceEE-EEC-CCCceEEEecccceEeecccccCcceeEccCCCcchhhHHHHH-hhhcC--CCEEEEChh----hh
Confidence 122210000 000 0000011100000 0 011222346788888765321 22344 455567889 55
Q ss_pred hHHH---HHHhhc-----cCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHh-cCchhHHHHHhhc
Q 012397 252 ENEI---AQSCAA-----CQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER-YHPLALRHFLISA 312 (464)
Q Consensus 252 ~~~~---a~~~a~-----~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~ 312 (464)
.+.+ .+..++ +.++| .+.|..+++. +|+|||||+|+ +++.++.+. |.|+++|.|++..
T Consensus 220 ~~t~~q~~l~~aL~~~g~g~~~P--~~~h~plil~~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~l 287 (498)
T 2ja2_A 220 PSTPRQLALHQALIRIGVAERIP--KFAHLPTVLGEGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLALL 287 (498)
T ss_dssp GGHHHHHHHHHHHHHTTSCCCCC--EEEEECCEECSSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHTS
T ss_pred hccHHHHHHHHHHHhhcCCCCCC--eEEEeeeeECCCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHHHh
Confidence 4433 344555 54443 3467777664 89999999999 689999884 9999999999875
|
| >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.6e-08 Score=97.69 Aligned_cols=69 Identities=26% Similarity=0.286 Sum_probs=48.0
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
.+++++.|.|+.. |.....-.....+..+|. .+|+.++. ++|+|||||.||.|++.| .++++|..+.+.
T Consensus 170 ~~~~v~~G~DQ~~-~~~l~rdla~~~~~~~p~--~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 170 GVDLAVGGIDQRK-IHMLARENLPRLGYSSPV--CLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp TCSEEEEEGGGHH-HHHHHHHHGGGGTCCCCE--EEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred CCCEEEechhhHH-HHHHHHHHHHhcCCCCce--EEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 6889999999654 332222222223333332 35667765 499999999999999988 699999999875
|
| >2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.9e-06 Score=81.13 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=45.9
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
.+.+|.-|+|.|||||...++. -.+.+...|+++.+.- .|.|+. ... ..+|.. ..++......++.++|
T Consensus 14 ~v~~G~~PTG~lHLGn~~g~l~---~~~~lQ~~G~~~~~~I-aD~ha~--t~~----~~dp~~-~~~~~~~~~~~~lA~G 82 (340)
T 2g36_A 14 RILSGMRPTGKLHIGHLVGALE---NWVKLQEEGNECFYFV-ADWHAL--TTH----YDDVSK-LKEYTRDLVRGFLACG 82 (340)
T ss_dssp EEEEEECCCSSCBHHHHHTHHH---HHHHHHHTTCEEEEEE-CHHHHH--HHH----TTCCTT-HHHHHHHHHHHHHHTT
T ss_pred eEEEeeCCCCcccHHhHHHHHH---HHHHHHHCCCCEEEEE-ecceee--cCC----CCCHHH-HHHHHHHHHHHHHHhC
Confidence 5667788999999999876643 3334556899988764 333321 111 235544 3445556667788899
Q ss_pred CCC
Q 012397 122 CLP 124 (464)
Q Consensus 122 i~~ 124 (464)
+.+
T Consensus 83 ldp 85 (340)
T 2g36_A 83 IDP 85 (340)
T ss_dssp CCT
T ss_pred CCh
Confidence 874
|
| >2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.2e-05 Score=80.66 Aligned_cols=85 Identities=14% Similarity=0.063 Sum_probs=47.9
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecC-----CccccHHHHHHHHHcCCChHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRN-----FTDVDDKIIRRANDLGENPLSLSNRYCQE 112 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~-----~dd~g~~i~~~a~~~g~~~~~~~~~~~~~ 112 (464)
++...+.+|--|+|.|||||+.+++. +.++++ .|+++.+.-+ +++-..+. ...+..++.+...
T Consensus 37 ~~p~~vy~G~~PTG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~--------e~~~~~~~~~~~~ 104 (394)
T 2dlc_X 37 KRHLKLYWGTAPTGRPHCGYFVPMTK---LADFLK-AGCEVTVLLADLHAFLDNMKAPL--------EVVNYRAKYYELT 104 (394)
T ss_dssp CSCCEEEEEECCCSCCBGGGHHHHHH---HHHHHH-TTCEEEEEECHHHHHHTTTSSCT--------THHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCccHHHHHHHHH---HHHHHH-cCCcEEEEEcCCccccCCCCCcH--------HHHHHHHHHHHHH
Confidence 34445556677789999999877764 444454 7888764432 22211000 0012233445567
Q ss_pred HHHHHHhcCCCCCC-CCCCcchh
Q 012397 113 YLVDMADLQCLPPT-YQPRVSDH 134 (464)
Q Consensus 113 ~~~~l~~lgi~~~~-~~~r~s~~ 134 (464)
+...|.++|+.+.. .+...|+.
T Consensus 105 i~~~l~a~Gldp~k~~i~~qS~~ 127 (394)
T 2dlc_X 105 IKAILRSINVPIEKLKFVVGSSY 127 (394)
T ss_dssp HHHHHHHTTCCCTTCEEEETHHH
T ss_pred HHHHHHHcCCChhHcEEEeCchh
Confidence 77788999997532 23444443
|
| >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-05 Score=78.58 Aligned_cols=82 Identities=9% Similarity=-0.072 Sum_probs=48.7
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++...+.+|--|+|.|||||+.... ..+.+...|+++.+.-+ |.++. .. . ..++ +-.+++...+..++
T Consensus 26 ~~~~~vy~G~~PTg~lHlGhl~~l~----~~~~lQ~~g~~~~~~i~-D~~a~--~~---~-~~~~-e~i~~~~~~~~~~~ 93 (314)
T 2zp1_A 26 KDEKSAYIGFEPSGKIHLGHYLQIK----KMIDLQNAGFDIIILLA-DLAAY--LN---Q-KGEL-DEIRKIGDYNKKVF 93 (314)
T ss_dssp SSSEEEEEEECCCSSCBHHHHHHHH----HHHHHHHTTEEEEEEEC-HHHHH--HT---T-CCCH-HHHHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCCCcchhhHHHHH----HHHHHHHCCCCEEEEEe-cceEe--cC---C-CCCH-HHHHHHHHHHHHHH
Confidence 3445666778888999999944432 34455567988865543 22221 00 0 1133 33445667888899
Q ss_pred HhcCCCCCCCCCCcch
Q 012397 118 ADLQCLPPTYQPRVSD 133 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s~ 133 (464)
.++|+. ..+...|+
T Consensus 94 ~a~G~d--~~~~~qs~ 107 (314)
T 2zp1_A 94 EAMGLK--AKYVYGSE 107 (314)
T ss_dssp HHTTCC--CEEEEGGG
T ss_pred HhcCCC--eEEEECCh
Confidence 999986 44554453
|
| >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2.3e-05 Score=78.05 Aligned_cols=68 Identities=22% Similarity=0.083 Sum_probs=35.1
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeee-eCCcccccccCC-ccCHHHHHHhcCchhHHHHHhh
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN-FFTIRQITERYHPLALRHFLIS 311 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn-~i~~~dll~~~~~dalR~~ll~ 311 (464)
..+++++|.|+.. |.....-.....+..+|. .+++.++. ++|+|||||.|| .|++.| +++.++=.+.+
T Consensus 178 ~a~~v~~G~DQ~~-~~~l~rdl~~r~~~~~p~--~l~~pll~gldG~KMSKS~~ns~I~L~d-----~p~~i~kKi~~ 247 (372)
T 1n3l_A 178 KVDAQFGGIDQRK-IFTFAEKYLPALGYSKRV--HLMNPMVPGLTGSKMSSSEEESKIDLLD-----RKEDVKKKLKK 247 (372)
T ss_dssp TCSEEEEEGGGHH-HHHHHHHHGGGGTCCCCE--EEEECCCCCSSCC-------CCSCBTTC-----CHHHHHHHHHT
T ss_pred cCCEEEcChhHHH-HHHHHHHHHHHcCCCCCE--EEecCccCCCCcccccCCCCCCeEeccC-----CHHHHHHHHHH
Confidence 5789999999542 222222222223333333 34555654 499999999999 798876 46666666655
|
| >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.2e-05 Score=77.92 Aligned_cols=75 Identities=12% Similarity=-0.036 Sum_probs=44.5
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (464)
...+.+|--|+|.|||||+.... ..+.+...|+++.+.-+ |.|+. + -...|.+++++. ++...+..++..
T Consensus 35 ~~~iy~G~~PTg~lHlG~l~~l~----~~~~lQ~~G~~~~~~ia-D~~a~-~---~~ps~~~~e~i~-~~~~~~~~~~la 104 (364)
T 2cya_A 35 RIKGYIGYEPSGVAHIGWLVWMY----KVKDLVEAGVDFSVLEA-TWHAY-I---NDKLGGDMDLIR-AAARIVRRVMEA 104 (364)
T ss_dssp CCEEEEEECCCSSCBTHHHHHHH----HHHHHHHTTCEEEEEEC-HHHHH-H---TTGGGGCHHHHH-HHHHHHHHHHHH
T ss_pred CCEEEeccCCCCCccHhHHHHHH----HHHHHHHCCCCEEEEEe-Ccchh-h---CCCCCCCHHHHH-HHHHHHHHHHHH
Confidence 34556678888999999944432 33445557999876544 32321 0 001123444433 455677888999
Q ss_pred cCCCC
Q 012397 120 LQCLP 124 (464)
Q Consensus 120 lgi~~ 124 (464)
+|+.+
T Consensus 105 ~G~dp 109 (364)
T 2cya_A 105 AGVPV 109 (364)
T ss_dssp TTCCG
T ss_pred hCCCc
Confidence 99974
|
| >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.79 E-value=5.3e-05 Score=74.29 Aligned_cols=80 Identities=20% Similarity=0.038 Sum_probs=43.2
Q ss_pred CeeEEEecccCccccchHHHHHHhh----cc--CCCCccEEEEe---eeee-eCC-cccccccCCccCHHHHHHhcCchh
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCA----AC--QDSNVSYWMHN---GHVT-NNN-EKMSKSLGNFFTIRQITERYHPLA 304 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a----~~--~~~~~~~~~~~---~~v~-~~G-~KmSks~gn~i~~~dll~~~~~da 304 (464)
..+++++|.|+.. |.....-.... ++ ...| .. ++. ..+. ++| +|||||.||.|++.| .++.
T Consensus 141 ~~~lvp~G~DQ~~-~i~l~rdla~r~n~~~g~~f~~P-~~-~~~~~~p~l~gldG~~KMSKS~~n~I~L~d-----~p~~ 212 (337)
T 2el7_A 141 KADTVPVGEDQVQ-HIELTREIARRFNHLFGETFPEP-QA-LLNPEAPRVPGIDGKAKMSKSLGNTIGLLE-----PEES 212 (337)
T ss_dssp TCCEEECCGGGCH-HHHHHHHHHHHHHHHHSSCCCCC-EE-ECCTTSCCCBCTTSSSBCCTTTTCCCBSSS-----CHHH
T ss_pred CCcEEEcccchHH-HHHHHHHHHHHHHhhcCcccCCC-ee-ecccccccccCCCCccccCCCCCCeeeCcC-----CHHH
Confidence 5899999999653 33222211111 12 1222 22 333 2443 389 899999999999887 4777
Q ss_pred HHHHHhhc--CCCCccCCCHH
Q 012397 305 LRHFLISA--HYRSPLNYSVL 323 (464)
Q Consensus 305 lR~~ll~~--~~~~~~~f~~~ 323 (464)
++=.+.+. +....+.++..
T Consensus 213 i~~Ki~~a~td~~~~~~~~~~ 233 (337)
T 2el7_A 213 IWQKIQHLPDDPQRIRLSDPG 233 (337)
T ss_dssp HHHHHHTCCCCC---------
T ss_pred HHHHHHhCCCCCccccccCCC
Confidence 77777664 33334444443
|
| >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00027 Score=70.31 Aligned_cols=76 Identities=7% Similarity=-0.065 Sum_probs=47.1
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++...+.+|--|+|+|||||.-.+ ..+.++++..|..+.++ +.|.. +......+++++.+ +...+..++
T Consensus 80 ~~~~~vysG~~PTG~lHLGh~v~~---~~~~~lQ~~~g~~v~i~--I~D~~-----a~~~r~~~~e~i~~-~~~~~~~~~ 148 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEEYITL---EFARYLQDAFNIQVIIQ--ILDDI-----KVLNREATINEASK-MSNDLMKYI 148 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGGHHHH---HHHHHHHHHHCCEEEEE--ECHHH-----HHHTTSCCHHHHHH-HHHHHHHHH
T ss_pred CCCeEEEeccCCCCCccHHHHHHH---HHHHHHHHhcCCeEEEE--eCchH-----HhhcCCCCHHHHHH-HHHHHHHHH
Confidence 555667788999999999995443 33444444458888877 33322 11122256655444 445677788
Q ss_pred HhcCCCC
Q 012397 118 ADLQCLP 124 (464)
Q Consensus 118 ~~lgi~~ 124 (464)
-.+|+.+
T Consensus 149 lA~GlDp 155 (386)
T 3hzr_A 149 LAFGFNE 155 (386)
T ss_dssp HHTCCCG
T ss_pred HHcCCCC
Confidence 8889874
|
| >3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=1.2e-05 Score=78.31 Aligned_cols=69 Identities=12% Similarity=0.052 Sum_probs=41.0
Q ss_pred EEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCC
Q 012397 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQC 122 (464)
Q Consensus 43 ~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 122 (464)
+.||--|+|.|||||.-.++.. +.++++ |+++.+.-+ |.|+.- -..++++ ..++...+..++...|+
T Consensus 6 vysG~~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~~-------~~~~~~~-l~~~~~~~~~~~lA~Gl 72 (322)
T 3tzl_A 6 VLTGLQPSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAMT-------SSQDGEK-LKQNSLKAAAAFLSLGI 72 (322)
T ss_dssp BEEEECCSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHTT-------TCCCHHH-HHHHHHHHHHHHHHTTC
T ss_pred EEEccCCCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeeec-------CCCCHHH-HHHHHHHHHHHHHHcCC
Confidence 4567888899999997654432 344443 999876543 433310 0113333 34455567777778898
Q ss_pred CC
Q 012397 123 LP 124 (464)
Q Consensus 123 ~~ 124 (464)
.+
T Consensus 73 dp 74 (322)
T 3tzl_A 73 DP 74 (322)
T ss_dssp CT
T ss_pred Cc
Confidence 74
|
| >3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00017 Score=71.57 Aligned_cols=76 Identities=7% Similarity=0.051 Sum_probs=42.9
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (464)
...+.+|--|+|.||||| .++..-.+.+ +...|+++.+.-+ |.|+. + . ...|.+++++ +.....+...+..
T Consensus 56 ~~~iy~G~~PTg~lHlG~--gvl~~~~~~~-lQ~~G~~~~~lIa-D~ha~-i-~--d~~~~~~~~i-~~~~~~~~~~~~a 126 (373)
T 3vgj_A 56 KLICYDGFEPSGRMHIAQ--GLLKSIIVNK-LTSNGCTFIFWIA-DWFAH-L-N--NKMSGDLKKI-KKVGSYFIEVWKS 126 (373)
T ss_dssp SCEEEEEECCCSSCBHHH--HHHHHHHHHH-HHTTTCEEEEEEC-HHHHH-H-T--TGGGGCHHHH-HHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCCceehh--hHHHHHHHHH-HHHCCCcEEEEEe-cceeE-e-c--CCCCCCHHHH-HHHHHHHHHHHHH
Confidence 345667788889999999 2222222344 4457999887654 32321 0 0 0112333332 3444556678888
Q ss_pred cCCCC
Q 012397 120 LQCLP 124 (464)
Q Consensus 120 lgi~~ 124 (464)
+|+.+
T Consensus 127 ~G~dp 131 (373)
T 3vgj_A 127 CGMNM 131 (373)
T ss_dssp TTCCS
T ss_pred cCCCh
Confidence 99874
|
| >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00026 Score=70.49 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=47.4
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHH-CCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~-~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
++...+.+|--|+|.|||||.-.++ +.|++.. .|+++.+.-+ |.|.. .. ..+.++++ ..++...+..+
T Consensus 71 ~~p~~i~sG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~i~Ia-D~ha~--~~---~~~~~~e~-i~~~~~~~~~~ 139 (392)
T 3jxe_A 71 GRGFFLYTGRGPSGPMHIGHIIPFF----ATKWLQEKFGVNLYIQIT-DDEKF--LF---KENLTFDD-TKRWAYDNILD 139 (392)
T ss_dssp TCCCEEEEEECCSSCCBHHHHHHHH----HHHHHHHHHCCEEEEEEC-HHHHH--HH---CSSCCHHH-HHHHHHHHHHH
T ss_pred CCCeEEEeccCCCCchhHHHHHHHH----HHHHHHHhcCCceEEEec-chHHh--hc---CCCCCHHH-HHHHHHHHHHH
Confidence 4455666777788999999966553 2344554 7998887655 44321 10 11245544 34455677778
Q ss_pred HHhcCCCC
Q 012397 117 MADLQCLP 124 (464)
Q Consensus 117 l~~lgi~~ 124 (464)
+..+|+.+
T Consensus 140 ~lA~GlDp 147 (392)
T 3jxe_A 140 IIAVGFDP 147 (392)
T ss_dssp HHTTCCCT
T ss_pred HHHhCcCc
Confidence 88889874
|
| >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00054 Score=68.28 Aligned_cols=76 Identities=13% Similarity=0.052 Sum_probs=45.7
Q ss_pred CcceEEEeCCCCC-CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc-CCChHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL-GENPLSLSNRYCQEYLV 115 (464)
Q Consensus 38 ~~~~v~~~~P~p~-G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~-g~~~~~~~~~~~~~~~~ 115 (464)
++...+.||--|+ |.|||||.-.+ ..+.++++..|..|.+. -.| .+ +.... ..+++++ .++...+..
T Consensus 72 g~~~~vy~G~~PTa~~lHlGh~v~~---~~~~~lQ~~~~~~v~i~-I~D-~~-----~~~~r~~~~~e~i-~~~~~~~~~ 140 (393)
T 3hv0_A 72 GELFYLYTGRGPSSESLHVGHLVPF---LFTKYLQDTFKVPLVIQ-LTD-DE-----KFIFKSNLTLEET-HNYAYENMK 140 (393)
T ss_dssp TCCCEEEEEECCSSSSCBSTTHHHH---HHHHHHHHHHCCCEEEE-ECH-HH-----HHHHCTTCCHHHH-HHHHHHHHH
T ss_pred CCCeEEEeCCCCCCCCccHHHHHHH---HHHHHHHHhcCCCeEee-ccC-hH-----HHhhccCCCHHHH-HHHHHHHHH
Confidence 5445666888899 78999995444 34555555557776652 223 22 22222 4555544 445556777
Q ss_pred HHHhcCCCC
Q 012397 116 DMADLQCLP 124 (464)
Q Consensus 116 ~l~~lgi~~ 124 (464)
++..+|+.+
T Consensus 141 ~~lA~GlDp 149 (393)
T 3hv0_A 141 DIIACGFDP 149 (393)
T ss_dssp HHHTTCCCT
T ss_pred HHHHcCCCC
Confidence 888889874
|
| >3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00037 Score=69.52 Aligned_cols=77 Identities=12% Similarity=0.046 Sum_probs=47.3
Q ss_pred CCcceEEEeCCCCCC-cCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 012397 37 RGKVGMYVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G-~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 115 (464)
.++...+.+|--|+| .|||||.-.+ ..+.++++..|..+..+- .|++ ++.....+++++. ++...+.+
T Consensus 75 ~~~~~~vy~G~~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~I-~D~~------~~l~~~~~~e~i~-~~~~~~~~ 143 (395)
T 3i05_A 75 SGQPFYLYTGRGPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQM-TDDE------KFYFRNIPMEQVE-AMTTENIK 143 (395)
T ss_dssp TTCCEEEEEEECCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEEE-CHHH------HHHHSCCCHHHHH-HHHHHHHH
T ss_pred cCCCeEEEEeecCCCccchHHHHHHH---HHHHHHHHhcCCcEEEEE-cchH------HHhcCCCCHHHHH-HHHHHHHH
Confidence 355567778889998 7999996443 345555554577777652 2222 1222235555544 45567777
Q ss_pred HHHhcCCCC
Q 012397 116 DMADLQCLP 124 (464)
Q Consensus 116 ~l~~lgi~~ 124 (464)
++..+|+.+
T Consensus 144 ~~lA~GlDp 152 (395)
T 3i05_A 144 DIIAMGFDP 152 (395)
T ss_dssp HHHTTTCCT
T ss_pred HHHHcCCCC
Confidence 888888864
|
| >3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0014 Score=64.95 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=42.7
Q ss_pred EEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCC
Q 012397 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQC 122 (464)
Q Consensus 43 ~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 122 (464)
+.+|--|+|.|||||.-.++.- + +.|. .|+++.+.- .|.|..- ...+++.+. ++..+...++...|+
T Consensus 38 i~sG~~PTG~lHLGhyvGal~~--~-~~LQ-~~~~~~~~I-aD~hAlt-------~~~~~~~lr-~~~~~~aa~~lA~Gl 104 (388)
T 3prh_A 38 IFSGIQPSGSVTLGNYIGAMKQ--F-VELQ-HDYNSYFCI-VDQHAIT-------VPQDRLELR-KNIRNLAALYLAVGL 104 (388)
T ss_dssp EEEEECCCSCCBHHHHHHTHHH--H-HHTT-TTSEEEEEE-CHHHHTT-------SCCCHHHHH-HHHHHHHHHHHHTTC
T ss_pred EEEeeCCCCcchHHHHHHHHHH--H-HHHH-ccCcEEEEE-ecceeee-------cCCCHHHHH-HHHHHHHHHHHHhCC
Confidence 6788999999999996555421 1 1222 489986543 3544321 023555443 344567778888999
Q ss_pred CC
Q 012397 123 LP 124 (464)
Q Consensus 123 ~~ 124 (464)
.+
T Consensus 105 Dp 106 (388)
T 3prh_A 105 DP 106 (388)
T ss_dssp CT
T ss_pred Ch
Confidence 74
|
| >2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00045 Score=68.67 Aligned_cols=75 Identities=12% Similarity=0.012 Sum_probs=41.4
Q ss_pred eEEEeCCCCCCcCCccc-chhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHH----HHHHHHHHH
Q 012397 41 GMYVCGVTAYDLSHLGH-ARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLS----NRYCQEYLV 115 (464)
Q Consensus 41 ~v~~~~P~p~G~lHiGH-ar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~----~~~~~~~~~ 115 (464)
..+.+|--|+|.||||| +.... -.+.+...|+++.+.-+ |.|+. + -...|.+++++. ..+...+..
T Consensus 34 ~~vy~G~~PTg~lHlG~yl~~l~----~~~~lQ~~G~~~~~~ia-D~ha~-~---~~~~g~~~e~i~~~~~~~~~~~~~~ 104 (375)
T 2cyc_A 34 LQHYIGFEISGYIHLGTGLMAGA----KIADFQKAGIKTRVFLA-DWHSW-I---NDKLGGDLEVIQEVALKYFKVGMEK 104 (375)
T ss_dssp CBEEEEECCCSCCBHHHHHHHHH----HHHHHHHTTCBCEEEEC-HHHHH-H---TTGGGGCHHHHHHHHHHTHHHHHHH
T ss_pred cEEEeCCCCCCCcCchHHHHHHH----HHHHHHHCCCcEEEEec-CcEEE-c---CCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45566788889999999 66543 33344457998876543 11110 0 001123333332 223333447
Q ss_pred HHHhcCCCC
Q 012397 116 DMADLQCLP 124 (464)
Q Consensus 116 ~l~~lgi~~ 124 (464)
.+..+|+.+
T Consensus 105 ~~la~G~dp 113 (375)
T 2cyc_A 105 SIEVMGGDP 113 (375)
T ss_dssp HHHHTTCCG
T ss_pred HHHHhCCCc
Confidence 888999874
|
| >1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A | Back alignment and structure |
|---|
Probab=97.25 E-value=9.8e-05 Score=72.11 Aligned_cols=70 Identities=9% Similarity=0.075 Sum_probs=42.4
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
.+.||--|+|.|||||...++.-- .+ +. .|+++.+.- .|.|+.-. ..++++ ..++...+.+++..+|
T Consensus 3 ~vysG~~PTG~lHlGn~vg~l~~~--~~-lQ-~g~~~~~~I-aD~ha~~~-------~~~~e~-i~~~~~~~~~~~la~G 69 (328)
T 1i6k_A 3 TIFSGIQPSGVITIGNYIGALRQF--VE-LQ-HEYNCYFCI-VDQHAITV-------WQDPHE-LRQNIRRLAALYLAVG 69 (328)
T ss_dssp EEEEEECCCSCCBHHHHHHTHHHH--HH-HT-TTSEEEEEE-CHHHHTTS-------CCCHHH-HHHHHHHHHHHHHHTT
T ss_pred EEEEeeCCCCcccHHHHHHHHHHH--HH-HH-cCCcEEEEE-eCceeecC-------CCCHHH-HHHHHHHHHHHHHHhC
Confidence 456778888999999987765221 12 22 399986443 23232100 134443 3345567888888999
Q ss_pred CCC
Q 012397 122 CLP 124 (464)
Q Consensus 122 i~~ 124 (464)
+.+
T Consensus 70 ldp 72 (328)
T 1i6k_A 70 IDP 72 (328)
T ss_dssp CCT
T ss_pred CCh
Confidence 974
|
| >3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0011 Score=66.36 Aligned_cols=76 Identities=16% Similarity=0.101 Sum_probs=45.7
Q ss_pred CcceEEEeCCCCCC-cCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 38 ~~~~v~~~~P~p~G-~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
++...+.+|--|+| .|||||.-.+ ..+.++++..|..+... -.|.+. ... ...+++++ .++...+..+
T Consensus 99 ~~p~~vy~G~~PTg~~lHLGh~v~~---~~~~~lQ~~~g~~~~i~-IaD~~a--~l~----~~~~~e~i-~~~~~~~~~~ 167 (406)
T 3tze_A 99 NRPFYLYTGRGPSSKTMHIGHTIPF---LLCKYMQDAFKIRLVIQ-ITDDEK--FLW----KSMRLEDA-MAYGRENIKD 167 (406)
T ss_dssp TCCEEEEEEECCCSSCCBGGGHHHH---HHHHHHHHHHTCCEEEE-ECHHHH--HHH----SSCCHHHH-HHHHHHHHHH
T ss_pred CCCeEEEEeeCCCCCcccHHHHHHH---HHHHHHHHhcCCcEEEE-eeChHH--HcC----CCCCHHHH-HHHHHHHHHH
Confidence 55566778899998 8999995443 33444444448777663 223321 111 12455544 4455677777
Q ss_pred HHhcCCCC
Q 012397 117 MADLQCLP 124 (464)
Q Consensus 117 l~~lgi~~ 124 (464)
+-.+|+.+
T Consensus 168 ~lA~GlDp 175 (406)
T 3tze_A 168 IVTLGFDP 175 (406)
T ss_dssp HHTTTCCG
T ss_pred HHHcCCCc
Confidence 87888874
|
| >2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00053 Score=67.48 Aligned_cols=76 Identities=3% Similarity=-0.091 Sum_probs=43.4
Q ss_pred cceEEEeCCCCCCcCCccc-chhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 39 KVGMYVCGVTAYDLSHLGH-ARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGH-ar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
+...+.||--|+|.||||| +.... ..+.+...|+++.+.-+ |.|+. .. ...|.++++ .+++...+.+.+
T Consensus 39 ~~~~vy~G~~PTg~lHlGhyl~~l~----~~~~lQ~~G~~~~~~i~-D~~a~--~~--~~~~~~~e~-i~~~~~~~~~~~ 108 (348)
T 2j5b_A 39 RIFTAYNGFEPSGRIHIAQALITVM----NTNNMIECGGQMIIYIA-DWFAK--MN--LKMNGDINK-IRELGRYFIEVF 108 (348)
T ss_dssp CCEEEEEEECCCSSCBHHHHHHHHH----HHHHHHHTTEEEEEEEC-HHHHH--HT--TGGGGCHHH-HHHHHHHHHHHH
T ss_pred CCCEEEeccCCCCCCchhHHHHHHH----HHHHHHHcCCcEEEEec-cchhh--hC--CCCCCCHHH-HHHHHHHHHHHH
Confidence 3345577778889999999 44432 33344456998876543 22221 00 011234433 344556677778
Q ss_pred HhcCCCC
Q 012397 118 ADLQCLP 124 (464)
Q Consensus 118 ~~lgi~~ 124 (464)
..+|+.+
T Consensus 109 la~Gldp 115 (348)
T 2j5b_A 109 KACGINL 115 (348)
T ss_dssp HHTTCCG
T ss_pred HHhcCCc
Confidence 8889874
|
| >3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0016 Score=69.62 Aligned_cols=78 Identities=6% Similarity=-0.092 Sum_probs=43.8
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++...+.+|--|+|.||||| .++..-.+.+ +...|+++.+.-+ |-|+.-. ...|.++++ .+.+...+.+.+
T Consensus 38 ~~~~~vy~G~~PTg~lHLG~--~v~~~~~~~~-lQ~~G~~~~~lIa-D~ha~~~----d~~~~~~e~-i~~~~~~~~~~~ 108 (690)
T 3p0j_A 38 KPLIRCYDGFEPSGRMHIAQ--GIFKAVNVNK-CTAAGCEFVFWVA-DWFALMN----DKVGGELEK-IRIVGRYLIEVW 108 (690)
T ss_dssp CTTEEEEEEECCCSCCBHHH--HHHHHHHHHH-HHHTTEEEEEEEC-CGGGGGG----CTTTTHHHH-HHHHHHHHHHHH
T ss_pred CCCceEEeeecCCCcchhHh--hHHHHHHHHH-HHHCCCcEEEEEe-eeEEEec----CCCcchHHH-HHHHHHHHHHHH
Confidence 34456677888999999999 2221212334 4457999876654 3333100 001223333 233445667778
Q ss_pred HhcCCCC
Q 012397 118 ADLQCLP 124 (464)
Q Consensus 118 ~~lgi~~ 124 (464)
..+|+.+
T Consensus 109 lA~GlDp 115 (690)
T 3p0j_A 109 KAAGMDM 115 (690)
T ss_dssp HHTTCCG
T ss_pred HHcCCCh
Confidence 8899874
|
| >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0011 Score=66.96 Aligned_cols=77 Identities=18% Similarity=0.123 Sum_probs=46.3
Q ss_pred CcceEEEeCCCCC-CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 38 ~~~~v~~~~P~p~-G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
++...+.||--|+ |.|||||.-+++ .+.++++..|+.+.+.-+ |.++- +. ....+++. ..++...+..+
T Consensus 100 g~~~~vy~G~dPTag~LHLGh~v~~~---~l~~lQ~~~g~~~i~lI~-D~ta~--l~---~~~~t~e~-i~~~~~~~~~~ 169 (432)
T 2ip1_A 100 GKPFFLYTGRGPSSDSMHLGHMIPFV---FTKWLQEVFDVPLVIELT-DDEKF--LF---KHKLTIND-VKNFARENAKD 169 (432)
T ss_dssp TCCCEEEEEECCCSSCCBGGGHHHHH---HHHHHHHHHTCCEEEEEC-HHHHH--HH---CTTCCHHH-HHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCCccHHHHHHHH---HHHHHHHHcCCeEEEEEe-cccce--eC---CCCCCHHH-HHHHHHHHHHH
Confidence 4455677888899 999999976554 233444448998776665 32221 10 11245443 45555566777
Q ss_pred HHhcCCCC
Q 012397 117 MADLQCLP 124 (464)
Q Consensus 117 l~~lgi~~ 124 (464)
+-.+|+.+
T Consensus 170 ~lA~GlDp 177 (432)
T 2ip1_A 170 IIAVGFDP 177 (432)
T ss_dssp HHTTTCCG
T ss_pred HHHhCCCC
Confidence 87888863
|
| >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0016 Score=66.57 Aligned_cols=75 Identities=11% Similarity=0.030 Sum_probs=45.4
Q ss_pred CcceEEEeCCCCC-CcCCcccchhHHHHHHHHHHHHH-CCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (464)
Q Consensus 38 ~~~~v~~~~P~p~-G~lHiGHar~~l~~D~laR~lr~-~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 115 (464)
++...+.||--|+ |.|||||.-+++ +.|++.. .|+.+.+.-+=+ ++ .+.. ..++++ +.++...+..
T Consensus 153 ~~~~~vy~G~dPTag~LHLGh~v~~~----~~~~lQ~~~g~~~iilI~D~-~a--~igd----~lt~e~-i~~n~~~~~~ 220 (477)
T 1r6t_A 153 KKPFYLYTGRGPSSEAMHVGHLIPFI----FTKWLQDVFNVPLVIQMTDD-EK--YLWK----DLTLDQ-AYGDAVENAK 220 (477)
T ss_dssp TCCEEEEEEECCCTTCCBGGGHHHHH----HHHHHHHHHTCCEEEEECHH-HH--HHHS----SCCHHH-HHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHH----HHHHHHHHhCCcEEEEEecc-ee--eecC----CCCHHH-HHHHHHHHHH
Confidence 4556677888899 999999976654 2334554 899876554321 11 1111 345544 3445555666
Q ss_pred HHHhcCCCC
Q 012397 116 DMADLQCLP 124 (464)
Q Consensus 116 ~l~~lgi~~ 124 (464)
++-.+|+.+
T Consensus 221 ~~lA~GlDp 229 (477)
T 1r6t_A 221 DIIACGFDI 229 (477)
T ss_dssp HHHTTCCCT
T ss_pred HHHHhCCCC
Confidence 777788864
|
| >1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0084 Score=59.72 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=43.2
Q ss_pred CeeEEEecccCccccchHHHHHHhhcc--C---------CC----CccEEEEeeeee-eCCcccccccCCccCHHHHHHh
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAAC--Q---------DS----NVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER 299 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~--~---------~~----~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~ 299 (464)
.++++++|.|+ .+|.....-...-.+ . .| .+.+.+++.++. ++|+|||||.||.|++.| +.
T Consensus 232 ~~~i~~gG~DQ-~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d--~~ 308 (392)
T 1y42_X 232 GVQMQIGGSDQ-YGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDP--YQ 308 (392)
T ss_dssp CEEEEEECTTC-HHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSST--TT
T ss_pred CccEEecCcch-HhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccC--CC
Confidence 58999999997 334432222111110 0 01 123335555655 399999999999998877 33
Q ss_pred cCchhHHHHHhhc
Q 012397 300 YHPLALRHFLISA 312 (464)
Q Consensus 300 ~~~dalR~~ll~~ 312 (464)
-+|+.++=++.+.
T Consensus 309 tsp~~i~qki~~~ 321 (392)
T 1y42_X 309 TSVFDFYGYFVRR 321 (392)
T ss_dssp SCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcC
Confidence 4555555555543
|
| >2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0033 Score=61.08 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=46.3
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
..++.++|.|+. +|.....-.....+..++. .++...+.- +|+|||||.||.|++.| +..+++.++=.+.+.
T Consensus 191 ~~~v~~gG~DQ~-~~i~l~rdla~r~n~~~~~--~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~~ 263 (322)
T 2yxn_A 191 GVVLCIGGSDQW-GNITSGIDLTRRLHQNQVF--GLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWINT 263 (322)
T ss_dssp CEEEEEECTTCH-HHHHHHHHHHHHHHCCCCE--EEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHTC
T ss_pred CceEEecCchhH-HHHHHHHHHHHHhCCCCce--eeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhCC
Confidence 588999999964 2332222222223333322 233445543 89999999999999988 677788887666653
|
| >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.006 Score=61.55 Aligned_cols=69 Identities=23% Similarity=0.196 Sum_probs=44.2
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeee-eCCc-ccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNE-KMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~-KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
..+++++|.|+. +|.....-.....+..++ +.+++.++. ++|. |||||.||.|++.| +|+.++=++.+.
T Consensus 187 ~~~l~~gG~DQ~-~ni~l~rdlarr~~~~~~--~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 187 RADVEMGGTDQR-FNLLVGREVQRAYGQSPQ--VCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp TCSEEEEEGGGH-HHHHHHHHHHHHTTCCCC--EEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CccEEEechHHH-HHHHHHHHHHHHhCCCCc--eEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 488999999975 344333333333333332 234555654 3896 99999999999877 666666666553
|
| >1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.013 Score=58.91 Aligned_cols=57 Identities=19% Similarity=0.085 Sum_probs=36.3
Q ss_pred CeeEEEecccCccccchHHHHHHhhc-cCCCCccEEEEeeeee-eCCcccccccCCccCHHH
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAA-CQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQ 295 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~-~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~d 295 (464)
.++++++|.|+.. |.....-..... +..++. .++..++. ++|+|||||.||.|++.|
T Consensus 186 ~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~~~--~l~~pll~~ldG~KMSKS~~naI~L~d 244 (420)
T 1jil_A 186 NCKIQVGGSDQWG-NITSGIELMRRMYGQTDAY--GLTIPLVTKSDGKKFGKSESGAVWLDA 244 (420)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHHHHHHCCCCCE--EEEECCCBCTTSCBTTBCSSSBCBSST
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhcCCCCee--EeecccccCCccccccCCCCCeEecCC
Confidence 5899999999642 332222222333 333322 24445554 399999999999998877
|
| >2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0097 Score=58.54 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=34.6
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
.++++++|.|+. +|.....-.....+..++. .++..++. ++|+|||||.||.|++.| +.-+|+.++=.+.+.
T Consensus 210 ~~~i~p~G~DQ~-~~i~l~rdla~r~n~~~~~--~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~~ 282 (356)
T 2pid_A 210 GCRVQLGGSDQL-GNIMSGYEFINKLTGEDVF--GITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVRQ 282 (356)
T ss_dssp CCCEEEEEGGGH-HHHHHHHHHHHHHSSCCCE--EEEECCCC-------------CCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhCCCCcc--ccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHcC
Confidence 589999999964 2332222222223333332 24445554 499999999999999887 456777777766663
|
| >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.012 Score=59.24 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=44.6
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeee-eCCcccccccCC-ccCHHHHHHhcCchhHHHHHhhc
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN-FFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn-~i~~~dll~~~~~dalR~~ll~~ 312 (464)
.++++++|.|+.. |.....-.....+..++. .++..++. .+|+|||||.|| .|++.| +.-+|+.++=++.+.
T Consensus 187 ~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~~--~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~~ 260 (432)
T 2jan_A 187 GCTLQIGGADQWG-NIIAGVRLVRQKLGATVH--ALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVNT 260 (432)
T ss_dssp CCCEEEECSTTHH-HHHHHHHHHHHHHCCCCE--EEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhCCCCcc--ccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhcC
Confidence 5899999999642 332222222223343332 24445554 399999999999 998887 455666666565553
|
| >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0092 Score=59.90 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=40.7
Q ss_pred CeeEEEecccCccccchHHHHHHhhc-cCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHhcCchhHHHHHh
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAA-CQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~-~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll 310 (464)
.++++++|.|+.. |.....-..... +..++. .++..++. .+|+|||||.||.|++.| +.-+|+.++=++.
T Consensus 185 ~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~~~--~lt~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~qki~ 256 (419)
T 2ts1_A 185 GCRLQIGGSDQWG-NITAGLELIRKTKGEARAF--GLTIPLVTKADGTKFGKTESGTIWLDK--EKTSPYEFYQFWI 256 (419)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHHHHHHC--CCE--EEEECCCCCTTSCCTTCCSSCCCBSST--TTSCHHHHHHHHH
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhcCCCCee--ecccccccCCCcccccCCCCCeEecCC--CCCCHHHHHHHHh
Confidence 5899999999642 332222222233 333322 24445554 399999999999998877 3334444444443
|
| >1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.027 Score=55.27 Aligned_cols=72 Identities=15% Similarity=0.045 Sum_probs=41.7
Q ss_pred eEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 012397 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (464)
Q Consensus 41 ~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (464)
..+.||--|+|.|||||...++.. +.+ +... +++.+ .-.|.|+.-. . +.+++++. ++...+..++.++
T Consensus 23 ~~vysG~~PTG~lHLGn~~g~l~~--~~~-lQ~~-~~~~~-~IaD~ha~~~--~----~~~~e~i~-~~~~~~~~~~la~ 90 (351)
T 1yi8_B 23 PRVLTGDRPTGALHLGHLAGSLQN--RVR-LQDE-AELFV-LLADVQALTD--H----FDRPEQVR-ENVLAVALDYLAA 90 (351)
T ss_dssp SEEEEEECCSSCCBHHHHHHTHHH--HHH-HTSS-SEEEE-EECHHHHHHH--H----TTCHHHHH-HHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCccHHHHHHHHHH--HHH-HHHh-CCeEE-EEecchhhcC--C----CCCHHHHH-HHHHHHHHHHHHh
Confidence 345567888899999998766421 112 2223 77743 3344443211 1 34555443 4555677788889
Q ss_pred CCCC
Q 012397 121 QCLP 124 (464)
Q Consensus 121 gi~~ 124 (464)
|+.+
T Consensus 91 Gldp 94 (351)
T 1yi8_B 91 GLDP 94 (351)
T ss_dssp TCCT
T ss_pred CCCh
Confidence 9874
|
| >3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.2 Score=49.44 Aligned_cols=77 Identities=18% Similarity=0.108 Sum_probs=49.2
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
.|+...+.+|--|+|.|||||.-.+. -.+++...|+++.+. -.|.|.. .-...+..+..+.+...+..+
T Consensus 67 ~gk~~~v~sG~~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~-IaD~ha~------t~~~~~~~e~~r~~~~~~~~~ 135 (372)
T 3a04_A 67 RGERVAVLTGFMPSGKFHFGHKLTVD----QLIYLQKNGFKVFVA-IADAEAF------AVRRIGREEAVRIAVEEYIAN 135 (372)
T ss_dssp TTCCCEEEEEECCCSCCBHHHHHHHH----HHHHHHHTTCEEEEE-ECHHHHH------HTTCCCHHHHHHHHHHTTHHH
T ss_pred cCCCCEEEeCcCCCcHhHHHHHHHHH----HHHHHHhCCCeEEEE-Eecchhh------ccCCCCCHHHHHHHHHHHHHH
Confidence 46667777889999999999954432 344555679998643 3454431 111223344455566667777
Q ss_pred HHhcCCCC
Q 012397 117 MADLQCLP 124 (464)
Q Consensus 117 l~~lgi~~ 124 (464)
+-.+|+.+
T Consensus 136 ~lA~GlDP 143 (372)
T 3a04_A 136 MIALGLDP 143 (372)
T ss_dssp HHHHTCCT
T ss_pred HHHcCCCh
Confidence 88889975
|
| >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.12 Score=50.63 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=45.6
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
.+.||--|+|.|||||...++.-- .+ +.. |+++.+.- .|.|+.-. ..+++++ ..+...+..++.+.|
T Consensus 6 ~i~sG~~PTG~lHLGn~vg~l~~~--~~-lQ~-~~~~~~~I-aD~ha~~~-------~~d~~~i-~~~~~~~~~~~lA~G 72 (348)
T 2yy5_A 6 RALTGIQASGKQHLGNYLGVMQSL--IE-LQE-QCQLFVFV-ADLHSITV-------DFQPQAL-KQNNFDLVRTLLAVG 72 (348)
T ss_dssp EEEEEECCCTTCBHHHHHHTGGGH--HH-HHH-HSEEEEEE-CHHHHTTS-------CCCHHHH-HHHHHHHHHHHHHTT
T ss_pred EEEEeeCCCCcccHHHHHHHHHHH--HH-HHh-CCcEEEEE-cChhhccC-------CCCHHHH-HHHHHHHHHHHHHhC
Confidence 556778888999999977665222 12 334 78876443 22222100 0344433 335566777888899
Q ss_pred CCCCC-CCCCcchhH
Q 012397 122 CLPPT-YQPRVSDHM 135 (464)
Q Consensus 122 i~~~~-~~~r~s~~~ 135 (464)
+.+.- .+...|+..
T Consensus 73 ldp~k~~if~qS~~~ 87 (348)
T 2yy5_A 73 LDPQKACLFLQSDLL 87 (348)
T ss_dssp CCTTTEEEEEGGGCH
T ss_pred CChhHeEEEECCccc
Confidence 97421 344445443
|
| >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A | Back alignment and structure |
|---|
Probab=90.32 E-value=0.16 Score=51.08 Aligned_cols=76 Identities=9% Similarity=-0.044 Sum_probs=44.8
Q ss_pred CcceEEEeCCCCC-CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 38 ~~~~v~~~~P~p~-G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
++...+.||--|+ |.|||||.-+++ .+.++++..|+.+.+.-+=. ++ .+.. ..++++ +.++...+..+
T Consensus 106 ~~~~~vy~G~dPTag~LHLGh~v~~~---~~~~lQ~~~G~~~iilIgD~-ta--~igd----~lt~e~-i~~n~~~~~~~ 174 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEAMHVGHLIPFI---FTKWLQDVFNVPLVIQMTDD-EK--YLWK----DLTLDQ-AYGDAVENAKD 174 (437)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHH---HHHHHHHHHTCCEEEEECHH-HH--HHHS----SCCHHH-HHHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHH---HHHHHHHHhCCcEEEEEecc-ee--eecC----CCCHHH-HHHHHHHHHHH
Confidence 4556677888999 999999976554 23333333899876554321 11 1111 345544 33444455667
Q ss_pred HHhcCCCC
Q 012397 117 MADLQCLP 124 (464)
Q Consensus 117 l~~lgi~~ 124 (464)
+-.+|+.+
T Consensus 175 ~lA~GlDp 182 (437)
T 1r6u_A 175 IIACGFDI 182 (437)
T ss_dssp HHTTTCCG
T ss_pred HHHhCCCc
Confidence 77778763
|
| >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=87.10 E-value=0.33 Score=48.94 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=46.1
Q ss_pred CcceEEEeCCCCC-CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 38 ~~~~v~~~~P~p~-G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
++...+.||--|+ |.|||||.-.+ -.+.++++.-|..+.+. +.|... .. .+...+++++ .++...+.++
T Consensus 89 g~p~~vytG~dPTagsLHLGH~v~~---~~l~~lQ~~~g~~v~I~--IgD~~a-~~---~r~~lt~E~I-~~n~~~~~~~ 158 (451)
T 3foc_A 89 GHPIYIYTGRGPSSGALHLGHLLPF---IFTKYLQDAFKCYVVIQ--ITDDEK-FL---RNRSLSYAEV-DSYTRENIKD 158 (451)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHH---HHHHHHHHHHTCEEEEE--ECHHHH-HH---HCTTCCHHHH-HHHHHHHHHH
T ss_pred CCCeEEEecCCCCCCCccHHHHHHH---HHHHHHHHccCceEEEE--eeCcHH-hh---cccCCCHHHH-HHHHHHHHHH
Confidence 4556777889999 89999995443 33444444447777664 222221 11 1224565544 4455577778
Q ss_pred HHhcCCCC
Q 012397 117 MADLQCLP 124 (464)
Q Consensus 117 l~~lgi~~ 124 (464)
+-.+|+.+
T Consensus 159 ~lA~GlDp 166 (451)
T 3foc_A 159 IIACGFDP 166 (451)
T ss_dssp HHTTTCCG
T ss_pred HHHcCCCC
Confidence 88888863
|
| >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=85.84 E-value=2 Score=43.23 Aligned_cols=53 Identities=19% Similarity=0.175 Sum_probs=30.1
Q ss_pred EEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeee-eCCc--ccccccCC-ccCHHH
Q 012397 239 IHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVT-NNNE--KMSKSLGN-FFTIRQ 295 (464)
Q Consensus 239 i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~-~~G~--KmSks~gn-~i~~~d 295 (464)
+.+.|.|+.+ |. ..++-.+-.. .+.+.+ +++.++. ++|. |||||.+| .|.+.|
T Consensus 290 ~VPvG~DQ~~-hl--el~Rdia~rfn~~~p~~-~~~~~l~gLdG~~~KMSKS~~ns~I~l~D 347 (451)
T 3foc_A 290 LIASGIEQDP-YF--RLARDLAPRMGHPKNAY-LLGKFLPGLQGSGTKMSASDPNSAIYLTD 347 (451)
T ss_dssp EEEECTTTHH-HH--HHHHHHTTTTTSCCCEE-EEECCCCBTTBTTCCCCTTCGGGSCBTTC
T ss_pred eeeeecchHH-HH--HHHHHHHHHhCCCCCee-ecCCcccCCCCCCCccCCCCCCCeeeecC
Confidence 7788999653 22 2344443322 222323 4455554 3764 99999988 676543
|
| >1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A | Back alignment and structure |
|---|
Probab=85.09 E-value=1.1 Score=44.45 Aligned_cols=39 Identities=13% Similarity=-0.010 Sum_probs=26.9
Q ss_pred ceEEEeCCCCCCc-CCcccchhHHHHHHHHHHHHHCCCeEEEec
Q 012397 40 VGMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVR 82 (464)
Q Consensus 40 ~~v~~~~P~p~G~-lHiGHar~~l~~D~laR~lr~~G~~V~~i~ 82 (464)
...+.||--|+|+ |||||.-.. -.+.+++ ..|+++.+.-
T Consensus 64 ~~~vy~G~dPTg~sLHlGhlv~l---~~l~~lQ-~~G~~~~~lI 103 (392)
T 1y42_X 64 RIGAYVGIDPTAPSLHVGHLLPL---MPLFWMY-LEGYKAFTLI 103 (392)
T ss_dssp CCEEEEEECCCSSSCBGGGHHHH---HHHHHHH-HHTCEEEEEE
T ss_pred CCEEEEeecCCCCCccHHHHHHH---HHHHHHH-HcCCcEEEEE
Confidence 3456678889999 999995532 2344444 4699988664
|
| >2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* | Back alignment and structure |
|---|
Probab=83.82 E-value=0.55 Score=45.96 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=27.0
Q ss_pred cceEEEeCCCCCCc-CCcccchhHHHHHHHHHHHHHCCCeEEEec
Q 012397 39 KVGMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVR 82 (464)
Q Consensus 39 ~~~v~~~~P~p~G~-lHiGHar~~l~~D~laR~lr~~G~~V~~i~ 82 (464)
+...+.||--|+|+ |||||+.... .+.+ +...|+++.+.-
T Consensus 45 ~~~~vy~G~~PTg~sLHLGhl~~l~---~~~~-lQ~~G~~~~~lI 85 (356)
T 2pid_A 45 FPQTIYCGFDPTADSLHVGHLLALL---GLFH-LQRAGHNVIALV 85 (356)
T ss_dssp -CCEEEEEECCSSSSCBHHHHHHHH---HHHH-HHHTTCEEEEEE
T ss_pred CCCEEEEeecCCCCcccHHHHHHHH---HHHH-HHHCCCcEEEEE
Confidence 33566788889997 9999955333 2444 445799987664
|
| >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=83.39 E-value=0.64 Score=46.65 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=27.5
Q ss_pred ceEEEeCCCCCCc-CCcccchhHHHHHHHHHHHHHCCCeEEEecC
Q 012397 40 VGMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVRN 83 (464)
Q Consensus 40 ~~v~~~~P~p~G~-lHiGHar~~l~~D~laR~lr~~G~~V~~i~~ 83 (464)
...+.||--|+|+ |||||+.... .+.+ +...|+++.++-|
T Consensus 32 ~~~iy~G~dPTg~sLHLGhlv~l~---~l~~-lQ~~G~~~i~lIg 72 (432)
T 2jan_A 32 PMTVYAGFDPTAPSLHAGHLVPLL---TLRR-FQRAGHRPIVLAG 72 (432)
T ss_dssp CCEEEEEECCSSSSCBGGGHHHHH---HHHH-HHHTTCEEEEEEC
T ss_pred CCEEEEeeCCCCCCcCHHHHHHHH---HHHH-HHHCCCcEEEEEc
Confidence 3456678889996 9999955433 3444 4457999887653
|
| >1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* | Back alignment and structure |
|---|
Probab=83.33 E-value=0.81 Score=44.68 Aligned_cols=70 Identities=16% Similarity=0.067 Sum_probs=40.9
Q ss_pred CeeEEEecccCccccchHHHHHHhhc---cC---CCCccEEEEeeeee-eCCc-ccccccCCccCHHHHHHhcCchhHHH
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAA---CQ---DSNVSYWMHNGHVT-NNNE-KMSKSLGNFFTIRQITERYHPLALRH 307 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~---~~---~~~~~~~~~~~~v~-~~G~-KmSks~gn~i~~~dll~~~~~dalR~ 307 (464)
..+++++|.|+.. |.....-..... .+ +.|..++.++..+. ++|+ |||||.||.|++.| +++.++=
T Consensus 162 ~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d-----~p~~i~~ 235 (351)
T 1yi8_B 162 GATLVPVGDDQLP-MLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGD-----SADEVAR 235 (351)
T ss_dssp TCSEEEECGGGHH-HHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTC-----CHHHHHH
T ss_pred CCCEEEecCCcHH-HHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCC-----CHHHHHH
Confidence 5789999999653 332222111111 12 22332221233443 3887 99999999998876 4677776
Q ss_pred HHhh
Q 012397 308 FLIS 311 (464)
Q Consensus 308 ~ll~ 311 (464)
.+.+
T Consensus 236 Ki~~ 239 (351)
T 1yi8_B 236 KVMG 239 (351)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6665
|
| >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A | Back alignment and structure |
|---|
Probab=81.42 E-value=2 Score=43.05 Aligned_cols=55 Identities=16% Similarity=0.031 Sum_probs=32.6
Q ss_pred CeeEEEecccCccccchHHHHHHhh--ccCCCCccEEEEeeeee-eCC--cccccccCC-ccCHHH
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCA--ACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQ 295 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a--~~~~~~~~~~~~~~~v~-~~G--~KmSks~gn-~i~~~d 295 (464)
..++..+|.|+.. |. ..++-.+ .+.+.|. . +++.++. ++| +|||||.+| .|++.|
T Consensus 256 ~~~lVpvG~DQ~~-~i--~l~Rdla~r~~~~~P~-~-l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 256 IQCLIPCAIDQDP-YF--RMTRDVAPRIGYPKPA-L-LHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp CEEEEEEEGGGHH-HH--HHHHHHGGGGTCCCCE-E-EEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred CceEEEeehhhHH-HH--HHHHHHHHHhCCCCce-E-eecccccCCCCCccccCCCCCCCeeeccC
Confidence 3466668999642 22 2233322 2323332 3 4455665 488 799999999 798765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 464 | ||||
| d1li5a2 | 315 | c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR | 1e-94 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 8e-49 | |
| d1pfva2 | 350 | c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe | 2e-38 | |
| d2d5ba2 | 348 | c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR | 9e-36 | |
| d1rqga2 | 361 | c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe | 4e-34 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 1e-16 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 1e-06 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 5e-15 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 1e-06 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 7e-11 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 0.003 | |
| d1f7ua2 | 348 | c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgR | 2e-08 | |
| d1j09a2 | 305 | c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS | 1e-06 | |
| d1li5a1 | 87 | a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (Cy | 3e-05 | |
| d1iq0a2 | 370 | c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS | 2e-04 |
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 286 bits (732), Expect = 1e-94
Identities = 168/314 (53%), Positives = 207/314 (65%), Gaps = 1/314 (0%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKI+N++T+QKE F PI G+VGMYVCG+T YDL H+GH R V+FD++ RYL L ++
Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKL 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHM-EQ 137
YVRN TD+DDKII+RAN+ GE+ +++ +R E D L L P +PR + H+ E
Sbjct: 62 KYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEI 121
Query: 138 IKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
I+ I GDV F V P YG LS Q L+ +AG RV V KRNP DF
Sbjct: 122 IELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEPSW SPWG GRPGWHIECSAM+ L + FDIHGGG DL+FPHHENEIAQ
Sbjct: 182 VLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S A V+YWMH+G V + EKMSKSLGNFFT+R + + Y +R+FL+S HYRS
Sbjct: 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQ 301
Query: 318 LNYSVLQLDSASDA 331
LNYS L A A
Sbjct: 302 LNYSEENLKQARAA 315
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 167 bits (423), Expect = 8e-49
Identities = 35/314 (11%), Positives = 81/314 (25%), Gaps = 24/314 (7%)
Query: 29 KELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD 88
++ + + G+T H+G+ R + ++ L EV ++ + D D
Sbjct: 8 DKIIRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYD 67
Query: 89 -----------------DKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRV 131
I D S + + +++ ++ L
Sbjct: 68 RFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASE 127
Query: 132 SDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRK 191
+ + I + + + + K + R + +
Sbjct: 128 LYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQ-PPLPENWWPAMVYCPEHRREAEIIE 186
Query: 192 RNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHH 251
+ +K + E D G + W ++ + D G D +
Sbjct: 187 WDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDW---PMRWSHFGVDFEPAGKDHLVAGS 243
Query: 252 ENEIAQSCA-ACQDSNVSYWMHNGHVTNNNE--KMSKSLGNFFTIRQITERYHPLALRHF 308
+ + + V + KMS S GN + + E P +R
Sbjct: 244 SYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFI 303
Query: 309 LISAHYRSPLNYSV 322
+ +
Sbjct: 304 YARHRPNKEIKIDL 317
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 140 bits (354), Expect = 2e-38
Identities = 49/325 (15%), Positives = 92/325 (28%), Gaps = 52/325 (16%)
Query: 48 TAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSN 107
A HLGH + D+ RY EV ++ I+ +A LG P +
Sbjct: 12 YANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIG 71
Query: 108 RYCQEYLVDMADLQCLPPTYQPRVSD-HMEQIKDMITQIINNDCAYVVEGDVFFAVE--- 163
QE+ D A Y S+ + + + + +++ N + E
Sbjct: 72 EMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGM 131
Query: 164 ----------------KSPNY-GRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAG 206
S ++ L A+ + N +
Sbjct: 132 FLPDRFVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQW 191
Query: 207 EPSWDSPWGPGRPGWHIECSAMSAHYLSSKF----------------------------D 238
+ S D+P+ +
Sbjct: 192 DISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAEL 251
Query: 239 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 298
H G D+++ H A + + ++H G+VT N KMSKS G F
Sbjct: 252 YHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVH-GYVTVNGAKMSKSRGTFIKASTWLN 310
Query: 299 RYHPLALRHFLIS--AHYRSPLNYS 321
+ +LR++ + + ++ +
Sbjct: 311 HFDADSLRYYYTAKLSSRIDDIDLN 335
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 133 bits (335), Expect = 9e-36
Identities = 43/319 (13%), Positives = 80/319 (25%), Gaps = 51/319 (15%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEY 113
HLGHA V D L R+ ++ + + + R A GE+P + +R +
Sbjct: 19 HLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRF 78
Query: 114 LVDMADLQCLPPTYQPRVSDHMEQIKDMIT-QIINNDCAYVVEGDVFFAVEKSPNYGRLS 172
L + + +++ ++ ++ Y E + + V Y
Sbjct: 79 KRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKE 138
Query: 173 GQRLENNRAGERVAVDSRKRNPADFALWKAAKA--------------------------- 205
G V ++
Sbjct: 139 LVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPI 198
Query: 206 -----GEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCA 260
P PWG P + + L + +
Sbjct: 199 GDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIG 258
Query: 261 ACQDSNVS-----------------YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPL 303
+ + + + KMSK+LGN + E+Y
Sbjct: 259 KDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRD 318
Query: 304 ALRHFLIS-AHYRSPLNYS 321
ALR++L+ Y S
Sbjct: 319 ALRYYLLREIPYGQDTPVS 337
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 129 bits (324), Expect = 4e-34
Identities = 44/338 (13%), Positives = 86/338 (25%), Gaps = 64/338 (18%)
Query: 48 TAYDLSHLGHARAA-VSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLS 106
A H GH A + D+ RYL +V ++ + I RA G +P +
Sbjct: 12 YANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIV 71
Query: 107 NRYCQEYLVDMADLQCLPPTYQPRVSDHMEQ-IKDMITQIINNDCAYVVEGDVFF----- 160
+ + ++ + + + + ++ + N +
Sbjct: 72 DEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDK 131
Query: 161 -------AVEKSPNYGRLSGQ--------------------------------------- 174
A+ P R S
Sbjct: 132 MFLPDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEE 191
Query: 175 RLENNRAGERVAVDSRKRNPADFALWKAAKAG-EPSWDSPWGPGRPGWHIECSAMSAHYL 233
R + V + + L+ +A + R G E +
Sbjct: 192 RAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNID 251
Query: 234 SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN---------VSYWMHNGHVTNNNEKMS 284
IH G D I H A A + + N ++T +K S
Sbjct: 252 GQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFS 311
Query: 285 KSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYS 321
S + + + + LR++L + ++S
Sbjct: 312 TSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFS 349
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 79.6 bits (195), Expect = 1e-16
Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 7/159 (4%)
Query: 179 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKF- 237
+ E + +R D G P+ + + L ++
Sbjct: 291 DLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPE 350
Query: 238 -----DIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFF 291
D++ G D + I S A S + + +G V +KMSKSLGN
Sbjct: 351 LSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVI 410
Query: 292 TIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD 330
Q+ ++ R ++ S Y + + S L SD
Sbjct: 411 VPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSD 449
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 48.0 bits (113), Expect = 1e-06
Identities = 23/187 (12%), Positives = 49/187 (26%), Gaps = 18/187 (9%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEY 113
H+GHA + D + RY YV + I + G + +S +E
Sbjct: 64 HMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREK 123
Query: 114 LVDMADLQ---------------CLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDV 158
+ A Q Y ++ + ++ + Y + V
Sbjct: 124 CKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPV 183
Query: 159 FFAVEKSPNYGRLSGQRLENNRAG---ERVAVDSRKRNPADFALWKAAKAGEPSWDSPWG 215
+++ + + + R A + + ++ WG
Sbjct: 184 YWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWG 243
Query: 216 PGRPGWH 222
R
Sbjct: 244 KTRIYNM 250
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 74.6 bits (182), Expect = 5e-15
Identities = 39/246 (15%), Positives = 70/246 (28%), Gaps = 26/246 (10%)
Query: 109 YCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNY 168
E + +++ P Q + + + GD+ F E+
Sbjct: 177 PRCETTLSDLEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKV 236
Query: 169 GR----------LSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGR 218
+S Q ++ D + N + + SP
Sbjct: 237 NMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRD 296
Query: 219 PGWHIECSAMSAHYLSS--------------KFDIHGGGIDLIFPHHENEIAQSCAACQD 264
+ + LS+ D+ G D++F +
Sbjct: 297 EDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGE 356
Query: 265 SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSV 322
+ +G V + +KMSKS GN ++ ERY ALR LI A + +
Sbjct: 357 RPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDL 416
Query: 323 LQLDSA 328
L+ A
Sbjct: 417 RWLEMA 422
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 48.4 bits (114), Expect = 1e-06
Identities = 31/279 (11%), Positives = 67/279 (24%), Gaps = 30/279 (10%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTD----VDDKIIRRANDLGENPLSLSNRY 109
H+GHA D L RY E ++ + R G+ L
Sbjct: 50 HMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREK 109
Query: 110 CQ---------------EYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV 154
+ L + ++ ++ + AY
Sbjct: 110 FLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRA 169
Query: 155 EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD---FALWKAAKAGEPSWD 211
V + L + A+ + + K + G+ ++
Sbjct: 170 PRLVNWCPRCETTLSDLEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFV 229
Query: 212 SPWGPGR--------PGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ 263
W+I H + + + +++ P E SC AC
Sbjct: 230 PERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACG 289
Query: 264 DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHP 302
+ ++ S + + + ++P
Sbjct: 290 SPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYP 328
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 61.5 bits (148), Expect = 7e-11
Identities = 20/116 (17%), Positives = 32/116 (27%), Gaps = 2/116 (1%)
Query: 208 PSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNV 267
W H S D GID +
Sbjct: 327 DVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAF 386
Query: 268 SYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYS 321
+ +G + + +KMSKS GN I ++ ALR ++ A + +
Sbjct: 387 KNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFG 442
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 37.6 bits (86), Expect = 0.003
Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 20/125 (16%)
Query: 48 TAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNF--------------------TDV 87
TA L H+GHA+A DL RY + ++
Sbjct: 48 TANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREI 107
Query: 88 DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIIN 147
+ I R N + + + + +A L Y ++E I + + +
Sbjct: 108 EAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFD 167
Query: 148 NDCAY 152
Y
Sbjct: 168 RGLLY 172
|
| >d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (127), Expect = 2e-08
Identities = 30/265 (11%), Positives = 65/265 (24%), Gaps = 20/265 (7%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVT-----------------YVRNFTDVDDKIIRRAN 96
H GH R+ + L E L EV + + + + +
Sbjct: 24 HAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIH 83
Query: 97 DLGENPLSLSNRYCQ--EYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV 154
L + + ++ + + + Y R+ D E+ + + +
Sbjct: 84 HLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYI 143
Query: 155 EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPW 214
+ ++ G + +A + L K + +
Sbjct: 144 DTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIV 203
Query: 215 GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNG 274
+ A + I +I + AQ + +
Sbjct: 204 QKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQ 263
Query: 275 HVTNNN-EKMSKSLGNFFTIRQITE 298
HV + MS G + I E
Sbjct: 264 HVNFGMVQGMSTRKGTVVFLDNILE 288
|
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Score = 47.5 bits (112), Expect = 1e-06
Identities = 30/279 (10%), Positives = 63/279 (22%), Gaps = 42/279 (15%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEY 113
H+G A A L+ Y + ++ D D +
Sbjct: 15 HVGTAYIA-----LFNYAWARRNGGRFIVRIEDTDRARYVPG-------------AEERI 56
Query: 114 LVDMADLQCLP--------PTYQPRVSDHMEQIKDMITQIINNDCAYV---VEGDVFFAV 162
L + L P R S+ + + +++ AY ++
Sbjct: 57 LAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIR 116
Query: 163 EKSPNYGRLSGQRLENNRAGE---------RVAVDSRKRNPADFALWKAAKAGEPSWDSP 213
++ Y + R+ V L
Sbjct: 117 KEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDV 176
Query: 214 WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHN 273
G+ A + + + + A ++
Sbjct: 177 VLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLL--YRAFGWEAPRFYHMP 234
Query: 274 GHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLIS 311
+ K+SK ++ + P ALR++L
Sbjct: 235 LLRNPDKTKISKRKS-HTSLDWYKAEGFLPEALRNYLCL 272
|
| >d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 87 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (94), Expect = 3e-05
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 13/79 (16%)
Query: 361 AAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIES 420
A F M DD NT D + +N + +
Sbjct: 15 VAPAGGEAFEARFIEAMDDDFNTPEAY-SVLFDMAREVNRLKA------------EDMAA 61
Query: 421 LRKIENEVKEVLRILGLLP 439
+ + ++++ +LGLL
Sbjct: 62 ANAMASHLRKLSAVLGLLE 80
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Score = 41.1 bits (95), Expect = 2e-04
Identities = 38/295 (12%), Positives = 78/295 (26%), Gaps = 53/295 (17%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVT-----------------YVRNFTDVDDKIIRRAN 96
H+GH R D + R L + EV +R++ D + +
Sbjct: 23 HVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDH 82
Query: 97 DLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG 156
G + L E L + + L + + + + +I ++ A
Sbjct: 83 FAGRAYVRLHQDPEYERLQPAIE-EVLHALERGELREEVNRILLAQMATMHALNARYDLL 141
Query: 157 DVFFA------VEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD-------------- 196
++K+ S A+
Sbjct: 142 VWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRSNG 201
Query: 197 ----------FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDL 246
F WK + P PG + SA + K + +D+
Sbjct: 202 TATYYAKDIAFQFWKMGILEGLRFRPYENPYYPG--LRTSAPEGEAYTPKAEETINVVDV 259
Query: 247 IFPHHENEIAQSCAAC---QDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 298
H + + + A + ++ + V +MS G ++ ++ E
Sbjct: 260 RQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLE 314
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| d1li5a2 | 315 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 100.0 | |
| d1pfva2 | 350 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 100.0 | |
| d1ivsa4 | 425 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 100.0 | |
| d2d5ba2 | 348 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 100.0 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 100.0 | |
| d1ffya3 | 450 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 100.0 | |
| d1ilea3 | 452 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 100.0 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 100.0 | |
| d1irxa2 | 317 | Class I lysyl-tRNA synthetase {Archaeon Pyrococcus | 99.97 | |
| d1f7ua2 | 348 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 99.95 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 99.94 | |
| d1j09a2 | 305 | Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph | 99.8 | |
| d1nzja_ | 286 | Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c | 99.66 | |
| d1gtra2 | 331 | Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co | 99.65 | |
| d1f7ua1 | 124 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 99.28 | |
| d2d5ba1 | 152 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 99.27 | |
| d1iq0a1 | 126 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 99.24 | |
| d1rqga1 | 210 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 99.23 | |
| d1pfva1 | 162 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 99.2 | |
| d1ivsa2 | 218 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 99.09 | |
| d1ffya1 | 273 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 99.05 | |
| d1ilea1 | 180 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 99.05 | |
| d1h3na1 | 128 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 98.99 | |
| d1j1ua_ | 306 | Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc | 97.64 | |
| d1li5a1 | 87 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 97.61 | |
| d1h3fa1 | 343 | Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi | 97.51 | |
| d1n3la_ | 339 | Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie | 96.83 | |
| d1jila_ | 323 | Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au | 95.97 | |
| d2ts1a_ | 319 | Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth | 92.0 | |
| d1r6ta2 | 386 | Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo | 90.25 | |
| d1i6la_ | 326 | Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste | 81.82 | |
| d2ts1a_ | 319 | Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth | 80.12 | |
| d1jila_ | 323 | Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au | 80.05 |
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-56 Score=440.35 Aligned_cols=312 Identities=54% Similarity=0.955 Sum_probs=271.7
Q ss_pred eeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc
Q 012397 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL 98 (464)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~ 98 (464)
+++|||++|+++.|.+..|+++.||+|||||||++||||+|++++||+++|+||..|++|.+++|+||||.+|..+|++.
T Consensus 2 ~~~~~~~~~~~~~f~~~~~~~~~~yv~Gptv~g~~HIGH~R~av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~~ 81 (315)
T d1li5a2 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN 81 (315)
T ss_dssp CEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHT
T ss_pred ceEEeCCCCceeeeecCCCCeEEEEecCCcCCCCcccchhHHHHHHHHHHHHHHHcCCcEEEEecccchhHHHHHHHhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecC-cEEEcCCCCCCCCCCCCcccc
Q 012397 99 GENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG-DVFFAVEKSPNYGRLSGQRLE 177 (464)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~-~~~~~~~~~~~~g~l~~~~~~ 177 (464)
|++++++++++..++.++++.++|..++.+.+++++.+.+.+.+.+|..+|.+|.... .++.+...++.++..+.....
T Consensus 82 ~~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (315)
T d1li5a2 82 GESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLD 161 (315)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC---
T ss_pred hhccccccccchhhhhhhHHhcCCCCCcEEEecchhhhhhhhHHHHhhccCceeccccceEEeecccccccCcccccccc
Confidence 9999999999999999999999999778888888899999999999999999886644 566666678888887766665
Q ss_pred ccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHH
Q 012397 178 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (464)
Q Consensus 178 ~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~ 257 (464)
.+.+|.++.......++.|+.+||..+.+++.+...||.+.|+|+.++.+.....++..+++++.|.|+..+|.....+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~l~~~~~~~~~~~d~~~~~~~~~~~~ 241 (315)
T d1li5a2 162 QLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241 (315)
T ss_dssp -------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHH
T ss_pred ccccCCcccccccccChhhhhccccCccCCceeccCCceecccccchhhhHHHHHcCCcccccccccccccccccccchh
Confidence 55556555444445677889999988888887888999999999998887777778888999999999999999888888
Q ss_pred HhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHH
Q 012397 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD 330 (464)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~ 330 (464)
..+.....++.+++|++|++++|+|||||+||+|+|+|+++.+|+|++||||++.++.++++||+|.+.++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~l~~~G~KMSKs~Gn~V~~~dlle~~g~D~lRy~lls~~~~s~ldFs~e~l~~a~~ 314 (315)
T d1li5a2 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARA 314 (315)
T ss_dssp HHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHH
T ss_pred hhcccccccccEEEEEEEEecCCcEecCcCCCcccHHHHHHhCCHHHHHHHHHcCCCCCCCCcCHHHHHHHhh
Confidence 8777777778888998999999999999999999999999999999999999999999999999999998765
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-46 Score=374.57 Aligned_cols=289 Identities=18% Similarity=0.143 Sum_probs=212.7
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++..|.++.|+|||+|||||+|+++++|+++|+||++|++|.+++|+||||+||+.+|+++|.+++++++.+...|.+++
T Consensus 2 ~~~~i~~~~P~~nG~lHiGHar~~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~~ 81 (350)
T d1pfva2 2 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDF 81 (350)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCCCCCCccccccHHHHHHHHHHHHHHhcCCceEecCccCCccHHHHHHHHHcCCCHHHHHHhHHHHHHHHH
Confidence 45666777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCcc-hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------CCCCCCCCCccccccccCC-CcccC
Q 012397 118 ADLQCLPPTYQPRVS-DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------SPNYGRLSGQRLENNRAGE-RVAVD 188 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s-~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------~~~~g~l~~~~~~~~~~g~-~~~~~ 188 (464)
+.|+|..+....+.+ .+.+.+++++.+|.++|++|+++..++||+.+ +..||. .+....... .+.+.
T Consensus 82 ~~l~i~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~l~d~~~~~g~----~~~~~~~~~~f~~l~ 157 (350)
T d1pfva2 82 AGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVVSGA----TPVMRDSEHFFFDLP 157 (350)
T ss_dssp HHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGTTTCC----CCEEEEEEEEEECGG
T ss_pred HHcCCCcccCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCCCeEcCCceeccCC----CccceecchheeehH
Confidence 999998644443333 57788999999999999999999999998764 222332 110000000 00000
Q ss_pred Ccc--------cC---c-----ccccccccccCCCCcccC-CCCCCCC--------chhhHHHHHH-------H------
Q 012397 189 SRK--------RN---P-----ADFALWKAAKAGEPSWDS-PWGPGRP--------GWHIECSAMS-------A------ 230 (464)
Q Consensus 189 ~~k--------~~---~-----~d~~~w~~~~~g~~~~~~-~wg~~~P--------~w~~~~~~~~-------~------ 230 (464)
..+ .. + ....++....+...++.. .||...| .|..++.... .
T Consensus 158 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (350)
T d1pfva2 158 SFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSV 237 (350)
T ss_dssp GGHHHHHHHHTTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHhhccCCccccccccccCCccccCCCCcccccccccccchhhhhhccccccccch
Confidence 000 00 0 001111111122233333 2344333 1333221110 0
Q ss_pred ---hh---cCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchh
Q 012397 231 ---HY---LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLA 304 (464)
Q Consensus 231 ---~~---~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~da 304 (464)
.+ ......+|++|+|++++|+.++++++.+.+..++.++++ |||++++|+|||||+||+|+|.|++++||+|+
T Consensus 238 ~~~~~~~~~~~~~~~h~~G~D~~~~h~~~~~~~~~a~~~~~~~~~~~-~g~l~~~G~KMSKS~GN~i~~~dll~~~g~D~ 316 (350)
T d1pfva2 238 SFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFV-HGYVTVNGAKMSKSRGTFIKASTWLNHFDADS 316 (350)
T ss_dssp HHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEE-ECCEEETTBSCCTTTTCCCBHHHHHHHSCHHH
T ss_pred hhhhccccCCCcceeeccchhhHHHHHhhHHHHhhhcCCCccceEEe-cccEEECCeEccCcCCCCCCHHHHHHHCCHHH
Confidence 11 112445899999999999999999999887778787765 59999999999999999999999999999999
Q ss_pred HHHHHhhc-CC-CCccCCCHHHHHHHHHH
Q 012397 305 LRHFLISA-HY-RSPLNYSVLQLDSASDA 331 (464)
Q Consensus 305 lR~~ll~~-~~-~~~~~f~~~~~~~~~~~ 331 (464)
+||||++. +. .+|++|+++.+.+..|+
T Consensus 317 lR~~l~s~~~~~~~d~dfs~~~~~~~~N~ 345 (350)
T d1pfva2 317 LRYYYTAKLSSRIDDIDLNLEDFVQRVNA 345 (350)
T ss_dssp HHHHHHHHCCSSCCCEEECHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCCCCCCHHHHHHHHHH
Confidence 99999985 55 57899999999887763
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.5e-44 Score=369.02 Aligned_cols=289 Identities=18% Similarity=0.162 Sum_probs=203.9
Q ss_pred cccCCCCcceEEEe--CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc----CCCh---
Q 012397 32 FTPIVRGKVGMYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL----GENP--- 102 (464)
Q Consensus 32 ~~~~~~~~~~v~~~--~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~----g~~~--- 102 (464)
+.....++..+++| +|+|||+|||||+|+++++|+++|++|++|++|.|++|+|+||++|...|++. |..+
T Consensus 26 ~~~~~~~~~~f~i~~~pPy~NG~lHlGH~~~yv~~Dv~~Ry~r~~G~~V~~v~g~D~hG~~i~~~aek~~~~~~~~~~~~ 105 (425)
T d1ivsa4 26 VANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDL 105 (425)
T ss_dssp CCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHHHHHTTTCCGGGS
T ss_pred ccCCCCCCCcEEEEcCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCceeecCcccCCcchHHHHHHHhhcccCCChHHh
Confidence 33334444455555 47888999999999999999999999999999999999999999999988763 4433
Q ss_pred ---------HHHHHHHHHHHHHHHHhcCCCCCC-CCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------
Q 012397 103 ---------LSLSNRYCQEYLVDMADLQCLPPT-YQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------ 164 (464)
Q Consensus 103 ---------~~~~~~~~~~~~~~l~~lgi~~~~-~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------ 164 (464)
..++.++.+.+.+.+++||+..+. ...+++ +|.+.+++++.+|.++|++|+++..++||+.|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~d~~~~~~t~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~~c~~~~~~l~~ 185 (425)
T d1ivsa4 106 GREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSD 185 (425)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEECCG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcchhhcccchhhhhhhHHHHhhhhccCcccccceeecccccccccccc
Confidence 445677889999999999998532 222333 68899999999999999999999999999875
Q ss_pred -----CCCCCCCCCccc--------ccc--------ccCC-CcccCCcc-------cCcccccccccccCCCCcccCCCC
Q 012397 165 -----SPNYGRLSGQRL--------ENN--------RAGE-RVAVDSRK-------RNPADFALWKAAKAGEPSWDSPWG 215 (464)
Q Consensus 165 -----~~~~g~l~~~~~--------~~~--------~~g~-~~~~~~~k-------~~~~d~~~w~~~~~g~~~~~~~wg 215 (464)
|..||....... .+. ..+. .+..+..+ ....|+. ++++..||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~l~d~~---------isr~~~~g 256 (425)
T d1ivsa4 186 LEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWN---------ISRQLWWG 256 (425)
T ss_dssp GGEEEETTTCSBCEEEECCEEEECHHHHHHHHHHHHHHTCCEESSSTHHHHHHHHHHTCCCEE---------CEECCSSS
T ss_pred cccccccccCcccccccccchhhccchhhccchhhhhcCCcceeccccceeeehhhhhcCcce---------eecccccC
Confidence 223332110000 000 0000 00000000 0001221 22333344
Q ss_pred CCCCc-----------------------------------------hhhHHHHHHH--h--------hcCCCeeEEEecc
Q 012397 216 PGRPG-----------------------------------------WHIECSAMSA--H--------YLSSKFDIHGGGI 244 (464)
Q Consensus 216 ~~~P~-----------------------------------------w~~~~~~~~~--~--------~~~~~~~i~~~G~ 244 (464)
.+.|. |+.+...... . ...++.++|++|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~da~~~~~~~~~~~~~~~~~~~~~p~di~~~G~ 336 (425)
T d1ivsa4 257 HQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGY 336 (425)
T ss_dssp CCCCCEEETTTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCEECHHHHHTSCTTTTTTTTTTCSHHHHSCSBSCEEEEG
T ss_pred CccceeeccCcceeecCccccccccccccccccCccccccCccccccccchhHHHHhhCCCcChHHHhCCCCceEEEEEe
Confidence 33332 2221100000 0 0124679999999
Q ss_pred cCccccchHHHHHHhhccCC-CCccEEEEeeeee-eCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCC
Q 012397 245 DLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYS 321 (464)
Q Consensus 245 D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~ 321 (464)
|++++|+.++++++.++.+. |+.++++ |||++ .+|+|||||+||+|++.|++++||+|++||||++. +.++|++|+
T Consensus 337 Di~~~h~~~~~a~~~~~~~~~p~~~v~~-hg~~L~~~G~KMSKS~Gn~I~~~e~l~~~g~D~lR~~L~~~~~~~~d~dF~ 415 (425)
T d1ivsa4 337 DILFLWVSRMEVSGYHFMGERPFKTVLL-HGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLD 415 (425)
T ss_dssp GGTTTTHHHHHHHHHHHSSSCSBSEEEE-ECCEECTTSSBCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECC
T ss_pred hhhhHHHHHHHHHHHHhcCCCccceEEE-cceEECCCCCCcCCCCCCCcCHHHHHHHcCchHHHHHHHhcCCCCCCCccC
Confidence 99999999999999988765 5677766 58865 59999999999999999999999999999999986 888999999
Q ss_pred HHHHHHHHH
Q 012397 322 VLQLDSASD 330 (464)
Q Consensus 322 ~~~~~~~~~ 330 (464)
++.+++++|
T Consensus 416 ~~~~~~~~n 424 (425)
T d1ivsa4 416 LRWLEMARN 424 (425)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhhccC
Confidence 999987765
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7.2e-44 Score=353.94 Aligned_cols=290 Identities=20% Similarity=0.185 Sum_probs=212.3
Q ss_pred eEEEeCC--CCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 41 GMYVCGV--TAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 41 ~v~~~~P--~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
+++||+| +|||+|||||+|+++++|+|+|+||++|++|.|++|+||+|++|+.+|+++|+++++++..+...+.+.++
T Consensus 4 ~~~~~~~~PypnG~lHiGH~r~~v~~D~l~R~lr~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (348)
T d2d5ba2 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (348)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCCcccccCHHHHHHHHHHHHHHhcCCCeEecCcCCCCCHHHHHHHHHcCCCHHHhhhhHHHHHHHHHH
Confidence 3555555 55599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcc----------
Q 012397 119 DLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVA---------- 186 (464)
Q Consensus 119 ~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~---------- 186 (464)
.+||.+ +.+.+.. .+...++.++.++.++|++|++..++++|+.+........-........|...+
T Consensus 84 ~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (348)
T d2d5ba2 84 LLGIAY-DDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFR 162 (348)
T ss_dssp HTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEEC
T ss_pred hcCccc-cceeecccchhhHHHHHHHHHHHhhCccccccccccccccccceeccccccccccccCCCceEEecccccccc
Confidence 999985 5444433 566789999999999999999999999988753211110000000000011000
Q ss_pred cCCc--------ccCcccccc---------ccc-----ccCCCCcccCCCCCCCCc--------hhhHHHHHHHh-----
Q 012397 187 VDSR--------KRNPADFAL---------WKA-----AKAGEPSWDSPWGPGRPG--------WHIECSAMSAH----- 231 (464)
Q Consensus 187 ~~~~--------k~~~~d~~~---------w~~-----~~~g~~~~~~~wg~~~P~--------w~~~~~~~~~~----- 231 (464)
.... ...+..... |.. ...+.+.|...||.+.|. |+.+.......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (348)
T d2d5ba2 163 MEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPE 242 (348)
T ss_dssp GGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTT
T ss_pred hHhhhhhHHHhhhccccccccccccccccccccccccccccccccccCCCCcccccCCcccccchhccchhhhhhhcCCc
Confidence 0000 000000000 000 001122445578888884 54443222110
Q ss_pred ----hcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHH
Q 012397 232 ----YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRH 307 (464)
Q Consensus 232 ----~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~ 307 (464)
......+++++|.|+.++|...+.+...+.+..+++++++|+.++..+|+|||||+||+|++.|+++++|+|++||
T Consensus 243 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~G~KMSKS~Gn~i~~~ell~~~g~D~lR~ 322 (348)
T d2d5ba2 243 GEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRY 322 (348)
T ss_dssp CHHHHHHGGGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHH
T ss_pred hhhhccccchheeeehhhccchhhhhhhhhccccccCCCCEEEeCceEEcccCCCCcCCCCcccCHHHHHHHCCcHHHHH
Confidence 0112568999999999999999888887777778888988766666799999999999999999999999999999
Q ss_pred HHhhc-CCCCccCCCHHHHHHHHHH
Q 012397 308 FLISA-HYRSPLNYSVLQLDSASDA 331 (464)
Q Consensus 308 ~ll~~-~~~~~~~f~~~~~~~~~~~ 331 (464)
||++. ++++|++||++.+++..|+
T Consensus 323 ~l~~~~p~~~d~dFs~~~~~~~~n~ 347 (348)
T d2d5ba2 323 YLLREIPYGQDTPVSEEALRTRYEA 347 (348)
T ss_dssp HHHHHSCTTSCEECCHHHHHHHHHH
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHcC
Confidence 99985 8899999999999987764
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=2.1e-44 Score=359.52 Aligned_cols=292 Identities=14% Similarity=0.089 Sum_probs=216.1
Q ss_pred cceEEEeCCCCCCcCCcccch-hHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 39 KVGMYVCGVTAYDLSHLGHAR-AAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar-~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
|..|.+++|||||+|||||+| ++|.+|+++|++|++|++|.+++|+|++|++|+.+|.+.|++++++++.+...+.+++
T Consensus 3 ~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~~~ 82 (361)
T d1rqga2 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITF 82 (361)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 345666778999999999965 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCcc-hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------CCCCCCCCC-----cc---cccccc
Q 012397 118 ADLQCLPPTYQPRVS-DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------SPNYGRLSG-----QR---LENNRA 181 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s-~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------~~~~g~l~~-----~~---~~~~~~ 181 (464)
..+++.+++...+.+ ++...++.++..+.++|.+|+++.++++|+.+ |..||.... .. +..+..
T Consensus 83 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~f~~~~~~~~ 162 (361)
T d1rqga2 83 QRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDFAE 162 (361)
T ss_dssp HHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGTTTCCBCEEEEEEEEEECGGGTHH
T ss_pred cccccccccccccccchhhhhhhhhhhhccccCceeeeeeeeecccccceecccccccCCCcccccccceEEEecchhhh
Confidence 999998644433333 67788999999999999999999999998874 444543110 00 000000
Q ss_pred CCCcccCCcccCcccccc---ccc--ccCCCCcccCCCCCCCCchhhH--------------------------------
Q 012397 182 GERVAVDSRKRNPADFAL---WKA--AKAGEPSWDSPWGPGRPGWHIE-------------------------------- 224 (464)
Q Consensus 182 g~~~~~~~~k~~~~d~~~---w~~--~~~g~~~~~~~wg~~~P~w~~~-------------------------------- 224 (464)
............|..... |.. ..+..++++..||.++|.|...
T Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~d~~isr~~~wg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 242 (361)
T d1rqga2 163 RLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNE 242 (361)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTT
T ss_pred hhhhcccccccccchhhhhhhccccccccccccccccccccCccccccCCCeEEEeecccccccccccccCcccCCchhH
Confidence 000000000000100000 000 0122345677899888875311
Q ss_pred HHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccC----------CCCccEEEEeeeeeeCCcccccccCCccCHH
Q 012397 225 CSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ----------DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIR 294 (464)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~----------~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~ 294 (464)
+..+.....+.+.++|++|.|+.++|+.+++++..+.+. ..|..+ ++|||++++|+|||||+||+|+|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~p~~~-~~~g~l~~~G~KMSKSlGN~I~~~ 321 (361)
T d1rqga2 243 WKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDI-PANEYLTLEGKKFSTSRNWAIWVH 321 (361)
T ss_dssp THHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBC-CEECCEEETTEECBTTTTBSCBHH
T ss_pred HHHhhhhccCCcceEEeccccccccchhhHHHHHHHhhccccccccccCCCCCEE-EEeeeEEeCCEecCCCCCCCCCHH
Confidence 111111123457789999999999999999999888752 233444 667999999999999999999999
Q ss_pred HHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH
Q 012397 295 QITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA 331 (464)
Q Consensus 295 dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~ 331 (464)
|++++||+|+||||+++. +.++|++||++.+.+.+|.
T Consensus 322 d~i~~yg~D~lR~~l~~~~p~~~d~dfs~~~~~~~~n~ 359 (361)
T d1rqga2 322 EFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINE 359 (361)
T ss_dssp HHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHhhCCCCCCCCCCHHHHHHHhcc
Confidence 999999999999999986 8899999999999987663
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.2e-42 Score=357.10 Aligned_cols=291 Identities=17% Similarity=0.094 Sum_probs=205.3
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCCh------------HHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENP------------LSL 105 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~------------~~~ 105 (464)
++-.+..++|++||.||||||++++++|+++|++|++|++|+++.|+|+||.+|+.++.+.|..+ +++
T Consensus 48 ~~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~~~~G~D~~G~pie~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (450)
T d1ffya3 48 ETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEF 127 (450)
T ss_dssp CBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCccccccccccCCcHHHHHHHhhCCccccccHHHHhhhcchh
Confidence 34556667899999999999999999999999999999999999999999999999999887664 566
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCC-CCc--chhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------CCCCC
Q 012397 106 SNRYCQEYLVDMADLQCLPPTYQ-PRV--SDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYG 169 (464)
Q Consensus 106 ~~~~~~~~~~~l~~lgi~~~~~~-~r~--s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~~~~g 169 (464)
++.+.+.+.+.++++|++.+-.. .+| .+|.+.++++|.+|.++|++|++...++||+.| |.+|+
T Consensus 128 ~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~~f~~l~~~G~iy~~~~~v~~~p~~~~~~~~~e~~~~~~~r~~ 207 (450)
T d1ffya3 128 ALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYPHDWRTK 207 (450)
T ss_dssp HHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEETTTC
T ss_pred hhhhhhhHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHcCCeeccccccccccccCccccccccccccccccc
Confidence 88899999999999999863211 122 278899999999999999999999999998874 23333
Q ss_pred CCCC-----ccccccc-------c-CCCcccCCcccCcccccccc-cccCCCCcccCCCCCCCCchhhH-----------
Q 012397 170 RLSG-----QRLENNR-------A-GERVAVDSRKRNPADFALWK-AAKAGEPSWDSPWGPGRPGWHIE----------- 224 (464)
Q Consensus 170 ~l~~-----~~~~~~~-------~-g~~~~~~~~k~~~~d~~~w~-~~~~g~~~~~~~wg~~~P~w~~~----------- 224 (464)
.... .....+. + ...+........ .-+..|. ...+..++++..||.++|.|+..
T Consensus 208 ~~~~~~~~~qwf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dw~iSRqr~WG~piP~~~~~~~~~~~~~~~~ 286 (450)
T d1ffya3 208 KPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGK-TRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETV 286 (450)
T ss_dssp CBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHH-HHHHHHHHHCCCEECEESCSSSCBCCCEECTTSCEECCHHHH
T ss_pred CCceeeccccceeccccccccchhhcccccccccccc-eeeeccccCccchheeeecccccCcceeecCCCCEecchhhh
Confidence 2100 0000000 0 000000000000 0000010 01112234455677776654311
Q ss_pred ---------------------------------------------------HHHHHH-----hhcCCCeeEEEecccCcc
Q 012397 225 ---------------------------------------------------CSAMSA-----HYLSSKFDIHGGGIDLIF 248 (464)
Q Consensus 225 ---------------------------------------------------~~~~~~-----~~~~~~~~i~~~G~D~~~ 248 (464)
...... .....|.|++++|+|+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~wfds~~~~~~~~~~~~~~~~P~d~~~~G~Di~r 366 (450)
T d1ffya3 287 NHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYR 366 (450)
T ss_dssp HHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGT
T ss_pred HHHHHhhhhcCccccccccccccccccccccCCCCCcceeeeeeecccccccccccccccccccccCCCcccccCcchhh
Confidence 000000 001247899999999999
Q ss_pred ccchHHHHHHhhccC-CCCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHH
Q 012397 249 PHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLD 326 (464)
Q Consensus 249 ~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~ 326 (464)
+|+........++.+ .||.++++ ||||+. +|+|||||+||+|+|.|++++||+|++|||++++++++|++|+++.++
T Consensus 367 ~w~~~~~~~~~~~~~~~Pfk~v~~-hG~vld~~G~KMSKS~GN~I~p~dii~~yGaDalR~~l~s~~~~~D~~fs~~~l~ 445 (450)
T d1ffya3 367 GWFNSSITTSVATRGVSPYKFLLS-HGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILK 445 (450)
T ss_dssp THHHHHHHHHHHHHSSCSBSEEEE-ECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcceEEE-cceEECCCCCCCCCCCCCCcCHHHHHHHhCcHHHHHHHHcCCCCCCcCcCHHHHH
Confidence 876555555555544 57778766 599876 899999999999999999999999999999998889999999999998
Q ss_pred HHHH
Q 012397 327 SASD 330 (464)
Q Consensus 327 ~~~~ 330 (464)
+..+
T Consensus 446 ~~~~ 449 (450)
T d1ffya3 446 QTSD 449 (450)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 8765
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.9e-42 Score=352.41 Aligned_cols=287 Identities=16% Similarity=0.087 Sum_probs=198.4
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCC----------------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGEN---------------- 101 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~---------------- 101 (464)
++..|..++|+|||+|||||+|+++++|+++|++|++|++|+|++|+|+||++|+.+|++++..
T Consensus 38 ~~f~i~~~pPy~nG~lHiGH~~~~v~~Dv~~Ry~r~~G~~V~~v~G~D~hG~~i~~~a~~~~~~~~~~~~~~~~~~~~~~ 117 (452)
T d1ilea3 38 PRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQ 117 (452)
T ss_dssp CBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHH
T ss_pred CCEEEecCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCCceeccCCcCCCCHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 4566777799999999999999999999999999999999999999999999999999887643
Q ss_pred -hHHHHHHHHHHHHHHHHhcCCCCCC-CCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------
Q 012397 102 -PLSLSNRYCQEYLVDMADLQCLPPT-YQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------- 164 (464)
Q Consensus 102 -~~~~~~~~~~~~~~~l~~lgi~~~~-~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------- 164 (464)
+.+++..|.+.+.+.+..+|++.+. ...+|+ +|.+.++++|.+|.++|++|.+...++||+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (452)
T d1ilea3 118 ACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGY 197 (452)
T ss_dssp HHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTE
T ss_pred HHhhHHhhhhhhHHHHHhhhccccccchhhhcCChHHHHHHHHHHHHHHhcCCcccccccchhhcccccccccccccccC
Confidence 4667777888888899999997522 222333 78899999999999999999999999999875
Q ss_pred --CCCCCCCCCccccccccCCCc-ccCCc-----------ccCcc-----ccccccc-ccCCCCcccCCCCCCCCc----
Q 012397 165 --SPNYGRLSGQRLENNRAGERV-AVDSR-----------KRNPA-----DFALWKA-AKAGEPSWDSPWGPGRPG---- 220 (464)
Q Consensus 165 --~~~~g~l~~~~~~~~~~g~~~-~~~~~-----------k~~~~-----d~~~w~~-~~~g~~~~~~~wg~~~P~---- 220 (464)
|+.||.. ++....+..+ ..... ...|. ....|.. ..+..++++..||.+.|.
T Consensus 198 p~c~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~dw~IsR~~~wg~~ip~~~~~ 273 (452)
T d1ilea3 198 PHCWRCSTP----LMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQ 273 (452)
T ss_dssp EBCSSSCCB----CEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEES
T ss_pred CCccCcCCc----eEEeeccchhhhhccchhhhhhhhcccccCcchhhhceeeeeccCCccceeecccccccCCcccccc
Confidence 5555531 1000000000 00000 00000 0000100 011112333344444442
Q ss_pred -------------------------------------------------------hhhHHHHH-HH----------hhcC
Q 012397 221 -------------------------------------------------------WHIECSAM-SA----------HYLS 234 (464)
Q Consensus 221 -------------------------------------------------------w~~~~~~~-~~----------~~~~ 234 (464)
|+...... .. ....
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~w~~s~~~~~~~~~~~~~~~~~~~~~ 353 (452)
T d1ilea3 274 ACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRES 353 (452)
T ss_dssp SSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHH
T ss_pred ccCcccccchhhhhhhhhccccCccccccccccccccccccccccccccccccccccccccchhhhccCccchhhhcccC
Confidence 21111000 00 0001
Q ss_pred CCeeEEEeccc--CccccchHHHHHHhhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHhcCchhHHHHHhh
Q 012397 235 SKFDIHGGGID--LIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311 (464)
Q Consensus 235 ~~~~i~~~G~D--~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~ 311 (464)
.|.++++.|.| +.+||...+++.+. .+..+|.++++| ||++ .+|+|||||+||+|+|.|++++||+|++||||++
T Consensus 354 ~p~~~~~~g~d~~~~~fh~l~~~~~l~-~~~~~~~~v~~h-g~iL~~~G~KMSKS~gn~I~~~dll~~ygaD~lR~yl~~ 431 (452)
T d1ilea3 354 FPADFIAEGIDQTRGWFNSLHQLGVML-FGSIAFKNVICH-GLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYV 431 (452)
T ss_dssp SSBSBEEEEGGGGGTHHHHHHHHHHHH-HSSCSBSEEEEE-CCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHH
T ss_pred CcchhheecCceechhhHHHHHhHHHH-cCCCCCCeEEEe-eEEECCCCcccCCCCCCCcCHHHHHHHcCcHHHHHHHHh
Confidence 24455555555 45688888888775 445678888664 7875 6999999999999999999999999999999998
Q ss_pred c-CCCCccCCCHHHHHHHHH
Q 012397 312 A-HYRSPLNYSVLQLDSASD 330 (464)
Q Consensus 312 ~-~~~~~~~f~~~~~~~~~~ 330 (464)
. ++++|++|+++.+++.++
T Consensus 432 ~~~~~~d~~Fs~~~~~e~~~ 451 (452)
T d1ilea3 432 SAPPEADRRFGPNLVRETVR 451 (452)
T ss_dssp HSCSSSCEECCHHHHHHHHH
T ss_pred cCCCCCCCCcCHHHHhHHhc
Confidence 6 889999999999998765
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.1e-35 Score=301.70 Aligned_cols=127 Identities=15% Similarity=0.064 Sum_probs=114.9
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++..|..++|++||.||||||.+++++|+++|++|++|++|.|++|+|+||.+|+.++++.|..|+++++++...+.+.+
T Consensus 33 ~~~~i~~~pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G~~v~~~~G~D~~G~~~e~~~~k~~~~~~~~~~~~~~~~~~~~ 112 (494)
T d1h3na3 33 GKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESL 112 (494)
T ss_dssp CEEEEEECCCCSSSCCBHHHHHHHHHHHHHHHHHHHTTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCCCchhhhHHHHHHHHHHHHHHHHccCCcccCcCCcCcchHHHHHHHHHhCCChHHHHHHHHHHhHHHH
Confidence 44567777888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCC-CCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC
Q 012397 118 ADLQCLPPT-YQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK 164 (464)
Q Consensus 118 ~~lgi~~~~-~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~ 164 (464)
++||++.+- .+.+|. ++.+.++++|.+|+++|++|++...++||+.|
T Consensus 113 ~~~g~~~d~~~~~~T~d~~~~~~~~~~f~~l~~~g~iy~~~~~~~~~~~~ 162 (494)
T d1h3na3 113 RLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKC 162 (494)
T ss_dssp HHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTT
T ss_pred HhcCcccCCCCceecCCccccchHHHHHHHhhhCCcEEeeeEEEEeecCc
Confidence 999998631 233333 67889999999999999999999999998874
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.97 E-value=5.5e-33 Score=269.18 Aligned_cols=273 Identities=13% Similarity=0.059 Sum_probs=139.9
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCC----------------
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGE---------------- 100 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~---------------- 100 (464)
.+++.|+.|+|||||+|||||+|++++||++||+||++|++|.+++++||+|.++...+.....
T Consensus 16 ~k~~~v~~~~~~PnG~lHIGHlr~~i~gD~laR~lr~~G~~V~~~~~~dd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (317)
T d1irxa2 16 EKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPW 95 (317)
T ss_dssp CCSEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTT
T ss_pred CCCeEEEECCCCCCCCccccccHHHHHHHHHHHHHHHcCCCEEEEEEeccCcchhhhHHhhhhhHHHhccCccccccccc
Confidence 4666778899999999999999999999999999999999999999999999765332211100
Q ss_pred -ChHHHHHHHHHHHHHHHHhcCCCCCCCCCC-cchhHHHHHHHHHHHHHC-------CceEeecCcEEEcCCCCCCCCCC
Q 012397 101 -NPLSLSNRYCQEYLVDMADLQCLPPTYQPR-VSDHMEQIKDMITQIINN-------DCAYVVEGDVFFAVEKSPNYGRL 171 (464)
Q Consensus 101 -~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r-~s~~~~~~~~~~~~L~~~-------G~~y~~~~~~~~~~~~~~~~g~l 171 (464)
..............+....+++.. +.... .........+.......+ -..........+... .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 167 (317)
T d1irxa2 96 GCHESYAEHFMRKFEEEVEKLGIEV-DLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE-------N 167 (317)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTTCCC-EEEEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT-------T
T ss_pred ccccccchhhhhHHhhHHHHhcccc-chhhHHHHHHHHHHHHHHHHHHhhhhhhcccccceeeeeccccccc-------c
Confidence 111122222223333333333321 10000 000000000000000000 000000000000000 0
Q ss_pred CCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccc
Q 012397 172 SGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHH 251 (464)
Q Consensus 172 ~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~ 251 (464)
.. .........................|.............+|...+.|...+... +...++++++.|+|+..+|.
T Consensus 168 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~d~~~~~~ 243 (317)
T d1irxa2 168 WW-PAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMR---WSHFGVDFEPAGKDHLVAGS 243 (317)
T ss_dssp CC-SEEEECTTTCCEECEEEECSSSCEEECCSSSCCCEECTTSSCEEECHHHHHHHH---HHHSCCCBCCEEHHHHSTTS
T ss_pred cc-ccchhhhccccccccccccccccceeeecccccccccccccCCcccccccchhh---hccCceeEEEecceecccch
Confidence 00 000000000000000000000001111111111222335566666665544322 22336788999999999999
Q ss_pred hHHHHHHhhcc--CCCCccEEEEeeeeeeCCc--ccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCH
Q 012397 252 ENEIAQSCAAC--QDSNVSYWMHNGHVTNNNE--KMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSV 322 (464)
Q Consensus 252 ~~~~a~~~a~~--~~~~~~~~~~~~~v~~~G~--KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~ 322 (464)
.+++++..+.. +..++.+ +|++|++++|+ |||||+||+|+++|+++.+++|++||++|+..+.++++||.
T Consensus 244 ~~~~~~~~~~~~~g~~~~~~-~~~~~l~l~ge~~KMSkrkGn~I~~~dll~~~~~d~~Ry~~l~~~~~~~i~FDl 317 (317)
T d1irxa2 244 SYDTGKEIIKEVYGKEAPLS-LMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEIKIDL 317 (317)
T ss_dssp HHHHHHHHHHHHHCCCCCBC-CEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTSCEEECC
T ss_pred hhhHhhhhhhhhcCCCCcEE-EEEEEEEECCccccccCCCCccccHHHHHHHCCHHHHHHHhcCCCCCCCcCCCC
Confidence 88777654432 2333444 56799999664 99999999999999999999999999999998899999983
|
| >d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.2e-27 Score=231.84 Aligned_cols=247 Identities=15% Similarity=0.045 Sum_probs=175.2
Q ss_pred CCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHH------------------
Q 012397 35 IVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAN------------------ 96 (464)
Q Consensus 35 ~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~------------------ 96 (464)
..+++|.|..++|||+|||||||+|++++||+|+|+|+..|++|...++++|+|.+|..-+.
T Consensus 5 ~~~kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~ 84 (348)
T d1f7ua2 5 VENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHH 84 (348)
T ss_dssp SSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHH
T ss_pred CCCCEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHHHhccccccccccchh
Confidence 35689999999999999999999999999999999999999999999999999976532111
Q ss_pred -------------HcCC----------------------C------hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc-hh
Q 012397 97 -------------DLGE----------------------N------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVS-DH 134 (464)
Q Consensus 97 -------------~~g~----------------------~------~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s-~~ 134 (464)
+.+. + ++.+++.....+.+++++|||.+ |.+...+ -+
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~f-D~~~~Es~~~ 163 (348)
T d1f7ua2 85 LFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKY-DVYSGESQVS 163 (348)
T ss_dssp HHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-SEEEEGGGCC
T ss_pred HHHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhccccc
Confidence 0010 0 24566777788999999999986 5554444 44
Q ss_pred HHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCC
Q 012397 135 MEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPW 214 (464)
Q Consensus 135 ~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~w 214 (464)
.....+.+..|.++|++|+.++..|++...+ |. +.|-.++++ ++|
T Consensus 164 ~~~~~~v~~~L~~~~~~~~~~ga~~~~~~~~---g~-----------------------~~~~~vl~k-sDG-------- 208 (348)
T d1f7ua2 164 KESMLKAIDLFKEKGLTHEDKGAVLIDLTKF---NK-----------------------KLGKAIVQK-SDG-------- 208 (348)
T ss_dssp HHHHHHHHHHHHHTTCEEEETTEEEEEGGGT---CT-----------------------TTCEEEEEC-TTS--------
T ss_pred ccchHHHHHHHHhhccccccCCcccccchhh---cc-----------------------ccccceecc-CCC--------
Confidence 5556678899999999999999888864321 10 001112221 233
Q ss_pred CCCCCchhh-HHHHHHHhh--cCCCeeEEEecccCccccchHHH---HHHhhccCCCCccEEEEeeeeeeCCcccccccC
Q 012397 215 GPGRPGWHI-ECSAMSAHY--LSSKFDIHGGGIDLIFPHHENEI---AQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLG 288 (464)
Q Consensus 215 g~~~P~w~~-~~~~~~~~~--~~~~~~i~~~G~D~~~~h~~~~~---a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~g 288 (464)
.+.|+. .+++...++ ++....|.+.|.| |+.+.. +.+.+++. .+...+.|..+.++. |||||+|
T Consensus 209 ---~~tY~t~DiAy~~~K~~~~~~D~~I~V~g~d----q~~~~~~l~~~l~~lg~-~~~~~~~h~~~g~v~--kMStR~G 278 (348)
T d1f7ua2 209 ---TTLYLTRDVGAAMDRYEKYHFDKMIYVIASQ----QDLHAAQFFEILKQMGF-EWAKDLQHVNFGMVQ--GMSTRKG 278 (348)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHCCSEEEEECCGG----GHHHHHHHHHHHHHTTC-GGGGGEEEECCCCEE--SCCGGGT
T ss_pred ---ccceecchHHhhhhhhhccCCCEEEEecccc----cchhhhhHHHHHHHhCC-CcccceeeecCCccc--cccccCC
Confidence 333332 233333332 3446678889999 653322 22233443 334444666665553 8999999
Q ss_pred CccCHHHHHHh----------------------------cCchhHHHHHhhcCCCCccCCCHHHHHH
Q 012397 289 NFFTIRQITER----------------------------YHPLALRHFLISAHYRSPLNYSVLQLDS 327 (464)
Q Consensus 289 n~i~~~dll~~----------------------------~~~dalR~~ll~~~~~~~~~f~~~~~~~ 327 (464)
|+|+++||+++ +|.+|+||++++.++.+++.|||+.+.+
T Consensus 279 ~~i~l~dll~e~~~~a~~~~~~~~~~~~~~~~~~~ia~~vgv~ai~y~~L~~~~~~~~~Fd~d~~l~ 345 (348)
T d1f7ua2 279 TVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLS 345 (348)
T ss_dssp CCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHC
T ss_pred CceEHHHHHHHHHHHHHHHHHhccCcCCChhhHHHHHHHhhHHheehhhhhcCCCCCCEECHHHhcC
Confidence 99999999975 7889999999999999999999999864
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=7.9e-28 Score=239.73 Aligned_cols=284 Identities=15% Similarity=0.089 Sum_probs=161.5
Q ss_pred cCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHH---HHHcCC----------
Q 012397 34 PIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRR---ANDLGE---------- 100 (464)
Q Consensus 34 ~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~---a~~~g~---------- 100 (464)
|..+++|.|..++|||+|||||||+|++++||+|+|+|++.|++|...++++|+|.++..- .+..+.
T Consensus 3 p~~~~~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~~~~~~~ 82 (370)
T d1iq0a2 3 PRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDH 82 (370)
T ss_dssp CCEEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHH
T ss_pred CCCCCeEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHcCCEEEEEEeECCchHHHHHHHHHHHHhccccccccchhh
Confidence 4567899999999999999999999999999999999999999999999999999765321 122111
Q ss_pred --------------------------------ChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchh--HHHHHHHHHHHH
Q 012397 101 --------------------------------NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDH--MEQIKDMITQII 146 (464)
Q Consensus 101 --------------------------------~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~--~~~~~~~~~~L~ 146 (464)
+.++..+.....+.+++..+|+.+ |.+...++. ...+.+++..|.
T Consensus 83 ~~~~~y~~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~f-D~~~~Es~l~~~~~~~~~i~~l~ 161 (370)
T d1iq0a2 83 FAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARY-DLLVWESDIVRAGLLQKALALLE 161 (370)
T ss_dssp HHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCC-SEEEEHHHHHHTTHHHHHHHHHT
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccceee-ceeeeecccccccchhhhHhhhh
Confidence 112333445555667777888875 555544432 234667777777
Q ss_pred HCCceEeec-----CcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCccccc--ccccccCCCCcccCCCCCCCC
Q 012397 147 NNDCAYVVE-----GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA--LWKAAKAGEPSWDSPWGPGRP 219 (464)
Q Consensus 147 ~~G~~y~~~-----~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~--~w~~~~~g~~~~~~~wg~~~P 219 (464)
++|.+|+.. +..+.+.......+...+..+. -.+|... |- ..|.+ +||......+.+...++.-.+
T Consensus 162 ~~~~~~~~~~~~~~ga~~~d~~~~~~~~~~~~~vl~-ksDG~~t----Y~--t~DiAy~~~K~~~~~~~~~~~~~~~~~~ 234 (370)
T d1iq0a2 162 QSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLL-RSNGTAT----YY--AKDIAFQFWKMGILEGLRFRPYENPYYP 234 (370)
T ss_dssp TSTTEECCSSSTTTTCEEEECTTTSCSCSCCEEEEE-CTTSCBC----HH--HHHHHHHHHHTTSSCCCEEEECCCSSCT
T ss_pred hccceeeccccccceEEEecCccccccccCcceeeE-eccCCce----Ee--ccHHHHHhhhcccccccceeccccCccc
Confidence 888877543 3344433321111100000000 0011110 00 01221 122111110111111111111
Q ss_pred chhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHH-HhhccCCCCc-c-EEEEeeeeeeCCcccccccCCccCHHHH
Q 012397 220 GWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ-SCAACQDSNV-S-YWMHNGHVTNNNEKMSKSLGNFFTIRQI 296 (464)
Q Consensus 220 ~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~-~~a~~~~~~~-~-~~~~~~~v~~~G~KmSks~gn~i~~~dl 296 (464)
.+.+.++.......+....+++.+.++. ||...+.. +.+++..... + ..+..|+|..+|+|||||+||+|+++||
T Consensus 235 ~i~i~~~d~~~~~~~~d~~iyVvd~~Q~--~h~~~v~~~~~~~g~~~~~~~~~hv~~g~v~~~g~kMStR~G~~v~l~dl 312 (370)
T d1iq0a2 235 GLRTSAPEGEAYTPKAEETINVVDVRQS--HPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEV 312 (370)
T ss_dssp TCEEEEEEEEECCCCCSEEEEEEESSSC--CCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHH
T ss_pred eeEeeccccccchhhhhHHHHHHhccch--HHHHHHHHHHHHhCCCchhhceeeEEEEEEecCCccccccCCCeeEHHHH
Confidence 1100000000000122455777766654 66444333 3334432211 1 1234577888999999999999999999
Q ss_pred HHh-------------------------cCchhHHHHHhhcCCCCccCCCHHHHHH
Q 012397 297 TER-------------------------YHPLALRHFLISAHYRSPLNYSVLQLDS 327 (464)
Q Consensus 297 l~~-------------------------~~~dalR~~ll~~~~~~~~~f~~~~~~~ 327 (464)
+++ +|.+|+||++|+.++.+++.||++.+.+
T Consensus 313 l~ea~~~a~~~~~~r~~~~~~~~~~a~~vgi~avky~~L~~~~~~~~~Fd~d~~ls 368 (370)
T d1iq0a2 313 LEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALS 368 (370)
T ss_dssp HHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHC
T ss_pred HHHHHHHHHHHHHhhCCCchhHHHHHHHhhhhheehhHhhcCCCCCceECHHHhcc
Confidence 986 8999999999999999999999999864
|
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=3.1e-19 Score=172.22 Aligned_cols=246 Identities=15% Similarity=0.128 Sum_probs=146.5
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|+|+|||||||++++.+.+|| ...|. ++.-+||.+.. + ....|.+.|.++|++||+.++
T Consensus 7 aPsPtG~lHiG~~rtal~n~~~Ak--~~~G~---~iLRidDtD~~---R----------~~~~~~~~I~~dL~wLgi~wD 68 (305)
T d1j09a2 7 APSPTGDPHVGTAYIALFNYAWAR--RNGGR---FIVRIEDTDRA---R----------YVPGAEERILAALKWLGLSYD 68 (305)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHH--HTTCE---EEECBCCCCTT---S----------CCTTHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCE---EEEEeCcCCCc---c----------CchHHHHHHHHHHHHHhcCcc
Confidence 689999999999999999999999 55664 55556666531 1 122488899999999999963
Q ss_pred C--------CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-----------CCC-CCCCCCcccccc-ccCCC
Q 012397 126 T--------YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-----------SPN-YGRLSGQRLENN-RAGER 184 (464)
Q Consensus 126 ~--------~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-----------~~~-~g~l~~~~~~~~-~~g~~ 184 (464)
. ...++|++.+.+++.+.+|+++|++|. ++|... |+. |..+......+. ..|..
T Consensus 69 ~~p~~~~~~~~~~qS~r~~~y~~~~~~Li~~g~aY~-----C~cs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (305)
T d1j09a2 69 EGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR-----AFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEP 143 (305)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE-----ECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCC
T ss_pred cCCcCCCCCcceeeecchhHHHHHHHHHHHcCCeee-----ccccchhhhhhhhhccCCCCccccchhhhHHHHhhcCCc
Confidence 2 245788999999999999999999994 333321 111 111111111100 01110
Q ss_pred ----cccCCcccC-cccc----cccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHH-
Q 012397 185 ----VAVDSRKRN-PADF----ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENE- 254 (464)
Q Consensus 185 ----~~~~~~k~~-~~d~----~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~- 254 (464)
+........ ..|. ..+.....|.. ...-..+.|+|+.++... .... .++..+-|.| |....
T Consensus 144 ~~~R~k~~~~~~~~~~d~i~~~~~~~~~~~~D~--vi~r~dg~p~Y~~A~vvD-D~~~--githviRG~D----l~~~t~ 214 (305)
T d1j09a2 144 HVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDV--VLLKSDGYPTYHLANVVD-DHLM--GVTDVIRAEE----WLVSTP 214 (305)
T ss_dssp CEEEECCCSSCEEEEEETTTEEEEEEGGGSCCC--EEECTTSCBCHHHHHHHH-HHHT--TCCEEEEEGG----GGGGHH
T ss_pred ceEEEeccccCCccccchhhceeeeccccCCCe--EEECCCCCeehHHHHHHH-HHHc--cCcccccccc----ceeccH
Confidence 000000000 0000 00000001111 001235789999887432 2223 3667777889 44333
Q ss_pred --HHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHh-cCchhHHHHHhhcC--C-CCccCCCHHHHH
Q 012397 255 --IAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAH--Y-RSPLNYSVLQLD 326 (464)
Q Consensus 255 --~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~--~-~~~~~f~~~~~~ 326 (464)
..+..+++.+ ++.+ .|+..++. +|+|||||+|. .+++++.+. |.|+|||.|++... . ...-.++.+++.
T Consensus 215 ~q~~l~~~Lg~~-~p~~-~h~~l~~~~~g~KLSKr~~~-~tl~~lr~~G~~peai~~~l~~lG~~~~~~~~~~sl~e~i 290 (305)
T d1j09a2 215 IHVLLYRAFGWE-APRF-YHMPLLRNPDKTKISKRKSH-TSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFI 290 (305)
T ss_dssp HHHHHHHHHTCC-CCEE-EEECCCBCTTSCBCCTTTSC-CBHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHHH
T ss_pred HHHHHHHhhcCC-CCce-eeecccccCccccccccCCc-cCHHHHHHcCCCHHHHHHHHHHhCCCCCCCcCcCCHHHHH
Confidence 3334455544 3444 45555554 99999999987 799999875 99999999888642 2 223357877654
|
| >d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-Q tRNA-Asp synthetase YadB species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=2.7e-16 Score=149.96 Aligned_cols=231 Identities=14% Similarity=0.048 Sum_probs=125.0
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|+|||||||++++...+|| +..|.=++.+.-|| . .|. ..+|.+.|.++|++||+.++
T Consensus 8 APsPtG~lHiG~~rtal~n~~~Ak--~~~G~~iLRieDtD---~---~R~----------~~~~~~~I~~dL~wlgl~~d 69 (286)
T d1nzja_ 8 APSPSGELHFGSLIAALGSYLQAR--ARQGRWLVRIEDID---P---PRE----------VPGAAETILRQLEHYGLHWD 69 (286)
T ss_dssp CCCTTSCCCHHHHHHHHHHHHHHH--HTTCEEEEEECCSC---G---GGS----------CTTHHHHHHHHHHHTTCCCS
T ss_pred CcCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCCCC---C---CcC----------CHHHHHHHHHHHHHhhhccc
Confidence 588999999999999999999999 66776666655555 2 121 12488999999999999976
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------CC-CCCCCCCc-cccccc---cCCCccc-CC--
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------SP-NYGRLSGQ-RLENNR---AGERVAV-DS-- 189 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------~~-~~g~l~~~-~~~~~~---~g~~~~~-~~-- 189 (464)
....++|++.+.+++++++|+++|.+| .|+|... .+ .|..+... ...... ....... ..
T Consensus 70 ~~~~~QS~r~~~Y~~~~~~L~~~g~aY-----~C~ct~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 144 (286)
T d1nzja_ 70 GDVLWQSQRHDAYREALAWLHEQGLSY-----YCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLR 144 (286)
T ss_dssp SCCEEGGGCHHHHHHHHHHHHHTTCEE-----EECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTT
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCcc-----cccccHHHHHhhccccccccccccchhhhhhhhhcccccccceeeeee
Confidence 567788999999999999999999999 4444331 00 01000000 000000 0000000 00
Q ss_pred ------cccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHH---Hhh
Q 012397 190 ------RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ---SCA 260 (464)
Q Consensus 190 ------~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~---~~a 260 (464)
......||.++ ...+.|+|+.++... ....| ++-.+-|.| |..+.+.+ ..+
T Consensus 145 ~~~~~~~~~~~~D~vi~-------------R~dg~ptY~lA~vVD-D~~~g--IThViRG~D----~l~st~~Q~~L~~~ 204 (286)
T d1nzja_ 145 GIIHADEKLAREDFIIH-------------RRDGLFAYNLAVVVD-DHFQG--VTEIVRGAD----LIEPTVRQISLYQL 204 (286)
T ss_dssp EEEECCHHHHHSCCEEE-------------CTTSCBCHHHHHHHH-HHHTT--CCEEEEEGG----GHHHHHHHHHHHHH
T ss_pred eeeeecccccccccccc-------------CCCCCeeeeehhhhc-ccccc--cceeccccc----ccchHHHHHHHHHh
Confidence 00001233333 345788898775321 22243 566666889 65544433 345
Q ss_pred ccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc---CCCCccCCCHHHH
Q 012397 261 ACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA---HYRSPLNYSVLQL 325 (464)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~---~~~~~~~f~~~~~ 325 (464)
++.++| . +.|++.++. +|+|||||.+-. .++ +.+...++.-+|... +....-.|+.+++
T Consensus 205 lg~~~P-~-y~H~pli~~~~g~KLSKr~~~~-~i~---~~~~~~~~~~~L~~lG~~~~~~~~~~s~~e~ 267 (286)
T d1nzja_ 205 FGWKVP-D-YIHLPLALNPQGAKLSKQNHAP-ALP---KGDPRPVLIAALQFLGQQAEAHWQDFSVEQI 267 (286)
T ss_dssp HTCCCC-E-EEEECBCCC--------------CCC---SSCCHHHHHHHHHHTTCCCCSCGGGSCHHHH
T ss_pred hCCCcc-c-eeecceEEccCCcccccccCcc-chh---cCCccHHHHHHHHHhCCCCccccccCCHHHH
Confidence 555443 3 478887765 899999998752 222 123344444344332 2222345776664
|
| >d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutaminyl-tRNA synthetase (GlnRS) species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=2.3e-15 Score=146.14 Aligned_cols=251 Identities=14% Similarity=0.044 Sum_probs=146.5
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|+|||||+|++++...+|| +..|.=++.|--||- ......+.+.|.++|++|||.++
T Consensus 25 APSPTG~LHiG~~rtal~n~l~Ak--~~~G~fiLRIEDtD~----------------~R~~~~~~~~I~~dL~WLGl~wD 86 (331)
T d1gtra2 25 PPEPNGYLHIGHAKSICLNFGIAQ--DYKGQCNLRFDDTNP----------------VKEDIEYVESIKNDVEWLGFHWS 86 (331)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCCG----------------GGCCHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC----------------CcccchHHHHHHHHHHHHhcccc
Confidence 488999999999999999999999 667877777776661 22234588999999999999985
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------C------CCCCCC----CCccccccccC-----
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------S------PNYGRL----SGQRLENNRAG----- 182 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------~------~~~g~l----~~~~~~~~~~g----- 182 (464)
....++|++.+.+++.+.+|+++|++| .|||..+ + +.|... +.........+
T Consensus 87 ~~~~~QS~r~~~Y~~~~~~L~~~G~aY-----~C~cs~eel~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (331)
T d1gtra2 87 GNVRYSSDYFDQLHAYAIELINKGLAY-----VDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEG 161 (331)
T ss_dssp SSCEEGGGGHHHHHHHHHHHHHTTSEE-----EECCCHHHHHHHTCCSSSCCCCCTTTTCCHHHHHHHHHHHHHTCSCTT
T ss_pred ccceecchHHHHHHHHHHhhhhcCCcc-----cccccHHHHHHHHhhhhccCCCCCCCCccccccHHHhhHHhhccccCC
Confidence 566678999999999999999999999 5666521 1 111100 00000000011
Q ss_pred CCc---ccCCcccC--cccccccccc-cCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHH
Q 012397 183 ERV---AVDSRKRN--PADFALWKAA-KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256 (464)
Q Consensus 183 ~~~---~~~~~k~~--~~d~~~w~~~-~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a 256 (464)
..+ .......+ -.|+...... ..+. ....-.++.|+|+.++... .... .++-.+-|.| |..+.+.
T Consensus 162 ~~~~r~~~~~~~~~~~~~d~~~~~~~~~~~d--~v~~r~dg~ptY~lA~vVD-D~~~--gIThViRG~D----~l~~T~~ 232 (331)
T d1gtra2 162 KACLRAKIDMASPFIVMRDPVLYRIKFAEHH--QTGNKWCIYPMYDFTHCIS-DALE--GITHSLCTLE----FQDNRRL 232 (331)
T ss_dssp SCEEEECSCTTCSSGGGSSCEEEEECCCCBT--TTBTSCSEEECHHHHHHHH-HHHH--TCSEEEEEGG----GTTTHHH
T ss_pred ceEEEEecccCCCceeEEccceeeeccCCCc--ccccccccccHHhhhHHHh-hhhh--cccceecccc----cccccHH
Confidence 000 00000000 0111111000 0000 0112235667888764221 1223 3566666889 5444433
Q ss_pred ---HHhhccCCCCccEEEEeeeeeeCCcccccccCC---------------ccCHHHHHH-hcCchhHHHHHhhcCCC-C
Q 012397 257 ---QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITE-RYHPLALRHFLISAHYR-S 316 (464)
Q Consensus 257 ---~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn---------------~i~~~dll~-~~~~dalR~~ll~~~~~-~ 316 (464)
+..+++.+.|+.. .|...+..+|.||||+++. ..++.++.+ .|.|+|++=|++...+. .
T Consensus 233 q~~l~~~Lg~~~p~~~-h~~~~l~~~g~~lskr~l~~~~~~~~~~~~dd~~~~sl~~lr~~G~~peai~nyla~LGws~~ 311 (331)
T d1gtra2 233 YDWVLDNITIPVHPRQ-YEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQ 311 (331)
T ss_dssp HHHHHHHSCCSCCCEE-EEECCCCBTTSCCCHHHHHHHHHTTSSSSTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSS
T ss_pred HHHHHHhccCCCCcce-eeccccccccchhhhcccchhcccCccccccCCCcccHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 3345555544433 2233445599999998532 346777776 49999999999876443 2
Q ss_pred ccCCCHHHHHHHH
Q 012397 317 PLNYSVLQLDSAS 329 (464)
Q Consensus 317 ~~~f~~~~~~~~~ 329 (464)
+...++..+.+..
T Consensus 312 d~~~e~~sLe~~~ 324 (331)
T d1gtra2 312 DNTIEMASLESCI 324 (331)
T ss_dssp CCCBCHHHHHHHH
T ss_pred CCcccHHhHHHHH
Confidence 3344555555443
|
| >d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=4.1e-12 Score=104.91 Aligned_cols=106 Identities=8% Similarity=0.044 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcCccccCC------C-----ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHH
Q 012397 333 FYIYQTLQDCEVALSPFQEHG------K-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 401 (464)
Q Consensus 333 ~~l~~~~~~~~~~l~~~~~~~------~-----~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~ 401 (464)
.|+||+++|++++++++.... . .++.++.|+..+.+++..+.++. +++. |+.++.|++++++.||+|
T Consensus 4 pYiqYa~aRi~SIlrk~~~~~~~~~~~~~~~~l~~~~e~~Li~~l~~~p~vl~~a~-~~~~-Ph~l~~yl~~La~~F~~f 81 (124)
T d1f7ua1 4 PYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAI-KTHE-PTTVVTYLFKLTHQVSSC 81 (124)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHH-HHCC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCChhhhccccccccCCHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHH
Confidence 489999999999997764211 0 13455778999999999999999 7776 777788899999999999
Q ss_pred hhhhcccCch-hhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 402 LNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 402 ~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
|+.+++.... +....|+.++.++..+|++++.+|||.|+
T Consensus 82 Y~~~~Il~~~~~~~~~RL~L~~~~~~vL~~gL~lLGI~~~ 121 (124)
T d1f7ua1 82 YDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPV 121 (124)
T ss_dssp HHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Confidence 9999987643 34568999999999999999999999887
|
| >d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.27 E-value=1e-12 Score=112.78 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccC
Q 012397 330 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 409 (464)
Q Consensus 330 ~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~ 409 (464)
|.+|||.+|+. +.+.++.++..+.+.+...+..+.++.+++.++| ++++++.|+.. ++++++.+|+|++..+||+
T Consensus 3 N~lGNlv~R~~---~~~~k~~~g~vP~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~al~~-i~~~~~~~N~yi~~~~PW~ 77 (152)
T d2d5ba1 3 DDLGNLVQRTR---AMLFRFAEGRIPEPVAGEELAEGTGLAGRLRPLV-RELKFHVALEE-AMAYVKALNRYINEKKPWE 77 (152)
T ss_dssp CCCHHHHHHHH---HHHHHHSTTBCCCCCCCGGGGGGGGHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHH---HHHHHHCCCcCCCCcchHHHHHHHHHHHHHHHHH-HHHHhHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34677777654 2333333333333344445667788899999999 99999999999 9999999999999999998
Q ss_pred chhhhhhH-HHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhc
Q 012397 410 PKQQQLSL-IESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFF 458 (464)
Q Consensus 410 ~~~~~~~r-~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~ 458 (464)
..+++..+ ..++..+.++++.+..+|. |+|. ++++||++|+..-.++.
T Consensus 78 l~k~d~~~~~~vl~~~l~~lr~l~ilL~P~mP~-~~~ki~~~Lg~~~~~~~ 127 (152)
T d2d5ba1 78 LFKKEPEEARAVLYRVVEGLRIASILLTPAMPD-KMAELRRALGLKEEVRL 127 (152)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHTTCCSSCCG
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHhHhhH-HHHHHHHHcCCCccCCH
Confidence 65544334 3457889999999999999 9999 99999999997654443
|
| >d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.24 E-value=1.2e-11 Score=102.28 Aligned_cols=106 Identities=13% Similarity=0.155 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhcCccccCCC-----ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcc
Q 012397 333 FYIYQTLQDCEVALSPFQEHGK-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKK 407 (464)
Q Consensus 333 ~~l~~~~~~~~~~l~~~~~~~~-----~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~ 407 (464)
.|+||+++|++++++++..... .++.|+.|+..+.++++.+.++. +++. |+.++.|++++++.||+||+.++.
T Consensus 5 pYiqYa~AR~~SIl~k~~~~~~~~~~~~~~~E~~Li~~l~~~p~vl~~a~-~~~~-Ph~l~~yl~~La~~F~~fY~~~~~ 82 (126)
T d1iq0a1 5 PYVQYAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAA-EERT-PHVLAQYLLDLAASWNAYYNAREN 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHH-HHTC-HHHHHHHHHHHHHHHHHHHHCEET
T ss_pred HHHHHHHHHHHHHHHhccccCCcccccCCHHHHHHHHHHHHHHHHHHHHH-HHHh-hHHHHHHHHHHHHHHHHHHHhccc
Confidence 4899999999999988753211 24456889999999999999999 7775 777788899999999999987664
Q ss_pred c-------Cc-hhhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 408 K-------QP-KQQQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 408 ~-------~~-~~~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
. .. ......|+.++.++..+|++++.+|||.|+
T Consensus 83 ~~~~~~i~~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~~~ 123 (126)
T d1iq0a1 83 GQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGIPAP 123 (126)
T ss_dssp TEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Confidence 2 21 233578999999999999999999999987
|
| >d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.23 E-value=5.5e-12 Score=114.23 Aligned_cols=122 Identities=11% Similarity=0.053 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHH-HHHhcCcccc-CCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcc
Q 012397 330 DAVFYIYQTLQD-CEVALSPFQE-HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKK 407 (464)
Q Consensus 330 ~~l~~l~~~~~~-~~~~l~~~~~-~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~ 407 (464)
|++|||.+|+.. +.......-+ ....++.|++++..+.++.+++.++| ++++++.|+.. ++++++.+|+|++..+|
T Consensus 2 N~lGNl~~Rv~~~i~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~-i~~l~~~~N~yi~~~~P 79 (210)
T d1rqga1 2 NNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYRFKDALKR-VMSLASFGNRYFDHKQP 79 (210)
T ss_dssp TTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 568888887542 2233222111 12234567899999999999999999 99999999999 99999999999999999
Q ss_pred cCchhhh-hhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhH
Q 012397 408 KQPKQQQ-LSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLL 454 (464)
Q Consensus 408 ~~~~~~~-~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~ 454 (464)
|...+++ +....++..+.++++.++.+|. |+|+ +|++||++|+...
T Consensus 80 W~l~k~~~~~~~~vl~~~~~~~~~l~ilL~PfmP~-~a~~i~~~Lg~~~ 127 (210)
T d1rqga1 80 WKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPD-ASEKIWHLLNLDE 127 (210)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHTTCCS
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHcCCCc
Confidence 9865433 4455667999999999999999 9999 9999999998653
|
| >d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=2.4e-11 Score=105.22 Aligned_cols=115 Identities=7% Similarity=-0.046 Sum_probs=94.0
Q ss_pred HHHHHHHHhcCccccCCCc-cCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhh--
Q 012397 337 QTLQDCEVALSPFQEHGKT-ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ-- 413 (464)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~-~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~-- 413 (464)
|.+.|+.+.+.++.++..+ ...|.+++..+.++...+.++| +++++++|+.. ++++++.+|+|++..+||+..+.
T Consensus 3 NL~~R~~~~i~k~~~g~vp~~~~d~~l~~~~~~~~~~~~~~~-~~~~~~~al~~-i~~~~~~~Nkyi~~~~PWkl~k~~~ 80 (162)
T d1pfva1 3 NLASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAW-ESREFGKAVRE-IMALADLANRYVDEQAPWVVAKQEG 80 (162)
T ss_dssp HHHHHHHHHHHHHSTTBCCSSCSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTSTT
T ss_pred chHHHHHHHHHHhcCCcCCCCCCCHHHHHHHHHHHHHHHHHH-HHHhHHHHHHH-HHHHHHHHHHHHHHHhhhhhcccch
Confidence 4445555655555544332 4568899999999999999999 99999999999 99999999999999999975432
Q ss_pred hhhH-HHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhH
Q 012397 414 QLSL-IESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLL 454 (464)
Q Consensus 414 ~~~r-~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~ 454 (464)
+.++ ...+..+.++++.+..+|. |+|. +|++||++|+...
T Consensus 81 ~~~~~~~vl~~~~~~lr~~~~lL~P~mP~-~s~ki~~~L~~~~ 122 (162)
T d1pfva1 81 RDADLQAICSMGINLFRVLMTYLKPVLPK-LTERAEAFLNTEL 122 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTTCHH-HHHHHHHHHTSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHhCCCC
Confidence 2334 4567999999999999999 9998 9999999999653
|
| >d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.09 E-value=9e-11 Score=106.64 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhcCccccC-CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH--HHHHHhhhhcccC
Q 012397 333 FYIYQTLQDCEVALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKKQ 409 (464)
Q Consensus 333 ~~l~~~~~~~~~~l~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~--~~n~~~~~~~~~~ 409 (464)
.++||+.+++.....++... ...+..|+|++.+++++...++++| ++|+++.|+.. +++|+. .++.|++..+...
T Consensus 2 NKlwNa~rF~~~~~~~~~~~~~~~~~~Dkwil~~l~~~i~~v~~~~-~~y~f~~a~~~-l~~F~~~~l~d~Y~e~~k~~~ 79 (218)
T d1ivsa2 2 NKLYNAARFVLLSREGFQAKEDTPTLADRFMRSRLSRGVEEITALY-EALDLAQAARE-VYELVWSEFCDWYLEAAKPAL 79 (218)
T ss_dssp HHHHHHHHHHHHHSSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHTTTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HhhhhhhHHHH-HHHHhhhhhHHHHHHHHhhhc
Confidence 47899998887776655332 1234468999999999999999999 99999999999 999984 4588888776521
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 410 PKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 410 ~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
. ........++..+++.++.+|+ |+|+ +||+||+.|..--++++..||
T Consensus 80 ~----~~~~~~~~~l~~~l~~~l~ll~P~~Pf-itEeiw~~l~~~~si~~~~wP 128 (218)
T d1ivsa2 80 K----AGNAHTLRTLEEVLAVLLKLLHPMMPF-LTSELYQALTGKEELALEAWP 128 (218)
T ss_dssp H----TTBHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHHHCCSCGGGSCCC
T ss_pred c----cccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHhcccccccccccCC
Confidence 1 1122345677889999999999 9998 999999999877788888888
|
| >d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=99.05 E-value=7.9e-11 Score=110.83 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhcCccccC------CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH--HHHHHhhh
Q 012397 333 FYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNM 404 (464)
Q Consensus 333 ~~l~~~~~~~~~~l~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~--~~n~~~~~ 404 (464)
.+++|+++++.+.+.++.+. ......|+|++.+++++.+++.++| ++|+++.|+.. |++|+. ..+.|++.
T Consensus 2 RKirNt~RFlL~nl~~f~~~~~~~~~~~l~~lD~wiL~~l~~~~~~v~~~y-~~y~f~~~~~~-l~~F~~~~ls~~Y~~~ 79 (273)
T d1ffya1 2 RKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNY-ENFDYLNIYQE-VQNFINVELSNFYLDY 79 (273)
T ss_dssp HHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHCCCCCCHHHH
T ss_pred chHHHHHHHHHHhccCCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHH-HhccccchHHH-HHhhhhccchHHHHhh
Confidence 57899999998888776421 1124579999999999999999999 99999999999 999996 35888888
Q ss_pred hcc--cCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh--HhHhcCCCC
Q 012397 405 LKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL--LHVFFDDSP 462 (464)
Q Consensus 405 ~~~--~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~--~~~~~~~~~ 462 (464)
.|. |.+..+...|.....++.+++..++.+|+ |+|+ +||+||+.+..- .+++...+|
T Consensus 80 ~Kdrly~~~~ds~~r~~~~~~l~~il~~l~~~laPilPf-~~Eei~~~~~~~~~~sv~~~~~p 141 (273)
T d1ffya1 80 GKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVH-TAEEVWSHTPHVKEESVHLADMP 141 (273)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHTTSTTCSSSSGGGSCCC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccccchhhhcccc
Confidence 876 66555667788888999999999999999 9998 999999988542 366666665
|
| >d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.05 E-value=1.9e-10 Score=101.16 Aligned_cols=127 Identities=7% Similarity=0.029 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhc--CccccC-----CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH-H-HHHHh
Q 012397 332 VFYIYQTLQDCEVAL--SPFQEH-----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK-F-INSSL 402 (464)
Q Consensus 332 l~~l~~~~~~~~~~l--~~~~~~-----~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~-~-~n~~~ 402 (464)
..+|||+++++.... .+.... ...+..|+|++.+++++.+++.++| ++|++.+|+.. +++++. . ++.|+
T Consensus 2 ~~klWN~~rF~~~~~~~~~~~~~~~~~~~~l~~~D~wil~~l~~~~~~v~~~~-~~~~f~~a~~~-l~~f~~~~l~~~Y~ 79 (180)
T d1ilea1 2 FLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEAL-EAYDPTTSARA-LRDFVVEDLSQWYV 79 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHSSTTTH
T ss_pred CcHHHHHHHHHHHhccccCCCccCCCChhhCCHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHH-HHHHhHhhhhHHHH
Confidence 457889888765432 222111 1124478999999999999999999 99999999999 999865 3 46667
Q ss_pred hhhcc--cCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh------HhHhcCCCC
Q 012397 403 NMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL------LHVFFDDSP 462 (464)
Q Consensus 403 ~~~~~--~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~------~~~~~~~~~ 462 (464)
+..++ +. ....+.|.....++.+++..++.+|+ |+|+ +||+||+.|... .++++..||
T Consensus 80 e~~K~~l~~-~~~~~~~~~~~~~l~~il~~~l~llaP~~Pf-itEEiw~~l~~~~~~~~~~sv~~~~wP 146 (180)
T d1ilea1 80 RRNRRRFWK-NEDALDREAAYATLYEALVLVATLAAPFTPF-LAEVLWQNLVRSVRLEAKESVHLADWP 146 (180)
T ss_dssp HHHHHHHHT-CTTTSSTTHHHHHHHHHHHHHHHHHTTTSTT-HHHHHHHHHTTTTSTTSCSSGGGSCCC
T ss_pred Hhccchhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccccccchHHHHhCC
Confidence 66654 33 22344566777899999999999999 9999 999999999553 357778887
|
| >d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.99 E-value=3.4e-10 Score=93.74 Aligned_cols=90 Identities=10% Similarity=0.069 Sum_probs=75.4
Q ss_pred cCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhh
Q 012397 356 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 435 (464)
Q Consensus 356 ~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lL 435 (464)
+..|+|++.++++++.+|++++ ++|+++.|++. +++|++.++++......+ ....++++.++.+|
T Consensus 29 ~~~dk~~~~~l~~~i~~v~~~~-e~~~fn~ai~~-l~~f~n~l~~~~~~~~~~-------------~~~~~~l~~ll~ll 93 (128)
T d1h3na1 29 EGKDRELYGKLHETLKKVTEDL-EALRFNTAIAA-LMEFLNALYEYRKDRPVT-------------PVYRTAIRYYLQML 93 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHSCSC-------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HhccchHHHHH-HHHhhcccchhhhhhhhH-------------HHHHHHHHHHHHHH
Confidence 5568999999999999999999 99999999999 999998888876543211 23456788899999
Q ss_pred c-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 436 G-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 436 g-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
+ |+|+ +||+||+.|+. -+++.+.||
T Consensus 94 ~P~~P~-itEeiw~~l~~-~si~~~~WP 119 (128)
T d1h3na1 94 FPFAPH-LAEELWHWFWP-DSLFEAGWP 119 (128)
T ss_dssp TTTSHH-HHHHHHTTTCS-SCHHHHCCC
T ss_pred HHHHHH-HHHHHHHHhCC-CccccCCCC
Confidence 9 9999 99999999975 467777787
|
| >d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.64 E-value=3.8e-05 Score=72.20 Aligned_cols=74 Identities=9% Similarity=0.060 Sum_probs=43.7
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++.++| +|--|+|.|||||.-. ...+.+++ ..|+++.+.-+ |.|.. + . ..+..+-.++........+
T Consensus 27 ~~~~~y-~G~~PTG~lHlGh~v~---~~~~~~lq-~~g~~~~~~Ia-D~~a~-~-----~-~~~~~~~~~~~~~~~~~~~ 93 (306)
T d1j1ua_ 27 DEKSAY-IGFEPSGKIHLGHYLQ---IKKMIDLQ-NAGFDIIILLA-DLHAY-L-----N-QKGELDEIRKIGDYNKKVF 93 (306)
T ss_dssp SSEEEE-EEECCCSSCBHHHHHH---HHHHHHHH-HTTEEEEEEEC-HHHHH-H-----T-TCCCHHHHHHHHHHHHHHH
T ss_pred CCCeEE-EeECCCCcchHHHHHH---HHHHHHHH-HCCCcEEEEec-cHHHH-h-----h-hccchhhhhhhhhHHHHHH
Confidence 444554 7888999999999642 23455544 45999886543 21110 0 0 1122334455566667778
Q ss_pred HhcCCCC
Q 012397 118 ADLQCLP 124 (464)
Q Consensus 118 ~~lgi~~ 124 (464)
..+|+.+
T Consensus 94 ~a~G~~~ 100 (306)
T d1j1ua_ 94 EAMGLKA 100 (306)
T ss_dssp HHTTCCC
T ss_pred Hhhhccc
Confidence 8889863
|
| >d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.00024 Score=53.32 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhccCCCccHHH
Q 012397 368 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSE 445 (464)
Q Consensus 368 ~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLgi~p~~~~e~ 445 (464)
++.+++.++|+|++++|.|++. |+++++.+|+..+.... ........++.+..+|||+.. ..++
T Consensus 22 ~~~~~F~~Am~DDlNTp~Ala~-lfel~k~~N~~~~~~~~------------~~~~~~~~l~~~~~vLGll~~-~p~~ 85 (87)
T d1li5a1 22 AFEARFIEAMDDDFNTPEAYSV-LFDMAREVNRLKAEDMA------------AANAMASHLRKLSAVLGLLEQ-EPEA 85 (87)
T ss_dssp HHHHHHHHHHHBTSCHHHHHHH-HHHHHHHHHHHHHHCHH------------HHHHHHHHHHHHHTTTTCSCS-CHHH
T ss_pred HHHHHHHHHHHhhcCcHHHHHH-HHHHHHHHHHHhcCCHH------------HHHHHHHHHHHHHhHcCCCCC-CHHH
Confidence 4668899999999999999999 99999999998754321 113344567788999998876 5543
|
| >d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.51 E-value=8.5e-05 Score=70.87 Aligned_cols=67 Identities=24% Similarity=0.284 Sum_probs=41.8
Q ss_pred CeeEEEecccCccccchHHHHHHhh--ccCCCCccEEEEeeeee-eCCc-ccccccCCccCHHHHHHhcCchhHHHHHhh
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCA--ACQDSNVSYWMHNGHVT-NNNE-KMSKSLGNFFTIRQITERYHPLALRHFLIS 311 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a--~~~~~~~~~~~~~~~v~-~~G~-KmSks~gn~i~~~dll~~~~~dalR~~ll~ 311 (464)
..+++++|.|+. +|.. .++-.+ .+...+. . +++.++. ++|+ |||||.||.|++.| +|+.++=.+.+
T Consensus 183 ~~~~vp~G~DQ~-~~i~--l~Rdla~r~~~~~~~-~-~~~p~L~gldG~~KMSKS~~naI~L~d-----sp~~i~~Ki~~ 252 (343)
T d1h3fa1 183 RADVEMGGTDQR-FNLL--VGREVQRAYGQSPQV-C-FLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMR 252 (343)
T ss_dssp TCSEEEEEGGGH-HHHH--HHHHHHHHTTCCCCE-E-EEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHT
T ss_pred cccccccccchH-HHHH--HHHHHHhhcCccccc-e-eeccccccccccchhhcccccceeeec-----hhHHHHHHHhc
Confidence 478999999963 3332 333333 2333332 3 4444554 4884 99999999998875 67777655555
Q ss_pred c
Q 012397 312 A 312 (464)
Q Consensus 312 ~ 312 (464)
.
T Consensus 253 ~ 253 (343)
T d1h3fa1 253 V 253 (343)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.00093 Score=63.28 Aligned_cols=68 Identities=22% Similarity=0.124 Sum_probs=35.1
Q ss_pred CCeeEEEecccCccccchHHHHHHhhcc-CCCCccEEEEeeeee-eCCcccccc-cCCccCHHHHHHhcCchhHHHHHhh
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAAC-QDSNVSYWMHNGHVT-NNNEKMSKS-LGNFFTIRQITERYHPLALRHFLIS 311 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~-~~~~~~~~~~~~~v~-~~G~KmSks-~gn~i~~~dll~~~~~dalR~~ll~ 311 (464)
...+++++|.|+.. |. ..++-.+-. ...++.. +++.++. ++|.||||| .||.|.+.| +++.++-=+.+
T Consensus 174 ~~ad~v~~G~DQ~~-~i--~l~rd~a~r~~~~~~~~-l~~pll~~l~g~kmsks~~~~~I~l~D-----~~~~I~kKI~~ 244 (339)
T d1n3la_ 174 LKVDAQFGGIDQRK-IF--TFAEKYLPALGYSKRVH-LMNPMVPGLTGSKMSSSEEESKIDLLD-----RKEDVKKKLKK 244 (339)
T ss_dssp TTCSEEEEEGGGHH-HH--HHHHHHGGGGTCCCCEE-EEECCCCCSSCC-------CCSCBTTC-----CHHHHHHHHHT
T ss_pred ccCCccccchhHHH-HH--HHHHHHHhhhccCccee-eeeccccccccccccccchhhcccccC-----CHHHHHHHHhh
Confidence 35889999999653 32 233333322 2223333 4445554 389988886 699887765 55556554444
|
| >d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=95.97 E-value=0.0024 Score=59.58 Aligned_cols=58 Identities=16% Similarity=0.030 Sum_probs=37.2
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHH
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQ 295 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~d 295 (464)
.++++++|.|+.+.+..+--. ..-.++.++... ++...++. +|+|||||.||.|++.+
T Consensus 185 ~~~iqiGGsDQ~~Ni~~Grdl-~~~~~~~~~~~~-it~pLl~~~~G~Km~KS~~n~i~l~~ 243 (323)
T d1jila_ 185 NCKIQVGGSDQWGNITSGIEL-MRRMYGQTDAYG-LTIPLVTKSDGKKFGKSESGAVWLDA 243 (323)
T ss_dssp CEEEEEEEGGGHHHHHHHHHH-HHHHHCCCCCEE-EEECCCBCTTSCBTTBCSSSBCBSST
T ss_pred hchhhhhccccHHHhhhhhhh-hhhhcccccceE-EecccccchhhhhhhhcCCCCeeeec
Confidence 589999999976665533222 222233333333 44445544 89999999999998765
|
| >d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=92.00 E-value=0.031 Score=51.62 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=44.2
Q ss_pred CcceEEEeCCCCCCc-CCcccchhHHHHHHHHHHHHHCCCeEEEecCCcc--ccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTD--VDDKIIRRANDLGENPLSLSNRYCQEYL 114 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~-lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd--~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 114 (464)
++.++| +|-=|+++ |||||+-+.. .-|++...|++|..+-|-.. .|+|--. ..+......+-.+.+...+.
T Consensus 29 ~~~~~Y-~G~DPTa~sLHlGhlv~l~----~l~~~q~~Gh~~i~LiG~~T~~IGDPsgk-~~eR~~l~~e~i~~n~~~~~ 102 (319)
T d2ts1a_ 29 ERVTLY-CGFDPTADSLHIGHLATIL----TMRRFQQAGHRPIALVGGATGLIGDPSGK-KSERTLNAKETVEAWSARIK 102 (319)
T ss_dssp SCCEEE-EEECCSSSSCBGGGHHHHH----HHHHHHHTTCEEEEEECTTGGGTCCCTTC-SSCCCCCCHHHHHHHHHHHH
T ss_pred CCceEE-EeecCCCCcchHHHHHHHH----HHHHHHHcCCceeEEeeehhhccCCCccc-chhhhcCCHHHHHHHHHHHH
Confidence 444555 45666654 9999998886 67888899999998875432 2332111 11112223444455555555
Q ss_pred HHHHh
Q 012397 115 VDMAD 119 (464)
Q Consensus 115 ~~l~~ 119 (464)
+.+..
T Consensus 103 ~q~~~ 107 (319)
T d2ts1a_ 103 EQLGR 107 (319)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 55554
|
| >d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.25 E-value=0.22 Score=47.04 Aligned_cols=76 Identities=12% Similarity=-0.025 Sum_probs=49.5
Q ss_pred CCcceEEEeCCCCCCc-CCcccchhHHHHHHHHHHHHH-CCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 012397 37 RGKVGMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYL 114 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~-lHiGHar~~l~~D~laR~lr~-~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 114 (464)
.|+...+.||--|+|. +||||.-+++ ..|++.. .|.+|.+ ...|++. ....+.++++. .++..++.
T Consensus 71 ~gkp~~vytG~~PSg~~lHlGh~v~~~----~~~~~q~~~~~~v~i-~iaD~~a------~~~~~~~~~e~-~~~~~e~~ 138 (386)
T d1r6ta2 71 NKKPFYLYTGRGPSSEAMHVGHLIPFI----FTKWLQDVFNVPLVI-QMTDDEK------YLWKDLTLDQA-YGDAVENA 138 (386)
T ss_dssp TTCCEEEEEEECCCTTCCBGGGHHHHH----HHHHHHHHHTCCEEE-EECHHHH------HHHSSCCHHHH-HHHHHHHH
T ss_pred cCCCeEEEeccCCCCchhHHHHHHHHH----HHHHHHHhcccceEE-EecchHh------hhcccCCHHHH-HHHHHHHH
Confidence 4667777888999995 8999986664 3456554 5677664 4445332 12234565554 45666777
Q ss_pred HHHHhcCCCC
Q 012397 115 VDMADLQCLP 124 (464)
Q Consensus 115 ~~l~~lgi~~ 124 (464)
.++-.+|+.+
T Consensus 139 ~~~lA~GlDp 148 (386)
T d1r6ta2 139 KDIIACGFDI 148 (386)
T ss_dssp HHHHTTCCCT
T ss_pred HHHHHhCCCc
Confidence 7888889874
|
| >d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.82 E-value=0.77 Score=41.96 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=42.6
Q ss_pred EEeCCCCCCcCCcccchhHHHHHHHHHHHHH-CCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 43 ~~~~P~p~G~lHiGHar~~l~~D~laR~lr~-~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
+.||--|+|.+||||.-.+ +..+..+ .|++++ +.=.|.|... ...++.++. ++...+..++-.+|
T Consensus 4 v~tG~~PSG~~HlG~~~g~-----i~~~~~lq~~~~~~-i~iAD~halt-------~~~~~~~l~-~~~~~~~~~~lA~G 69 (326)
T d1i6la_ 4 IFSGIQPSGVITIGNYIGA-----LRQFVELQHEYNCY-FCIVDQHAIT-------VWQDPHELR-QNIRRLAALYLAVG 69 (326)
T ss_dssp EEEEECCCSCCBHHHHHHT-----HHHHHHHTTTSEEE-EEECHHHHTT-------SCCCHHHHH-HHHHHHHHHHHHTT
T ss_pred eEeCcCCCCccHHHHHHHH-----HHHHHHHhCCCCEE-EEeehHHhhc-------cCCCHHHHH-HHHHHHHHHhhhhh
Confidence 3578899999999995433 3344343 588875 4444655410 123454443 35566778888999
Q ss_pred CCC
Q 012397 122 CLP 124 (464)
Q Consensus 122 i~~ 124 (464)
+.+
T Consensus 70 ~dp 72 (326)
T d1i6la_ 70 IDP 72 (326)
T ss_dssp CCT
T ss_pred ccc
Confidence 985
|
| >d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=80.12 E-value=0.48 Score=43.26 Aligned_cols=58 Identities=12% Similarity=0.031 Sum_probs=36.2
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHH
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQ 295 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~d 295 (464)
.++++++|.|+.+....+.-.+... .++.+. +-++...++- +|+|||||.||.||+.+
T Consensus 185 ~~~~qiGGsDQ~gNi~~G~dli~~~-~~~~~~-~~lT~PLL~~~~G~K~~ks~~n~i~l~~ 243 (319)
T d2ts1a_ 185 GCRLQIGGSDQWGNITAGLELIRKT-KGEARA-FGLTIPLVTKADGTKFGKTESGTIWLDK 243 (319)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHH-HC--CC-EEEEECCCCCTTSCCTTCCSSCCCBSST
T ss_pred CCchhhccchhhhHHHHHHHHHHHh-cccccc-eEeecccccccccceeeecCCCCccccc
Confidence 5899999999766655433222222 232223 2244444444 89999999999988754
|
| >d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=80.05 E-value=0.37 Score=44.19 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=32.3
Q ss_pred EEEeCCCCCCc-CCcccchhHHHHHHHHHHHHHCCCeEEEecC--CccccH
Q 012397 42 MYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVRN--FTDVDD 89 (464)
Q Consensus 42 v~~~~P~p~G~-lHiGHar~~l~~D~laR~lr~~G~~V~~i~~--~dd~g~ 89 (464)
.+.||-=|+++ +||||+-+.. .-|++...||.+..+-| +...|+
T Consensus 33 ~~Y~G~DPTa~sLHlGhlv~l~----~l~~~q~~Gh~~i~LiG~~T~~iGD 79 (323)
T d1jila_ 33 TLYCGADPTADSLHIGHLLPFL----TLRRFQEHGHRPIVLIGGGTGMIGD 79 (323)
T ss_dssp EEEEEECCSSSSCBHHHHHHHH----HHHHHHHTTCEEEEEECTTGGGTCC
T ss_pred EEEEcccCCCccccHHHHHHHH----HHHHHHHhCCceEEeehhhhhhccC
Confidence 44456777777 9999998875 66888899999987753 444443
|