Citrus Sinensis ID: 012448

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
Protein Sequence
MDEELSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHcccccccccHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccEEEHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHcHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHcEEEccccccHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHHccccccHHHHEEEEEEcHEEccccHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHEHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHcccccEEEEEcccccccc
Coil and Loop (DISEMBL)
mdeelsmddsnqlldsasdfayhpgvqndaaAKKFLDRFPLSVILNtlqtkpdvpgleDTLVVCLERIFKtkygasliphympfvqvgltadshsVKRLACKTVTclledsdlEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLagfpngidiifpadnkaatdLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGvskkndtlETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGrllskddshmfidessaKTVISAIDGRlgflqsqdsDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAafdrqghgKQLAALHGLANiagktrsedkiilNADAEESLRHLIYEVAsrsskltpsglFLSVLQQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK
Flexible Loop (DISEMBL)
MDEELSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNtlqtkpdvpglEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTlleegvskkndtLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK
Low Complexity Region (SEG)
MDEELSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATllllclPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK
Disordered region (IsUnstruct)
*******************FAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQ********SALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTV*********
Disordered Region (DISOPRED)
**********NQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINT***A******
Disordered Region (DISEMBL)
*********SNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTV*********
Disordered Region (DISPRO)
*****SMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDAS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEELSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	463	2.2.26 [Sep-21-2011]
Q5IFJ8	504	26S proteasome non-ATPase	N/A	no	0.766	0.704	0.217	2e-06
Q16401	504	26S proteasome non-ATPase	yes	no	0.766	0.704	0.211	3e-06
Q0P5A6	503	26S proteasome non-ATPase	yes	no	0.751	0.691	0.208	3e-05
Q8BJY1	504	26S proteasome non-ATPase	yes	no	0.809	0.744	0.203	6e-05

>sp|Q5IFJ8|PSMD5_MACFA 26S proteasome non-ATPase regulatory subunit 5 OS=Macaca fascicularis GN=PSMD5 PE=2 SV=3

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/387 (21%), Positives = 167/387 (43%), Gaps = 32/387 (8%)

Query: 85  VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVAT 144
           +Q GL     SVK L    +  ++E+SD       ++L + E+   ++ C+   N  VA 
Sbjct: 88  LQRGLIHPDDSVKILTLSQIGRIVENSD----AVTEILNNAELLKQIVYCIGGENLSVAK 143

Query: 145 ASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVA 204
           A++ ++ +++    G++ +F  ++    DL + V + + + R RV  LIV++ SVS    
Sbjct: 144 AAIKSLSRISLTQAGLEALF--ESNLLDDLKS-VMKTNDIVRYRVYELIVEISSVSPESL 200

Query: 205 SVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGN 264
           +    + L+T L   ++ + D L   + +E++  LA   H  ++L++  ++  + ++I  
Sbjct: 201 NYCTTSGLVTQLLRELTGE-DVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVG 259

Query: 265 SATE---TILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECES 321
           + ++   +      +   G L   D      +          ++      +SQD      
Sbjct: 260 ADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPI-----FVEKVFEMTESQDPTMTGV 314

Query: 322 ALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSED 381
           A++ +G +GS+++G  +L        R ++     R GH  + A       +  K R  D
Sbjct: 315 AVDTVGILGSNVEGKQVLQKTGTRFERLLM-----RIGHQSKNAP------VELKIRCLD 363

Query: 382 KI--ILNADAEESLRHLIYEVASRSSKLT--PSGLFLSVLQQA-AEIRLAGYRMITGLVA 436
            I  +L    E+    L+    S  S L+  P  LF  +  Q   E+  A  ++ T +  
Sbjct: 364 AISSLLYLPPEQQTDDLLRMTESWFSALSRDPLELFRGISSQPFPELHCAALKVFTAIAN 423

Query: 437 RPWCLMELCSKQEIINTVTDASTEQQK 463
           +PW    + +    +  V D S EQ K
Sbjct: 424 QPWAQKLMFNIPGFVEYVVDRSVEQDK 450

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). In the initial step of the base subcomplex assembly is part of an intermediate PSMD5:PSMC2:PSMC1:PSMD2 module which probably assembles with a PSMD10:PSMC4:PSMC5:PAAF1 module followed by dissociation of PSMD5.
Macaca fascicularis (taxid: 9541)

>sp|Q16401|PSMD5_HUMAN 26S proteasome non-ATPase regulatory subunit 5 OS=Homo sapiens GN=PSMD5 PE=1 SV=3

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 82/387 (21%), Positives = 167/387 (43%), Gaps = 32/387 (8%)

Query: 85  VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVAT 144
           +Q GL     SVK L    +  ++E+SD       ++L + E+   ++ C+   N  VA 
Sbjct: 88  LQRGLIHPDDSVKILTLSQIGRIVENSD----AVTEILNNAELLKQIVYCIGGENLSVAK 143

Query: 145 ASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVA 204
           A++ ++ +++    G++ +F  ++    DL + V + + + R RV  LI+++ SVS    
Sbjct: 144 AAIKSLSRISLTQAGLEALF--ESNLLDDLKS-VMKTNDIVRYRVYELIIEISSVSPESL 200

Query: 205 SVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGN 264
           +    + L+T L   ++ + D L   + +E++  LA   H  ++L++  ++  + ++I  
Sbjct: 201 NYCTTSGLVTQLLRELTGE-DVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVG 259

Query: 265 SATE---TILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECES 321
           + ++   +      +   G L   D      +          ++     ++SQD      
Sbjct: 260 ADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPI-----FVEKVFEMIESQDPTMIGV 314

Query: 322 ALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSED 381
           A++ +G +GS+++G  +L        R ++     R GH  + A       +  K R  D
Sbjct: 315 AVDTVGILGSNVEGKQVLQKTGTRFERLLM-----RIGHQSKNAP------VELKIRCLD 363

Query: 382 KI--ILNADAEESLRHLIYEVASRSSKLT--PSGLFLSVLQQA-AEIRLAGYRMITGLVA 436
            I  +L    E+    L+    S  S L+  P  LF  +  Q   E+  A  ++ T +  
Sbjct: 364 AISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTAIAN 423

Query: 437 RPWCLMELCSKQEIINTVTDASTEQQK 463
           +PW    + +    +  V D S E  K
Sbjct: 424 QPWAQKLMFNSPGFVEYVVDRSVEHDK 450

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). In the initial step of the base subcomplex assembly is part of an intermediate PSMD5:PSMC2:PSMC1:PSMD2 module which probably assembles with a PSMD10:PSMC4:PSMC5:PAAF1 module followed by dissociation of PSMD5.

Homo sapiens (taxid: 9606)

>sp|Q0P5A6|PSMD5_BOVIN 26S proteasome non-ATPase regulatory subunit 5 OS=Bos taurus GN=PSMD5 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 161/393 (40%), Gaps = 45/393 (11%)

Query: 85  VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVAT 144
           +Q GLT  + SVK L    V  ++E+SD       ++L + E+   ++ C+   N  VA 
Sbjct: 88  LQRGLTHPNDSVKILTLSQVGRIVENSD----AVTEILNNAELLKQIVYCIGGENLSVAK 143

Query: 145 ASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVA 204
            ++ ++ +++    G++ +F  ++    DL + V + + + R RV  LIV++ SVS    
Sbjct: 144 TAIKSLSRISLTQAGLEALF--ESNLLDDLKS-VMKTNDIVRYRVYELIVEISSVSPESL 200

Query: 205 SVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGN 264
           +    + L+T L   ++ + D L   + +E++  LA   H  ++L++  ++  + ++I  
Sbjct: 201 NCCTTSGLVTQLLRELTGE-DVLVRATCIEMVTSLACTHHGRQYLAQEGVIDQISNIIVG 259

Query: 265 SATE---TILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECES 321
           +  +   +      +   G L   D      +          ++      +SQD      
Sbjct: 260 ADADPFSSFYLPGFVKFFGNLAIMDSPQQICERYPI-----FMEKVFEMTESQDPTMIGV 314

Query: 322 ALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSED 381
           A++ +G +GS+++G  +L                  Q  G +   L        K  S +
Sbjct: 315 AVDTIGILGSNVEGKQVL------------------QKTGTRFERLLMKIGYQAKNASTE 356

Query: 382 KIILNADAEESLRHLIYEVASRSSKLT----------PSGLFLSVLQQA-AEIRLAGYRM 430
             I   DA  SL +L  E      ++T          P  LF  +  Q   E+  A  ++
Sbjct: 357 LKIRCLDALSSLFYLPPEQTDDLLRMTESWFSSLSRDPLELFRGISNQPFPELHCAALKV 416

Query: 431 ITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
            T +  +PW    + +    +  V D S E  K
Sbjct: 417 FTAIANQPWAQKLMFNSPGFVEYVMDRSVEHDK 449

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). In the initial step of the base subcomplex assembly is part of an intermediate PSMD5:PSMC2:PSMC1:PSMD2 module which probably assembles with a PSMD10:PSMC4:PSMC5:PAAF1 module followed by dissociation of PSMD5.

Bos taurus (taxid: 9913)

>sp|Q8BJY1|PSMD5_MOUSE 26S proteasome non-ATPase regulatory subunit 5 OS=Mus musculus GN=Psmd5 PE=1 SV=4

 Score = 49.3 bits (116), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 84/413 (20%), Positives = 174/413 (42%), Gaps = 38/413 (9%)

Query: 62  VVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQL 121
           V  LER+ +      L  +    +Q GLT    SVK L    +  ++E+S+       ++
Sbjct: 65  VSILERLLQAVEPIHLARNLRLDLQRGLTHPDDSVKTLTLSQIGRIVENSE----AVTEI 120

Query: 122 LIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQC 181
           L + E+   ++ C+   N  VA A++ ++ +++    G++ +F  ++    DL N V + 
Sbjct: 121 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALF--ESNLLDDLKN-VMKT 177

Query: 182 SSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241
           + + R RV  LI+ + SVS    +    + L+T L + ++ + D L   + +E++  LA 
Sbjct: 178 NDVVRYRVYELIIDISSVSSESLNYCTTSGLVTQLLKELTGE-DVLVRATCIEMVTSLAY 236

Query: 242 IQHSAEFLSRTTLLQLLCSLIGNSATETI---LRSRAIMISGRLLSKDDSHMFIDESSA- 297
             H  ++L++  ++  + ++I  + ++          +   G L   D      +     
Sbjct: 237 THHGRQYLAQEGVIDQISNIIVGADSDPFSGFYLPGFVKFFGNLAVMDSPQQICERYPVF 296

Query: 298 -KTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFD 356
            + V    D       SQD      A++ +G +GSS++G  +L        R ++   + 
Sbjct: 297 LEKVFEMAD-------SQDPTMIGVAVDTVGILGSSVEGKQVLQKTGTRFERVLMRVGYQ 349

Query: 357 RQGHGKQLA-----ALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSG 411
            +    +L      A+  L  ++ + +++D + +      S+        SR S      
Sbjct: 350 AKNASTELKIRCLDAVSSLLYLSPEQQTDDFLGMTESWFSSM--------SRDSL----E 397

Query: 412 LFLSVLQQA-AEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
           LF  +  Q   E+  A  ++ T +  +PW    + +    +  V D S E  K
Sbjct: 398 LFRGISNQPFPELHCAALKVFTAIADQPWAQRLMFNSPGFVEFVMDRSVEHDK 450

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). In the initial step of the base subcomplex assembly is part of an intermediate PSMD5:PSMC2:PSMC1:PSMD2 module which probably assembles with a PSMD10:PSMC4:PSMC5:PAAF1 module followed by dissociation of PSMD5.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	463
302142965	525	unnamed protein product [Vitis vinifera]	0.995	0.878	0.715	0.0
225461530	527	PREDICTED: 26S proteasome non-ATPase reg	0.995	0.874	0.712	0.0
118485840	528	unknown [Populus trichocarpa]	0.995	0.873	0.710	0.0
356517098	525	PREDICTED: uncharacterized protein LOC10	0.987	0.870	0.679	1e-178
255582937	612	26S proteasome non-ATPase regulatory sub	0.997	0.754	0.676	1e-177
357516527	526	26S proteasome non-ATPase regulatory sub	0.991	0.872	0.650	1e-170
449456623	525	PREDICTED: uncharacterized protein LOC10	0.995	0.878	0.642	1e-168
224128067	573	predicted protein [Populus trichocarpa]	0.993	0.802	0.626	1e-167
84468258	524	hypothetical protein [Trifolium pratense	0.987	0.872	0.646	1e-159
18400660	519	26S proteasome non-ATPase regulatory sub	0.987	0.880	0.599	1e-158

>gi|302142965|emb|CBI20260.3| unnamed protein product [Vitis vinifera]

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/461 (71%), Positives = 383/461 (83%)

Query: 3   EELSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLV 62
           EE ++DD   LL +ASDF +HPGV +DA+AK FL RFPL VI+N LQTK DVPG+E TLV
Sbjct: 2   EEYTLDDPTLLLQAASDFGHHPGVHSDASAKAFLHRFPLPVIINVLQTKADVPGVESTLV 61

Query: 63  VCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLL 122
            CLERIF TK+GASLIP YMPFVQVGL ADS  V+ LACKTV+CLLE+       A QL+
Sbjct: 62  ACLERIFCTKHGASLIPQYMPFVQVGLRADSQVVRCLACKTVSCLLENFGENTVPAAQLI 121

Query: 123 IDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCS 182
           ++++IYPLLLDCLINGNE+VATASMDAIK LAG   G++IIFPA++  AT L NL A+CS
Sbjct: 122 VEHDIYPLLLDCLINGNEQVATASMDAIKSLAGSFEGMEIIFPANDNEATHLRNLAARCS 181

Query: 183 SLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEI 242
           SLGRVRVL+L+VKLFSVS SVAS+I  ++LL LLE  V   +DTL TLS+LELLYELAEI
Sbjct: 182 SLGRVRVLALVVKLFSVSSSVASLIHNSDLLNLLEAEVCNTDDTLVTLSVLELLYELAEI 241

Query: 243 QHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVIS 302
           QH  EFL RTTL+QLL S+IGN++ E+ILRSRA+MISGRLLSK++   FIDES  KTVIS
Sbjct: 242 QHGTEFLPRTTLVQLLSSIIGNTSMESILRSRAMMISGRLLSKENIFKFIDESCVKTVIS 301

Query: 303 AIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGK 362
            IDGRL  L+SQD+DECESALE LGQIGSSI GA LLLL  PPAARHVIDAAFDRQG G+
Sbjct: 302 LIDGRLRSLESQDADECESALETLGQIGSSIHGAELLLLSSPPAARHVIDAAFDRQGRGR 361

Query: 363 QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAE 422
            LAALH L NI+G+TRSE+KI+LN DAEESL+HLIYE AS+S KLTPSGLFLSVLQQ AE
Sbjct: 362 HLAALHALGNISGETRSENKIMLNNDAEESLQHLIYESASKSPKLTPSGLFLSVLQQDAE 421

Query: 423 IRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
           +RLAGYR+ITGLVARPWCLME+CSKQEI+N +T A +E  K
Sbjct: 422 VRLAGYRVITGLVARPWCLMEICSKQEIVNIITGAHSETTK 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461530|ref|XP_002285156.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 5-like [Vitis vinifera]

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/463 (71%), Positives = 383/463 (82%), Gaps = 2/463 (0%)

Query: 3   EELSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLV 62
           EE ++DD   LL +ASDF +HPGV +DA+AK FL RFPL VI+N LQTK DVPG+E TLV
Sbjct: 2   EEYTLDDPTLLLQAASDFGHHPGVHSDASAKAFLHRFPLPVIINVLQTKADVPGVESTLV 61

Query: 63  VCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLL 122
            CLERIF TK+GASLIP YMPFVQVGL ADS  V+ LACKTV+CLLE+       A QL+
Sbjct: 62  ACLERIFCTKHGASLIPQYMPFVQVGLRADSQVVRCLACKTVSCLLENFGENTVPAAQLI 121

Query: 123 IDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCS 182
           ++++IYPLLLDCLINGNE+VATASMDAIK LAG   G++IIFPA++  AT L NL A+CS
Sbjct: 122 VEHDIYPLLLDCLINGNEQVATASMDAIKSLAGSFEGMEIIFPANDNEATHLRNLAARCS 181

Query: 183 SLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEI 242
           SLGRVRVL+L+VKLFSVS SVAS+I  ++LL LLE  V   +DTL TLS+LELLYELAEI
Sbjct: 182 SLGRVRVLALVVKLFSVSSSVASLIHNSDLLNLLEAEVCNTDDTLVTLSVLELLYELAEI 241

Query: 243 QHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDES--SAKTV 300
           QH  EFL RTTL+QLL S+IGN++ E+ILRSRA+MISGRLLSK++   FIDES    KTV
Sbjct: 242 QHGTEFLPRTTLVQLLSSIIGNTSMESILRSRAMMISGRLLSKENIFKFIDESLLGVKTV 301

Query: 301 ISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGH 360
           IS IDGRL  L+SQD+DECESALE LGQIGSSI GA LLLL  PPAARHVIDAAFDRQG 
Sbjct: 302 ISLIDGRLRSLESQDADECESALETLGQIGSSIHGAELLLLSSPPAARHVIDAAFDRQGR 361

Query: 361 GKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQA 420
           G+ LAALH L NI+G+TRSE+KI+LN DAEESL+HLIYE AS+S KLTPSGLFLSVLQQ 
Sbjct: 362 GRHLAALHALGNISGETRSENKIMLNNDAEESLQHLIYESASKSPKLTPSGLFLSVLQQD 421

Query: 421 AEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
           AE+RLAGYR+ITGLVARPWCLME+CSKQEI+N +T A +E  K
Sbjct: 422 AEVRLAGYRVITGLVARPWCLMEICSKQEIVNIITGAHSETTK 464

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485840|gb|ABK94767.1| unknown [Populus trichocarpa]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/466 (71%), Positives = 386/466 (82%), Gaps = 5/466 (1%)

Query: 1   MD-EELSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLED 59
           MD EE SM+D +QLL SAS+FA +PGV ND AAK+FLDRFPL VI+N LQTK +VPGLE 
Sbjct: 1   MDGEEFSMEDPSQLLQSASEFANYPGVPNDVAAKEFLDRFPLPVIINALQTKSEVPGLEA 60

Query: 60  TLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL 119
           TLV CLERIFKTK GASLIPHYMPFVQVGLTADS  V+ LACKTV+CLL++ D E   A 
Sbjct: 61  TLVACLERIFKTKCGASLIPHYMPFVQVGLTADSQLVRCLACKTVSCLLKNID-ETISAA 119

Query: 120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA 179
           QL+ID  +YPLLLDCLINGNE+VATASM+AI+KLAG   G++I+FPA+N     LGNL A
Sbjct: 120 QLIIDNGVYPLLLDCLINGNEQVATASMEAIEKLAGSQKGMEIVFPANNSDDMHLGNLSA 179

Query: 180 QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYEL 239
           +CSSLGRVRVLSLIVKLFSVSR VAS ++ +NLL+LLE  +   +DTL +LS+ EL YEL
Sbjct: 180 RCSSLGRVRVLSLIVKLFSVSRDVASAVYNSNLLSLLEAKIRDTDDTLVSLSVFELFYEL 239

Query: 240 AEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESS--A 297
           AE++H+ EFLS+TTL+QLL S I N + E ILRSRA+MISGRLLS D+ +MFIDES+   
Sbjct: 240 AEVKHATEFLSKTTLVQLLSSTISNMSKEAILRSRAMMISGRLLSNDNIYMFIDESNLGV 299

Query: 298 KTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDR 357
           K +ISAIDGRL  L+SQD +ECESALEALGQIGSS QGATLLL   PPAARHVIDAAFD+
Sbjct: 300 KAIISAIDGRLR-LESQDLNECESALEALGQIGSSNQGATLLLTISPPAARHVIDAAFDK 358

Query: 358 QGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL 417
              GKQLA+LH LANI+G+TRS+  IILN DAEESLR LIYE AS+SSKLTPSGLFLSVL
Sbjct: 359 HARGKQLASLHSLANISGETRSDSNIILNGDAEESLRLLIYEAASKSSKLTPSGLFLSVL 418

Query: 418 QQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
           QQ +++RLA YR++TGLVARPWCLME+CSKQEIIN VT  +TE  K
Sbjct: 419 QQDSQVRLAAYRVLTGLVARPWCLMEICSKQEIINIVTGPNTETTK 464

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517098|ref|XP_003527227.1| PREDICTED: uncharacterized protein LOC100785671 [Glycine max]

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 314/462 (67%), Positives = 377/462 (81%), Gaps = 5/462 (1%)

Query: 7   MDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLE 66
           MDDS+QLL +ASDF ++PG  +D +++ FL+RFPL VI+N LQT+ DVPGLE+TLV CLE
Sbjct: 1   MDDSSQLLQAASDFVHYPGPHSDDSSRDFLNRFPLPVIINALQTQLDVPGLENTLVACLE 60

Query: 67  RIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLE--DSDLEASCALQLLID 124
           R+F TK GASLIP YMPFVQVGL ADS +V+ LACKTVT LLE  D+D + + +  L+ D
Sbjct: 61  RLFNTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVTSLLENLDNDHKVAASACLIKD 120

Query: 125 YEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSL 184
           + IYPLLLDCLINGNE+VA  + DAIKKLAGFP G++IIFP+D    TDL  + +QCSSL
Sbjct: 121 FNIYPLLLDCLINGNEQVAAVATDAIKKLAGFPEGMEIIFPSDKGDDTDLEIIASQCSSL 180

Query: 185 GRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQH 244
           GRVRVL+L+VKLFSVSRS AS I+  NLL LLE  +   +DTL TLS+LEL+YELAEI+H
Sbjct: 181 GRVRVLALVVKLFSVSRSAASTIYSLNLLQLLEAEIRNADDTLVTLSVLELIYELAEIEH 240

Query: 245 SAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAI 304
             EFLS+T++ QLL S+I +++ E+ILRSRA+MISGRLLSKD  + F DE   K VIS+I
Sbjct: 241 GTEFLSKTSIFQLLSSMISHNSMESILRSRAMMISGRLLSKDIIYSFTDEPCVKAVISSI 300

Query: 305 DGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQ---GHG 361
           DGRL  L++ D DECE+ALE+LG +GSSIQGATLLL    PAARHVI+AAF+RQ   GHG
Sbjct: 301 DGRLQSLEASDRDECETALESLGHMGSSIQGATLLLSGSSPAARHVINAAFERQGPTGHG 360

Query: 362 KQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAA 421
           KQLAALH L NI+G+TRSE+ IILNA+ EE+LR LIYE ASRSSKLTPSGLFLSVLQQ +
Sbjct: 361 KQLAALHALGNISGETRSENNIILNAEEEENLRRLIYETASRSSKLTPSGLFLSVLQQDS 420

Query: 422 EIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
           EIRLAGYRM++GLVARPWCLME+CSKQEIIN VTD STE  K
Sbjct: 421 EIRLAGYRMLSGLVARPWCLMEICSKQEIINKVTDPSTETTK 462

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582937|ref|XP_002532239.1| 26S proteasome non-ATPase regulatory subunit, putative [Ricinus communis] gi|223528057|gb|EEF30133.1| 26S proteasome non-ATPase regulatory subunit, putative [Ricinus communis]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 313/463 (67%), Positives = 368/463 (79%), Gaps = 1/463 (0%)

Query: 1   MDEELSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDT 60
           MDEE SM+D   LL SASDFAY+PG QNDA  K FLD FPL VI + LQTK DVP LE T
Sbjct: 88  MDEEFSMEDPTPLLQSASDFAYYPGAQNDAVVKDFLDHFPLPVIFSALQTKADVPDLERT 147

Query: 61  LVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQ 120
           LV CLE+IFKTKYGASLIP YM FV +GL ADS  VK LACKTV+CLLE+ + +     Q
Sbjct: 148 LVACLEKIFKTKYGASLIPQYMAFVNLGLKADSQLVKCLACKTVSCLLENVNDKTISPAQ 207

Query: 121 LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQ 180
           L+ID  IYPLLL C++ GN EVA ASM+AI+K AGFP  I++IFPA+N+  T L NL A+
Sbjct: 208 LVIDNGIYPLLLHCVLIGNGEVAIASMEAIQKFAGFPKAIEVIFPANNEDFTHLRNLSAR 267

Query: 181 CSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELA 240
           CSSLGRVR+LSL+VKLF+VS  VA+V+F +NLL+LLE  VS  +DTL TLSILEL YELA
Sbjct: 268 CSSLGRVRLLSLVVKLFTVSPDVAAVVFNSNLLSLLEAEVSNTDDTLVTLSILELFYELA 327

Query: 241 EIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTV 300
           E+QH  EFLS T L++LL S+I N + + ILRSRA+MISGRLLSK++ + F++ES  KTV
Sbjct: 328 EVQHGIEFLSSTNLIRLLPSIISNISADAILRSRAMMISGRLLSKENIYAFVNESGVKTV 387

Query: 301 ISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGH 360
           ISAIDGRLG ++SQD +ECE ALEA GQIGSS  GATLLL   PPAARHVIDAAFDRQ  
Sbjct: 388 ISAIDGRLG-VESQDLNECECALEAFGQIGSSTPGATLLLTMSPPAARHVIDAAFDRQAR 446

Query: 361 GKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQA 420
           GKQLAALH L  I+G++RSE  IILN +AEE+LR LIY+ AS++ KLTPSGLFLS+LQQ 
Sbjct: 447 GKQLAALHSLGYISGESRSESNIILNGEAEETLRRLIYDTASKTPKLTPSGLFLSILQQD 506

Query: 421 AEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
           AE RLA YRMITGLV RPWCLME+C+KQEI+N VTD +TE  K
Sbjct: 507 AEARLAAYRMITGLVFRPWCLMEICTKQEIVNIVTDPTTETIK 549

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516527|ref|XP_003628552.1| 26S proteasome non-ATPase regulatory subunit [Medicago truncatula] gi|355522574|gb|AET03028.1| 26S proteasome non-ATPase regulatory subunit [Medicago truncatula]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 303/466 (65%), Positives = 370/466 (79%), Gaps = 7/466 (1%)

Query: 1   MDEELSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDT 60
           MDE+     S QLL +A+DFA +PG  +D +A  FL+RFPL +I+N LQT+ DVPGLE T
Sbjct: 1   MDEQ----SSQQLLQAATDFANYPGSHSDDSATDFLNRFPLPLIINALQTQFDVPGLETT 56

Query: 61  LVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQ 120
           LVVCLER+FKTK+GASLIP YM FVQVGL +DS +V+ LACKTVT LLE+ D   + A  
Sbjct: 57  LVVCLERLFKTKFGASLIPQYMQFVQVGLQSDSQAVRSLACKTVTSLLENLDNSYTVAAH 116

Query: 121 LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQ 180
           L+ ++ IYPLLLDCLINGNEEVA  ++DAIKKLA F  G+DIIFP+     TDLG + +Q
Sbjct: 117 LIKEFNIYPLLLDCLINGNEEVAAGAIDAIKKLASFSEGLDIIFPSTKGGDTDLGIIASQ 176

Query: 181 CSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELA 240
           CSSLGRVRVL+L+VKLFSVS S AS I   NLL LLE  +   +DTL TLS+ ELLYELA
Sbjct: 177 CSSLGRVRVLALVVKLFSVSTSAASAICSLNLLKLLEAEIRSTDDTLVTLSVFELLYELA 236

Query: 241 EIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTV 300
           E++H  EFLS+T+L QLL S+I + + ++ILRSRA+MISGRLLSK++++ FIDE  AK+V
Sbjct: 237 EVEHGTEFLSKTSLFQLLSSIISDDSKDSILRSRAMMISGRLLSKENTYSFIDEPCAKSV 296

Query: 301 ISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQG- 359
           IS+IDGRL  L   + DE E+ALE+LGQIG +I+GA LLL    PAARH IDAAFDRQG 
Sbjct: 297 ISSIDGRLQSLDPSNKDEFETALESLGQIGLTIRGAKLLLSGTSPAARHAIDAAFDRQGP 356

Query: 360 --HGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL 417
             HG+QLAALH L NI+G+TRSE+ +IL+A+AEE+L  L+YE ASRSSKLTPSGLFLSVL
Sbjct: 357 ERHGRQLAALHALGNISGETRSENDVILDAEAEENLLRLLYETASRSSKLTPSGLFLSVL 416

Query: 418 QQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
           QQ +EIR+AGYRMI+GLV+RPWCLME+CS+QEIIN VTD STE  K
Sbjct: 417 QQDSEIRIAGYRMISGLVSRPWCLMEICSRQEIINIVTDPSTETTK 462

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456623|ref|XP_004146048.1| PREDICTED: uncharacterized protein LOC101213054 [Cucumis sativus] gi|449507084|ref|XP_004162929.1| PREDICTED: uncharacterized protein LOC101228134 [Cucumis sativus]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 296/461 (64%), Positives = 369/461 (80%)

Query: 3   EELSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLV 62
           EE S++D  +LL +A++FA +PGV+ DA+ K+FLDRFPL  I+N LQTK + PGLEDTLV
Sbjct: 2   EEFSVNDPTRLLQAAANFANYPGVRTDASVKEFLDRFPLPAIINALQTKAEFPGLEDTLV 61

Query: 63  VCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLL 122
            CL+RIFKTKYGASLIPHYMPFVQVGL ADS +V+ LACKTVT LL++SD  A   +QL+
Sbjct: 62  ACLDRIFKTKYGASLIPHYMPFVQVGLQADSQTVRTLACKTVTRLLQESDETALSPIQLI 121

Query: 123 IDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCS 182
           IDY IYPLLLDCL+NGNE+VA +SMD+IK LA FP G++II P++   AT LG + + CS
Sbjct: 122 IDYGIYPLLLDCLLNGNEQVANSSMDSIKTLAAFPQGMEIIIPSNKTEATHLGTVASTCS 181

Query: 183 SLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEI 242
           SLGRVRV++L+VKLFSVS SVAS ++ ANLL+LLE  ++   DTL TLS+LELLYEL EI
Sbjct: 182 SLGRVRVMALVVKLFSVSSSVASAVYNANLLSLLESEINNSKDTLVTLSVLELLYELVEI 241

Query: 243 QHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVIS 302
           +H  +FL RT+ LQLL S+I NS+ E+ILRSRA++I GRLLSK++    +DES  + +IS
Sbjct: 242 EHGTKFLPRTSFLQLLGSIISNSSAESILRSRAMVICGRLLSKENIFSLVDESCLRNLIS 301

Query: 303 AIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGK 362
           A+DG LG  + +D +  E+A+EALGQIGSS  GATLLL   P   +HVI AAFDR  HGK
Sbjct: 302 AVDGILGSSEGEDVNVSEAAIEALGQIGSSTWGATLLLSSFPTCVKHVIYAAFDRHEHGK 361

Query: 363 QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAE 422
           QLAA+H L NI G+ RSE+ I+LN +AEE+LR LIY++ASRSSK+TPSGLFL+VLQQ +E
Sbjct: 362 QLAAMHALGNIFGEGRSENDIMLNDNAEENLRDLIYQIASRSSKMTPSGLFLAVLQQDSE 421

Query: 423 IRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
           IRLA YRMITGLVARPWCL E+CSKQ+I+N V DAS+E  K
Sbjct: 422 IRLASYRMITGLVARPWCLTEICSKQDIVNIVGDASSETTK 462

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128067|ref|XP_002329073.1| predicted protein [Populus trichocarpa] gi|222869742|gb|EEF06873.1| predicted protein [Populus trichocarpa]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 321/512 (62%), Positives = 373/512 (72%), Gaps = 52/512 (10%)

Query: 1   MD-EELSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLED 59
           MD EE SM+D +QLL SAS+FA +PGV ND AAK+FLDRFPL VI+N LQTK +VPGLE 
Sbjct: 1   MDGEEFSMEDPSQLLQSASEFANYPGVPNDVAAKEFLDRFPLPVIINALQTKSEVPGLEA 60

Query: 60  TLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL 119
           TLV CLERIFKTK GASLIPHYMPFVQVGLTADS  V+ LACKTV+CLL++ D E   A 
Sbjct: 61  TLVACLERIFKTKCGASLIPHYMPFVQVGLTADSQLVRCLACKTVSCLLKNID-ETISAA 119

Query: 120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA 179
           QL+ID  +YPLLLDCLINGNE+VATASM+AI+KLAG   G++I+FPA+N     LGNL A
Sbjct: 120 QLIIDNGVYPLLLDCLINGNEQVATASMEAIEKLAGSQKGMEIVFPANNSDDMHLGNLSA 179

Query: 180 QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYEL 239
           +CSSLGRVRVLSLIVKLFSVSR VAS ++ +NLL+LLE  +   +DTL +LS+ EL YE+
Sbjct: 180 RCSSLGRVRVLSLIVKLFSVSRDVASAVYNSNLLSLLEAKIRDTDDTLVSLSVFELFYEV 239

Query: 240 AEIQHSAEFLSRTTLLQLL-------------CSLIGNSATETILRSRAIMISGRLLSKD 286
             I  +        L   L             C L+ N + E ILRSRA+MISGRLLS D
Sbjct: 240 GAILLNDIVCLNNILPSGLISFFIFYFLFSFICYLV-NMSKEAILRSRAMMISGRLLSND 298

Query: 287 DSHMFIDESS-----------------------------------AKTVISAIDGRLGFL 311
           + +MFIDESS                                    K +ISAIDGRL  L
Sbjct: 299 NIYMFIDESSKTYPEVLELIDFHKDIYLKKLHFICKCTVFLSDLGVKAIISAIDGRLR-L 357

Query: 312 QSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLA 371
           +SQD +ECESALEALGQIGSS QGATLLL   PPAARHVIDAAFD+   GKQLA+LH LA
Sbjct: 358 ESQDLNECESALEALGQIGSSNQGATLLLTISPPAARHVIDAAFDKHARGKQLASLHSLA 417

Query: 372 NIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAEIRLAGYRMI 431
           NI+G+TRS+  IILN DAEESLR LIYE AS+SSKLTPSGLFLSVLQQ +++RLA YR++
Sbjct: 418 NISGETRSDSNIILNGDAEESLRLLIYEAASKSSKLTPSGLFLSVLQQDSQVRLAAYRVL 477

Query: 432 TGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
           TGLVARPWCLME+CSKQEIIN VT  +TE  K
Sbjct: 478 TGLVARPWCLMEICSKQEIINIVTGPNTETTK 509

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84468258|dbj|BAE71213.1| hypothetical protein [Trifolium pratense]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 298/461 (64%), Positives = 373/461 (80%), Gaps = 4/461 (0%)

Query: 7   MDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLE 66
           MD+ +QLL++A+DFA++PG  +D +A +FL+RFPL +I+N LQT+ DVPGLE TLV CL+
Sbjct: 1   MDEQSQLLEAATDFAHYPGSHSDHSATQFLNRFPLPLIINALQTQFDVPGLESTLVQCLQ 60

Query: 67  RIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYE 126
           R+FKTK GASLIP YMPFVQVGL ADS +V+ LACKTVTCLL++ D   + A  L+ ++ 
Sbjct: 61  RLFKTKLGASLIPQYMPFVQVGLQADSQAVRSLACKTVTCLLKNLDNSHTVAAHLIKEFN 120

Query: 127 IYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGR 186
           IY LLLDCLINGNE+VA A+++AIKKLA FP G+DI+FP+     TDLG + +QCSSLGR
Sbjct: 121 IYSLLLDCLINGNEDVAAAAINAIKKLASFPEGMDIVFPSTKGGDTDLGIIASQCSSLGR 180

Query: 187 VRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSA 246
           VRVL+L+VKLFSVS S AS I+  NLL LLE  +   +DTL TLS+ ELLYELAE++H A
Sbjct: 181 VRVLALVVKLFSVSTSAASAIYSLNLLKLLEAEIRSADDTLVTLSVFELLYELAEVEHGA 240

Query: 247 EFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDG 306
           EFLS+++L QLL S+I + ++++ILRSRA+MISGR+LSK+ ++  IDE  AK VIS+IDG
Sbjct: 241 EFLSKSSLFQLLSSIISDDSSDSILRSRAMMISGRILSKEITYSSIDEPCAKIVISSIDG 300

Query: 307 RLGFLQ-SQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQG---HGK 362
           RL  L+   + DE E+ALE+LGQIG  I+GA LLL    PAARHVIDAAFDRQG   HG+
Sbjct: 301 RLQSLEDPSNRDEFETALESLGQIGLFIRGAKLLLSGTSPAARHVIDAAFDRQGPERHGR 360

Query: 363 QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAE 422
           QLAALH L NI+G+TRSE  IIL+A+AE++L  L+YE ASRSSKLTPSGLFLSVLQQ +E
Sbjct: 361 QLAALHALGNISGETRSESDIILDAEAEDNLLRLLYETASRSSKLTPSGLFLSVLQQDSE 420

Query: 423 IRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
           IR+AGYRMI+GLV+RPWCLME+CS+QEIIN VTD STE  K
Sbjct: 421 IRIAGYRMISGLVSRPWCLMEICSRQEIINIVTDPSTETTK 461

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400660|ref|NP_566503.1| 26S proteasome non-ATPase regulatory subunit 5 [Arabidopsis thaliana] gi|30102760|gb|AAP21298.1| At3g15180 [Arabidopsis thaliana] gi|110743085|dbj|BAE99435.1| hypothetical protein [Arabidopsis thaliana] gi|332642107|gb|AEE75628.1| 26S proteasome non-ATPase regulatory subunit 5 [Arabidopsis thaliana]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 274/457 (59%), Positives = 355/457 (77%)

Query: 7   MDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLE 66
           M+D NQL D+A +FA++PG QN+ + K+FLDRFPL VI N LQT PD+PG E+TLV CLE
Sbjct: 1   MEDVNQLFDAAFEFAHYPGAQNETSVKEFLDRFPLPVIFNALQTDPDIPGFENTLVTCLE 60

Query: 67  RIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYE 126
           R+FKTKYGASLIP YMP +QVGL ADS  VK LACKTV CLLED D     ++QL+++  
Sbjct: 61  RLFKTKYGASLIPQYMPVLQVGLKADSAVVKSLACKTVLCLLEDCDTNDVSSVQLVVNNG 120

Query: 127 IYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGR 186
           IYPLLLD +IN ++EVA A+ + IK LA FP+ + +IFP++    T L NL A+CSSL R
Sbjct: 121 IYPLLLDYIINSDDEVANAASETIKSLARFPDAMSVIFPSETNDPTHLRNLAARCSSLAR 180

Query: 187 VRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSA 246
           VRVLSLIVKLFS+SR VAS + K+ LL LLE  +    DTL  L++LEL YEL E++HS+
Sbjct: 181 VRVLSLIVKLFSISRLVASEVKKSGLLDLLEAEMKGTKDTLVILNVLELYYELMEVEHSS 240

Query: 247 EFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDG 306
           EF+ +T+L+QLLCS+I  ++T    + RA+MISGRLLSK++ +  ++E+S K +ISAIDG
Sbjct: 241 EFVPQTSLIQLLCSIISGTSTGPYEKLRAMMISGRLLSKENIYKVVEEASVKALISAIDG 300

Query: 307 RLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAA 366
            L  ++  D+D  E+A++ALGQ+GS+ +GA L+L   PPAARHV+ +AFDR  HGKQLAA
Sbjct: 301 SLESVEMNDTDAQEAAIDALGQMGSTTKGADLVLSTSPPAARHVVASAFDRNAHGKQLAA 360

Query: 367 LHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAEIRLA 426
           LH LANIAG+TR +   I++  AEESLR LIY+ A++S+KLTPSGLFLSVLQQ++EIRLA
Sbjct: 361 LHALANIAGETRPKSNRIVDGKAEESLRCLIYDAAAQSTKLTPSGLFLSVLQQSSEIRLA 420

Query: 427 GYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
           GYR +T LVARPWCL+E+ +K+EIIN VTDA+TE  K
Sbjct: 421 GYRTLTALVARPWCLVEILAKEEIINIVTDATTETAK 457

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	463
UNIPROTKB|F1P7L2	502	PSMD5 "Uncharacterized protein	0.822	0.758	0.218	7.9e-11
UNIPROTKB|Q16401	504	PSMD5 "26S proteasome non-ATPa	0.818	0.751	0.217	4.8e-10
UNIPROTKB|Q5IFJ8	504	PSMD5 "26S proteasome non-ATPa	0.814	0.748	0.218	7.9e-10
UNIPROTKB|F1N6Z0	504	PSMD5 "26S proteasome non-ATPa	0.822	0.755	0.211	4.7e-09
RGD|1308434	504	Psmd5 "proteasome (prosome, ma	0.812	0.746	0.206	7.9e-09
MGI|MGI:1914248	504	Psmd5 "proteasome (prosome, ma	0.814	0.748	0.201	1e-08
UNIPROTKB|F1NKW9	504	PSMD5 "Uncharacterized protein	0.820	0.753	0.213	3.6e-07
ZFIN|ZDB-GENE-050417-28	505	psmd5 "proteasome (prosome, ma	0.604	0.554	0.234	3.6e-07
UNIPROTKB|Q0P5A6	503	PSMD5 "26S proteasome non-ATPa	0.570	0.524	0.226	1.3e-06
UNIPROTKB|J9P2T7	461	J9P2T7 "Uncharacterized protei	0.550	0.553	0.198	0.00078

UNIPROTKB|F1P7L2 PSMD5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 7.9e-11, P = 7.9e-11
 Identities = 91/416 (21%), Positives = 172/416 (41%)

Query:    58 EDTLVVC-LERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS 116
             + TL V  LER+ +      +  +    +Q GLT    SVK L    V  ++E+SD    
Sbjct:    58 QTTLCVSILERLLQAMEPVHIARNLGADLQKGLTHPDDSVKILTLSQVGRIVENSD---- 113

Query:   117 CALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGN 176
                ++L + E+   ++ C+   N  VA A++ ++ K++    G++ +F  ++    DL  
Sbjct:   114 AVTEILNNGELLKQIVYCIGGDNLSVAKAAIKSLSKISLTQAGLEALF--ESNLLDDLKR 171

Query:   177 LVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLT-LLEEGVSKKNDTLETLSILEL 235
              V + + + R RV  LIV++ SVS    +    + L+T LL E   +  D L   + +E+
Sbjct:   172 -VMKTNDIVRYRVYELIVEISSVSPESLTYCTTSGLVTQLLRELTGE--DVLVRATCIEM 228

Query:   236 LYELAEIQHSAEFLSRTTLLQLLCSLIGNSATE---TILRSRAIMISGRLLSKDDSHMFI 292
             +  LA   H  ++L++  ++  + ++I  + ++   +      +   G L   D      
Sbjct:   229 VTSLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAIMDSPQQIC 288

Query:   293 DESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATXXXXXXPPAARHVID 352
             +          ++      +SQD      A++ +G +GS+I+G            R ++ 
Sbjct:   289 ERYPV-----FVEKVFEMTESQDPTMIGVAVDTVGILGSNIEGKQVLQKTGTRFERLLMK 343

Query:   353 AAFDRQGHGKQLAALHGLANIAGKTRSEDKI--ILNADAEESLRHLIYEVASRSSKLT-- 408
               +  +    +L           K R  D I  I     E+    L+    S  S L+  
Sbjct:   344 IGYQAKNASTEL-----------KIRCLDAISSIFYIPPEQQTEDLLRMTESWFSALSRD 392

Query:   409 PSGLFLSVLQQA-AEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
             P  LF  +  Q   E+  A  ++ T +  +PW    + +    +  V D S E  K
Sbjct:   393 PLELFRGISNQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVMDRSVEHDK 448

GO:0044183 "protein binding involved in protein folding" evidence=IEA

UNIPROTKB|Q16401 PSMD5 "26S proteasome non-ATPase regulatory subunit 5" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 4.8e-10, P = 4.8e-10
 Identities = 90/414 (21%), Positives = 176/414 (42%)

Query:    60 TLVVC-LERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA 118
             TL V  LER+ +      +  +    +Q GL     SVK L    +  ++E+SD      
Sbjct:    62 TLCVSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSD----AV 117

Query:   119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLV 178
              ++L + E+   ++ C+   N  VA A++ ++ +++    G++ +F  ++    DL + V
Sbjct:   118 TEILNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALF--ESNLLDDLKS-V 174

Query:   179 AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLT-LLEEGVSKKNDTLETLSILELLY 237
              + + + R RV  LI+++ SVS    +    + L+T LL E   +  D L   + +E++ 
Sbjct:   175 MKTNDIVRYRVYELIIEISSVSPESLNYCTTSGLVTQLLRELTGE--DVLVRATCIEMVT 232

Query:   238 ELAEIQHSAEFLSRTTLLQLLCSLIGNSATE---TILRSRAIMISGRLLSKDDSHMFIDE 294
              LA   H  ++L++  ++  + ++I  + ++   +      +   G L   D      + 
Sbjct:   233 SLAYTHHGRQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICER 292

Query:   295 SSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATXXXXXXPPAARHVIDAA 354
                      ++     ++SQD      A++ +G +GS+++G            R ++   
Sbjct:   293 YPI-----FVEKVFEMIESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLM--- 344

Query:   355 FDRQGHGKQLAALHGLANIAGKTRSEDKI--ILNADAEESLRHLIYEVASRSSKLT--PS 410
               R GH  + A +  L     K R  D I  +L    E+    L+    S  S L+  P 
Sbjct:   345 --RIGHQSKNAPVE-L-----KIRCLDAISSLLYLPPEQQTDDLLRMTESWFSSLSRDPL 396

Query:   411 GLFLSVLQQA-AEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
              LF  +  Q   E+  A  ++ T +  +PW    + +    +  V D S E  K
Sbjct:   397 ELFRGISSQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVVDRSVEHDK 450

GO:0044183 "protein binding involved in protein folding" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IDA

GO:0070682 "proteasome regulatory particle assembly" evidence=TAS

GO:0022624 "proteasome accessory complex" evidence=ISS

GO:0000502 "proteasome complex" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5IFJ8 PSMD5 "26S proteasome non-ATPase regulatory subunit 5" [Macaca fascicularis (taxid:9541)]

 Score = 172 (65.6 bits), Expect = 7.9e-10, P = 7.9e-10
 Identities = 90/411 (21%), Positives = 174/411 (42%)

Query:    62 VVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQL 121
             V  LER+ +      +  +    +Q GL     SVK L    +  ++E+SD       ++
Sbjct:    65 VSILERLLQAMEPVHVARNLRVDLQRGLIHPDDSVKILTLSQIGRIVENSD----AVTEI 120

Query:   122 LIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQC 181
             L + E+   ++ C+   N  VA A++ ++ +++    G++ +F  ++    DL + V + 
Sbjct:   121 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALF--ESNLLDDLKS-VMKT 177

Query:   182 SSLGRVRVLSLIVKLFSVSRSVASVIFKANLLT-LLEEGVSKKNDTLETLSILELLYELA 240
             + + R RV  LIV++ SVS    +    + L+T LL E   +  D L   + +E++  LA
Sbjct:   178 NDIVRYRVYELIVEISSVSPESLNYCTTSGLVTQLLRELTGE--DVLVRATCIEMVTSLA 235

Query:   241 EIQHSAEFLSRTTLLQLLCSLIGNSATE---TILRSRAIMISGRLLSKDDSHMFIDESSA 297
                H  ++L++  ++  + ++I  + ++   +      +   G L   D      +    
Sbjct:   236 YTHHGRQYLAQEGVIDQISNIIVGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPI 295

Query:   298 KTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATXXXXXXPPAARHVIDAAFDR 357
                   ++      +SQD      A++ +G +GS+++G            R ++     R
Sbjct:   296 -----FVEKVFEMTESQDPTMTGVAVDTVGILGSNVEGKQVLQKTGTRFERLLM-----R 345

Query:   358 QGHGKQLAALHGLANIAGKTRSEDKI--ILNADAEESLRHLIYEVASRSSKLT--PSGLF 413
              GH  + A +  L     K R  D I  +L    E+    L+    S  S L+  P  LF
Sbjct:   346 IGHQSKNAPVE-L-----KIRCLDAISSLLYLPPEQQTDDLLRMTESWFSALSRDPLELF 399

Query:   414 LSVLQQA-AEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
               +  Q   E+  A  ++ T +  +PW    + +    +  V D S EQ K
Sbjct:   400 RGISSQPFPELHCAALKVFTAIANQPWAQKLMFNIPGFVEYVVDRSVEQDK 450

GO:0022624 "proteasome accessory complex" evidence=ISS

UNIPROTKB|F1N6Z0 PSMD5 "26S proteasome non-ATPase regulatory subunit 5" [Bos taurus (taxid:9913)]

 Score = 165 (63.1 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 88/416 (21%), Positives = 172/416 (41%)

Query:    58 EDTLVVC-LERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS 116
             + TL V  LER+ +      +  +    +Q GLT  + SVK L    V  ++E+SD    
Sbjct:    60 QTTLCVSILERLLQALEPVHVARNLRVDLQRGLTHPNDSVKILTLSQVGRIVENSD---- 115

Query:   117 CALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGN 176
                ++L + E+   ++ C+   N  VA  ++ ++ +++    G++ +F  ++    DL +
Sbjct:   116 AVTEILNNAELLKQIVYCIGGENLSVAKTAIKSLSRISLTQAGLEALF--ESNLLDDLKS 173

Query:   177 LVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLT-LLEEGVSKKNDTLETLSILEL 235
              V + + + R RV  LIV++ SVS    +    + L+T LL E   +  D L   + +E+
Sbjct:   174 -VMKTNDIVRYRVYELIVEISSVSPESLNCCTTSGLVTQLLRELTGE--DVLVRATCIEM 230

Query:   236 LYELAEIQHSAEFLSRTTLLQLLCSLI-GNSAT--ETILRSRAIMISGRLLSKDDSHMFI 292
             +  LA   H  ++L++  ++  + ++I G  A    +      +   G L   D      
Sbjct:   231 VTSLACTHHGRQYLAQEGVIDQISNIIVGADADPFSSFYLPGFVKFFGNLAIMDSPQQIC 290

Query:   293 DESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATXXXXXXPPAARHVID 352
             +          ++      +SQD      A++ +G +GS+++G            R ++ 
Sbjct:   291 ERYPI-----FMEKVFEMTESQDPTMIGVAVDTIGILGSNVEGKQVLQKTGTRFERLLMK 345

Query:   353 AAFDRQGHGKQLAALHGLANIAGKTRSEDKI--ILNADAEESLRHLIYEVASRSSKLT-- 408
               +  +    +L           K R  D +  +     E+    L+    S  S L+  
Sbjct:   346 IGYQAKNASTEL-----------KIRCLDALSSLFYLPPEQQTDDLLRMTESWFSSLSRD 394

Query:   409 PSGLFLSVLQQA-AEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
             P  LF  +  Q   E+  A  ++ T +  +PW    + +    +  V D S E  K
Sbjct:   395 PLELFRGISNQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVMDRSVEHDK 450

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0044183 "protein binding involved in protein folding" evidence=IEA

RGD|1308434 Psmd5 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 5" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 7.9e-09, P = 7.9e-09
 Identities = 85/412 (20%), Positives = 170/412 (41%)

Query:    62 VVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQL 121
             V  LER+ +      L  +    +Q GLT    SVK L    +  ++EDS+       ++
Sbjct:    65 VSILERLLQAVEPIHLARNLRLDLQRGLTHPDDSVKTLTLSQIGRIVEDSE----AVTEV 120

Query:   122 LIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQC 181
             L + E+   ++ C+   N  VA A++ ++ +++    G++ +F  ++    DL N V + 
Sbjct:   121 LSNAELLRQVVCCIGGENLSVAKAAIKSLSRISLTQAGLEALF--ESNLLDDLKN-VMKT 177

Query:   182 SSLGRVRVLSLIVKLFSVSRSVASVIFKANLLT-LLEEGVSKKNDTLETLSILELLYELA 240
             + + R RV  LI+ + SVS    +    + L+T LL E   +  D L   + +E++  LA
Sbjct:   178 NDVVRYRVYELIIDISSVSSESLNYCTTSGLVTQLLRELTGE--DVLVRATCIEMVTSLA 235

Query:   241 EIQHSAEFLSRTTLLQLLCSLIGNSATETI---LRSRAIMISGRLLSKDDSHMFIDESSA 297
                H  ++L++  ++  + ++I  + ++          +   G L   D      +    
Sbjct:   236 YTHHGRQYLAQEGVIDQISNIIVGADSDPFSGFYLPGFVKFFGNLAVMDSPQQICERYPV 295

Query:   298 KTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATXXXXXXPPAARHVIDAAFDR 357
                   ++       SQD      A++ +G +GSS++G            R +    +  
Sbjct:   296 -----FLEKVFAMADSQDPTMIGVAVDTVGILGSSVEGKQVLQKTGTRFERLLTRIGYQA 350

Query:   358 QGHGKQLA-----ALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGL 412
             +    +L      A+  L  ++ + +++D + +     ES     +   SR S      L
Sbjct:   351 KNASTELKIRCLDAVSSLLYLSPEQQTDDFLGMT----ESW----FSSVSRDSL----EL 398

Query:   413 FLSVLQQA-AEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
             F  +  Q   E+  A  ++ T +  +PW    + +    +  V D S E  K
Sbjct:   399 FRGISNQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFVEFVMDRSVEHDK 450

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0044183 "protein binding involved in protein folding" evidence=IEA

MGI|MGI:1914248 Psmd5 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 5" [Mus musculus (taxid:10090)]

 Score = 162 (62.1 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 83/411 (20%), Positives = 167/411 (40%)

Query:    62 VVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQL 121
             V  LER+ +      L  +    +Q GLT    SVK L    +  ++E+S+       ++
Sbjct:    65 VSILERLLQAVEPIHLARNLRLDLQRGLTHPDDSVKTLTLSQIGRIVENSE----AVTEI 120

Query:   122 LIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQC 181
             L + E+   ++ C+   N  VA A++ ++ +++    G++ +F  ++    DL N V + 
Sbjct:   121 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALF--ESNLLDDLKN-VMKT 177

Query:   182 SSLGRVRVLSLIVKLFSVSRSVASVIFKANLLT-LLEEGVSKKNDTLETLSILELLYELA 240
             + + R RV  LI+ + SVS    +    + L+T LL+E   +  D L   + +E++  LA
Sbjct:   178 NDVVRYRVYELIIDISSVSSESLNYCTTSGLVTQLLKELTGE--DVLVRATCIEMVTSLA 235

Query:   241 EIQHSAEFLSRTTLLQLLCSLIGNSATETI---LRSRAIMISGRLLSKDDSHMFIDESSA 297
                H  ++L++  ++  + ++I  + ++          +   G L   D      +    
Sbjct:   236 YTHHGRQYLAQEGVIDQISNIIVGADSDPFSGFYLPGFVKFFGNLAVMDSPQQICERYPV 295

Query:   298 KTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATXXXXXXPPAARHVIDAAFDR 357
                   ++       SQD      A++ +G +GSS++G            R ++   +  
Sbjct:   296 -----FLEKVFEMADSQDPTMIGVAVDTVGILGSSVEGKQVLQKTGTRFERVLMRVGYQA 350

Query:   358 QGHGKQLAALHGLANIAGKTRSEDKI--ILNADAEESLRHLIYEVASRSSKLTPSGL--F 413
             +    +L           K R  D +  +L    E+     +    S  S ++   L  F
Sbjct:   351 KNASTEL-----------KIRCLDAVSSLLYLSPEQQTDDFLGMTESWFSSMSRDSLELF 399

Query:   414 LSVLQQA-AEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
               +  Q   E+  A  ++ T +  +PW    + +    +  V D S E  K
Sbjct:   400 RGISNQPFPELHCAALKVFTAIADQPWAQRLMFNSPGFVEFVMDRSVEHDK 450

GO:0006457 "protein folding" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=IDA

GO:0044183 "protein binding involved in protein folding" evidence=IEA

UNIPROTKB|F1NKW9 PSMD5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 148 (57.2 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 87/408 (21%), Positives = 166/408 (40%)

Query:    62 VVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQL 121
             V  LER+ +      +I +    ++ GL     SVK L+   V  ++E+SD       ++
Sbjct:    65 VAVLERLLQALDPLYVIQNLREELRKGLFHPDDSVKILSISQVGRIVENSD----AVREI 120

Query:   122 LIDYEIYPLLLDCLINGNEEVATASMDAIKKL---AGFPNGIDIIFPADNKAATDLGNLV 178
             L   E+   +++C+  G E++A A  +AIK L   A   +G++ +F +     +DL N++
Sbjct:   121 LNSPEVLRQIINCI--GGEKIAVAK-EAIKSLSRIAQTQDGLEALFVSS--LLSDLKNVM 175

Query:   179 AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYE 238
             A  + + R RV  LIV++ SVS    +    + L++ L  G    +D L   + +E++  
Sbjct:   176 AT-NDVVRYRVYELIVEISSVSADSLNYCANSGLISDLI-GELTGDDVLVRATCIEMVTS 233

Query:   239 LAEIQHSAEFLSRTTLLQLLCSLIGNSATETI---LRSRAIMISGRLLSKDDSHMFIDES 295
             LA   H  ++L++  ++  + ++I  + ++          I   G L   D      +  
Sbjct:   234 LAHSPHGRQYLAQQGIIDKISNIIIGAESDPFSGFYLPGFIKFFGNLAVVDSPQQICERY 293

Query:   296 SAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATXXXXXXPPAARHVIDAAF 355
                     ++      +S D      A++ LG +GSS++G           AR       
Sbjct:   294 PV-----FMEKVFEMAESHDPTMNGVAVDTLGILGSSVEGKQVLQK-----ARGRFQNLL 343

Query:   356 DRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLS 415
             ++ GH  + A             S   +      E+ LR      +S SS+       +S
Sbjct:   344 NKIGHQAKNAPTELRLRCLDAVSSLLYLPPEQQTEDLLRMTESWFSSLSSQPLELFRSIS 403

Query:   416 VLQQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
               Q   ++     R+ T +  + W    + +    +  + D S E  K
Sbjct:   404 T-QPFPDLHCGALRVFTAIANQAWAQKLMLNSPGFVEYIVDRSVEPDK 450

GO:0044183 "protein binding involved in protein folding" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

ZFIN|ZDB-GENE-050417-28 psmd5 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 5" [Danio rerio (taxid:7955)]

 Score = 148 (57.2 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 70/298 (23%), Positives = 137/298 (45%)

Query:    41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLA 100
             L +I + L T  D   +E   V  L R+ +      L  +Y   +Q GL     SVK L 
Sbjct:    47 LEIIFSLLNTN-DKEQIE-VCVEILSRVLQALEPVQLAQNYRKALQSGLNHPDDSVKVL- 103

Query:   101 CKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI 160
               T+T +   +   A    Q+L + EI   ++ C+      VA  ++ A+ KL+    G+
Sbjct:   104 --TLTQIGRVAG-HAEGVTQMLNNVEILHDVIQCISVERIAVAKEAIAALSKLSNTKAGL 160

Query:   161 DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLT-LLEEG 219
             D +F +D      L +++   S + R RV  LIV++ +VS         + L++ +LEE 
Sbjct:   161 DALFRSD--LLNKLKDVMLT-SDIIRYRVYELIVEVSTVSPVSLGYCANSGLISQMLEEL 217

Query:   220 VSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMIS 279
                 +D L   + +E++  LA+ QH  ++L++  ++  + ++I  + ++T     ++ + 
Sbjct:   218 TG--DDVLVRATAIEMVTNLAQSQHGRQYLAQQGIMDKISNMIIAAESDTF---SSLYLP 272

Query:   280 GRLLSKDDSHMFID--ESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQG 335
             G L+    S   +D  +   +     ++     + + D      AL+ LG +G +++G
Sbjct:   273 G-LVKFFGSLAIMDSPQQVCEKYPVFLEVVFSMVMNLDPTLTPVALDTLGVLGGTVEG 329

GO:0044183 "protein binding involved in protein folding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q0P5A6 PSMD5 "26S proteasome non-ATPase regulatory subunit 5" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 64/283 (22%), Positives = 129/283 (45%)

Query:    58 EDTLVVC-LERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS 116
             + TL V  LER+ +      +  +    +Q GLT  + SVK L    V  ++E+SD    
Sbjct:    60 QTTLCVSILERLLQALEPVHVARNLRVDLQRGLTHPNDSVKILTLSQVGRIVENSD---- 115

Query:   117 CALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGN 176
                ++L + E+   ++ C+   N  VA  ++ ++ +++    G++ +F  ++    DL +
Sbjct:   116 AVTEILNNAELLKQIVYCIGGENLSVAKTAIKSLSRISLTQAGLEALF--ESNLLDDLKS 173

Query:   177 LVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLT-LLEEGVSKKNDTLETLSILEL 235
              V + + + R RV  LIV++ SVS    +    + L+T LL E   +  D L   + +E+
Sbjct:   174 -VMKTNDIVRYRVYELIVEISSVSPESLNCCTTSGLVTQLLRELTGE--DVLVRATCIEM 230

Query:   236 LYELAEIQHSAEFLSRTTLLQLLCSLI-GNSAT--ETILRSRAIMISGRLLSKDDSHMFI 292
             +  LA   H  ++L++  ++  + ++I G  A    +      +   G L   D      
Sbjct:   231 VTSLACTHHGRQYLAQEGVIDQISNIIVGADADPFSSFYLPGFVKFFGNLAIMDSPQQIC 290

Query:   293 DESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQG 335
             +          ++      +SQD      A++ +G +GS+++G
Sbjct:   291 ERYPI-----FMEKVFEMTESQDPTMIGVAVDTIGILGSNVEG 328

GO:0022624 "proteasome accessory complex" evidence=ISS

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0044183 "protein binding involved in protein folding" evidence=IEA

UNIPROTKB|J9P2T7 J9P2T7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 98 (39.6 bits), Expect = 0.00078, Sum P(2) = 0.00078
 Identities = 56/282 (19%), Positives = 109/282 (38%)

Query:   191 SLIVKLFSVSRSVASVIFKANLLT-LLEEGVSKKNDTLETLSILELLYELAEIQHSAEFL 249
             +LIV++ SVS    +    + L+T LL E   +  D L   + +E++  LA   H  ++L
Sbjct:   144 ALIVEISSVSPESLTYCTPSGLVTQLLRELTGE--DVLVRATCIEMVTSLAYTHHGRQYL 201

Query:   250 SRTTLLQLLCSLIGNSATE---TILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDG 306
             ++  ++  + ++I  + ++   +      +   G L   D      +          ++ 
Sbjct:   202 AQEGVIDQISNIIVGADSDPFSSFYLPGLVKFFGNLAIMDSPQQICERYPV-----FVEK 256

Query:   307 RLGFLQSQDSDECESALEALGQIGSSIQGATXXXXXXPPAARHVIDAAFDRQGHGKQLAA 366
                  +SQD      A++ +G +GS+++G            R ++   +  +    +L  
Sbjct:   257 VFEMTESQDPTMIGVAVDTVGILGSNVEGKQVLQKTGTRFERLLMKIGYQAKNASTEL-- 314

Query:   367 LHGLANIAGKTRSEDKI--ILNADAEESLRHLIYEVASRSSKLT--PSGLFLSVLQQA-A 421
                      K R  D I  I     E+    L+    S  S L+  P  LF  +  Q   
Sbjct:   315 ---------KIRCLDAISSIFYIPPEQQTEDLLRMTESWFSALSRDPLELFRGISNQPFP 365

Query:   422 EIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
             E+  A  ++ T +  +PW    + +    +  V D S E  K
Sbjct:   366 ELHCAALKVFTAIANQPWAQKLMFNSPGFVEYVMDRSVEHDK 407

GO:0044183 "protein binding involved in protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027733001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (525 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	463
pfam10508	504	pfam10508, Proteasom_PSMB, Proteasome non-ATPase 2	1e-71

>gnl|CDD|220789 pfam10508, Proteasom_PSMB, Proteasome non-ATPase 26S subunit

 Score =  235 bits (600), Expect = 1e-71
 Identities = 125/470 (26%), Positives = 208/470 (44%), Gaps = 29/470 (6%)

Query: 2   DEELSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTL 61
            E    D  + L            + +  +A   L+  PL +  + L    +    E T 
Sbjct: 1   MENWCKDLLSNLSSKPEILEALTELSSAISAIPNLEALPLQIAEDQLFNCLNTNNREQTT 60

Query: 62  VVC--LERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL 119
           +    L+RI KT     LIP+Y   +Q GL   + +V+ L  K +  +++  +     AL
Sbjct: 61  LCLEILKRILKTLAPDDLIPNYQVVLQEGLPHPTPAVRALVLKELLRIVQSKEG----AL 116

Query: 120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA 179
           +LL + E+  L+ DCL + +  V  A+++ + KL+    G+D +F ++ +  T L  L+ 
Sbjct: 117 ELLKNEELLSLIADCLRDEDTSVGEAAINLLSKLSKSEPGLDELFDSNLQ--TKLKILLK 174

Query: 180 QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYEL 239
             S + R R+  L V+L SVS  + S  +++ LL  L + +  + D L  LS+LELL +L
Sbjct: 175 T-SDIVRCRIYELAVELASVSPDLLSACWESGLLKKLLKELDGE-DVLVQLSVLELLTDL 232

Query: 240 AEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKT 299
           AE  H AE+L +  ++  + +LI     + +    A+ + G +         +       
Sbjct: 233 AEGNHGAEYLIQNGVVDKISNLIQGVEEDPL---GAMYLPGIMKFFGKLAT-MSPPQVIQ 288

Query: 300 VISAIDGRL-GFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQ 358
                  RL   L S+D     +AL+ LG + SS++G  LL+     A  H + AA   Q
Sbjct: 289 TYPDFLERLFSMLDSEDPTILPTALDTLGLLASSVEGKQLLMFKTSGALEHTLKAAGAHQ 348

Query: 359 G---HGKQLAALHGLANIAG-KTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFL 414
                  +  AL  L +I    T    + ILN      +    YE+ +R + L    L L
Sbjct: 349 TMLSVELKKRALQALTSIFYFATEQATEDILN------ITKSWYELLARKALLN---LIL 399

Query: 415 SVLQQA-AEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
            V++Q   E+R A  R +T +   PW    L +    I  + D STE  K
Sbjct: 400 DVIKQPFPELRCAALRFLTAIAKYPWGQTLLINTPGFIEYLLDRSTETNK 449

The 26S proteasome, a eukaryotic ATP-dependent, dumb-bell shaped, protease complex with a molecular mass of approx 20kDa consists of a central 20S proteasome,functioning as a catalytic machine, and two large V-shaped terminal modules, having possible regulatory roles,composed of multiple subunits of 25- 110 kDa attached to the central portion in opposite orientations. It is responsible for degradation of abnormal intracellular proteins, including oxidatively damaged proteins, and may play a role as a component of a cellular anti-oxidative system. Expression of catalytic core subunits including PSMB5 and peptidase activities of the proteasome were elevated following incubation with 3-methylcholanthrene. The 20S proteasome comprises a cylindrical stack of four rings, two outer rings formed by seven alpha-subunits (alpha1-alpha7) and two inner rings of seven beta-subunits (beta1-beta7). Two outer rings of alpha subunits maintain structure, while the central beta rings contain the proteolytic active core subunits beta1 (PSMB6), beta2 (PSMB7), and beta5 (PSMB5). Expression of PSMB5 can be altered by chemical reactants, such as 3-methylcholanthrene. Length = 504

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	463
KOG4413	524	consensus 26S proteasome regulatory complex, subun	100.0
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.71
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.59
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.47
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.38
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.38
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.1
PRK09687	280	putative lyase; Provisional	98.91
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.89
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.75
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.72
PRK09687	280	putative lyase; Provisional	98.72
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	98.71
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	98.66
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.64
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.62
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.58
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	98.58
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.49
PTZ00429	746	beta-adaptin; Provisional	98.47
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.43
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.42
PTZ00429	746	beta-adaptin; Provisional	98.31
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.3
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.0
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.85
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	97.83
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	97.64
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.62
KOG4199	461	consensus Uncharacterized conserved protein [Funct	97.52
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.48
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	97.33
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	97.33
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	97.29
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	97.19
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	97.13
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.04
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	97.02
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.8
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.78
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.72
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.71
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.68
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.61
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.56
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.55
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.45
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	96.33
TIGR02270	410	conserved hypothetical protein. Members are found	96.33
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.2
KOG4199	461	consensus Uncharacterized conserved protein [Funct	95.99
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.97
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	95.95
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.92
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.66
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	95.65
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.64
TIGR02270	410	conserved hypothetical protein. Members are found	95.57
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.48
KOG1048	717	consensus Neural adherens junction protein Plakoph	95.48
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	95.34
PF05536	543	Neurochondrin: Neurochondrin	95.32
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.25
KOG1293	678	consensus Proteins containing armadillo/beta-caten	95.25
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	95.2
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	95.2
COG1413	335	FOG: HEAT repeat [Energy production and conversion	95.1
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.04
KOG1242	569	consensus Protein containing adaptin N-terminal re	94.99
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	94.84
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	94.84
KOG2973	353	consensus Uncharacterized conserved protein [Funct	94.83
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	94.81
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	94.66
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	94.66
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	94.5
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	94.49
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	94.47
COG5096	757	Vesicle coat complex, various subunits [Intracellu	94.38
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	94.37
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	94.29
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	94.26
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.12
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	93.63
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	93.5
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.43
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	93.4
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	93.27
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	93.05
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	92.8
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	92.62
KOG1293	678	consensus Proteins containing armadillo/beta-caten	92.6
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	92.39
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	92.3
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	92.26
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	92.02
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	91.97
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	91.86
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	91.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	91.45
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	91.27
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	91.17
KOG4646	173	consensus Uncharacterized conserved protein, conta	90.91
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	90.48
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	90.32
PF05536	543	Neurochondrin: Neurochondrin	90.3
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	90.21
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	90.01
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	89.93
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	89.87
KOG0414	1251	consensus Chromosome condensation complex Condensi	89.27
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	89.25
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	89.06
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	88.88
COG1413	335	FOG: HEAT repeat [Energy production and conversion	88.8
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	88.67
PF14666	226	RICTOR_M: Rapamycin-insensitive companion of mTOR,	88.61
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	88.57
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	88.11
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	87.97
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	87.93
PF11894	1691	DUF3414: Protein of unknown function (DUF3414); In	87.61
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	87.6
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	87.33
KOG4653	982	consensus Uncharacterized conserved protein [Funct	87.12
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	87.11
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	86.72
KOG2025	892	consensus Chromosome condensation complex Condensi	86.69
KOG2734	536	consensus Uncharacterized conserved protein [Funct	86.55
KOG2259	823	consensus Uncharacterized conserved protein [Funct	86.52
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	86.37
KOG3678	832	consensus SARM protein (with sterile alpha and arm	85.42
KOG2038	988	consensus CAATT-binding transcription factor/60S r	85.35
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	84.66
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	84.62
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	84.2
KOG4653	982	consensus Uncharacterized conserved protein [Funct	83.86
KOG3678	832	consensus SARM protein (with sterile alpha and arm	83.52
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	83.37
PF05004	309	IFRD: Interferon-related developmental regulator (	83.12
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	82.68
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	82.2
COG5656	970	SXM1 Importin, protein involved in nuclear import	82.09
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	81.97
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	81.06
KOG2137	700	consensus Protein kinase [Signal transduction mech	80.36

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.3e-92  Score=685.97  Aligned_cols=456  Identities=41%  Similarity=0.647  Sum_probs=428.2

Q ss_pred             CCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchH-----HH---HHHHHHHHhccccccchh
Q 012448            7 MDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLE-----DT---LVVCLERIFKTKYGASLI   78 (463)
Q Consensus         7 ~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~-----~~---~~~vL~~il~~~~~~~l~   78 (463)
                      |+++++|+++|.++|+|||.+++-.+++++..++||++++.|+...|.++..     +.   ++.||+|+|++++|++++
T Consensus         1 aealalLfdaAfeeAhleeaqaehSVkealdlfeLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakegahla   80 (524)
T KOG4413|consen    1 AEALALLFDAAFEEAHLEEAQAEHSVKEALDLFELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEGAHLA   80 (524)
T ss_pred             CchHHHHHHHHHhhcCchhhhhHhHHHHhcccchhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccchhhc
Confidence            6899999999999999999999999999999999999999999874443322     23   666999999999999999


Q ss_pred             hchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448           79 PHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN  158 (463)
Q Consensus        79 ~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~  158 (463)
                      +||++-||+||.||+..||.|+|+++++++++.+.++..-.++++|++++++++.||+.+|.+||+.|++.+++|+.++.
T Consensus        81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa  160 (524)
T KOG4413|consen   81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA  160 (524)
T ss_pred             hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence            99999999999999999999999999999999875443366788999999999999999999999999999999999999


Q ss_pred             CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHH
Q 012448          159 GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYE  238 (463)
Q Consensus       159 ~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~e  238 (463)
                      |+++||+.+..+++++.++.+++|+++|+|||+++++|+++|++.+++|..||+++.++.|+++|.|+||++||+|+.++
T Consensus       161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte  240 (524)
T KOG4413|consen  161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE  240 (524)
T ss_pred             HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcc-hhhhhhhHHHHHHHhccccCCChh
Q 012448          239 LAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFID-ESSAKTVISAIDGRLGFLQSQDSD  317 (463)
Q Consensus       239 La~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~-~~~~k~~p~~l~~~f~~~~~~d~~  317 (463)
                      |+++.||.+|+.+.|+++.|+++|.+.++||+..-|++|+.|......+++++.. +.|.. ||.++++.|+|++++|++
T Consensus       241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicea-liiaidgsfEmiEmnDpd  319 (524)
T KOG4413|consen  241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEA-LIIAIDGSFEMIEMNDPD  319 (524)
T ss_pred             HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHH-HHHHHHhhHHhhhcCCch
Confidence            9999999999999999999999999999999999889998777665444666533 33555 999999999999999999


Q ss_pred             hhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHH
Q 012448          318 ECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLI  397 (463)
Q Consensus       318 ~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~  397 (463)
                      .+++|+||+|++||+++|+++++++.++.++|++.++|+...++++..++|||++|.+..|.+.++|.+..+|++++.+|
T Consensus       320 aieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli  399 (524)
T KOG4413|consen  320 AIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI  399 (524)
T ss_pred             HHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence            99999999999999999999999997789999999999999999999999999999999998889999889999999999


Q ss_pred             HHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhhhccchhHhhcCCCccCCC
Q 012448          398 YEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK  463 (463)
Q Consensus       398 ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K  463 (463)
                      |.+...|.+.+|+++|++++ |||||||||||+.+++|++|||++++|.++||||||++||++|++|
T Consensus       400 fdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaK  466 (524)
T KOG4413|consen  400 FDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAK  466 (524)
T ss_pred             HHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHH
Confidence            99999999999999999999 9999999999999999999999999999999999999999999987

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=100.00  E-value=1.1e-84  Score=695.51  Aligned_cols=433  Identities=32%  Similarity=0.502  Sum_probs=405.7

Q ss_pred             hHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhh
Q 012448           10 SNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGL   89 (463)
Q Consensus        10 ~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL   89 (463)
                      +..|...+.++++||+-+++-.+..+++.++.+.||+||++++  ++..+.+|.+|++||++..|..+.++|.++|++||
T Consensus         9 l~~l~~~~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~~--~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL   86 (503)
T PF10508_consen    9 LEELSSKAERLEALPELKTELSSSPFLERLPEPVLFDCLNTSN--REQVELICDILKRLLSALSPDSLLPQYQPFLQRGL   86 (503)
T ss_pred             HHHHhcccchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhcC--hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence            4678889999999999999999999999999999999999886  88999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCc
Q 012448           90 TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNK  169 (463)
Q Consensus        90 ~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~  169 (463)
                      +||++.||++++++++++++++   .. .++++.++++++.|+.||+++|.+|++.|+++|++++++++|++.+|+++.+
T Consensus        87 ~h~~~~Vr~l~l~~l~~~~~~~---~~-~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~  162 (503)
T PF10508_consen   87 THPSPKVRRLALKQLGRIARHS---EG-AAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLL  162 (503)
T ss_pred             cCCCHHHHHHHHHHHHHHhcCC---HH-HHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchH
Confidence            9999999999999999999988   77 8999999999999999999999999999999999999999999999999998


Q ss_pred             chhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHH
Q 012448          170 AATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFL  249 (463)
Q Consensus       170 ~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L  249 (463)
                      .  +|.+.+.++|+++|+|||+++++|+++|++++++|.++|+|+.+++||++ +|+|+|+||+|++++||+++||++||
T Consensus       163 ~--~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL  239 (503)
T PF10508_consen  163 S--KLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYL  239 (503)
T ss_pred             H--HHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHH
Confidence            8  99977766699999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             HhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchh-hhhhhHHHHHHHhccccCCChhhhhHHHHHHHh
Q 012448          250 SRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDES-SAKTVISAIDGRLGFLQSQDSDECESALEALGQ  328 (463)
Q Consensus       250 ~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~-~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~  328 (463)
                      +++|++++|++++.+.++||  |.++++++|+|++||++..+ +++ +...||.|++.+|++++++|++++++|+||||+
T Consensus       240 ~~~gi~~~L~~~l~~~~~dp--~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~  316 (503)
T PF10508_consen  240 EQQGIFDKLSNLLQDSEEDP--RLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQ  316 (503)
T ss_pred             HhCCHHHHHHHHHhccccCC--cccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence            99999999999999999999  55889999999999887653 222 455699999999999999999999999999999


Q ss_pred             hcCCHHHHHHHhhcCchhHHHHHHHHHhhccchh---hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCC
Q 012448          329 IGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGK---QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSS  405 (463)
Q Consensus       329 Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~---k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~  405 (463)
                      ||+|++||++|..+.++.++++++++++++++++   |+|+||||++||+.++.       .++++ +..++ +.||+++
T Consensus       317 igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~-------~~~~~-i~~~~-~~w~~~~  387 (503)
T PF10508_consen  317 IGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD-------RQDND-ILSIT-ESWYESL  387 (503)
T ss_pred             HhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC-------CchHH-HHHHH-HHHHHHh
Confidence            9999999999944349999999999999999987   99999999999987632       23444 66677 8899988


Q ss_pred             CCChhH-HHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhhhccchhHhhcCCCccCCC
Q 012448          406 KLTPSG-LFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK  463 (463)
Q Consensus       406 ~~~p~~-~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K  463 (463)
                      ++.|.. ++++++ |||||+|+|+|++|++||.||||+++|+++|||+|||+||++|++|
T Consensus       388 ~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K  447 (503)
T PF10508_consen  388 SGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTK  447 (503)
T ss_pred             cCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCH
Confidence            899999 999999 9999999999999999999999999999999999999999999998

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=4.5e-15  Score=156.25  Aligned_cols=284  Identities=13%  Similarity=0.154  Sum_probs=227.0

Q ss_pred             hHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---c-hhhchHHHHHHhhc-CCCHHHHHHHHHHHHHHHhCCchhH
Q 012448           41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---S-LIPHYMPFVQVGLT-ADSHSVKRLACKTVTCLLEDSDLEA  115 (463)
Q Consensus        41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~-l~~~~~~~l~~gL~-h~~~~Vr~Lal~~l~~i~~~~~~~~  115 (463)
                      .+.+...+.+.+  +...-.+...++++++....+   . +-..+.+-++.+|. +.+|.++--++|++.+|+...   .
T Consensus        68 ~~~~~~~~~S~~--~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt---s  142 (514)
T KOG0166|consen   68 LELMLAALYSDD--PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT---S  142 (514)
T ss_pred             hHHHHHHHhCCC--HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc---h
Confidence            677777777755  555556666888888665433   2 23367999999997 556999999999999999887   6


Q ss_pred             HHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCc-hhHHHHHHHH
Q 012448          116 SCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSS-LGRVRVLSLI  193 (463)
Q Consensus       116 ~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~-~vR~Rv~el~  193 (463)
                      . ..+.++++|.+|.++.|+.+++..|...|+-+|.+|+.+++.+ +.+.+.+++.  .|..++...+. ...+.+-=++
T Consensus       143 e-~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~--pLl~~l~~~~~~~~lRn~tW~L  219 (514)
T KOG0166|consen  143 E-QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALD--PLLRLLNKSDKLSMLRNATWTL  219 (514)
T ss_pred             h-hccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchH--HHHHHhccccchHHHHHHHHHH
Confidence            6 8889999999999999999999999999999999999999988 6888999988  77745443333 5777888999


Q ss_pred             HHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhh
Q 012448          194 VKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILR  272 (463)
Q Consensus       194 v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r  272 (463)
                      .++++.+.-......-+.+||.+...+.+ +|.-|..++.--++.|+. +++..+++.+.|++.+|++.+...+  +-++
T Consensus       220 sNlcrgk~P~P~~~~v~~iLp~L~~ll~~-~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~--~~v~  296 (514)
T KOG0166|consen  220 SNLCRGKNPSPPFDVVAPILPALLRLLHS-TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSS--PKVV  296 (514)
T ss_pred             HHHHcCCCCCCcHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCC--cccc
Confidence            99999996555555566899999999999 999999999999999997 9999999999999999999998643  2246


Q ss_pred             hhhhhHhhhhccccc--cchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhh
Q 012448          273 SRAIMISGRLLSKDD--SHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLL  341 (463)
Q Consensus       273 ~~aili~g~i~~f~~--~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~  341 (463)
                      +||++..|.|..-.+  +-..++.   +.+|.+.. +  +-.++..+++..|.||+++|+. +.+..+.+..
T Consensus       297 ~PaLRaiGNIvtG~d~QTq~vi~~---~~L~~l~~-l--l~~s~~~~ikkEAcW~iSNItAG~~~qiqaVid  362 (514)
T KOG0166|consen  297 TPALRAIGNIVTGSDEQTQVVINS---GALPVLSN-L--LSSSPKESIKKEACWTISNITAGNQEQIQAVID  362 (514)
T ss_pred             cHHHhhccceeeccHHHHHHHHhc---ChHHHHHH-H--hccCcchhHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            799999999887111  1222322   33444443 3  1236777899999999999998 7778877775

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.59  E-value=2.4e-12  Score=153.16  Aligned_cols=392  Identities=15%  Similarity=0.139  Sum_probs=262.3

Q ss_pred             HHHhhhhccCCCCCChHHHHHHH--hcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc----chhhchHHHHHH
Q 012448           14 LDSASDFAYHPGVQNDAAAKKFL--DRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA----SLIPHYMPFVQV   87 (463)
Q Consensus        14 ~~~~~~~a~~p~~~s~~~~~~~~--~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~----~l~~~~~~~l~~   87 (463)
                      +..-.+|+.-    +++ .+.++  ...-+|.|++.|.+.+  +..+..++.+|..+  ..+..    -+.....+.|+.
T Consensus        36 l~~Lr~Lak~----~~e-nR~~Ia~~aGaIP~LV~lL~sg~--~~vk~nAaaaL~nL--S~~e~nk~~Iv~~GaIppLV~  106 (2102)
T PLN03200         36 TARLLELAKT----REE-ARKAIGSHSQAMPLLVSLLRSGT--LGAKVNAAAVLGVL--CKEEDLRVKVLLGGCIPPLLS  106 (2102)
T ss_pred             HHHHHHHHhc----ChH-HHHHHHHccCcHHHHHHHHcCCC--HHHHHHHHHHHHHH--hcCHHHHHHHHHcCChHHHHH
Confidence            3334445544    543 35555  3667999999998766  77888888888887  44432    234667899999


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCC---chHHHHHHHHHHHHHhCCCCCc-ccc
Q 012448           88 GLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLING---NEEVATASMDAIKKLAGFPNGI-DII  163 (463)
Q Consensus        88 gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~---d~~va~~A~~~L~~lak~~~~l-~~l  163 (463)
                      .|++.++..|+.|++++..+..+..++.. -..+++..|.+|.++.++.++   |..+-+.|+.+|..++.++++. +.+
T Consensus       107 LL~sGs~eaKe~AA~AL~sLS~~~~~D~~-~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~I  185 (2102)
T PLN03200        107 LLKSGSAEAQKAAAEAIYAVSSGGLSDHV-GSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSAT  185 (2102)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHcCcchhhh-hhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHH
Confidence            99999999999999999999987521122 346778899999999999998   4456677889999999999987 677


Q ss_pred             ccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-h
Q 012448          164 FPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-I  242 (463)
Q Consensus       164 ~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t  242 (463)
                      ++.+.++  .|...+.+.++..+..+..++..+++++++..+.+++.|.++.++..|.+.+|.-+|-+|+-.|+.|+. +
T Consensus       186 IeaGaVp--~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s  263 (2102)
T PLN03200        186 LEAGGVD--ILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQS  263 (2102)
T ss_pred             HHcCCHH--HHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCC
Confidence            8999999  888899899999999999999999999999999999999999999999753778999999999999999 8


Q ss_pred             HHHHHHHHhcchHHHHHHHhcccccchh-------hhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCC-
Q 012448          243 QHSAEFLSRTTLLQLLCSLIGNSATETI-------LRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQ-  314 (463)
Q Consensus       243 ~~g~~~L~~~gi~~~L~~~i~~~~~dpl-------~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~-  314 (463)
                      ++..+.+.+.|++..|++.+.....+-.       .+..++.+.+-+              .++.+.++..+-+.+++. 
T Consensus       264 ~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNI--------------cgg~~~ll~~L~~ll~s~r  329 (2102)
T PLN03200        264 KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANI--------------CGGMSALILYLGELSESPR  329 (2102)
T ss_pred             HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHH--------------hCCchhhHHHHHHhhcccc
Confidence            9999999999999999999875332211       011111111111              111222232222222332 


Q ss_pred             ChhhhhHHHHHHHhh---cCCHHHH-HHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHH
Q 012448          315 DSDECESALEALGQI---GSSIQGA-TLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAE  390 (463)
Q Consensus       315 d~~~~~~A~dtlG~I---gss~eGk-~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e  390 (463)
                      |......+.|++.-+   ......+ +.+..  +.....+++...+.-....+.+...||+.+++..             
T Consensus       330 d~~~~ada~gALayll~l~d~~~~~~~~i~~--~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~-------------  394 (2102)
T PLN03200        330 SPAPIADTLGALAYALMVFDSSAESTRAFDP--TVIEQILVKLLKPRDTKLVQERIIEALASLYGNA-------------  394 (2102)
T ss_pred             hHHHHHHHHhhHHHHHHhcCCchhhhhhccc--cccHHHHHHHhCCCCCchhHHHHHHHHHHhcCCh-------------
Confidence            344444455555444   2211111 11111  1122222222221111112455566666655532             


Q ss_pred             HHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhhhccchhHhh
Q 012448          391 ESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTV  454 (463)
Q Consensus       391 ~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~~gfie~l  454 (463)
                       .+.+++++       .+....+.++. -+-.|.|..+-.-|+.++.+....+......|.+++|
T Consensus       395 -~l~~~L~~-------~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~L  451 (2102)
T PLN03200        395 -YLSRKLNH-------AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLL  451 (2102)
T ss_pred             -HHHHHHHh-------ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHH
Confidence             12333322       23345566777 5778999999999999998877765555444444444

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.47  E-value=1.2e-10  Score=139.01  Aligned_cols=419  Identities=13%  Similarity=0.084  Sum_probs=297.0

Q ss_pred             CCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc-----hhhch
Q 012448            7 MDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS-----LIPHY   81 (463)
Q Consensus         7 ~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-----l~~~~   81 (463)
                      +++.+..-+++..+.+- ...+++.-+.+++..-+|.|+..|.+.+  +..++.++..|+.+.  ....+     .....
T Consensus       415 ~~~~evQ~~Av~aL~~L-~~~~~e~~~aIi~~ggIp~LV~LL~s~s--~~iQ~~A~~~L~nLa--~~ndenr~aIieaGa  489 (2102)
T PLN03200        415 MATADVQEELIRALSSL-CCGKGGLWEALGGREGVQLLISLLGLSS--EQQQEYAVALLAILT--DEVDESKWAITAAGG  489 (2102)
T ss_pred             cCCHHHHHHHHHHHHHH-hCCCHHHHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHH--cCCHHHHHHHHHCCC
Confidence            44555555666654332 2227888999999999999999999865  677888888898883  33322     33467


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC--
Q 012448           82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG--  159 (463)
Q Consensus        82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~--  159 (463)
                      .+.|+..|.++++.+|+-|+|+++++..++   .. ....+.++|.++.++..|.+++..+.+.|+.+|..+.++.+.  
T Consensus       490 IP~LV~LL~s~~~~iqeeAawAL~NLa~~~---~q-ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~  565 (2102)
T PLN03200        490 IPPLVQLLETGSQKAKEDSATVLWNLCCHS---ED-IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT  565 (2102)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCc---HH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH
Confidence            999999999999999999999999998876   44 666777899999999999999999999999999999643220  


Q ss_pred             -----------------------------------c-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHH
Q 012448          160 -----------------------------------I-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSV  203 (463)
Q Consensus       160 -----------------------------------l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~  203 (463)
                                                         . +..-..+.++  .|.+++.+.++.+|-.++.++.+++.-+++.
T Consensus       566 I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~--~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~  643 (2102)
T PLN03200        566 ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALR--TLIQLLSSSKEETQEKAASVLADIFSSRQDL  643 (2102)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHH--HHHHHHcCCCHHHHHHHHHHHHHHhcCChHH
Confidence                                               0 0011345677  8888899999999999999999999999999


Q ss_pred             HHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh--hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhh
Q 012448          204 ASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE--IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGR  281 (463)
Q Consensus       204 ~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~--t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~  281 (463)
                      -+.++..|.++.++..|.+ .+.-++..+.--|..++.  +++...++++.|++..|++.+...  |+-+...++.+.+.
T Consensus       644 ~~avv~agaIpPLV~LLss-~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~--d~~v~e~Al~ALan  720 (2102)
T PLN03200        644 CESLATDEIINPCIKLLTN-NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS--SIEVAEQAVCALAN  720 (2102)
T ss_pred             HHHHHHcCCHHHHHHHHhc-CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC--ChHHHHHHHHHHHH
Confidence            9999999999999999999 888889999999999997  444457889999999999999764  33334566666666


Q ss_pred             hcccccc-chhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHH----HHhhcCchhHHHHHHHHHh
Q 012448          282 LLSKDDS-HMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGAT----LLLLCLPPAARHVIDAAFD  356 (463)
Q Consensus       282 i~~f~~~-~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~----~L~~~~~~~~~~~l~~~~~  356 (463)
                      +...++. ..+.   -..++|++++    ++.++.+..+..|.|+|.++++.-.--+    .++.  -..+..++...-.
T Consensus       721 Ll~~~e~~~ei~---~~~~I~~Lv~----lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~--~g~v~~l~~~L~~  791 (2102)
T PLN03200        721 LLSDPEVAAEAL---AEDIILPLTR----VLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQC--RGTVLALVDLLNS  791 (2102)
T ss_pred             HHcCchHHHHHH---hcCcHHHHHH----HHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHH--hCcHHHHHHHHhc
Confidence            6654332 2333   2344666555    5678999999999999999998433222    2222  1233333332222


Q ss_pred             hccchh-hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhC-CCCChhHHHHHHhcCCHHHHHHHHHHHHHh
Q 012448          357 RQGHGK-QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRS-SKLTPSGLFLSVLQQAAEIRLAGYRMITGL  434 (463)
Q Consensus       357 ~~~~~~-k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~-~~~~p~~~~~~~~qpF~elr~A~~~~l~~l  434 (463)
                      .-.... -.-+|++++.+...++...      .+    ..-| ..+.+. .+..|+  +.-+.---|+++-.|.++|..+
T Consensus       792 ~~~~~~~~~~al~~l~~l~~~~~~~~------~~----~~~~-~~~~e~p~~l~~l--~~~l~~~~p~~~~kai~il~~~  858 (2102)
T PLN03200        792 TDLDSSATSEALEALALLARTKGGAN------FS----HPPW-AVLAEVPSSLEPL--VRCLAEGHPLVQDKAIEILSRL  858 (2102)
T ss_pred             CCcchhhHHHHHHHHHHHHhhcccCC------CC----CCch-hhHHhccCchHHH--HHHHHcCChHHHHHHHHHHHHH
Confidence            211222 3357888888887542210      00    0112 111111 112222  2333466789999999999999


Q ss_pred             hcCchh--HHHhhhccchhHhhcCCCccC
Q 012448          435 VARPWC--LMELCSKQEIINTVTDASTEQ  461 (463)
Q Consensus       435 ~~~~Wg--~~~i~~~~gfie~lldr~~E~  461 (463)
                      |.-+-.  -..+.+.+|-|--|-||-.++
T Consensus       859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  887 (2102)
T PLN03200        859 CRDQPVVLGDLIANASKCISSLADRIINS  887 (2102)
T ss_pred             hccChhHHHHHHhcccchHHHHHHHHhhc
Confidence            986544  346678899888888875543

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=3.4e-11  Score=127.25  Aligned_cols=369  Identities=18%  Similarity=0.154  Sum_probs=275.1

Q ss_pred             HHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-----chhhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012448           32 AKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-----SLIPHYMPFVQVGLTADSHSVKRLACKTVTC  106 (463)
Q Consensus        32 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-----~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~  106 (463)
                      ..+.+..-.+|.++.||... +.+..+-.++-+|..+  +....     .+..+..+.+..+|.+|++.|++-|.|++|+
T Consensus       102 i~~vi~~G~v~~lV~~l~~~-~~~~lq~eAAWaLTnI--Asgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgN  178 (514)
T KOG0166|consen  102 IDEVIQSGVVPRLVEFLSRD-DNPTLQFEAAWALTNI--ASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGN  178 (514)
T ss_pred             HHHHHHcCcHHHHHHHHccC-CChhHHHHHHHHHHHH--hcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhc
Confidence            45555569999999999743 3477777777788888  44333     2344558889999999999999999999999


Q ss_pred             HHhCCchhHHHHHHHhhccCcHHHHHHhhcCCch-HHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhcCCch
Q 012448          107 LLEDSDLEASCALQLLIDYEIYPLLLDCLINGNE-EVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQCSSL  184 (463)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~-~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~~~~~  184 (463)
                      ++.++   .. +...+.+.|++..++..+..++. +.-+.+.-+|++++++.. --+.-.-...++  .|..++-+.|..
T Consensus       179 Iagds---~~-~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp--~L~~ll~~~D~~  252 (514)
T KOG0166|consen  179 IAGDS---PD-CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP--ALLRLLHSTDEE  252 (514)
T ss_pred             cccCC---hH-HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH--HHHHHHhcCCHH
Confidence            99988   77 99999999999999999988886 888999999999999883 211111123445  566688899999


Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhc
Q 012448          185 GRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIG  263 (463)
Q Consensus       185 vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~  263 (463)
                      |..=+|-.+..++..+.|.-++++++|..++++..|.. ...-++.-|+-.+..++. +..-.+-+.+.|.+..|..++.
T Consensus       253 Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~-~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~  331 (514)
T KOG0166|consen  253 VLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH-SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLS  331 (514)
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC-CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhc
Confidence            99999999999999999999999999999999999999 998899999999999988 8888899999999999999999


Q ss_pred             ccccchhhhhhhhhHhhhhcccccc---chhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC--CHHHHHH
Q 012448          264 NSATETILRSRAIMISGRLLSKDDS---HMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS--SIQGATL  338 (463)
Q Consensus       264 ~~~~dpl~r~~aili~g~i~~f~~~---~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs--s~eGk~~  338 (463)
                      .+..+-+ ++-|--+.+=|.+ |+.   -+++|   ..-+|..++    .++..|-.++--|.|+++++.+  +.+--..
T Consensus       332 ~s~~~~i-kkEAcW~iSNItA-G~~~qiqaVid---a~l~p~Li~----~l~~~ef~~rKEAawaIsN~ts~g~~~qi~y  402 (514)
T KOG0166|consen  332 SSPKESI-KKEACWTISNITA-GNQEQIQAVID---ANLIPVLIN----LLQTAEFDIRKEAAWAISNLTSSGTPEQIKY  402 (514)
T ss_pred             cCcchhH-HHHHHHHHHHhhc-CCHHHHHHHHH---cccHHHHHH----HHhccchHHHHHHHHHHHhhcccCCHHHHHH
Confidence            7776664 5556655666665 332   13342   244666665    4577888899999999999987  4444455


Q ss_pred             HhhcCchhHHHHHHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh
Q 012448          339 LLLCLPPAARHVIDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL  417 (463)
Q Consensus       339 L~~~~~~~~~~~l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~  417 (463)
                      |..+  +..++++...  .....+ -..+|+++.+|+.......    +.+.+. +..++ |...+   ...++.+.+--
T Consensus       403 Lv~~--giI~plcdlL--~~~D~~ii~v~Ld~l~nil~~~e~~~----~~~~n~-~~~~I-Ee~gg---ldkiE~LQ~he  469 (514)
T KOG0166|consen  403 LVEQ--GIIKPLCDLL--TCPDVKIILVALDGLENILKVGEAEK----NRGTNP-LAIMI-EEAGG---LDKIENLQSHE  469 (514)
T ss_pred             HHHc--CCchhhhhcc--cCCChHHHHHHHHHHHHHHHHHHHhc----cccccH-HHHHH-HHccC---hhHHHHhhccc
Confidence            5553  3555555544  222222 6689999999999762110    000022 55666 76555   45555333222


Q ss_pred             cCCHHHHHHHHHHHHHh
Q 012448          418 QQAAEIRLAGYRMITGL  434 (463)
Q Consensus       418 qpF~elr~A~~~~l~~l  434 (463)
                        =.||.-.||.++..=
T Consensus       470 --n~~Iy~~A~~II~~y  484 (514)
T KOG0166|consen  470 --NEEIYKKAYKIIDTY  484 (514)
T ss_pred             --cHHHHHHHHHHHHHh
Confidence              268888888887654

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.38  E-value=4.8e-10  Score=120.78  Aligned_cols=315  Identities=16%  Similarity=0.209  Sum_probs=226.5

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-ccc
Q 012448           85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DII  163 (463)
Q Consensus        85 l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l  163 (463)
                      +-.||+..+...-.++|..+.++++..   .  ...+  .+++.+.+..+|..|+..|..-+.+.|.++++++.+. +.+
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~---~--~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~  115 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSAL---S--PDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLL  115 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhcc---C--HHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHh
Confidence            778888888888899999999999865   2  2222  5578899999999999999999999999999999875 788


Q ss_pred             ccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-h
Q 012448          164 FPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-I  242 (463)
Q Consensus       164 ~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t  242 (463)
                      .+.++++  .+...+...|..|.--+..++.+++++++.. +.+.++++.+.+...+.. .|..+|..+.|++.++++ +
T Consensus       116 ~~~~l~~--~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S  191 (503)
T PF10508_consen  116 VDNELLP--LIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHS  191 (503)
T ss_pred             cCccHHH--HHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcC
Confidence            8899988  7777888999999999999999999987655 567788888888888877 688889999999999998 9


Q ss_pred             HHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCC--Chhhhh
Q 012448          243 QHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQ--DSDECE  320 (463)
Q Consensus       243 ~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~--d~~~~~  320 (463)
                      +..+++..+.|+++++++.+.+  +|.+++.-++-+.+-+.-...-..|+.+  ...++.+.+.+.+.-+++  .....+
T Consensus       192 ~~~~~~~~~sgll~~ll~eL~~--dDiLvqlnalell~~La~~~~g~~yL~~--~gi~~~L~~~l~~~~~dp~~~~~~l~  267 (503)
T PF10508_consen  192 PEAAEAVVNSGLLDLLLKELDS--DDILVQLNALELLSELAETPHGLQYLEQ--QGIFDKLSNLLQDSEEDPRLSSLLLP  267 (503)
T ss_pred             HHHHHHHHhccHHHHHHHHhcC--ccHHHHHHHHHHHHHHHcChhHHHHHHh--CCHHHHHHHHHhccccCCcccchhhh
Confidence            9999999999999999999987  9999988888777776653233455422  122334444332222222  223557


Q ss_pred             HHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccc---hhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHH
Q 012448          321 SALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGH---GKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLI  397 (463)
Q Consensus       321 ~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~---~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~  397 (463)
                      ..+..+|.++.. +..+++..     ...++...++...+   ..+..|+++|+.|-...  +..+.+.......+.+.+
T Consensus       268 g~~~f~g~la~~-~~~~v~~~-----~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~--~G~~~L~~~~~~~~~~~l  339 (503)
T PF10508_consen  268 GRMKFFGNLARV-SPQEVLEL-----YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV--EGKQLLLQKQGPAMKHVL  339 (503)
T ss_pred             hHHHHHHHHHhc-ChHHHHHH-----HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH--HHHHHHHhhcchHHHHHH
Confidence            777888888885 33444433     34555555554443   33899999999987644  444444222222244343


Q ss_pred             HHHHhhCCCCChhHHHHHHhcCCHHHHHHHHHHHHHh
Q 012448          398 YEVASRSSKLTPSGLFLSVLQQAAEIRLAGYRMITGL  434 (463)
Q Consensus       398 ye~~~~~~~~~p~~~~~~~~qpF~elr~A~~~~l~~l  434 (463)
                       .+.+...+           ..=.|+|+.+++-|..+
T Consensus       340 -~~~~~~~~-----------~~~~~lk~r~l~al~~i  364 (503)
T PF10508_consen  340 -KAIGDAIK-----------SGSTELKLRALHALASI  364 (503)
T ss_pred             -HHHHHHhc-----------CCchHHHHHHHHHHHHH
Confidence             44444222           33445555555555555

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=6.7e-09  Score=104.61  Aligned_cols=313  Identities=17%  Similarity=0.122  Sum_probs=229.0

Q ss_pred             CCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhc----cccccchhhchHHHHHHhhcCCCHHHHHHHH
Q 012448           26 VQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFK----TKYGASLIPHYMPFVQVGLTADSHSVKRLAC  101 (463)
Q Consensus        26 ~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~----~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal  101 (463)
                      .|+++.=+..|+.-.+|.|++.|++++  ...+.-+|-.+..+=-    -+-.++.-|++.+.|+.-...+++.||..+-
T Consensus       195 Ths~EnRr~LV~aG~lpvLVsll~s~d--~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~  272 (550)
T KOG4224|consen  195 THSRENRRVLVHAGGLPVLVSLLKSGD--LDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAG  272 (550)
T ss_pred             hhhhhhhhhhhccCCchhhhhhhccCC--hhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHH
Confidence            468889999999999999999999988  5555555554433310    1112345567899999999999999999999


Q ss_pred             HHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcC
Q 012448          102 KTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQC  181 (463)
Q Consensus       102 ~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~  181 (463)
                      .+++.+....    . -..-++++|-+|+++..|++|-...-....-.+..|+-|+-.--.|.+++++.  -|.+++...
T Consensus       273 lALrnlasdt----~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~--pLVrlL~~~  345 (550)
T KOG4224|consen  273 LALRNLASDT----E-YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLR--PLVRLLRAG  345 (550)
T ss_pred             HHHhhhcccc----h-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchh--HHHHHHhcC
Confidence            9999987654    2 44567889999999999999998888888888999998885445677888877  777666655


Q ss_pred             -CchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHH
Q 012448          182 -SSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCS  260 (463)
Q Consensus       182 -~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~  260 (463)
                       |+.++|-+-+.+-++|..|+..-..+.++|.++++...+.| .-+-+|--.--++..|+-...--.++...|+++.|+.
T Consensus       346 dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD-~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp  424 (550)
T KOG4224|consen  346 DNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD-GPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIP  424 (550)
T ss_pred             CchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc-CChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeec
Confidence             55699999999999999999999999999999999999989 8888999888999999999999999999999999998


Q ss_pred             HhcccccchhhhhhhhhHhhhhcccccc--c-hh---cchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCC-H
Q 012448          261 LIGNSATETILRSRAIMISGRLLSKDDS--H-MF---IDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSS-I  333 (463)
Q Consensus       261 ~i~~~~~dpl~r~~aili~g~i~~f~~~--~-~~---~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss-~  333 (463)
                      +..+..+.--..  +  ....+-++++.  + +|   .|+|. .+.-.++   .++..+.+.+..-.|.||+-++.-. .
T Consensus       425 ~t~s~s~Ev~gN--a--AaAL~Nlss~v~~YarviEawd~P~-~gi~g~L---~Rfl~S~~~tf~hia~wTI~qLle~h~  496 (550)
T KOG4224|consen  425 WTGSESEEVRGN--A--AAALINLSSDVEHYARVIEAWDHPV-QGIQGRL---ARFLASHELTFRHIARWTIQQLLEDHD  496 (550)
T ss_pred             ccCccchhhccc--H--HHHHHhhhhhhHHHHHHHHHhcCcc-hhHHHHH---HHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence            876544322111  1  12222222232  1 22   34443 1122222   2456788889999999999877652 2


Q ss_pred             HHHHHHhhcCchhHHHHHHHHHhh
Q 012448          334 QGATLLLLCLPPAARHVIDAAFDR  357 (463)
Q Consensus       334 eGk~~L~~~~~~~~~~~l~~~~~~  357 (463)
                      .-...+.+. .+..-+.++.++.+
T Consensus       497 ~~~~~~i~~-~ddii~~~~~~~~r  519 (550)
T KOG4224|consen  497 LPLTAFIQS-SDDIIELLNDIVAR  519 (550)
T ss_pred             ccHHHHHhC-chhHHHHHHHHHHH
Confidence            222333333 34444444444444

>PRK09687 putative lyase; Provisional

Probab=98.91  E-value=1.7e-07  Score=93.85  Aligned_cols=235  Identities=9%  Similarity=0.020  Sum_probs=163.1

Q ss_pred             HHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 012448           30 AAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLE  109 (463)
Q Consensus        30 ~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~  109 (463)
                      ....+..++...+.|+..|.+.+  ...+..++..|..+    ..    +...+.+...++++++.||..+++.++.+-.
T Consensus        14 ~~~~~~~~~~~~~~L~~~L~d~d--~~vR~~A~~aL~~~----~~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~   83 (280)
T PRK09687         14 YSLYSQCKKLNDDELFRLLDDHN--SLKRISSIRVLQLR----GG----QDVFRLAIELCSSKNPIERDIGADILSQLGM   83 (280)
T ss_pred             HHHHHHHhhccHHHHHHHHhCCC--HHHHHHHHHHHHhc----Cc----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            34455567778899999998766  67788888888766    22    3456667777899999999999999999643


Q ss_pred             CCchhHHHHHHHhhccCcHHHHHHh-hcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHH
Q 012448          110 DSDLEASCALQLLIDYEIYPLLLDC-LINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVR  188 (463)
Q Consensus       110 ~~~~~~~~~~~~~~~~~l~~~li~~-l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~R  188 (463)
                      ..    . .     +...++.+... +.|++..|-..|+.+|..++....    ...+..+.  .+...+.+.+..||+-
T Consensus        84 ~~----~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~--~l~~~~~D~~~~VR~~  147 (280)
T PRK09687         84 AK----R-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVE--QSQITAFDKSTNVRFA  147 (280)
T ss_pred             Cc----c-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHH--HHHHHhhCCCHHHHHH
Confidence            22    1 0     12456666654 789999999999999998864321    12233444  5555566778888888


Q ss_pred             HHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhccccc
Q 012448          189 VLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSAT  267 (463)
Q Consensus       189 v~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~  267 (463)
                      +...+.++.  ++         ..++.++..|++ +|.-||..|++-|..+.. ++         .+++.|+..+.  +.
T Consensus       148 a~~aLg~~~--~~---------~ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~--D~  204 (280)
T PRK09687        148 VAFALSVIN--DE---------AAIPLLINLLKD-PNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQ--DK  204 (280)
T ss_pred             HHHHHhccC--CH---------HHHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhc--CC
Confidence            777765553  22         356777888889 888999999999888833 32         45556666664  35


Q ss_pred             chhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448          268 ETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS  331 (463)
Q Consensus       268 dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs  331 (463)
                      |+.+|..++...|.+..            ...+|.+++.+    +.++  ..-.|+++||.||.
T Consensus       205 ~~~VR~~A~~aLg~~~~------------~~av~~Li~~L----~~~~--~~~~a~~ALg~ig~  250 (280)
T PRK09687        205 NEEIRIEAIIGLALRKD------------KRVLSVLIKEL----KKGT--VGDLIIEAAGELGD  250 (280)
T ss_pred             ChHHHHHHHHHHHccCC------------hhHHHHHHHHH----cCCc--hHHHHHHHHHhcCC
Confidence            77788777777777654            13466666633    3443  56679999999998

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.89  E-value=5.5e-06  Score=92.11  Aligned_cols=396  Identities=15%  Similarity=0.162  Sum_probs=261.9

Q ss_pred             hHHHHHHhhh-hccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc----chhhchHHH
Q 012448           10 SNQLLDSASD-FAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA----SLIPHYMPF   84 (463)
Q Consensus        10 ~~~~~~~~~~-~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~----~l~~~~~~~   84 (463)
                      .++|+++|.. +-|.  +-+...-...++...++.|+.||+.++  .+..-.+..+|+++  +..+.    -....+.+.
T Consensus       262 QeqLlrv~~~lLlNL--Aed~~ve~kM~~~~iV~~Lv~~Ldr~n--~ellil~v~fLkkL--Si~~ENK~~m~~~giV~k  335 (708)
T PF05804_consen  262 QEQLLRVAFYLLLNL--AEDPRVELKMVNKGIVSLLVKCLDREN--EELLILAVTFLKKL--SIFKENKDEMAESGIVEK  335 (708)
T ss_pred             HHHHHHHHHHHHHHH--hcChHHHHHHHhcCCHHHHHHHHcCCC--HHHHHHHHHHHHHH--cCCHHHHHHHHHcCCHHH
Confidence            4678888876 4444  122355667789999999999999876  44444455688888  33332    235567899


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccc
Q 012448           85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIF  164 (463)
Q Consensus        85 l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~  164 (463)
                      |.+-+..+++.++..+++.+.++.-+.    . +...+++.|++|.++..+.+++  ....++.+|..++...++-..+-
T Consensus       336 L~kLl~s~~~~l~~~aLrlL~NLSfd~----~-~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~  408 (708)
T PF05804_consen  336 LLKLLPSENEDLVNVALRLLFNLSFDP----E-LRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFA  408 (708)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhCcCH----H-HHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHh
Confidence            999999999999999999999975543    4 7788999999999999999876  55678999999998765544444


Q ss_pred             cCCCcchhhHhhHhhc-CCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhH
Q 012448          165 PADNKAATDLGNLVAQ-CSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQ  243 (463)
Q Consensus       165 ~~~~~~~~~L~~~~~~-~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~  243 (463)
                      ..+.++  .+.+.+.. .++.+..-+..+++++|... ..++.+.+.|-|+.++.....+.|.++    +-+++.++..+
T Consensus       409 ~TdcIp--~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~lL----lKlIRNiS~h~  481 (708)
T PF05804_consen  409 YTDCIP--QLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDPLL----LKLIRNISQHD  481 (708)
T ss_pred             hcchHH--HHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccHHH----HHHHHHHHhcC
Confidence            556676  66655554 46667778889999999665 555777777778888887555589774    46999999965


Q ss_pred             HHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccc--cccchhcchhh-hhhhHHHHHHHhccccCCChhhhh
Q 012448          244 HSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSK--DDSHMFIDESS-AKTVISAIDGRLGFLQSQDSDECE  320 (463)
Q Consensus       244 ~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f--~~~~~~~~~~~-~k~~p~~l~~~f~~~~~~d~~~~~  320 (463)
                      ...+-+. .+.+..|++.+...+++.+    .+=+.|.+.--  .+. .|. +.+ ..++.+++...+.--.+. +++.-
T Consensus       482 ~~~k~~f-~~~i~~L~~~v~~~~~ee~----~vE~LGiLaNL~~~~l-d~~-~ll~~~~llp~L~~~L~~g~~~-dDl~L  553 (708)
T PF05804_consen  482 GPLKELF-VDFIGDLAKIVSSGDSEEF----VVECLGILANLTIPDL-DWA-QLLQEYNLLPWLKDLLKPGASE-DDLLL  553 (708)
T ss_pred             chHHHHH-HHHHHHHHHHhhcCCcHHH----HHHHHHHHHhcccCCc-CHH-HHHHhCCHHHHHHHHhCCCCCC-hHHHH
Confidence            3333332 2466667777766554333    23334443310  121 110 112 224556666654322233 34555


Q ss_pred             HHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHH
Q 012448          321 SALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYE  399 (463)
Q Consensus       321 ~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye  399 (463)
                      -++=.+|.+++..+.+..|.+  .+....++..+....-+.- =+..+.+|-.++..+  +        +-   ..++.+
T Consensus       554 E~Vi~~gtla~d~~~A~lL~~--sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~--~--------tr---~~ll~~  618 (708)
T PF05804_consen  554 EVVILLGTLASDPECAPLLAK--SGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHE--E--------TR---EVLLKE  618 (708)
T ss_pred             HHHHHHHHHHCCHHHHHHHHh--CChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcCh--H--------HH---HHHHhc
Confidence            566788999999999999987  4566666666655544433 566677777777654  2        11   112211


Q ss_pred             HHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcC--chhHH----Hh-hhccchhHhhc
Q 012448          400 VASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVAR--PWCLM----EL-CSKQEIINTVT  455 (463)
Q Consensus       400 ~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~--~Wg~~----~i-~~~~gfie~ll  455 (463)
                             ......++.+. -+=+++|--+=..|.-|+.+  .|+-+    .+ ..+..++|-+-
T Consensus       619 -------~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~  675 (708)
T PF05804_consen  619 -------TEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMVE  675 (708)
T ss_pred             -------cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHh
Confidence                   23446777787 77899999998999888877  89854    12 23455555553

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.75  E-value=1.2e-06  Score=94.01  Aligned_cols=290  Identities=17%  Similarity=0.175  Sum_probs=188.5

Q ss_pred             CChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448           39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA  118 (463)
Q Consensus        39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~  118 (463)
                      +-.+.++..+.+++  ...+..+-..+..+...  ..++.--....++.-|+|+++.+|.+|++.++++..     .. .
T Consensus        42 ~~~~~vi~l~~s~~--~~~Krl~yl~l~~~~~~--~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-----~~-~  111 (526)
T PF01602_consen   42 FLFMEVIKLISSKD--LELKRLGYLYLSLYLHE--DPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT-----PE-M  111 (526)
T ss_dssp             STHHHHHCTCSSSS--HHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S-----HH-H
T ss_pred             hHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc-----cc-h
Confidence            55677778887655  44555555577777443  333444478899999999999999999999999752     23 4


Q ss_pred             HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448          119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS  198 (463)
Q Consensus       119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~  198 (463)
                      ++     .+++.|..++.+++..|.+.|+-++.++.+..|.+   ++....+  .+.+.+..+|..|+.-++.++.++ +
T Consensus       112 ~~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~~~~--~l~~lL~d~~~~V~~~a~~~l~~i-~  180 (526)
T PF01602_consen  112 AE-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDELIP--KLKQLLSDKDPSVVSAALSLLSEI-K  180 (526)
T ss_dssp             HH-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGGHHH--HHHHHTTHSSHHHHHHHHHHHHHH-H
T ss_pred             hh-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHHHHH--HHhhhccCCcchhHHHHHHHHHHH-c
Confidence            43     36888899999999999999999999998776542   2222455  777788888999999999999999 7


Q ss_pred             cCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhh
Q 012448          199 VSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIM  277 (463)
Q Consensus       199 ~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ail  277 (463)
                      .+++....+ -..+++.+.+.+.. .|..+|.+++.++..++. .+....   +..++..+...+.+  .+|-+.--+  
T Consensus       181 ~~~~~~~~~-~~~~~~~L~~~l~~-~~~~~q~~il~~l~~~~~~~~~~~~---~~~~i~~l~~~l~s--~~~~V~~e~--  251 (526)
T PF01602_consen  181 CNDDSYKSL-IPKLIRILCQLLSD-PDPWLQIKILRLLRRYAPMEPEDAD---KNRIIEPLLNLLQS--SSPSVVYEA--  251 (526)
T ss_dssp             CTHHHHTTH-HHHHHHHHHHHHTC-CSHHHHHHHHHHHTTSTSSSHHHHH---HHHHHHHHHHHHHH--HHHHHHHHH--
T ss_pred             cCcchhhhh-HHHHHHHhhhcccc-cchHHHHHHHHHHHhcccCChhhhh---HHHHHHHHHHHhhc--cccHHHHHH--
Confidence            777664321 12456666666677 999999999999999988 333321   15677777777762  222211011  


Q ss_pred             HhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhh
Q 012448          278 ISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDR  357 (463)
Q Consensus       278 i~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~  357 (463)
                       ...+      +++...+-  ..-.+++.+..++.++|+.++-+|++++.+|+...  ...+..      .++...+...
T Consensus       252 -~~~i------~~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~~------~~~~~~~l~~  314 (526)
T PF01602_consen  252 -IRLI------IKLSPSPE--LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVFN------QSLILFFLLY  314 (526)
T ss_dssp             -HHHH------HHHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHGT------HHHHHHHHHC
T ss_pred             -HHHH------HHhhcchH--HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhhh------hhhhhheecC
Confidence             1111      11111100  01123333444667999999999999999999865  233321      1122222222


Q ss_pred             ccc-hhhHhHHhhhHHHhc
Q 012448          358 QGH-GKQLAALHGLANIAG  375 (463)
Q Consensus       358 ~~~-~~k~r~L~al~~Il~  375 (463)
                      -.+ ..|.++++.+..+..
T Consensus       315 ~~d~~Ir~~~l~lL~~l~~  333 (526)
T PF01602_consen  315 DDDPSIRKKALDLLYKLAN  333 (526)
T ss_dssp             SSSHHHHHHHHHHHHHH--
T ss_pred             CCChhHHHHHHHHHhhccc
Confidence            222 228889998888876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.72  E-value=4.1e-07  Score=97.63  Aligned_cols=262  Identities=15%  Similarity=0.154  Sum_probs=180.0

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL  119 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~  119 (463)
                      ..+.+..-|++.|  +..+..+--+|..+    ...++++.+.+.+..+|.|++|.||.-|+-++.++.+..   ..   
T Consensus        80 ~~n~l~kdl~~~n--~~~~~lAL~~l~~i----~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~---p~---  147 (526)
T PF01602_consen   80 IINSLQKDLNSPN--PYIRGLALRTLSNI----RTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD---PD---  147 (526)
T ss_dssp             HHHHHHHHHCSSS--HHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC---HC---
T ss_pred             HHHHHHHhhcCCC--HHHHHHHHhhhhhh----cccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC---HH---
Confidence            4455666677665  55554444466665    477889999999999999999999999999999998765   32   


Q ss_pred             HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhc
Q 012448          120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSV  199 (463)
Q Consensus       120 ~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~  199 (463)
                       .+.+. +++.+...+.|++.+|...|+.++..+ ++++....-+-+....  .|.+.+...++-+++.+..++..++..
T Consensus       148 -~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~--~L~~~l~~~~~~~q~~il~~l~~~~~~  222 (526)
T PF01602_consen  148 -LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIR--ILCQLLSDPDPWLQIKILRLLRRYAPM  222 (526)
T ss_dssp             -CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHH--HHHHHHTCCSHHHHHHHHHHHTTSTSS
T ss_pred             -HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHH--HhhhcccccchHHHHHHHHHHHhcccC
Confidence             22333 788889999999999999999999999 5444321111122333  566566889999999999999999999


Q ss_pred             CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHh
Q 012448          200 SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMIS  279 (463)
Q Consensus       200 S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~  279 (463)
                      +++....   ..+++.+...+.+ .+.-|...|+.++..+...+.     .-+.+++.|...+.  ..||-+|--++-..
T Consensus       223 ~~~~~~~---~~~i~~l~~~l~s-~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~--s~~~nvr~~~L~~L  291 (526)
T PF01602_consen  223 EPEDADK---NRIIEPLLNLLQS-SSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLS--SSDPNVRYIALDSL  291 (526)
T ss_dssp             SHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHT--SSSHHHHHHHHHHH
T ss_pred             ChhhhhH---HHHHHHHHHHhhc-cccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhh--cccchhehhHHHHH
Confidence            8887632   3577788888878 888899999999998888666     55667778888887  45553342222222


Q ss_pred             hhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHH
Q 012448          280 GRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLL  339 (463)
Q Consensus       280 g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L  339 (463)
                      ..+...       ..+... .+...  +|-+..+.|.+++..|++.+..++....-+..+
T Consensus       292 ~~l~~~-------~~~~v~-~~~~~--~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il  341 (526)
T PF01602_consen  292 SQLAQS-------NPPAVF-NQSLI--LFFLLYDDDPSIRKKALDLLYKLANESNVKEIL  341 (526)
T ss_dssp             HHHCCH-------CHHHHG-THHHH--HHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred             HHhhcc-------cchhhh-hhhhh--hheecCCCChhHHHHHHHHHhhcccccchhhHH
Confidence            222221       011111 21211  222334889999999999999999855444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PRK09687 putative lyase; Provisional

Probab=98.72  E-value=5.8e-07  Score=89.99  Aligned_cols=196  Identities=11%  Similarity=0.037  Sum_probs=143.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448           82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID  161 (463)
Q Consensus        82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~  161 (463)
                      .++|...|.|++..||..++++++.+   .   .         +.+++.+...+.++|..+...|+.+|..|......  
T Consensus        25 ~~~L~~~L~d~d~~vR~~A~~aL~~~---~---~---------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--   87 (280)
T PRK09687         25 DDELFRLLDDHNSLKRISSIRVLQLR---G---G---------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--   87 (280)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhc---C---c---------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence            77888999999999999999999874   2   1         24677777888999999999999999999754322  


Q ss_pred             ccccCCCcchhhHhhH-hhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHH
Q 012448          162 IIFPADNKAATDLGNL-VAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELA  240 (463)
Q Consensus       162 ~l~~~~~~~~~~L~~~-~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa  240 (463)
                         ....++  .|... ....+..||..+...+.++.+....-     ...++..+...+.+ +|.-||..++.-|.++.
T Consensus        88 ---~~~a~~--~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D-~~~~VR~~a~~aLg~~~  156 (280)
T PRK09687         88 ---QDNVFN--ILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFD-KSTNVRFAVAFALSVIN  156 (280)
T ss_pred             ---hHHHHH--HHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhC-CCHHHHHHHHHHHhccC
Confidence               123444  56544 45678899999999999886432211     11244556667888 89999999999886543


Q ss_pred             hhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhh
Q 012448          241 EIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECE  320 (463)
Q Consensus       241 ~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~  320 (463)
                                ....++.|+..+.+  .|+.+|..++...|.+.+.        .  ....|.++    ..+.+.+..++.
T Consensus       157 ----------~~~ai~~L~~~L~d--~~~~VR~~A~~aLg~~~~~--------~--~~~~~~L~----~~L~D~~~~VR~  210 (280)
T PRK09687        157 ----------DEAAIPLLINLLKD--PNGDVRNWAAFALNSNKYD--------N--PDIREAFV----AMLQDKNEEIRI  210 (280)
T ss_pred             ----------CHHHHHHHHHHhcC--CCHHHHHHHHHHHhcCCCC--------C--HHHHHHHH----HHhcCCChHHHH
Confidence                      23467788888874  7778998898888887430        0  11233333    355788999999


Q ss_pred             HHHHHHHhhcC
Q 012448          321 SALEALGQIGS  331 (463)
Q Consensus       321 ~A~dtlG~Igs  331 (463)
                      .|+++||.+|.
T Consensus       211 ~A~~aLg~~~~  221 (280)
T PRK09687        211 EAIIGLALRKD  221 (280)
T ss_pred             HHHHHHHccCC
Confidence            99999999987

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=98.71  E-value=1.7e-06  Score=86.96  Aligned_cols=406  Identities=14%  Similarity=0.093  Sum_probs=276.6

Q ss_pred             CCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHH-HHHHHHHHHhcccccc---chhhch
Q 012448            6 SMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLED-TLVVCLERIFKTKYGA---SLIPHY   81 (463)
Q Consensus         6 ~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~-~~~~vL~~il~~~~~~---~l~~~~   81 (463)
                      -.+|+++-+++-.+|-.+...-...-...+.+....|.++.-+.+..  ++.-+ .++-+|..+-+-....   .+...-
T Consensus        81 ~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q--~~mlqfEAaWalTNiaSGtt~QTkvVvd~~A  158 (526)
T COG5064          81 FSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQ--RDMLQFEAAWALTNIASGTTQQTKVVVDAGA  158 (526)
T ss_pred             hhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcc--hhHHHHHHHHHHhhhccCcccceEEEEeCCc
Confidence            35788888888888887755544445667777888888888885433  23222 3333777774322221   234455


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCch--HHHHHHHHHHHHHhCCCC-
Q 012448           82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNE--EVATASMDAIKKLAGFPN-  158 (463)
Q Consensus        82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~--~va~~A~~~L~~lak~~~-  158 (463)
                      .+.+..-|..++..||+-+.|++|.++..+   .. ....+.+.|.+..++..+.+...  ++-+.|.=.|+.+++-.+ 
T Consensus       159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS---~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP  234 (526)
T COG5064         159 VPLFIQLLSSTEDDVREQAVWALGNIAGDS---EG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNP  234 (526)
T ss_pred             hHHHHHHHcCchHHHHHHHHHHhccccCCc---hh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCC
Confidence            888899999999999999999999999877   66 88899999999999988877655  888899999999976542 


Q ss_pred             --CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHH
Q 012448          159 --GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELL  236 (463)
Q Consensus       159 --~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell  236 (463)
                        .-..+.  ..++  .|.+++-..|..+-.-+|=.+..++-.+.|..+++.+.|+-..++..|.+ +|..+|--++-.+
T Consensus       235 ~P~w~~is--qalp--iL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~-~sa~iqtPalR~v  309 (526)
T COG5064         235 PPDWSNIS--QALP--ILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH-ESAKIQTPALRSV  309 (526)
T ss_pred             CCchHHHH--HHHH--HHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC-ccccccCHHHHhh
Confidence              111111  2345  67778888999999999999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccc---hhcchhhhhhhHHHHHHHhcccc
Q 012448          237 YELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSH---MFIDESSAKTVISAIDGRLGFLQ  312 (463)
Q Consensus       237 ~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~---~~~~~~~~k~~p~~l~~~f~~~~  312 (463)
                      ..++. +..--+-+.+.|.+..+-.++.+.+++  +|+.+--..+-|-+ |+.-   ++||   ..-.|++++    +++
T Consensus       310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~--irKEaCWTiSNITA-Gnteqiqavid---~nliPpLi~----lls  379 (526)
T COG5064         310 GNIVTGSDDQTQVIINCGALKAFRSLLSSPKEN--IRKEACWTISNITA-GNTEQIQAVID---ANLIPPLIH----LLS  379 (526)
T ss_pred             cCeeecCccceehheecccHHHHHHHhcChhhh--hhhhhheeeccccc-CCHHHHHHHHh---cccchHHHH----HHH
Confidence            99888 666678899999999999988776662  24444333333333 2321   2232   233567676    345


Q ss_pred             CCChhhhhHHHHHHHhhcCC----HHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhh
Q 012448          313 SQDSDECESALEALGQIGSS----IQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNAD  388 (463)
Q Consensus       313 ~~d~~~~~~A~dtlG~Igss----~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~  388 (463)
                      +-|--++--|-|++.+.-+.    ++--+.|..+  ... +-+-.+.+-.-+-.---+|+|+.+||..+...  .     
T Consensus       380 ~ae~k~kKEACWAisNatsgg~~~PD~iryLv~q--G~I-kpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d--~-----  449 (526)
T COG5064         380 SAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQ--GFI-KPLCDLLDVVDNKIIEVALDAIENILKVGEQD--R-----  449 (526)
T ss_pred             HHHHHHHHHHHHHHHhhhccccCCchHHHHHHHc--cch-hHHHHHHhccCccchhhhHHHHHHHHhhhhHH--H-----
Confidence            66777888899999876542    2222233321  111 22222333333322223499999999976211  0     


Q ss_pred             HHHHHHHH-HHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhh
Q 012448          389 AEESLRHL-IYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELC  445 (463)
Q Consensus       389 ~e~~l~~~-~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~  445 (463)
                      .- ..... +|+.+-+  +..-|+++.++- .---++..-||.++-.-+.-.=++.+|.
T Consensus       450 ~~-~~~nin~ya~~vE--~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~la  505 (526)
T COG5064         450 LR-YGKNINIYAVYVE--KAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELA  505 (526)
T ss_pred             Hh-ccCCccHHHHHHH--hcccHHHHHHhhhccccHHHHHHHHHHHHHcccchhhhhcC
Confidence            00 01111 3333322  123377777776 5578899999999888776666666653

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=2.3e-06  Score=86.72  Aligned_cols=286  Identities=17%  Similarity=0.162  Sum_probs=200.9

Q ss_pred             HHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhh-----chHHHHHHhhcCCCHHHHHHHHHHHH
Q 012448           31 AAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIP-----HYMPFVQVGLTADSHSVKRLACKTVT  105 (463)
Q Consensus        31 ~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~-----~~~~~l~~gL~h~~~~Vr~Lal~~l~  105 (463)
                      .=..+...--|.++.. |+..-|.+-++...- +|-.+   .|.-+--+     .-.++|+..|+..++.||.-|+.+++
T Consensus       159 nk~kiA~sGaL~pltr-Lakskdirvqrnatg-aLlnm---Ths~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttais  233 (550)
T KOG4224|consen  159 NKVKIARSGALEPLTR-LAKSKDIRVQRNATG-ALLNM---THSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAIS  233 (550)
T ss_pred             chhhhhhccchhhhHh-hcccchhhHHHHHHH-HHHHh---hhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhh
Confidence            3345666677777777 443333444443333 33232   23332222     23899999999999999999999999


Q ss_pred             HHHhCCchhHHHHHHHhhccC--cHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCc
Q 012448          106 CLLEDSDLEASCALQLLIDYE--IYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSS  183 (463)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~--l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~  183 (463)
                      .|.-..    . .-+.+++.+  ++|.+++...+++..|+-.|..+|..++.......-|+.++.++  .+.+++  +++
T Consensus       234 nIaVd~----~-~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP--~lv~Ll--qs~  304 (550)
T KOG4224|consen  234 NIAVDR----R-ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLP--LLVELL--QSP  304 (550)
T ss_pred             hhhhhH----H-HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCch--HHHHHH--hCc
Confidence            986432    2 445777777  99999999999999999999999999999988776788999999  888676  666


Q ss_pred             hhHHHHHHH--HHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHH
Q 012448          184 LGRVRVLSL--IVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCS  260 (463)
Q Consensus       184 ~vR~Rv~el--~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~  260 (463)
                      +.+.=.-++  +-+|+-| |-..-.+++.|++..++.-|+-++..-.|..|...|+.||. +.|..+-+...|-+.++.+
T Consensus       305 ~~plilasVaCIrnisih-plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~e  383 (550)
T KOG4224|consen  305 MGPLILASVACIRNISIH-PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIE  383 (550)
T ss_pred             chhHHHHHHHHHhhcccc-cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHH
Confidence            666544443  3335543 55556788999999999999886666699999999999999 9999999999999999999


Q ss_pred             HhcccccchhhhhhhhhHhhhhcccccc-chhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHH
Q 012448          261 LIGNSATETILRSRAIMISGRLLSKDDS-HMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLL  339 (463)
Q Consensus       261 ~i~~~~~dpl~r~~aili~g~i~~f~~~-~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L  339 (463)
                      .+.+....-  +++..-+...+....+. ..|.|   ..-.|.++.    +..+.....++-|..+|+++++.+++..-+
T Consensus       384 L~lD~pvsv--qseisac~a~Lal~d~~k~~lld---~gi~~iLIp----~t~s~s~Ev~gNaAaAL~Nlss~v~~Yarv  454 (550)
T KOG4224|consen  384 LLLDGPVSV--QSEISACIAQLALNDNDKEALLD---SGIIPILIP----WTGSESEEVRGNAAAALINLSSDVEHYARV  454 (550)
T ss_pred             HHhcCChhH--HHHHHHHHHHHHhccccHHHHhh---cCCcceeec----ccCccchhhcccHHHHHHhhhhhhHHHHHH
Confidence            998754322  22211111112211111 11111   111333333    456677889999999999999999986544


Q ss_pred             h
Q 012448          340 L  340 (463)
Q Consensus       340 ~  340 (463)
                      .
T Consensus       455 i  455 (550)
T KOG4224|consen  455 I  455 (550)
T ss_pred             H
Confidence            4

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.64  E-value=3.2e-06  Score=97.38  Aligned_cols=184  Identities=18%  Similarity=0.220  Sum_probs=111.9

Q ss_pred             hcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHH
Q 012448           37 DRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS  116 (463)
Q Consensus        37 ~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~  116 (463)
                      ..-.++.|...|++.+  +..+..++..|.++-        .+...+.|+..|.++++.||..++.+++++.+...   .
T Consensus       619 ~~~~~~~L~~~L~D~d--~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---~  685 (897)
T PRK13800        619 DAPSVAELAPYLADPD--PGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---P  685 (897)
T ss_pred             cchhHHHHHHHhcCCC--HHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---c
Confidence            5556789999998766  889999999998872        24467889999999999999999999998865331   1


Q ss_pred             HHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448          117 CALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL  196 (463)
Q Consensus       117 ~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i  196 (463)
                                 .+.++..|.++|..|...|+.+|..+....          . .  .|...+...|..||..+...+.++
T Consensus       686 -----------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~----------~-~--~l~~~L~D~d~~VR~~Av~aL~~~  741 (897)
T PRK13800        686 -----------APALRDHLGSPDPVVRAAALDVLRALRAGD----------A-A--LFAAALGDPDHRVRIEAVRALVSV  741 (897)
T ss_pred             -----------hHHHHHHhcCCCHHHHHHHHHHHHhhccCC----------H-H--HHHHHhcCCCHHHHHHHHHHHhcc
Confidence                       123445556666667776766666553211          0 1  122245566666666665555544


Q ss_pred             HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhh
Q 012448          197 FSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAI  276 (463)
Q Consensus       197 a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ai  276 (463)
                      ...              +.++.-+.| +|..||..+++-|..+.....        ..++.|..++.+  .||.+|.-++
T Consensus       742 ~~~--------------~~l~~~l~D-~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D--~d~~VR~aA~  796 (897)
T PRK13800        742 DDV--------------ESVAGAATD-ENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGD--PDPLVRAAAL  796 (897)
T ss_pred             cCc--------------HHHHHHhcC-CCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcC--CCHHHHHHHH
Confidence            211              123344666 666666666666666544211        124445554443  3466664444


Q ss_pred             hHhhhh
Q 012448          277 MISGRL  282 (463)
Q Consensus       277 li~g~i  282 (463)
                      ...|.+
T Consensus       797 ~aLg~~  802 (897)
T PRK13800        797 AALAEL  802 (897)
T ss_pred             HHHHhc
Confidence            444433

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.62  E-value=2.3e-05  Score=87.25  Aligned_cols=336  Identities=17%  Similarity=0.130  Sum_probs=224.3

Q ss_pred             hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC
Q 012448           78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP  157 (463)
Q Consensus        78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~  157 (463)
                      -.++...|+.+|++.+..+..+++.-+.++.-..+     -...+...|+++-|+..+..++..+-..|+.+|-+++-.+
T Consensus       288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E-----NK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~  362 (708)
T PF05804_consen  288 NKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE-----NKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP  362 (708)
T ss_pred             hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----HHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH
Confidence            34568999999999999999999999999876552     2334557799999999999999999999999999999888


Q ss_pred             CCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHH
Q 012448          158 NGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLY  237 (463)
Q Consensus       158 ~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~  237 (463)
                      ..-+.++..++++  .|..++.  ++..|.-+..++-+++. .++.-.....++.++.++..+...++.=+++.++-++.
T Consensus       363 ~~R~~mV~~GlIP--kLv~LL~--d~~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~i  437 (708)
T PF05804_consen  363 ELRSQMVSLGLIP--KLVELLK--DPNFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLI  437 (708)
T ss_pred             HHHHHHHHCCCcH--HHHHHhC--CCchHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHH
Confidence            7668899999999  9996664  45566667777777774 67778888889999999998666578878999999999


Q ss_pred             HHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhh-hccccccchhcchhhhhhhHHHHHHHhccccCCCh
Q 012448          238 ELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGR-LLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDS  316 (463)
Q Consensus       238 eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~-i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~  316 (463)
                      .++..+..++.+.+.|+++.|++.... ..||+     +|-.=+ +.-.       +.+....+..++..+.+.+...|.
T Consensus       438 NLa~~~rnaqlm~~g~gL~~L~~ra~~-~~D~l-----LlKlIRNiS~h-------~~~~k~~f~~~i~~L~~~v~~~~~  504 (708)
T PF05804_consen  438 NLALNKRNAQLMCEGNGLQSLMKRALK-TRDPL-----LLKLIRNISQH-------DGPLKELFVDFIGDLAKIVSSGDS  504 (708)
T ss_pred             HHhcCHHHHHHHHhcCcHHHHHHHHHh-cccHH-----HHHHHHHHHhc-------CchHHHHHHHHHHHHHHHhhcCCc
Confidence            999999999999999999999988765 45786     221111 1111       111222233444444444444432


Q ss_pred             hhhhHHHHHHHhhcC---CHHH-HHHHhhcCchhHHHHHHHHHhhccch--hhHhHHhhhHHHhcCCCchhhhhhhhhHH
Q 012448          317 DECESALEALGQIGS---SIQG-ATLLLLCLPPAARHVIDAAFDRQGHG--KQLAALHGLANIAGKTRSEDKIILNADAE  390 (463)
Q Consensus       317 ~~~~~A~dtlG~Igs---s~eG-k~~L~~~~~~~~~~~l~~~~~~~~~~--~k~r~L~al~~Il~~~r~~~~~il~~~~e  390 (463)
                      .  +..++++|.++-   .... ++++.+.   .+-..++.........  ..+-+.-.++.+..-   +          
T Consensus       505 e--e~~vE~LGiLaNL~~~~ld~~~ll~~~---~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d---~----------  566 (708)
T PF05804_consen  505 E--EFVVECLGILANLTIPDLDWAQLLQEY---NLLPWLKDLLKPGASEDDLLLEVVILLGTLASD---P----------  566 (708)
T ss_pred             H--HHHHHHHHHHHhcccCCcCHHHHHHhC---CHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC---H----------
Confidence            2  345555555553   2222 3444331   1222222222211111  122222222222210   0          


Q ss_pred             HHHHHHHHHHHhhCCCCChhHHHHHHh---cCCHHHHHHHHHHHHHhhcCchhHHHhhhccchhHhhcCCCccCC
Q 012448          391 ESLRHLIYEVASRSSKLTPSGLFLSVL---QQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQ  462 (463)
Q Consensus       391 ~~l~~~~ye~~~~~~~~~p~~~~~~~~---qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~  462 (463)
                      + -..+.    .   +..-...+.++.   |-..|+=+-.+.++..+..|+=.-+.|....+.+.|++|--.+.+
T Consensus       567 ~-~A~lL----~---~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N  633 (708)
T PF05804_consen  567 E-CAPLL----A---KSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKN  633 (708)
T ss_pred             H-HHHHH----H---hCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCC
Confidence            0 00011    0   012233344444   558999999999999999999998899998999999988655543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.58  E-value=1e-05  Score=93.18  Aligned_cols=267  Identities=15%  Similarity=0.129  Sum_probs=166.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448           82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID  161 (463)
Q Consensus        82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~  161 (463)
                      .+.|...|+++++.||+.|+..|+++.      .         ++.++.|+..|.|++..|...|+.+|.++....+   
T Consensus       623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~------~---------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        623 VAELAPYLADPDPGVRRTAVAVLTETT------P---------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhhhc------c---------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence            578889999999999999999999852      1         2467788889999999999999999999864322   


Q ss_pred             ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448          162 IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE  241 (463)
Q Consensus       162 ~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~  241 (463)
                            ..+  .|.+.+.+.|..||..+.+.+..+...+            ...++..|.+ +|..||..++.-|..+..
T Consensus       685 ------~~~--~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D-~d~~VR~~Av~aL~~~~~  743 (897)
T PRK13800        685 ------PAP--ALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGD-PDHRVRIEAVRALVSVDD  743 (897)
T ss_pred             ------chH--HHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcC-CCHHHHHHHHHHHhcccC
Confidence                  112  3444666789999999998888875332            2245667889 999999999998887632


Q ss_pred             hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhH
Q 012448          242 IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECES  321 (463)
Q Consensus       242 t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~  321 (463)
                      .             ..|...+.  +.||.+|..+....|.+...        .  ....|.+.    .++.++|+.++.+
T Consensus       744 ~-------------~~l~~~l~--D~~~~VR~~aa~aL~~~~~~--------~--~~~~~~L~----~ll~D~d~~VR~a  794 (897)
T PRK13800        744 V-------------ESVAGAAT--DENREVRIAVAKGLATLGAG--------G--APAGDAVR----ALTGDPDPLVRAA  794 (897)
T ss_pred             c-------------HHHHHHhc--CCCHHHHHHHHHHHHHhccc--------c--chhHHHHH----HHhcCCCHHHHHH
Confidence            1             22333333  36788885555555544331        0  11123333    3567889999999


Q ss_pred             HHHHHHhhcCCHHHH----HHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHH
Q 012448          322 ALEALGQIGSSIQGA----TLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLI  397 (463)
Q Consensus       322 A~dtlG~Igss~eGk----~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~  397 (463)
                      |+.+||.+|......    .+|... .+..+...-.+...+.   .-.++..|...+.-           +... +++-.
T Consensus       795 A~~aLg~~g~~~~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~---~~~a~~~L~~~L~D-----------~~~~-VR~~A  858 (897)
T PRK13800        795 ALAALAELGCPPDDVAAATAALRAS-AWQVRQGAARALAGAA---ADVAVPALVEALTD-----------PHLD-VRKAA  858 (897)
T ss_pred             HHHHHHhcCCcchhHHHHHHHhcCC-ChHHHHHHHHHHHhcc---ccchHHHHHHHhcC-----------CCHH-HHHHH
Confidence            999999999865432    222222 2333332222222111   11233444444431           1122 33222


Q ss_pred             HHHHhhCCCCCh--hHHHHHHh-cCCHHHHHHHHHHHHH
Q 012448          398 YEVASRSSKLTP--SGLFLSVL-QQAAEIRLAGYRMITG  433 (463)
Q Consensus       398 ye~~~~~~~~~p--~~~~~~~~-qpF~elr~A~~~~l~~  433 (463)
                      -.+..+. .++|  ...+.... -+.+++|.+|-+-|..
T Consensus       859 ~~aL~~~-~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        859 VLALTRW-PGDPAARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHHhcc-CCCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            1333332 2233  34555666 8899999988877653

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=98.58  E-value=9.4e-07  Score=88.76  Aligned_cols=242  Identities=14%  Similarity=0.153  Sum_probs=199.0

Q ss_pred             HHhhhhccCCCCCChHHHHH-HHhcCChHHHHHccccCCCCc--chHHHHHHHHHHHhcccccc---chhhchHHHHHHh
Q 012448           15 DSASDFAYHPGVQNDAAAKK-FLDRFPLSVILNTLQTKPDVP--GLEDTLVVCLERIFKTKYGA---SLIPHYMPFVQVG   88 (463)
Q Consensus        15 ~~~~~~a~~p~~~s~~~~~~-~~~~~~l~~L~~~L~~~~~~~--~~~~~~~~vL~~il~~~~~~---~l~~~~~~~l~~g   88 (463)
                      |+---+.|-.|.-+  .-|+ ++..--|.++++.|.++.  +  .....++-.|..+---+.|+   ....+..+-|..-
T Consensus       176 QavWALGNiAGDS~--~~RD~vL~~galeplL~ll~ss~--~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KL  251 (526)
T COG5064         176 QAVWALGNIAGDSE--GCRDYVLQCGALEPLLGLLLSSA--IHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKL  251 (526)
T ss_pred             HHHHHhccccCCch--hHHHHHHhcCchHHHHHHHHhcc--chHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHH
Confidence            44445667766533  3344 458899999999999765  3  23445555666665444443   3566778999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCC
Q 012448           89 LTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPAD  167 (463)
Q Consensus        89 L~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~  167 (463)
                      +..-|+.|-.=|||++.++.+..   .+ ..+.+.|.|+.+-++..|..++..+-..|+.++..|-.-.+.. +++.+.+
T Consensus       252 iys~D~evlvDA~WAiSYlsDg~---~E-~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G  327 (526)
T COG5064         252 IYSRDPEVLVDACWAISYLSDGP---NE-KIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCG  327 (526)
T ss_pred             HhhcCHHHHHHHHHHHHHhccCc---HH-HHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecc
Confidence            99999999999999999998766   56 8899999999999999999999999999999999986666644 7899999


Q ss_pred             CcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh----hH
Q 012448          168 NKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE----IQ  243 (463)
Q Consensus       168 ~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~----t~  243 (463)
                      ++.  .+..++.++.+-+|--+|=.+.+|-.-..+..+++++++++|.++..|.. -|--.|+-|.=-+.....    -|
T Consensus       328 ~L~--a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~-ae~k~kKEACWAisNatsgg~~~P  404 (526)
T COG5064         328 ALK--AFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSS-AEYKIKKEACWAISNATSGGLNRP  404 (526)
T ss_pred             cHH--HHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHH-HHHHHHHHHHHHHHhhhccccCCc
Confidence            998  88888999999999999999999999999999999999999999999988 898888887766665544    57


Q ss_pred             HHHHHHHhcchHHHHHHHhccccc
Q 012448          244 HSAEFLSRTTLLQLLCSLIGNSAT  267 (463)
Q Consensus       244 ~g~~~L~~~gi~~~L~~~i~~~~~  267 (463)
                      +-.+||+.+|.++-|++++....+
T Consensus       405 D~iryLv~qG~IkpLc~~L~~~dN  428 (526)
T COG5064         405 DIIRYLVSQGFIKPLCDLLDVVDN  428 (526)
T ss_pred             hHHHHHHHccchhHHHHHHhccCc
Confidence            778999999999999999876544

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=1.6e-05  Score=90.20  Aligned_cols=358  Identities=15%  Similarity=0.159  Sum_probs=203.7

Q ss_pred             hHHHHHccccCCCCcchHHHHHHHHHHHhcccccc--chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448           41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA--SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA  118 (463)
Q Consensus        41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~--~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~  118 (463)
                      |+-||.|.++.+  +..++.+-.+|..+-......  .....+...+..|+..|+..||..++++++..+.-.+++.. .
T Consensus       120 l~~L~q~~~S~~--~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~-~  196 (1075)
T KOG2171|consen  120 LQFLFQSTKSPN--PSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKS-E  196 (1075)
T ss_pred             HHHHHHHhcCCC--cchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchH-H
Confidence            556789999887  788998888998885544332  12335789999999999999999999999998864432233 3


Q ss_pred             HHHhhc--cCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHh--hcCCchhHHHHHHHH
Q 012448          119 LQLLID--YEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLV--AQCSSLGRVRVLSLI  193 (463)
Q Consensus       119 ~~~~~~--~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~--~~~~~~vR~Rv~el~  193 (463)
                      ++.+.+  +.++..+-.+++++|.-.|+.+.++|-+++...|-+ ...+.. ++. -.|+ +.  ..-++.+|.++++++
T Consensus       197 ~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~-~~l~-Ia~n~~l~~~~R~~ALe~i  273 (1075)
T KOG2171|consen  197 VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQ-FSLE-IAKNKELENSIRHLALEFL  273 (1075)
T ss_pred             HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHH-HHHH-HhhcccccHHHHHHHHHHH
Confidence            443332  234444446889999999999999999998776522 111110 111 0111 22  245899999999999


Q ss_pred             HHHHhcCHHHHHHH--HhhccHHHHHhhcCCCCcH--H-------------HHHhHHHHHHHHHhhHHHHHHHHhcchHH
Q 012448          194 VKLFSVSRSVASVI--FKANLLTLLEEGVSKKNDT--L-------------ETLSILELLYELAEIQHSAEFLSRTTLLQ  256 (463)
Q Consensus       194 v~ia~~S~~~~~~v--~~sgl~~~ll~eL~~~~Dv--L-------------v~lnalell~eLa~t~~g~~~L~~~gi~~  256 (463)
                      +..++.-+.....-  .-..+++.++..+.+-+|.  .             -..-|.+.+--+|-.=.|-+.+.  =++.
T Consensus       274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p--~~~~  351 (1075)
T KOG2171|consen  274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP--PLFE  351 (1075)
T ss_pred             HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH--HHHH
Confidence            99987622211111  1124677777776552221  0             01112222222222111110000  0222


Q ss_pred             HHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHH
Q 012448          257 LLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGA  336 (463)
Q Consensus       257 ~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk  336 (463)
                      .+..++.  ..|+.-|.-++|..|-+.-  |-.+.    ..+..|..++.+...+.++++..+-+|..++||+.+.-  .
T Consensus       352 ~l~~~l~--S~~w~~R~AaL~Als~i~E--Gc~~~----m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl--~  421 (1075)
T KOG2171|consen  352 ALEAMLQ--STEWKERHAALLALSVIAE--GCSDV----MIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL--Q  421 (1075)
T ss_pred             HHHHHhc--CCCHHHHHHHHHHHHHHHc--ccHHH----HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh--c
Confidence            3333333  2555555555565555543  33332    23457888888888899999999999999999998732  1


Q ss_pred             HHHhhcCchhHHHHHHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhH-HHH
Q 012448          337 TLLLLCLPPAARHVIDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSG-LFL  414 (463)
Q Consensus       337 ~~L~~~~~~~~~~~l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~-~~~  414 (463)
                      ..++++.+..+-..+-...+...+.+ +..|-.|+-+.+..               +....+ +-...    .-++ ++.
T Consensus       422 p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~---------------~~~~~l-~pYLd----~lm~~~l~  481 (1075)
T KOG2171|consen  422 PEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE---------------CDKSIL-EPYLD----GLMEKKLL  481 (1075)
T ss_pred             HHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh---------------CcHHHH-HHHHH----HHHHHHHH
Confidence            22333223333333333333333333 33444444444431               111111 22211    2233 455


Q ss_pred             HHh-cCCHHHHHHHHHHHHHhhc
Q 012448          415 SVL-QQAAEIRLAGYRMITGLVA  436 (463)
Q Consensus       415 ~~~-qpF~elr~A~~~~l~~l~~  436 (463)
                      -+. ..-|.+|..+..-+..+|.
T Consensus       482 ~L~~~~~~~v~e~vvtaIasvA~  504 (1075)
T KOG2171|consen  482 LLLQSSKPYVQEQAVTAIASVAD  504 (1075)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHH
Confidence            555 5688899888877777664

>PTZ00429 beta-adaptin; Provisional

Probab=98.47  E-value=0.00013  Score=81.99  Aligned_cols=291  Identities=15%  Similarity=0.153  Sum_probs=181.7

Q ss_pred             HHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 012448           42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQL  121 (463)
Q Consensus        42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~  121 (463)
                      +.++.+.++++  -..|+.+-..|..+  +...++++--....+++-++|+||.||.+|++.++++-.     .. ..+.
T Consensus        71 ~dVvk~~~S~d--~elKKLvYLYL~~y--a~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~-----~~-i~e~  140 (746)
T PTZ00429         71 VDVVKLAPSTD--LELKKLVYLYVLST--ARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV-----SS-VLEY  140 (746)
T ss_pred             HHHHHHhCCCC--HHHHHHHHHHHHHH--cccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-----HH-HHHH
Confidence            44446666655  55666666677776  333334443468889999999999999999999999632     22 4432


Q ss_pred             hhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCH
Q 012448          122 LIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSR  201 (463)
Q Consensus       122 ~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~  201 (463)
                           +++.|..|+.|++.-|.+.|+-++.++-+..|.  .+.+.+..+  .|.+++...|..|...+..++.+|...++
T Consensus       141 -----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe--lv~~~~~~~--~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~  211 (746)
T PTZ00429        141 -----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ--LFYQQDFKK--DLVELLNDNNPVVASNAAAIVCEVNDYGS  211 (746)
T ss_pred             -----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc--cccccchHH--HHHHHhcCCCccHHHHHHHHHHHHHHhCc
Confidence                 456677899999999999999999999887663  334556666  88888899999999999999999998888


Q ss_pred             HHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhh
Q 012448          202 SVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGR  281 (463)
Q Consensus       202 ~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~  281 (463)
                      +.++...  +.+..+++.|.+ -|.-.|...+++|....  |..-+  ....++..+...++.  .+|-+-.-++-+.-.
T Consensus       212 ~~l~l~~--~~~~~Ll~~L~e-~~EW~Qi~IL~lL~~y~--P~~~~--e~~~il~~l~~~Lq~--~N~AVVl~Aik~il~  282 (746)
T PTZ00429        212 EKIESSN--EWVNRLVYHLPE-CNEWGQLYILELLAAQR--PSDKE--SAETLLTRVLPRMSH--QNPAVVMGAIKVVAN  282 (746)
T ss_pred             hhhHHHH--HHHHHHHHHhhc-CChHHHHHHHHHHHhcC--CCCcH--HHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH
Confidence            7776654  788999999988 88999999999995532  11111  012445555555444  334321011100001


Q ss_pred             hccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccch
Q 012448          282 LLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHG  361 (463)
Q Consensus       282 i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~  361 (463)
                      +.+..+ -..+.+.+.+--++.+     .+.+.++.++=+++..+-.|....          +..+..-++.++-.....
T Consensus       283 l~~~~~-~~~~~~~~~rl~~pLv-----~L~ss~~eiqyvaLr~I~~i~~~~----------P~lf~~~~~~Ff~~~~Dp  346 (746)
T PTZ00429        283 LASRCS-QELIERCTVRVNTALL-----TLSRRDAETQYIVCKNIHALLVIF----------PNLLRTNLDSFYVRYSDP  346 (746)
T ss_pred             hcCcCC-HHHHHHHHHHHHHHHH-----HhhCCCccHHHHHHHHHHHHHHHC----------HHHHHHHHHhhhcccCCc
Confidence            111000 0001010111001112     235677888888888875554411          233333344444444433


Q ss_pred             h--hHhHHhhhHHHhcC
Q 012448          362 K--QLAALHGLANIAGK  376 (463)
Q Consensus       362 ~--k~r~L~al~~Il~~  376 (463)
                      .  |.+.|+-+..+...
T Consensus       347 ~yIK~~KLeIL~~Lane  363 (746)
T PTZ00429        347 PFVKLEKLRLLLKLVTP  363 (746)
T ss_pred             HHHHHHHHHHHHHHcCc
Confidence            3  77777777777653

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=7.8e-05  Score=84.78  Aligned_cols=359  Identities=18%  Similarity=0.165  Sum_probs=218.7

Q ss_pred             hHHHHHHHhcC-----ChHHHHHccccCCCCcchHHHHHHHHHHHhccccc---cchhhchHHHHHHhh-cCCCHHHHHH
Q 012448           29 DAAAKKFLDRF-----PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG---ASLIPHYMPFVQVGL-TADSHSVKRL   99 (463)
Q Consensus        29 ~~~~~~~~~~~-----~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~---~~l~~~~~~~l~~gL-~h~~~~Vr~L   99 (463)
                      ...|++.+++.     -++.|...+++.. ++..+..++-.+||++....+   .+.-++++..|..+. +++.+.||.-
T Consensus        21 r~~Ae~~l~~~~~~~~~l~~L~~i~~~~~-~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k   99 (1075)
T KOG2171|consen   21 RRQAEEALETLAKTEPLLPALAHILATSA-DPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHK   99 (1075)
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            44555555422     5778888888765 366666666677888765433   345556666655555 5669999999


Q ss_pred             HHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhH--
Q 012448          100 ACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNL--  177 (463)
Q Consensus       100 al~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~--  177 (463)
                      .+..+..++++...+        .=+++++.+++|..+++.+.-..|.-+|+.+...-.+-.    .+.+.  .+.++  
T Consensus       100 ~~dviAeia~~~l~e--------~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~----~~~~~--~l~~lf~  165 (1075)
T KOG2171|consen  100 LADVIAEIARNDLPE--------KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL----QPHLD--DLLRLFS  165 (1075)
T ss_pred             HHHHHHHHHHhcccc--------chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc----chhHH--HHHHHHH
Confidence            999999999877221        235899999999999999999999999998865543211    11122  23323  


Q ss_pred             --hhcCCchhHHHHHHHHHHHHhcC---HHHHHHHHhhccHHHHHhh----cCCCCcHHHHHhHHHHHHHHHh--hHHHH
Q 012448          178 --VAQCSSLGRVRVLSLIVKLFSVS---RSVASVIFKANLLTLLEEG----VSKKNDTLETLSILELLYELAE--IQHSA  246 (463)
Q Consensus       178 --~~~~~~~vR~Rv~el~v~ia~~S---~~~~~~v~~sgl~~~ll~e----L~~~~DvLv~lnalell~eLa~--t~~g~  246 (463)
                        +...++.||.-..-.+...+...   .+......  .++|.+++-    +++ +|.=.-..+++.|.|+++  .+-..
T Consensus       166 q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~-~d~~~a~~~l~~l~El~e~~pk~l~  242 (1075)
T KOG2171|consen  166 QTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQD-GDDDAAKSALEALIELLESEPKLLR  242 (1075)
T ss_pred             HhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhc-cchHHHHHHHHHHHHHHhhchHHHH
Confidence              33445556655555555555544   33333332  466666554    444 677667889999999999  33344


Q ss_pred             HHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccc----cchhcchh-hhhhhHHHHHHHhcc-----------
Q 012448          247 EFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDD----SHMFIDES-SAKTVISAIDGRLGF-----------  310 (463)
Q Consensus       247 ~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~----~~~~~~~~-~~k~~p~~l~~~f~~-----------  310 (463)
                      .+++  .+++....+..+.+-|+-+|..|+   -+|.++.+    ..+.- ++ ..+-+|..+...-+.           
T Consensus       243 ~~l~--~ii~~~l~Ia~n~~l~~~~R~~AL---e~ivs~~e~Ap~~~k~~-~~~~~~lv~~~l~~mte~~~D~ew~~~d~  316 (1075)
T KOG2171|consen  243 PHLS--QIIQFSLEIAKNKELENSIRHLAL---EFLVSLSEYAPAMCKKL-ALLGHTLVPVLLAMMTEEEDDDEWSNEDD  316 (1075)
T ss_pred             HHHH--HHHHHHHHHhhcccccHHHHHHHH---HHHHHHHHhhHHHhhhc-hhhhccHHHHHHHhcCCcccchhhccccc
Confidence            5554  356666677777776666785554   33333211    11110 11 111122222211111           


Q ss_pred             ccCCC-hhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhH
Q 012448          311 LQSQD-SDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADA  389 (463)
Q Consensus       311 ~~~~d-~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~  389 (463)
                      +++.| .+..-.|..++-.++..--||+++-    +.+.+ +..+.....=..|.++|-|++.|-+--  .         
T Consensus       317 ~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p----~~~~~-l~~~l~S~~w~~R~AaL~Als~i~EGc--~---------  380 (1075)
T KOG2171|consen  317 LDEDDEETPYRAAEQALDRLALHLGGKQVLP----PLFEA-LEAMLQSTEWKERHAALLALSVIAEGC--S---------  380 (1075)
T ss_pred             cccccccCcHHHHHHHHHHHHhcCChhhehH----HHHHH-HHHHhcCCCHHHHHHHHHHHHHHHccc--H---------
Confidence            11111 2345677777877888888888874    23333 333332222122899999999988632  1         


Q ss_pred             HHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcC
Q 012448          390 EESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVAR  437 (463)
Q Consensus       390 e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~  437 (463)
                       +.+....         .+-+.++++.. -|.|.+|.||+..+-++++.
T Consensus       381 -~~m~~~l---------~~Il~~Vl~~l~DphprVr~AA~naigQ~std  419 (1075)
T KOG2171|consen  381 -DVMIGNL---------PKILPIVLNGLNDPHPRVRYAALNAIGQMSTD  419 (1075)
T ss_pred             -HHHHHHH---------HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhh
Confidence             1233333         34577888888 99999999999999998875

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.42  E-value=1.5e-06  Score=73.68  Aligned_cols=117  Identities=17%  Similarity=0.108  Sum_probs=106.3

Q ss_pred             hhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcC
Q 012448          122 LIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVS  200 (463)
Q Consensus       122 ~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S  200 (463)
                      +++.|+++.++..+.+++..+...|+.+|..+++..+ ..+.+++.++++  .|.+.+...|..+|..++.++.+++...
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~--~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLP--ALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChH--HHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            4567899999999999999999999999999999955 446777888988  8888888899999999999999999999


Q ss_pred             HHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448          201 RSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE  241 (463)
Q Consensus       201 ~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~  241 (463)
                      +...+.+.+.|+++.++..+.+ +|.-++..++.+|..|++
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDS-SNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999 899999999999998864

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PTZ00429 beta-adaptin; Provisional

Probab=98.31  E-value=0.00056  Score=77.04  Aligned_cols=254  Identities=11%  Similarity=0.052  Sum_probs=166.0

Q ss_pred             cCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHH
Q 012448           38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASC  117 (463)
Q Consensus        38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~  117 (463)
                      +-...+|-..|++.+ ....++.+.-++..+    ..+.-...+...++.++.+++..+|+++.-.+.+.++..   .. 
T Consensus        31 kge~~ELr~~L~s~~-~~~kk~alKkvIa~m----t~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~---pe-  101 (746)
T PTZ00429         31 RGEGAELQNDLNGTD-SYRKKAAVKRIIANM----TMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ---PE-  101 (746)
T ss_pred             cchHHHHHHHHHCCC-HHHHHHHHHHHHHHH----HCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC---hH-
Confidence            345677778887765 122233333344444    222222335666777999999999999999998887644   33 


Q ss_pred             HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448          118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF  197 (463)
Q Consensus       118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia  197 (463)
                      ++-+++     ..+..-+.|++.-+..-|+.+|..|--.  .   +++ .+..  .+++.+.+.++.||.-+.-++.++.
T Consensus       102 lalLaI-----Ntl~KDl~d~Np~IRaLALRtLs~Ir~~--~---i~e-~l~~--~lkk~L~D~~pYVRKtAalai~Kly  168 (746)
T PTZ00429        102 KALLAV-----NTFLQDTTNSSPVVRALAVRTMMCIRVS--S---VLE-YTLE--PLRRAVADPDPYVRKTAAMGLGKLF  168 (746)
T ss_pred             HHHHHH-----HHHHHHcCCCCHHHHHHHHHHHHcCCcH--H---HHH-HHHH--HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            333333     3455678899999999999999876421  1   111 1222  5677888999999999999999999


Q ss_pred             hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhh
Q 012448          198 SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAI  276 (463)
Q Consensus       198 ~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ai  276 (463)
                      ..+++.   +.+.|+++.+...|.| .|..|..||+-+|.++.+ .+..  +-...+.+.+|++.+.+  .++......+
T Consensus       169 ~~~pel---v~~~~~~~~L~~LL~D-~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e--~~EW~Qi~IL  240 (746)
T PTZ00429        169 HDDMQL---FYQQDFKKDLVELLND-NNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPE--CNEWGQLYIL  240 (746)
T ss_pred             hhCccc---ccccchHHHHHHHhcC-CCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhc--CChHHHHHHH
Confidence            999964   5567899999998999 999999999999999988 3433  44456778888888865  3566442222


Q ss_pred             hHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448          277 MISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS  331 (463)
Q Consensus       277 li~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs  331 (463)
                      =+...+.|..       .   ...-.+++.+...+++.++...-.|+-++=.+..
T Consensus       241 ~lL~~y~P~~-------~---~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~  285 (746)
T PTZ00429        241 ELLAAQRPSD-------K---ESAETLLTRVLPRMSHQNPAVVMGAIKVVANLAS  285 (746)
T ss_pred             HHHHhcCCCC-------c---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            2222222210       0   1112344444455666666666666666655554

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.30  E-value=5.6e-06  Score=70.10  Aligned_cols=112  Identities=21%  Similarity=0.233  Sum_probs=98.0

Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC
Q 012448           80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG  159 (463)
Q Consensus        80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~  159 (463)
                      ...+.+...|.++++.+|+.+++.++.+..+.   +. ..+.+.+.++++.++.++.+++..+...|+.+|..|+...+.
T Consensus         7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---~~-~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~   82 (120)
T cd00020           7 GGLPALVSLLSSSDENVQREAAWALSNLSAGN---ND-NIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED   82 (120)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC---HH-HHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence            46788889999999999999999999999886   55 667778889999999999999999999999999999998864


Q ss_pred             c-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448          160 I-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF  197 (463)
Q Consensus       160 l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia  197 (463)
                      . +.+.+.+.++  .|.+.+...+..+|..++.++.+++
T Consensus        83 ~~~~~~~~g~l~--~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          83 NKLIVLEAGGVP--KLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHCCChH--HHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            3 5667788888  8887888888899999999888876

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=0.0032  Score=69.35  Aligned_cols=331  Identities=15%  Similarity=0.167  Sum_probs=195.9

Q ss_pred             ccchhhchHHHHHHhhcCCCHH-HHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhc--CCchHHHHHHHHHH
Q 012448           74 GASLIPHYMPFVQVGLTADSHS-VKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLI--NGNEEVATASMDAI  150 (463)
Q Consensus        74 ~~~l~~~~~~~l~~gL~h~~~~-Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~--d~d~~va~~A~~~L  150 (463)
                      |...-|.+...++.-...+.+. ||+.+|.++|+|-++.   +.+..+.-. +.++..|+....  ++...|.-+|.++|
T Consensus       123 P~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i---~pevl~~~s-N~iLtaIv~gmrk~e~s~~vRLaa~~aL  198 (859)
T KOG1241|consen  123 PQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI---DPEVLEQQS-NDILTAIVQGMRKEETSAAVRLAALNAL  198 (859)
T ss_pred             chhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC---CHHHHHHHH-hHHHHHHHhhccccCCchhHHHHHHHHH
Confidence            3344455566666666666665 9999999999998887   331222222 357888887554  55667888899998


Q ss_pred             HHHhCCCC-----Ccc-ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCC
Q 012448          151 KKLAGFPN-----GID-IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKN  224 (463)
Q Consensus       151 ~~lak~~~-----~l~-~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~  224 (463)
                      -+-..+..     +.+ .++..-+.+      .-..++..+|.-++.|+++|.+.--+..+...+..+|..-+.-+++ +
T Consensus       199 ~nsLef~~~nF~~E~ern~iMqvvcE------atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks-~  271 (859)
T KOG1241|consen  199 YNSLEFTKANFNNEMERNYIMQVVCE------ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKS-D  271 (859)
T ss_pred             HHHHHHHHHhhccHhhhceeeeeeee------cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence            76543321     111 112222222      2346788999999999999999999999999999999999999998 9


Q ss_pred             cHHHHHhHHHHHHHHHhh-HH----------------HHHHHHh--cchHHHHHHHhcccccchh--hhhhhh-------
Q 012448          225 DTLETLSILELLYELAEI-QH----------------SAEFLSR--TTLLQLLCSLIGNSATETI--LRSRAI-------  276 (463)
Q Consensus       225 DvLv~lnalell~eLa~t-~~----------------g~~~L~~--~gi~~~L~~~i~~~~~dpl--~r~~ai-------  276 (463)
                      +.=|.+-++|.-..+++- -+                ...|..+  ++++.-|.+.+..-.+|+.  +-+|++       
T Consensus       272 ~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~  351 (859)
T KOG1241|consen  272 NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLM  351 (859)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHH
Confidence            889999999988755551 11                1122222  2777888888876443332  234444       


Q ss_pred             ------------hHhhhhccc---c-------ccchh---cchh---h-hhhhHHHHHHHhccccCCChhhhhHHHHHHH
Q 012448          277 ------------MISGRLLSK---D-------DSHMF---IDES---S-AKTVISAIDGRLGFLQSQDSDECESALEALG  327 (463)
Q Consensus       277 ------------li~g~i~~f---~-------~~~~~---~~~~---~-~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG  327 (463)
                                  ++.+|+.-.   .       .+++|   .+.|   + -+-.+..+..+.++...+.-..+.+|.||||
T Consensus       352 l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlg  431 (859)
T KOG1241|consen  352 LFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLG  431 (859)
T ss_pred             HHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHH
Confidence                        223333310   0       01222   1122   1 1112223333333444566678899999999


Q ss_pred             hhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCC
Q 012448          328 QIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKL  407 (463)
Q Consensus       328 ~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~  407 (463)
                      .|+.+..-+..=    ..-....+.........-||+..-.||+.+.=                  .+-.||+.-.+...
T Consensus       432 rI~d~l~e~~~n----~~~l~~~l~~l~~gL~DePrva~N~CWAf~~L------------------aea~~eA~~s~~qt  489 (859)
T KOG1241|consen  432 RIADFLPEAIIN----QELLQSKLSALLEGLNDEPRVASNVCWAFISL------------------AEAAYEAAVSNGQT  489 (859)
T ss_pred             HHHhhchhhccc----HhhhhHHHHHHHHHhhhCchHHHHHHHHHHHH------------------HHHHHHhccCCCCC
Confidence            999855522111    12233444444555555667777777765432                  22222322222112


Q ss_pred             ChhH--------HHHHHh-c---CCHHHHHHHHHHHHHhhcC
Q 012448          408 TPSG--------LFLSVL-Q---QAAEIRLAGYRMITGLVAR  437 (463)
Q Consensus       408 ~p~~--------~~~~~~-q---pF~elr~A~~~~l~~l~~~  437 (463)
                      .|.+        -++... +   .-..+|+|||.-|-.|..+
T Consensus       490 ~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~  531 (859)
T KOG1241|consen  490 DPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKN  531 (859)
T ss_pred             CccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc
Confidence            2222        233333 4   3467999999999988776

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.0014  Score=66.11  Aligned_cols=289  Identities=15%  Similarity=0.129  Sum_probs=188.8

Q ss_pred             HHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCH----HHHHHHHhhccHHHHHhh
Q 012448          144 TASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSR----SVASVIFKANLLTLLEEG  219 (463)
Q Consensus       144 ~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~----~~~~~v~~sgl~~~ll~e  219 (463)
                      .--.+.|.++.|...|...  -++.-+  .|+..+.+.|+.||.=.|.-+.-|-.-+.    .....+++.|+++.++.+
T Consensus        61 tlcVscLERLfkakegahl--apnlmp--dLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildc  136 (524)
T KOG4413|consen   61 TLCVSCLERLFKAKEGAHL--APNLMP--DLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDC  136 (524)
T ss_pred             hhHHHHHHHHHhhccchhh--chhhhH--HHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHH
Confidence            3356778899887776653  345556  77777889999999999988877776654    234567799999999999


Q ss_pred             cCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcc-ccccchhcchhhhh
Q 012448          220 VSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLS-KDDSHMFIDESSAK  298 (463)
Q Consensus       220 L~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~-f~~~~~~~~~~~~k  298 (463)
                      +-+ .|.-|-..++|-+..++.++.|..-|......+-+-..=.-.+.+.+.|-|.+-..-.+.+ +....+.    |-|
T Consensus       137 Igg-eddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesane----ckk  211 (524)
T KOG4413|consen  137 IGG-EDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANE----CKK  211 (524)
T ss_pred             HcC-CcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhH----hhh
Confidence            999 8888899999999999999999999988887776644322344555555333211111111 1112221    222


Q ss_pred             hhHHHHHHHhccccC-CChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchh--hHhHHhhhHHHhc
Q 012448          299 TVISAIDGRLGFLQS-QDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGK--QLAALHGLANIAG  375 (463)
Q Consensus       299 ~~p~~l~~~f~~~~~-~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~--k~r~L~al~~Il~  375 (463)
                      .  -+++.+..-+.. .|.-.+..+++-.-.+..+.+|++.+.+.   -+-..+-.+.....++|  |.|+|--++.+|+
T Consensus       212 S--GLldlLeaElkGteDtLVianciElvteLaeteHgreflaQe---glIdlicnIIsGadsdPfekfralmgfgkffg  286 (524)
T KOG4413|consen  212 S--GLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQE---GLIDLICNIISGADSDPFEKFRALMGFGKFFG  286 (524)
T ss_pred             h--hHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchh---hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc
Confidence            1  133333333444 67778899999999999999999999863   33333333344444666  9999999999998


Q ss_pred             CCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHhcCCHHHHHHHHHHHHHhhcCchhHHHhhh-ccchhHhh
Q 012448          376 KTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAEIRLAGYRMITGLVARPWCLMELCS-KQEIINTV  454 (463)
Q Consensus       376 ~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~qpF~elr~A~~~~l~~l~~~~Wg~~~i~~-~~gfie~l  454 (463)
                      -+.     |++-..|..-.+++ -.. +       +.|-++--+.||..-+|..-+-.+.+-.-|...+.. .|.-.|.+
T Consensus       287 kea-----imdvseeaiceali-iai-d-------gsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehl  352 (524)
T KOG4413|consen  287 KEA-----IMDVSEEAICEALI-IAI-D-------GSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHL  352 (524)
T ss_pred             chH-----HhhcCHHHHHHHHH-HHH-H-------hhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHH
Confidence            541     22111111111111 110 0       122234477899999999999999999888766664 44477777


Q ss_pred             cCCCcc
Q 012448          455 TDASTE  460 (463)
Q Consensus       455 ldr~~E  460 (463)
                      +-|--+
T Consensus       353 larafd  358 (524)
T KOG4413|consen  353 LARAFD  358 (524)
T ss_pred             HHHHhc
Confidence            655433

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=97.83  E-value=0.00047  Score=68.21  Aligned_cols=194  Identities=16%  Similarity=0.116  Sum_probs=146.3

Q ss_pred             chhhchHHHHHHhhc-CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 012448           76 SLIPHYMPFVQVGLT-ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLA  154 (463)
Q Consensus        76 ~l~~~~~~~l~~gL~-h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~la  154 (463)
                      .+.++-.+.|...|+ ..+|.+++-++.+++..+..+    . -...+.+.|.++.|...+.+|+.++...|..+|..++
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~----~-nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls   82 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP----F-NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLS   82 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh----h-HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcC
Confidence            345556677888888 468999999999999977655    2 3457788899999999999999999999999999998


Q ss_pred             CCCCCccccccCCCcchhhHhhHhh-cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHH
Q 012448          155 GFPNGIDIIFPADNKAATDLGNLVA-QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSIL  233 (463)
Q Consensus       155 k~~~~l~~l~~~~~~~~~~L~~~~~-~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnal  233 (463)
                      -..+....+ . ..+. .-++..+. ..|+.+..-.+-++.+++ +..+.-..+.  +.++.++..|.. .+.-+|..++
T Consensus        83 ~~~en~~~I-k-~~i~-~Vc~~~~s~~lns~~Q~agLrlL~nLt-v~~~~~~~l~--~~i~~ll~LL~~-G~~~~k~~vL  155 (254)
T PF04826_consen   83 VNDENQEQI-K-MYIP-QVCEETVSSPLNSEVQLAGLRLLTNLT-VTNDYHHMLA--NYIPDLLSLLSS-GSEKTKVQVL  155 (254)
T ss_pred             CChhhHHHH-H-HHHH-HHHHHHhcCCCCCHHHHHHHHHHHccC-CCcchhhhHH--hhHHHHHHHHHc-CChHHHHHHH
Confidence            877654322 1 1111 12222222 348889988999999996 4455545554  478888988888 9999999999


Q ss_pred             HHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhh
Q 012448          234 ELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRL  282 (463)
Q Consensus       234 ell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i  282 (463)
                      .+|.-|++.+...+.|.+..++..++...+........ .+++.+..-|
T Consensus       156 k~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l-~~~l~~~~ni  203 (254)
T PF04826_consen  156 KVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENL-LRVLTFFENI  203 (254)
T ss_pred             HHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHH-HHHHHHHHHH
Confidence            99999999999999999999999999988876533321 1344444444

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=97.64  E-value=0.00069  Score=67.03  Aligned_cols=193  Identities=17%  Similarity=0.240  Sum_probs=140.0

Q ss_pred             HHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc--chhh--chHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 012448           34 KFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA--SLIP--HYMPFVQVGLTADSHSVKRLACKTVTCLLE  109 (463)
Q Consensus        34 ~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~--~l~~--~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~  109 (463)
                      .+++...+..|+..|+.+. .|+..+.+...+...  +-++.  .+..  ...+.+..-|..|++.||+-|++++..+..
T Consensus         7 ~~l~~~~l~~Ll~lL~~t~-dp~i~e~al~al~n~--aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~   83 (254)
T PF04826_consen    7 NILEAQELQKLLCLLESTE-DPFIQEKALIALGNS--AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV   83 (254)
T ss_pred             CCcCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhh--ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC
Confidence            4567777889999999754 388888888888886  33332  3333  348999999999999999999999999876


Q ss_pred             CCchhHHHHHHHhhccCcHHHHHHh-hcC-CchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHH
Q 012448          110 DSDLEASCALQLLIDYEIYPLLLDC-LIN-GNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRV  187 (463)
Q Consensus       110 ~~~~~~~~~~~~~~~~~l~~~li~~-l~d-~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~  187 (463)
                      +.++- . ..+.     .++.++.. +.. -|..+-..++++|..++-....-+.+  .+.++  .+-+++...|..+|.
T Consensus        84 ~~en~-~-~Ik~-----~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l--~~~i~--~ll~LL~~G~~~~k~  152 (254)
T PF04826_consen   84 NDENQ-E-QIKM-----YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML--ANYIP--DLLSLLSSGSEKTKV  152 (254)
T ss_pred             ChhhH-H-HHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH--HhhHH--HHHHHHHcCChHHHH
Confidence            65331 2 2222     24444432 222 26677788999999997665443333  23566  666788999999999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448          188 RVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE  241 (463)
Q Consensus       188 Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~  241 (463)
                      +++-++++++ .+++..........++.++.-++...+-=+-++++.++.-+.+
T Consensus       153 ~vLk~L~nLS-~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  153 QVLKVLVNLS-ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE  205 (254)
T ss_pred             HHHHHHHHhc-cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            9999999999 4588888888888999999888774345555677777776655

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.62  E-value=0.00038  Score=66.86  Aligned_cols=153  Identities=17%  Similarity=0.108  Sum_probs=102.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448           82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID  161 (463)
Q Consensus        82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~  161 (463)
                      ...+..++......|-..||..+..++.+-...-    +... ..++|.++.+++++..-+...|..+|..+.++-+.  
T Consensus        55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~----~~~~-~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~--  127 (228)
T PF12348_consen   55 LDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF----EPYA-DILLPPLLKKLGDSKKFIREAANNALDAIIESCSY--  127 (228)
T ss_dssp             -HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG----HHHH-HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH----HHHH-HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc--
Confidence            3678889999999999999999988887653221    1112 25889999999999999999999999999988641  


Q ss_pred             ccccCCC-cchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHh----hccHHHHHhhcCCCCcHHHHHhHHHHH
Q 012448          162 IIFPADN-KAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFK----ANLLTLLEEGVSKKNDTLETLSILELL  236 (463)
Q Consensus       162 ~l~~~~~-~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~----sgl~~~ll~eL~~~~DvLv~lnalell  236 (463)
                         .+.+ ..  .+.....++|..+|.++.+++..+...-++....+..    ..+.+.+...+.| .|.-||.+|-+++
T Consensus       128 ---~~~~~~~--~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D-~~~~VR~~Ar~~~  201 (228)
T PF12348_consen  128 ---SPKILLE--ILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSD-ADPEVREAARECL  201 (228)
T ss_dssp             -----HHHHH--HHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTS-S-HHHHHHHHHHH
T ss_pred             ---HHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCC-CCHHHHHHHHHHH
Confidence               2233 33  5666778999999999999999998776622222222    2477888889999 9999999999999


Q ss_pred             HHHHh-hHHHHH
Q 012448          237 YELAE-IQHSAE  247 (463)
Q Consensus       237 ~eLa~-t~~g~~  247 (463)
                      ..+.+ .+.-++
T Consensus       202 ~~l~~~~~~~a~  213 (228)
T PF12348_consen  202 WALYSHFPERAE  213 (228)
T ss_dssp             HHHHHHH-HHH-
T ss_pred             HHHHHHCCHhhc
Confidence            99987 555443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=0.0051  Score=62.42  Aligned_cols=220  Identities=13%  Similarity=0.150  Sum_probs=162.4

Q ss_pred             ChHHHHHHHhcCChHHHHHccccCCCCcc-hHHHHHHHHHHHhc---------ccccc--ch-----hhchHHHHHHhhc
Q 012448           28 NDAAAKKFLDRFPLSVILNTLQTKPDVPG-LEDTLVVCLERIFK---------TKYGA--SL-----IPHYMPFVQVGLT   90 (463)
Q Consensus        28 s~~~~~~~~~~~~l~~L~~~L~~~~~~~~-~~~~~~~vL~~il~---------~~~~~--~l-----~~~~~~~l~~gL~   90 (463)
                      +|-.=..|++.-.+|.+...|+...  +. .+..++..++-++-         .-|+-  .+     +.-+.+.++.|+.
T Consensus       178 hE~nrQ~~m~~~il~Li~~~l~~~g--k~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d  255 (461)
T KOG4199|consen  178 HEVNRQLFMELKILELILQVLNREG--KTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGID  255 (461)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHcccC--ccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCC
Confidence            4555566778888999998998876  33 45566666666531         11211  01     1112555666665


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC-Cc---hHHHHHHHHHHHHHhCCCCCccccccC
Q 012448           91 ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN-GN---EEVATASMDAIKKLAGFPNGIDIIFPA  166 (463)
Q Consensus        91 h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d-~d---~~va~~A~~~L~~lak~~~~l~~l~~~  166 (463)
                         |.+=.-.+.++++++-++    + +++.+.+.|=+..++.|+.| .+   -++++.+.+.|..||.+..-=..|+..
T Consensus       256 ---p~~L~~l~~tl~~lAVr~----E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~  327 (461)
T KOG4199|consen  256 ---PDSLVSLSTTLKALAVRD----E-ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEK  327 (461)
T ss_pred             ---ccHHHHHHHHHHHHHHHH----H-HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHh
Confidence               445555677888887665    4 89999999999999999998 33   347789999999999877554688888


Q ss_pred             CCcchhhHhhHhh--cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCC-CcHHHHHhHHHHHHHHHh-h
Q 012448          167 DNKAATDLGNLVA--QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKK-NDTLETLSILELLYELAE-I  242 (463)
Q Consensus       167 ~~~~~~~L~~~~~--~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~-~DvLv~lnalell~eLa~-t  242 (463)
                      +..+  .+..++.  ..|+.|=-.++.++.-|+-.|||.....++.|.=..++.-++-- .---||.|+.-+++.++. +
T Consensus       328 gg~~--~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs  405 (461)
T KOG4199|consen  328 GGLD--KIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS  405 (461)
T ss_pred             cChH--HHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh
Confidence            8888  7774444  44777888999999999999999999999999999999998762 356789999999999998 7


Q ss_pred             HHHHHHHHhcchHHHHH
Q 012448          243 QHSAEFLSRTTLLQLLC  259 (463)
Q Consensus       243 ~~g~~~L~~~gi~~~L~  259 (463)
                      .+...-+...|+-+.|.
T Consensus       406 ~~~~~~~l~~GiE~Li~  422 (461)
T KOG4199|consen  406 AENRTILLANGIEKLIR  422 (461)
T ss_pred             hhccchHHhccHHHHHH
Confidence            66666666666555443

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.48  E-value=0.0089  Score=62.36  Aligned_cols=237  Identities=16%  Similarity=0.175  Sum_probs=166.5

Q ss_pred             chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchH--HHHHHHHHHHHH
Q 012448           76 SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEE--VATASMDAIKKL  153 (463)
Q Consensus        76 ~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~--va~~A~~~L~~l  153 (463)
                      .....+.+.++..+-+++..||..+.+.+.+++.+.    . ..+.+.+.++-.+|+.|+.-+...  =..+|.+.+.++
T Consensus        21 ~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~----~-~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~   95 (371)
T PF14664_consen   21 LVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE----E-SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAF   95 (371)
T ss_pred             hhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH----H-HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHH
Confidence            344556777887777777999999999999988765    3 677788888888889888776543  234899999999


Q ss_pred             hCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHH
Q 012448          154 AGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSIL  233 (463)
Q Consensus       154 ak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnal  233 (463)
                      .....|.+. ++.++..  .+...+.+.+|..|.=..|.+++++-..|++.   ..+|-+..+++-+-+ .-.=+.-.++
T Consensus        96 l~~~~~~~~-~~~~vvr--alvaiae~~~D~lr~~cletL~El~l~~P~lv---~~~gG~~~L~~~l~d-~~~~~~~~l~  168 (371)
T PF14664_consen   96 LEIKKGPKE-IPRGVVR--ALVAIAEHEDDRLRRICLETLCELALLNPELV---AECGGIRVLLRALID-GSFSISESLL  168 (371)
T ss_pred             HHhcCCccc-CCHHHHH--HHHHHHhCCchHHHHHHHHHHHHHHhhCHHHH---HHcCCHHHHHHHHHh-ccHhHHHHHH
Confidence            888777653 3555554  66668889999999999999999999999764   455778887777765 2111566778


Q ss_pred             HHHHHHHhhHHHHHHHHhcchHHHHHHHhccc-----ccch---hhhhhhhhHhhhhccccccchhcchhhhhhhHHHHH
Q 012448          234 ELLYELAEIQHSAEFLSRTTLLQLLCSLIGNS-----ATET---ILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAID  305 (463)
Q Consensus       234 ell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~-----~~dp---l~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~  305 (463)
                      ..+-.+-.+|.-.+|+-..--++.+..-..+.     +.+.   ..+.-+..++..+..+.|++.|-...+ ++.-..++
T Consensus       169 ~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~  247 (371)
T PF14664_consen  169 DTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVD  247 (371)
T ss_pred             HHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc-hHHHHHHH
Confidence            88888889999999999877777777666655     2222   223344566777778878764421101 22223333


Q ss_pred             HHhccccCCChhhhhHHHHHHHhh
Q 012448          306 GRLGFLQSQDSDECESALEALGQI  329 (463)
Q Consensus       306 ~~f~~~~~~d~~~~~~A~dtlG~I  329 (463)
                          .+.-+.+.++...+|.+-.+
T Consensus       248 ----~L~~p~~~ir~~Ildll~dl  267 (371)
T PF14664_consen  248 ----SLRLPNPEIRKAILDLLFDL  267 (371)
T ss_pred             ----HHcCCCHHHHHHHHHHHHHH
Confidence                44556666777777776544

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.014  Score=64.84  Aligned_cols=179  Identities=13%  Similarity=0.130  Sum_probs=106.0

Q ss_pred             ccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHH------
Q 012448           70 KTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVA------  143 (463)
Q Consensus        70 ~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va------  143 (463)
                      +...++++++.+.+.+++-|+|++|-||.=|+-...|++++.   .. +++.++.+.     ...|.|.+.+|=      
T Consensus       132 g~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~---P~-l~e~f~~~~-----~~lL~ek~hGVL~~~l~l  202 (866)
T KOG1062|consen  132 GNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV---PD-LVEHFVIAF-----RKLLCEKHHGVLIAGLHL  202 (866)
T ss_pred             hccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC---ch-HHHHhhHHH-----HHHHhhcCCceeeeHHHH
Confidence            344788999999999999999999999999999999999887   55 666554321     122223333322      


Q ss_pred             -------------------HHHHHHHHHHh--CCCCCc--cccccCCCcc--hhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448          144 -------------------TASMDAIKKLA--GFPNGI--DIIFPADNKA--ATDLGNLVAQCSSLGRVRVLSLIVKLFS  198 (463)
Q Consensus       144 -------------------~~A~~~L~~la--k~~~~l--~~l~~~~~~~--~~~L~~~~~~~~~~vR~Rv~el~v~ia~  198 (463)
                                         ..=+.+|+.+.  +.+|+-  .-|-||-++-  -+.|+ ++.+.|....=--++++.++|.
T Consensus       203 ~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLr-iLGq~d~daSd~M~DiLaqvat  281 (866)
T KOG1062|consen  203 ITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLR-ILGQNDADASDLMNDILAQVAT  281 (866)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHH-HhcCCCccHHHHHHHHHHHHHh
Confidence                               23334444442  223332  2233332221  01222 4556666555556677777776


Q ss_pred             cCHHH--------HHHHH-------hh-------ccH----------------------------------HHHHhhcCC
Q 012448          199 VSRSV--------ASVIF-------KA-------NLL----------------------------------TLLEEGVSK  222 (463)
Q Consensus       199 ~S~~~--------~~~v~-------~s-------gl~----------------------------------~~ll~eL~~  222 (463)
                      ..+..        .|.|.       ++       +++                                  .-++.||+|
T Consensus       282 ntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~D  361 (866)
T KOG1062|consen  282 NTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKD  361 (866)
T ss_pred             cccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcC
Confidence            42111        11000       00       111                                  246789999


Q ss_pred             CCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhccc
Q 012448          223 KNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNS  265 (463)
Q Consensus       223 ~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~  265 (463)
                       .|+-.|.-++|+++-|...+.-      ..+++.|.+++..+
T Consensus       362 -pD~SIkrralELs~~lvn~~Nv------~~mv~eLl~fL~~~  397 (866)
T KOG1062|consen  362 -PDVSIKRRALELSYALVNESNV------RVMVKELLEFLESS  397 (866)
T ss_pred             -CcHHHHHHHHHHHHHHhccccH------HHHHHHHHHHHHhc
Confidence             9999999999999998874321      24556666666665

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.0098  Score=60.74  Aligned_cols=171  Identities=16%  Similarity=0.142  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHhccccccc-hh-hchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhh
Q 012448           58 EDTLVVCLERIFKTKYGAS-LI-PHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCL  135 (463)
Q Consensus        58 ~~~~~~vL~~il~~~~~~~-l~-~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l  135 (463)
                      ++-+=+-|+-+....+.+- +. -.....+...|+|+++.||++|+|-||.++.|+   +. +.+.+...+.++-++.-+
T Consensus       100 ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNN---P~-~Qe~v~E~~~L~~Ll~~l  175 (342)
T KOG2160|consen  100 KEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNN---PK-SQEQVIELGALSKLLKIL  175 (342)
T ss_pred             HHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcC---HH-HHHHHHHcccHHHHHHHH
Confidence            3333334444444444442 21 123666666999999999999999999999999   77 778888888888887544


Q ss_pred             -cCCchHHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhc--CCchhHHHHHHHHHHHHhcCHHHHHHHHhhc
Q 012448          136 -INGNEEVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQ--CSSLGRVRVLSLIVKLFSVSRSVASVIFKAN  211 (463)
Q Consensus       136 -~d~d~~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~--~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sg  211 (463)
                       .+....+.++|.-+++.+-++.+ |....+..+...  -|++.+.+  .+-..|+++..++..+......--+.. .+-
T Consensus       176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~--~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~-~~~  252 (342)
T KOG2160|consen  176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQ--VLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA-SSL  252 (342)
T ss_pred             ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHH--HHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH-HHh
Confidence             56677788999999999977776 887788888877  88877777  566777888999988887766555533 334


Q ss_pred             cHHHHHhhcCCCCcHHHHHhHHHH
Q 012448          212 LLTLLEEGVSKKNDTLETLSILEL  235 (463)
Q Consensus       212 l~~~ll~eL~~~~DvLv~lnalel  235 (463)
                      .|+..+..+....|-=++-+++.-
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~  276 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTA  276 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHH
Confidence            444444444333555555555543

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=97.29  E-value=0.14  Score=53.81  Aligned_cols=383  Identities=18%  Similarity=0.124  Sum_probs=213.2

Q ss_pred             HHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHh-hcCCCHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 012448           42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVG-LTADSHSVKRLACKTVTCLLEDSDLEASCALQ  120 (463)
Q Consensus        42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~g-L~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~  120 (463)
                      ...+.-|+.+. +....+...-|+...+++  ++.....-.+.++.| ....+..|+....+.+..+..+.-.-.. ...
T Consensus         6 sD~lkKLKiTa-Vd~teds~~~C~~~~~qa--~a~~nt~t~ek~~~~~i~~~~~tv~~~qssC~A~~sk~ev~r~~-F~~   81 (604)
T KOG4500|consen    6 SDTLKKLKITA-VDKTEDSLEGCLDCLLQA--LAQNNTETSEKIQASGIMTASDTVYLFQSSCLADRSKNEVERSL-FRN   81 (604)
T ss_pred             HHHHHHhhccc-cCcccchhHHHHHHHHHh--HhhhChhhHHHHHhcceeeccchhhhhhHHHHHHHhhhHHHHHH-HHH
Confidence            34445555543 222233334466666443  332222234444544 4455778888777666666543311112 444


Q ss_pred             HhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCC----cchhhHhhHhhcCCc----hhHHHHHH
Q 012448          121 LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADN----KAATDLGNLVAQCSS----LGRVRVLS  191 (463)
Q Consensus       121 ~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~----~~~~~L~~~~~~~~~----~vR~Rv~e  191 (463)
                      .+++++++..+.+....||++|-..--.+|.+++-.+.+- ..+|..+.    ++  .|++. -..+.    ..---.+.
T Consensus        82 ~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid--~L~~~-cs~d~~ane~~~~v~~g  158 (604)
T KOG4500|consen   82 YCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVID--VLKPY-CSKDNPANEEYSAVAFG  158 (604)
T ss_pred             HhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHh--hhccc-cccCCccHHHHHHHHHH
Confidence            6788999999999999999999999999999999887644 56666555    33  44422 11221    22222344


Q ss_pred             HHHHHHhcCHHHHHHHHhhccHHHHHhhcCC-------CCcHHH-HHhH-------------------------------
Q 012448          192 LIVKLFSVSRSVASVIFKANLLTLLEEGVSK-------KNDTLE-TLSI-------------------------------  232 (463)
Q Consensus       192 l~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~-------~~DvLv-~lna-------------------------------  232 (463)
                      ++.+-.--|++...-+.+.|+++.+..-+.=       +.|.|+ -.|-                               
T Consensus       159 ~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~  238 (604)
T KOG4500|consen  159 VLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVRE  238 (604)
T ss_pred             HHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhcc
Confidence            5556666666666667777777644332210       012221 1233                               


Q ss_pred             ------HHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccc---hhcchh--hhhhhH
Q 012448          233 ------LELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSH---MFIDES--SAKTVI  301 (463)
Q Consensus       233 ------lell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~---~~~~~~--~~k~~p  301 (463)
                            +|++...|++..---.+++.|.+.-+++++.+.+.+.- .+-.   ...++--.+..   -..|++  ..-.-|
T Consensus       239 d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~-k~d~---~~l~k~~~el~vllltGDeSMq~L~~~p  314 (604)
T KOG4500|consen  239 DIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTK-KTDM---LNLFKRIAELDVLLLTGDESMQKLHADP  314 (604)
T ss_pred             chhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccc-hHHH---HHHHHhhhhHhhhhhcCchHHHHHhcCc
Confidence                  33333333333333345566777777777766332211 0000   00111000110   012232  122367


Q ss_pred             HHHHHHhccccCCChhhhhHHHHHHHhhcCCHHH-HHHHhhcCchhHHHHHHHHHhhc-c--chh-hHhHHhhhHHHhcC
Q 012448          302 SAIDGRLGFLQSQDSDECESALEALGQIGSSIQG-ATLLLLCLPPAARHVIDAAFDRQ-G--HGK-QLAALHGLANIAGK  376 (463)
Q Consensus       302 ~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eG-k~~L~~~~~~~~~~~l~~~~~~~-~--~~~-k~r~L~al~~Il~~  376 (463)
                      ++++.+.+-+.|+|...+-++.=++|+++++... .++++++   .+...+....+.- -  +.. +.+|+.||-++.-.
T Consensus       315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~---~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP  391 (604)
T KOG4500|consen  315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKD---FLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP  391 (604)
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHH---HHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence            7888888888999999999999999999998776 5666654   6666666655522 2  222 78899999887753


Q ss_pred             CCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhhhccchhHhhc
Q 012448          377 TRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVT  455 (463)
Q Consensus       377 ~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~~gfie~ll  455 (463)
                      .......+.-.=+|. +.                 ..+.+. -||.=.....+|++.  -.|+....++..+|..+|-|.
T Consensus       392 v~nka~~~~aGvtea-IL-----------------~~lk~~~ppv~fkllgTlrM~~--d~qe~~a~eL~kn~~l~ekLv  451 (604)
T KOG4500|consen  392 VSNKAHFAPAGVTEA-IL-----------------LQLKLASPPVTFKLLGTLRMIR--DSQEYIACELAKNPELFEKLV  451 (604)
T ss_pred             CCchhhccccchHHH-HH-----------------HHHHhcCCcchHHHHHHHHHHH--hchHHHHHHHhcCHHHHHHHH
Confidence            211100100000111 11                 122233 347777777777764  467778888999999999888


Q ss_pred             CCC
Q 012448          456 DAS  458 (463)
Q Consensus       456 dr~  458 (463)
                      |=+
T Consensus       452 ~Ws  454 (604)
T KOG4500|consen  452 DWS  454 (604)
T ss_pred             Hhh
Confidence            754

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.015  Score=64.97  Aligned_cols=256  Identities=11%  Similarity=0.080  Sum_probs=195.6

Q ss_pred             ChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc--hhh--chHHH
Q 012448            9 DSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS--LIP--HYMPF   84 (463)
Q Consensus         9 ~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~--l~~--~~~~~   84 (463)
                      |+.+=+++.+++-------+|+.+--|--+--.|.|+..|+.++ +.++..++|-+|..+++..+...  +..  .+.-+
T Consensus       181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~-n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl  259 (1051)
T KOG0168|consen  181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEH-NFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVL  259 (1051)
T ss_pred             ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHhhccchhheeecccchHHH
Confidence            77777778777654433336666555555555788899999875 47889999999999999886642  222  35777


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC--Cccc
Q 012448           85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN--GIDI  162 (463)
Q Consensus        85 l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~--~l~~  162 (463)
                      +++-++=..-.|-|-++.++-+|.+..   ..    .+.++|.+..++.-+----+.+-+.|+.+-.++++.-+  ..+.
T Consensus       260 ~~kL~~IeyiDvAEQ~LqALE~iSR~H---~~----AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~  332 (1051)
T KOG0168|consen  260 LEKLLTIEYIDVAEQSLQALEKISRRH---PK----AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHF  332 (1051)
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHHHhhc---cH----HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchH
Confidence            888888889999999999999998644   22    45577888888888877788889999999999987653  3333


Q ss_pred             cccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH---HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHH---HHhHHHHH
Q 012448          163 IFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL---FSVSRSVASVIFKANLLTLLEEGVSKKNDTLE---TLSILELL  236 (463)
Q Consensus       163 l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i---a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv---~lnalell  236 (463)
                      +.  +.++  .|.+++...+.+.---+|-++..|   +.|.++.++-+..-|+++.+...|.-++=+|-   .--++-||
T Consensus       333 v~--ealP--lL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrml  408 (1051)
T KOG0168|consen  333 VM--EALP--LLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRML  408 (1051)
T ss_pred             HH--HHHH--HHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHH
Confidence            33  4677  899999999999888888888777   47899999999999999999888876333332   23456788


Q ss_pred             HHHHh-hHHHHHHHHhcchHHHHHHHhcccc-------cchhhhhhhh
Q 012448          237 YELAE-IQHSAEFLSRTTLLQLLCSLIGNSA-------TETILRSRAI  276 (463)
Q Consensus       237 ~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~-------~dpl~r~~ai  276 (463)
                      .-++. ++-++.-|.+.+|.+-|-.++.+..       .+++.|+|.=
T Consensus       409 s~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pne  456 (1051)
T KOG0168|consen  409 SLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNE  456 (1051)
T ss_pred             HHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHH
Confidence            88888 7999999999999999999987643       4566666654

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.011  Score=65.86  Aligned_cols=214  Identities=19%  Similarity=0.222  Sum_probs=154.6

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHH-hccccc--cchhhchHHHHHHhhcCC-CHHHHHHHHHHHHHHHhCCchhH
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERI-FKTKYG--ASLIPHYMPFVQVGLTAD-SHSVKRLACKTVTCLLEDSDLEA  115 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~i-l~~~~~--~~l~~~~~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~~~~~  115 (463)
                      ...+|+..|+...|...+.+.+...-+-+ |.+-..  ..-...+.+.|+.-|+|. +..+--+||+++.++.+--   +
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl---P  244 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL---P  244 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc---c
Confidence            67788888987765555666555533332 222222  234556789999999987 8999999999999998866   5


Q ss_pred             HHHHHHhhccCcHHHHHHhhcC-CchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHH
Q 012448          116 SCALQLLIDYEIYPLLLDCLIN-GNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIV  194 (463)
Q Consensus       116 ~~~~~~~~~~~l~~~li~~l~d-~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v  194 (463)
                      . ....+|+++.+|.++..|.. +=+-||..+..+|++|++-.+  .++..++.+. ..|. .+.--+-.+.+-++.+++
T Consensus       245 ~-S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~-a~Ls-ylDFFSi~aQR~Alaiaa  319 (1051)
T KOG0168|consen  245 R-SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALS-AVLS-YLDFFSIHAQRVALAIAA  319 (1051)
T ss_pred             c-hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHH-HHHH-HHHHHHHHHHHHHHHHHH
Confidence            5 77899999999999865544 346799999999999998775  4566667765 1222 333345567888899999


Q ss_pred             HHHh-cCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh----hHHHHHHHHhcchHHHHHHHhcc
Q 012448          195 KLFS-VSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE----IQHSAEFLSRTTLLQLLCSLIGN  264 (463)
Q Consensus       195 ~ia~-~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~----t~~g~~~L~~~gi~~~L~~~i~~  264 (463)
                      ++++ .++|.+..++  +.+|.|-.-|.. .|--+-.++.-++..++.    .++-.+-|.+.|++..+..++.-
T Consensus       320 N~Cksi~sd~f~~v~--ealPlL~~lLs~-~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv  391 (1051)
T KOG0168|consen  320 NCCKSIRSDEFHFVM--EALPLLTPLLSY-QDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSV  391 (1051)
T ss_pred             HHHhcCCCccchHHH--HHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence            9986 4788888888  478888888888 666666666667777766    44455666777888888777764

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.04  E-value=0.0067  Score=56.55  Aligned_cols=132  Identities=17%  Similarity=0.294  Sum_probs=89.4

Q ss_pred             cchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHh
Q 012448           55 PGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDC  134 (463)
Q Consensus        55 ~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~  134 (463)
                      |..+..+.-++.-+. ..+ +.+...+.+.+..+|.+++|.||.-|+..+.+++.++   -.     -+...++..++.|
T Consensus         2 ~~vR~n~i~~l~DL~-~r~-~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~i-----k~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLC-IRY-PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED---MI-----KVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHH-HhC-cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---ce-----eehhhhhHHHHHH
Confidence            345555666665441 223 3566679999999999999999999999999998765   11     1122455778889


Q ss_pred             hcCCchHHHHHHHHHHHHHhCC-CC-CccccccCCCcchhhHhhHhh-----cCCchhHHHHHHHHHHHHhc
Q 012448          135 LINGNEEVATASMDAIKKLAGF-PN-GIDIIFPADNKAATDLGNLVA-----QCSSLGRVRVLSLIVKLFSV  199 (463)
Q Consensus       135 l~d~d~~va~~A~~~L~~lak~-~~-~l~~l~~~~~~~~~~L~~~~~-----~~~~~vR~Rv~el~v~ia~~  199 (463)
                      +.|++..|+..|...+.++++. .+ -+...|.. .+.  .|.....     ..+..-|.++|..+.+--+.
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e-~i~--~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~  140 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLKKRNPNIIYNNFPE-LIS--SLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK  140 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHH--HHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence            9999999999999999999887 22 22222211 111  2221101     24666788999988877765

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=97.02  E-value=0.33  Score=51.59  Aligned_cols=326  Identities=14%  Similarity=0.112  Sum_probs=196.0

Q ss_pred             HHHHhhhhccCCCCCChHHHHHHHhc-----CChHHHHHccccCCCCcchHHHHHHHHHHHhccc---cccchhhchHHH
Q 012448           13 LLDSASDFAYHPGVQNDAAAKKFLDR-----FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTK---YGASLIPHYMPF   84 (463)
Q Consensus        13 ~~~~~~~~a~~p~~~s~~~~~~~~~~-----~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~---~~~~l~~~~~~~   84 (463)
                      ++....|+-+.    .+..++-|.+.     .+..+++..|+.++  .+....++.+|..++...   .+....+.+.+.
T Consensus        74 vL~Li~dll~~----~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d--~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~  147 (429)
T cd00256          74 VLTLIDDMLQE----DDTRVKLFHDDALLKKKTWEPFFNLLNRQD--QFIVHMSFSILAKLACFGLAKMEGSDLDYYFNW  147 (429)
T ss_pred             HHHHHHHHHHh----chHHHHHHHHHhhccccchHHHHHHHcCCc--hhHHHHHHHHHHHHHhcCccccchhHHHHHHHH
Confidence            34445555555    55666666654     68888999888654  788899999999997532   122334445667


Q ss_pred             HHHhhcCC-CHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC--CchHHHHHHHHHHHHHhCCCCCcc
Q 012448           85 VQVGLTAD-SHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN--GNEEVATASMDAIKKLAGFPNGID  161 (463)
Q Consensus        85 l~~gL~h~-~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d--~d~~va~~A~~~L~~lak~~~~l~  161 (463)
                      +..-|+.+ +...+..++..++.+++..    . ....+.+++.++.++..|..  ...++--.++=++.-++=++++.+
T Consensus       148 l~~~l~~~~~~~~~~~~v~~L~~LL~~~----~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~  222 (429)
T cd00256         148 LKEQLNNITNNDYVQTAARCLQMLLRVD----E-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE  222 (429)
T ss_pred             HHHHhhccCCcchHHHHHHHHHHHhCCc----h-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH
Confidence            77777755 4777788888899988876    3 55677777888999988864  245777888888888877777667


Q ss_pred             ccccCCCcchhhHhhHhh-cCCchhHHHHHHHHHHHHhcC------HHHHHHHHhhccHHHHHhh----cCCCCcHHHHH
Q 012448          162 IIFPADNKAATDLGNLVA-QCSSLGRVRVLSLIVKLFSVS------RSVASVIFKANLLTLLEEG----VSKKNDTLETL  230 (463)
Q Consensus       162 ~l~~~~~~~~~~L~~~~~-~~~~~vR~Rv~el~v~ia~~S------~~~~~~v~~sgl~~~ll~e----L~~~~DvLv~l  230 (463)
                      .....+.++  .|.+.+. ...++|=+=++.++.++...+      ......+++.|+.+.+-.-    ..| +|+.--+
T Consensus       223 ~~~~~~~i~--~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~D-edL~edl  299 (429)
T cd00256         223 VLKRLSLIQ--DLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDD-EDLTDDL  299 (429)
T ss_pred             hhccccHHH--HHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCc-HHHHHHH
Confidence            666667777  6664443 335666666777888888854      3455677777887643222    333 4433222


Q ss_pred             hHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccc--cchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHh
Q 012448          231 SILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSA--TETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRL  308 (463)
Q Consensus       231 nalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~--~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f  308 (463)
                      +.+        ....-+++.+-.-++.=..-+..-.  =.|.=+     --.|-.  .|+.+|-+    ++| ..+..+.
T Consensus       300 ~~L--------~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~-----se~FW~--EN~~kf~~----~~~-~llk~L~  359 (429)
T cd00256         300 KFL--------TEELKNSVQDLSSFDEYKSELRSGRLHWSPVHK-----SEKFWR--ENADRLNE----KNY-ELLKILI  359 (429)
T ss_pred             HHH--------HHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCC-----CchHHH--HHHHHHHh----cch-HHHHHHH
Confidence            221        2222233333344444333332111  011000     001111  13334322    222 3344444


Q ss_pred             ccc-cCCChhhhhHHHHHHHhhcC-CHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhc
Q 012448          309 GFL-QSQDSDECESALEALGQIGS-SIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAG  375 (463)
Q Consensus       309 ~~~-~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~  375 (463)
                      +.+ .++|+..+++|.-=+|++.+ -++|+..+.+- | .=..+|+.+.+. -..-|-.||.|+..|+.
T Consensus       360 ~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~l-g-~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~  425 (429)
T cd00256         360 HLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQL-G-GKQRVMRLLNHE-DPNVRYEALLAVQKLMV  425 (429)
T ss_pred             HHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHc-C-cHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            455 57899999999999999998 78899999874 3 223355544432 11227777777776653

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.80  E-value=0.28  Score=53.43  Aligned_cols=272  Identities=13%  Similarity=0.123  Sum_probs=164.3

Q ss_pred             HHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHH------
Q 012448           43 VILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS------  116 (463)
Q Consensus        43 ~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~------  116 (463)
                      .+++.|++-.  +.+...+..||............ ..+.+.+.+.++.++-.=|.-+.+.+...+.+.....-      
T Consensus       100 ~~~~~~~tps--~~~q~~~~~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l  176 (569)
T KOG1242|consen  100 ILLEELDTPS--KSVQRAVSTCLPPLVVLSKGLSG-EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFL  176 (569)
T ss_pred             HHHHhcCCCc--HHHHHHHHHHhhhHHHHhhccCH-HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHH
Confidence            4455555433  34444555566655433322222 12456666666666666666666666555544320000      


Q ss_pred             -HHHH--------------------------Hhhcc---CcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC--Cccccc
Q 012448          117 -CALQ--------------------------LLIDY---EIYPLLLDCLINGNEEVATASMDAIKKLAGFPN--GIDIIF  164 (463)
Q Consensus       117 -~~~~--------------------------~~~~~---~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~--~l~~l~  164 (463)
                       ++..                          ....+   .++|.++.|.+|....|...|..+.+.+-.+.+  |.+.+.
T Consensus       177 ~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ll  256 (569)
T KOG1242|consen  177 DNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLL  256 (569)
T ss_pred             HHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhh
Confidence             0000                          00111   578889999999999999999999999966654  445555


Q ss_pred             cCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHH
Q 012448          165 PADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQH  244 (463)
Q Consensus       165 ~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~  244 (463)
                      ++.+.   .+...    +=.-|.-+.+++--++.+.+..++.|. ..++|.+..-|.| .++-+|..+.+++..+++.-.
T Consensus       257 psll~---~l~~~----kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~D-T~~evr~a~~~~l~~~~svid  327 (569)
T KOG1242|consen  257 PSLLG---SLLEA----KWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWD-TKPEVRKAGIETLLKFGSVID  327 (569)
T ss_pred             hhhHH---HHHHH----hhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHcc-CCHHHHHHHHHHHHHHHHhhc
Confidence            43332   22211    223466778888888999999999986 5899999999999 999999999999999998543


Q ss_pred             HHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchh-hhhhhHHHHHHHhccccCCChhhhhHHH
Q 012448          245 SAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDES-SAKTVISAIDGRLGFLQSQDSDECESAL  323 (463)
Q Consensus       245 g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~-~~k~~p~~l~~~f~~~~~~d~~~~~~A~  323 (463)
                      ...       +++++..+.+.-.||--+++.   .+-.+....++++++.| +..=.|....    -+.+.+..++-.++
T Consensus       328 N~d-------I~~~ip~Lld~l~dp~~~~~e---~~~~L~~ttFV~~V~~psLalmvpiL~R----~l~eRst~~kr~t~  393 (569)
T KOG1242|consen  328 NPD-------IQKIIPTLLDALADPSCYTPE---CLDSLGATTFVAEVDAPSLALMVPILKR----GLAERSTSIKRKTA  393 (569)
T ss_pred             cHH-------HHHHHHHHHHHhcCcccchHH---HHHhhcceeeeeeecchhHHHHHHHHHH----HHhhccchhhhhHH
Confidence            333       445554444444555312111   22222222456667665 4442333333    34566677778888


Q ss_pred             HHHHhhcCCHHHHHHHh
Q 012448          324 EALGQIGSSIQGATLLL  340 (463)
Q Consensus       324 dtlG~Igss~eGk~~L~  340 (463)
                      ..+|+.++-++-.+-+.
T Consensus       394 ~IidNm~~LveDp~~la  410 (569)
T KOG1242|consen  394 IIIDNMCKLVEDPKDLA  410 (569)
T ss_pred             HHHHHHHHhhcCHHHHh
Confidence            88999998664444443

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.78  E-value=0.0046  Score=59.28  Aligned_cols=131  Identities=18%  Similarity=0.205  Sum_probs=86.8

Q ss_pred             hhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhch-HHHHHHhhcCCCHHH
Q 012448           18 SDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHY-MPFVQVGLTADSHSV   96 (463)
Q Consensus        18 ~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~-~~~l~~gL~h~~~~V   96 (463)
                      ++++.+.|.+=+..+.     .-+|.|+..+.+++  +.+++.+..+|..+...-+   ..+++ .+.+..|.+|.++.|
T Consensus        78 ~~l~~~l~~~~~~~~~-----~~l~~Ll~~~~~~~--~~i~~~a~~~L~~i~~~~~---~~~~~~~~~l~~~~~~Kn~~v  147 (228)
T PF12348_consen   78 SDLARQLGSHFEPYAD-----ILLPPLLKKLGDSK--KFIREAANNALDAIIESCS---YSPKILLEILSQGLKSKNPQV  147 (228)
T ss_dssp             HHHHHHHGGGGHHHHH-----HHHHHHHHGGG-----HHHHHHHHHHHHHHHTTS----H--HHHHHHHHHHTT-S-HHH
T ss_pred             HHHHHHHhHhHHHHHH-----HHHHHHHHHHcccc--HHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHhCCCHHH
Confidence            4555553333333333     34689999999877  7888899999999976544   22344 889999999999999


Q ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448           97 KRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN  158 (463)
Q Consensus        97 r~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~  158 (463)
                      |..++..+..++.....+...+..-..=..+.+.+..++.|++.+|-..|-.++..+.++.|
T Consensus       148 R~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  148 REECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             HHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            99999999999987631011011100003588999999999999999999999999977765

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.72  E-value=0.0059  Score=49.22  Aligned_cols=86  Identities=21%  Similarity=0.299  Sum_probs=64.3

Q ss_pred             hHHHHHcc-ccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448           41 LSVILNTL-QTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL  119 (463)
Q Consensus        41 l~~L~~~L-~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~  119 (463)
                      +|.|+..| ++.+  +..+..++.+|..+    .    .++..+.|...++++++.||..++++++++-      ..   
T Consensus         1 i~~L~~~l~~~~~--~~vr~~a~~~L~~~----~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~---   61 (88)
T PF13646_consen    1 IPALLQLLQNDPD--PQVRAEAARALGEL----G----DPEAIPALIELLKDEDPMVRRAAARALGRIG------DP---   61 (88)
T ss_dssp             HHHHHHHHHTSSS--HHHHHHHHHHHHCC----T----HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HH---
T ss_pred             CHHHHHHHhcCCC--HHHHHHHHHHHHHc----C----CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CH---
Confidence            57889989 5444  77888888888844    1    2356888888999999999999999999851      12   


Q ss_pred             HHhhccCcHHHHHHhhcCCc-hHHHHHHHHHHH
Q 012448          120 QLLIDYEIYPLLLDCLINGN-EEVATASMDAIK  151 (463)
Q Consensus       120 ~~~~~~~l~~~li~~l~d~d-~~va~~A~~~L~  151 (463)
                            +.++.+...+.+++ ..|...|+.+|.
T Consensus        62 ------~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   62 ------EAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ------HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                  46777888787754 556888888774

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.02  Score=62.93  Aligned_cols=199  Identities=16%  Similarity=0.218  Sum_probs=131.5

Q ss_pred             HHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 012448           30 AAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLE  109 (463)
Q Consensus        30 ~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~  109 (463)
                      +.||++.     +.+|..|++.-  |+.++.+..+|-|+|- ++|..+-+. .+-|..-|+.|||+|...|.+-++.+++
T Consensus       140 dLARDLa-----~Dv~tLL~ssk--pYvRKkAIl~lykvFL-kYPeAlr~~-FprL~EkLeDpDp~V~SAAV~VICELAr  210 (877)
T KOG1059|consen  140 DLARDLA-----DDVFTLLNSSK--PYVRKKAILLLYKVFL-KYPEALRPC-FPRLVEKLEDPDPSVVSAAVSVICELAR  210 (877)
T ss_pred             hhhHHHH-----HHHHHHHhcCc--hHHHHHHHHHHHHHHH-hhhHhHhhh-HHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence            5666654     57899999876  8999999998888874 356666664 4556777999999999999999999998


Q ss_pred             CCch-----hHHHHHHHhhccC---cHHHHH---HhhcCCchHHHHHHHHHHHHHhCCCCC-------ccccccCCCcc-
Q 012448          110 DSDL-----EASCALQLLIDYE---IYPLLL---DCLINGNEEVATASMDAIKKLAGFPNG-------IDIIFPADNKA-  170 (463)
Q Consensus       110 ~~~~-----~~~~~~~~~~~~~---l~~~li---~~l~d~d~~va~~A~~~L~~lak~~~~-------l~~l~~~~~~~-  170 (463)
                      ++--     .+. ...+++...   ++.=|+   ..|.-=|.-+.+.-+.-|.++-..+-.       +..|+..+... 
T Consensus       211 KnPknyL~LAP~-ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  211 KNPQNYLQLAPL-FYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             hCCcccccccHH-HHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence            7621     112 333333221   222122   122222333443333333333222211       11111110000 


Q ss_pred             -----------hhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHH
Q 012448          171 -----------ATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYEL  239 (463)
Q Consensus       171 -----------~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eL  239 (463)
                                 ..+|+-++...|.-+|+=.+-++.+|++..+.+-+.     .-+.++.||+| .|+-+|+-|+++++.+
T Consensus       290 ~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~D-kD~SIRlrALdLl~gm  363 (877)
T KOG1059|consen  290 MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDD-KDESIRLRALDLLYGM  363 (877)
T ss_pred             CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhcc-CCchhHHHHHHHHHHH
Confidence                       136777777889999999999999999999988654     56889999999 9999999999999999


Q ss_pred             HhhHH
Q 012448          240 AEIQH  244 (463)
Q Consensus       240 a~t~~  244 (463)
                      +....
T Consensus       364 VskkN  368 (877)
T KOG1059|consen  364 VSKKN  368 (877)
T ss_pred             hhhhh
Confidence            87544

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.68  E-value=0.055  Score=60.28  Aligned_cols=270  Identities=14%  Similarity=0.186  Sum_probs=178.3

Q ss_pred             ccCcHHHHHHhhcC----CchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhc
Q 012448          124 DYEIYPLLLDCLIN----GNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSV  199 (463)
Q Consensus       124 ~~~l~~~li~~l~d----~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~  199 (463)
                      +++++-++.+||+.    ++--|--.|..+|..|+  ++++-    +++.+  ...+++.+.++.+|..+.-|++++=..
T Consensus       101 ~qdvllLltNslknDL~s~nq~vVglAL~alg~i~--s~Ema----rdlap--eVe~Ll~~~~~~irKKA~Lca~r~irK  172 (866)
T KOG1062|consen  101 RQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC--SPEMA----RDLAP--EVERLLQHRDPYIRKKAALCAVRFIRK  172 (866)
T ss_pred             chHHHHHHHHHHHhhccCCCeeehHHHHHHhhccC--CHHHh----HHhhH--HHHHHHhCCCHHHHHHHHHHHHHHHHc
Confidence            45688888888764    45556667888888886  33331    23444  666788899999999999999999999


Q ss_pred             CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhH
Q 012448          200 SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMI  278 (463)
Q Consensus       200 S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili  278 (463)
                      .|++.+.     +++..-..|.+ .|.-|=+..+.++.++++ ++++..|-.+  .++.++.++.+..+-.+        
T Consensus       173 ~P~l~e~-----f~~~~~~lL~e-k~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~y--------  236 (866)
T KOG1062|consen  173 VPDLVEH-----FVIAFRKLLCE-KHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGY--------  236 (866)
T ss_pred             CchHHHH-----hhHHHHHHHhh-cCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCC--------
Confidence            9999875     45666667778 899999999999999999 8999988877  77777777766444333        


Q ss_pred             hhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhc
Q 012448          279 SGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQ  358 (463)
Q Consensus       279 ~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~  358 (463)
                          .+.-++....|. +.+ . ..+. +++.+-.+|++..+.--|-|+++++..|--+..-.   ..+=+.+..+++.-
T Consensus       237 ----speydv~gi~dP-FLQ-i-~iLr-lLriLGq~d~daSd~M~DiLaqvatntdsskN~Gn---AILYE~V~TI~~I~  305 (866)
T KOG1062|consen  237 ----SPEYDVHGISDP-FLQ-I-RILR-LLRILGQNDADASDLMNDILAQVATNTDSSKNAGN---AILYECVRTIMDIR  305 (866)
T ss_pred             ----CCccCccCCCch-HHH-H-HHHH-HHHHhcCCCccHHHHHHHHHHHHHhcccccccchh---HHHHHHHHHHHhcc
Confidence                121012221211 111 0 1121 34556778999999999999999985553221111   13445667777777


Q ss_pred             cchh-hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhH------HHHHHh-cCCHHHHHHHHHH
Q 012448          359 GHGK-QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSG------LFLSVL-QQAAEIRLAGYRM  430 (463)
Q Consensus       359 ~~~~-k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~------~~~~~~-qpF~elr~A~~~~  430 (463)
                      .++. |+.|.++|+.++...  ++|..-  =+=..|.+.+        ..+|..      .|+.-+ -|.+-||.=|+.+
T Consensus       306 ~~~~LrvlainiLgkFL~n~--d~NirY--vaLn~L~r~V--------~~d~~avqrHr~tIleCL~DpD~SIkrralEL  373 (866)
T KOG1062|consen  306 SNSGLRVLAINILGKFLLNR--DNNIRY--VALNMLLRVV--------QQDPTAVQRHRSTILECLKDPDVSIKRRALEL  373 (866)
T ss_pred             CCchHHHHHHHHHHHHhcCC--ccceee--eehhhHHhhh--------cCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            7766 999999999998854  222110  0000122222        223332      244444 8889999999999


Q ss_pred             HHHhhcCchh
Q 012448          431 ITGLVARPWC  440 (463)
Q Consensus       431 l~~l~~~~Wg  440 (463)
                      ..+|++-.--
T Consensus       374 s~~lvn~~Nv  383 (866)
T KOG1062|consen  374 SYALVNESNV  383 (866)
T ss_pred             HHHHhccccH
Confidence            9888876543

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.61  E-value=0.29  Score=52.90  Aligned_cols=280  Identities=16%  Similarity=0.144  Sum_probs=170.3

Q ss_pred             hccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHH
Q 012448           69 FKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMD  148 (463)
Q Consensus        69 l~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~  148 (463)
                      ++.+... ..++..+.+..|+..++..||--||..+-.+++-.   .  -.-+.--++++..+....+|.|.+|...| .
T Consensus        74 Lg~~~~~-Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~---k--~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-e  146 (675)
T KOG0212|consen   74 LGIKDAG-YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA---K--GEVLVYFNEIFDVLCKLSADSDQNVRGGA-E  146 (675)
T ss_pred             hccccHH-HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh---c--cCcccchHHHHHHHHHHhcCCccccccHH-H
Confidence            3344333 56778999999999999999999999988876532   1  11233445688888888999999997744 4


Q ss_pred             HHHHHhCCCC--CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcC-HHHHHHHHhhccHHHHHhhcCCCCc
Q 012448          149 AIKKLAGFPN--GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVS-RSVASVIFKANLLTLLEEGVSKKND  225 (463)
Q Consensus       149 ~L~~lak~~~--~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S-~~~~~~v~~sgl~~~ll~eL~~~~D  225 (463)
                      .|-++-|.-.  .....-=+..++  -|+..+-..|+..|.=+.+-+-.+-++- -+...+.  ..+++-+++-|.|..|
T Consensus       147 LLdRLikdIVte~~~tFsL~~~ip--LL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl--~~~ldGLf~~LsD~s~  222 (675)
T KOG0212|consen  147 LLDRLIKDIVTESASTFSLPEFIP--LLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYL--PSLLDGLFNMLSDSSD  222 (675)
T ss_pred             HHHHHHHHhccccccccCHHHHHH--HHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcc--hHHHHHHHHHhcCCcH
Confidence            4444432210  000111123344  5555555678888888887777766553 3444444  3577888888888555


Q ss_pred             HHHHHhHH---HHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcc-ccccchhcchhhhhhhH
Q 012448          226 TLETLSIL---ELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLS-KDDSHMFIDESSAKTVI  301 (463)
Q Consensus       226 vLv~lnal---ell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~-f~~~~~~~~~~~~k~~p  301 (463)
                      ..-++.-.   |.|.|+..+|.+.+|-.   .+.-++.-+  .+.+|+++.-|+.-.-...+ +|..       ....++
T Consensus       223 eVr~~~~t~l~~fL~eI~s~P~s~d~~~---~i~vlv~~l--~ss~~~iq~~al~Wi~efV~i~g~~-------~l~~~s  290 (675)
T KOG0212|consen  223 EVRTLTDTLLSEFLAEIRSSPSSMDYDD---MINVLVPHL--QSSEPEIQLKALTWIQEFVKIPGRD-------LLLYLS  290 (675)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccccCccc---chhhccccc--cCCcHHHHHHHHHHHHHHhcCCCcc-------hhhhhh
Confidence            55545555   88999999888874422   112222211  23778766545332222221 1111       122244


Q ss_pred             HHHHHHhccccCCCh-hhhhHHHHHHHhhc---CCHHHHHHHhhcCchhHHHHHHHHHhhccc---hhhHhHHhhhHHHh
Q 012448          302 SAIDGRLGFLQSQDS-DECESALEALGQIG---SSIQGATLLLLCLPPAARHVIDAAFDRQGH---GKQLAALHGLANIA  374 (463)
Q Consensus       302 ~~l~~~f~~~~~~d~-~~~~~A~dtlG~Ig---ss~eGk~~L~~~~~~~~~~~l~~~~~~~~~---~~k~r~L~al~~Il  374 (463)
                      ..+..++.++.+++. +++.+|...-|.+-   ++..+++-+.      ++.+++...++.++   ..|+.+|+-+..++
T Consensus       291 ~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id------~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~  364 (675)
T KOG0212|consen  291 GILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEID------YGSIIEVLTKYLSDDREETRIAVLNWIILLY  364 (675)
T ss_pred             hhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccc------hHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            555556666777766 78888888766544   4555554433      34555555555554   44999999999988


Q ss_pred             cCC
Q 012448          375 GKT  377 (463)
Q Consensus       375 ~~~  377 (463)
                      .-.
T Consensus       365 ~~~  367 (675)
T KOG0212|consen  365 HKA  367 (675)
T ss_pred             hhC
Confidence            865

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.56  E-value=0.49  Score=52.79  Aligned_cols=196  Identities=14%  Similarity=0.151  Sum_probs=124.9

Q ss_pred             cCChHHHHHccccCCCCc--chH---HHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCc
Q 012448           38 RFPLSVILNTLQTKPDVP--GLE---DTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSD  112 (463)
Q Consensus        38 ~~~l~~L~~~L~~~~~~~--~~~---~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~  112 (463)
                      .+.+|.|++.|..+++..  .-+   +.+-.||.-. .+.-++.+.+.+.+|+..-++.||=.=|+++.-++|.+++-.+
T Consensus       318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~-A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~  396 (859)
T KOG1241|consen  318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLF-AQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPE  396 (859)
T ss_pred             hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHH-HHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCc
Confidence            356899999998765222  112   3333355533 3446778888999999999999999999999999999997652


Q ss_pred             hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc--cccccCCCcchhhHhhHhhcCCchhHHHHH
Q 012448          113 LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI--DIIFPADNKAATDLGNLVAQCSSLGRVRVL  190 (463)
Q Consensus       113 ~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l--~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~  190 (463)
                      . .. +..++  ++.+|.++..+.|+...|...+.-.|.+|+++-+..  ........++  -|.+-+ +....+--.+|
T Consensus       397 ~-~~-Lt~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~--~l~~gL-~DePrva~N~C  469 (859)
T KOG1241|consen  397 P-DK-LTPIV--IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLS--ALLEGL-NDEPRVASNVC  469 (859)
T ss_pred             h-hh-hhHHH--hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHH--HHHHHh-hhCchHHHHHH
Confidence            1 22 33333  368999999999999999999999999999998722  1112222222  222111 22333444455


Q ss_pred             HHHHHHHhcCHHHHHHH----HhhccHHHHHhhcCC------CCcHHHHHhHHHHHHHHHh
Q 012448          191 SLIVKLFSVSRSVASVI----FKANLLTLLEEGVSK------KNDTLETLSILELLYELAE  241 (463)
Q Consensus       191 el~v~ia~~S~~~~~~v----~~sgl~~~ll~eL~~------~~DvLv~lnalell~eLa~  241 (463)
                      =.+..++.+=.++.-.-    .-..+|+.+++.|-.      .++-=+|..+-|-|.||.+
T Consensus       470 WAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk  530 (859)
T KOG1241|consen  470 WAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIK  530 (859)
T ss_pred             HHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            55555554333222111    001356666655322      1456678888898988888

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.04  Score=59.27  Aligned_cols=225  Identities=17%  Similarity=0.142  Sum_probs=150.1

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhc--cccccc-hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHH
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFK--TKYGAS-LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS  116 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~--~~~~~~-l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~  116 (463)
                      .++-||+-|.+++  ++.+..+..+|...+.  ...|.. -..+..+.++.-+.+|++-.+.-|+.-+...+.-.++   
T Consensus       209 ~ldGLf~~LsD~s--~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~---  283 (675)
T KOG0212|consen  209 LLDGLFNMLSDSS--DEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR---  283 (675)
T ss_pred             HHHHHHHHhcCCc--HHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc---
Confidence            3788899998876  5555554444444443  345555 3566789999999999999999999888888775522   


Q ss_pred             HHHHHhhccCcHHHHHHhhcCCchH----HHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHH
Q 012448          117 CALQLLIDYEIYPLLLDCLINGNEE----VATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSL  192 (463)
Q Consensus       117 ~~~~~~~~~~l~~~li~~l~d~d~~----va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el  192 (463)
                        .-++.-++++..++-|+.+.+..    +|..--..|.++.....+.+.+=-...++  .|.+.+.+.+..-|.-+++-
T Consensus       284 --~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~--vl~~~l~~~~~~tri~~L~W  359 (675)
T KOG0212|consen  284 --DLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIE--VLTKYLSDDREETRIAVLNW  359 (675)
T ss_pred             --chhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHH--HHHHHhhcchHHHHHHHHHH
Confidence              11333457888889999999985    33333333555544443332211123344  56667778888999999999


Q ss_pred             HHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccch-hh
Q 012448          193 IVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATET-IL  271 (463)
Q Consensus       193 ~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dp-l~  271 (463)
                      +..+...-+-- =.|....+|+-++.-|.| .+-.|-+-+++++..+|+++....|      ++.+.+.+.--.+|+ +.
T Consensus       360 i~~l~~~~p~q-l~~h~~~if~tLL~tLsd-~sd~vvl~~L~lla~i~~s~~~~~~------~~fl~sLL~~f~e~~~~l  431 (675)
T KOG0212|consen  360 IILLYHKAPGQ-LLVHNDSIFLTLLKTLSD-RSDEVVLLALSLLASICSSSNSPNL------RKFLLSLLEMFKEDTKLL  431 (675)
T ss_pred             HHHHHhhCcch-hhhhccHHHHHHHHhhcC-chhHHHHHHHHHHHHHhcCcccccH------HHHHHHHHHHHhhhhHHH
Confidence            99887665433 245667899999999999 5445567789999999996554433      555555555444455 35


Q ss_pred             hhhhhhHhhh
Q 012448          272 RSRAIMISGR  281 (463)
Q Consensus       272 r~~aili~g~  281 (463)
                      +.||-+|..-
T Consensus       432 ~~Rg~lIIRq  441 (675)
T KOG0212|consen  432 EVRGNLIIRQ  441 (675)
T ss_pred             HhhhhHHHHH
Confidence            6667666443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.45  E-value=0.0045  Score=46.04  Aligned_cols=55  Identities=27%  Similarity=0.281  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHH
Q 012448           94 HSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKL  153 (463)
Q Consensus        94 ~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~l  153 (463)
                      |.||+.+++.+|++.++.   .. ..+. .-+++++.++.++.|++..|...|..+|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~---~~-~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGC---PE-LLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTT---HH-HHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhccc---HH-HHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            679999999999987766   44 4444 3347999999999999999999999998754

...

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=0.19  Score=55.20  Aligned_cols=308  Identities=14%  Similarity=0.110  Sum_probs=174.0

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhc-----------cccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFK-----------TKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLL  108 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~-----------~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~  108 (463)
                      -||.|..+|.+.+  -..-|-+-..|.|+..           ++....+    .+-+..=.+||+|.+|..|+..+...+
T Consensus       129 lLp~L~~~L~s~d--~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~m----ipkfl~f~~h~spkiRs~A~~cvNq~i  202 (885)
T KOG2023|consen  129 LLPQLCELLDSPD--YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIM----IPKFLQFFKHPSPKIRSHAVGCVNQFI  202 (885)
T ss_pred             HHHHHHHHhcCCc--ccccchhHHHHHHHHhhhHHHHhhhcccCchHHh----HHHHHHHHhCCChhHHHHHHhhhhhee
Confidence            3789999998865  1222333334555432           2222223    444455568999999999999988876


Q ss_pred             hCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcccccc--CCCcchhhHhhHhhcCCchhH
Q 012448          109 EDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFP--ADNKAATDLGNLVAQCSSLGR  186 (463)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~--~~~~~~~~L~~~~~~~~~~vR  186 (463)
                      -...  .. +. .-.| ..+..+...-.|++.+|.+..-.+|.-+....+  +.+.+  .+.++  ++-......|+.|-
T Consensus       203 ~~~~--qa-l~-~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~--dkl~phl~~Ive--yML~~tqd~dE~VA  273 (885)
T KOG2023|consen  203 IIQT--QA-LY-VHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRP--DKLVPHLDNIVE--YMLQRTQDVDENVA  273 (885)
T ss_pred             ecCc--HH-HH-HHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH--HhcccchHHHHH--HHHHHccCcchhHH
Confidence            5441  11 11 1112 244444455589999999999999988876654  11111  12333  44445567899999


Q ss_pred             HHHHHHHHHHHhcC--HH-HHHHHHhhccHHHHHhhcCCC-CcHHHHHhHHH----------HHHH--------------
Q 012448          187 VRVLSLIVKLFSVS--RS-VASVIFKANLLTLLEEGVSKK-NDTLETLSILE----------LLYE--------------  238 (463)
Q Consensus       187 ~Rv~el~v~ia~~S--~~-~~~~v~~sgl~~~ll~eL~~~-~DvLv~lnale----------ll~e--------------  238 (463)
                      .-+||....+|..+  .+ +..++.  .++|.+++.+.-+ +|+.+-.|.-|          +=..              
T Consensus       274 LEACEFwla~aeqpi~~~~L~p~l~--kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~  351 (885)
T KOG2023|consen  274 LEACEFWLALAEQPICKEVLQPYLD--KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDAD  351 (885)
T ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHH--HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccc
Confidence            99999999999876  12 223333  4677777775543 45544443333          0000              


Q ss_pred             -------------------HHh-hHHHHH---HHHhcchHHHHHHHhcccc--cchhhhhhhhhHhhhhccccccchhcc
Q 012448          239 -------------------LAE-IQHSAE---FLSRTTLLQLLCSLIGNSA--TETILRSRAIMISGRLLSKDDSHMFID  293 (463)
Q Consensus       239 -------------------La~-t~~g~~---~L~~~gi~~~L~~~i~~~~--~dpl~r~~aili~g~i~~f~~~~~~~~  293 (463)
                                         |-+ +.....   -+....+++.+.-.+.+.-  ++=.+|--|+++.|-|+-  |-+.++ 
T Consensus       352 ~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE--GcM~g~-  428 (885)
T KOG2023|consen  352 DEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAE--GCMQGF-  428 (885)
T ss_pred             cccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHH--HHhhhc-
Confidence                               111 111111   1223345555555555422  333466666777777765  333221 


Q ss_pred             hhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC--CHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhH
Q 012448          294 ESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS--SIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLA  371 (463)
Q Consensus       294 ~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs--s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~  371 (463)
                         ..+.|..+-.+.+++.++-+-.+..+-|||+..|.  ..+..+-..   .+.+..++++..+.-+.. +-+|-.|++
T Consensus       429 ---~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f---~pvL~~ll~~llD~NK~V-QEAAcsAfA  501 (885)
T KOG2023|consen  429 ---VPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF---KPVLEGLLRRLLDSNKKV-QEAACSAFA  501 (885)
T ss_pred             ---ccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh---HHHHHHHHHHHhcccHHH-HHHHHHHHH
Confidence               12355555555567788999999999999999987  222322222   245666666655543322 445555555


Q ss_pred             HHh
Q 012448          372 NIA  374 (463)
Q Consensus       372 ~Il  374 (463)
                      .+-
T Consensus       502 tle  504 (885)
T KOG2023|consen  502 TLE  504 (885)
T ss_pred             HHH
Confidence            443

>TIGR02270 conserved hypothetical protein

Probab=96.33  E-value=0.26  Score=52.14  Aligned_cols=205  Identities=18%  Similarity=0.087  Sum_probs=124.1

Q ss_pred             hchHHHHHHhh-cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC
Q 012448           79 PHYMPFVQVGL-TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP  157 (463)
Q Consensus        79 ~~~~~~l~~gL-~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~  157 (463)
                      +...+.+...| ..+++.|+..++..+..   ..   ..         ..+..++.++.|++.+|...++++|..+.   
T Consensus        53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~---~~---~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~---  114 (410)
T TIGR02270        53 KAATELLVSALAEADEPGRVACAALALLA---QE---DA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG---  114 (410)
T ss_pred             HhHHHHHHHHHhhCCChhHHHHHHHHHhc---cC---Ch---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC---
Confidence            44577788888 57788888877666653   22   12         23677888999999999999999997653   


Q ss_pred             CCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHH
Q 012448          158 NGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLY  237 (463)
Q Consensus       158 ~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~  237 (463)
                             ++....  .|.+.+.+.+..+|.=+++.+..   +..+         -.+.++.-|++ .|..|+..++..+.
T Consensus       115 -------~~~a~~--~L~~~L~~~~p~vR~aal~al~~---r~~~---------~~~~L~~~L~d-~d~~Vra~A~raLG  172 (410)
T TIGR02270       115 -------GRQAEP--WLEPLLAASEPPGRAIGLAALGA---HRHD---------PGPALEAALTH-EDALVRAAALRALG  172 (410)
T ss_pred             -------chHHHH--HHHHHhcCCChHHHHHHHHHHHh---hccC---------hHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence                   233444  66667777788888766655554   2222         23455666778 99999999999998


Q ss_pred             HHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcccccc----chhc---chh--------h-hhhhH
Q 012448          238 ELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDS----HMFI---DES--------S-AKTVI  301 (463)
Q Consensus       238 eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~----~~~~---~~~--------~-~k~~p  301 (463)
                      .+...          .....|...+.  ..||-+|.-++-..+.+..- ..    ..|.   +.+        . ..+-|
T Consensus       173 ~l~~~----------~a~~~L~~al~--d~~~~VR~aA~~al~~lG~~-~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~  239 (410)
T TIGR02270       173 ELPRR----------LSESTLRLYLR--DSDPEVRFAALEAGLLAGSR-LAWGVCRRFQVLEGGPHRQRLLVLLAVAGGP  239 (410)
T ss_pred             hhccc----------cchHHHHHHHc--CCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHhccCccHHHHHHHHHHhCCch
Confidence            87652          22222433333  37777776666555555431 11    1110   111        0 00122


Q ss_pred             HHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHH
Q 012448          302 SAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATL  338 (463)
Q Consensus       302 ~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~  338 (463)
                      ..++.+-..+  +|+..+..+++++|.+|...----+
T Consensus       240 ~a~~~L~~ll--~d~~vr~~a~~AlG~lg~p~av~~L  274 (410)
T TIGR02270       240 DAQAWLRELL--QAAATRREALRAVGLVGDVEAAPWC  274 (410)
T ss_pred             hHHHHHHHHh--cChhhHHHHHHHHHHcCCcchHHHH
Confidence            2233222222  3345899999999999985443333

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.20  E-value=1.9  Score=48.62  Aligned_cols=139  Identities=16%  Similarity=0.167  Sum_probs=114.4

Q ss_pred             hccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC-Ccc--ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhc
Q 012448          123 IDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN-GID--IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSV  199 (463)
Q Consensus       123 ~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~-~l~--~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~  199 (463)
                      .+.+.+.+++..+-+.|-.|...|+..|+.+-++.| .++  +++.|-.++  .|...+...-+.+|=-+.-++..+.+-
T Consensus       119 k~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS--~lmdlL~DsrE~IRNe~iLlL~eL~k~  196 (970)
T KOG0946|consen  119 KNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGIS--KLMDLLRDSREPIRNEAILLLSELVKD  196 (970)
T ss_pred             cCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHH--HHHHHHhhhhhhhchhHHHHHHHHHcc
Confidence            445788899999999999999999999999988887 663  566778888  888888889999999999999999999


Q ss_pred             CHHHHHHHHhhccHHHHHhhcCCC--CcH-HHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhc
Q 012448          200 SRSVASVIFKANLLTLLEEGVSKK--NDT-LETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIG  263 (463)
Q Consensus       200 S~~~~~~v~~sgl~~~ll~eL~~~--~Dv-Lv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~  263 (463)
                      ++..-..|+=.++|..++.-+...  -|- +|-..|+-++--|-+ ....-+|.-..|-+++|..++.
T Consensus       197 n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~  264 (970)
T KOG0946|consen  197 NSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLS  264 (970)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcC
Confidence            999999998888998888776542  354 888999999999998 4444566667777777765553

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.99  E-value=1.1  Score=46.09  Aligned_cols=205  Identities=19%  Similarity=0.161  Sum_probs=138.7

Q ss_pred             cccchhhchHHHHHHhh--cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHH-hhcCCchHHHHHHHHH
Q 012448           73 YGASLIPHYMPFVQVGL--TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLD-CLINGNEEVATASMDA  149 (463)
Q Consensus        73 ~~~~l~~~~~~~l~~gL--~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~-~l~d~d~~va~~A~~~  149 (463)
                      .|..+.-+-+..++.-|  +..+..|-.+.+.-+.+..-..   .. ..|.+++.++++++.. ...++...+-+.+-.+
T Consensus       138 qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h---E~-nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a  213 (461)
T KOG4199|consen  138 QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH---EV-NRQLFMELKILELILQVLNREGKTRTVRELYDA  213 (461)
T ss_pred             CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh---HH-HHHHHHHhhHHHHHHHHHcccCccHHHHHHHHH
Confidence            44444444455555554  3456667777766666544333   34 6789999999999995 5556666688888877


Q ss_pred             HHHHhCCCCCccccccCCCcch---------hhHhhHh-hcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhh
Q 012448          150 IKKLAGFPNGIDIIFPADNKAA---------TDLGNLV-AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEG  219 (463)
Q Consensus       150 L~~lak~~~~l~~l~~~~~~~~---------~~L~~~~-~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~e  219 (463)
                      +.-+- .++.+.+.|..----+         +.|.+.+ .-.++-+-.-.+-.+..|| +..|.-..+.++|=++-++.+
T Consensus       214 ~r~l~-~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA-Vr~E~C~~I~e~GGl~tl~~~  291 (461)
T KOG4199|consen  214 IRALL-TDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA-VRDEICKSIAESGGLDTLLRC  291 (461)
T ss_pred             HHHhc-CCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH-HHHHHHHHHHHccCHHHHHHH
Confidence            76654 2334444443111000         1111111 1223444455555666666 567888899999999999999


Q ss_pred             cCCCCcHHHH---HhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhc
Q 012448          220 VSKKNDTLET---LSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLL  283 (463)
Q Consensus       220 L~~~~DvLv~---lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~  283 (463)
                      +++++|--.|   +.|+.+|+.||-+..-=.-|++.|+.++|+..+..-.+||.+--.+|.+..++-
T Consensus       292 i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~  358 (461)
T KOG4199|consen  292 IDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILC  358 (461)
T ss_pred             HhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            9997777666   679999999999988889999999999999999999999986555555555543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.97  E-value=0.49  Score=53.95  Aligned_cols=226  Identities=15%  Similarity=0.103  Sum_probs=125.1

Q ss_pred             hchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhH-HHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC
Q 012448           79 PHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEA-SCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP  157 (463)
Q Consensus        79 ~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~-~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~  157 (463)
                      ....+.+..=+.......|..++.++..++++...+- .++.+.     ++.-+...|.+.|..+++.|...|+-++..+
T Consensus       650 ~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-----vL~el~~Lisesdlhvt~~a~~~L~tl~~~~  724 (1233)
T KOG1824|consen  650 TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-----VLVELPPLISESDLHVTQLAVAFLTTLAIIQ  724 (1233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-----HHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            3445566666666677888889999999888763221 113332     2233345667999999999999999999888


Q ss_pred             CCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhcc-HHHHHhhcCC-----CCcHHHH--
Q 012448          158 NGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANL-LTLLEEGVSK-----KNDTLET--  229 (463)
Q Consensus       158 ~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl-~~~ll~eL~~-----~~DvLv~--  229 (463)
                      |....-....+++  .+-.++  +++.+.-.++...-..+-.=+-.    .+.++ +..++.++..     ..|-+-+  
T Consensus       725 ps~l~~~~~~iL~--~ii~ll--~Spllqg~al~~~l~~f~alV~t----~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa  796 (1233)
T KOG1824|consen  725 PSSLLKISNPILD--EIIRLL--RSPLLQGGALSALLLFFQALVIT----KEPDLDYISLLSLLTAPVYEQVTDGLHKQA  796 (1233)
T ss_pred             cHHHHHHhhhhHH--HHHHHh--hCccccchHHHHHHHHHHHHHhc----CCCCccHHHHHHHHcCCcccccccchhHHH
Confidence            7544334444554  333233  34444444443332221110000    01111 3334444332     0121111  


Q ss_pred             -HhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHH
Q 012448          230 -LSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGR  307 (463)
Q Consensus       230 -lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~  307 (463)
                       .+.+.|...|.. .++     ....+..++..-+..++.+.-.+-.++++.|.+.-  ..   ... -...||..+-  
T Consensus       797 ~~siA~cvA~Lt~~~~~-----~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr--~~---~~s-~~~e~~~~ii--  863 (1233)
T KOG1824|consen  797 YYSIAKCVAALTCACPQ-----KSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGR--RK---DLS-PQNELKDTII--  863 (1233)
T ss_pred             HHHHHHHHHHHHHhccc-----cchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhcc--CC---CCC-cchhhHHHHH--
Confidence             113333333333 221     23456777777777666444456677777777665  11   101 1233555443  


Q ss_pred             hccccCCChhhhhHHHHHHHhhcC
Q 012448          308 LGFLQSQDSDECESALEALGQIGS  331 (463)
Q Consensus       308 f~~~~~~d~~~~~~A~dtlG~Igs  331 (463)
                       +.+.++..+++.+|.-+||.++.
T Consensus       864 -eaf~sp~edvksAAs~ALGsl~v  886 (1233)
T KOG1824|consen  864 -EAFNSPSEDVKSAASYALGSLAV  886 (1233)
T ss_pred             -HHcCCChHHHHHHHHHHhhhhhc
Confidence             45678999999999999999987

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=95.95  E-value=0.023  Score=45.71  Aligned_cols=80  Identities=19%  Similarity=0.226  Sum_probs=59.1

Q ss_pred             HHHHHhh-cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448           83 PFVQVGL-TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID  161 (463)
Q Consensus        83 ~~l~~gL-~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~  161 (463)
                      ++|...| +++++.||..+++.++++   .   ..         .+++.++..+.|++..|...|+.+|.+++       
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~---~---~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------   59 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGEL---G---DP---------EAIPALIELLKDEDPMVRRAAARALGRIG-------   59 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCC---T---HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHc---C---CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------
Confidence            5677777 999999999999999953   2   22         45888889999999999999999999885       


Q ss_pred             ccccCCCcchhhHhhHhhcCCc-hhHHHH
Q 012448          162 IIFPADNKAATDLGNLVAQCSS-LGRVRV  189 (463)
Q Consensus       162 ~l~~~~~~~~~~L~~~~~~~~~-~vR~Rv  189 (463)
                         ++..++  .|.+.+.+.++ .+|.-+
T Consensus        60 ---~~~~~~--~L~~~l~~~~~~~vr~~a   83 (88)
T PF13646_consen   60 ---DPEAIP--ALIKLLQDDDDEVVREAA   83 (88)
T ss_dssp             ---HHHTHH--HHHHHHTC-SSHHHHHHH
T ss_pred             ---CHHHHH--HHHHHHcCCCcHHHHHHH
Confidence               234555  67755555444 345433

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.92  E-value=0.26  Score=54.88  Aligned_cols=265  Identities=8%  Similarity=0.029  Sum_probs=158.9

Q ss_pred             HHHHccccC--CCCcchHHHHHHHHHHHhccccc--cchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448           43 VILNTLQTK--PDVPGLEDTLVVCLERIFKTKYG--ASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA  118 (463)
Q Consensus        43 ~L~~~L~~~--~~~~~~~~~~~~vL~~il~~~~~--~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~  118 (463)
                      .|+.|+...  ++.+..+--.+.+|..++.+..|  -+....+...|-.|....--.+=..-++++|+++--.   +. -
T Consensus       553 ~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplm---d~-e  628 (1172)
T KOG0213|consen  553 PLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLM---DA-E  628 (1172)
T ss_pred             HHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccc---cH-H
Confidence            455555543  22244555555688888766655  3555667888888888887777788899999987543   22 1


Q ss_pred             HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc-ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448          119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID-IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF  197 (463)
Q Consensus       119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~-~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia  197 (463)
                      ..-.-..+++.-++...+.||.+.+++..+++++.+... |.+ .-...+.++ -.+. ..-..-.-.-+|-|--+|...
T Consensus       629 ya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~-Gv~~~y~r~dilp-~ff~-~fw~rrmA~drr~ykqlv~tt  705 (1172)
T KOG0213|consen  629 YASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATD-GVEPAYIRFDILP-EFFF-SFWGRRMALDRRNYKQLVDTT  705 (1172)
T ss_pred             HHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhccc-CCCHHHHhhhhhH-HHHh-hhhhhhhhccccchhhHHHHH
Confidence            112222356677788999999999999999999998654 542 111222222 1121 111111122233343333332


Q ss_pred             hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh--hHHHHHHHHhcchHHHHHHHhcccc-cchhhhhh
Q 012448          198 SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE--IQHSAEFLSRTTLLQLLCSLIGNSA-TETILRSR  274 (463)
Q Consensus       198 ~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~--t~~g~~~L~~~gi~~~L~~~i~~~~-~dpl~r~~  274 (463)
                         .+.++.+=.+.+++.++.++++ +-.-.|.-++|.+..+..  ...+..-=.....++.|+.-++..+ +|.     
T Consensus       706 ---v~ia~KvG~~~~v~R~v~~lkd-e~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-----  776 (1172)
T KOG0213|consen  706 ---VEIAAKVGSDPIVSRVVLDLKD-EPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-----  776 (1172)
T ss_pred             ---HHHHHHhCchHHHHHHhhhhcc-ccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-----
Confidence               3344455556788999999999 888888888888877765  2222221222334455544444433 444     


Q ss_pred             hhhHhhhhc---cccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448          275 AIMISGRLL---SKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS  331 (463)
Q Consensus       275 aili~g~i~---~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs  331 (463)
                       +|.-||-.   .+|+-       +-+..|+.+..++..+....+..+.-|+|++|.|+.
T Consensus       777 -vml~gfg~V~~~lg~r-------~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~  828 (1172)
T KOG0213|consen  777 -VMLLGFGTVVNALGGR-------VKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAK  828 (1172)
T ss_pred             -hhhhhHHHHHHHHhhc-------cccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence             23333311   12221       223456667777777888999999999999999885

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.66  E-value=0.034  Score=46.98  Aligned_cols=75  Identities=17%  Similarity=0.248  Sum_probs=58.6

Q ss_pred             cchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 012448           75 ASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLA  154 (463)
Q Consensus        75 ~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~la  154 (463)
                      ....+.+.+.+..|++.++++||-.+|.++..+++..   ......  .=++++..+...+.|+|.+|...| ..|.++-
T Consensus        22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~--~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILP--YFNEIFDALCKLSADPDENVRSAA-ELLDRLL   95 (97)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence            3455567899999999999999999999999998865   220222  224699999999999999998865 7777665


Q ss_pred             C
Q 012448          155 G  155 (463)
Q Consensus       155 k  155 (463)
                      |
T Consensus        96 k   96 (97)
T PF12755_consen   96 K   96 (97)
T ss_pred             c
Confidence            4

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.65  E-value=1.3  Score=52.94  Aligned_cols=119  Identities=17%  Similarity=0.267  Sum_probs=85.2

Q ss_pred             HHHHhcCC--hHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhC
Q 012448           33 KKFLDRFP--LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLED  110 (463)
Q Consensus        33 ~~~~~~~~--l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~  110 (463)
                      +.|..+|+  |..|+..|.+..  ...+..+--||..+-.+-...-..+.+...+..=+...+..||+.|+.-+||-+-.
T Consensus       808 r~f~~sfD~yLk~Il~~l~e~~--ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~  885 (1692)
T KOG1020|consen  808 RSFSQSFDPYLKLILSVLGENA--IALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS  885 (1692)
T ss_pred             hHHHHhhHHHHHHHHHHhcCch--HHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc
Confidence            44444443  567777887544  55565655577776433322234566788888889999999999999999986643


Q ss_pred             CchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccc
Q 012448          111 SDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDI  162 (463)
Q Consensus       111 ~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~  162 (463)
                      .   .. ..     ...|..|+..+.|+-++|.+-|++++.+|+...|-...
T Consensus       886 ~---~e-~~-----~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~  928 (1692)
T KOG1020|consen  886 I---PE-LI-----FQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK  928 (1692)
T ss_pred             c---HH-HH-----HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh
Confidence            3   11 11     14688899999999999999999999999988875543

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.64  E-value=0.18  Score=56.77  Aligned_cols=119  Identities=21%  Similarity=0.199  Sum_probs=53.4

Q ss_pred             cchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHh
Q 012448           55 PGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDC  134 (463)
Q Consensus        55 ~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~  134 (463)
                      .++++.+=..|.++  ++.-+...--....++.-|+||||-+|..|++.++.+  +.   .+ +..     .+++.|..|
T Consensus        69 ~ElKrL~ylYl~~y--ak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l--~~---~e-l~~-----~~~~~ik~~  135 (757)
T COG5096          69 VELKRLLYLYLERY--AKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL--RV---KE-LLG-----NIIDPIKKL  135 (757)
T ss_pred             HHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc--Ch---HH-HHH-----HHHHHHHHH
Confidence            34444444455544  2211222212345555555555555555555555553  11   11 111     244455555


Q ss_pred             hcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHH
Q 012448          135 LINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVL  190 (463)
Q Consensus       135 l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~  190 (463)
                      +.|+...|-+.|+-++.++-+-.+  +-+-+.+...  .++.++...|++|..-++
T Consensus       136 l~d~~ayVRk~Aalav~kly~ld~--~l~~~~g~~~--~l~~l~~D~dP~Vi~nAl  187 (757)
T COG5096         136 LTDPHAYVRKTAALAVAKLYRLDK--DLYHELGLID--ILKELVADSDPIVIANAL  187 (757)
T ss_pred             ccCCcHHHHHHHHHHHHHHHhcCH--hhhhcccHHH--HHHHHhhCCCchHHHHHH
Confidence            555555555555555555544432  1122222443  444444455555554433

>TIGR02270 conserved hypothetical protein

Probab=95.57  E-value=0.64  Score=49.26  Aligned_cols=199  Identities=13%  Similarity=0.011  Sum_probs=129.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448           82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID  161 (463)
Q Consensus        82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~  161 (463)
                      .+.|..+|..+++.||.-++++++.+  ..             ....+.|+..+.+++..|...++.++.....      
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i--~~-------------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------  146 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWL--GG-------------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------  146 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcC--Cc-------------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------
Confidence            78889999999999999999999984  11             1456677788899999999988887776321      


Q ss_pred             ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448          162 IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE  241 (463)
Q Consensus       162 ~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~  241 (463)
                           +..+  .|.+.+.+.|..||.+++..+..+...           ...+.+..-+.+ .|.-||-.+++-+..+..
T Consensus       147 -----~~~~--~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d-~~~~VR~aA~~al~~lG~  207 (410)
T TIGR02270       147 -----DPGP--ALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRD-SDPEVRFAALEAGLLAGS  207 (410)
T ss_pred             -----ChHH--HHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcC-CCHHHHHHHHHHHHHcCC
Confidence                 1223  566678899999999999999887643           234445556888 999999999988877744


Q ss_pred             hHHHHHHH----HhcchHH--------------HHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHH
Q 012448          242 IQHSAEFL----SRTTLLQ--------------LLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISA  303 (463)
Q Consensus       242 t~~g~~~L----~~~gi~~--------------~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~  303 (463)
                       ++...-+    ...|...              ...+.+.....||.+|--++...|++.-            .+..|..
T Consensus       208 -~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~vr~~a~~AlG~lg~------------p~av~~L  274 (410)
T TIGR02270       208 -RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAATRREALRAVGLVGD------------VEAAPWC  274 (410)
T ss_pred             -HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChhhHHHHHHHHHHcCC------------cchHHHH
Confidence             3333222    2223222              1222222222444445444455555443            1334555


Q ss_pred             HHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHH
Q 012448          304 IDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLL  339 (463)
Q Consensus       304 l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L  339 (463)
                      ++.+      .|+...-.|-+++..|-- -.++..+.
T Consensus       275 ~~~l------~d~~~aR~A~eA~~~ItG~~l~~~~l~  305 (410)
T TIGR02270       275 LEAM------REPPWARLAGEAFSLITGMDVALEELA  305 (410)
T ss_pred             HHHh------cCcHHHHHHHHHHHHhhCCCcchhhhc
Confidence            5532      355588899999988754 45555443

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.48  E-value=0.025  Score=37.27  Aligned_cols=29  Identities=21%  Similarity=0.315  Sum_probs=25.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHhC
Q 012448           82 MPFVQVGLTADSHSVKRLACKTVTCLLED  110 (463)
Q Consensus        82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~  110 (463)
                      .+.+..++++|++.||..+++.++.+.++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            57889999999999999999999998875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=95.48  E-value=1.2  Score=50.02  Aligned_cols=305  Identities=16%  Similarity=0.182  Sum_probs=184.8

Q ss_pred             HhcCChHHHHHccccCCCCcchHHHHHHHHHHH-hccccccchhhch--HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCc
Q 012448           36 LDRFPLSVILNTLQTKPDVPGLEDTLVVCLERI-FKTKYGASLIPHY--MPFVQVGLTADSHSVKRLACKTVTCLLEDSD  112 (463)
Q Consensus        36 ~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~i-l~~~~~~~l~~~~--~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~  112 (463)
                      -....||.-+.-|.+++  +.+.-.+++.|..+ |+.-..-.-..++  ...|+.-|.|+++.|..-+|+++.+++-...
T Consensus       230 w~d~~lpe~i~mL~~q~--~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~  307 (717)
T KOG1048|consen  230 WRDPTLPEVISMLMSQD--PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKS  307 (717)
T ss_pred             ccccccHHHHHHHhccC--hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccC
Confidence            35667899999999877  66666666666654 3322222233333  7889999999999999999999999996553


Q ss_pred             hhHHHHHHHhhccCcHHHHHHhhcC-CchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh------------
Q 012448          113 LEASCALQLLIDYEIYPLLLDCLIN-GNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA------------  179 (463)
Q Consensus       113 ~~~~~~~~~~~~~~l~~~li~~l~d-~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~------------  179 (463)
                      +.+. - -.+.+.+=++.++..+.. .|.+|.+....+|.+|+.+ +.+....-.+.+.  .|.+.+-            
T Consensus       308 ~~~N-K-lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~al~--tLt~~vI~P~Sgw~~~~~~  382 (717)
T KOG1048|consen  308 TDSN-K-LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSALS--TLTDNVIIPHSGWEEEPAP  382 (717)
T ss_pred             Cccc-c-hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHHHH--HHHHhhcccccccCCCCcc
Confidence            3111 2 245556667788877775 6788999999999999887 3332111111222  2221111            


Q ss_pred             --cCCchhHHHHHHHHHHHHhcCHHHHHHHHh-hccHHHHHhhcC------CCCcHHHHHhHHHHHHHHHhh-----HHH
Q 012448          180 --QCSSLGRVRVLSLIVKLFSVSRSVASVIFK-ANLLTLLEEGVS------KKNDTLETLSILELLYELAEI-----QHS  245 (463)
Q Consensus       180 --~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~-sgl~~~ll~eL~------~~~DvLv~lnalell~eLa~t-----~~g  245 (463)
                        ..+..+-+++--|+=++++.+.+.-+...+ .|+++.|+.-+.      +.||--| =||+.+++.|.--     +..
T Consensus       383 ~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~V-ENcvCilRNLSYrl~~Evp~~  461 (717)
T KOG1048|consen  383 RKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSV-ENCVCILRNLSYRLEAEVPPK  461 (717)
T ss_pred             cccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhH-HHHHHHHhhcCchhhhhcCHh
Confidence              124667788888999999988888776543 577777776543      2144444 4899999877542     222


Q ss_pred             HH-------------------------------------------------HHHhcchHHHHHHHhcccccchhhhhhhh
Q 012448          246 AE-------------------------------------------------FLSRTTLLQLLCSLIGNSATETILRSRAI  276 (463)
Q Consensus       246 ~~-------------------------------------------------~L~~~gi~~~L~~~i~~~~~dpl~r~~ai  276 (463)
                      +.                                                 ||.+..+++-=..++..+.++-.+  -+.
T Consensus       462 ~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~Tl--Eas  539 (717)
T KOG1048|consen  462 YRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTL--EAS  539 (717)
T ss_pred             hhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHH--HHh
Confidence            22                                                 222222222212222211111000  000


Q ss_pred             hHhhhh---ccccccc-hhcch---hhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHH
Q 012448          277 MISGRL---LSKDDSH-MFIDE---SSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARH  349 (463)
Q Consensus       277 li~g~i---~~f~~~~-~~~~~---~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~  349 (463)
                        .|-+   .++...+ .++-+   +-+|+.|++++    +++.+|+....++.-.|+++..-..-|..+-+.   ++++
T Consensus       540 --aGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~----ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~---a~~~  610 (717)
T KOG1048|consen  540 --AGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVE----LLRNDDSDVVRSAAGALRNLSRDIRNKELIGKY---AIPD  610 (717)
T ss_pred             --hhhHhhhhccCCcchhHHHhhhhhhccCccHHHH----HHhcCCchHHHHHHHHHhhhccCchhhhhhhcc---hHHH
Confidence              0000   0000000 00000   13677777555    678999999999999999999999999988854   8888


Q ss_pred             HHHHHHhhcc
Q 012448          350 VIDAAFDRQG  359 (463)
Q Consensus       350 ~l~~~~~~~~  359 (463)
                      ++...=....
T Consensus       611 lv~~Lp~~~~  620 (717)
T KOG1048|consen  611 LVRCLPGSGP  620 (717)
T ss_pred             HHHhCcCCCC
Confidence            8887665555

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=95.34  E-value=2.5  Score=44.77  Aligned_cols=78  Identities=17%  Similarity=0.091  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHhhc-cHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhccc
Q 012448          187 VRVLSLIVKLFSVSRSVASVIFKAN-LLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNS  265 (463)
Q Consensus       187 ~Rv~el~v~ia~~S~~~~~~v~~sg-l~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~  265 (463)
                      -|++|+.|-+. .-.|++++..+.| +|+.++..+++ +|.-++....=-+..+|.+...+.|++++|++.+|.+.+...
T Consensus       291 k~~~el~vlll-tGDeSMq~L~~~p~~l~~~~sw~~S-~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~  368 (604)
T KOG4500|consen  291 KRIAELDVLLL-TGDESMQKLHADPQFLDFLESWFRS-DDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQE  368 (604)
T ss_pred             HhhhhHhhhhh-cCchHHHHHhcCcHHHHHHHHHhcC-CchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Confidence            46777777666 4577788888888 99999999999 999888888888999999999999999999999999999763


Q ss_pred             c
Q 012448          266 A  266 (463)
Q Consensus       266 ~  266 (463)
                      .
T Consensus       369 ~  369 (604)
T KOG4500|consen  369 K  369 (604)
T ss_pred             c
Confidence            3

>PF05536 Neurochondrin: Neurochondrin

Probab=95.32  E-value=0.8  Score=50.29  Aligned_cols=65  Identities=25%  Similarity=0.239  Sum_probs=55.3

Q ss_pred             CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcc
Q 012448          200 SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGN  264 (463)
Q Consensus       200 S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~  264 (463)
                      .++++..-.=-+-+|.+++.+.+.+|.-+.--|+++|.-++.++.|.+.+.+.|.+..|++.+.+
T Consensus        87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~  151 (543)
T PF05536_consen   87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN  151 (543)
T ss_pred             ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh
Confidence            67666443334788999999988566588889999999999999999999999999999999876

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.25  E-value=1.3  Score=50.72  Aligned_cols=268  Identities=14%  Similarity=0.110  Sum_probs=162.9

Q ss_pred             HHHHccccCCCCcchHHHHHH-HHHHHhcccc--ccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448           43 VILNTLQTKPDVPGLEDTLVV-CLERIFKTKY--GASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL  119 (463)
Q Consensus        43 ~L~~~L~~~~~~~~~~~~~~~-vL~~il~~~~--~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~  119 (463)
                      .|..-..+.+  +.++=.++. .+..+-+..-  -.+..+++...+.+.|+..++.|..+|.+.+|=++.+... .  -.
T Consensus         9 ~LlekmtssD--KDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke-~--~l   83 (1233)
T KOG1824|consen    9 NLLEKMTSSD--KDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKE-D--QL   83 (1233)
T ss_pred             HHHHHccCCC--cchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchH-H--HH
Confidence            4455555444  555544444 6666532211  1356778999999999999999999999999988866522 1  22


Q ss_pred             HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhc------CCchhHHHHHHHH
Q 012448          120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQ------CSSLGRVRVLSLI  193 (463)
Q Consensus       120 ~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~------~~~~vR~Rv~el~  193 (463)
                      +.+++. +.+   +.+.+.+..=-..++....-++.-+|....-+.++++.  .+.+.+.+      ..+-+||-+++++
T Consensus        84 e~~ve~-L~~---~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~--~~t~~l~~~i~~qe~~sai~~e~lDil  157 (1233)
T KOG1824|consen   84 ETIVEN-LCS---NMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCK--RITPKLKQAISKQEDVSAIKCEVLDIL  157 (1233)
T ss_pred             HHHHHH-Hhh---hhccchhhhccHHHHHHHHHHhcCCCccccccccHHHH--HHHHHHHHHhhhcccchhhHHHHHHHH
Confidence            333331 111   23344443333445555555666666333333444443  22223222      2444999999999


Q ss_pred             HHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhh
Q 012448          194 VKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRS  273 (463)
Q Consensus       194 v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~  273 (463)
                      ...-+.=-+.+-- ...+++.-++--+.. .=..+|+-++..|..|+.+-.+--|   .++++.|.+.+.+.....-+|+
T Consensus       158 ~d~lsr~g~ll~~-fh~~il~~l~~ql~s-~R~aVrKkai~~l~~la~~~~~~ly---~~li~~Ll~~L~~~~q~~~~rt  232 (1233)
T KOG1824|consen  158 ADVLSRFGTLLPN-FHLSILKCLLPQLQS-PRLAVRKKAITALGHLASSCNRDLY---VELIEHLLKGLSNRTQMSATRT  232 (1233)
T ss_pred             HHHHHhhcccCcc-hHHHHHHHHhhcccC-hHHHHHHHHHHHHHHHHHhcCHHHH---HHHHHHHHhccCCCCchHHHHH
Confidence            8876554443333 334677777777888 9999999999999999994333222   2356677777777666566776


Q ss_pred             hhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhc
Q 012448          274 RAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIG  330 (463)
Q Consensus       274 ~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Ig  330 (463)
                      ...++.......|.-+  - ....+..|...+.+ +.+++.|+..++..+.+++.+=
T Consensus       233 ~Iq~l~~i~r~ag~r~--~-~h~~~ivp~v~~y~-~~~e~~dDELrE~~lQale~fl  285 (1233)
T KOG1824|consen  233 YIQCLAAICRQAGHRF--G-SHLDKIVPLVADYC-NKIEEDDDELREYCLQALESFL  285 (1233)
T ss_pred             HHHHHHHHHHHhcchh--h-cccchhhHHHHHHh-cccccCcHHHHHHHHHHHHHHH
Confidence            6667666655543322  0 11334455555533 4568888999999999998654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=95.25  E-value=5.8  Score=43.91  Aligned_cols=166  Identities=14%  Similarity=0.122  Sum_probs=119.1

Q ss_pred             ChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchh-----hchHHHHHHhhcCCCHHHHHHHHH
Q 012448           28 NDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLI-----PHYMPFVQVGLTADSHSVKRLACK  102 (463)
Q Consensus        28 s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~-----~~~~~~l~~gL~h~~~~Vr~Lal~  102 (463)
                      .++-..+++++..++.||..|.+.+ .-+.++....|++.+|++.+-+...     .++...+..-+.|+...+-++-+.
T Consensus        84 eqd~v~svL~~~~ll~Ll~LLs~sD-~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~  162 (678)
T KOG1293|consen   84 EQDKVDSVLRIIELLKLLQLLSESD-SLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVS  162 (678)
T ss_pred             ccchHHHHHHHhhHHHHHHHhcCcc-hHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence            6778899999999999999998865 3356777777999999887544322     223444444455677777777655


Q ss_pred             HHHHHHhCCchhHHHHHH-HhhccCcHHHHHHhhcCCchHHHHHHHHHHH---HHhCCCCC--c---cccccCCCcchhh
Q 012448          103 TVTCLLEDSDLEASCALQ-LLIDYEIYPLLLDCLINGNEEVATASMDAIK---KLAGFPNG--I---DIIFPADNKAATD  173 (463)
Q Consensus       103 ~l~~i~~~~~~~~~~~~~-~~~~~~l~~~li~~l~d~d~~va~~A~~~L~---~lak~~~~--l---~~l~~~~~~~~~~  173 (463)
                      -...+-...      ..| ++-++++..-+-.|+.--...+..+|...++   ++..+++.  +   ..+.+.++...-.
T Consensus       163 ~~a~~s~~~------~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~  236 (678)
T KOG1293|consen  163 RAAHLSSTK------DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCV  236 (678)
T ss_pred             hhccccccc------hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhh
Confidence            444432222      233 5678889999989999989999999999999   78777762  2   1334555543113


Q ss_pred             HhhHhhcCCchhHHHHHHHHHHHHhcC
Q 012448          174 LGNLVAQCSSLGRVRVLSLIVKLFSVS  200 (463)
Q Consensus       174 L~~~~~~~~~~vR~Rv~el~v~ia~~S  200 (463)
                      ..++..+.+..-|.|.+++++.+...|
T Consensus       237 v~rL~k~~~~s~~l~sl~cl~~~~~~s  263 (678)
T KOG1293|consen  237 VTRLLKDPDFSERLRSLECLVPYLRKS  263 (678)
T ss_pred             hhhhhhCCCccHHHHHHHHHHHHHhcc
Confidence            445677889999999999999999988

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=95.20  E-value=1.2  Score=51.50  Aligned_cols=220  Identities=15%  Similarity=0.137  Sum_probs=136.7

Q ss_pred             ChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccc---cchhhchHHHH
Q 012448            9 DSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG---ASLIPHYMPFV   85 (463)
Q Consensus         9 ~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~---~~l~~~~~~~l   85 (463)
                      |..-=|-||+-++.--+..+-+.|.+++...     .++++..+ .+...-.+|.+|..+  ++.|   .+..+.+.+.+
T Consensus       354 dt~VrWSaAKg~grvt~rlp~~Lad~vi~sv-----id~~~p~e-~~~aWHgacLaLAEL--A~rGlLlps~l~dVvplI  425 (1133)
T KOG1943|consen  354 DTVVRWSAAKGLGRVTSRLPPELADQVIGSV-----IDLFNPAE-DDSAWHGACLALAEL--ALRGLLLPSLLEDVVPLI  425 (1133)
T ss_pred             cchhhHHHHHHHHHHHccCcHHHHHHHHHHH-----HHhcCcCC-chhHHHHHHHHHHHH--HhcCCcchHHHHHHHHHH
Confidence            3444466676666555556667777766543     33555443 234466788888888  6555   45666788999


Q ss_pred             HHhhcCC--------CHHHHHHHH---HHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHH-
Q 012448           86 QVGLTAD--------SHSVKRLAC---KTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKL-  153 (463)
Q Consensus        86 ~~gL~h~--------~~~Vr~Lal---~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~l-  153 (463)
                      ..||.=.        -..||..||   |+++|.-+++      -..-+.+.-+-.+++..+-|+|..+-++|..++.+. 
T Consensus       426 ~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~------~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~V  499 (1133)
T KOG1943|consen  426 LKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS------DLKPVLQSLASALLIVALFDREVNCRRAASAALQENV  499 (1133)
T ss_pred             HHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh------hhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHh
Confidence            9888633        355898875   5555543332      112233333445667899999999999999997765 


Q ss_pred             hCCC---CCccccccCCCcchhhHh--------------------------hHhhcCCchhHHHHHHHHHHHHhcCHHHH
Q 012448          154 AGFP---NGIDIIFPADNKAATDLG--------------------------NLVAQCSSLGRVRVLSLIVKLFSVSRSVA  204 (463)
Q Consensus       154 ak~~---~~l~~l~~~~~~~~~~L~--------------------------~~~~~~~~~vR~Rv~el~v~ia~~S~~~~  204 (463)
                      +++.   .|++.+...+-+..+...                          +.+.+=|..+|-..-..+-+++..-++. 
T Consensus       500 GR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~-  578 (1133)
T KOG1943|consen  500 GRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKY-  578 (1133)
T ss_pred             ccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHh-
Confidence            5543   488877776665411111                          0112224445544444444444444433 


Q ss_pred             HHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHH
Q 012448          205 SVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAE  247 (463)
Q Consensus       205 ~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~  247 (463)
                        .. .+.++.++..... .|...|--+.--..|+..+-|+..
T Consensus       579 --~a-~~~L~~lld~~ls-~~~~~r~g~~la~~ev~~~~~~l~  617 (1133)
T KOG1943|consen  579 --LA-DYVLPPLLDSTLS-KDASMRHGVFLAAGEVIGALRKLE  617 (1133)
T ss_pred             --hc-ccchhhhhhhhcC-CChHHhhhhHHHHHHHHHHhhhhh
Confidence              22 3678999999888 999998888877788777666665

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=95.20  E-value=3.9  Score=44.75  Aligned_cols=115  Identities=12%  Similarity=0.126  Sum_probs=90.2

Q ss_pred             CChHHHHHccccCCCCcc-----hHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCch
Q 012448           39 FPLSVILNTLQTKPDVPG-----LEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDL  113 (463)
Q Consensus        39 ~~l~~L~~~L~~~~~~~~-----~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~  113 (463)
                      ..+|.|++.|..++++++     .-..+..||+- |.+..++.+...+..|+..-++.++=.=|+.+.-++|.+......
T Consensus       321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLql-faq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~  399 (858)
T COG5215         321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQL-FAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCE  399 (858)
T ss_pred             HHHHHHHHHHHhcCCCccccccchhhhHHHHHHH-HHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccH
Confidence            468999999988763321     22345557764 455667777777999999999999999999999999999875521


Q ss_pred             hHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448          114 EASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN  158 (463)
Q Consensus       114 ~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~  158 (463)
                       +- +..++.  .++|.|++...|+-+.|+..++-.+..|+.|.+
T Consensus       400 -~~-lT~~V~--qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va  440 (858)
T COG5215         400 -DC-LTKIVP--QALPGIENEMSDSCLWVKSTTAWCFGAIADHVA  440 (858)
T ss_pred             -HH-HHhhHH--hhhHHHHHhcccceeehhhHHHHHHHHHHHHHH
Confidence             22 444444  579999999999999999999999999998864

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=95.10  E-value=0.41  Score=48.58  Aligned_cols=171  Identities=18%  Similarity=0.134  Sum_probs=111.6

Q ss_pred             hcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhc-CCCHHHHHHHHHHHHHHHhCCchhH
Q 012448           37 DRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLT-ADSHSVKRLACKTVTCLLEDSDLEA  115 (463)
Q Consensus        37 ~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~-h~~~~Vr~Lal~~l~~i~~~~~~~~  115 (463)
                      ...-+|.+.+.|.+.+  +..+..+..+|..+    ..    +...+.+...|+ +++..||.-+.+.++++-....- .
T Consensus        72 ~~~av~~l~~~l~d~~--~~vr~~a~~aLg~~----~~----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~-~  140 (335)
T COG1413          72 SEEAVPLLRELLSDED--PRVRDAAADALGEL----GD----PEAVPPLVELLENDENEGVRAAAARALGKLGDERAL-D  140 (335)
T ss_pred             hHHHHHHHHHHhcCCC--HHHHHHHHHHHHcc----CC----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhh-H
Confidence            3455677788888766  66777777766655    22    234566666677 79999999999999997432200 1


Q ss_pred             HHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHH
Q 012448          116 SCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVK  195 (463)
Q Consensus       116 ~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~  195 (463)
                      . +...+.+.........+ -.+...+-..|+.+|..+.          ++...+  .+.+.+...+..+|.++...+.+
T Consensus       141 ~-l~~~l~~~~~~~a~~~~-~~~~~~~r~~a~~~l~~~~----------~~~~~~--~l~~~l~~~~~~vr~~Aa~aL~~  206 (335)
T COG1413         141 P-LLEALQDEDSGSAAAAL-DAALLDVRAAAAEALGELG----------DPEAIP--LLIELLEDEDADVRRAAASALGQ  206 (335)
T ss_pred             H-HHHHhccchhhhhhhhc-cchHHHHHHHHHHHHHHcC----------ChhhhH--HHHHHHhCchHHHHHHHHHHHHH
Confidence            1 23333222211100000 1122256666666666554          344555  77778888999999999999999


Q ss_pred             HHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhh
Q 012448          196 LFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEI  242 (463)
Q Consensus       196 ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t  242 (463)
                      +...+.         .+.+.+..-+.+ ++..+|..++.-+.++..-
T Consensus       207 ~~~~~~---------~~~~~l~~~~~~-~~~~vr~~~~~~l~~~~~~  243 (335)
T COG1413         207 LGSENV---------EAADLLVKALSD-ESLEVRKAALLALGEIGDE  243 (335)
T ss_pred             hhcchh---------hHHHHHHHHhcC-CCHHHHHHHHHHhcccCcc
Confidence            998872         345666777888 9999999999988776653

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.04  E-value=1.2  Score=44.94  Aligned_cols=193  Identities=16%  Similarity=0.113  Sum_probs=117.3

Q ss_pred             HHHHHhccccccchhhc-hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHH
Q 012448           64 CLERIFKTKYGASLIPH-YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEV  142 (463)
Q Consensus        64 vL~~il~~~~~~~l~~~-~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~v  142 (463)
                      +|+.+-....+...... +...+..|++|+++.||+.+++.+|-+.--+   .. .+     .+-++++..++..++..|
T Consensus        10 lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld---~~-~a-----~~~l~l~~~~~~~~~~~v   80 (298)
T PF12719_consen   10 LLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLD---KE-LA-----KEHLPLFLQALQKDDEEV   80 (298)
T ss_pred             HHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC---hH-HH-----HHHHHHHHHHHHhCCHHH
Confidence            55555433334333333 4567779999999999999999999865433   11 11     145778888888889999


Q ss_pred             HHHHHHHHHHHhCCCCCccccccCCC-------cc-hhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHH
Q 012448          143 ATASMDAIKKLAGFPNGIDIIFPADN-------KA-ATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLT  214 (463)
Q Consensus       143 a~~A~~~L~~lak~~~~l~~l~~~~~-------~~-~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~  214 (463)
                      ...|++++.++.-.. |.+.+-....       .. ...+.+.+.+.++.+|.-+.|-++++.-...-.-    ...++.
T Consensus        81 ~~~al~~l~Dll~~~-g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~  155 (298)
T PF12719_consen   81 KITALKALFDLLLTH-GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLS  155 (298)
T ss_pred             HHHHHHHHHHHHHHc-CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHH
Confidence            999999999996544 4432222111       00 0133345566688889999998888775532111    123444


Q ss_pred             HHHhhcCC--C-CcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhccccc--chh
Q 012448          215 LLEEGVSK--K-NDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSAT--ETI  270 (463)
Q Consensus       215 ~ll~eL~~--~-~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~--dpl  270 (463)
                      .++-...+  | ++.-+|----=.+.-.+.+....|-....+.++.+-.......+  +|.
T Consensus       156 ~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~  216 (298)
T PF12719_consen  156 RLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPL  216 (298)
T ss_pred             HHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCch
Confidence            44444333  1 33444433333445566655556777777777777666655444  554

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=94.99  E-value=0.48  Score=51.62  Aligned_cols=111  Identities=16%  Similarity=0.233  Sum_probs=81.8

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL  119 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~  119 (463)
                      .+|.+|.|..+..  +..++.+..+.+.++....+ .-.+.+.+.+..++....=+-|..++.-+|.++++.   .. ..
T Consensus       217 ~lp~il~~~~d~~--~~Vr~Aa~~a~kai~~~~~~-~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a---p~-qL  289 (569)
T KOG1242|consen  217 ILPSILTNFGDKI--NKVREAAVEAAKAIMRCLSA-YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA---PK-QL  289 (569)
T ss_pred             hHHHHHHHhhccc--hhhhHHHHHHHHHHHHhcCc-chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc---hH-HH
Confidence            4788999987765  66777777777777666543 333345666666666666677888999999888877   44 22


Q ss_pred             HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448          120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN  158 (463)
Q Consensus       120 ~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~  158 (463)
                      ..+. ++++|.+...+.|-..+|.+++..+|.+++..-+
T Consensus       290 s~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svid  327 (569)
T KOG1242|consen  290 SLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID  327 (569)
T ss_pred             HHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc
Confidence            2222 3699999999999999999999999999986543

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.84  E-value=1.4  Score=48.78  Aligned_cols=265  Identities=18%  Similarity=0.251  Sum_probs=159.7

Q ss_pred             cCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhc---hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchh
Q 012448           38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPH---YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLE  114 (463)
Q Consensus        38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~---~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~  114 (463)
                      ++.+|.++.-.++.+  |..+..+..|+..+.-. .++.+.-.   +.+-+-.--..++|.||...|.++..+++--  .
T Consensus       173 ~~mipkfl~f~~h~s--pkiRs~A~~cvNq~i~~-~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr--~  247 (885)
T KOG2023|consen  173 NIMIPKFLQFFKHPS--PKIRSHAVGCVNQFIII-QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR--P  247 (885)
T ss_pred             HHhHHHHHHHHhCCC--hhHHHHHHhhhhheeec-CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc--H
Confidence            456788888888766  88999998888876432 23333333   3444434447889999999999999998733  1


Q ss_pred             HHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccc-----------cccCCCcchhhHhhHhhcCCc
Q 012448          115 ASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDI-----------IFPADNKAATDLGNLVAQCSS  183 (463)
Q Consensus       115 ~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~-----------l~~~~~~~~~~L~~~~~~~~~  183 (463)
                      +. +.--+  ++++...+...+|.|.+||-.|-.....+|..+---++           ++..=..++.++. ++ ..++
T Consensus       248 dk-l~phl--~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~-LL-~~~e  322 (885)
T KOG2023|consen  248 DK-LVPHL--DNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDII-LL-KNNE  322 (885)
T ss_pred             Hh-cccch--HHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHH-Hh-cCcc
Confidence            22 22222  25888999999999999999999999999988721111           1111111111111 11 1111


Q ss_pred             h---------------------------------------------hHHHH-----HHHHHHHHhcCHHHHHHHHhhccH
Q 012448          184 L---------------------------------------------GRVRV-----LSLIVKLFSVSRSVASVIFKANLL  213 (463)
Q Consensus       184 ~---------------------------------------------vR~Rv-----~el~v~ia~~S~~~~~~v~~sgl~  213 (463)
                      .                                             -..|-     +++++++.++  +.+..     +|
T Consensus       323 eD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~--elL~~-----l~  395 (885)
T KOG2023|consen  323 EDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD--ELLPI-----LL  395 (885)
T ss_pred             ccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH--HHHHH-----HH
Confidence            1                                             12333     3344455443  33332     45


Q ss_pred             HHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHH-HHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchh
Q 012448          214 TLLEEGVSKKNDTLETLSILELLYELAE-IQHSA-EFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMF  291 (463)
Q Consensus       214 ~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~-~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~  291 (463)
                      |.+-..|.+ ++=.+|=..+=-+..+|+ ...|. .||-  -++..|+..+.+  .-|++|+-+=-..+++..+  +   
T Consensus       396 PlLk~~L~~-~~W~vrEagvLAlGAIAEGcM~g~~p~Lp--eLip~l~~~L~D--KkplVRsITCWTLsRys~w--v---  465 (885)
T KOG2023|consen  396 PLLKEHLSS-EEWKVREAGVLALGAIAEGCMQGFVPHLP--ELIPFLLSLLDD--KKPLVRSITCWTLSRYSKW--V---  465 (885)
T ss_pred             HHHHHHcCc-chhhhhhhhHHHHHHHHHHHhhhcccchH--HHHHHHHHHhcc--CccceeeeeeeeHhhhhhh--H---
Confidence            666666777 899999998888888888 33332 3333  366777777765  5577775444445666552  1   


Q ss_pred             cchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhh
Q 012448          292 IDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQI  329 (463)
Q Consensus       292 ~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~I  329 (463)
                      ..++-.+.+-+.++.+++.+-.+....+++|.-+++.+
T Consensus       466 ~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtl  503 (885)
T KOG2023|consen  466 VQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATL  503 (885)
T ss_pred             hcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            11111223445566666666667777888877766544

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.84  E-value=0.12  Score=52.50  Aligned_cols=182  Identities=18%  Similarity=0.203  Sum_probs=118.7

Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhc----CCchHHHHHHHHHHHHHhCC
Q 012448           81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLI----NGNEEVATASMDAIKKLAGF  156 (463)
Q Consensus        81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~----d~d~~va~~A~~~L~~lak~  156 (463)
                      |.+++. -|+++|+.++..++.-+..++...........     .++++.++..+.    .++.++-..|+..|..+.+.
T Consensus       107 ~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-----~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~  180 (312)
T PF03224_consen  107 YSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-----KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS  180 (312)
T ss_dssp             HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-----HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred             HHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccchH-----HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence            455555 99999999999999999999987743222011     244455555544    46677779999999999988


Q ss_pred             CCCccccccCCCcchhhHhhHh-----hcCCchhHHHHHHHHHHH-HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHH
Q 012448          157 PNGIDIIFPADNKAATDLGNLV-----AQCSSLGRVRVLSLIVKL-FSVSRSVASVIFKANLLTLLEEGVSKKNDTLETL  230 (463)
Q Consensus       157 ~~~l~~l~~~~~~~~~~L~~~~-----~~~~~~vR~Rv~el~v~i-a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~l  230 (463)
                      ++--+.++..+.++  .|.+.+     ...+..+....+-+++=. -+-+++.++...+.++++.+..-++.+.-.=|--
T Consensus       181 ~~~R~~f~~~~~v~--~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvR  258 (312)
T PF03224_consen  181 KEYRQVFWKSNGVS--PLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVR  258 (312)
T ss_dssp             HHHHHHHHTHHHHH--HHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHH
T ss_pred             chhHHHHHhcCcHH--HHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHH
Confidence            86556777777777  777665     245555555555544433 6689999999999999999999888865554555


Q ss_pred             hHHHHHHHHHhhHH--HHHHHHhcchHHHHHHHhcccccchh
Q 012448          231 SILELLYELAEIQH--SAEFLSRTTLLQLLCSLIGNSATETI  270 (463)
Q Consensus       231 nalell~eLa~t~~--g~~~L~~~gi~~~L~~~i~~~~~dpl  270 (463)
                      -++-+++.+.+...  ...-++..|+...+-.+-...=+||-
T Consensus       259 v~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded  300 (312)
T PF03224_consen  259 VSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED  300 (312)
T ss_dssp             HHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence            56777888888433  66777777777766655554336664

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.83  E-value=2  Score=43.56  Aligned_cols=276  Identities=14%  Similarity=0.095  Sum_probs=138.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhc-cCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-
Q 012448           83 PFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLID-YEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-  160 (463)
Q Consensus        83 ~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~-~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-  160 (463)
                      ..++.-|..++|.||..|..-+.......      ...+..+ ...++.+...+.+.+.  ++.|+.+|.+++... ++ 
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~------~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~   76 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGRG------LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELR   76 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhccccc------hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHH
Confidence            45777788899999999987766654432      2222222 2366777778888777  888888888887654 33 


Q ss_pred             cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHh------hccHHHHHhhcCCCCcHHHHHh-HH
Q 012448          161 DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFK------ANLLTLLEEGVSKKNDTLETLS-IL  233 (463)
Q Consensus       161 ~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~------sgl~~~ll~eL~~~~DvLv~ln-al  233 (463)
                      +++.+. ++.  .+...+.+.-.-+--=+|-+++++++.-...+....+      +|+...+-.-.+.+----++.+ .+
T Consensus        77 ~~ll~~-~~k--~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA  153 (353)
T KOG2973|consen   77 KKLLQD-LLK--VLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLA  153 (353)
T ss_pred             HHHHHH-HHH--HHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHH
Confidence            333322 211  1111222221112223455666666665544443322      3333333322222100111222 23


Q ss_pred             HHHHHHHhhHHHHHHHHhc---------------------chHHHHHHHhcccc-cchhhhhhhh-hHhhhhccccccch
Q 012448          234 ELLYELAEIQHSAEFLSRT---------------------TLLQLLCSLIGNSA-TETILRSRAI-MISGRLLSKDDSHM  290 (463)
Q Consensus       234 ell~eLa~t~~g~~~L~~~---------------------gi~~~L~~~i~~~~-~dpl~r~~ai-li~g~i~~f~~~~~  290 (463)
                      -++..|.+++.|.+|+...                     |++..|-+...++. -+.+.. ..+ +.+.+++|-.+.-.
T Consensus       154 ~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPlagpee  232 (353)
T KOG2973|consen  154 PVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLAGPEE  232 (353)
T ss_pred             HHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcCCccc
Confidence            4677788888888887533                     33333333222222 111100 000 11112222100001


Q ss_pred             hcchhhhhhhHHHHHHHh-ccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchh-hHhHHh
Q 012448          291 FIDESSAKTVISAIDGRL-GFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGK-QLAALH  368 (463)
Q Consensus       291 ~~~~~~~k~~p~~l~~~f-~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~-k~r~L~  368 (463)
                      |=++-..+ .|.=++.+- +.-.++|+.++..-++++=+++.|-.|++.+...   ..--++.-+........ +..|.+
T Consensus       233 ~sEEdm~~-LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~k---gvYpilRElhk~e~ded~~~ace~  308 (353)
T KOG2973|consen  233 LSEEDMAK-LPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSK---GVYPILRELHKWEEDEDIREACEQ  308 (353)
T ss_pred             cCHHHHhc-CCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhc---CchHHHHHHhcCCCcHHHHHHHHH
Confidence            10010233 444444321 2335688999999999999999999999999974   22233344444444333 445554


Q ss_pred             hhHHHhc
Q 012448          369 GLANIAG  375 (463)
Q Consensus       369 al~~Il~  375 (463)
                      ....+.+
T Consensus       309 vvq~Lv~  315 (353)
T KOG2973|consen  309 VVQMLVR  315 (353)
T ss_pred             HHHHHHh
Confidence            4444444

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=94.81  E-value=6.5  Score=41.57  Aligned_cols=353  Identities=17%  Similarity=0.156  Sum_probs=180.9

Q ss_pred             hHHHHHccccCCCCc-chHHHHHHHHHHHhccccccchhhchHHHHHHhhcC-----CCHHHHHHHHHHHHHHHhCCchh
Q 012448           41 LSVILNTLQTKPDVP-GLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTA-----DSHSVKRLACKTVTCLLEDSDLE  114 (463)
Q Consensus        41 l~~L~~~L~~~~~~~-~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h-----~~~~Vr~Lal~~l~~i~~~~~~~  114 (463)
                      +|.++.-|.++++.+ ...+.+-.+|..+  .. ...+.......+..-|.+     .+...-..++..+.+++++....
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~l--s~-~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~   77 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAAL--ST-SPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED   77 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHH--HC-ChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence            578889998876332 2222233344443  22 222233333333333332     26778889999999998765321


Q ss_pred             H-HHHHHHhhccCcHHHHHHhh----cCC-c--hHHHHHHHHHHHHHhCCCC-Cc-cccccCCCcchhhHhhHhh-----
Q 012448          115 A-SCALQLLIDYEIYPLLLDCL----ING-N--EEVATASMDAIKKLAGFPN-GI-DIIFPADNKAATDLGNLVA-----  179 (463)
Q Consensus       115 ~-~~~~~~~~~~~l~~~li~~l----~d~-d--~~va~~A~~~L~~lak~~~-~l-~~l~~~~~~~~~~L~~~~~-----  179 (463)
                      . ..-.....+..+++.+....    ... +  ..+=..+..++.-+-++-+ .- +.+.+       .+-+...     
T Consensus        78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~-------~~~~lf~~~~~~  150 (415)
T PF12460_consen   78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILD-------ELYSLFLSPKSF  150 (415)
T ss_pred             cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHH-------HHHHHHcccccc
Confidence            2 00112222222444444322    111 1  3344444555554443332 11 11110       0000111     


Q ss_pred             -----cCC--chhHHHHHHH-HHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhh-HHHHHHHH
Q 012448          180 -----QCS--SLGRVRVLSL-IVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEI-QHSAEFLS  250 (463)
Q Consensus       180 -----~~~--~~vR~Rv~el-~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t-~~g~~~L~  250 (463)
                           ..+  .....|...+ ..-+++..++.--. ....+++.++.-..+++|...+..+++++.-++.. +.|.   .
T Consensus       151 ~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~  226 (415)
T PF12460_consen  151 SPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---D  226 (415)
T ss_pred             CCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---h
Confidence                 111  1123333333 33344444433210 12247777777766668899999999999998884 3333   2


Q ss_pred             hcchHHHHHHHhcccccchhhhhhhhhHhhhhcccccc-chhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhh
Q 012448          251 RTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDS-HMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQI  329 (463)
Q Consensus       251 ~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~-~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~I  329 (463)
                      -..+++.+...+ ....++-.+..++-+..++.-  +. ++.  +|.   ...+++.+++++.+  +..-..|..++|.|
T Consensus       227 l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~Wi~K--aLv~R~--~~~---~~~~~~~L~~lL~~--~~~g~~aA~~f~il  296 (415)
T PF12460_consen  227 LDEFLDSLLQSI-SSSEDSELRPQALEILIWITK--ALVMRG--HPL---ATELLDKLLELLSS--PELGQQAAKAFGIL  296 (415)
T ss_pred             HHHHHHHHHhhh-cccCCcchhHHHHHHHHHHHH--HHHHcC--Cch---HHHHHHHHHHHhCC--hhhHHHHHHHHhhH
Confidence            224555555554 223333345455655555443  22 221  111   12345555555555  66778899999998


Q ss_pred             cCCHHHH---------HHHhhcCchhHHHHHHHHHhhccc---hhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHH
Q 012448          330 GSSIQGA---------TLLLLCLPPAARHVIDAAFDRQGH---GKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLI  397 (463)
Q Consensus       330 gss~eGk---------~~L~~~~~~~~~~~l~~~~~~~~~---~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~  397 (463)
                      -+..+..         +.|.+  +-.+..++....+...+   ..|...|-||+.|+..-  |.+. +..+-+. |..+ 
T Consensus       297 ~~d~~~~l~~~~~a~vklLyk--QR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~v--P~~v-l~~~l~~-LlPL-  369 (415)
T PF12460_consen  297 LSDSDDVLNKENHANVKLLYK--QRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNV--PKSV-LLPELPT-LLPL-  369 (415)
T ss_pred             hcCcHHhcCccccchhhhHHh--HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhC--CHHH-HHHHHHH-HHHH-
Confidence            8762221         33444  24555555555555543   24889999999999954  4222 2222222 2222 


Q ss_pred             HHHHhhCCCCChhHHHHHHhcCCHHHHHHHHHHHHHhhcCc
Q 012448          398 YEVASRSSKLTPSGLFLSVLQQAAEIRLAGYRMITGLVARP  438 (463)
Q Consensus       398 ye~~~~~~~~~p~~~~~~~~qpF~elr~A~~~~l~~l~~~~  438 (463)
                                    ++.++.-|.+++|.+++..|..+....
T Consensus       370 --------------LlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  370 --------------LLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             --------------HHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence                          344456889999999999999988776

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.66  E-value=0.2  Score=50.76  Aligned_cols=181  Identities=17%  Similarity=0.150  Sum_probs=118.1

Q ss_pred             CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhh--ccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCC
Q 012448           91 ADSHSVKRLACKTVTCLLEDSDLEASCALQLLI--DYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADN  168 (463)
Q Consensus        91 h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~--~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~  168 (463)
                      .+++.+.+.++.-+..++.....-..-......  +...+..++..+..+|..+...|+.+|..+..+.+.-..-...+.
T Consensus        68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~  147 (312)
T PF03224_consen   68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEA  147 (312)
T ss_dssp             ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHH
Confidence            568888999999999988755211110222222  123788888899999999999999999999888764321100122


Q ss_pred             cc--hhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhc------CCCCcHHHHHhHHHHHHHHH
Q 012448          169 KA--ATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGV------SKKNDTLETLSILELLYELA  240 (463)
Q Consensus       169 ~~--~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL------~~~~DvLv~lnalell~eLa  240 (463)
                      +.  ...|.+.+...+..+..=+..++..+. .+++.-....+.|.++.+..-+      +++.++-++-.++=++=-|.
T Consensus       148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS  226 (312)
T PF03224_consen  148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS  226 (312)
T ss_dssp             HHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh
Confidence            22  003332222233434445566777787 4577778888899999999988      55689999999999999999


Q ss_pred             hhHHHHHHHHhcchHHHHHHHhcccccchhhh
Q 012448          241 EIQHSAEFLSRTTLLQLLCSLIGNSATETILR  272 (463)
Q Consensus       241 ~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r  272 (463)
                      =.++.++.+.+.+++..|++.+..+.-.-.+|
T Consensus       227 F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvR  258 (312)
T PF03224_consen  227 FEPEIAEELNKKYLIPLLADILKDSIKEKVVR  258 (312)
T ss_dssp             TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHH
T ss_pred             cCHHHHHHHhccchHHHHHHHHHhcccchHHH
Confidence            99999999999999999999999988778776

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=94.66  E-value=2.1  Score=48.77  Aligned_cols=230  Identities=16%  Similarity=0.143  Sum_probs=162.2

Q ss_pred             HhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-chhhchHHHHHHhhcCCCH
Q 012448           16 SASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-SLIPHYMPFVQVGLTADSH   94 (463)
Q Consensus        16 ~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-~l~~~~~~~l~~gL~h~~~   94 (463)
                      +|+.+.+.    +...-.+.+....+|.+.+.+++..  .-+++.+...+..+++-...+ +....+.+.+....+.++.
T Consensus       257 ~a~~l~~~----a~~~~~~~~~s~v~~~~~~L~~Ddq--dsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~  330 (759)
T KOG0211|consen  257 VASNLGNI----AKVLESEIVKSEVLPTLIQLLRDDQ--DSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSW  330 (759)
T ss_pred             HHhhhHHH----HHHHHHHHHHhhccHHHhhhhhcch--hhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhH
Confidence            45555555    4444457777777888887777644  356777777777777777666 7777889999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC--ccccccCCCcchh
Q 012448           95 SVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG--IDIIFPADNKAAT  172 (463)
Q Consensus        95 ~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~--l~~l~~~~~~~~~  172 (463)
                      +||..+.....-+-+.-       -+-.......+.....+++.+.++-.+++.-..+++..-+.  ...+.+...++  
T Consensus       331 ~v~~~~~~~~~~L~~~~-------~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp--  401 (759)
T KOG0211|consen  331 RVSYMVADKFSELSSAV-------GPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILP--  401 (759)
T ss_pred             HHHHHHhhhhhhHHHHh-------ccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhH--
Confidence            99998866555432211       11222335677777888888888888888888888766541  23455666677  


Q ss_pred             hHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHh
Q 012448          173 DLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSR  251 (463)
Q Consensus       173 ~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~  251 (463)
                      .++..++..+..+|-+....+..++-.++  .+. .-+.+++..+..+++ .|.-|++|-.+.+..+-. ...+-.+.++
T Consensus       402 ~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~-ti~~llp~~~~~l~d-e~~~V~lnli~~ls~~~~v~~v~g~~~~s  477 (759)
T KOG0211|consen  402 EVQVLVLDNALHVRSALASVITGLSPILP--KER-TISELLPLLIGNLKD-EDPIVRLNLIDKLSLLEEVNDVIGISTVS  477 (759)
T ss_pred             HHHHHHhcccchHHHHHhccccccCccCC--cCc-CccccChhhhhhcch-hhHHHHHhhHHHHHHHHhccCcccchhhh
Confidence            88888888888888886666655544444  111 123577888889999 999999999998877666 6666677777


Q ss_pred             cchHHHHHHHhcc
Q 012448          252 TTLLQLLCSLIGN  264 (463)
Q Consensus       252 ~gi~~~L~~~i~~  264 (463)
                      +..+..|+++..+
T Consensus       478 ~slLp~i~el~~d  490 (759)
T KOG0211|consen  478 NSLLPAIVELAED  490 (759)
T ss_pred             hhhhhhhhhhccc
Confidence            8888888777544

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.50  E-value=2.4  Score=49.55  Aligned_cols=253  Identities=19%  Similarity=0.148  Sum_probs=149.7

Q ss_pred             HHHHHHhccccccchhhc---hHHHHHHhhc--CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC
Q 012448           63 VCLERIFKTKYGASLIPH---YMPFVQVGLT--ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN  137 (463)
Q Consensus        63 ~vL~~il~~~~~~~l~~~---~~~~l~~gL~--h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d  137 (463)
                      .+|.-++...+.+.+..+   ...-+..+++  |-|..|.+.++.-++.+++.++.+   .-+-..--.-+..+..-..+
T Consensus        73 ~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~---aW~~~~t~~~~~~il~~~~h  149 (1176)
T KOG1248|consen   73 YLLVLILKYVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDAS---AWSYSSTKTELFGILAFAAH  149 (1176)
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchh---hhccccHHHHHHHHHHHHhc
Confidence            477777666554444333   3555666776  999999999999999999877321   11100000123333345557


Q ss_pred             CchHHHHHHHHHHHHHhCCCCC-ccccccCCCcc----hhhHhhHhhcCCchhHHHHHHHHHHHHhc-CHHHHHHHHhhc
Q 012448          138 GNEEVATASMDAIKKLAGFPNG-IDIIFPADNKA----ATDLGNLVAQCSSLGRVRVLSLIVKLFSV-SRSVASVIFKAN  211 (463)
Q Consensus       138 ~d~~va~~A~~~L~~lak~~~~-l~~l~~~~~~~----~~~L~~~~~~~~~~vR~Rv~el~v~ia~~-S~~~~~~v~~sg  211 (463)
                      +...+.+.|..++..+.+.|+- ....-++-...    ...+...+....-+--+|.+.++-.+... -....+     .
T Consensus       150 ~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~-----s  224 (1176)
T KOG1248|consen  150 KKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIK-----S  224 (1176)
T ss_pred             CchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHH-----H
Confidence            7889999999999999998873 23322111100    12333333323334456777777666544 122222     2


Q ss_pred             cHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHH-HHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccc-
Q 012448          212 LLTLLEEGVSKKNDTLETLSILELLYELAEIQHS-AEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSH-  289 (463)
Q Consensus       212 l~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g-~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~-  289 (463)
                      +=..+++..+. .++++.++|++++..|-+...+ ..-=...-++..|..+ .-+.+|++      +..+++..+-+.+ 
T Consensus       225 l~e~lL~i~~~-s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l-~ps~~D~~------~t~~W~~v~~~~~~  296 (1176)
T KOG1248|consen  225 LCEVLLNITTE-SPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTL-SPSENDDL------LTVAWLKVLNEAHD  296 (1176)
T ss_pred             HHHHHHhhccc-chHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh-CCCccchH------HHHHHHHHHHHHHH
Confidence            33456777777 9999999999999999994333 2222233444444443 33457775      3467777653322 


Q ss_pred             hh-cchh--hhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448          290 MF-IDES--SAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS  331 (463)
Q Consensus       290 ~~-~~~~--~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs  331 (463)
                      .+ ..++  +....|.++..+|...++.-.....+|--++-.|+.
T Consensus       297 ~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~  341 (1176)
T KOG1248|consen  297 ILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILK  341 (1176)
T ss_pred             HHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhc
Confidence            22 1122  444577777766665566666667777777777776

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=94.49  E-value=5.5  Score=44.88  Aligned_cols=281  Identities=16%  Similarity=0.190  Sum_probs=156.6

Q ss_pred             hHHHHHccccCCCCcchHHHHHHHHHHHhccccc--cchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448           41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG--ASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA  118 (463)
Q Consensus        41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~--~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~  118 (463)
                      +..|.+.++++...   ..-.-.++..+-.++..  ....+++..-+..-|+|+++.||+-++..+++++.--.. -. -
T Consensus       761 idgil~Afqeqtt~---d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlkt-c~-e  835 (1172)
T KOG0213|consen  761 IDGILYAFQEQTTE---DSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKT-CG-E  835 (1172)
T ss_pred             HHHHHHHHHhcccc---hhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHh-cc-H
Confidence            34456666655411   11111244444334333  334566777888899999999999999999998641100 00 0


Q ss_pred             HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccC--CCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448          119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPA--DNKAATDLGNLVAQCSSLGRVRVLSLIVKL  196 (463)
Q Consensus       119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~--~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i  196 (463)
                      -+++.-  +=..+.--|+++..+|--..+++|+.|.... |+...++|  +.++  .|.+++.+...+|.-...+++-.|
T Consensus       836 e~~m~~--lGvvLyEylgeeypEvLgsILgAikaI~nvi-gm~km~pPi~dllP--rltPILknrheKVqen~IdLvg~I  910 (1172)
T KOG0213|consen  836 EKLMGH--LGVVLYEYLGEEYPEVLGSILGAIKAIVNVI-GMTKMTPPIKDLLP--RLTPILKNRHEKVQENCIDLVGTI  910 (1172)
T ss_pred             HHHHHH--hhHHHHHhcCcccHHHHHHHHHHHHHHHHhc-cccccCCChhhhcc--cchHhhhhhHHHHHHHHHHHHHHH
Confidence            011111  1122346889999999888888888775332 55444543  4566  777888889999999999999999


Q ss_pred             HhcCHHH------HHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh--hHHHHHHHHhcchHHHHHHHhc-----
Q 012448          197 FSVSRSV------ASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE--IQHSAEFLSRTTLLQLLCSLIG-----  263 (463)
Q Consensus       197 a~~S~~~------~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~--t~~g~~~L~~~gi~~~L~~~i~-----  263 (463)
                      |..+++-      +..|.  |++    ..|+. ----.|-|+.+-+.-+|+  .||-        ++..|.+.+.     
T Consensus       911 adrgpE~v~aREWMRIcf--eLl----elLka-hkK~iRRaa~nTfG~IakaIGPqd--------VLatLlnnLkvqeRq  975 (1172)
T KOG0213|consen  911 ADRGPEYVSAREWMRICF--ELL----ELLKA-HKKEIRRAAVNTFGYIAKAIGPQD--------VLATLLNNLKVQERQ  975 (1172)
T ss_pred             HhcCcccCCHHHHHHHHH--HHH----HHHHH-HHHHHHHHHHhhhhHHHHhcCHHH--------HHHHHHhcchHHHHH
Confidence            9998763      22333  222    23333 333457788888887777  4442        3333333222     


Q ss_pred             ------------ccccchhhhhhhhhHhhhhcccc----cc---chh----cchhhhhhhHHHHHHHh-ccccCCChhhh
Q 012448          264 ------------NSATETILRSRAIMISGRLLSKD----DS---HMF----IDESSAKTVISAIDGRL-GFLQSQDSDEC  319 (463)
Q Consensus       264 ------------~~~~dpl~r~~aili~g~i~~f~----~~---~~~----~~~~~~k~~p~~l~~~f-~~~~~~d~~~~  319 (463)
                                  ....-||.-.|++| ..|=.|--    ++   ++|    |.+ ..+.|.-++.-++ +.+.+.|..-+
T Consensus       976 ~RvcTtvaIaIVaE~c~pFtVLPalm-neYrtPe~nVQnGVLkalsf~Feyige-mskdYiyav~PlleDAlmDrD~vhR 1053 (1172)
T KOG0213|consen  976 NRVCTTVAIAIVAETCGPFTVLPALM-NEYRTPEANVQNGVLKALSFMFEYIGE-MSKDYIYAVTPLLEDALMDRDLVHR 1053 (1172)
T ss_pred             hchhhhhhhhhhhhhcCchhhhHHHH-hhccCchhHHHHhHHHHHHHHHHHHHH-HhhhHHHHhhHHHHHhhccccHHHH
Confidence                        12244555445554 22222210    11   111    222 2333433332222 34566777777


Q ss_pred             hHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHH
Q 012448          320 ESALEALGQIGSSIQGATLLLLCLPPAARHVIDA  353 (463)
Q Consensus       320 ~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~  353 (463)
                      ..|+..+-.+.-.+-|.-.     .+.+-|+|+.
T Consensus      1054 qta~~~I~Hl~Lg~~g~g~-----eda~iHLLN~ 1082 (1172)
T KOG0213|consen 1054 QTAMNVIKHLALGVPGTGC-----EDALIHLLNL 1082 (1172)
T ss_pred             HHHHHHHHHHhcCCCCcCc-----HHHHHHHHHH
Confidence            8888777766655444322     2355666665

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.47  E-value=1.7  Score=44.71  Aligned_cols=184  Identities=16%  Similarity=0.140  Sum_probs=131.4

Q ss_pred             cCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHH
Q 012448          136 INGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTL  215 (463)
Q Consensus       136 ~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~  215 (463)
                      .+-++.=...|..-|..+..+-+...-+.+-+...  .+...+.+.+..+|.++..++..++.-.|.+-+.+.+.|.++.
T Consensus        93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~--~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~  170 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLV--PLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK  170 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHH--HHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence            44556667778888888888777655455555554  3443888999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcch
Q 012448          216 LEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDE  294 (463)
Q Consensus       216 ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~  294 (463)
                      ++.-++.+++.=++.+|+==++.+-. .+.|..-....++.+-|.+.+++...++-.+-.++...++++-......  +-
T Consensus       171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~--d~  248 (342)
T KOG2160|consen  171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE--DI  248 (342)
T ss_pred             HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh--hH
Confidence            99999986777888999998888888 7888877777777999999999877777655555555555554211110  00


Q ss_pred             hhhhhhHHHHHHHhccccCCChhhhhHHHHHH
Q 012448          295 SSAKTVISAIDGRLGFLQSQDSDECESALEAL  326 (463)
Q Consensus       295 ~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtl  326 (463)
                      .+..+++..+.   ..+...|....+.|+.++
T Consensus       249 ~~~~~f~~~~~---~l~~~l~~~~~e~~l~~~  277 (342)
T KOG2160|consen  249 ASSLGFQRVLE---NLISSLDFEVNEAALTAL  277 (342)
T ss_pred             HHHhhhhHHHH---HHhhccchhhhHHHHHHH
Confidence            02222333333   234455556666666654

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=94.38  E-value=0.7  Score=52.20  Aligned_cols=74  Identities=14%  Similarity=0.176  Sum_probs=58.4

Q ss_pred             cccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHH
Q 012448           73 YGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKK  152 (463)
Q Consensus        73 ~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~  152 (463)
                      ...++..++.+.+.++++|+++-||+-|+-++.++-+-+   .    ..+.+.|....+...+.|.|..|.+.|..+|..
T Consensus       120 ~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~----~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~  192 (757)
T COG5096         120 RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---K----DLYHELGLIDILKELVADSDPIVIANALASLAE  192 (757)
T ss_pred             ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---H----hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence            456777888888888888888888888888888876654   3    467777788888888888888888888888875


Q ss_pred             H
Q 012448          153 L  153 (463)
Q Consensus       153 l  153 (463)
                      +
T Consensus       193 i  193 (757)
T COG5096         193 I  193 (757)
T ss_pred             h
Confidence            5

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=94.37  E-value=1.7  Score=45.41  Aligned_cols=224  Identities=14%  Similarity=0.156  Sum_probs=142.9

Q ss_pred             CCChHHHHHHhhhhccCCCCCCh-HHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-chhhchHHH
Q 012448            7 MDDSNQLLDSASDFAYHPGVQND-AAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-SLIPHYMPF   84 (463)
Q Consensus         7 ~~~~~~~~~~~~~~a~~p~~~s~-~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-~l~~~~~~~   84 (463)
                      ..|...+-.+|=|+..|  ..++ +..+.+.+-..---+..||...+.....++|+=-..++++....+. ++-..+...
T Consensus        35 L~~~~~vraa~yRilRy--~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvra  112 (371)
T PF14664_consen   35 LSDSKEVRAAGYRILRY--LISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRA  112 (371)
T ss_pred             CCCcHHHHHHHHHHHHH--HHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence            34446677777788877  3334 4455555545445567888876644445667777999998876555 455678999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccc
Q 012448           85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIF  164 (463)
Q Consensus        85 l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~  164 (463)
                      ++...+|+++..|..|+..+..++-.+   +    +++...|-+..++..+.|+-.+++...+.++-.+..+|.--+.+-
T Consensus       113 lvaiae~~~D~lr~~cletL~El~l~~---P----~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~  185 (371)
T PF14664_consen  113 LVAIAEHEDDRLRRICLETLCELALLN---P----ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLR  185 (371)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHhhC---H----HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhc
Confidence            999999999999999999999988765   3    366778899999999999888899999999888887774222111


Q ss_pred             cCCCcchhhHhhHhh------cCCchh-HHHHHHHHH-HHHhcCHHHHHHHHhh-ccHHHHHhhcCCCCcHHHHHhHHHH
Q 012448          165 PADNKAATDLGNLVA------QCSSLG-RVRVLSLIV-KLFSVSRSVASVIFKA-NLLTLLEEGVSKKNDTLETLSILEL  235 (463)
Q Consensus       165 ~~~~~~~~~L~~~~~------~~~~~v-R~Rv~el~v-~ia~~S~~~~~~v~~s-gl~~~ll~eL~~~~DvLv~lnalel  235 (463)
                      ....++ .-+.+...      ..+... |++....++ .+-+.=+-.+-.|.+. .-+..++..|.- +..-+|...+++
T Consensus       186 ~~~dL~-~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~-p~~~ir~~Ildl  263 (371)
T PF14664_consen  186 PGFDLE-SLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRL-PNPEIRKAILDL  263 (371)
T ss_pred             CCccHH-HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcC-CCHHHHHHHHHH
Confidence            111111 01111111      112222 555444332 2322223333333332 346667777777 666677777777


Q ss_pred             HHHHHh
Q 012448          236 LYELAE  241 (463)
Q Consensus       236 l~eLa~  241 (463)
                      +.++-.
T Consensus       264 l~dllr  269 (371)
T PF14664_consen  264 LFDLLR  269 (371)
T ss_pred             HHHHHC
Confidence            777665

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=94.29  E-value=0.045  Score=40.57  Aligned_cols=52  Identities=19%  Similarity=0.204  Sum_probs=39.2

Q ss_pred             chHHHHHHHHHHHhccccc--cchhhchHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 012448           56 GLEDTLVVCLERIFKTKYG--ASLIPHYMPFVQVGLTADSHSVKRLACKTVTCL  107 (463)
Q Consensus        56 ~~~~~~~~vL~~il~~~~~--~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i  107 (463)
                      ..+..++.+|..+......  ....+++.+.|..+|+++++.||..+++++|++
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            3567778888775322211  235667899999999999999999999999874

...

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.26  E-value=1  Score=50.09  Aligned_cols=100  Identities=17%  Similarity=0.205  Sum_probs=75.2

Q ss_pred             chHHHHHHHHHHHHHhCCC---------CCccccccCCCcch--hhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHH
Q 012448          139 NEEVATASMDAIKKLAGFP---------NGIDIIFPADNKAA--TDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVI  207 (463)
Q Consensus       139 d~~va~~A~~~L~~lak~~---------~~l~~l~~~~~~~~--~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v  207 (463)
                      ++.|---+.+.+.+.-+.+         .||..++.+++-.|  .++-.++.+..+-+|.|+.-++-+++-.=||++.. 
T Consensus       103 ~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~-  181 (877)
T KOG1059|consen  103 DTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP-  181 (877)
T ss_pred             CccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh-
Confidence            4555555566666555544         24444555555330  13334667889999999999999999999998875 


Q ss_pred             HhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHH
Q 012448          208 FKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQH  244 (463)
Q Consensus       208 ~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~  244 (463)
                          .||++...|+| +|+-|+-.|+-++.|||. .|.
T Consensus       182 ----~FprL~EkLeD-pDp~V~SAAV~VICELArKnPk  214 (877)
T KOG1059|consen  182 ----CFPRLVEKLED-PDPSVVSAAVSVICELARKNPQ  214 (877)
T ss_pred             ----hHHHHHHhccC-CCchHHHHHHHHHHHHHhhCCc
Confidence                69999999999 999999999999999998 554

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.12  E-value=0.19  Score=40.31  Aligned_cols=57  Identities=25%  Similarity=0.204  Sum_probs=40.8

Q ss_pred             hhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCC
Q 012448          319 CESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKT  377 (463)
Q Consensus       319 ~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~  377 (463)
                      +-+|+|++|+||+|..|..+|..  .+.+..+++.+-..-.-+.|=-|+-+|+.|-...
T Consensus         4 lKaaLWaighIgss~~G~~lL~~--~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~   60 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDE--SDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE   60 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhh--cCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence            45899999999999999999995  3555555555443322233667788888887754

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=93.63  E-value=0.64  Score=43.25  Aligned_cols=111  Identities=14%  Similarity=0.095  Sum_probs=80.8

Q ss_pred             CHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchh
Q 012448           93 SHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAAT  172 (463)
Q Consensus        93 ~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~  172 (463)
                      +|.||.-++-.+|-+..+-   +. +++     ...+.+..||.|++..|.+.|+.+|+.+....  .- =+.+..+.  
T Consensus         1 ~~~vR~n~i~~l~DL~~r~---~~-~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d--~i-k~k~~l~~--   66 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRY---PN-LVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILED--MI-KVKGQLFS--   66 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhC---cH-HHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--ce-eehhhhhH--
Confidence            5889999999999877544   22 332     35788899999999999999999999997542  21 11223323  


Q ss_pred             hHhhHhhcCCchhHHHHHHHHHHHHhc-CHHHHHHHHhhccHHHHHhhcCC
Q 012448          173 DLGNLVAQCSSLGRVRVLSLIVKLFSV-SRSVASVIFKANLLTLLEEGVSK  222 (463)
Q Consensus       173 ~L~~~~~~~~~~vR~Rv~el~v~ia~~-S~~~~~~v~~sgl~~~ll~eL~~  222 (463)
                      .+...+...|+.||--+-.++.++++. ++..+-     ..|+.++.-|.+
T Consensus        67 ~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~-----~~~~e~i~~l~~  112 (178)
T PF12717_consen   67 RILKLLVDENPEIRSLARSFFSELLKKRNPNIIY-----NNFPELISSLNN  112 (178)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHH-----HHHHHHHHHHhC
Confidence            334477889999999999999999998 555542     466666666655

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.50  E-value=8.4  Score=44.54  Aligned_cols=72  Identities=13%  Similarity=0.121  Sum_probs=55.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHhCC-chhHHHHHHHhhccCcHHHHHHhhc-CCchHHHHHHHHHHHHHhCCCCC
Q 012448           82 MPFVQVGLTADSHSVKRLACKTVTCLLEDS-DLEASCALQLLIDYEIYPLLLDCLI-NGNEEVATASMDAIKKLAGFPNG  159 (463)
Q Consensus        82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~-~~~~~~~~~~~~~~~l~~~li~~l~-d~d~~va~~A~~~L~~lak~~~~  159 (463)
                      ..++-.-++.|.=-.|.=|||-+++...-. .+ ..++.      +++.++.+|+. |.++.|.-.|+-+|.-+-.+.+-
T Consensus       464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d-~~~l~------~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~  536 (1010)
T KOG1991|consen  464 VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD-PNNLS------EALELTHNCLLNDNELPVRVEAALALQSFISNQEQ  536 (1010)
T ss_pred             HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC-hHHHH------HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence            666777788999999999999999987322 11 12122      46888999999 99999999999999988766653


Q ss_pred             c
Q 012448          160 I  160 (463)
Q Consensus       160 l  160 (463)
                      .
T Consensus       537 ~  537 (1010)
T KOG1991|consen  537 A  537 (1010)
T ss_pred             h
Confidence            3

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=93.43  E-value=9  Score=39.56  Aligned_cols=234  Identities=15%  Similarity=0.126  Sum_probs=146.1

Q ss_pred             HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448          118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF  197 (463)
Q Consensus       118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia  197 (463)
                      +++.+.+.+++..++.+|..-+-+..+.+..+...+.+...|-                         |.+..  +-.+.
T Consensus        68 La~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~-------------------------~~~p~--v~yl~  120 (335)
T PF08569_consen   68 LAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGS-------------------------RSPPT--VDYLE  120 (335)
T ss_dssp             HHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTT-------------------------B--HH--HHHHH
T ss_pred             HHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCC-------------------------CCCch--HHHHH
Confidence            5666677799999999999999999999988888777665321                         00000  00111


Q ss_pred             hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhh
Q 012448          198 SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIM  277 (463)
Q Consensus       198 ~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ail  277 (463)
                      .+-         -.++..++...++ .|+  -++|=+||+|..+.+..++++.....+.++.+++....-|--.  =|.-
T Consensus       121 ~~~---------peil~~L~~gy~~-~di--al~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdias--daf~  186 (335)
T PF08569_consen  121 RHR---------PEILDILLRGYEN-PDI--ALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIAS--DAFS  186 (335)
T ss_dssp             T-----------THHHHHHHHGGGS-TTT--HHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHH--HHHH
T ss_pred             hCC---------HHHHHHHHHHhcC-ccc--cchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHH--HHHH
Confidence            121         2577788888888 887  7899999999999999999999999999999998865422210  0111


Q ss_pred             Hhhhhccccccch-hcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhh--cCchhHHHHHHHH
Q 012448          278 ISGRLLSKDDSHM-FIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLL--CLPPAARHVIDAA  354 (463)
Q Consensus       278 i~g~i~~f~~~~~-~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~--~~~~~~~~~l~~~  354 (463)
                      +.--++.   .++ ...+-+.++|-.|+...-.++++++-..+--++--||.|=.......++.+  .++..++-+|...
T Consensus       187 t~~~llt---~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL  263 (335)
T PF08569_consen  187 TFKELLT---RHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLL  263 (335)
T ss_dssp             HHHHHHH---SSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHT
T ss_pred             HHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHh
Confidence            1111111   010 011114566888888555788999999999999999998877777666654  2233444443332


Q ss_pred             HhhccchhhHhHHhhhHHHhcCCC--chhhhhhhhhHHHHHHHHH
Q 012448          355 FDRQGHGKQLAALHGLANIAGKTR--SEDKIILNADAEESLRHLI  397 (463)
Q Consensus       355 ~~~~~~~~k~r~L~al~~Il~~~r--~~~~~il~~~~e~~l~~~~  397 (463)
                      .+. +...|.-|.|-+..+..-++  +|...|+-..-|. |.+..
T Consensus       264 ~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~k-Ll~fl  306 (335)
T PF08569_consen  264 RDK-SKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREK-LLRFL  306 (335)
T ss_dssp             T-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHH-HHHHH
T ss_pred             cCc-chhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HHHHH
Confidence            221 11238899999998777653  2355555444444 54443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=93.40  E-value=0.35  Score=41.00  Aligned_cols=79  Identities=22%  Similarity=0.127  Sum_probs=61.9

Q ss_pred             chhHHHHHHHHHHHHhcCHHH-HHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHH
Q 012448          183 SLGRVRVLSLIVKLFSVSRSV-ASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSL  261 (463)
Q Consensus       183 ~~vR~Rv~el~v~ia~~S~~~-~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~  261 (463)
                      +.+|+|+++=+-.=..|.--. -+.+.+.++|..++.-+.. +++..+-.+++++..+++++.|.+++..-|....|.++
T Consensus         1 eEIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf-~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~kl   79 (98)
T PF14726_consen    1 EEIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNF-PPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKL   79 (98)
T ss_pred             ChHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCC-CCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHH
Confidence            368899887554333333222 2333577899999999999 99999999999999999999999999999999887655


Q ss_pred             h
Q 012448          262 I  262 (463)
Q Consensus       262 i  262 (463)
                      =
T Consensus        80 r   80 (98)
T PF14726_consen   80 R   80 (98)
T ss_pred             H
Confidence            4

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.27  E-value=0.71  Score=51.57  Aligned_cols=155  Identities=17%  Similarity=0.218  Sum_probs=116.5

Q ss_pred             hHHHHHHHhcCC--------hHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHH
Q 012448           29 DAAAKKFLDRFP--------LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLA  100 (463)
Q Consensus        29 ~~~~~~~~~~~~--------l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~La  100 (463)
                      -+.++.++....        .|.++.|.++.|  =++++.+-..|...  +..-+..+--....++..-+.++|.+|.+|
T Consensus        31 ~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~d--lelKKlvyLYl~nY--a~~~P~~a~~avnt~~kD~~d~np~iR~lA  106 (734)
T KOG1061|consen   31 KDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRD--LELKKLVYLYLMNY--AKGKPDLAILAVNTFLKDCEDPNPLIRALA  106 (734)
T ss_pred             HHHHHHHHhcCccCcchHhhhHHHHhhcccCC--chHHHHHHHHHHHh--hccCchHHHhhhhhhhccCCCCCHHHHHHH
Confidence            456666666655        467888888876  45666666677776  444344444568899999999999999999


Q ss_pred             HHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhc
Q 012448          101 CKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQ  180 (463)
Q Consensus       101 l~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~  180 (463)
                      ++..+++-  .   .. +.+.     +...+..|+.|.+.-+.+.|.-...++-.-.+  +...+.+.++  .|+.++..
T Consensus       107 lrtm~~l~--v---~~-i~ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~--~~~~~~gl~~--~L~~ll~D  171 (734)
T KOG1061|consen  107 LRTMGCLR--V---DK-ITEY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP--DLVEDSGLVD--ALKDLLSD  171 (734)
T ss_pred             hhceeeEe--e---hH-HHHH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh--hhccccchhH--HHHHHhcC
Confidence            99998852  2   22 3333     45567789999999999999988888876654  4566888888  89988888


Q ss_pred             CCchhHHHHHHHHHHHHhcCHH
Q 012448          181 CSSLGRVRVLSLIVKLFSVSRS  202 (463)
Q Consensus       181 ~~~~vR~Rv~el~v~ia~~S~~  202 (463)
                      .|+.|=......+.+|...+++
T Consensus       172 ~~p~VVAnAlaaL~eI~e~~~~  193 (734)
T KOG1061|consen  172 SNPMVVANALAALSEIHESHPS  193 (734)
T ss_pred             CCchHHHHHHHHHHHHHHhCCC
Confidence            8889999999999999888864

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=93.05  E-value=0.22  Score=34.65  Aligned_cols=38  Identities=24%  Similarity=0.235  Sum_probs=35.2

Q ss_pred             HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhC
Q 012448          118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAG  155 (463)
Q Consensus       118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak  155 (463)
                      -.+.+++.|.+|.++.+|.+++..+.+.|..+|..|++
T Consensus         4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    4 NKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            56788899999999999999999999999999999874

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.80  E-value=4.2  Score=45.78  Aligned_cols=198  Identities=16%  Similarity=0.203  Sum_probs=134.8

Q ss_pred             HHHHhcCChHHHHH-----ccccCCCCcchHHHHHHHHHHHhccccccchhhch---HHHHHHhhcCCCHHHHHHHHHHH
Q 012448           33 KKFLDRFPLSVILN-----TLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHY---MPFVQVGLTADSHSVKRLACKTV  104 (463)
Q Consensus        33 ~~~~~~~~l~~L~~-----~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~---~~~l~~gL~h~~~~Vr~Lal~~l  104 (463)
                      ..++++.++|.|+-     +|-++|  .+.++..-..++.+=++.....+.+..   -+.+..-|+|||.-||=.+++=+
T Consensus        46 ~~mlnGe~~p~Llm~IiRfvlps~~--~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFL  123 (948)
T KOG1058|consen   46 ALMLNGEDLPSLLMTIIRFVLPSRN--HELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFL  123 (948)
T ss_pred             HHHHcCCCchHHHHHHhheeeccCc--hHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhh
Confidence            34567788888774     566666  777888777787774444434555543   67788899999999999999999


Q ss_pred             HHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhh-HhhcCCc
Q 012448          105 TCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGN-LVAQCSS  183 (463)
Q Consensus       105 ~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~-~~~~~~~  183 (463)
                      .++  +.   .+ +.+     .++|.|-.|+-.+..-|.+-|+-++-.|-+...  +.+-|++-+    +.. ++..+|.
T Consensus       124 ckL--kE---~E-Lle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~--~L~pDapeL----i~~fL~~e~Dp  186 (948)
T KOG1058|consen  124 CKL--KE---PE-LLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE--HLIPDAPEL----IESFLLTEQDP  186 (948)
T ss_pred             hhc--Cc---HH-Hhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh--hhcCChHHH----HHHHHHhccCc
Confidence            985  22   33 332     489999999999999999999999988877632  222222211    111 3356788


Q ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhh---cCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHH
Q 012448          184 LGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEG---VSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCS  260 (463)
Q Consensus       184 ~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~e---L~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~  260 (463)
                      ..|+.+   ++.+.-..+|.+        +.++..+   +.+ =+..+|+-.+|+++..+..+-+    .+...++-|++
T Consensus       187 sCkRNA---Fi~L~~~D~ErA--------l~Yl~~~idqi~~-~~~~LqlViVE~Irkv~~~~p~----~~~~~i~~i~~  250 (948)
T KOG1058|consen  187 SCKRNA---FLMLFTTDPERA--------LNYLLSNIDQIPS-FNDSLQLVIVELIRKVCLANPA----EKARYIRCIYN  250 (948)
T ss_pred             hhHHHH---HHHHHhcCHHHH--------HHHHHhhHhhccC-ccHHHHHHHHHHHHHHHhcCHH----HhhHHHHHHHH
Confidence            888875   555666666653        3333434   444 5678899999999999993332    23344566777


Q ss_pred             Hhccc
Q 012448          261 LIGNS  265 (463)
Q Consensus       261 ~i~~~  265 (463)
                      .+...
T Consensus       251 lL~st  255 (948)
T KOG1058|consen  251 LLSST  255 (948)
T ss_pred             HHhcC
Confidence            76654

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.62  E-value=27  Score=41.37  Aligned_cols=348  Identities=18%  Similarity=0.187  Sum_probs=180.9

Q ss_pred             hHHHHHHHHHHHhccc--cccchhhc---hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCC---chhHHHHHHHh-hcc-C
Q 012448           57 LEDTLVVCLERIFKTK--YGASLIPH---YMPFVQVGLTADSHSVKRLACKTVTCLLEDS---DLEASCALQLL-IDY-E  126 (463)
Q Consensus        57 ~~~~~~~vL~~il~~~--~~~~l~~~---~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~---~~~~~~~~~~~-~~~-~  126 (463)
                      ..++++.=|=++|...  +|..+...   ..+-+...+.. .+..|.-.|..+..+++.+   ....+ ..+.+ .++ +
T Consensus       490 ~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~-~~elr~~Ic~sL~~Lv~~n~~~~~a~e-~~e~~s~~Akn  567 (1176)
T KOG1248|consen  490 LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLK-RPELRETICNSLRMLVEQNKPSSDAAE-NKEVLSNDAKN  567 (1176)
T ss_pred             HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhc-chHhHHHHHHHHHHHHHcCCCcchHHH-HHHHHhhhhhH
Confidence            4455666555555444  23333332   24444444443 4499999999999999875   22222 22222 121 2


Q ss_pred             cHHHHHHhhcC------CchHHHHHHHHHHH-HHhCCCCCccccccCCCcchhhHhhHh----h----cCCchhHHHHHH
Q 012448          127 IYPLLLDCLIN------GNEEVATASMDAIK-KLAGFPNGIDIIFPADNKAATDLGNLV----A----QCSSLGRVRVLS  191 (463)
Q Consensus       127 l~~~li~~l~d------~d~~va~~A~~~L~-~lak~~~~l~~l~~~~~~~~~~L~~~~----~----~~~~~vR~Rv~e  191 (463)
                      .+|-+.+.=..      +...+...-+.++. ..-.       +.+.++..  .|.+.+    .    ...+....++++
T Consensus       568 fL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~-------~t~~dv~~--~l~~s~~e~as~~~~s~~~~~~~slLd  638 (1176)
T KOG1248|consen  568 FLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFT-------VTPTDVVG--SLKDSAGELASDLDESVASFKTLSLLD  638 (1176)
T ss_pred             HHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhh-------cccHHHHH--HHHHHHHhHhccchhhhhhHHHHHHHH
Confidence            44444432211      22233333333322 1111       11222322  333221    1    234556788899


Q ss_pred             HHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhh
Q 012448          192 LIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETIL  271 (463)
Q Consensus       192 l~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~  271 (463)
                      +++-++..-++. . +  +++| .+..+..+.++..+|+-+-++|.++...+.|..|..+.      ++.|.+.-.|++-
T Consensus       639 l~~~~a~~~~e~-~-v--s~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~------i~~I~n~L~ds~q  707 (1176)
T KOG1248|consen  639 LLIALAPVQTES-Q-V--SKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQR------IDDIFNSLLDSFQ  707 (1176)
T ss_pred             HHHhhhccccch-h-H--HHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHH------HHHHHHHHHHHHh
Confidence            998888764433 1 1  2455 55666666469999999999999999997777665543      3333333233332


Q ss_pred             hhhhhhHhhhhccccccch----hcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhH
Q 012448          272 RSRAIMISGRLLSKDDSHM----FIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAA  347 (463)
Q Consensus       272 r~~aili~g~i~~f~~~~~----~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~  347 (463)
                      .+...--.+++..-.-+++    +......+.+|..+   + +..+.+..-+..|+++|=.||.   ....+... .+..
T Consensus       708 s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvI---L-~~Ke~n~~aR~~Af~lL~~i~~---i~~~~d~g-~e~~  779 (1176)
T KOG1248|consen  708 SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVI---L-SLKEVNVKARRNAFALLVFIGA---IQSSLDDG-NEPA  779 (1176)
T ss_pred             ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH---H-hcccccHHHHhhHHHHHHHHHH---HHhhhccc-ccch
Confidence            1111111333332111111    11011233333332   2 3378889999999999999995   22222211 1112


Q ss_pred             HHHHHHHHhhccc-----hh--hHhHHhhhHHHhcCCCchhhhhhhh-hHHHHHHHHHHHHHhhCCCCChhH---HHHHH
Q 012448          348 RHVIDAAFDRQGH-----GK--QLAALHGLANIAGKTRSEDKIILNA-DAEESLRHLIYEVASRSSKLTPSG---LFLSV  416 (463)
Q Consensus       348 ~~~l~~~~~~~~~-----~~--k~r~L~al~~Il~~~r~~~~~il~~-~~e~~l~~~~ye~~~~~~~~~p~~---~~~~~  416 (463)
                      ...++.+..-++-     ..  ..+.|-+++.|+...    ..++++ -.+. +..++ ..|-.+-+..-..   -++.+
T Consensus       780 ~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~----~~~ld~~~l~~-li~~V-~~~L~s~sreI~kaAI~fikv  853 (1176)
T KOG1248|consen  780 SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF----KNILDDETLEK-LISMV-CLYLASNSREIAKAAIGFIKV  853 (1176)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH----hccccHHHHHH-HHHHH-HHHHhcCCHHHHHHHHHHHHH
Confidence            4444444444442     22  333388899988843    223333 3333 66666 6665532222221   15556


Q ss_pred             h-cCCHHHHHHHHH--HHHHhhcCchhHH
Q 012448          417 L-QQAAEIRLAGYR--MITGLVARPWCLM  442 (463)
Q Consensus       417 ~-qpF~elr~A~~~--~l~~l~~~~Wg~~  442 (463)
                      + +=|||...+.+.  +|..+..  |-.+
T Consensus       854 lv~~~pe~~l~~~~~~LL~sll~--ls~d  880 (1176)
T KOG1248|consen  854 LVYKFPEECLSPHLEELLPSLLA--LSHD  880 (1176)
T ss_pred             HHHcCCHHHHhhhHHHHHHHHHH--HHHh
Confidence            6 889999999999  8888877  7654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=92.60  E-value=3  Score=46.06  Aligned_cols=183  Identities=13%  Similarity=0.073  Sum_probs=137.0

Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHH-hCCCCC
Q 012448           81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKL-AGFPNG  159 (463)
Q Consensus        81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~l-ak~~~~  159 (463)
                      ..+.+....-|.|..++..+|--+....+..   .. +...+.+.++...++..+-||++.|..++..+|-++ -++++-
T Consensus       378 t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV---~a-L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~  453 (678)
T KOG1293|consen  378 TESHLMCLPPIKDHDFVAAALLCLKSFSRSV---SA-LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNL  453 (678)
T ss_pred             HHHHHccccccccHHHHHHHHHHHHHHHHHH---HH-HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccH
Confidence            3566666778889999998887776655544   33 444567778888999999999999999999999888 444432


Q ss_pred             ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHH
Q 012448          160 IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYEL  239 (463)
Q Consensus       160 l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eL  239 (463)
                      -......+.++  .+.......+..+|.-..-++-++.=-+.+....---+.++-..+.++-+-+|.=||--|+.+++.+
T Consensus       454 kskfl~~ngId--~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl  531 (678)
T KOG1293|consen  454 KSKFLRNNGID--ILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL  531 (678)
T ss_pred             HHHHHHcCcHH--HHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            24555667777  7777888899999998888888888778777777666778877777765548999999999999999


Q ss_pred             Hh-hHHHHHHHHhc--chHHHHHHHhcccccch
Q 012448          240 AE-IQHSAEFLSRT--TLLQLLCSLIGNSATET  269 (463)
Q Consensus       240 a~-t~~g~~~L~~~--gi~~~L~~~i~~~~~dp  269 (463)
                      .- +.....|+.+.  .+++++.-...-+...|
T Consensus       532 ~c~~~~svdfll~~~~~~ld~i~l~lk~a~~~p  564 (678)
T KOG1293|consen  532 TCNSRKSVDFLLEKFKDVLDKIDLQLKIAIGSP  564 (678)
T ss_pred             hcCcHHHHHHHHHhhhHHHHHHHHHHhhccCCc
Confidence            87 77888888875  34444444433233444

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=92.39  E-value=13  Score=39.40  Aligned_cols=177  Identities=14%  Similarity=0.068  Sum_probs=107.4

Q ss_pred             cchHHHHHHHHHHHhccccccchhhchHHHHHHhh-----cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHH
Q 012448           55 PGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGL-----TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYP  129 (463)
Q Consensus        55 ~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL-----~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~  129 (463)
                      +..+..++.+|..+......+.....+.+.+..-+     ....+..=+...|-...++-+.   .. ...     .++.
T Consensus       204 ~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~---~~-~~~-----~~~~  274 (415)
T PF12460_consen  204 EFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG---HP-LAT-----ELLD  274 (415)
T ss_pred             hHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC---Cc-hHH-----HHHH
Confidence            45555666666666655434443333444333333     2223333344445555555444   11 111     3455


Q ss_pred             HHHHhhcCCchHHHHHHHHHHHHHhCCCCCc---------cccccCCCcc--hhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448          130 LLLDCLINGNEEVATASMDAIKKLAGFPNGI---------DIIFPADNKA--ATDLGNLVAQCSSLGRVRVLSLIVKLFS  198 (463)
Q Consensus       130 ~li~~l~d~d~~va~~A~~~L~~lak~~~~l---------~~l~~~~~~~--~~~L~~~~~~~~~~vR~Rv~el~v~ia~  198 (463)
                      .++..+.++  +++..|++.+.-+....+..         +.++...++.  .-.|.+.....++..|...+-.++.|-+
T Consensus       275 ~L~~lL~~~--~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~  352 (415)
T PF12460_consen  275 KLLELLSSP--ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLK  352 (415)
T ss_pred             HHHHHhCCh--hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHh
Confidence            667778774  47888999998887773321         2233333322  0033334445566789999999999999


Q ss_pred             cCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhH
Q 012448          199 VSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQ  243 (463)
Q Consensus       199 ~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~  243 (463)
                      +-|...=.-.=..++|.+++.|+- +|.-++.++++++..+....
T Consensus       353 ~vP~~vl~~~l~~LlPLLlqsL~~-~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  353 NVPKSVLLPELPTLLPLLLQSLSL-PDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHcC
Confidence            877554333445799999999988 99999999999999998843

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=92.30  E-value=2.4  Score=46.34  Aligned_cols=275  Identities=12%  Similarity=0.041  Sum_probs=142.3

Q ss_pred             cCChHHHHHccccC--CCCcc-hHHHHHHHHHHHhccccccchhhch---HHHHHHh-h-cCCCHHHHHHHHHHHHHHHh
Q 012448           38 RFPLSVILNTLQTK--PDVPG-LEDTLVVCLERIFKTKYGASLIPHY---MPFVQVG-L-TADSHSVKRLACKTVTCLLE  109 (463)
Q Consensus        38 ~~~l~~L~~~L~~~--~~~~~-~~~~~~~vL~~il~~~~~~~l~~~~---~~~l~~g-L-~h~~~~Vr~Lal~~l~~i~~  109 (463)
                      +--+|.++.-+-.+  ++.|. .+.....++.-+.....|..+.+++   .-.++.| + ++++..||-.+++++..-+.
T Consensus       128 ~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~  207 (858)
T COG5215         128 NSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM  207 (858)
T ss_pred             cccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence            44455666555432  22222 1222222555555555665555443   3334443 4 35689999999999877221


Q ss_pred             CCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC-CCccccccCCCcchhhHhhHhhcCCchhHHH
Q 012448          110 DSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP-NGIDIIFPADNKAATDLGNLVAQCSSLGRVR  188 (463)
Q Consensus       110 ~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~-~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~R  188 (463)
                      -.   .++...--..+=++..++..-+.+|.++-.+|...|-+|-.-. +-++. +..+.+- ....+...++|++|+.+
T Consensus       208 fv---~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~-ymE~aL~-alt~~~mks~nd~va~q  282 (858)
T COG5215         208 FV---QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQS-YMENALA-ALTGRFMKSQNDEVAIQ  282 (858)
T ss_pred             HH---HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHhcCcchHHHHH
Confidence            00   0001111112236666778889999999999999988874221 11111 1111111 13334566899999999


Q ss_pred             HHHHHHHHHhcCHHHH----------------HHHHhhccHHHHHhhcCC------CCcHHHHH---hHHHHHHHHHhhH
Q 012448          189 VLSLIVKLFSVSRSVA----------------SVIFKANLLTLLEEGVSK------KNDTLETL---SILELLYELAEIQ  243 (463)
Q Consensus       189 v~el~v~ia~~S~~~~----------------~~v~~sgl~~~ll~eL~~------~~DvLv~l---nalell~eLa~t~  243 (463)
                      ..|.-..|+..--|..                ....-..++|.+++.|.+      .||==+.+   +|++++.++....
T Consensus       283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~  362 (858)
T COG5215         283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK  362 (858)
T ss_pred             HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH
Confidence            9998877775432221                111123577888777654      14444444   5566666665421


Q ss_pred             HHHHHHHhcchHHHHHHHhcccc-cchhhhhhhhhHhhhhccccccchhcchh-hhhhhHHHHHHHhccccCCChhhhhH
Q 012448          244 HSAEFLSRTTLLQLLCSLIGNSA-TETILRSRAIMISGRLLSKDDSHMFIDES-SAKTVISAIDGRLGFLQSQDSDECES  321 (463)
Q Consensus       244 ~g~~~L~~~gi~~~L~~~i~~~~-~dpl~r~~aili~g~i~~f~~~~~~~~~~-~~k~~p~~l~~~f~~~~~~d~~~~~~  321 (463)
                          .+..  +...+-..|.+.+ .+.-        .+-|.+ |.++--++.- ..+.+|+.+..+.++...+---.+..
T Consensus       363 ----i~~p--Vl~FvEqni~~~~w~nre--------aavmAf-GSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~t  427 (858)
T COG5215         363 ----IMRP--VLGFVEQNIRSESWANRE--------AAVMAF-GSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKST  427 (858)
T ss_pred             ----hHHH--HHHHHHHhccCchhhhHH--------HHHHHh-hhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhH
Confidence                1111  3333323333211 2221        233333 3333112111 24445666666654444444567899


Q ss_pred             HHHHHHhhcCC
Q 012448          322 ALEALGQIGSS  332 (463)
Q Consensus       322 A~dtlG~Igss  332 (463)
                      +.|++|.|+.+
T Consensus       428 tAwc~g~iad~  438 (858)
T COG5215         428 TAWCFGAIADH  438 (858)
T ss_pred             HHHHHHHHHHH
Confidence            99999999854

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=92.26  E-value=0.17  Score=33.28  Aligned_cols=30  Identities=27%  Similarity=0.454  Sum_probs=26.7

Q ss_pred             cHHHHHHhhcCCchHHHHHHHHHHHHHhCC
Q 012448          127 IYPLLLDCLINGNEEVATASMDAIKKLAGF  156 (463)
Q Consensus       127 l~~~li~~l~d~d~~va~~A~~~L~~lak~  156 (463)
                      ++|.++.+++|++..|...|+.+|.+|+++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            578999999999999999999999999865

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=92.02  E-value=19  Score=39.65  Aligned_cols=132  Identities=15%  Similarity=0.144  Sum_probs=88.3

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-ccc
Q 012448           85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DII  163 (463)
Q Consensus        85 l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l  163 (463)
                      +..|-+. ++.+|+|++.-|.+-..+-   +. +.+     ..+-.+++.+-|+|..|-..|++.|..++|..+.. ..|
T Consensus        28 il~~~kg-~~k~K~Laaq~I~kffk~F---P~-l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv   97 (556)
T PF05918_consen   28 ILDGVKG-SPKEKRLAAQFIPKFFKHF---PD-LQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV   97 (556)
T ss_dssp             HHHGGGS--HHHHHHHHHHHHHHHCC----GG-GHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH
T ss_pred             HHHHccC-CHHHHHHHHHHHHHHHhhC---hh-hHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH
Confidence            3445554 7999999999999999877   44 433     35566788899999999999999999999987632 332


Q ss_pred             ccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHH
Q 012448          164 FPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYEL  239 (463)
Q Consensus       164 ~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eL  239 (463)
                      .     +  .|.+++...+....--|-..++++.+..+...    =+|+|+.++.- .+ .|..+|-.++..|.+=
T Consensus        98 a-----D--vL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~t----L~~lf~~i~~~-~~-~de~~Re~~lkFl~~k  160 (556)
T PF05918_consen   98 A-----D--VLVQLLQTDDPVELDAVKNSLMSLLKQDPKGT----LTGLFSQIESS-KS-GDEQVRERALKFLREK  160 (556)
T ss_dssp             H-----H--HHHHHTT---HHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHH----H-S-HHHHHHHHHHHHHH
T ss_pred             H-----H--HHHHHHhcccHHHHHHHHHHHHHHHhcCcHHH----HHHHHHHHHhc-cc-CchHHHHHHHHHHHHH
Confidence            2     3  56656666677888888999999999887552    24788887743 24 6778999999988653

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=91.97  E-value=4.7  Score=41.38  Aligned_cols=163  Identities=15%  Similarity=0.166  Sum_probs=116.8

Q ss_pred             ChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccc-cccchhhch-------HHHHHHhhcCCC------
Q 012448           28 NDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTK-YGASLIPHY-------MPFVQVGLTADS------   93 (463)
Q Consensus        28 s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~-~~~~l~~~~-------~~~l~~gL~h~~------   93 (463)
                      -...++.++++. +..|+.+|+...  +.....+--.|..+  .. .++..+..+       ...+.+-+++..      
T Consensus        46 g~~l~~~iL~~~-~k~lyr~L~~~~--~~~~~~~LrLL~~i--v~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~  120 (330)
T PF11707_consen   46 GLELIRSILQNH-LKLLYRSLSSSK--PSLTNPALRLLTAI--VSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKD  120 (330)
T ss_pred             HHHHHHHHHHHH-HHHHHHHhCcCc--HHHHHHHHHHHHHH--HccCCHHHHHHHHHhcCCchhhHHHHhcccccccccc
Confidence            456689999887 999999999865  33334333366666  33 444444333       223333332221      


Q ss_pred             -------HHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHH-HhCCC---CCcc-
Q 012448           94 -------HSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKK-LAGFP---NGID-  161 (463)
Q Consensus        94 -------~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~-lak~~---~~l~-  161 (463)
                             +.||...++=+...+.+.+. .. ..+++.+.+++..+..-|.+.+.++-...+++|.+ +.+.+   +..+ 
T Consensus       121 ~~~~~~~~siR~~fI~F~Lsfl~~~~~-~~-~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~  198 (330)
T PF11707_consen  121 SESSKSKPSIRTNFIRFWLSFLSSGDP-EL-KRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKC  198 (330)
T ss_pred             ccccccCcCHHHHHHHHHHHHHccCCH-HH-HHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhh
Confidence                   39999999999999987632 44 67799999999999999999999999999999884 55444   2332 


Q ss_pred             ccccCCCcchhhHhhHhhcCCc----hhHHHHHHHHHHHHhc
Q 012448          162 IIFPADNKAATDLGNLVAQCSS----LGRVRVLSLIVKLFSV  199 (463)
Q Consensus       162 ~l~~~~~~~~~~L~~~~~~~~~----~vR~Rv~el~v~ia~~  199 (463)
                      .+|++.++.  .|..+....++    .++--|++++..++..
T Consensus       199 ~~fn~~~L~--~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  199 KLFNEWTLS--QLASLYSRDGEDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             hhcCHHHHH--HHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence            677777777  77776677777    8999999999999954

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=91.86  E-value=0.55  Score=32.61  Aligned_cols=40  Identities=20%  Similarity=0.013  Sum_probs=36.9

Q ss_pred             CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHH
Q 012448          200 SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELA  240 (463)
Q Consensus       200 S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa  240 (463)
                      |++.-..+++.|.++.++..|++ +|.-++.+|+-.|..|+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKS-PDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTS-SSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcC-CCHHHHHHHHHHHHHHh
Confidence            56778899999999999999998 99999999999999886

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=91.65  E-value=3  Score=50.05  Aligned_cols=164  Identities=11%  Similarity=0.140  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC
Q 012448           58 EDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN  137 (463)
Q Consensus        58 ~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d  137 (463)
                      .+.++.+...+.....-......|...|..+|.+|.+.||.=|++.+..+++-+   ..    .+.++++-..|...+.|
T Consensus       794 ~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~D---p~----vL~~~dvq~~Vh~R~~D  866 (1692)
T KOG1020|consen  794 DDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEAD---PS----VLSRPDVQEAVHGRLND  866 (1692)
T ss_pred             chhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcC---hH----hhcCHHHHHHHHHhhcc
Confidence            345555555554444444455568999999999999999999999999999876   32    45666777888899999


Q ss_pred             CchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHH
Q 012448          138 GNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLL  216 (463)
Q Consensus       138 ~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~l  216 (463)
                      .-.+|..+|.+.+.+.--..+.+ ...     .+  .+.+.+...+-.||-||.-++-+|+-..|+.-..+   .+.-++
T Consensus       867 ssasVREAaldLvGrfvl~~~e~~~qy-----Y~--~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~---~~cakm  936 (1692)
T KOG1020|consen  867 SSASVREAALDLVGRFVLSIPELIFQY-----YD--QIIERILDTGVSVRKRVIKILRDICEETPDFSKIV---DMCAKM  936 (1692)
T ss_pred             chhHHHHHHHHHHhhhhhccHHHHHHH-----HH--HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH---HHHHHH
Confidence            99999999999998763222211 212     22  55567778889999999999999998877654433   466677


Q ss_pred             HhhcCCCCcHHHHHhHHHHHHHH
Q 012448          217 EEGVSKKNDTLETLSILELLYEL  239 (463)
Q Consensus       217 l~eL~~~~DvLv~lnalell~eL  239 (463)
                      +....| +--=++.=+.|.+.++
T Consensus       937 lrRv~D-EEg~I~kLv~etf~kl  958 (1692)
T KOG1020|consen  937 LRRVND-EEGNIKKLVRETFLKL  958 (1692)
T ss_pred             HHHhcc-chhHHHHHHHHHHHHH
Confidence            777766 3222444455555443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=91.45  E-value=9.4  Score=45.16  Aligned_cols=225  Identities=16%  Similarity=0.222  Sum_probs=131.0

Q ss_pred             HHHHHHhhcCC-CHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC--
Q 012448           82 MPFVQVGLTAD-SHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN--  158 (463)
Q Consensus        82 ~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~--  158 (463)
                      ...+-.|+.|= ...-|.-|+.-+..+....+++..      .| .++|.++.|+.|++..|-..|+.+|.++.....  
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~------LD-RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~  496 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK------LD-RVLPYFVHLLMDSEADVRATALETLTELLALVRDI  496 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH------Hh-hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC
Confidence            44444444443 334455555555555544432222      22 589999999999999999999999988854432  


Q ss_pred             --CccccccCCCcchhhHhhHhhc-CCchhHHHHHHHHHHHHhcCHHHHHHHH---hhccH-------------------
Q 012448          159 --GIDIIFPADNKAATDLGNLVAQ-CSSLGRVRVLSLIVKLFSVSRSVASVIF---KANLL-------------------  213 (463)
Q Consensus       159 --~l~~l~~~~~~~~~~L~~~~~~-~~~~vR~Rv~el~v~ia~~S~~~~~~v~---~sgl~-------------------  213 (463)
                        .=..||..=.++  .|+.++.. ....+|.-.-+++.++|+.-..-++...   ..|.+                   
T Consensus       497 ~~~daniF~eYlfP--~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~  574 (1431)
T KOG1240|consen  497 PPSDANIFPEYLFP--HLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQA  574 (1431)
T ss_pred             CcccchhhHhhhhh--hhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHH
Confidence              224677777788  88855544 4566677667788888876332222211   11111                   


Q ss_pred             ------HHHHhhcCCCCcHHHHHhHHHHHHHHHh--hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccc
Q 012448          214 ------TLLEEGVSKKNDTLETLSILELLYELAE--IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSK  285 (463)
Q Consensus       214 ------~~ll~eL~~~~DvLv~lnalell~eLa~--t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f  285 (463)
                            .....-|.| ++..||..-+|=|.+|+.  .+.++    +-=++..|+.++++-  |+-.|      ..|+-.-
T Consensus       575 L~~~V~~~v~sLlsd-~~~~Vkr~Lle~i~~LC~FFGk~ks----ND~iLshLiTfLNDk--Dw~LR------~aFfdsI  641 (1431)
T KOG1240|consen  575 LHHTVEQMVSSLLSD-SPPIVKRALLESIIPLCVFFGKEKS----NDVILSHLITFLNDK--DWRLR------GAFFDSI  641 (1431)
T ss_pred             HHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHhhhccc----ccchHHHHHHHhcCc--cHHHH------HHHHhhc
Confidence                  122223556 677777777777777766  33222    223566777777763  66544      3333221


Q ss_pred             cccchhcc-hhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448          286 DDSHMFID-ESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS  331 (463)
Q Consensus       286 ~~~~~~~~-~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs  331 (463)
                      .++--|++ ++.+.+..+.++.   -+..+++..+..|+.+|..+..
T Consensus       642 ~gvsi~VG~rs~seyllPLl~Q---~ltD~EE~Viv~aL~~ls~Lik  685 (1431)
T KOG1240|consen  642 VGVSIFVGWRSVSEYLLPLLQQ---GLTDGEEAVIVSALGSLSILIK  685 (1431)
T ss_pred             cceEEEEeeeeHHHHHHHHHHH---hccCcchhhHHHHHHHHHHHHH
Confidence            12222332 2234434444443   3577888888888888877765

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=91.27  E-value=0.46  Score=44.73  Aligned_cols=73  Identities=15%  Similarity=0.207  Sum_probs=62.3

Q ss_pred             chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhC
Q 012448           76 SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAG  155 (463)
Q Consensus        76 ~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak  155 (463)
                      .+.|.|.+.+.....++++.||.+|+.-+.-+++.+--.+.         ..+|.+|....||+..++..|...++.+.+
T Consensus         4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~---------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e   74 (187)
T PF12830_consen    4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK---------QCVPTLIALETSPNPSIRSRAYQLLKELHE   74 (187)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH---------HHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999998876521122         489999999999999999999999999954


Q ss_pred             CC
Q 012448          156 FP  157 (463)
Q Consensus       156 ~~  157 (463)
                      -.
T Consensus        75 K~   76 (187)
T PF12830_consen   75 KH   76 (187)
T ss_pred             Hh
Confidence            43

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=91.17  E-value=5.4  Score=40.18  Aligned_cols=194  Identities=18%  Similarity=0.157  Sum_probs=125.6

Q ss_pred             HHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhC
Q 012448           31 AAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLED  110 (463)
Q Consensus        31 ~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~  110 (463)
                      ..+.+++++.+|.    +++.+  +..++.+..||.-+  .+-....+.++...+..+++..++.||..+++.+..++-.
T Consensus        23 ~l~~ll~~lI~P~----v~~~~--~~vR~~al~cLGl~--~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~   94 (298)
T PF12719_consen   23 SLESLLDSLILPA----VQSSD--PAVRELALKCLGLC--CLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLT   94 (298)
T ss_pred             hHHHHHHHHHHHH----hcCCC--HHHHHHHHHHHHHH--HHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3356666666654    44444  68889999999988  7777788889999999999999999999999999999863


Q ss_pred             CchhHHHHHHHh-------hccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcccccc-CCCcchhhHhhHhh---
Q 012448          111 SDLEASCALQLL-------IDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFP-ADNKAATDLGNLVA---  179 (463)
Q Consensus       111 ~~~~~~~~~~~~-------~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~-~~~~~~~~L~~~~~---  179 (463)
                      -+  .. .....       ....++..+...+.+.+.++...|+..+.++.-+.    .+.+ +.++.  .|--.--   
T Consensus        95 ~g--~~-~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~----~i~~~~~vL~--~Lll~yF~p~  165 (298)
T PF12719_consen   95 HG--ID-IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG----RISDPPKVLS--RLLLLYFNPS  165 (298)
T ss_pred             cC--ch-hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC----CCCcHHHHHH--HHHHHHcCcc
Confidence            32  22 22222       23468888889999999999999999999986443    2444 45554  3321111   


Q ss_pred             cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCC-C--cHHHHHhHHHHHHHHHh
Q 012448          180 QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKK-N--DTLETLSILELLYELAE  241 (463)
Q Consensus       180 ~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~-~--DvLv~lnalell~eLa~  241 (463)
                      ..+..-=++++..+-.....|...-+.+....+++.+-.-.+.. +  +.+..++.-.+...++.
T Consensus       166 t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~  230 (298)
T PF12719_consen  166 TEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVD  230 (298)
T ss_pred             cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHH
Confidence            11222234566666666666665556666666666655544441 1  34444444444444444

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=90.91  E-value=0.73  Score=41.54  Aligned_cols=106  Identities=12%  Similarity=0.104  Sum_probs=80.2

Q ss_pred             hHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---chhh-chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHH
Q 012448           41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---SLIP-HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS  116 (463)
Q Consensus        41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~l~~-~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~  116 (463)
                      |..|++-.++.. +.+-++++.+=|...  +-+|-   .+.+ ++.+.++.+|+++|..+++.++-.++.+--.    ..
T Consensus        18 lq~LV~efq~tt-~~eakeqv~ANLANF--AYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d----~~   90 (173)
T KOG4646|consen   18 LQHLVDEFQTTT-NIEAKEQVTANLANF--AYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD----KT   90 (173)
T ss_pred             HHHHHHHHHHhc-cHHHHHHHHHHHHhh--ccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC----hH
Confidence            345555555543 256677888777766  55553   2322 5799999999999999999999999886432    23


Q ss_pred             HHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 012448          117 CALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLA  154 (463)
Q Consensus       117 ~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~la  154 (463)
                       -+..+..++=+|++|.|+.+|...+-..|+-++.-+.
T Consensus        91 -n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~  127 (173)
T KOG4646|consen   91 -NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLE  127 (173)
T ss_pred             -HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhc
Confidence             5677788899999999999999999999999988775

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.48  E-value=37  Score=38.79  Aligned_cols=402  Identities=14%  Similarity=0.148  Sum_probs=235.1

Q ss_pred             HHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc--------------hhh------chHHHHHHhhcCC
Q 012448           33 KKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS--------------LIP------HYMPFVQVGLTAD   92 (463)
Q Consensus        33 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~--------------l~~------~~~~~l~~gL~h~   92 (463)
                      |.-|....+++|++.|++..++++..+-+-+.+-.++..-+.++              ++.      .....+...++|+
T Consensus        55 R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~  134 (970)
T KOG0946|consen   55 REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF  134 (970)
T ss_pred             HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh
Confidence            44566677889999999876666666655555555544332111              111      1367788899999


Q ss_pred             CHHHHHHHHHHHHHHHhCCchhHHHHHH-HhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccc-cCCCcc
Q 012448           93 SHSVKRLACKTVTCLLEDSDLEASCALQ-LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIF-PADNKA  170 (463)
Q Consensus        93 ~~~Vr~Lal~~l~~i~~~~~~~~~~~~~-~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~-~~~~~~  170 (463)
                      |=.||..++.-+..++.+-..  . +.+ +++-|--+.-++..|.|...-+...|+-.|..+.+..+.++.++ =.+.+.
T Consensus       135 DF~VR~~aIqLlsalls~r~~--e-~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFe  211 (970)
T KOG0946|consen  135 DFHVRLYAIQLLSALLSCRPT--E-LQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFE  211 (970)
T ss_pred             chhhhhHHHHHHHHHHhcCCH--H-HHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHH
Confidence            999999999999999987732  2 444 55777788889999999999999999999999999998885332 345554


Q ss_pred             hhhHhhHhhcC----CchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhc---CCCCc------HHHHH---hHHH
Q 012448          171 ATDLGNLVAQC----SSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGV---SKKND------TLETL---SILE  234 (463)
Q Consensus       171 ~~~L~~~~~~~----~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL---~~~~D------vLv~l---nale  234 (463)
                        .|-.++...    ..+|---.+-++-++-|-....-++..|.+.++++..-|   .-.+|      .----   -++.
T Consensus       212 --rLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lq  289 (970)
T KOG0946|consen  212 --RLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQ  289 (970)
T ss_pred             --HHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHH
Confidence              444344322    336777777788899999888889999999999988432   22122      22222   3455


Q ss_pred             HHHHHHh------hHHHH-HHHHhcchHHHHHHHhcccccchh-hhhhhhhHhhhhccccccc---hh--cchhhhh-hh
Q 012448          235 LLYELAE------IQHSA-EFLSRTTLLQLLCSLIGNSATETI-LRSRAIMISGRLLSKDDSH---MF--IDESSAK-TV  300 (463)
Q Consensus       235 ll~eLa~------t~~g~-~~L~~~gi~~~L~~~i~~~~~dpl-~r~~aili~g~i~~f~~~~---~~--~~~~~~k-~~  300 (463)
                      +++-++.      ..|-+ +-|.+.++++.|+..+-... =|. +++-++....-+.- |+-.   .|  ++-|-.+ .-
T Consensus       290 ivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~-vp~dIltesiitvAevVR-gn~~nQ~~F~~v~~p~~~~Pr  367 (970)
T KOG0946|consen  290 IVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG-VPADILTESIITVAEVVR-GNARNQDEFADVTAPSIPNPR  367 (970)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC-CcHhHHHHHHHHHHHHHH-hchHHHHHHhhccCCCCCCCc
Confidence            5666654      23444 68889999999999887654 332 34445555444432 1110   11  1011111 12


Q ss_pred             HHHHHHHhccccC-CChhhhhHHHHHHHhhcC-CHHHHHHHhhcCchhHHHHHHHHHhhccchh--------hHhHHhhh
Q 012448          301 ISAIDGRLGFLQS-QDSDECESALEALGQIGS-SIQGATLLLLCLPPAARHVIDAAFDRQGHGK--------QLAALHGL  370 (463)
Q Consensus       301 p~~l~~~f~~~~~-~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~--------k~r~L~al  370 (463)
                      |..+--+..|+.+ +-...+.+.+-.+-+.=. +.+|..-+.+       ..+..+.+..+++-        -+-..+++
T Consensus       368 ~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~-------tllp~~~nst~Nsl~ag~l~~~~l~s~d~~  440 (970)
T KOG0946|consen  368 PSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLK-------TLLPSSTNSTSNSLSAGQLLLVGLSSTDSL  440 (970)
T ss_pred             cchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHH-------HHhhhhccccccchhhhhHHHHhhccchHH
Confidence            2222212233333 445666666666655444 6667543332       22222222222111        11223444


Q ss_pred             HHHhcCCC-----chhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-------cCCHHHHHHHHHHHH-HhhcC
Q 012448          371 ANIAGKTR-----SEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-------QQAAEIRLAGYRMIT-GLVAR  437 (463)
Q Consensus       371 ~~Il~~~r-----~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-------qpF~elr~A~~~~l~-~l~~~  437 (463)
                      .+-|+..-     .++    +...|+ |+++.   .+-..+.+|.+++..+|       .-=+.-|..=|-+|- -+...
T Consensus       441 ~nwFt~v~lmh~l~dn----~~~kEe-LlrV~---l~~~~gn~p~tlL~~~ct~~~~~~t~r~qt~vglLmlL~~WL~~c  512 (970)
T KOG0946|consen  441 DNWFTAVILMHLLQDN----DQLKEE-LLRVP---LAVDTGNDPDTLLFQQCTNLKLQGTSRHQTRVGLLMLLITWLYGC  512 (970)
T ss_pred             HHHHHHHHHHHHHHHh----HHHHHH-HHhhh---hcccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCC
Confidence            44443110     010    223444 65555   33445566766554422       112333333333333 34455


Q ss_pred             chhHHHhhhccchhHhhcC
Q 012448          438 PWCLMELCSKQEIINTVTD  456 (463)
Q Consensus       438 ~Wg~~~i~~~~gfie~lld  456 (463)
                      |=.+..+.+..+.+-|++.
T Consensus       513 p~AV~dFLs~~s~iq~Ltt  531 (970)
T KOG0946|consen  513 PDAVKDFLSESSIIQYLTT  531 (970)
T ss_pred             cHHHHHHHccccHHHHHHH
Confidence            7789999999999999874

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=90.32  E-value=2  Score=46.77  Aligned_cols=186  Identities=14%  Similarity=0.060  Sum_probs=117.6

Q ss_pred             CChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHH-------HhhcCCCHHHHHHHHHHHHHHHhCC
Q 012448           39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQ-------VGLTADSHSVKRLACKTVTCLLEDS  111 (463)
Q Consensus        39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~-------~gL~h~~~~Vr~Lal~~l~~i~~~~  111 (463)
                      ..+++++-+-.+.+  ....+.+...|+|+-.......+.+++.....       .+-..-++.+|.-.+.-+.|-..  
T Consensus       237 ~~~~~~liAsad~~--~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~--  312 (501)
T PF13001_consen  237 ERFPPLLIASADSN--SSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI--  312 (501)
T ss_pred             hHHhheeeEEeCCc--chHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH--
Confidence            34444444444433  45666777799999655444445444433333       23335688999888888887221  


Q ss_pred             chhHHHHHHHhhccCcHHHHHHhhcCC--chHHHHHHHHHH---HHHhCCCC-CccccccCCCcchhhHhhHh-------
Q 012448          112 DLEASCALQLLIDYEIYPLLLDCLING--NEEVATASMDAI---KKLAGFPN-GIDIIFPADNKAATDLGNLV-------  178 (463)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~~li~~l~d~--d~~va~~A~~~L---~~lak~~~-~l~~l~~~~~~~~~~L~~~~-------  178 (463)
                              .+-.-+.++..+-.|+..+  ...+...++..+   ....++-+ .+-..+.+....  .+-+.+       
T Consensus       313 --------Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~--~g~p~~~~~~~~~  382 (501)
T PF13001_consen  313 --------AATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILS--QGWPLIQDSSSQS  382 (501)
T ss_pred             --------HHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHh--cCccccccccccC
Confidence                    1112235666666788887  566777777777   44444432 110011111111  111122       


Q ss_pred             -hcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448          179 -AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE  241 (463)
Q Consensus       179 -~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~  241 (463)
                       ...+...|.+.|+.+..|++..+..+.  .+-+++.++...|++ ++.=++.+.-|.|..|+.
T Consensus       383 ~~~~~~~lR~~aYe~lG~L~~~~p~l~~--~d~~li~~LF~sL~~-~~~evr~sIqeALssl~~  443 (501)
T PF13001_consen  383 NSSEDIELRSLAYETLGLLAKRAPSLFS--KDLSLIEFLFDSLED-ESPEVRVSIQEALSSLAP  443 (501)
T ss_pred             CCcccHHHHHHHHHHHHHHHccCccccc--ccHHHHHHHHHHhhC-cchHHHHHHHHHHHHHHH
Confidence             246788999999999999999998873  234788999999988 899999999999999988

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF05536 Neurochondrin: Neurochondrin

Probab=90.30  E-value=4.7  Score=44.39  Aligned_cols=189  Identities=16%  Similarity=0.235  Sum_probs=119.2

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc-----hhhch-HHHHHHhhcC-------CCHHHHHHHHHHHHH
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS-----LIPHY-MPFVQVGLTA-------DSHSVKRLACKTVTC  106 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-----l~~~~-~~~l~~gL~h-------~~~~Vr~Lal~~l~~  106 (463)
                      .+......|+.++|+  .+=..-..+.+++++.+-..     +...+ ..|+.+-|..       +...-+.|++.-+..
T Consensus         6 ~l~~c~~lL~~~~D~--~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~   83 (543)
T PF05536_consen    6 SLEKCLSLLKSADDT--ERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA   83 (543)
T ss_pred             HHHHHHHHhccCCcH--HHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence            355666677766532  12222226777766443222     12222 6777787777       667788899888887


Q ss_pred             HHhCCchhHHHHHHHhhccCcHHHHHHhhcCCch-HHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchh
Q 012448          107 LLEDSDLEASCALQLLIDYEIYPLLLDCLINGNE-EVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLG  185 (463)
Q Consensus       107 i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~-~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~v  185 (463)
                      .....    . ++.--.=-+-+|.++.++...+. ++...+...|..++.+++|.+.+...+.++  .|-+.+.+ ++..
T Consensus        84 f~~~~----~-~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~--~L~ei~~~-~~~~  155 (543)
T PF05536_consen   84 FCRDP----E-LASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVP--ALCEIIPN-QSFQ  155 (543)
T ss_pred             HcCCh----h-hhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHH--HHHHHHHh-Ccch
Confidence            65522    2 22111111468999999988887 999999999999999999999999999998  88866554 5566


Q ss_pred             HHHHHHHHHHHHhcCH-HHHH----HHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448          186 RVRVLSLIVKLFSVSR-SVAS----VIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE  241 (463)
Q Consensus       186 R~Rv~el~v~ia~~S~-~~~~----~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~  241 (463)
                      +=.++.++..+..... +..+    .+.  .+++.+-..+.. ..--.+...+++|..+-.
T Consensus       156 ~E~Al~lL~~Lls~~~~~~~~~~~~~l~--~il~~La~~fs~-~~~~~kfell~~L~~~L~  213 (543)
T PF05536_consen  156 MEIALNLLLNLLSRLGQKSWAEDSQLLH--SILPSLARDFSS-FHGEDKFELLEFLSAFLP  213 (543)
T ss_pred             HHHHHHHHHHHHHhcchhhhhhhHHHHH--HHHHHHHHHHHh-hccchHHHHHHHHHHhcC
Confidence            6666677776654433 1111    111  234444444443 333456777888877665

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=90.21  E-value=14  Score=42.28  Aligned_cols=152  Identities=16%  Similarity=0.138  Sum_probs=94.3

Q ss_pred             chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhC
Q 012448           76 SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAG  155 (463)
Q Consensus        76 ~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak  155 (463)
                      .+-.+.++....-=++.+|.||.++++.++.++.-       +.+..+..++.+..+....|...+|-..|++.+..+..
T Consensus       233 ~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~-------~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~  305 (759)
T KOG0211|consen  233 AVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKV-------LESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLD  305 (759)
T ss_pred             HHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHH-------HHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHH
Confidence            34444567777777888999999999999997542       33455666899999999999999999999999998875


Q ss_pred             CCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHH
Q 012448          156 FPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILEL  235 (463)
Q Consensus       156 ~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalel  235 (463)
                      .-+--.-+ .....+  .+.+.....+..+|+++-+..+.+.+.=...   ...-..++.....+++ .=--++..+..-
T Consensus       306 l~~~~~d~-~~~~~~--~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~---~~~~~~~~~~~~l~~~-~~~e~r~a~a~~  378 (759)
T KOG0211|consen  306 LLDDDDDV-VKSLTE--SLVQAVEDGSWRVSYMVADKFSELSSAVGPS---ATRTQLVPPVSNLLKD-EEWEVRYAIAKK  378 (759)
T ss_pred             hcCCchhh-hhhhhH--HHHHHhcChhHHHHHHHhhhhhhHHHHhccc---cCcccchhhHHHHhcc-hhhhhhHHhhcc
Confidence            54311000 002233  3444666777788888777777666431110   1111344555555555 333444444443


Q ss_pred             HHHHHh
Q 012448          236 LYELAE  241 (463)
Q Consensus       236 l~eLa~  241 (463)
                      ..+++.
T Consensus       379 ~~~l~~  384 (759)
T KOG0211|consen  379 VQKLAC  384 (759)
T ss_pred             hHHHhh
Confidence            334333

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.01  E-value=5.3  Score=45.19  Aligned_cols=137  Identities=13%  Similarity=0.101  Sum_probs=99.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcH-HHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc
Q 012448           82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIY-PLLLDCLINGNEEVATASMDAIKKLAGFPNGI  160 (463)
Q Consensus        82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~-~~li~~l~d~d~~va~~A~~~L~~lak~~~~l  160 (463)
                      ...+|++|..||+.+|..|++.+..|=  -   .. ++      .|+ ..|=.|..|+-.-|.+.|+.++-++=.-.+..
T Consensus       110 IntfQk~L~DpN~LiRasALRvlSsIR--v---p~-Ia------PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~  177 (968)
T KOG1060|consen  110 INTFQKALKDPNQLIRASALRVLSSIR--V---PM-IA------PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ  177 (968)
T ss_pred             HHHHHhhhcCCcHHHHHHHHHHHHhcc--h---hh-HH------HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh
Confidence            677899999999999999988888751  1   11 22      233 33337999999999999999999886554433


Q ss_pred             cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHH
Q 012448          161 DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELA  240 (463)
Q Consensus       161 ~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa  240 (463)
                      +    +.+.+  .++.++...+..|-=-+.-.+-+++   ++-++.+.  +-+.++-+-|.+ =|.--|.-.+++|..-|
T Consensus       178 k----~qL~e--~I~~LLaD~splVvgsAv~AF~evC---PerldLIH--knyrklC~ll~d-vdeWgQvvlI~mL~RYA  245 (968)
T KOG1060|consen  178 K----DQLEE--VIKKLLADRSPLVVGSAVMAFEEVC---PERLDLIH--KNYRKLCRLLPD-VDEWGQVVLINMLTRYA  245 (968)
T ss_pred             H----HHHHH--HHHHHhcCCCCcchhHHHHHHHHhc---hhHHHHhh--HHHHHHHhhccc-hhhhhHHHHHHHHHHHH
Confidence            2    12334  5666666677766555544555555   77778776  688888888999 88889999999998877


Q ss_pred             hh
Q 012448          241 EI  242 (463)
Q Consensus       241 ~t  242 (463)
                      .+
T Consensus       246 R~  247 (968)
T KOG1060|consen  246 RH  247 (968)
T ss_pred             Hh
Confidence            63

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=89.93  E-value=3.1  Score=35.03  Aligned_cols=54  Identities=15%  Similarity=0.279  Sum_probs=42.7

Q ss_pred             ccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhccc
Q 012448          211 NLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNS  265 (463)
Q Consensus       211 gl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~  265 (463)
                      .|++.++.++.| .|.=||..|.|-|+++++.--+.-.-.=..+++.|+..+.+.
T Consensus        27 ~Il~pVL~~~~D-~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~   80 (97)
T PF12755_consen   27 EILPPVLKCFDD-QDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP   80 (97)
T ss_pred             HHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            689999999999 999999999999999998544443333456777777776653

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.87  E-value=27  Score=39.45  Aligned_cols=226  Identities=11%  Similarity=0.095  Sum_probs=131.1

Q ss_pred             hcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHH
Q 012448          179 AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQL  257 (463)
Q Consensus       179 ~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~  257 (463)
                      ..+.+.||-..--++..+.+.|||+...   .+.++.++.-|+| +|.=|-..+.-++.-|++ .+..++.=+.- -+.+
T Consensus       158 ~~~~~~vkqkaALclL~L~r~spDl~~~---~~W~~riv~LL~D-~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~  232 (938)
T KOG1077|consen  158 GSSMDYVKQKAALCLLRLFRKSPDLVNP---GEWAQRIVHLLDD-QHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSR  232 (938)
T ss_pred             CcchHHHHHHHHHHHHHHHhcCccccCh---hhHHHHHHHHhCc-cccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHH
Confidence            3556778888888999999999998654   3788999999999 999999999999999999 55544432211 1222


Q ss_pred             HHHHhcccccchhhhhhhhhHhhhhccccccchhcchh--hhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-C--
Q 012448          258 LCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDES--SAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-S--  332 (463)
Q Consensus       258 L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~--~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s--  332 (463)
                      |..+......|-         ..|      .+.|+..|  +.| .-..+..   .=...|+..+..-.+++--|=. .  
T Consensus       233 L~riv~~~~t~~---------qdY------Tyy~vP~PWL~vK-l~rlLq~---~p~~~D~~~r~~l~evl~~iLnk~~~  293 (938)
T KOG1077|consen  233 LSRIVVVVGTSL---------QDY------TYYFVPAPWLQVK-LLRLLQI---YPTPEDPSTRARLNEVLERILNKAQE  293 (938)
T ss_pred             HHHHHhhcccch---------hhc------eeecCCChHHHHH-HHHHHHh---CCCCCCchHHHHHHHHHHHHHhcccc
Confidence            222222222221         112      12222222  444 2223331   2245667777777777765543 1  


Q ss_pred             -HHHHHHHhhcC-chhHHHHHHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCCh
Q 012448          333 -IQGATLLLLCL-PPAARHVIDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTP  409 (463)
Q Consensus       333 -~eGk~~L~~~~-~~~~~~~l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p  409 (463)
                       +..|.+-+.+. ...+=.+++.+++.-++.. =.||.+.|+.++...  |.          .++=+.+|+.....+..+
T Consensus       294 ~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~r--E~----------NiRYLaLEsm~~L~ss~~  361 (938)
T KOG1077|consen  294 PPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHR--ET----------NIRYLALESMCKLASSEF  361 (938)
T ss_pred             CccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcc--cc----------cchhhhHHHHHHHHhccc
Confidence             23444444320 1122223333333322222 668999999999854  31          233333344433211122


Q ss_pred             --------hHHHHHHh--cCCHHHHHHHHHHHHHhhcCchh
Q 012448          410 --------SGLFLSVL--QQAAEIRLAGYRMITGLVARPWC  440 (463)
Q Consensus       410 --------~~~~~~~~--qpF~elr~A~~~~l~~l~~~~Wg  440 (463)
                              .+++++.+  -+.--+|.-|..+|-++|.+.-.
T Consensus       362 s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Na  402 (938)
T KOG1077|consen  362 SIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA  402 (938)
T ss_pred             hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhH
Confidence                    34555544  67888999999999999999765

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.27  E-value=2.9  Score=49.01  Aligned_cols=166  Identities=17%  Similarity=0.092  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchh-HHHHHHHhhccCcHHHHHHhhc
Q 012448           58 EDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLE-ASCALQLLIDYEIYPLLLDCLI  136 (463)
Q Consensus        58 ~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~-~~~~~~~~~~~~l~~~li~~l~  136 (463)
                      ...+..+++.+=+....+ -......-+-.=|..-+..|..+++++++-.+.+-+.+ -. +-..+++ -+.-+++..+.
T Consensus       269 ~sl~~~Iir~I~~~~~~~-~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~-lRnavle-i~~n~V~~~l~  345 (1251)
T KOG0414|consen  269 VSLAGNIIRSIGSPEPNE-KDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYT-LRNAVLE-ICANLVASELR  345 (1251)
T ss_pred             HHHHHHHHHHhcccchhc-ccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHH-HHHHHHH-HHHHHHHHHhc
Confidence            444444666553222222 23333444445556678889999999999998854321 11 1111111 12335567777


Q ss_pred             CCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHH
Q 012448          137 NGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLL  216 (463)
Q Consensus       137 d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~l  216 (463)
                      |++.+-...+...                 ..++  .|.+.+..-++-+|.|||.+..+|+..+..-.....  .++..+
T Consensus       346 d~e~~~~sk~~r~-----------------~~le--~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~--eV~~la  404 (1251)
T KOG0414|consen  346 DEELEEMSKSLRD-----------------ELLE--LLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRT--EVLELA  404 (1251)
T ss_pred             chhhhHHHHHHHH-----------------HHHH--HHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHH--HHHHHH
Confidence            7775444444333                 1222  444466678899999999999999987765555443  577788


Q ss_pred             HhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHH
Q 012448          217 EEGVSKKNDTLETLSILELLYELAE-IQHSAEF  248 (463)
Q Consensus       217 l~eL~~~~DvLv~lnalell~eLa~-t~~g~~~  248 (463)
                      .+.+.| .-.|||.||+.++..+-. .|.+.+.
T Consensus       405 ~grl~D-kSslVRk~Ai~Ll~~~L~~~Pfs~~~  436 (1251)
T KOG0414|consen  405 IGRLED-KSSLVRKNAIQLLSSLLDRHPFSSEL  436 (1251)
T ss_pred             hccccc-ccHHHHHHHHHHHHHHHhcCCchhhh
Confidence            888989 999999999999999877 7776665

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=89.25  E-value=3.5  Score=40.91  Aligned_cols=153  Identities=14%  Similarity=0.104  Sum_probs=105.8

Q ss_pred             CHHHHHHHHHHHHHHHhCCchhHHHHHH-HhhccCcHHHHHHhhc-------CCchHH-----HHHHHHHHHHHhCCCCC
Q 012448           93 SHSVKRLACKTVTCLLEDSDLEASCALQ-LLIDYEIYPLLLDCLI-------NGNEEV-----ATASMDAIKKLAGFPNG  159 (463)
Q Consensus        93 ~~~Vr~Lal~~l~~i~~~~~~~~~~~~~-~~~~~~l~~~li~~l~-------d~d~~v-----a~~A~~~L~~lak~~~~  159 (463)
                      +|.-|+-|+.++.+--+..   +. ++- +-...|.+..+++.|-       -|.++-     --.|...|.-+|.|++=
T Consensus         8 ~~~~Re~Al~eLsk~r~~~---~~-La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpet   83 (262)
T PF04078_consen    8 NPETRENALLELSKKRESF---PD-LAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPET   83 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC----TT-HHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTT
T ss_pred             CcchHHHHHHHHHHhhhcc---cc-hhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHH
Confidence            6677999999998854433   33 333 4455666666654433       332222     22366667788998863


Q ss_pred             ccccccCCCcchhhHhhHhhcC-----CchhHHHHHHHHHHHHhc-CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHH
Q 012448          160 IDIIFPADNKAATDLGNLVAQC-----SSLGRVRVLSLIVKLFSV-SRSVASVIFKANLLTLLEEGVSKKNDTLETLSIL  233 (463)
Q Consensus       160 l~~l~~~~~~~~~~L~~~~~~~-----~~~vR~Rv~el~v~ia~~-S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnal  233 (463)
                      -.....++..-  +|-+.+...     -+.+|.-.+.++..+.|. ++|..++..+++++|..+.-++. ...+.|.-|.
T Consensus        84 r~~Fl~a~ipl--yLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~-GselSKtvAt  160 (262)
T PF04078_consen   84 RMPFLKAHIPL--YLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF-GSELSKTVAT  160 (262)
T ss_dssp             HHHHHHTTGGG--GGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH-S-HHHHHHHH
T ss_pred             HHHHHHcCchh--hehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh-ccHHHHHHHH
Confidence            33444555543  555554322     366888888888888875 68899999999999999999998 8999999999


Q ss_pred             HHHHHHHhhHHHHHHHHhc
Q 012448          234 ELLYELAEIQHSAEFLSRT  252 (463)
Q Consensus       234 ell~eLa~t~~g~~~L~~~  252 (463)
                      -++..+-....|.+|+.++
T Consensus       161 fIlqKIL~dd~GL~yiC~t  179 (262)
T PF04078_consen  161 FILQKILLDDVGLNYICQT  179 (262)
T ss_dssp             HHHHHHHHSHHHHHHHTSS
T ss_pred             HHHHHHHcchhHHHHHhcC
Confidence            9999999999999999876

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=89.06  E-value=0.89  Score=36.43  Aligned_cols=63  Identities=22%  Similarity=0.167  Sum_probs=41.5

Q ss_pred             hhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhc
Q 012448          275 AIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLC  342 (463)
Q Consensus       275 aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~  342 (463)
                      ++.+.|.+.+...-+.|.++  ..-++.+++ ++  -+++-.+++++|+..||.|++|.+|.+.|.+.
T Consensus         7 aLWaighIgss~~G~~lL~~--~~iv~~iv~-~a--~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~   69 (73)
T PF14668_consen    7 ALWAIGHIGSSPLGIQLLDE--SDIVEDIVK-IA--ENSPVLSIRGTCFYVLGLISSTEEGAEILDEL   69 (73)
T ss_pred             HHHHHHhHhcChHHHHHHhh--cCHHHHHHH-HH--HhCCccchHHHHHHHHHHHhCCHHHHHHHHHc
Confidence            55667777764222334322  121333333 32  24566799999999999999999999999864

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=88.88  E-value=1.2  Score=50.95  Aligned_cols=110  Identities=15%  Similarity=0.228  Sum_probs=86.2

Q ss_pred             cCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHH
Q 012448           38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASC  117 (463)
Q Consensus        38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~  117 (463)
                      ...+|.||.++.+..  ++.++.+..++++++.    ..-...+.+++..+|+|.+|++|.-+...+.|.++..+.  . 
T Consensus       335 ~~v~p~lld~lkekk--~~l~d~l~~~~d~~~n----s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~--~-  405 (815)
T KOG1820|consen  335 KNVFPSLLDRLKEKK--SELRDALLKALDAILN----STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP--K-  405 (815)
T ss_pred             HhhcchHHHHhhhcc--HHHHHHHHHHHHHHHh----cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC--c-
Confidence            446899999999876  7788888888888866    333446889999999999999999999999999987642  1 


Q ss_pred             HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCC
Q 012448          118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGF  156 (463)
Q Consensus       118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~  156 (463)
                      ...--.-+++++.++..++|-+-.|..+|..++..+-++
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~  444 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV  444 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence            122112236899999999999999999998887665444

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=88.80  E-value=28  Score=35.08  Aligned_cols=190  Identities=24%  Similarity=0.210  Sum_probs=118.6

Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC
Q 012448           80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG  159 (463)
Q Consensus        80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~  159 (463)
                      ...+.+...|.++++.||..+.+.++.+   .   .         ...++.+...+.|++..|...|+.+|..+.     
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~---~---~---------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-----  102 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGEL---G---S---------EEAVPLLRELLSDEDPRVRDAAADALGELG-----  102 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhh---c---h---------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC-----
Confidence            4688999999999999999999987663   1   1         256888899999999999999999887664     


Q ss_pred             ccccccCCCcchhhHhhHhh-cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcH------------
Q 012448          160 IDIIFPADNKAATDLGNLVA-QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDT------------  226 (463)
Q Consensus       160 l~~l~~~~~~~~~~L~~~~~-~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~Dv------------  226 (463)
                           ++...+  .|.+.+. ..|..+|.++...+..+....           -+..++.-+.+ ++.            
T Consensus       103 -----~~~a~~--~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~-~~~~~a~~~~~~~~~  163 (335)
T COG1413         103 -----DPEAVP--PLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQD-EDSGSAAAALDAALL  163 (335)
T ss_pred             -----ChhHHH--HHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhcc-chhhhhhhhccchHH
Confidence                 233444  5555666 588889988777666665332           14444555555 332            


Q ss_pred             HHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHH
Q 012448          227 LETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDG  306 (463)
Q Consensus       227 Lv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~  306 (463)
                      .+|..+++.+..+...          -.+..+...+.+  .+..+|..+.-..|.+...  .            +.....
T Consensus       164 ~~r~~a~~~l~~~~~~----------~~~~~l~~~l~~--~~~~vr~~Aa~aL~~~~~~--~------------~~~~~~  217 (335)
T COG1413         164 DVRAAAAEALGELGDP----------EAIPLLIELLED--EDADVRRAAASALGQLGSE--N------------VEAADL  217 (335)
T ss_pred             HHHHHHHHHHHHcCCh----------hhhHHHHHHHhC--chHHHHHHHHHHHHHhhcc--h------------hhHHHH
Confidence            3455555544444331          112222233322  3335665665555555541  0            011222


Q ss_pred             HhccccCCChhhhhHHHHHHHhhcCCHH
Q 012448          307 RLGFLQSQDSDECESALEALGQIGSSIQ  334 (463)
Q Consensus       307 ~f~~~~~~d~~~~~~A~dtlG~Igss~e  334 (463)
                      ++.....++...+..++.++|.+|.-..
T Consensus       218 l~~~~~~~~~~vr~~~~~~l~~~~~~~~  245 (335)
T COG1413         218 LVKALSDESLEVRKAALLALGEIGDEEA  245 (335)
T ss_pred             HHHHhcCCCHHHHHHHHHHhcccCcchh
Confidence            2335567778888888999988887433

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=88.67  E-value=1.3  Score=40.45  Aligned_cols=149  Identities=14%  Similarity=0.118  Sum_probs=104.8

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL  119 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~  119 (463)
                      .++.|+.+|..-...+..+-.+..++.+++ ...+......+.+++..-+..++..-+..++..+..+.--.  ++. ..
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~--~dv-~~   79 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGP--PDV-GS   79 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT--HHH-HH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC--HHH-HH
Confidence            345667777652223667888888999997 44556667778899999998887778888888888887644  244 77


Q ss_pred             HHhhccCcHHHHHHhhc--CCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh-cCCch-hHHHHHHHHHH
Q 012448          120 QLLIDYEIYPLLLDCLI--NGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA-QCSSL-GRVRVLSLIVK  195 (463)
Q Consensus       120 ~~~~~~~l~~~li~~l~--d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~-~~~~~-vR~Rv~el~v~  195 (463)
                      +++...|+.+.++..+.  .++..+...+.+.|..-+-....-..|. .+..+  -|++... ..|+. +|.|..=.+++
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~-~~~~~--~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFIS-KNYVS--WLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH-HHCHH--HHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH-HHHHH--HHHHHHccccchHHHHHHHHHHHhc
Confidence            78889999999999998  8899999999999987665543333333 45555  7886664 44455 66665444443

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain

Probab=88.61  E-value=9.4  Score=37.22  Aligned_cols=143  Identities=20%  Similarity=0.202  Sum_probs=88.7

Q ss_pred             HHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccch--hcchhhhhhhHHH
Q 012448          226 TLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHM--FIDESSAKTVISA  303 (463)
Q Consensus       226 vLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~--~~~~~~~k~~p~~  303 (463)
                      .-...-...++.-|-++++|.+|+..++++.+|.+.+..  .||.        .|.... ..+++  -+...+..+|-.+
T Consensus        78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~--~d~~--------~g~~~~-~~lfs~~~l~~tl~~~Yf~~  146 (226)
T PF14666_consen   78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQ--VDPM--------SGITAH-DPLFSPQRLSTTLSRGYFLF  146 (226)
T ss_pred             hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHH--Hhhh--------cCCccc-ccccCHHHHHhhHHHHHHHH
Confidence            344556778999999999999999999999999999986  5665        343332 01221  0112244556444


Q ss_pred             HHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhh
Q 012448          304 IDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKI  383 (463)
Q Consensus       304 l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~  383 (463)
                                            +|.+.++.+|-++|.+.                      +-.+.+-+|+..+.     
T Consensus       147 ----------------------IG~lS~~~~Gl~lLe~~----------------------~if~~l~~i~~~~~-----  177 (226)
T PF14666_consen  147 ----------------------IGVLSSTPNGLKLLERW----------------------NIFTMLYHIFSLSS-----  177 (226)
T ss_pred             ----------------------HHHHhCChhHHHHHHHC----------------------CHHHHHHHHHccCc-----
Confidence                                  36677899999999974                      22334444444321     


Q ss_pred             hhhhhHHHHHHHHHHHHHhhCCCCChhHHHHH-Hh-cCCHHHHHHHHHHHHHhh
Q 012448          384 ILNADAEESLRHLIYEVASRSSKLTPSGLFLS-VL-QQAAEIRLAGYRMITGLV  435 (463)
Q Consensus       384 il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~-~~-qpF~elr~A~~~~l~~l~  435 (463)
                           .++ +.+++..+.==+. ..+.-.+++ .+ ..-..+|+.|-+.|..+.
T Consensus       178 -----~~~-l~klil~~LDY~~-~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll  224 (226)
T PF14666_consen  178 -----RDD-LLKLILSSLDYSV-DGHPRIILSKALTSGSESIRLYATKHLRVLL  224 (226)
T ss_pred             -----hHH-HHHHHHhhCCCCC-ccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence                 123 4445534331122 233444444 44 778899999999988764

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.57  E-value=2.6  Score=47.21  Aligned_cols=157  Identities=13%  Similarity=0.139  Sum_probs=113.2

Q ss_pred             HHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHH
Q 012448           65 LERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVAT  144 (463)
Q Consensus        65 L~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~  144 (463)
                      ++++.....-+.-...+-+.++.|....|-.+|.++=-.+.+.+...   .. .+.     +.+..++.-..|++..+..
T Consensus        34 ~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~---P~-~a~-----~avnt~~kD~~d~np~iR~  104 (734)
T KOG1061|consen   34 VKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK---PD-LAI-----LAVNTFLKDCEDPNPLIRA  104 (734)
T ss_pred             HHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccC---ch-HHH-----hhhhhhhccCCCCCHHHHH
Confidence            33443333333323345677888999999999999988888877544   22 222     3455667788899999988


Q ss_pred             HHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCC
Q 012448          145 ASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKK  223 (463)
Q Consensus       145 ~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~  223 (463)
                      .|+..+..+-  -+++ +.++     .  -|.+.+.+.++.+|.=+--+++++...++   +.|..+|+++.+-.-+.| 
T Consensus       105 lAlrtm~~l~--v~~i~ey~~-----~--Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D-  171 (734)
T KOG1061|consen  105 LALRTMGCLR--VDKITEYLC-----D--PLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSD-  171 (734)
T ss_pred             HHhhceeeEe--ehHHHHHHH-----H--HHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcC-
Confidence            8887775442  1111 2222     2  55557778899999998888888887777   557889999999999999 


Q ss_pred             CcHHHHHhHHHHHHHHHhhH
Q 012448          224 NDTLETLSILELLYELAEIQ  243 (463)
Q Consensus       224 ~DvLv~lnalell~eLa~t~  243 (463)
                      +|..|-.||+--+.++.+..
T Consensus       172 ~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  172 SNPMVVANALAALSEIHESH  191 (734)
T ss_pred             CCchHHHHHHHHHHHHHHhC
Confidence            99999999999999999933

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=88.11  E-value=30  Score=34.46  Aligned_cols=222  Identities=12%  Similarity=0.105  Sum_probs=132.6

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcccc
Q 012448           84 FVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDII  163 (463)
Q Consensus        84 ~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l  163 (463)
                      .|...|++.++.+|.-++.-++.++++-... . +.+.-+ .-++.....++.|  ......|++.+..+.+.+.     
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-~-L~~~ev-~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~~~-----   72 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD-F-LSRQEV-QVLLDFFCSRLDD--HACVQPALKGLLALVKMKN-----   72 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh-h-ccHHHH-HHHHHHHHHHhcc--HhhHHHHHHHHHHHHhCcC-----
Confidence            4677899999999999999999999876321 1 111111 1245566678854  4456666888888876653     


Q ss_pred             ccCCCcchhhHhhHh-----hcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHH
Q 012448          164 FPADNKAATDLGNLV-----AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYE  238 (463)
Q Consensus       164 ~~~~~~~~~~L~~~~-----~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~e  238 (463)
                      ++++... ..++.+.     ...--..|+.+|+++-.+..+-.+.+..+ ..+++..++..+++..|+=-=+=+.++++.
T Consensus        73 ~~~~~~~-~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~  150 (262)
T PF14500_consen   73 FSPESAV-KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKV  150 (262)
T ss_pred             CChhhHH-HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            2112211 0111111     12345679999999999988866665433 357888999999998999877788888887


Q ss_pred             HHhhHHHHHHHHhcchHHHHHHHhc--------ccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhcc
Q 012448          239 LAEIQHSAEFLSRTTLLQLLCSLIG--------NSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGF  310 (463)
Q Consensus       239 La~t~~g~~~L~~~gi~~~L~~~i~--------~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~  310 (463)
                      +...-.     . ......+.+.+.        ...+||..-++--|..+...-+...-.|    -.-.+|-++++    
T Consensus       151 i~~~~~-----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f----a~~~~p~LleK----  216 (262)
T PF14500_consen  151 ILQEFD-----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF----APFAFPLLLEK----  216 (262)
T ss_pred             HHHhcc-----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh----HHHHHHHHHHH----
Confidence            776322     1 334444444442        2346775323333333332221111111    11235555554    


Q ss_pred             ccCCChhhhhHHHHHHHhhcC
Q 012448          311 LQSQDSDECESALEALGQIGS  331 (463)
Q Consensus       311 ~~~~d~~~~~~A~dtlG~Igs  331 (463)
                      +.+..+..|.-++.||..-..
T Consensus       217 L~s~~~~~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  217 LDSTSPSVKLDSLQTLKACIE  237 (262)
T ss_pred             HcCCCcHHHHHHHHHHHHHHH
Confidence            577888888888888876444

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=87.97  E-value=3.8  Score=38.61  Aligned_cols=90  Identities=17%  Similarity=0.208  Sum_probs=60.1

Q ss_pred             CChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhH
Q 012448           39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEA  115 (463)
Q Consensus        39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~  115 (463)
                      .-||.+|+.|.+..  .-|+=.+..-..-++..-.+.   .+.||+...|.++|.+.++.|...+++.+..++...   +
T Consensus        38 ~~Lpif~dGL~Et~--~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~---~  112 (183)
T PF10274_consen   38 HYLPIFFDGLRETE--HPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS---D  112 (183)
T ss_pred             hHHHHHHhhhhccC--ccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh---h
Confidence            44889999999865  334433333333333332222   478899999999999999999999999999997655   3


Q ss_pred             HHHHHHhhccCcHHHHHHhhc
Q 012448          116 SCALQLLIDYEIYPLLLDCLI  136 (463)
Q Consensus       116 ~~~~~~~~~~~l~~~li~~l~  136 (463)
                      . +-+.++-+  |+.++..+.
T Consensus       113 ~-vG~aLvPy--yrqLLp~ln  130 (183)
T PF10274_consen  113 M-VGEALVPY--YRQLLPVLN  130 (183)
T ss_pred             h-hhHHHHHH--HHHHHHHHH
Confidence            3 44444443  555554443

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=87.93  E-value=7.9  Score=42.62  Aligned_cols=195  Identities=14%  Similarity=0.132  Sum_probs=124.1

Q ss_pred             hHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccc--cchhhchHHHHHH
Q 012448           10 SNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG--ASLIPHYMPFVQV   87 (463)
Q Consensus        10 ~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~--~~l~~~~~~~l~~   87 (463)
                      +..++.--.+|-+|- -+.+.+-.++|+.+ +-.++..+.+.+  +..+..++.+|..+.+...+  ..++.-+..-|..
T Consensus        64 ~dRil~fl~~f~~Y~-~~~dpeg~~~V~~~-~~h~lRg~eskd--k~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~  139 (885)
T COG5218          64 PDRILSFLKRFFEYD-MPDDPEGEELVAGT-FYHLLRGTESKD--KKVRKRSLQILALLSDVVREIDEVLANGLLEKLSE  139 (885)
T ss_pred             HHHHHHHHHHHHHhc-CCCChhhhHHHHHH-HHHHHhcccCcc--hhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            345566666777762 22333446666543 345566666655  67889999999999877766  4577777888888


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhh-cCCchHHHHHHHHHHHHHhCCCCCccccccC
Q 012448           88 GLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCL-INGNEEVATASMDAIKKLAGFPNGIDIIFPA  166 (463)
Q Consensus        88 gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l-~d~d~~va~~A~~~L~~lak~~~~l~~l~~~  166 (463)
                      -+-.-.+.||.=|+..+.+.=+..+++..         .+.-++...+ .||..+|.+.|+.-+            .+|+
T Consensus       140 R~~DRE~~VR~eAv~~L~~~Qe~~~neen---------~~~n~l~~~vqnDPS~EVRr~allni------------~vdn  198 (885)
T COG5218         140 RLFDREKAVRREAVKVLCYYQEMELNEEN---------RIVNLLKDIVQNDPSDEVRRLALLNI------------SVDN  198 (885)
T ss_pred             HHhcchHHHHHHHHHHHHHHHhccCChHH---------HHHHHHHHHHhcCcHHHHHHHHHHHe------------eeCC
Confidence            88889999999999999998765544332         1222233333 478888988876544            4677


Q ss_pred             CCcchhhHhhHhhcCCchhHHHHHH-HHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHH
Q 012448          167 DNKAATDLGNLVAQCSSLGRVRVLS-LIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLY  237 (463)
Q Consensus       167 ~~~~~~~L~~~~~~~~~~vR~Rv~e-l~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~  237 (463)
                      +..+  .+-+....-|...|+-||+ ++-.|...--..    ++.-++ .+.--|.+ .|.-|+..+..++.
T Consensus       199 sT~p--~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls----i~kri~-l~ewgl~d-Re~sv~~a~~d~ia  262 (885)
T COG5218         199 STYP--CILERARDVSGANRRMVYERCLPRIGDLKSLS----IDKRIL-LMEWGLLD-REFSVKGALVDAIA  262 (885)
T ss_pred             Ccch--hHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc----ccceeh-hhhhcchh-hhhhHHHHHHHHHH
Confidence            7887  6666778888899999998 444443322111    112222 22224555 56666666665553

>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised

Probab=87.61  E-value=27  Score=43.73  Aligned_cols=90  Identities=20%  Similarity=0.232  Sum_probs=65.5

Q ss_pred             hcCCchhHH---HHHHHHHHHH--hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHH----------------hHHHHHH
Q 012448          179 AQCSSLGRV---RVLSLIVKLF--SVSRSVASVIFKANLLTLLEEGVSKKNDTLETL----------------SILELLY  237 (463)
Q Consensus       179 ~~~~~~vR~---Rv~el~v~ia--~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~l----------------nalell~  237 (463)
                      ....+.-|.   -+++.++++.  ..+....+++...|++..++..+++ .|..++-                +-+-+|.
T Consensus      1462 ~~g~~~~r~~Al~lLdaLv~ld~~~~~~~il~~L~~~g~L~~lv~sl~~-~d~~l~~~~~~~~~~l~~L~~yea~laLL~ 1540 (1691)
T PF11894_consen 1462 IDGHGVCRILALSLLDALVQLDSQEKSNFILEYLSRRGYLKSLVDSLKR-TDEDLQASLQPIPDSLRELYVYEAKLALLL 1540 (1691)
T ss_pred             hcCcccHHHHHHHHHHHHHHhcccccccHHHHHHHhCCcHHHHHHHHHh-hHHHHHhccCCCCcchHhHHHHHHHHHHHH
Confidence            334444444   4556666666  2457889999999999999999977 5444433                3456889


Q ss_pred             HHHhhHHHHHHHHhcchHHHHHHHhcccccchh
Q 012448          238 ELAEIQHSAEFLSRTTLLQLLCSLIGNSATETI  270 (463)
Q Consensus       238 eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl  270 (463)
                      .+|+|..||++|.+.|++..|.+. .--+.||.
T Consensus      1541 RiAqtr~GA~~Ll~~~lf~~L~~~-~~l~~~Pd 1572 (1691)
T PF11894_consen 1541 RIAQTRSGAEALLQSGLFQVLAEC-KFLDADPD 1572 (1691)
T ss_pred             HHHcChHHHHHHHHCCHHHHHHcC-CCcCCCCc
Confidence            999999999999999999998654 22346675

This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=87.60  E-value=9.4  Score=35.26  Aligned_cols=117  Identities=20%  Similarity=0.278  Sum_probs=88.4

Q ss_pred             HHHHHhcCChHHHHHccccCCC-CcchHHHHHHHHHHHhccc-cc--------cchhhchHHHHHHhhcCCCHHHHHHHH
Q 012448           32 AKKFLDRFPLSVILNTLQTKPD-VPGLEDTLVVCLERIFKTK-YG--------ASLIPHYMPFVQVGLTADSHSVKRLAC  101 (463)
Q Consensus        32 ~~~~~~~~~l~~L~~~L~~~~~-~~~~~~~~~~vL~~il~~~-~~--------~~l~~~~~~~l~~gL~h~~~~Vr~Lal  101 (463)
                      |.+|.++..++.|+.-..++.+ .+...+..+..|.....=. |+        ..+..++..++...  ..++.|-+.++
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~--~~d~~i~q~sL   81 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSS--AMDASILQRSL   81 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccc--cccchHHHHHH
Confidence            6799999999999999988764 2345677777555543211 22        13445556666622  22799999999


Q ss_pred             HHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 012448          102 KTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLA  154 (463)
Q Consensus       102 ~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~la  154 (463)
                      .-+-.++-++   .. +.+.+.+.=-++.++.+|++.+..+...|+..+-.+.
T Consensus        82 aILEs~Vl~S---~~-ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~  130 (160)
T PF11841_consen   82 AILESIVLNS---PK-LYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF  130 (160)
T ss_pred             HHHHHHHhCC---HH-HHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9999999988   66 8889988889999999999999999999988886663

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.33  E-value=19  Score=40.92  Aligned_cols=361  Identities=14%  Similarity=0.128  Sum_probs=170.2

Q ss_pred             CCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHH---HHHHHhcccccc-----ch
Q 012448            6 SMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVV---CLERIFKTKYGA-----SL   77 (463)
Q Consensus         6 ~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~---vL~~il~~~~~~-----~l   77 (463)
                      +--|-.+++|.|+-|..-|=  |..-.     .+.|..|+|.|+++.  ...+.++.+   -+.|+|+.+++.     ++
T Consensus        16 ~~l~k~~vlqe~r~fnespv--n~r~c-----~~~lskllyll~qge--~~~~~eate~ff~~tKlfQskd~~LRr~vYl   86 (865)
T KOG1078|consen   16 QHLEKTTVLQEARTFNESPV--NPRKC-----RHILSKLLYLLNQGE--HFGETEATELFFAITKLFQSKDVSLRRMVYL   86 (865)
T ss_pred             cChhHHHHHHHHHhhcCCCC--CHHHH-----HHHHHHHHHHHhccc--ccchhhHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            33455689999996665543  33333     345678999999864  444444444   677777766442     11


Q ss_pred             hh--------c---hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHH
Q 012448           78 IP--------H---YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATAS  146 (463)
Q Consensus        78 ~~--------~---~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A  146 (463)
                      +-        .   +...+..=.+.-.+.+|--|++.+.+++.....      +     ++=..+=+++-|....++..|
T Consensus        87 ~Ikels~isedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~------~-----~iery~kqaivd~~~avSsaa  155 (865)
T KOG1078|consen   87 AIKELSKISEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTML------Q-----AIERYMKQAIVDKNPAVSSAA  155 (865)
T ss_pred             HHhhccccchhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchh------H-----HHHHHHHhHeeccccccchHH
Confidence            10        0   134444455666788888888888888775511      1     122233356777777777666


Q ss_pred             HHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcH
Q 012448          147 MDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDT  226 (463)
Q Consensus       147 ~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~Dv  226 (463)
                      .-.=-.+.+....   ++....   ...++.+...|.++.+-++-++-+|-++-.-+...++  ..|..  +-+++   +
T Consensus       156 lvss~hll~~~~~---~vkrw~---neiqea~~s~~~m~QyHalglLyqirk~drla~sklv--~~~~~--~~~~~---~  222 (865)
T KOG1078|consen  156 LVSSYHLLPISFD---VVKRWA---NEVQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLV--QKFTR--GSLKS---P  222 (865)
T ss_pred             HHHHhhhhcccHH---HHHHHH---HhhhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHcc--ccccc---h
Confidence            5432222222211   111011   1222233444556667777777776554333333222  11111  22222   2


Q ss_pred             HHHHhHHHHHHHHHh-hHHHHHHHHhcch----HHHHHHHhcccccchhhhhhhhhHhhh-hccccccchhcchhhhhhh
Q 012448          227 LETLSILELLYELAE-IQHSAEFLSRTTL----LQLLCSLIGNSATETILRSRAIMISGR-LLSKDDSHMFIDESSAKTV  300 (463)
Q Consensus       227 Lv~lnalell~eLa~-t~~g~~~L~~~gi----~~~L~~~i~~~~~dpl~r~~aili~g~-i~~f~~~~~~~~~~~~k~~  300 (463)
                         .....+++..++ ..+.      +..    +..|-+.+.+-.+.-+      +=+++ +-+..+..  . +-... -
T Consensus       223 ---~A~~~lir~~~~~l~~~------~~~~s~~~~fl~s~l~~K~emV~------~EaArai~~l~~~~--~-r~l~p-a  283 (865)
T KOG1078|consen  223 ---LAVCMLIRIASELLKEN------QQADSPLFPFLESCLRHKSEMVI------YEAARAIVSLPNTN--S-RELAP-A  283 (865)
T ss_pred             ---hHHHHHHHHHHHHhhhc------ccchhhHHHHHHHHHhchhHHHH------HHHHHHHhhccccC--H-hhcch-H
Confidence               222333333332 1110      111    1112111111111110      00111 11111110  0 00111 1


Q ss_pred             HHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCch
Q 012448          301 ISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSE  380 (463)
Q Consensus       301 p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~  380 (463)
                      ...++.   ++.++....+=+|+-||-.++.+--++-.-..   ..+.       ..++..-|-.+.=|++.+|..++..
T Consensus       284 vs~Lq~---flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN---~elE-------~lItd~NrsIat~AITtLLKTG~e~  350 (865)
T KOG1078|consen  284 VSVLQL---FLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN---LDLE-------SLITDSNRSIATLAITTLLKTGTES  350 (865)
T ss_pred             HHHHHH---HhcCcHHHHHHHHHHHHHHHHHhCCccccccc---hhHH-------hhhcccccchhHHHHHHHHHhcchh
Confidence            112221   34567777777788887776653322221111   1112       2222333555566778888766322


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHhhCCCCC----hhHHHHHHhcCCHHHHHHHHHHHHHhhcCchh
Q 012448          381 DKIILNADAEESLRHLIYEVASRSSKLT----PSGLFLSVLQQAAEIRLAGYRMITGLVARPWC  440 (463)
Q Consensus       381 ~~~il~~~~e~~l~~~~ye~~~~~~~~~----p~~~~~~~~qpF~elr~A~~~~l~~l~~~~Wg  440 (463)
                              .-++|.+.+ .++-+-+++.    -.+.+.++|+-||--+...+.+|..+-.+.-|
T Consensus       351 --------sv~rLm~qI-~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg  405 (865)
T KOG1078|consen  351 --------SVDRLMKQI-SSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGG  405 (865)
T ss_pred             --------HHHHHHHHH-HHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccC
Confidence                    222566666 5555533332    23557777777888888777777766555443

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.12  E-value=9.3  Score=43.69  Aligned_cols=184  Identities=20%  Similarity=0.199  Sum_probs=129.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448           82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID  161 (463)
Q Consensus        82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~  161 (463)
                      .+....-+..|-+.+|-.++.++.+.+++-   .  -.+.....+++...++.+.|.|.-|=-.|++.+.-++.-     
T Consensus       729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r---~--~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-----  798 (982)
T KOG4653|consen  729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKR---K--KATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-----  798 (982)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHhc---c--hhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-----
Confidence            455566778899999999999999999965   2  234555568899999999999999999999977777633     


Q ss_pred             ccccCCCcchhhHhhHhhcCC----chhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHH
Q 012448          162 IIFPADNKAATDLGNLVAQCS----SLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLY  237 (463)
Q Consensus       162 ~l~~~~~~~~~~L~~~~~~~~----~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~  237 (463)
                        ++.+.++  +|.+.-.+.+    ..-|++|=|.+.+++..--|+...-.+ -+++-++.-+++ +|.-.|++++-.+.
T Consensus       799 --y~e~il~--dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvre-pd~~~RaSS~a~lg  872 (982)
T KOG4653|consen  799 --YPEDILP--DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVRE-PDHEFRASSLANLG  872 (982)
T ss_pred             --cchhhHH--HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCC-chHHHHHhHHHHHH
Confidence              5566666  5554333333    345888889999999877666655444 677778888888 99999999999999


Q ss_pred             HHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhc
Q 012448          238 ELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLL  283 (463)
Q Consensus       238 eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~  283 (463)
                      +++. +..+..= .=..++..|++.+.. ...+++|.-|+.+..-.+
T Consensus       873 ~Lcq~~a~~vsd-~~~ev~~~Il~l~~~-d~s~~vRRaAv~li~~lL  917 (982)
T KOG4653|consen  873 QLCQLLAFQVSD-FFHEVLQLILSLETT-DGSVLVRRAAVHLLAELL  917 (982)
T ss_pred             HHHHHHhhhhhH-HHHHHHHHHHHHHcc-CCchhhHHHHHHHHHHHH
Confidence            9999 4322211 112344444444333 455666655555444443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=87.11  E-value=1.4  Score=29.77  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=33.9

Q ss_pred             HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhC
Q 012448          118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAG  155 (463)
Q Consensus       118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak  155 (463)
                      ..+.+.+.|.++.++.+++.++..+.+.|..+|..|+.
T Consensus         4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            45677888999999999999999999999999998863

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=86.72  E-value=15  Score=38.00  Aligned_cols=202  Identities=10%  Similarity=0.139  Sum_probs=138.2

Q ss_pred             HHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-------chh---hchHHHHHHhhcCCCHHHHHH
Q 012448           30 AAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-------SLI---PHYMPFVQVGLTADSHSVKRL   99 (463)
Q Consensus        30 ~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-------~l~---~~~~~~l~~gL~h~~~~Vr~L   99 (463)
                      ..+.++....-++.|+.+|..-+  =+.++.++.+...++-...+.       .+.   |.+...|..|.++|+-.+   
T Consensus        67 qLa~Ei~~~dll~~Li~~L~~L~--fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial---  141 (335)
T PF08569_consen   67 QLAQEIYRSDLLYLLIRNLPKLD--FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL---  141 (335)
T ss_dssp             HHHHHHHHHTHHHHHHHTGGGS---HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH---
T ss_pred             HHHHHHHHhCHHHHHHHHhhhCC--CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc---
Confidence            45677888888999999998765  456778888777776433222       222   446889999999998653   


Q ss_pred             HHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcc-hhhHhhH
Q 012448          100 ACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKA-ATDLGNL  177 (463)
Q Consensus       100 al~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~-~~~L~~~  177 (463)
                      .|..+.|..-+.   +. +++.+...+.+-.+..-++.+.-.||..|..+++.+-..++.+ ...+..+.-. -.....+
T Consensus       142 ~~g~mlRec~k~---e~-l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~L  217 (335)
T PF08569_consen  142 NCGDMLRECIKH---ES-LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKL  217 (335)
T ss_dssp             HHHHHHHHHTTS---HH-HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhh---HH-HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555544333   45 7777777777777889999999999999999999974333333 2222222210 0255567


Q ss_pred             hhcCCchhHHHHHHHHHHHHhc---CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448          178 VAQCSSLGRVRVLSLIVKLFSV---SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE  241 (463)
Q Consensus       178 ~~~~~~~vR~Rv~el~v~ia~~---S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~  241 (463)
                      +.+.|=+.|++.+.++.+|-.-   ..-...++.+..-+..+..-|++ +=--+|.-|.-++.=.+.
T Consensus       218 l~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d-~sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  218 LESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRD-KSKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             CT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH
T ss_pred             ccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHh
Confidence            7889999999999999999732   23445677777888899999998 766788888888776555

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=86.69  E-value=11  Score=42.28  Aligned_cols=76  Identities=16%  Similarity=0.244  Sum_probs=60.4

Q ss_pred             chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCc-hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 012448           76 SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSD-LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLA  154 (463)
Q Consensus        76 ~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~-~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~la  154 (463)
                      .+.+...-++.+|.++++..||-=+|.-+.++.+... .++. +..     ++..-+...|-|.+..|...|..+|+++-
T Consensus        81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~-vfn-----~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ  154 (892)
T KOG2025|consen   81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDD-VFN-----KLNEKLLIRLKDREPNVRIQAVLALSRLQ  154 (892)
T ss_pred             hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHH-HHH-----HHHHHHHHHHhccCchHHHHHHHHHHHHh
Confidence            5677789999999999999999999999999987441 1122 322     45556667899999999999999999997


Q ss_pred             CCC
Q 012448          155 GFP  157 (463)
Q Consensus       155 k~~  157 (463)
                      ..+
T Consensus       155 ~d~  157 (892)
T KOG2025|consen  155 GDP  157 (892)
T ss_pred             cCC
Confidence            544

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.55  E-value=6.7  Score=41.73  Aligned_cols=164  Identities=18%  Similarity=0.190  Sum_probs=118.3

Q ss_pred             HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC------CCc----cccccCCCcchhhHhhHhhcCCchhHH
Q 012448          118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP------NGI----DIIFPADNKAATDLGNLVAQCSSLGRV  187 (463)
Q Consensus       118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~------~~l----~~l~~~~~~~~~~L~~~~~~~~~~vR~  187 (463)
                      +.-++++-+.++.++..++.+++-|+-+..+.|.++.-..      .|.    +++++.+++.  .|.+.+.+-|+.++=
T Consensus       117 LYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vla--LLvqnveRLdEsvke  194 (536)
T KOG2734|consen  117 LYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLA--LLVQNVERLDESVKE  194 (536)
T ss_pred             HHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHH--HHHHHHHHhhhcchh
Confidence            7778888889999999999999999999999988775332      343    3556667776  666566666666653


Q ss_pred             ------HHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCC--CcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHH
Q 012448          188 ------RVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKK--NDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLL  258 (463)
Q Consensus       188 ------Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~--~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L  258 (463)
                            -++.++.++...-++..+.|++.|++.|++..+.+.  -|. -+.=|.|++.=+-+ +.+....+-+-.+++.+
T Consensus       195 ea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~a-Nk~YasEiLaillq~s~e~~~~~~~l~GiD~l  273 (536)
T KOG2734|consen  195 EADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDA-NKQYASEILAILLQNSDENRKLLGPLDGIDVL  273 (536)
T ss_pred             hhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcch-hHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence                  445678888899999999999999999999987772  243 34567899888888 55577777788888888


Q ss_pred             HHHhcccc-cchhh--------hhhhhhHhhhhcc
Q 012448          259 CSLIGNSA-TETIL--------RSRAIMISGRLLS  284 (463)
Q Consensus       259 ~~~i~~~~-~dpl~--------r~~aili~g~i~~  284 (463)
                      ..-+.--+ .||-.        ...--|+++.+.+
T Consensus       274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~  308 (536)
T KOG2734|consen  274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP  308 (536)
T ss_pred             HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh
Confidence            87765322 55421        1122356666665

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.52  E-value=3.6  Score=45.62  Aligned_cols=150  Identities=15%  Similarity=0.101  Sum_probs=103.2

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccc
Q 012448           83 PFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDI  162 (463)
Q Consensus        83 ~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~  162 (463)
                      ..++.||+...-.||+.|...+++++-+.   .. .+.     ..+-++++.+.|+...|-..|+.+|..|+.|-     
T Consensus       376 GA~VhGlEDEf~EVR~AAV~Sl~~La~ss---P~-FA~-----~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l-----  441 (823)
T KOG2259|consen  376 GALVHGLEDEFYEVRRAAVASLCSLATSS---PG-FAV-----RALDFLVDMFNDEIEVVRLKAIFALTMISVHL-----  441 (823)
T ss_pred             ceeeeechHHHHHHHHHHHHHHHHHHcCC---CC-cHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-----
Confidence            56788999999999999999999998765   22 221     35678889999999999999999999999883     


Q ss_pred             cccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhh
Q 012448          163 IFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEI  242 (463)
Q Consensus       163 l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t  242 (463)
                      ....+.++ +.|. -+...+..+|--..+++...--...+.++.|+. ++++.+-.-=+|.++++      -++..++ +
T Consensus       442 ~i~eeql~-~il~-~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~-~lL~~L~kyPqDrd~i~------~cm~~iG-q  511 (823)
T KOG2259|consen  442 AIREEQLR-QILE-SLEDRSVDVREALRELLKNARVSDLECIDMCVA-HLLKNLGKYPQDRDEIL------RCMGRIG-Q  511 (823)
T ss_pred             eecHHHHH-HHHH-HHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHhhhCCCCcHHHH------HHHHHHh-c
Confidence            22333443 2333 566778888888888887665556777777764 55555544445523332      3344444 4


Q ss_pred             HHHHHHHHhcchHH
Q 012448          243 QHSAEFLSRTTLLQ  256 (463)
Q Consensus       243 ~~g~~~L~~~gi~~  256 (463)
                      +|+..++...|-+-
T Consensus       512 nH~~lv~s~m~rfl  525 (823)
T KOG2259|consen  512 NHRRLVLSNMGRFL  525 (823)
T ss_pred             cChhhHHHHHHHHH
Confidence            56666655544433

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.37  E-value=11  Score=42.66  Aligned_cols=73  Identities=15%  Similarity=0.147  Sum_probs=51.1

Q ss_pred             ccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhcc-CcHHHHHHhhcCCchHHHHHHHH
Q 012448           70 KTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDY-EIYPLLLDCLINGNEEVATASMD  148 (463)
Q Consensus        70 ~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~-~l~~~li~~l~d~d~~va~~A~~  148 (463)
                      ..+.-+++...+.+.+.+||+|+++-||+=|.-++..|-.+.+       .++.|+ +++..  ..+.+.|.++++.|--
T Consensus       124 ckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~-------~L~pDapeLi~~--fL~~e~DpsCkRNAFi  194 (948)
T KOG1058|consen  124 CKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-------HLIPDAPELIES--FLLTEQDPSCKRNAFL  194 (948)
T ss_pred             hhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-------hhcCChHHHHHH--HHHhccCchhHHHHHH
Confidence            3445667777889999999999999999999999999887742       122221 11111  2456778888888765


Q ss_pred             HHH
Q 012448          149 AIK  151 (463)
Q Consensus       149 ~L~  151 (463)
                      .|-
T Consensus       195 ~L~  197 (948)
T KOG1058|consen  195 MLF  197 (948)
T ss_pred             HHH
Confidence            553

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=85.42  E-value=11  Score=40.59  Aligned_cols=158  Identities=15%  Similarity=0.041  Sum_probs=96.8

Q ss_pred             HHHHhhccCcHHHHHHhhcCCchHH--HHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh-cCCchhHHHHHHHHH
Q 012448          118 ALQLLIDYEIYPLLLDCLINGNEEV--ATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA-QCSSLGRVRVLSLIV  194 (463)
Q Consensus       118 ~~~~~~~~~l~~~li~~l~d~d~~v--a~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~-~~~~~vR~Rv~el~v  194 (463)
                      ++..+.+.+-+.+++..++.|+++-  .-.|.+.|..+.... ..+-+..-+. .  .+.++.. +.-....+-+..++-
T Consensus       172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae-N~d~va~~~~-~--~Il~lAK~~e~~e~aR~~~~il~  247 (832)
T KOG3678|consen  172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE-NRDRVARIGL-G--VILNLAKEREPVELARSVAGILE  247 (832)
T ss_pred             hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh-hhhHHhhccc-h--hhhhhhhhcCcHHHHHHHHHHHH
Confidence            6677777888999999999998765  778888888875332 2333333232 1  2221221 234455677899999


Q ss_pred             HHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh--hHHHHHHHHhcchHHHHHHHhcccccchhhh
Q 012448          195 KLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE--IQHSAEFLSRTTLLQLLCSLIGNSATETILR  272 (463)
Q Consensus       195 ~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~--t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r  272 (463)
                      +++|||++.-...++.|-++.++.-.+-++--|+|-.|+.+ ...+-  ...+-+-+++..+..-|.-...  ..|.+.|
T Consensus       248 ~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL-~N~~L~~~~a~qrrmveKr~~EWLF~LA~--skDel~R  324 (832)
T KOG3678|consen  248 HMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALAL-GNCALHGGQAVQRRMVEKRAAEWLFPLAF--SKDELLR  324 (832)
T ss_pred             HHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHh-hhhhhhchhHHHHHHHHhhhhhhhhhhhc--chHHHHH
Confidence            99999999999999999999999888875545556555543 22222  3334344444333333322211  1244555


Q ss_pred             hhhhhHhhhh
Q 012448          273 SRAIMISGRL  282 (463)
Q Consensus       273 ~~aili~g~i  282 (463)
                      ..|-+....+
T Consensus       325 ~~AClAV~vl  334 (832)
T KOG3678|consen  325 LHACLAVAVL  334 (832)
T ss_pred             HHHHHHHhhh
Confidence            5554444433

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]

Probab=85.35  E-value=1.3  Score=49.63  Aligned_cols=80  Identities=18%  Similarity=0.205  Sum_probs=63.1

Q ss_pred             hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCC
Q 012448           77 LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGF  156 (463)
Q Consensus        77 l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~  156 (463)
                      +..+|.+.|..--..|-+.||.=+++.+..++.+.   ++ -     ...++.++|+-||||+--+|..|.-.|..|..-
T Consensus       301 ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~k---PE-q-----E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~  371 (988)
T KOG2038|consen  301 LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNK---PE-Q-----ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAK  371 (988)
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCC---cH-H-----HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhh
Confidence            34566778888888889999999999999999876   22 1     235889999999999999999999999988555


Q ss_pred             CCCcccccc
Q 012448          157 PNGIDIIFP  165 (463)
Q Consensus       157 ~~~l~~l~~  165 (463)
                      +|.+..|+-
T Consensus       372 HPnMK~Vvi  380 (988)
T KOG2038|consen  372 HPNMKIVVI  380 (988)
T ss_pred             CCcceeehH
Confidence            556665443

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=84.66  E-value=4.2  Score=44.20  Aligned_cols=186  Identities=24%  Similarity=0.232  Sum_probs=113.9

Q ss_pred             hccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh-----------cCCchhHHHHHH
Q 012448          123 IDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA-----------QCSSLGRVRVLS  191 (463)
Q Consensus       123 ~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~-----------~~~~~vR~Rv~e  191 (463)
                      .+.+.++..+-+-+|++.+|+..|-..|+++....+      |+.++.  .|-.+..           -.+..+|.|++.
T Consensus       234 ~d~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~e------d~~~V~--~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~  305 (501)
T PF13001_consen  234 PDEERFPPLLIASADSNSSVSDRAEDLLKRLSVSLE------DPDLVD--RLFDLYLGKGIPPENGRPPASPRLQEKILS  305 (501)
T ss_pred             CcHhHHhheeeEEeCCcchHHHHHHHHHhhcCCCCC------CHHHHH--HHHHHHHhcCCchhcCCCCCCHHHHHHHHH
Confidence            455677777778899999999999999999976622      455554  4444544           468889999988


Q ss_pred             HHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCC--cHHHHHhHHHHH---HHHHh--hHHHHHHHHhcchHHHHHHHhc-
Q 012448          192 LIVKLFSVSRSVASVIFKANLLTLLEEGVSKKN--DTLETLSILELL---YELAE--IQHSAEFLSRTTLLQLLCSLIG-  263 (463)
Q Consensus       192 l~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~--DvLv~lnalell---~eLa~--t~~g~~~L~~~gi~~~L~~~i~-  263 (463)
                      ++.+    |..++...  ..++.-+...+.+ +  ..=+|.-+++.+   .....  .+...+ ..+..++..+-..+. 
T Consensus       306 ~L~k----S~~Aa~~~--~~~~~i~~~~l~~-~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~-~l~~~i~~~g~p~~~~  377 (501)
T PF13001_consen  306 LLSK----SVIAATSF--PNILQIVFDGLYS-DNTNSKLKSLALQFIRGSSWIFKHISPQILK-LLRPVILSQGWPLIQD  377 (501)
T ss_pred             HHHH----hHHHHhCC--ccHHHHHhccccC-CccccccchhcchhhhcchHHhhhcCHHHHH-HHHHHHHhcCcccccc
Confidence            8876    33332221  1344455556666 4  455566677777   33333  111111 223334444444442 


Q ss_pred             -----ccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448          264 -----NSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS  331 (463)
Q Consensus       264 -----~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs  331 (463)
                           +..++.-.|+.+--..|.++..  .-    +...+ =..++..+|+.+++.++.++.+.-++|+.+..
T Consensus       378 ~~~~~~~~~~~~lR~~aYe~lG~L~~~--~p----~l~~~-d~~li~~LF~sL~~~~~evr~sIqeALssl~~  443 (501)
T PF13001_consen  378 SSSQSNSSEDIELRSLAYETLGLLAKR--AP----SLFSK-DLSLIEFLFDSLEDESPEVRVSIQEALSSLAP  443 (501)
T ss_pred             ccccCCCcccHHHHHHHHHHHHHHHcc--Cc----ccccc-cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence                 2234555666666666766652  11    11222 24677788988888888999888889887765

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=84.62  E-value=1.9  Score=37.81  Aligned_cols=69  Identities=13%  Similarity=0.204  Sum_probs=55.6

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 012448           82 MPFVQVGL-TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLA  154 (463)
Q Consensus        82 ~~~l~~gL-~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~la  154 (463)
                      ..-|..-| +..|+.+-..||.-||..+++-   +. ....+.+-+.=..|+..+.++|.+|+..|+.++.++-
T Consensus        45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~---p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHY---PN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH----GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCcceeehhhcchHHHHHHC---hh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            44455555 4448999999999999999987   55 5667788888899999999999999999999998873

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=84.20  E-value=64  Score=34.57  Aligned_cols=187  Identities=17%  Similarity=0.136  Sum_probs=126.4

Q ss_pred             hchHHHHHHhhcC-CCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhc-----cCcHHHHHHhhcCCchHHHHHHHHHHHH
Q 012448           79 PHYMPFVQVGLTA-DSHSVKRLACKTVTCLLEDSDLEASCALQLLID-----YEIYPLLLDCLINGNEEVATASMDAIKK  152 (463)
Q Consensus        79 ~~~~~~l~~gL~h-~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~-----~~l~~~li~~l~d~d~~va~~A~~~L~~  152 (463)
                      ++|...+...|.+ +++.+.+-++.-+.-++...   .. .++.+.+     ++.+...+..+..+|.-+...|..+|+.
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~---~~-~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~  127 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED---DT-RVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAK  127 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc---hH-HHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHH
Confidence            4455555555544 36777778888888877765   44 5555554     4677777788889999999999999999


Q ss_pred             HhCCCCCc-cccccCCCcchhhHhhHhhcC-CchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCC-cHHHH
Q 012448          153 LAGFPNGI-DIIFPADNKAATDLGNLVAQC-SSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKN-DTLET  229 (463)
Q Consensus       153 lak~~~~l-~~l~~~~~~~~~~L~~~~~~~-~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~-DvLv~  229 (463)
                      +....+.- +....+-..+  .|...+... +.-.+.=+..++..+.+..+-- ....+.+.++.+..-|+... ++-++
T Consensus       128 l~~~~~~~~~~~~l~~~~~--~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~  204 (429)
T cd00256         128 LACFGLAKMEGSDLDYYFN--WLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQ  204 (429)
T ss_pred             HHhcCccccchhHHHHHHH--HHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHH
Confidence            98665421 1100000112  344333322 2223323335677777765544 44455567788888887644 67778


Q ss_pred             HhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhh
Q 012448          230 LSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILR  272 (463)
Q Consensus       230 lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r  272 (463)
                      -.++=++=-|+=.+++...+.+.+++..|++++..+.-.-.+|
T Consensus       205 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvR  247 (429)
T cd00256         205 YQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIR  247 (429)
T ss_pred             HHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHH
Confidence            8888888888888889999999999999999999988888776

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.86  E-value=12  Score=42.71  Aligned_cols=176  Identities=17%  Similarity=0.151  Sum_probs=117.4

Q ss_pred             CCchhHHHHHHH--HHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHH
Q 012448          181 CSSLGRVRVLSL--IVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLL  258 (463)
Q Consensus       181 ~~~~vR~Rv~el--~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L  258 (463)
                      .|+.+-.|+|.+  +.+++..- +........++|..++.-|+| +|..|=+||+.-+.-|++-       ....+++.+
T Consensus       737 ~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~Lkd-edsyvyLnaI~gv~~Lcev-------y~e~il~dL  807 (982)
T KOG4653|consen  737 HDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKD-EDSYVYLNAIRGVVSLCEV-------YPEDILPDL  807 (982)
T ss_pred             cCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcc-cCceeeHHHHHHHHHHHHh-------cchhhHHHH
Confidence            466666676654  45555432 455555666999999999999 9999999999988888873       356788888


Q ss_pred             HHHhcccccch--hhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHH
Q 012448          259 CSLIGNSATET--ILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGA  336 (463)
Q Consensus       259 ~~~i~~~~~dp--l~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk  336 (463)
                      .+.-.+.+.-+  -.    .|-.|.-.-  +++.--++.+.|.+-..+++++..+.++|-.-++.++-.+|+++.-..|.
T Consensus       808 ~e~Y~s~k~k~~~d~----~lkVGEai~--k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  808 SEEYLSEKKKLQTDY----RLKVGEAIL--KVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             HHHHHhcccCCCccc----eehHHHHHH--HHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence            88444433222  21    233442111  21111223367777788888888888888788999999999988633321


Q ss_pred             HHHhhcCchhHHHHHHHHHhhccc-hh---hHhHHhhhHHHhcCC
Q 012448          337 TLLLLCLPPAARHVIDAAFDRQGH-GK---QLAALHGLANIAGKT  377 (463)
Q Consensus       337 ~~L~~~~~~~~~~~l~~~~~~~~~-~~---k~r~L~al~~Il~~~  377 (463)
                            -++.+..++..+...... +.   |-+|.|-+...+...
T Consensus       882 ------vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t  920 (982)
T KOG4653|consen  882 ------VSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT  920 (982)
T ss_pred             ------hhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc
Confidence                  134566666666666553 33   888999999988854

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=83.52  E-value=18  Score=38.96  Aligned_cols=167  Identities=13%  Similarity=0.025  Sum_probs=107.5

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhch-HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHY-MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA  118 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~-~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~  118 (463)
                      -+..|+.-++.-|-....+-++.-+|+.|+.+-.-+.++..- ..-+.-+=...-+...++.+.-++.+.+|+   .+ .
T Consensus       181 ~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS---ee-t  256 (832)
T KOG3678|consen  181 GLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHS---EE-T  256 (832)
T ss_pred             hHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhh---HH-H
Confidence            345555555543311122445555888887766555444332 222222233345667788889999999998   66 8


Q ss_pred             HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC--CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448          119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN--GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL  196 (463)
Q Consensus       119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~--~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i  196 (463)
                      .+-++..+.+..++.-....+..+-+.++-+|.+++-|.-  +-..++....-+  -|-.+.-+.|+..|+-+|-.++.|
T Consensus       257 ~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~E--WLF~LA~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  257 CQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAE--WLFPLAFSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhh--hhhhhhcchHHHHHHHHHHHHhhh
Confidence            8888899999999987777788899999999999987752  112334333333  344466778999999999888888


Q ss_pred             HhcCHHHHHHHHhhccH
Q 012448          197 FSVSRSVASVIFKANLL  213 (463)
Q Consensus       197 a~~S~~~~~~v~~sgl~  213 (463)
                      ++.. |.-..|..||-+
T Consensus       335 at~K-E~E~~VrkS~Tl  350 (832)
T KOG3678|consen  335 ATNK-EVEREVRKSGTL  350 (832)
T ss_pred             hhhh-hhhHHHhhccch
Confidence            7653 333344445543

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=83.37  E-value=2.7  Score=28.30  Aligned_cols=39  Identities=18%  Similarity=0.055  Sum_probs=34.3

Q ss_pred             HHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHH
Q 012448          201 RSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELA  240 (463)
Q Consensus       201 ~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa  240 (463)
                      ++....+.+.|.++.++..+.+ +|.=++.+++..|+.|+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKS-EDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHc
Confidence            3466788899999999999997 89999999999999876

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=83.12  E-value=57  Score=33.21  Aligned_cols=99  Identities=20%  Similarity=0.162  Sum_probs=63.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhh--ccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC--
Q 012448           82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLI--DYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP--  157 (463)
Q Consensus        82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~--~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~--  157 (463)
                      ......+|.+-+...|+.++..+.+++.+.-     ..+.+.  ...++..+..|+.-+...=..-|..++.-++=+-  
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-----~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~  119 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-----LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA  119 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence            3455667788889999999999999997662     222222  2257888899998776544555666666555441  


Q ss_pred             -CCccccccCCCcchhhHhhHhhcCCchhHHH
Q 012448          158 -NGIDIIFPADNKAATDLGNLVAQCSSLGRVR  188 (463)
Q Consensus       158 -~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~R  188 (463)
                       ...+.+|. ...+  .|++.+...++.++.|
T Consensus       120 g~~~~ei~~-~~~~--~L~~~l~d~s~~~~~R  148 (309)
T PF05004_consen  120 GEDSEEIFE-ELKP--VLKRILTDSSASPKAR  148 (309)
T ss_pred             CccHHHHHH-HHHH--HHHHHHhCCccchHHH
Confidence             12244454 3444  7777777666555554

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=82.68  E-value=5  Score=44.10  Aligned_cols=129  Identities=14%  Similarity=0.117  Sum_probs=82.1

Q ss_pred             cchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHh
Q 012448           55 PGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDC  134 (463)
Q Consensus        55 ~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~  134 (463)
                      ...+..++..+-+.|+  +-+++...-.+.+..-.+..+..||.-|++.|-.+.+++   .. .+.     .+.-.|+++
T Consensus        36 ~k~K~Laaq~I~kffk--~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~---~~-~v~-----kvaDvL~Ql  104 (556)
T PF05918_consen   36 PKEKRLAAQFIPKFFK--HFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN---PE-HVS-----KVADVLVQL  104 (556)
T ss_dssp             HHHHHHHHHHHHHHHC--C-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T-----T--HH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh--hChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH---HH-HHh-----HHHHHHHHH
Confidence            5667778889999965  667788888899999999999999999999998887754   22 221     234456678


Q ss_pred             hcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh---cCCchhHHHHHHHH-HHHHhcCHHH
Q 012448          135 LINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA---QCSSLGRVRVLSLI-VKLFSVSRSV  203 (463)
Q Consensus       135 l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~---~~~~~vR~Rv~el~-v~ia~~S~~~  203 (463)
                      |+.+|......+-++|..+.+..+       .+.+.  .|-..+.   ..++.+|-|++..+ .++.....+.
T Consensus       105 L~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~--~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~  168 (556)
T PF05918_consen  105 LQTDDPVELDAVKNSLMSLLKQDP-------KGTLT--GLFSQIESSKSGDEQVRERALKFLREKLKPLKPEL  168 (556)
T ss_dssp             TT---HHHHHHHHHHHHHHHHH-H-------HHHHH--HHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTT
T ss_pred             HhcccHHHHHHHHHHHHHHHhcCc-------HHHHH--HHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHH
Confidence            888887777778888887776654       11222  2222333   67899999999877 4444443333

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=82.20  E-value=92  Score=34.94  Aligned_cols=168  Identities=14%  Similarity=0.123  Sum_probs=110.7

Q ss_pred             hHHHHHccccCCCCcchHHHHHH---HHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHH
Q 012448           41 LSVILNTLQTKPDVPGLEDTLVV---CLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASC  117 (463)
Q Consensus        41 l~~L~~~L~~~~~~~~~~~~~~~---vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~  117 (463)
                      ...+++.|++..  |..+..+++   .|.+++++-+--....++..-|-.-|.+.+|.|--..++++.+|..--+..   
T Consensus       606 vStiL~~L~~k~--p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~---  680 (975)
T COG5181         606 VSTILKLLRSKP--PDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFR---  680 (975)
T ss_pred             HHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccc---
Confidence            345677888876  566665555   777777766666677778888999999999999999999999987533211   


Q ss_pred             HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcc----hhhHhhHhhcCCchhHHHHHHHH
Q 012448          118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKA----ATDLGNLVAQCSSLGRVRVLSLI  193 (463)
Q Consensus       118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~----~~~L~~~~~~~~~~vR~Rv~el~  193 (463)
                      .-|- .-.+++|.+.--|.+....|-..-++.+..|++..|.-     .++-+    --.|...+.+.|-.+|+.+-+.+
T Consensus       681 ~mqp-Pi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey-----i~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tf  754 (975)
T COG5181         681 SMQP-PISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEY-----IGVREWMRICFELVDSLKSWNKEIRRNATETF  754 (975)
T ss_pred             ccCC-chhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc-----CCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Confidence            1111 12378898888999999999999999999999887641     01100    00223345566667777776666


Q ss_pred             HHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHH
Q 012448          194 VKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTL  227 (463)
Q Consensus       194 v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvL  227 (463)
                      --|++.=       =-..++..+++.|+- .|--
T Consensus       755 G~Is~ai-------GPqdvL~~LlnnLkv-qeRq  780 (975)
T COG5181         755 GCISRAI-------GPQDVLDILLNNLKV-QERQ  780 (975)
T ss_pred             hhHHhhc-------CHHHHHHHHHhcchH-HHHH
Confidence            6665431       112455566666665 4443

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=82.09  E-value=29  Score=39.35  Aligned_cols=179  Identities=15%  Similarity=0.080  Sum_probs=110.6

Q ss_pred             ccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhh-----cCCchHHHHHH
Q 012448           72 KYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCL-----INGNEEVATAS  146 (463)
Q Consensus        72 ~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l-----~d~d~~va~~A  146 (463)
                      .+|++....|.++.-.|+...-...+-+.....    ++.+.+-         .|+++.+..-+     +++++.-++++
T Consensus       367 nDp~eyirry~df~d~g~spdlaal~fl~~~~s----Krke~Tf---------qgiLsf~~sil~qsaa~psn~dnarq~  433 (970)
T COG5656         367 NDPDEYIRRYYDFFDNGLSPDLAALFFLIISKS----KRKEETF---------QGILSFLLSILGQSAATPSNIDNARQA  433 (970)
T ss_pred             cCHHHHHHHhcchhcCCCChhHHHHHHHHHHhc----ccchhhh---------hhHHHHHHHHHhcccCCCCccccHHHH
Confidence            367777777888888887655444443332221    1221111         16677776665     34444455554


Q ss_pred             HHHHHHHh-------CCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhh
Q 012448          147 MDAIKKLA-------GFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEG  219 (463)
Q Consensus       147 ~~~L~~la-------k~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~e  219 (463)
                      -.+|..+|       +.+|. ..++.--.+.  ++.+....+.-.+|-|+|+.+..+   |.|--....-+.+++...++
T Consensus       434 egalr~lasi~s~itk~sp~-an~me~fiv~--hv~P~f~s~ygfL~Srace~is~~---eeDfkd~~ill~aye~t~nc  507 (970)
T COG5656         434 EGALRLLASIKSFITKMSPA-ANVMEYFIVN--HVIPAFRSNYGFLKSRACEFISTI---EEDFKDNGILLEAYENTHNC  507 (970)
T ss_pred             hhHHHHHHHHHHHhccCchH-HHHHHHHHHH--HhhHhhcCcccchHHHHHHHHHHH---HHhcccchHHHHHHHHHHHH
Confidence            44444333       22221 1111111122  444555678889999999999888   67777777777889999999


Q ss_pred             cCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhc--chHHHHHHHhcccccchh
Q 012448          220 VSKKNDTLETLSILELLYELAEIQHSAEFLSRT--TLLQLLCSLIGNSATETI  270 (463)
Q Consensus       220 L~~~~DvLv~lnalell~eLa~t~~g~~~L~~~--gi~~~L~~~i~~~~~dpl  270 (463)
                      +++ ++.=|++.|+--+.-+-...+--.-+...  +.+++|...-+.-+-||+
T Consensus       508 l~n-n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~L  559 (970)
T COG5656         508 LKN-NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPL  559 (970)
T ss_pred             Hhc-CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHH
Confidence            999 99999999887777666544333222222  778888887777788998

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=81.97  E-value=25  Score=35.92  Aligned_cols=179  Identities=17%  Similarity=0.113  Sum_probs=114.0

Q ss_pred             HHHHccccCCCCcc-hHHHHHHHHHHHhccccccchhhch---HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448           43 VILNTLQTKPDVPG-LEDTLVVCLERIFKTKYGASLIPHY---MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA  118 (463)
Q Consensus        43 ~L~~~L~~~~~~~~-~~~~~~~vL~~il~~~~~~~l~~~~---~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~  118 (463)
                      .|-.||+..=  |. .-..+=+|-+.+|+...+..+.+.+   .+=|-.-+.+.+-.||-..++-+.+..-.-   .. .
T Consensus        58 rLaqCL~P~L--PsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL---~~-~  131 (307)
T PF04118_consen   58 RLAQCLNPAL--PSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPL---GP-A  131 (307)
T ss_pred             HHHHhcCCCC--ChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCc---cH-H
Confidence            4567777654  32 3334444777777777776665543   444455567778899999888888766433   11 1


Q ss_pred             HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448          119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS  198 (463)
Q Consensus       119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~  198 (463)
                      ...+. .+++..++-.+-|+..++-....+.|..+...-       +.+.+. +-|= ...-.++.+|.=++..+.+-..
T Consensus       132 L~p~l-~~li~slLpGLede~sE~~~~~~~ll~~l~~~v-------~~~~F~-~~lw-l~ii~sp~~Rl~al~~l~~~l~  201 (307)
T PF04118_consen  132 LRPCL-KGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAV-------GDKYFW-QCLW-LCIITSPSRRLGALNYLLRRLP  201 (307)
T ss_pred             HHHHH-HHHHHHhccccccCCchHHHHHHHHHHHHHHhc-------ChhHHH-HHHH-HHHhcCcchhHHHHHHHHHhCC
Confidence            11222 267777778888999999999999999987442       222211 1222 3344788888888887766544


Q ss_pred             c--------CHHHHHHHHh--hccH-HHHHhhcCCCCcHHHHHhHHHHHHH
Q 012448          199 V--------SRSVASVIFK--ANLL-TLLEEGVSKKNDTLETLSILELLYE  238 (463)
Q Consensus       199 ~--------S~~~~~~v~~--sgl~-~~ll~eL~~~~DvLv~lnalell~e  238 (463)
                      .        +.+..+.+..  .|++ ..+...|.| +|+|||-++++++-.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D-~~iLVqR~~LDlLl~  251 (307)
T PF04118_consen  202 KFQNDELSLSSEEQEYCLGPDPGLLVRALCACLED-ENILVQRGFLDLLLS  251 (307)
T ss_pred             cccccccccchHHHHHhcCCCccHHHHHHHHHhCC-chHHHHHHHHHHHHH
Confidence            3        2333344432  4554 777788888 899999988888765

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.06  E-value=3.5  Score=46.50  Aligned_cols=36  Identities=14%  Similarity=0.252  Sum_probs=29.3

Q ss_pred             hHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHH
Q 012448          173 DLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIF  208 (463)
Q Consensus       173 ~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~  208 (463)
                      .|.+......+.+|++|+.+.+++-..+.+-+...+
T Consensus       508 ~laksFs~E~~evKlQILnL~aKLyl~~~~~~kll~  543 (968)
T KOG1060|consen  508 KLAKSFSDEGDEVKLQILNLSAKLYLTNIDQTKLLV  543 (968)
T ss_pred             HHHHhhccccchhhHHHHHhhhhheEechhhHHHHH
Confidence            666667788999999999999999888877765543

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=80.36  E-value=19  Score=40.50  Aligned_cols=125  Identities=10%  Similarity=0.128  Sum_probs=86.2

Q ss_pred             HHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHH-HhhcCCCHHHHHHHHHHHHHHHhCCch
Q 012448           35 FLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQ-VGLTADSHSVKRLACKTVTCLLEDSDL  113 (463)
Q Consensus        35 ~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~-~gL~h~~~~Vr~Lal~~l~~i~~~~~~  113 (463)
                      .+....+|.|+.|+++.+  ....+.+..++-.++...+...+-+.+.+-|- -+++|.+..||.-++-.++.++++-  
T Consensus       385 ~~~~~IlplL~~S~~~~~--~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l--  460 (700)
T KOG2137|consen  385 EVKEKILPLLYRSLEDSD--VQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL--  460 (700)
T ss_pred             HHHHHHHHHHHHHhcCcc--hhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH--
Confidence            344557889999999765  66677777788888877776655555443332 2889999999999999999998655  


Q ss_pred             hHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHh-CCCCCccccccCCCcc
Q 012448          114 EASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLA-GFPNGIDIIFPADNKA  170 (463)
Q Consensus       114 ~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~la-k~~~~l~~l~~~~~~~  170 (463)
                       +.  . .++  +.+..+..|++-.|..+.-.-+.+...+. .++.| +.+....+++
T Consensus       461 -D~--~-~v~--d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlP  511 (700)
T KOG2137|consen  461 -DK--A-AVL--DELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLP  511 (700)
T ss_pred             -HH--H-HhH--HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhh
Confidence             22  1 111  45677778998888888877777777664 34444 2233445555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	463
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.82
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.82
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.82
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.79
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.78
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.77
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.76
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.76
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.74
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.74
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.72
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.68
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.65
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.65
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.65
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.64
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.62
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.61
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.6
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.6
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.59
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.58
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.55
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.54
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.51
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.42
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.42
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.38
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.36
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.27
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.26
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.23
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.16
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.15
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.14
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.13
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.12
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.12
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.11
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.1
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.1
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.1
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.04
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.97
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.96
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.96
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.93
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	98.92
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.91
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.9
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.9
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.86
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.8
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.74
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.72
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.69
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.64
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	98.62
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.62
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.58
3grl_A	651	General vesicular transport factor P115; vesicle t	98.58
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.56
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.42
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.36
3grl_A	651	General vesicular transport factor P115; vesicle t	98.31
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.3
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.96
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.94
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.83
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.65
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.57
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.46
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.33
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.3
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.21
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.21
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.85
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.83
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	96.73
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	96.72
2x19_B	963	Importin-13; nuclear transport, protein transport;	96.62
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	96.51
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.51
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	96.45
2x19_B	963	Importin-13; nuclear transport, protein transport;	96.44
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.3
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	95.79
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.73
2x1g_F	971	Cadmus; transport protein, developmental protein,	95.68
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	95.55
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.85
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	94.53
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.41
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	94.29
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	93.94
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	93.74
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	92.5
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	91.49
3vld_A	500	DNA mismatch repair protein HSM3; heat repeat, RPT	90.94
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	90.21
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	89.38
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	89.06
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	87.85
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	87.07
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	86.71
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	85.15
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	85.09
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	83.16
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	82.97
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	82.89
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	81.53
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	80.56

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.82  E-value=8.3e-18  Score=178.23  Aligned_cols=401  Identities=13%  Similarity=0.092  Sum_probs=296.1

Q ss_pred             CCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccc--cc-hhhchH
Q 012448            6 SMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG--AS-LIPHYM   82 (463)
Q Consensus         6 ~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~--~~-l~~~~~   82 (463)
                      ..+|+..-..++..|.+.-...++...+.++....+|.|+.+|++.+ ++..+..++.+|..+......  .. ......
T Consensus        97 ~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i  175 (530)
T 1wa5_B           97 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQTKVVVDADAV  175 (530)
T ss_dssp             SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCH
Confidence            34566666666666654432222334566788889999999998762 377888899999998542111  11 235678


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC-CCcc
Q 012448           83 PFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP-NGID  161 (463)
Q Consensus        83 ~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~-~~l~  161 (463)
                      +.|...|.++++.||+.+++.++.+..+.   .. ..+.+.+.++++.++..+.+++..+.+.|+.+|..++.+. +...
T Consensus       176 ~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~---~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~  251 (530)
T 1wa5_B          176 PLFIQLLYTGSVEVKEQAIWALGNVAGDS---TD-YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD  251 (530)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhCCC---cc-chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence            99999999999999999999999999876   55 6677788899999999999999999999999999999886 4445


Q ss_pred             ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448          162 IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE  241 (463)
Q Consensus       162 ~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~  241 (463)
                      .....++++  .|.+++.+.++.+|..++.++.+++..+++..+.+.+.|+++.++..|.+ .|.-++..++..|..++.
T Consensus       252 ~~~~~~~l~--~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~  328 (530)
T 1wa5_B          252 WSVVSQALP--TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH-ESTLVQTPALRAVGNIVT  328 (530)
T ss_dssp             HHHHGGGHH--HHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhHHH--HHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC-CChhhHHHHHHHHHHHHc
Confidence            455567777  77778888899999999999999999999999999999999999999999 999999999999999998


Q ss_pred             -hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccc-cc-hhcchhhhhhhHHHHHHHhccccCCChhh
Q 012448          242 -IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDD-SH-MFIDESSAKTVISAIDGRLGFLQSQDSDE  318 (463)
Q Consensus       242 -t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~-~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~~~  318 (463)
                       .+...+.+.+.|++..|+..+.+.  ++-+|..++.+.+.+..... .. .++   -.+.+|.+++    ++.++++.+
T Consensus       329 ~~~~~~~~~~~~~~l~~L~~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~---~~~~l~~L~~----lL~~~~~~v  399 (530)
T 1wa5_B          329 GNDLQTQVVINAGVLPALRLLLSSP--KENIKKEACWTISNITAGNTEQIQAVI---DANLIPPLVK----LLEVAEYKT  399 (530)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH---HTTCHHHHHH----HHHHSCHHH
T ss_pred             CCHHHHHHHHHcchHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHH---HCCCHHHHHH----HHhcCCHHH
Confidence             677888889999999999999864  67788888888888775211 11 112   1244556555    345688999


Q ss_pred             hhHHHHHHHhhcC--CH--HHHHHHhhcCchhHHHHHHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhh-hhhHHHH
Q 012448          319 CESALEALGQIGS--SI--QGATLLLLCLPPAARHVIDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIIL-NADAEES  392 (463)
Q Consensus       319 ~~~A~dtlG~Igs--s~--eGk~~L~~~~~~~~~~~l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il-~~~~e~~  392 (463)
                      +..|+|+||++..  +.  +..+.+..  .+.+..++..+...  +.. +..++.+|.+|+...  +..... ....+. 
T Consensus       400 ~~~a~~aL~~l~~~~~~~~~~~~~l~~--~~~l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~--~~~~~~~~~~~~~-  472 (530)
T 1wa5_B          400 KKEACWAISNASSGGLQRPDIIRYLVS--QGCIKPLCDLLEIA--DNRIIEVTLDALENILKMG--EADKEARGLNINE-  472 (530)
T ss_dssp             HHHHHHHHHHHHHHTTTCTHHHHHHHH--TTCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHH--HHHHHHHTCSSCH-
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHH--CCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhh--hhhhhcccccccH-
Confidence            9999999999975  33  44444443  23555555443321  222 788999999999743  210000 000011 


Q ss_pred             HHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcC
Q 012448          393 LRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVAR  437 (463)
Q Consensus       393 l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~  437 (463)
                      ....+ +..      .-+..+..+. .|-++++..|+.++..++.-
T Consensus       473 ~~~~l-~~~------g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~  511 (530)
T 1wa5_B          473 NADFI-EKA------GGMEKIFNCQQNENDKIYEKAYKIIETYFGE  511 (530)
T ss_dssp             HHHHH-HHT------THHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             HHHHH-HHc------CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence            22222 321      2355667777 88999999999999888764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.82  E-value=1e-17  Score=176.99  Aligned_cols=403  Identities=14%  Similarity=0.091  Sum_probs=299.0

Q ss_pred             CCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc-----hhhc
Q 012448            6 SMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS-----LIPH   80 (463)
Q Consensus         6 ~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-----l~~~   80 (463)
                      ..+|+..-..++..+.+.-...++.....++....+|.|+.+|++.+ .+..+..++.+|..+..  ....     ....
T Consensus        84 ~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~--~~~~~~~~~~~~g  160 (528)
T 4b8j_A           84 YSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED-FPQLQFEAAWALTNIAS--GTSENTKVVIDHG  160 (528)
T ss_dssp             TSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT-CHHHHHHHHHHHHHHHT--SCHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhC--CCHHHHHHHHhCC
Confidence            44566666666666654422223345677888899999999998753 36788888999999854  2221     2335


Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhh-cCCchHHHHHHHHHHHHHhCCCCC
Q 012448           81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCL-INGNEEVATASMDAIKKLAGFPNG  159 (463)
Q Consensus        81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l-~d~d~~va~~A~~~L~~lak~~~~  159 (463)
                      ..+.|...|.++++.||+.++++++++..+.   .. ....+.+.++++.++.++ .+++..+.+.|+.+|..++...+.
T Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~---~~-~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~  236 (528)
T 4b8j_A          161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDS---PK-CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ  236 (528)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC---HH-HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC---hh-hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC
Confidence            7899999999999999999999999999876   55 677888899999999999 788999999999999999998655


Q ss_pred             ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHH
Q 012448          160 IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYEL  239 (463)
Q Consensus       160 l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eL  239 (463)
                      .......++++  .|.+++.+.+..++..++.++.+++..+++..+.+.+.|+++.++..|.+ .|.-++..|+..|..+
T Consensus       237 ~~~~~~~~~l~--~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~v~~~a~~~L~nl  313 (528)
T 4b8j_A          237 PSFEQTRPALP--ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-PSPSVLIPALRTVGNI  313 (528)
T ss_dssp             CCHHHHTTHHH--HHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHH--HHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC-CChhHHHHHHHHHHHH
Confidence            54445567777  78878888999999999999999999999999999999999999999999 8999999999999999


Q ss_pred             Hh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccc-cc-hhcchhhhhhhHHHHHHHhccccCCCh
Q 012448          240 AE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDD-SH-MFIDESSAKTVISAIDGRLGFLQSQDS  316 (463)
Q Consensus       240 a~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~-~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~  316 (463)
                      +. .+...+.+.+.|++..|+..+.+.. ++-++..+..+.+-+..... .. .++   -.+.+|.+++    ++.+.|+
T Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~A~~~L~nl~~~~~~~~~~~~---~~~~i~~L~~----lL~~~~~  385 (528)
T 4b8j_A          314 VTGDDAQTQCIIDHQALPCLLSLLTQNL-KKSIKKEACWTISNITAGNKDQIQAVI---NAGIIGPLVN----LLQTAEF  385 (528)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTSCHHHHHHHH---HTTCHHHHHH----HHHHSCH
T ss_pred             HcCCHHHHHHHHHhhhHHHHHHHHcCCC-cHHHHHHHHHHHHHHHCCCHHHHHHHH---HCCCHHHHHH----HHhcCCH
Confidence            99 7888899999999999999998532 56667777777777665211 11 112   1244556555    3456789


Q ss_pred             hhhhHHHHHHHhhcCC--HHHHHHHhhcCchhHHHHHHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhh-hhhHHHH
Q 012448          317 DECESALEALGQIGSS--IQGATLLLLCLPPAARHVIDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIIL-NADAEES  392 (463)
Q Consensus       317 ~~~~~A~dtlG~Igss--~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il-~~~~e~~  392 (463)
                      .++..|+|+|++++..  .+....+...  +.+..++.....  .+.. +..++.+|.+|+...  +..... ....+. 
T Consensus       386 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~i~~L~~lL~~--~d~~v~~~al~~L~~l~~~~--~~~~~~~~~~~~~-  458 (528)
T 4b8j_A          386 DIKKEAAWAISNATSGGSHDQIKYLVSE--GCIKPLCDLLIC--PDIRIVTVCLEGLENILKVG--ETDKTLAAGDVNV-  458 (528)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHT--TCHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHH--HHHHHHHTCSCCH-
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHC--CCHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHH--HHhhhcccccccH-
Confidence            9999999999999874  6666666542  345555444322  1222 889999999999743  100000 000111 


Q ss_pred             HHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchh
Q 012448          393 LRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWC  440 (463)
Q Consensus       393 l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg  440 (463)
                      ...++ +..      .-++.+..+. .+.++++..|+.++..++...-+
T Consensus       459 ~~~~i-~~~------~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~  500 (528)
T 4b8j_A          459 FSQMI-DEA------EGLEKIENLQSHDNNEIYEKAVKILEAYWMDEED  500 (528)
T ss_dssp             HHHHH-HHT------THHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred             HHHHH-HHC------CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            23333 322      3366777788 89999999999999999877554

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.82  E-value=8.7e-18  Score=172.21  Aligned_cols=400  Identities=16%  Similarity=0.092  Sum_probs=286.8

Q ss_pred             CCChHHHHHHhhhhccCCCCCChHHHHHHHhc-CChHHHHHccccCCCCcchHHHHHHHHHHHhccccc--c-chhhchH
Q 012448            7 MDDSNQLLDSASDFAYHPGVQNDAAAKKFLDR-FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG--A-SLIPHYM   82 (463)
Q Consensus         7 ~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~-~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~--~-~l~~~~~   82 (463)
                      .+|+..-..++..+.+.-....+...++++.. ..+|.|+.+|++.+ ++..+..++.+|..+......  . .......
T Consensus        31 s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  109 (450)
T 2jdq_A           31 SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNSLQTRIVIQAGAV  109 (450)
T ss_dssp             SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCH
Confidence            45555444444444331100012234567777 88999999998762 377888889999998542111  1 1235679


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC-CchHHHHHHHHHHHHHhCCC-CCc
Q 012448           83 PFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN-GNEEVATASMDAIKKLAGFP-NGI  160 (463)
Q Consensus        83 ~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d-~d~~va~~A~~~L~~lak~~-~~l  160 (463)
                      +.|...|+++++.||+.+++.++.+..+.   .. ..+.+.+.++++.++..+.+ ++..+.+.|+.+|..+++.. +..
T Consensus       110 ~~L~~lL~~~~~~vr~~a~~~L~~l~~~~---~~-~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~  185 (450)
T 2jdq_A          110 PIFIELLSSEFEDVQEQAVWALGNIAGDS---TM-CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP  185 (450)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHccCC---HH-HHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999877   55 66778888999999999995 78999999999999999876 433


Q ss_pred             cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHH
Q 012448          161 DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELA  240 (463)
Q Consensus       161 ~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa  240 (463)
                      ...+-.+.++  .|.+.+.+.++.+|..++..+.+++..+++..+.+.+.|+++.++..+.+ +|.-++.+++..|..++
T Consensus       186 ~~~~~~~~l~--~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~  262 (450)
T 2jdq_A          186 EFAKVSPCLN--VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH-NDYKVVSPALRAVGNIV  262 (450)
T ss_dssp             CGGGTGGGHH--HHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC-SCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHH--HHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC-CchhHHHHHHHHHHHHh
Confidence            2222256777  77778888899999999999999999999999999999999999999998 99999999999999999


Q ss_pred             h-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcccc-ccc-hhcchhhhhhhHHHHHHHhccccCCChh
Q 012448          241 E-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKD-DSH-MFIDESSAKTVISAIDGRLGFLQSQDSD  317 (463)
Q Consensus       241 ~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~-~~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~~  317 (463)
                      . .+...+.+.+.|+++.|+..+.+  .++-+|..++.+.|.+.... ... .+++   .+..|.+++    .+.++++.
T Consensus       263 ~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~~----~l~~~~~~  333 (450)
T 2jdq_A          263 TGDDIQTQVILNCSALQSLLHLLSS--PKESIKKEACWTISNITAGNRAQIQTVID---ANIFPALIS----ILQTAEFR  333 (450)
T ss_dssp             TSCHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHH---TTHHHHHHH----HHHHSCHH
T ss_pred             hCChHHHHHHHHCccHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHH---CCCHHHHHH----HHhcCCHH
Confidence            9 66777888999999999999986  46778889998888887521 111 1121   233555544    44567899


Q ss_pred             hhhHHHHHHHhhcC--CHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhh-hHHHHHH
Q 012448          318 ECESALEALGQIGS--SIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNA-DAEESLR  394 (463)
Q Consensus       318 ~~~~A~dtlG~Igs--s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~-~~e~~l~  394 (463)
                      ++..|+|+||++..  +.+..+.+..  .+.+..+++.+... ....+..++.++.+++...  +....... ..+. +.
T Consensus       334 v~~~a~~~L~~l~~~~~~~~~~~l~~--~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~--~~~~~~~~~~~~~-~~  407 (450)
T 2jdq_A          334 TRKEAAWAITNATSGGSAEQIKYLVE--LGCIKPLCDLLTVM-DSKIVQVALNGLENILRLG--EQEAKRNGTGINP-YC  407 (450)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHH--HTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHH--HHHHHHSCSCCCH-HH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHH--CCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhc--hhhhhccccchhH-HH
Confidence            99999999999975  5666554543  23444444433221 1122888999999998743  21100000 0011 22


Q ss_pred             HHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhc
Q 012448          395 HLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVA  436 (463)
Q Consensus       395 ~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~  436 (463)
                      ..+ +...+      +..+..+. .|-+++|..++.++..+..
T Consensus       408 ~~l-~~~g~------~~~l~~l~~~~~~~v~~~a~~~l~~~~~  443 (450)
T 2jdq_A          408 ALI-EEAYG------LDKIEFLQSHENQEIYQKAFDLIEHYFG  443 (450)
T ss_dssp             HHH-HHHHC------HHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHH-HHcCc------HHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            233 32222      44466667 7888999999999987764

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.79  E-value=5.1e-17  Score=173.03  Aligned_cols=395  Identities=12%  Similarity=0.066  Sum_probs=294.5

Q ss_pred             CCCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc-----hhh
Q 012448            5 LSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS-----LIP   79 (463)
Q Consensus         5 ~~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-----l~~   79 (463)
                      ...+|++..+++...+-..-..-++.-...+++...+|.|+.+|+..+ .+..+..++.+|..+-  .+...     +..
T Consensus        85 l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~-~~~~q~~Aa~aL~nia--~~~~~~~~~vv~~  161 (529)
T 3tpo_A           85 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-CSPIQFESAWALTNIA--SGTSEQTKAVVDG  161 (529)
T ss_dssp             HTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTT-CHHHHHHHHHHHHHHH--TSCHHHHHHHHHT
T ss_pred             hcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHH--cCCHHHHHHHHHC
Confidence            345778877777666543221223344678889999999999997643 4677778888999984  33321     233


Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCch-----HHHHHHHHHHHHHh
Q 012448           80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNE-----EVATASMDAIKKLA  154 (463)
Q Consensus        80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~-----~va~~A~~~L~~la  154 (463)
                      ...+.|+..|.++++.||+.|+|+++.++.++   .. ..+.+.+.|.++.++..+..++.     ++.+.+..+|..++
T Consensus       162 Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~---~~-~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~  237 (529)
T 3tpo_A          162 GAIPAFISLLASPHAHISEQAVWALGNIAGAG---SA-FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  237 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC---HH-HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999877   66 78889999999999999988764     35678899999999


Q ss_pred             CCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHH
Q 012448          155 GFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSIL  233 (463)
Q Consensus       155 k~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnal  233 (463)
                      ++.... ......++++  .|.+++.+.++.++..++..+..++..+.+..+.++++|+++.++..|.+ +|.-++.+++
T Consensus       238 ~~~~~~~~~~~~~~~lp--~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~a~  314 (529)
T 3tpo_A          238 RNKNPAPPLDAVEQILP--TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-TELPIVTPAL  314 (529)
T ss_dssp             CCCTTCCCHHHHHHHHH--HHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC-SCHHHHHHHH
T ss_pred             hcccchhhHHHHhhHHH--HHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC-CChhHHHHHH
Confidence            887533 2222345566  67778888999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcccccc--chhcchhhhhhhHHHHHHHhcc
Q 012448          234 ELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDS--HMFIDESSAKTVISAIDGRLGF  310 (463)
Q Consensus       234 ell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~--~~~~~~~~~k~~p~~l~~~f~~  310 (463)
                      ..|..++. ++...+.+.+.|++..|+.++.+  .++-++..+..+.+-+.....-  ..++   -.+.+|.++.    +
T Consensus       315 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~--~~~~i~~~a~~aL~nl~~~~~~~~~~v~---~~g~i~~Lv~----l  385 (529)
T 3tpo_A          315 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN--PKTNIQKEATWTMSNITAGRQDQIQQVV---NHGLVPFLVG----V  385 (529)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC--SSHHHHHHHHHHHHHHHTSCHHHHHHHH---HTTHHHHHHH----H
T ss_pred             HHHHHHHccchHHHHHHhhcccHHHHHHHHcC--CCHHHHHHHHHHHHHHhcccHHHHHHHH---hcCcHHHHHH----H
Confidence            99999998 78888999999999999999875  4566677787777777652111  1122   1234555555    4


Q ss_pred             ccCCChhhhhHHHHHHHhhcC--CHHHHHHHhhcCchhHHHHHHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhhhh
Q 012448          311 LQSQDSDECESALEALGQIGS--SIQGATLLLLCLPPAARHVIDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIILNA  387 (463)
Q Consensus       311 ~~~~d~~~~~~A~dtlG~Igs--s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il~~  387 (463)
                      +.+.+..++..|+|+|+++.+  +.+....|...  +.+..+++...  ..+.. ...+|++|.+|+...  +  .  ..
T Consensus       386 L~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~--g~i~~L~~LL~--~~d~~i~~~~L~aL~nil~~~--~--~--~~  455 (529)
T 3tpo_A          386 LSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC--GIIEPLMNLLS--AKDTKIIQVILDAISNIFQAA--E--K--LG  455 (529)
T ss_dssp             HHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT--TCHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHH--H--T--TT
T ss_pred             hcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC--cCHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHh--H--h--cc
Confidence            578889999999999999975  67776666652  45555544331  11222 778899999999743  1  0  11


Q ss_pred             hHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhc
Q 012448          388 DAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVA  436 (463)
Q Consensus       388 ~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~  436 (463)
                      +.+. +..++ +...+      ++.|-.+. -+-.||+-.|++++..-+.
T Consensus       456 ~~~~-~~~~i-ee~gg------l~~ie~Lq~~~n~~i~~~A~~iie~yf~  497 (529)
T 3tpo_A          456 ETEK-LSIMI-EECGG------LDKIEALQRHENESVYKASLNLIEKYFS  497 (529)
T ss_dssp             CHHH-HHHHH-HHTTC------HHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred             ChHH-HHHHH-HHCCc------HHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            2333 55454 65433      56666676 7889999999999987643

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.78  E-value=1.6e-16  Score=168.44  Aligned_cols=363  Identities=12%  Similarity=0.112  Sum_probs=275.6

Q ss_pred             hcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---c-hhhchHHHHHHhhcCC-CHHHHHHHHHHHHHHHhCC
Q 012448           37 DRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---S-LIPHYMPFVQVGLTAD-SHSVKRLACKTVTCLLEDS  111 (463)
Q Consensus        37 ~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~-l~~~~~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~  111 (463)
                      -...++.|+..|++.+  +..+..++..|+++++.....   . ....+.+.|+..|.++ ++.||..+++.++.+..+.
T Consensus        85 ~~~~i~~lv~~L~s~~--~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~  162 (530)
T 1wa5_B           85 LQQELPQMTQQLNSDD--MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT  162 (530)
T ss_dssp             --CCHHHHHHHHSCSS--HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             hHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence            4456999999998765  778888888999998653222   1 2346799999999998 9999999999999999876


Q ss_pred             chhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHH
Q 012448          112 DLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVL  190 (463)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~  190 (463)
                         .. ..+.+++.++++.++.++.+++..+...|+.+|..|+...+.. +.++..++++  .|.+++.+.+..+|..++
T Consensus       163 ---~~-~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~--~L~~ll~~~~~~v~~~a~  236 (530)
T 1wa5_B          163 ---SA-QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME--PILGLFNSNKPSLIRTAT  236 (530)
T ss_dssp             ---HH-HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH--HHHHGGGSCCHHHHHHHH
T ss_pred             ---HH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHH--HHHHHhccCCHHHHHHHH
Confidence               55 6678888999999999999999999999999999999886544 5667778888  787788788889999999


Q ss_pred             HHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccch
Q 012448          191 SLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATET  269 (463)
Q Consensus       191 el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dp  269 (463)
                      .++.+++.............|+++.++..+.+ +|.-++.+++..|..|+. .+...+.+.+.|++..|+..+.+  .++
T Consensus       237 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~--~~~  313 (530)
T 1wa5_B          237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH--EST  313 (530)
T ss_dssp             HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC--SCH
T ss_pred             HHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC--CCh
Confidence            99999997752222344557999999999999 999999999999999998 67788999999999999999975  567


Q ss_pred             hhhhhhhhHhhhhccccc-cc-hhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhcCchh
Q 012448          270 ILRSRAIMISGRLLSKDD-SH-MFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLCLPPA  346 (463)
Q Consensus       270 l~r~~aili~g~i~~f~~-~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~~  346 (463)
                      -++.+++.+.|.+..... .. .++   -.+..|.++.    ++.++++.++..|+|+||.|+. +.+..+.+..  .+.
T Consensus       314 ~v~~~a~~~L~~l~~~~~~~~~~~~---~~~~l~~L~~----lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~--~~~  384 (530)
T 1wa5_B          314 LVQTPALRAVGNIVTGNDLQTQVVI---NAGVLPALRL----LLSSPKENIKKEACWTISNITAGNTEQIQAVID--ANL  384 (530)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHH---HTTHHHHHHH----HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTC
T ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHH---HcchHHHHHH----HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCC
Confidence            778888888888775211 11 111   1233444443    5677789999999999999997 6666665554  345


Q ss_pred             HHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHH
Q 012448          347 ARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRL  425 (463)
Q Consensus       347 ~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~  425 (463)
                      +..++..+.+ .....|..+..+|+++.......        .+ ....++ +       ..-+..+..++ .+.|++|.
T Consensus       385 l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~--------~~-~~~~l~-~-------~~~l~~L~~ll~~~~~~v~~  446 (530)
T 1wa5_B          385 IPPLVKLLEV-AEYKTKKEACWAISNASSGGLQR--------PD-IIRYLV-S-------QGCIKPLCDLLEIADNRIIE  446 (530)
T ss_dssp             HHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTTTC--------TH-HHHHHH-H-------TTCHHHHHHHTTTCCHHHHH
T ss_pred             HHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCCCc--------HH-HHHHHH-H-------CCCHHHHHHHHhCCCHHHHH
Confidence            6666655432 11122888999999998643110        01 122222 2       23566777777 78999999


Q ss_pred             HHHHHHHHhhcC
Q 012448          426 AGYRMITGLVAR  437 (463)
Q Consensus       426 A~~~~l~~l~~~  437 (463)
                      .++..|..++..
T Consensus       447 ~al~aL~~l~~~  458 (530)
T 1wa5_B          447 VTLDALENILKM  458 (530)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988864

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.77  E-value=9.9e-17  Score=170.30  Aligned_cols=395  Identities=12%  Similarity=0.065  Sum_probs=292.2

Q ss_pred             CCCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc-----hhh
Q 012448            5 LSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS-----LIP   79 (463)
Q Consensus         5 ~~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-----l~~   79 (463)
                      +..+|++.-++++..|-.--..-.+.-..++++...+|.|+.+|+.. +.+..+..++-+|..+  +.+..+     +..
T Consensus        66 l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~-~~~~lq~~Aa~aL~ni--as~~~e~~~~vv~~  142 (510)
T 3ul1_B           66 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-DCSPIQFESAWALTNI--ASGTSEQTKAVVDG  142 (510)
T ss_dssp             HTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT-TCHHHHHHHHHHHHHH--HTSCHHHHHHHHHT
T ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC-CCHHHHHHHHHHHHHH--hcCCHHHHHHHHHC
Confidence            45678887777765543211111222357788888999999999754 3467777888899998  333322     233


Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCch-----HHHHHHHHHHHHHh
Q 012448           80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNE-----EVATASMDAIKKLA  154 (463)
Q Consensus        80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~-----~va~~A~~~L~~la  154 (463)
                      ...+.|+..|.++++.||+-|+|++++++.+.   .. ..+.+.+.|.++.++..+..++.     .+.+.+..+|..++
T Consensus       143 GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~---~~-~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~  218 (510)
T 3ul1_B          143 GAIPAFISLLASPHAHISEQAVWALGNIAGDG---SA-FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  218 (510)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC---HH-HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999887   66 78899999999999999988764     35678899999999


Q ss_pred             CCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHH
Q 012448          155 GFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSIL  233 (463)
Q Consensus       155 k~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnal  233 (463)
                      ++.... ....-.++++  .|.+++.+.++.++..++.++.+++..+.+..+.+.++|+++.++..|.+ +|.-++.+++
T Consensus       219 ~~~~~~~~~~~~~~~lp--~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~al  295 (510)
T 3ul1_B          219 RNKNPAPPLDAVEQILP--TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-TELPIVTPAL  295 (510)
T ss_dssp             CCCSSCCCHHHHHHHHH--HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC-SCHHHHHHHH
T ss_pred             hcccchhHHHHHHhHHH--HHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC-CChhhhhHHH
Confidence            876533 2222345566  67778888999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcccccc--chhcchhhhhhhHHHHHHHhcc
Q 012448          234 ELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDS--HMFIDESSAKTVISAIDGRLGF  310 (463)
Q Consensus       234 ell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~--~~~~~~~~~k~~p~~l~~~f~~  310 (463)
                      ..|..++. ++...+.+.+.|++..|+.++.+  .++-++..+..+.+-+.....-  ..++   -.+.+|.+++    +
T Consensus       296 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~--~~~~v~~~A~~aL~nl~a~~~~~~~~v~---~~g~i~~Lv~----l  366 (510)
T 3ul1_B          296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN--PKTNIQKEATWTMSNITAGRQDQIQQVV---NHGLVPFLVG----V  366 (510)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHH---HTTHHHHHHH----H
T ss_pred             HHHHHhhcCCHHHHHHHhhccchHHHHHHhcC--CCHHHHHHHHHHHHHHHcCcHHHHHHHH---hcCCHHHHHH----H
Confidence            99999988 77888999999999999998875  4455677777777776652111  1112   1244555555    4


Q ss_pred             ccCCChhhhhHHHHHHHhhcC--CHHHHHHHhhcCchhHHHHHHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhhhh
Q 012448          311 LQSQDSDECESALEALGQIGS--SIQGATLLLLCLPPAARHVIDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIILNA  387 (463)
Q Consensus       311 ~~~~d~~~~~~A~dtlG~Igs--s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il~~  387 (463)
                      +.+.|..++..|.|+|+++.+  +.+....|.+  .+.+..+++...  ..+.. ...+|++|.+|+...  +  .  ..
T Consensus       367 L~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~--~g~i~~L~~LL~--~~d~~i~~~~L~aL~nil~~~--~--~--~~  436 (510)
T 3ul1_B          367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH--CGIIEPLMNLLS--AKDTKIIQVILDAISNIFQAA--E--K--LG  436 (510)
T ss_dssp             HHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH--TTCHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHH--H--T--TT
T ss_pred             HcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH--CCCHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHh--H--h--cc
Confidence            577899999999999999976  6676666655  245555544321  11222 778999999999743  1  0  12


Q ss_pred             hHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhc
Q 012448          388 DAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVA  436 (463)
Q Consensus       388 ~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~  436 (463)
                      +.+. +..++ +...+      ++.|-.+. -+-++|+-.|+.++..-+.
T Consensus       437 ~~~~-~~~~i-ee~gg------l~~ie~Lq~~~n~~i~~~A~~iie~yf~  478 (510)
T 3ul1_B          437 ETEK-LSIMI-EECGG------LDKIEALQRHENESVYKASLNLIEKYFS  478 (510)
T ss_dssp             CHHH-HHHHH-HHTTH------HHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred             chHH-HHHHH-HHcCc------HHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            2333 55455 65444      66777777 7899999999999987654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.76  E-value=4.8e-16  Score=159.25  Aligned_cols=357  Identities=12%  Similarity=0.097  Sum_probs=267.4

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---chh-h-chHHHHHHhhcCC-CHHHHHHHHHHHHHHHhCCch
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---SLI-P-HYMPFVQVGLTAD-SHSVKRLACKTVTCLLEDSDL  113 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~l~-~-~~~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~~~  113 (463)
                      .+|.|+..|++.+  +..+..++..|++++......   ... . .+.+.|...|+++ ++.||..+++.++.+..+.  
T Consensus        21 ~l~~l~~~l~s~~--~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~--   96 (450)
T 2jdq_A           21 ITSDMIEMIFSKS--PEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN--   96 (450)
T ss_dssp             -CHHHHHHHHSSC--HHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC--
T ss_pred             cHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC--
Confidence            4899999998765  778888999999987532222   222 2 6799999999999 9999999999999999876  


Q ss_pred             hHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhc-CCchhHHHHHH
Q 012448          114 EASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQ-CSSLGRVRVLS  191 (463)
Q Consensus       114 ~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~-~~~~vR~Rv~e  191 (463)
                       .. ..+.+.+.++++.++..+.+++..+...|+.+|..++...+.. +.++..+.++  .|.+.+.+ .+..+|..+..
T Consensus        97 -~~-~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~--~L~~~l~~~~~~~v~~~a~~  172 (450)
T 2jdq_A           97 -SL-QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILP--PLLQLFSKQNRLTMTRNAVW  172 (450)
T ss_dssp             -HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH--HHHHHTTSCCCHHHHHHHHH
T ss_pred             -HH-HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHH--HHHHHhcCCCCHHHHHHHHH
Confidence             44 5566778899999999999999999999999999999887544 5666778887  77767664 68899999999


Q ss_pred             HHHHHHhcC-HHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccch
Q 012448          192 LIVKLFSVS-RSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATET  269 (463)
Q Consensus       192 l~v~ia~~S-~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dp  269 (463)
                      ++.+++..+ +......+ .++++.++.-+.+ +|.-++.+++..|..++. .+...+.+...|++..|+..+.+  .|+
T Consensus       173 ~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~  248 (450)
T 2jdq_A          173 ALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFV-SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH--NDY  248 (450)
T ss_dssp             HHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC--SCH
T ss_pred             HHHHHhCCCCCCCCHHHH-HHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC--Cch
Confidence            999999765 32212222 6899999999999 999999999999999999 66788899999999999999974  567


Q ss_pred             hhhhhhhhHhhhhccccc-cch-hcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhcCchh
Q 012448          270 ILRSRAIMISGRLLSKDD-SHM-FIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLCLPPA  346 (463)
Q Consensus       270 l~r~~aili~g~i~~f~~-~~~-~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~~  346 (463)
                      -++..++.+.|.+..... ... +++   .+..|.++    +++.++++.++..|+|+||+|+. +.+..+.+..  .+.
T Consensus       249 ~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~----~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~--~~~  319 (450)
T 2jdq_A          249 KVVSPALRAVGNIVTGDDIQTQVILN---CSALQSLL----HLLSSPKESIKKEACWTISNITAGNRAQIQTVID--ANI  319 (450)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHT---TTHHHHHH----HHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTH
T ss_pred             hHHHHHHHHHHHHhhCChHHHHHHHH---CccHHHHH----HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCC
Confidence            778888888887765211 111 111   13344444    35677889999999999999997 6677666654  245


Q ss_pred             HHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHH
Q 012448          347 ARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRL  425 (463)
Q Consensus       347 ~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~  425 (463)
                      +..+++...+. ....|..+..+++++..... +         + ....++ +.       .-+..+..++ .+.+++|.
T Consensus       320 l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~-~---------~-~~~~l~-~~-------~~i~~L~~ll~~~~~~v~~  379 (450)
T 2jdq_A          320 FPALISILQTA-EFRTRKEAAWAITNATSGGS-A---------E-QIKYLV-EL-------GCIKPLCDLLTVMDSKIVQ  379 (450)
T ss_dssp             HHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCC-H---------H-HHHHHH-HH-------TCHHHHHHGGGSSCHHHHH
T ss_pred             HHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCC-H---------H-HHHHHH-HC-------CCHHHHHHHhcCCCHHHHH
Confidence            55555554431 11227888999999886321 1         1 122222 21       3456677777 78899999


Q ss_pred             HHHHHHHHhhcC
Q 012448          426 AGYRMITGLVAR  437 (463)
Q Consensus       426 A~~~~l~~l~~~  437 (463)
                      .++..|..++..
T Consensus       380 ~a~~aL~~l~~~  391 (450)
T 2jdq_A          380 VALNGLENILRL  391 (450)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999888864

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.76  E-value=3.4e-16  Score=166.20  Aligned_cols=358  Identities=12%  Similarity=0.116  Sum_probs=268.1

Q ss_pred             CChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---c-hhhchHHHHHHhhcCC-CHHHHHHHHHHHHHHHhCCch
Q 012448           39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---S-LIPHYMPFVQVGLTAD-SHSVKRLACKTVTCLLEDSDL  113 (463)
Q Consensus        39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~-l~~~~~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~~~  113 (463)
                      .-++.|+..|++++  ++..-.++.-++++++....+   . +.....+.|+..|++. ++.|+.-|+|+|++++.++  
T Consensus        57 ~~i~~~v~~l~s~d--~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~--  132 (510)
T 3ul1_B           57 WSVEDIVKGINSNN--LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT--  132 (510)
T ss_dssp             CCHHHHHHHHTSSC--HHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC--
T ss_pred             hhHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC--
Confidence            45899999999877  777777788999998765432   2 3345799999999755 5899999999999999877  


Q ss_pred             hHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCC-----chhHH
Q 012448          114 EASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCS-----SLGRV  187 (463)
Q Consensus       114 ~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~-----~~vR~  187 (463)
                       .. -.+.+++.|.+|.++.+|.+++..|...|+.+|.+|+.+.+.. +.+...+.++  .|..++...+     ..+++
T Consensus       133 -~e-~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~--~Ll~lL~~~~~~~~~~~~~~  208 (510)
T 3ul1_B          133 -SE-QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAID--PLLALLAVPDLSTLACGYLR  208 (510)
T ss_dssp             -HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH--HHHHHTCSSCGGGSCHHHHH
T ss_pred             -HH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChH--HHHHHHHhccchhhhHHHHH
Confidence             66 7889999999999999999999999999999999999988765 5777888887  7775665443     23466


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccc
Q 012448          188 RVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSA  266 (463)
Q Consensus       188 Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~  266 (463)
                      .+...+.++++............|+++.+...+.+ +|.-++.+++..|..|+. .+...+.+.+.|++..|++++..  
T Consensus       209 ~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~-~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--  285 (510)
T 3ul1_B          209 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--  285 (510)
T ss_dssp             HHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC--
T ss_pred             HHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC--
Confidence            77788888888765555555557899999999999 999999999999999999 66777889999999999999975  


Q ss_pred             cchhhhhhhhhHhhhhccccccc--hhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhcC
Q 012448          267 TETILRSRAIMISGRLLSKDDSH--MFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLCL  343 (463)
Q Consensus       267 ~dpl~r~~aili~g~i~~f~~~~--~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~  343 (463)
                      .++-++.+++.+.|.+.....-.  .+++   .+.+|.    +..++.++++.++..|.|+|++|+. +.+.++.+... 
T Consensus       286 ~~~~v~~~al~aL~nl~~~~~~~~~~i~~---~g~l~~----L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~-  357 (510)
T 3ul1_B          286 TELPIVTPALRAIGNIVTGTDEQTQKVID---AGALAV----FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH-  357 (510)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHH---TTGGGG----CC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT-
T ss_pred             CChhhhhHHHHHHHHhhcCCHHHHHHHhh---ccchHH----HHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhc-
Confidence            45556788888888887632211  1121   122333    3346788999999999999999987 66667777653 


Q ss_pred             chhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHH
Q 012448          344 PPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAE  422 (463)
Q Consensus       344 ~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~e  422 (463)
                       +.+..++..+.. .....|..|.-+++++......          + .+..++ +       ..-+..+.+++ .+.++
T Consensus       358 -g~i~~Lv~lL~~-~~~~v~~~Aa~aL~Nl~~~~~~----------~-~~~~L~-~-------~g~i~~L~~LL~~~d~~  416 (510)
T 3ul1_B          358 -GLVPFLVGVLSK-ADFKTQKEAAWAITNYTSGGTV----------E-QIVYLV-H-------CGIIEPLMNLLSAKDTK  416 (510)
T ss_dssp             -THHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCCH----------H-HHHHHH-H-------TTCHHHHHHGGGCSCHH
T ss_pred             -CCHHHHHHHHcC-CCHHHHHHHHHHHHHHHccCCH----------H-HHHHHH-H-------CCCHHHHHHHhcCCCHH
Confidence             445544444322 1112277888899988763311          1 122233 2       24466777788 88999


Q ss_pred             HHHHHHHHHHHhhc
Q 012448          423 IRLAGYRMITGLVA  436 (463)
Q Consensus       423 lr~A~~~~l~~l~~  436 (463)
                      ++..++..|..|..
T Consensus       417 i~~~~L~aL~nil~  430 (510)
T 3ul1_B          417 IIQVILDAISNIFQ  430 (510)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998887764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.74  E-value=8.1e-16  Score=162.48  Aligned_cols=360  Identities=11%  Similarity=0.087  Sum_probs=272.7

Q ss_pred             cCChHHHHHccccCCCCcchHHHHHHHHHHHhcccc-cc---chhhchHHHHHHhhcCCC-HHHHHHHHHHHHHHHhCCc
Q 012448           38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKY-GA---SLIPHYMPFVQVGLTADS-HSVKRLACKTVTCLLEDSD  112 (463)
Q Consensus        38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~-~~---~l~~~~~~~l~~gL~h~~-~~Vr~Lal~~l~~i~~~~~  112 (463)
                      ...+|.|+..|++.+  +..+..++..|+++++... +.   .......+.|+..|.+++ +.||..+++.++++..+. 
T Consensus        73 ~~~l~~lv~~L~s~~--~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-  149 (528)
T 4b8j_A           73 LESLPAMIGGVYSDD--NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-  149 (528)
T ss_dssp             --CHHHHHHHHTSSC--HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-
T ss_pred             HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-
Confidence            456999999998765  7778888889999976543 21   134467999999999997 999999999999999876 


Q ss_pred             hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHh-hcCCchhHHHHH
Q 012448          113 LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLV-AQCSSLGRVRVL  190 (463)
Q Consensus       113 ~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~-~~~~~~vR~Rv~  190 (463)
                        .. ....+++.|.++.++..+.+++..|...|+.+|..|+...+.. ..+...+.++  .|...+ .+.+..+|..++
T Consensus       150 --~~-~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~--~Ll~lL~~~~~~~v~~~a~  224 (528)
T 4b8j_A          150 --SE-NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALL--PLLAQLNEHTKLSMLRNAT  224 (528)
T ss_dssp             --HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHH--HHHHTCCTTCCHHHHHHHH
T ss_pred             --HH-HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHH--HHHHHHhcCCCHHHHHHHH
Confidence              55 6778888999999999999999999999999999999876644 5677778887  777566 467889999999


Q ss_pred             HHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccch
Q 012448          191 SLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATET  269 (463)
Q Consensus       191 el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dp  269 (463)
                      .++.+++...+.. ......|+++.++..|.+ +|.-++.+++..|..++. .+...+.+.+.|++..|+..+.+.  ++
T Consensus       225 ~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~  300 (528)
T 4b8j_A          225 WTLSNFCRGKPQP-SFEQTRPALPALARLIHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP--SP  300 (528)
T ss_dssp             HHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS--CH
T ss_pred             HHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC--Ch
Confidence            9999999875332 223347999999999999 999999999999999999 555568899999999999999864  56


Q ss_pred             hhhhhhhhHhhhhccccc-cc-hhcchhhhhhhHHHHHHHhccccCC-ChhhhhHHHHHHHhhcC-CHHHHHHHhhcCch
Q 012448          270 ILRSRAIMISGRLLSKDD-SH-MFIDESSAKTVISAIDGRLGFLQSQ-DSDECESALEALGQIGS-SIQGATLLLLCLPP  345 (463)
Q Consensus       270 l~r~~aili~g~i~~f~~-~~-~~~~~~~~k~~p~~l~~~f~~~~~~-d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~  345 (463)
                      -++.+++.+.|.+..... .. .+++   .+..|.++.    ++.++ ++.++..|+|+||+|+. +.+..+.+..  .+
T Consensus       301 ~v~~~a~~~L~nl~~~~~~~~~~~~~---~~~l~~L~~----lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~--~~  371 (528)
T 4b8j_A          301 SVLIPALRTVGNIVTGDDAQTQCIID---HQALPCLLS----LLTQNLKKSIKKEACWTISNITAGNKDQIQAVIN--AG  371 (528)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHT---TTHHHHHHH----HHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHH--TT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHH---hhhHHHHHH----HHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHH--CC
Confidence            678888888888876211 11 1121   233555554    34566 89999999999999997 5555555554  24


Q ss_pred             hHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHH
Q 012448          346 AARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIR  424 (463)
Q Consensus       346 ~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr  424 (463)
                      .+..+++.+... ....|..++.+|+++..... +          +....++ +       ..-+..+..++ .+.++++
T Consensus       372 ~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~-~----------~~~~~l~-~-------~~~i~~L~~lL~~~d~~v~  431 (528)
T 4b8j_A          372 IIGPLVNLLQTA-EFDIKKEAAWAISNATSGGS-H----------DQIKYLV-S-------EGCIKPLCDLLICPDIRIV  431 (528)
T ss_dssp             CHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSC-H----------HHHHHHH-H-------TTCHHHHHHGGGCSCHHHH
T ss_pred             CHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCC-H----------HHHHHHH-H-------CCCHHHHHHHHcCCCHHHH
Confidence            556555554432 12238889999999886421 1          1122222 2       24466777888 8999999


Q ss_pred             HHHHHHHHHhhcCc
Q 012448          425 LAGYRMITGLVARP  438 (463)
Q Consensus       425 ~A~~~~l~~l~~~~  438 (463)
                      ..++..|..|+...
T Consensus       432 ~~al~~L~~l~~~~  445 (528)
T 4b8j_A          432 TVCLEGLENILKVG  445 (528)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998754

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.74  E-value=2.1e-15  Score=160.63  Aligned_cols=359  Identities=12%  Similarity=0.122  Sum_probs=268.4

Q ss_pred             cCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---c-hhhchHHHHHHhhc-CCCHHHHHHHHHHHHHHHhCCc
Q 012448           38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---S-LIPHYMPFVQVGLT-ADSHSVKRLACKTVTCLLEDSD  112 (463)
Q Consensus        38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~-l~~~~~~~l~~gL~-h~~~~Vr~Lal~~l~~i~~~~~  112 (463)
                      +..++.++..+++++  ++..-.++..++++++....+   . +...+.+.|+..|. +.++.++.-|+|+++.++.++ 
T Consensus        75 ~~~l~~lv~~l~s~d--~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-  151 (529)
T 3tpo_A           75 NWSVEDIVKGINSNN--LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-  151 (529)
T ss_dssp             SCCHHHHHHHHTSSC--HHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-
T ss_pred             HHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-
Confidence            456899999999877  666667777899988655432   2 33457899999996 556999999999999999887 


Q ss_pred             hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCC-----chhH
Q 012448          113 LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCS-----SLGR  186 (463)
Q Consensus       113 ~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~-----~~vR  186 (463)
                        .. -.+.+++.|.+|.++.++.+++..+...|+.+|..|+.+.+.. +.+...++++  .|..++...+     ..++
T Consensus       152 --~~-~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~--~Ll~lL~~~~~~~~~~~~~  226 (529)
T 3tpo_A          152 --SE-QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAID--PLLALLAVPDLSTLACGYL  226 (529)
T ss_dssp             --HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH--HHHHTTCSSCGGGSCHHHH
T ss_pred             --HH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcH--HHHHHHhccchhHhHHHHH
Confidence              56 7788999999999999999999999999999999999987765 5777888887  7775554433     2345


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhccc
Q 012448          187 VRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNS  265 (463)
Q Consensus       187 ~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~  265 (463)
                      ..+...+.++++............|+++.+...+.+ +|.-++.+++..|..++. .+...+.+...|++..|++++.. 
T Consensus       227 ~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~-  304 (529)
T 3tpo_A          227 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-  304 (529)
T ss_dssp             HHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcC-CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC-
Confidence            677788888888776555555667999999999999 999999999999999999 66677888999999999999975 


Q ss_pred             ccchhhhhhhhhHhhhhccccccc--hhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhc
Q 012448          266 ATETILRSRAIMISGRLLSKDDSH--MFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLC  342 (463)
Q Consensus       266 ~~dpl~r~~aili~g~i~~f~~~~--~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~  342 (463)
                       .++-++.+++.+.|-+.....-.  .++   -.+..|.++.    ++.++++.++..|+|+|++|+. +.+..+.+.. 
T Consensus       305 -~~~~v~~~a~~aL~nl~~~~~~~~~~i~---~~g~l~~L~~----LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~-  375 (529)
T 3tpo_A          305 -TELPIVTPALRAIGNIVTGTDEQTQKVI---DAGALAVFPS----LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN-  375 (529)
T ss_dssp             -SCHHHHHHHHHHHHHHTTSCHHHHHHHH---HTTGGGGHHH----HTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH-
T ss_pred             -CChhHHHHHHHHHHHHHccchHHHHHHh---hcccHHHHHH----HHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHh-
Confidence             46667788888888887632211  112   1233444443    5678899999999999999998 6666666665 


Q ss_pred             CchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCH
Q 012448          343 LPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAA  421 (463)
Q Consensus       343 ~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~  421 (463)
                       .+.+..++..... .....|..|.-||+++......          + .+..++ +       ..-+..+..++ -+.+
T Consensus       376 -~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nl~~~~~~----------~-~~~~l~-~-------~g~i~~L~~LL~~~d~  434 (529)
T 3tpo_A          376 -HGLVPFLVGVLSK-ADFKTQKAAAWAITNYTSGGTV----------E-QIVYLV-H-------CGIIEPLMNLLSAKDT  434 (529)
T ss_dssp             -TTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSCH----------H-HHHHHH-H-------TTCHHHHHHGGGCSCH
T ss_pred             -cCcHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCH----------H-HHHHHH-H-------CcCHHHHHHHhcCCCH
Confidence             2445544444322 1112277788899888763311          1 122233 2       23456677788 8899


Q ss_pred             HHHHHHHHHHHHhhc
Q 012448          422 EIRLAGYRMITGLVA  436 (463)
Q Consensus       422 elr~A~~~~l~~l~~  436 (463)
                      +++..++..|..|..
T Consensus       435 ~i~~~~L~aL~nil~  449 (529)
T 3tpo_A          435 KIIQVILDAISNIFQ  449 (529)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998888763

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.72  E-value=4.2e-15  Score=155.65  Aligned_cols=381  Identities=11%  Similarity=0.072  Sum_probs=283.2

Q ss_pred             HhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-chh--hchHHHHHHhhcC-CCHHHHHHHHHHHHHHHhCC
Q 012448           36 LDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-SLI--PHYMPFVQVGLTA-DSHSVKRLACKTVTCLLEDS  111 (463)
Q Consensus        36 ~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-~l~--~~~~~~l~~gL~h-~~~~Vr~Lal~~l~~i~~~~  111 (463)
                      +...-+|.|+..|++.+  +..++.++.+|..+-...... .+.  +...+.|...|.+ +++.+|..+++.+.++..+.
T Consensus        14 ~~~~~i~~Lv~lL~~~~--~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~   91 (529)
T 1jdh_A           14 LATRAIPELTKLLNDED--QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR   91 (529)
T ss_dssp             ---CHHHHHHHHHTCSC--HHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred             hhHhhHHHHHHHhCCCC--HHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence            34556899999998765  788889999999884322211 122  3578888888875 49999999999999986653


Q ss_pred             chhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHH
Q 012448          112 DLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVL  190 (463)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~  190 (463)
                          . ..+.+.+.|.++.++..+.+++..+...|+.+|..++...+.. +.+.+.+.++  .|.+.+.+.+..+|..+.
T Consensus        92 ----~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~--~L~~ll~~~~~~~~~~~~  164 (529)
T 1jdh_A           92 ----E-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ--KMVALLNKTNVKFLAITT  164 (529)
T ss_dssp             ----H-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHH--HHHHGGGCCCHHHHHHHH
T ss_pred             ----h-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHH--HHHHHHhcCCHHHHHHHH
Confidence                3 4566777899999999999999999999999999999886544 5566778888  888788888888888888


Q ss_pred             HHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchh
Q 012448          191 SLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETI  270 (463)
Q Consensus       191 el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl  270 (463)
                      .++..++..+++.-..+.+.|.++.++.-+++.++.-.+..+..+|..++..+.....+.+.|+++.|++.+.+.  ++-
T Consensus       165 ~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~--~~~  242 (529)
T 1jdh_A          165 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQR  242 (529)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS--CHH
T ss_pred             HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC--ChH
Confidence            899999999999999999999999999999885677778889999999999999999999999999999999764  554


Q ss_pred             hhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCC-HHHHHHHhhcCchhHHH
Q 012448          271 LRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSS-IQGATLLLLCLPPAARH  349 (463)
Q Consensus       271 ~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss-~eGk~~L~~~~~~~~~~  349 (463)
                      ++..+.-+.+.+.....-...    .....|.++    +++.+.|+..+..|.|+|+.++.. .++++.+.+.  +.+..
T Consensus       243 ~~~~a~~~L~~l~~~~~~~~~----~~~~i~~L~----~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--~~v~~  312 (529)
T 1jdh_A          243 LVQNCLWTLRNLSDAATKQEG----MEGLLGTLV----QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV--GGIEA  312 (529)
T ss_dssp             HHHHHHHHHHHHHTTCTTCSC----CHHHHHHHH----HHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHT--THHHH
T ss_pred             HHHHHHHHHHHHhcCChhhHH----HHhHHHHHH----HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc--CChHH
Confidence            454555444444431111100    123344444    456789999999999999999984 5688877763  46666


Q ss_pred             HHHHHHhhccc-hhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCC-HHHHHH
Q 012448          350 VIDAAFDRQGH-GKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQA-AEIRLA  426 (463)
Q Consensus       350 ~l~~~~~~~~~-~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF-~elr~A  426 (463)
                      +++...+.-.+ ..+..++.+|++|....  +       +++. .+..+    ..   ...+..+..++ .+. +++|.+
T Consensus       313 L~~ll~~~~~~~~v~~~a~~~L~nl~~~~--~-------~~~~-~~~~i----~~---~~~i~~L~~lL~~~~~~~v~~~  375 (529)
T 1jdh_A          313 LVRTVLRAGDREDITEPAICALRHLTSRH--Q-------EAEM-AQNAV----RL---HYGLPVVVKLLHPPSHWPLIKA  375 (529)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTSSS--T-------THHH-HHHHH----HH---TTCHHHHHHTTSTTCCHHHHHH
T ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHHcCC--c-------hHHH-HHHHH----HH---cCChhHHHHHhccccchHHHHH
Confidence            66665543322 23889999999996532  1       1121 22122    11   13366777877 666 699999


Q ss_pred             HHHHHHHhhcCchhHHHhhhccchhHhhc
Q 012448          427 GYRMITGLVARPWCLMELCSKQEIINTVT  455 (463)
Q Consensus       427 ~~~~l~~l~~~~Wg~~~i~~~~gfie~ll  455 (463)
                      +...+..++..+..+..+.. .|++..|+
T Consensus       376 a~~~l~nl~~~~~~~~~~~~-~~~i~~L~  403 (529)
T 1jdh_A          376 TVGLIRNLALCPANHAPLRE-QGAIPRLV  403 (529)
T ss_dssp             HHHHHHHHTTSGGGHHHHHH-TTHHHHHH
T ss_pred             HHHHHHHHhcChhhhHHHHH-cCCHHHHH
Confidence            99999999999998877765 45655554

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.68  E-value=1.7e-15  Score=143.88  Aligned_cols=234  Identities=15%  Similarity=0.101  Sum_probs=204.2

Q ss_pred             cCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchh
Q 012448           38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLE  114 (463)
Q Consensus        38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~  114 (463)
                      ..+++.++..|++.+  ++.+..++.+|++++......   .......+.|...|+++++.||..+++.++.+..+.   
T Consensus        11 ~~~~~~~~~~L~s~~--~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---   85 (252)
T 4db8_A           11 GSELPQMTQQLNSDD--MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG---   85 (252)
T ss_dssp             TCSHHHHHHHHHSSC--SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC---
T ss_pred             cchHHHHHHHHcCCC--HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC---
Confidence            467899999999877  788889999998877642211   233457899999999999999999999999999866   


Q ss_pred             HHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHH
Q 012448          115 ASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLI  193 (463)
Q Consensus       115 ~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~  193 (463)
                      .. ..+.+.+.|.++.++..+.+++..+...|+.+|..++..++.. +.+...++++  .|.+.+.+.+..+|..++.++
T Consensus        86 ~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~--~L~~lL~~~~~~v~~~a~~~L  162 (252)
T 4db8_A           86 NE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP--ALVQLLSSPNEQILQEALWAL  162 (252)
T ss_dssp             HH-HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH--HHHHGGGCSCHHHHHHHHHHH
T ss_pred             HH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHH--HHHHHHhCCCHHHHHHHHHHH
Confidence            55 6778888999999999999999999999999999999988766 7788888988  888788888999999999999


Q ss_pred             HHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhh
Q 012448          194 VKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILR  272 (463)
Q Consensus       194 v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r  272 (463)
                      .+++..+++..+.+.+.|.++.++..+++ +|.-++.+++..|..++. .+...+.+.+.|+++.|++.+.+  .||-++
T Consensus       163 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~  239 (252)
T 4db8_A          163 SNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH--ENEKIQ  239 (252)
T ss_dssp             HHHTTSCHHHHHHHHHTTCHHHHHHGGGC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC--SSSHHH
T ss_pred             HHHHcCChHHHHHHHHCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC--CCHHHH
Confidence            99999999999999999999999999999 899999999999999997 88889999999999999999975  466667


Q ss_pred             hhhhhHhhhh
Q 012448          273 SRAIMISGRL  282 (463)
Q Consensus       273 ~~aili~g~i  282 (463)
                      ..+..+.+-+
T Consensus       240 ~~A~~~L~~l  249 (252)
T 4db8_A          240 KEAQEALEKL  249 (252)
T ss_dssp             HTHHHHHHTT
T ss_pred             HHHHHHHHHH
Confidence            6666655544

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.65  E-value=2.2e-13  Score=148.19  Aligned_cols=380  Identities=12%  Similarity=0.062  Sum_probs=281.1

Q ss_pred             HhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-ch--hhchHHHHHHhhcCC-CHHHHHHHHHHHHHHHhCC
Q 012448           36 LDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-SL--IPHYMPFVQVGLTAD-SHSVKRLACKTVTCLLEDS  111 (463)
Q Consensus        36 ~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-~l--~~~~~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~  111 (463)
                      ++.--+|.|+..|++.+  +..++.++.+|..+-...... .+  .+...+.|+..|.+. ++.||..++..+..+..+.
T Consensus        11 ~~~g~i~~Lv~lL~~~~--~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~   88 (644)
T 2z6h_A           11 LATRAIPELTKLLNDED--QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR   88 (644)
T ss_dssp             -CTTTHHHHHHHHTCSC--HHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred             hhhchHHHHHHHHcCCC--HHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence            56677999999998765  788899999999984322211 12  235688999999875 8999999999999876654


Q ss_pred             chhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHH
Q 012448          112 DLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVL  190 (463)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~  190 (463)
                          . ....+.+.+.++.++.++.+++..+...|+.+|.+++...+.. +.+...+.++  .|.+.+.+.+..++..+.
T Consensus        89 ----~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~--~Lv~lL~~~~~~~~~~a~  161 (644)
T 2z6h_A           89 ----E-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ--KMVALLNKTNVKFLAITT  161 (644)
T ss_dssp             ----H-HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHH--HHHHGGGCCCHHHHHHHH
T ss_pred             ----h-hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChH--HHHHHHCcCCHHHHHHHH
Confidence                3 4566777899999999999999999999999999999876544 5666788888  888788888887777778


Q ss_pred             HHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchh
Q 012448          191 SLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETI  270 (463)
Q Consensus       191 el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl  270 (463)
                      .++.+++..+++.-..+.+.|.++.++..+.+.++.-++.+++.+|..|+..+...+++.+.|++..|+..+.+.  ++-
T Consensus       162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~--~~~  239 (644)
T 2z6h_A          162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQR  239 (644)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS--CHH
T ss_pred             HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC--CHH
Confidence            899999998899999999999999999999985567778899999999999999999999999999999999764  444


Q ss_pred             hhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCC-HHHHHHHhhcCchhHHH
Q 012448          271 LRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSS-IQGATLLLLCLPPAARH  349 (463)
Q Consensus       271 ~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss-~eGk~~L~~~~~~~~~~  349 (463)
                      ++..++-+.+.+.....-...    .....|.    +..++.+.|+.++..|.|+|+.++.. .+.++.+.+.  +.+..
T Consensus       240 ~~~~a~~~L~nL~~~~~~~~~----~~~~i~~----Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~--g~v~~  309 (644)
T 2z6h_A          240 LVQNCLWTLRNLSDAATKQEG----MEGLLGT----LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV--GGIEA  309 (644)
T ss_dssp             HHHHHHHHHHHHGGGCTTCCS----CHHHHHH----HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHH
T ss_pred             HHHHHHHHHHHHhhcchhhhh----hhhHHHH----HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc--CCHHH
Confidence            444455444444331110100    1232344    34456788999999999999999984 5677777763  46666


Q ss_pred             HHHHHHhhcc-chhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cC-CHHHHHH
Q 012448          350 VIDAAFDRQG-HGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQ-AAEIRLA  426 (463)
Q Consensus       350 ~l~~~~~~~~-~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qp-F~elr~A  426 (463)
                      ++..+.+.-. ...+..++.+|++|..... +        .+. ....+.+       ..-...+..++ .+ -+++|.+
T Consensus       310 Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~-~--------~~~-~q~~v~~-------~~~l~~L~~lL~~~~~~~v~~~  372 (644)
T 2z6h_A          310 LVRTVLRAGDREDITEPAICALRHLTSRHQ-E--------AEM-AQNAVRL-------HYGLPVVVKLLHPPSHWPLIKA  372 (644)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTSSST-T--------HHH-HHHHHHH-------TTHHHHHHHTTSTTCCHHHHHH
T ss_pred             HHHHHHccCCcHHHHHHHHHHHHHHhcCCc-h--------HHH-HHHHHHH-------ccChHHHHHHhCccCchHHHHH
Confidence            6666654332 2338889999999976421 1        111 1111101       13356677777 55 3799999


Q ss_pred             HHHHHHHhhcCchhHHHhhhccchhHhh
Q 012448          427 GYRMITGLVARPWCLMELCSKQEIINTV  454 (463)
Q Consensus       427 ~~~~l~~l~~~~Wg~~~i~~~~gfie~l  454 (463)
                      +...|..|+..+..++.+.. .|.+..|
T Consensus       373 a~~~L~nLa~~~~~~~~i~~-~~~i~~L  399 (644)
T 2z6h_A          373 TVGLIRNLALCPANHAPLRE-QGAIPRL  399 (644)
T ss_dssp             HHHHHHHHTTSGGGHHHHHH-TTHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHH-cCCHHHH
Confidence            99999999999888866664 4555444

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.65  E-value=6.2e-15  Score=138.88  Aligned_cols=238  Identities=18%  Similarity=0.164  Sum_probs=200.3

Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC-C
Q 012448           81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN-G  159 (463)
Q Consensus        81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~-~  159 (463)
                      ..+.|...|+++++.+|..+++.++.+..+.   .. ..+.+.+.|+++.++..+.+++..+...|+.+|..++.+.+ .
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~---~~-~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~   78 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGP---AS-AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA   78 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC---HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC---cH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence            3678899999999999999999999999887   55 67788889999999999999999999999999999999855 4


Q ss_pred             ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHH
Q 012448          160 IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYEL  239 (463)
Q Consensus       160 l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eL  239 (463)
                      .+.++..+.++  .|.+.+.+.+..+|..++.++.+++..+++..+.+.+.|.++.++..+++ +|.-++.+++..|..+
T Consensus        79 ~~~~~~~~~i~--~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l  155 (252)
T 4hxt_A           79 IKAIVDAGGVE--VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANI  155 (252)
T ss_dssp             HHHHHHTTHHH--HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHH--HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHH
Confidence            46777888888  88878888999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             Hh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcccc-ccc-hhcchhhhhhhHHHHHHHhccccCCCh
Q 012448          240 AE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKD-DSH-MFIDESSAKTVISAIDGRLGFLQSQDS  316 (463)
Q Consensus       240 a~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~-~~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~  316 (463)
                      +. .+...+.+.+.|+++.|++.+.+  .||-++..++.+.+-+.... +.. .+.   -.+.+|.+    .++++++|+
T Consensus       156 ~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~---~~~~i~~L----~~ll~~~~~  226 (252)
T 4hxt_A          156 ASGPDEAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPTSAIKAIV---DAGGVEVL----QKLLTSTDS  226 (252)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSBHHHHHHHH---HTTHHHHH----HHGGGCSCH
T ss_pred             HcCCHHHHHHHHHCcCHHHHHHHHCC--CCHHHHHHHHHHHHHHHcCCHHHHHHHH---HCCCHHHH----HHHHCCCcH
Confidence            99 66666899999999999999984  56777777777777666521 111 111   12233443    345678899


Q ss_pred             hhhhHHHHHHHhhcCCHH
Q 012448          317 DECESALEALGQIGSSIQ  334 (463)
Q Consensus       317 ~~~~~A~dtlG~Igss~e  334 (463)
                      .++..|+|+|++++....
T Consensus       227 ~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          227 EVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             HHHHHHHHHHHHHHHTCB
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            999999999999987443

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.65  E-value=1.2e-14  Score=136.93  Aligned_cols=233  Identities=15%  Similarity=0.140  Sum_probs=202.3

Q ss_pred             hHHHHHccccCCCCcchHHHHHHHHHHHhcccc-c-cc-hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHH
Q 012448           41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKY-G-AS-LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASC  117 (463)
Q Consensus        41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~-~-~~-l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~  117 (463)
                      +|.|+..|++.+  +..+..++.+|..+..... . .. ......+.|...|+++++.||+.+++.++++..+.   .. 
T Consensus         4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~~-   77 (252)
T 4hxt_A            4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP---DE-   77 (252)
T ss_dssp             HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC---HH-
T ss_pred             HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC---hH-
Confidence            688999999866  7888888999999854332 1 11 23357899999999999999999999999999876   55 


Q ss_pred             HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448          118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL  196 (463)
Q Consensus       118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i  196 (463)
                      ..+.+.+.+.++.++..+.+++..+...|..+|..++...+ ..+.+...+.++  .|.+.+.+.+..+|..++.++.++
T Consensus        78 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~--~L~~~l~~~~~~~~~~a~~~L~~l  155 (252)
T 4hxt_A           78 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVE--VLVKLLTSTDSEVQKEAARALANI  155 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH--HHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH--HHHHHHcCCCHHHHHHHHHHHHHH
Confidence            77788899999999999999999999999999999996655 446777888888  888788889999999999999999


Q ss_pred             HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhh
Q 012448          197 FSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRA  275 (463)
Q Consensus       197 a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~a  275 (463)
                      +..+++..+.+.+.|.++.++..+.+ +|.-+|..++..|..++. .+...+.+.+.|++..|++.+.+  .||-++..+
T Consensus       156 ~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a  232 (252)
T 4hxt_A          156 ASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS--TDSEVQKEA  232 (252)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHH
T ss_pred             HcCCHHHHHHHHHCcCHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC--CcHHHHHHH
Confidence            99999999999999999999999999 999999999999999999 88899999999999999999975  566677777


Q ss_pred             hhHhhhhcc
Q 012448          276 IMISGRLLS  284 (463)
Q Consensus       276 ili~g~i~~  284 (463)
                      ..+.+-+..
T Consensus       233 ~~~L~~l~~  241 (252)
T 4hxt_A          233 QRALENIKS  241 (252)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            777666654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.64  E-value=3.7e-13  Score=146.30  Aligned_cols=396  Identities=11%  Similarity=0.048  Sum_probs=288.0

Q ss_pred             CChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc--ch-hhchHHH
Q 012448            8 DDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA--SL-IPHYMPF   84 (463)
Q Consensus         8 ~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~--~l-~~~~~~~   84 (463)
                      +|+..-..+|.-+.+...  +++....+.+..-+|.|+..|++.+  +..+..++.+|..+.......  .+ .....+.
T Consensus        69 ~~~~~~~~A~~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~  144 (644)
T 2z6h_A           69 NDVETARCTAGTLHNLSH--HREGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQK  144 (644)
T ss_dssp             CCHHHHHHHHHHHHHHTT--SHHHHHHHHTTTHHHHHHHHTTCSS--HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHH
T ss_pred             CCHHHHHHHHHHHHHHhc--ChhhHHHHHHcCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHH
Confidence            366666666666665422  3457777888889999999999865  788888899999985443221  12 3567999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCch-HHHHHHHHHHHHHhCCCCCcccc
Q 012448           85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNE-EVATASMDAIKKLAGFPNGIDII  163 (463)
Q Consensus        85 l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~-~va~~A~~~L~~lak~~~~l~~l  163 (463)
                      |+..|+++++.++..++..+..+...+   .. ..+.+.+.+.++.++..+.+++. .+...|..+|..++..+..-+.+
T Consensus       145 Lv~lL~~~~~~~~~~a~~~L~~La~~~---~~-~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l  220 (644)
T 2z6h_A          145 MVALLNKTNVKFLAITTDCLQILAYGN---QE-SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI  220 (644)
T ss_dssp             HHHGGGCCCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred             HHHHHCcCCHHHHHHHHHHHHHHHhcC---cH-HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHH
Confidence            999999999999999999999988655   44 56677888999999999998763 45677899999999877666778


Q ss_pred             ccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-h
Q 012448          164 FPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-I  242 (463)
Q Consensus       164 ~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t  242 (463)
                      +..++++  .|.+.+...+..+|..+..++.++++..+.. +  ...++++.++.-+.+ +|.-++.+++..|..|+. .
T Consensus       221 ~~~g~l~--~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~-~--~~~~~i~~Lv~lL~~-~d~~v~~~a~~aL~~L~~~~  294 (644)
T 2z6h_A          221 VEAGGMQ--ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-E--GMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNN  294 (644)
T ss_dssp             HHTTHHH--HHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC-C--SCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTC
T ss_pred             HHCCCHH--HHHHHHhcCCHHHHHHHHHHHHHHhhcchhh-h--hhhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCC
Confidence            8888888  7887888889999999999999999876542 1  234899999999998 999999999999999999 6


Q ss_pred             HHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcccccc---c--hhcchhhhhhhHHHHHHHhccccCC-Ch
Q 012448          243 QHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDS---H--MFIDESSAKTVISAIDGRLGFLQSQ-DS  316 (463)
Q Consensus       243 ~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~---~--~~~~~~~~k~~p~~l~~~f~~~~~~-d~  316 (463)
                      +...+.+.+.|++..|+..+....+.+-++.+++.+.+.+.....-   .  .+.   -.+++|.+++    ++.+. +.
T Consensus       295 ~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~---~~~~l~~L~~----lL~~~~~~  367 (644)
T 2z6h_A          295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR---LHYGLPVVVK----LLHPPSHW  367 (644)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH---HTTHHHHHHH----TTSTTCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHH---HccChHHHHH----HhCccCch
Confidence            7889999999999999999987554456788899888888752111   1  111   1344566555    44554 46


Q ss_pred             hhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccc-------------------hh--hHhHHhhhHHHhc
Q 012448          317 DECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGH-------------------GK--QLAALHGLANIAG  375 (463)
Q Consensus       317 ~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~-------------------~~--k~r~L~al~~Il~  375 (463)
                      .++..|+|+|++|+...+..+.+..  .+.+..+++.....-..                   ..  +..+..+|.++..
T Consensus       368 ~v~~~a~~~L~nLa~~~~~~~~i~~--~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~  445 (644)
T 2z6h_A          368 PLIKATVGLIRNLALCPANHAPLRE--QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR  445 (644)
T ss_dssp             HHHHHHHHHHHHHTTSGGGHHHHHH--TTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHH--cCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc
Confidence            8999999999999998777666654  34666666554432100                   01  3345555555543


Q ss_pred             CCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhhhc
Q 012448          376 KTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELCSK  447 (463)
Q Consensus       376 ~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~  447 (463)
                      .+  .            .+..+ .   .   ..-+..+..++ .+-+++|.+|...|..++..+=..+.|...
T Consensus       446 ~~--~------------~~~~l-~---~---~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~  497 (644)
T 2z6h_A          446 DV--H------------NRIVI-R---G---LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAE  497 (644)
T ss_dssp             SH--H------------HHHHH-H---H---TTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred             CH--H------------HHHHH-H---h---CCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHc
Confidence            21  0            01111 0   1   23456677777 789999999999999998775554444443

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.62  E-value=7.3e-13  Score=138.54  Aligned_cols=410  Identities=11%  Similarity=0.050  Sum_probs=281.7

Q ss_pred             ChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccc-c-ch-hhchHHHH
Q 012448            9 DSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG-A-SL-IPHYMPFV   85 (463)
Q Consensus         9 ~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~-~-~l-~~~~~~~l   85 (463)
                      |+.....+|.-+.+.  +.+++....+.+..-+|.|+..|++.+  +..+..++.+|..+...... . .+ .....+.|
T Consensus        73 ~~~~~~~a~~~L~~l--s~~~~~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L  148 (529)
T 1jdh_A           73 DVETARCTAGTLHNL--SHHREGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM  148 (529)
T ss_dssp             CHHHHHHHHHHHHHH--TTSHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHH
T ss_pred             CHHHHHHHHHHHHHH--HcCchhHHHHHHcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHH
Confidence            566666666666664  223557778888899999999999866  77888888899988543222 1 12 35678999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHH-HHHHHHHHHHHhCCCCCccccc
Q 012448           86 QVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEV-ATASMDAIKKLAGFPNGIDIIF  164 (463)
Q Consensus        86 ~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~v-a~~A~~~L~~lak~~~~l~~l~  164 (463)
                      ...|.++++.|+..++..+..+...+   +. ..+.+.+.+.++.++..+.+++... ...+..+|..++.++...+.+.
T Consensus       149 ~~ll~~~~~~~~~~~~~~L~~la~~~---~~-~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  224 (529)
T 1jdh_A          149 VALLNKTNVKFLAITTDCLQILAYGN---QE-SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV  224 (529)
T ss_dssp             HHGGGCCCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhCC---HH-HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            99999999999999999999888755   45 6677788899999999998876554 4457888999998776667778


Q ss_pred             cCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hH
Q 012448          165 PADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQ  243 (463)
Q Consensus       165 ~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~  243 (463)
                      +.+.++  .|.+.+.+.+..++..+..++.+++...+.. +  ...|+++.++.-+.+ +|.-++.+++..|..|+. .+
T Consensus       225 ~~g~~~--~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~--~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~  298 (529)
T 1jdh_A          225 EAGGMQ--ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-E--GMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNY  298 (529)
T ss_dssp             HTTHHH--HHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-S--CCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTTCH
T ss_pred             HCCCHH--HHHHHHhCCChHHHHHHHHHHHHHhcCChhh-H--HHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCH
Confidence            888888  7877888889999999999999999876542 1  234889999999988 999999999999999999 57


Q ss_pred             HHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcccc-cc--c--hhcchhhhhhhHHHHHHHhccccCCC-hh
Q 012448          244 HSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKD-DS--H--MFIDESSAKTVISAIDGRLGFLQSQD-SD  317 (463)
Q Consensus       244 ~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~-~~--~--~~~~~~~~k~~p~~l~~~f~~~~~~d-~~  317 (463)
                      ...+.+.+.|+++.|++.+....+++-++.+++.+.+.+.... ..  .  .+.   -.++.|.+++    ++.+++ +.
T Consensus       299 ~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~---~~~~i~~L~~----lL~~~~~~~  371 (529)
T 1jdh_A          299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR---LHYGLPVVVK----LLHPPSHWP  371 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH---HTTCHHHHHH----TTSTTCCHH
T ss_pred             HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHH---HcCChhHHHH----HhccccchH
Confidence            7999999999999999999876665667888888888876521 11  0  111   1244566555    445554 58


Q ss_pred             hhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHH--HhcCCCchhhhhhhhhHHHHHHH
Q 012448          318 ECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLAN--IAGKTRSEDKIILNADAEESLRH  395 (463)
Q Consensus       318 ~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~--Il~~~r~~~~~il~~~~e~~l~~  395 (463)
                      ++..|+|++++++...+..+.+..  .+.+..+++...+.- ...|..+.-++++  +....+ + .++...-.. .+..
T Consensus       372 v~~~a~~~l~nl~~~~~~~~~~~~--~~~i~~L~~ll~~~~-~~v~~~a~~~l~n~~~~~~~~-~-~~i~~~~~~-al~~  445 (529)
T 1jdh_A          372 LIKATVGLIRNLALCPANHAPLRE--QGAIPRLVQLLVRAH-QDTQRRTSMGGTQQQFVEGVR-M-EEIVEGCTG-ALHI  445 (529)
T ss_dssp             HHHHHHHHHHHHTTSGGGHHHHHH--TTHHHHHHHHHHHHH-HHHC-----------CBTTBC-H-HHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHhcChhhhHHHHH--cCCHHHHHHHHHHHh-HHHHHHHhcccCchhhhcccc-H-HHHHHHHHH-HHHH
Confidence            999999999999998777766664  245555555443210 1113333333433  111100 0 011000000 0110


Q ss_pred             HHH-----HHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhhhcc
Q 012448          396 LIY-----EVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELCSKQ  448 (463)
Q Consensus       396 ~~y-----e~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~~  448 (463)
                      +..     .....   ..-...+..++ .+-+++|.++...|..++..+=+.+.+....
T Consensus       446 L~~~~~~~~~l~~---~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~  501 (529)
T 1jdh_A          446 LARDVHNRIVIRG---LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEG  501 (529)
T ss_dssp             HTTSHHHHHHHHH---TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTT
T ss_pred             HhcCchHHHHHhc---cCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence            000     00001   13345677777 8899999999999999997765555555543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.61  E-value=5e-13  Score=149.17  Aligned_cols=377  Identities=11%  Similarity=0.058  Sum_probs=276.0

Q ss_pred             cCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc-h--hhchHHHHHHhhcCC-CHHHHHHHHHHHHHHHhCCch
Q 012448           38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS-L--IPHYMPFVQVGLTAD-SHSVKRLACKTVTCLLEDSDL  113 (463)
Q Consensus        38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-l--~~~~~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~~~  113 (463)
                      .--+|.|+.+|++.+  +..++.++.+|..+-....... +  .+...+.|+..|.+. ++.+|+.+++.+.++..+.  
T Consensus       149 ~g~ip~Lv~lL~~~d--~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~--  224 (780)
T 2z6g_A          149 TRAIPELTKLLNDED--QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR--  224 (780)
T ss_dssp             HHHHHHHHHHHHCSC--HHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH--
T ss_pred             hCCHHHHHHHHCCCC--HHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--
Confidence            445889999998655  7788888888888843221111 1  235788889999765 9999999999999977654  


Q ss_pred             hHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHH
Q 012448          114 EASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSL  192 (463)
Q Consensus       114 ~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el  192 (463)
                        . ....+.+.+.++.++..+.+++..+...|+.+|..|+...+.. +.+...++++  .|.+++.+.+..++..+..+
T Consensus       225 --~-~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~--~Lv~lL~~~~~~v~~~a~~a  299 (780)
T 2z6g_A          225 --E-GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQ--KMVALLNKTNVKFLAITTDC  299 (780)
T ss_dssp             --H-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHH--HHHHGGGCCCHHHHHHHHHH
T ss_pred             --h-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHH--HHHHHHhcCCHHHHHHHHHH
Confidence              3 3455667799999999999999999999999999999886655 4555778888  78878878888888889999


Q ss_pred             HHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhh
Q 012448          193 IVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILR  272 (463)
Q Consensus       193 ~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r  272 (463)
                      +..++..+++.-..+.+.|.++.++..+++.++.-.+.+++.++..|+..+.....+.+.|++..|+..+.+.  ++-++
T Consensus       300 L~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~--~~~~~  377 (780)
T 2z6g_A          300 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQRLV  377 (780)
T ss_dssp             HHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS--CHHHH
T ss_pred             HHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCC--chHHH
Confidence            9999988899999999999999999999986666777889999999999888899999999999999999764  44344


Q ss_pred             hhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCC-HHHHHHHhhcCchhHHHHH
Q 012448          273 SRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSS-IQGATLLLLCLPPAARHVI  351 (463)
Q Consensus       273 ~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss-~eGk~~L~~~~~~~~~~~l  351 (463)
                      ..+.-+.+.+....  -.+. . ....+|.    +.+++.+.|+.++..|+|+|+.|+.. .+.++.+.+  ...+..++
T Consensus       378 ~~a~~~L~~L~~~~--~~~~-~-~~~~i~~----Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~--~g~i~~Lv  447 (780)
T 2z6g_A          378 QNCLWTLRNLSDAA--TKQE-G-MEGLLGT----LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ--VGGIEALV  447 (780)
T ss_dssp             HHHHHHHHHHHTTC--TTCS-C-CHHHHHH----HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT--TTHHHHHH
T ss_pred             HHHHHHHHHHhccc--hhhh-h-hhhHHHH----HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH--CCCHHHHH
Confidence            44444444333211  1110 0 1222333    44456789999999999999999984 566777765  35677777


Q ss_pred             HHHHhhccc-hhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCC-HHHHHHHH
Q 012448          352 DAAFDRQGH-GKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQA-AEIRLAGY  428 (463)
Q Consensus       352 ~~~~~~~~~-~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF-~elr~A~~  428 (463)
                      +.+.+.-.. ..+..++.+|++|....  +       +++. .+..+.+       ...+..+..++ .+. +++|.++.
T Consensus       448 ~lL~~~~~~~~v~~~Al~aL~nL~~~~--~-------~~~~-~~~~v~~-------~~~l~~L~~lL~~~~~~~v~~~A~  510 (780)
T 2z6g_A          448 RTVLRAGDREDITEPAICALRHLTSRH--Q-------DAEM-AQNAVRL-------HYGLPVVVKLLHPPSHWPLIKATV  510 (780)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTSSS--T-------THHH-HHHHHHH-------TTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred             HHHHccCCHHHHHHHHHHHHHHHHhcC--c-------hHHH-HHHHHHH-------cCCHHHHHHHhcCCChHHHHHHHH
Confidence            776654332 34888999999996532  1       1111 1111101       12356677777 565 59999999


Q ss_pred             HHHHHhhcCchhHHHhhhccchhHh
Q 012448          429 RMITGLVARPWCLMELCSKQEIINT  453 (463)
Q Consensus       429 ~~l~~l~~~~Wg~~~i~~~~gfie~  453 (463)
                      ..|..|+..+-.+..+.. .|++..
T Consensus       511 ~aL~nLa~~~~~~~~i~~-~g~i~~  534 (780)
T 2z6g_A          511 GLIRNLALCPANHAPLRE-QGAIPR  534 (780)
T ss_dssp             HHHHHHHSSHHHHHHHHH-TTHHHH
T ss_pred             HHHHHHhcCHHHHHHHHH-CCCHHH
Confidence            999999998877765554 344443

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.60  E-value=4.2e-14  Score=134.23  Aligned_cols=236  Identities=17%  Similarity=0.158  Sum_probs=197.7

Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC-
Q 012448           80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN-  158 (463)
Q Consensus        80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~-  158 (463)
                      ...+.+...|+++++.+|.-+++.+.+++.+.   .. ..+.+.+.++++.++..+.+++..+...|+.+|..++...+ 
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~---~~-~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   87 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG---NE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE   87 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH---HH-HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---Cc-hHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence            35788999999999999999999998887764   44 56778888999999999999999999999999999998655 


Q ss_pred             CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHH
Q 012448          159 GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYE  238 (463)
Q Consensus       159 ~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~e  238 (463)
                      ..+.++..+.++  .|.+.+.+.+..+|..++.++.+++..++.....+.+.|.++.++..|++ +|.-++.+++..|..
T Consensus        88 ~~~~i~~~g~i~--~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~  164 (252)
T 4db8_A           88 QIQAVIDAGALP--ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSN  164 (252)
T ss_dssp             HHHHHHHTTHHH--HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHH--HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHH
Confidence            346778888888  88878888999999999999999999988887889999999999999999 999999999999999


Q ss_pred             HHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccc-cc-hhcchhhhhhhHHHHHHHhccccCCC
Q 012448          239 LAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDD-SH-MFIDESSAKTVISAIDGRLGFLQSQD  315 (463)
Q Consensus       239 La~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~-~~-~~~~~~~~k~~p~~l~~~f~~~~~~d  315 (463)
                      |+. .+...+.+.+.|+++.|++.+.+.  ||-++..++.+.+.+..... .. .++   -.+.+|.    +.+++.+.+
T Consensus       165 l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~---~~g~i~~----L~~ll~~~~  235 (252)
T 4db8_A          165 IASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQAVK---EAGALEK----LEQLQSHEN  235 (252)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTTSCHHHHHHHH---HTTHHHH----HHTTTTCSS
T ss_pred             HHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHH---HCCcHHH----HHHHhCCCC
Confidence            999 778889999999999999999864  77778788877777764211 11 111   1223344    344677889


Q ss_pred             hhhhhHHHHHHHhhcC
Q 012448          316 SDECESALEALGQIGS  331 (463)
Q Consensus       316 ~~~~~~A~dtlG~Igs  331 (463)
                      +.++..|.|+|+++++
T Consensus       236 ~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          236 EKIQKEAQEALEKLQS  251 (252)
T ss_dssp             SHHHHTHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999999875

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.60  E-value=1e-13  Score=145.26  Aligned_cols=361  Identities=12%  Similarity=0.032  Sum_probs=254.7

Q ss_pred             CChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc--c-hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhH
Q 012448           39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA--S-LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEA  115 (463)
Q Consensus        39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~--~-l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~  115 (463)
                      ..+|.|+..|++.+  +..+..++..|+.+.....+.  . ......+.|+..|.++++.|++.+++++..+..++   +
T Consensus         2 ~~l~~lv~~L~s~~--~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~---~   76 (457)
T 1xm9_A            2 LTIPKAVQYLSSQD--EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS---T   76 (457)
T ss_dssp             CCHHHHHHHHHSSC--THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC---H
T ss_pred             CCHHHHHHHHCCCC--HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC---H
Confidence            46899999999876  778888888999984322221  1 23456899999999999999999999999999875   5


Q ss_pred             HHHHHHhhccCcHHHHHHhhc-CCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh--------c------
Q 012448          116 SCALQLLIDYEIYPLLLDCLI-NGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA--------Q------  180 (463)
Q Consensus       116 ~~~~~~~~~~~l~~~li~~l~-d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~--------~------  180 (463)
                      . ....+++.|.+|.++..|. .++..+...|+.+|..|+.+++.-..+.. +.++  .|.+++.        .      
T Consensus        77 ~-~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~--~Lv~ll~~~~s~~~~~~~~~~~  152 (457)
T 1xm9_A           77 T-NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALP--VLADRVIIPFSGWCDGNSNMSR  152 (457)
T ss_dssp             H-HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHH--HHHHHTTHHHHTCC--------
T ss_pred             H-HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHH--HHHHHHhccccccccCccchhc
Confidence            5 6778889999999999999 88999999999999999999544455777 8888  7776662        1      


Q ss_pred             --CCchhHHHHHHHHHHHHhcCHHHHHHHHhh-ccHHHHHhhcCCC-----CcHHHHHhHHHHHHHHHh-----------
Q 012448          181 --CSSLGRVRVLSLIVKLFSVSRSVASVIFKA-NLLTLLEEGVSKK-----NDTLETLSILELLYELAE-----------  241 (463)
Q Consensus       181 --~~~~vR~Rv~el~v~ia~~S~~~~~~v~~s-gl~~~ll~eL~~~-----~DvLv~lnalell~eLa~-----------  241 (463)
                        .+..++..+.-++.++++. ++..+.+++. |.++.++.-|.++     .|.-++-||+-+|+.|+.           
T Consensus       153 e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~  231 (457)
T 1xm9_A          153 EVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR  231 (457)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHH
T ss_pred             ccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhh
Confidence              3456677999999999988 8999999998 9999999888631     233345577777776642           


Q ss_pred             ----------------------------------------hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhh
Q 012448          242 ----------------------------------------IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGR  281 (463)
Q Consensus       242 ----------------------------------------t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~  281 (463)
                                                              .++|.+.+.+.|++..|+..+...+ +|.++-.+.-+.+-
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-~~~~~e~a~~aL~n  310 (457)
T 1xm9_A          232 QLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK-KDATLEACAGALQN  310 (457)
T ss_dssp             HHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             hcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence                                                    1335566677788888888887653 45555555544444


Q ss_pred             hccccccc-hhcchh-h--hhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhh
Q 012448          282 LLSKDDSH-MFIDES-S--AKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDR  357 (463)
Q Consensus       282 i~~f~~~~-~~~~~~-~--~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~  357 (463)
                      +....+-. ..+.+. .  .+++|.+++    ++.+++..++..|.|+|+.+....+.+.++.+.   .+..+++.....
T Consensus       311 l~~~~~~~~~~~~~~~v~~~~~l~~Lv~----LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~---~i~~Lv~lL~~~  383 (457)
T 1xm9_A          311 LTASKGLMSSGMSQLIGLKEKGLPQIAR----LLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQ---VFPEVTRLLTSH  383 (457)
T ss_dssp             HTTCSSSHHHHHHHHHHTTSCCHHHHHH----HTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHH---THHHHHHTTTSC
T ss_pred             hccCcCcchHHHHHHHHHHcCCchHHHH----HHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHh---hhHHHHHhccCC
Confidence            44311111 011010 1  356777666    567889999999999999999988888888642   455555543322


Q ss_pred             ccc---h--hhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cC-CHHHHHHHHHH
Q 012448          358 QGH---G--KQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQ-AAEIRLAGYRM  430 (463)
Q Consensus       358 ~~~---~--~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qp-F~elr~A~~~~  430 (463)
                      -..   .  ....++.++.+|+...  +      +     ..+.+ ...      .-+..+..+. .+ -++++-.|+.+
T Consensus       384 ~~~~~~~~~v~~~~l~~l~ni~~~~--~------~-----~~~~i-~~~------g~l~~L~~L~~~~~~~~i~~~A~~~  443 (457)
T 1xm9_A          384 TGNTSNSEDILSSACYTVRNLMASQ--P------Q-----LAKQY-FSS------SMLNNIINLCRSSASPKAAEAARLL  443 (457)
T ss_dssp             CSCSTTHHHHHHHHHHHHHHHHTTC--T------H-----HHHHH-CCH------HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHhcC--H------H-----HHHHH-HHc------CCHHHHHHHHcCCCcHHHHHHHHHH
Confidence            110   1  1457888899988643  2      0     11122 111      2245566667 66 89999999999


Q ss_pred             HHHhhcC
Q 012448          431 ITGLVAR  437 (463)
Q Consensus       431 l~~l~~~  437 (463)
                      |..++.|
T Consensus       444 L~~~~~~  450 (457)
T 1xm9_A          444 LSDMWSS  450 (457)
T ss_dssp             HHTTSSS
T ss_pred             HHHHHcc
Confidence            9988765

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.59  E-value=7.5e-14  Score=129.04  Aligned_cols=200  Identities=16%  Similarity=0.123  Sum_probs=173.2

Q ss_pred             ccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHH
Q 012448           74 GASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKL  153 (463)
Q Consensus        74 ~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~l  153 (463)
                      |......+.+.|...|+++++.||..+++.++++..++   .. ..+.+.+.+.++.++.+|.+++..+...|+.+|..+
T Consensus         6 ~~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~---~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l   81 (210)
T 4db6_A            6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGG---NE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI   81 (210)
T ss_dssp             -------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC---HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCC---HH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            33444556889999999999999999999999999776   55 677888999999999999999999999999999999


Q ss_pred             hCCCCC-ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhH
Q 012448          154 AGFPNG-IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSI  232 (463)
Q Consensus       154 ak~~~~-l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lna  232 (463)
                      +...+. .+.+++.+.++  .|.+.+.+.+..+|..++.++.+++..+++..+.+.+.|.++.++..+++ +|.-++.++
T Consensus        82 ~~~~~~~~~~i~~~g~i~--~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a  158 (210)
T 4db6_A           82 ASGGNEQIQAVIDAGALP--ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEA  158 (210)
T ss_dssp             TTSCHHHHHHHHHTTCHH--HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHH
T ss_pred             hcCCcHHHHHHHHCCCHH--HHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHH
Confidence            976654 36788889988  88888889999999999999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhh
Q 012448          233 LELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRL  282 (463)
Q Consensus       233 lell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i  282 (463)
                      +..|..++. ++...+.+.+.|+++.|++.+.+  .|+-++..+..+.+.+
T Consensus       159 ~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l  207 (210)
T 4db6_A          159 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSH--ENEKIQKEAQEALEKL  207 (210)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHH
Confidence            999999999 48999999999999999999984  5666666666555544

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.58  E-value=5.4e-13  Score=148.79  Aligned_cols=388  Identities=11%  Similarity=0.091  Sum_probs=278.7

Q ss_pred             HHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccc---cc-cch----hhchHHHHHHhhcCC--CHHHHHH
Q 012448           30 AAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTK---YG-ASL----IPHYMPFVQVGLTAD--SHSVKRL   99 (463)
Q Consensus        30 ~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~---~~-~~l----~~~~~~~l~~gL~h~--~~~Vr~L   99 (463)
                      ...++++...-.|.|...|++.+  +..+..+..+|.++=..-   .+ ..+    .+...+.+.+.|.|+  ++.||+-
T Consensus       321 ~~~R~~I~~~gv~~L~~Ll~s~~--~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~  398 (810)
T 3now_A          321 KDKAKALCEQGVDILKRLYHSKN--DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRW  398 (810)
T ss_dssp             HHHHHTTHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHH
T ss_pred             cHHHHHHHHcCcHHHHHHHcCCC--HHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            55667665555699999998765  566777777888883211   11 111    245678899999999  9999999


Q ss_pred             HHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC--------------------
Q 012448          100 ACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG--------------------  159 (463)
Q Consensus       100 al~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~--------------------  159 (463)
                      +++.+.++....   .. -.+++.+.|++|.++.++..++..+...|..+|.+|+...+.                    
T Consensus       399 AveaLayLS~~~---~v-k~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~  474 (810)
T 3now_A          399 AADGLAYLTLDA---EC-KEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPE  474 (810)
T ss_dssp             HHHHHHHHTTSH---HH-HHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCC
T ss_pred             HHHHHHHHhCCc---HH-HHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcc
Confidence            999999997755   44 556777899999999999999999999999999999986521                    


Q ss_pred             -------------ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcH
Q 012448          160 -------------IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDT  226 (463)
Q Consensus       160 -------------l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~Dv  226 (463)
                                   .+.|++.++++  .|..++.+.++.+|..+..++.+|+. +++.-..+++.|.++.++..|.+ .+.
T Consensus       475 ~~~ld~~~~v~~r~~~VveaGaVp--~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s-~~~  550 (810)
T 3now_A          475 EHELDDVDFINKRITVLANEGITT--ALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALE-GTE  550 (810)
T ss_dssp             SSCHHHHHHHHHHHHHHHHTTHHH--HHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHS-SCH
T ss_pred             ccccccHHHHHHHHHHHHHCcCHH--HHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcc-CCH
Confidence                         14667778888  88878888999999999999999996 56788999999999999999998 778


Q ss_pred             HHHHhHHHHHHHHHhhHHHHHHH---HhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccc-c-chhcchhhhhhhH
Q 012448          227 LETLSILELLYELAEIQHSAEFL---SRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDD-S-HMFIDESSAKTVI  301 (463)
Q Consensus       227 Lv~lnalell~eLa~t~~g~~~L---~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~-~-~~~~~~~~~k~~p  301 (463)
                      -+|.+|+..|..|+.+.....-.   ...|++..|++++.. ..+++.+..|+++.+.+...++ . -.++   -..+.|
T Consensus       551 ~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~-~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii---~aG~l~  626 (810)
T 3now_A          551 KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ-DCTALENFESLMALTNLASMNESVRQRII---KEQGVS  626 (810)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST-TSCHHHHHHHHHHHHHHTTSCHHHHHHHH---HTTHHH
T ss_pred             HHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC-CCcHHHHHHHHHHHHHHhcCCHHHHHHHH---HcCCHH
Confidence            88999999999999842221111   124789999999863 3344544567787777776422 1 1223   134566


Q ss_pred             HHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchh
Q 012448          302 SAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSED  381 (463)
Q Consensus       302 ~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~  381 (463)
                      .+++    ++.++++.++..|+|++++|.++.+....+... .+.+..++... +.-....|..|.-||++|....  + 
T Consensus       627 ~Lv~----LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~-~g~l~~Lv~LL-~s~d~~vq~~Aa~ALanLt~~s--~-  697 (810)
T 3now_A          627 KIEY----YLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGN-NDRVKFLALLC-EDEDEETATACAGALAIITSVS--V-  697 (810)
T ss_dssp             HHHH----HHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSS-SSHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHC--H-
T ss_pred             HHHH----HHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhc-cCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCC--H-
Confidence            6665    345678899999999999999998886655532 34444443332 2211233778889999998732  1 


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchh-HHHhhhccchhHhhcCC
Q 012448          382 KIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWC-LMELCSKQEIINTVTDA  457 (463)
Q Consensus       382 ~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg-~~~i~~~~gfie~lldr  457 (463)
                           .    ....++ +.      ..-...+..++ .+.+++|..|...+..++...=- .+.|.. .|.++.|.+=
T Consensus       698 -----~----~~~~ii-~~------~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e-~G~i~~L~~L  758 (810)
T 3now_A          698 -----K----CCEKIL-AI------ASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFE-TDIMELLSGL  758 (810)
T ss_dssp             -----H----HHHHHH-TS------TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHT-STHHHHHTTS
T ss_pred             -----H----HHHHHH-HH------cCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHH
Confidence                 1    112222 21      13355677788 88999999999999999875322 344444 5777777664

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.55  E-value=1.3e-12  Score=145.61  Aligned_cols=414  Identities=12%  Similarity=0.042  Sum_probs=301.3

Q ss_pred             CCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-chhhchHHH
Q 012448            6 SMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-SLIPHYMPF   84 (463)
Q Consensus         6 ~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-~l~~~~~~~   84 (463)
                      ...|++-.+++++-+++--...++....-|.+..-+|.|+..+++.+  +...++++.+|..+-+..... .+.....+.
T Consensus       257 ~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~--~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~  334 (810)
T 3now_A          257 LAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDD--ELQQRVACECLIAASSKKDKAKALCEQGVDI  334 (810)
T ss_dssp             SSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSC--HHHHHHHHHHHHHHTTSHHHHHTTHHHHHHH
T ss_pred             ccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCcHHHHHHHHcCcHH
Confidence            45677777888877766444445566666778899999999999876  677778888888874433332 355555799


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhc---cCcHHHHHHhhcCC--chHHHHHHHHHHHHHhCCCCC
Q 012448           85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLID---YEIYPLLLDCLING--NEEVATASMDAIKKLAGFPNG  159 (463)
Q Consensus        85 l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~---~~l~~~li~~l~d~--d~~va~~A~~~L~~lak~~~~  159 (463)
                      |..-|+..++.+|..+++.+.++....+. +. -.+.+.+   ..+++.++..|.++  |..+.+.|+..|..++..++.
T Consensus       335 L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~-d~-~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v  412 (810)
T 3now_A          335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQ-DA-AIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC  412 (810)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHTTTTT-TT-SCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhcccccc-Cc-cccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH
Confidence            99999999999999999999998743210 00 0111212   24577888888888  899999999999999988764


Q ss_pred             c-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCH-----------------------------HH---HHH
Q 012448          160 I-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSR-----------------------------SV---ASV  206 (463)
Q Consensus       160 l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~-----------------------------~~---~~~  206 (463)
                      - +.+.+.++++  .|-.++.+.+..+.+-+..++.+|++.++                             ..   .+.
T Consensus       413 k~~lv~d~g~Ip--~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~  490 (810)
T 3now_A          413 KEKLIEDKASIH--ALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITV  490 (810)
T ss_dssp             HHHHHHCHHHHH--HHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHccchHH--HHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHH
Confidence            4 3455778888  88878888899999999999999998541                             12   268


Q ss_pred             HHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcccc
Q 012448          207 IFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKD  286 (463)
Q Consensus       207 v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~  286 (463)
                      ++++|.++.++..+++ ++.-+|-+|+..|..+|..++..+.+.++|++..|+..+.+.  ++-.+..|.-+.+.+...+
T Consensus       491 VveaGaVp~LV~LL~s-~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~--~~~~k~~Aa~AL~nL~~~~  567 (810)
T 3now_A          491 LANEGITTALCALAKT-ESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG--TEKGKRHATQALARIGITI  567 (810)
T ss_dssp             HHHTTHHHHHHHHHTC-CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHS
T ss_pred             HHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC--CHHHHHHHHHHHHHHhcCC
Confidence            8999999999999999 999999999999999999888999999999999999999753  4445656666666555422


Q ss_pred             c-cchhcchhhhhhhHHHHHHHhccccCC-ChhhhhHHHHHHHhhcCCH-HHHHHHhhcCchhHHHHHHHHHhhccchhh
Q 012448          287 D-SHMFIDESSAKTVISAIDGRLGFLQSQ-DSDECESALEALGQIGSSI-QGATLLLLCLPPAARHVIDAAFDRQGHGKQ  363 (463)
Q Consensus       287 ~-~~~~~~~~~~k~~p~~l~~~f~~~~~~-d~~~~~~A~dtlG~Igss~-eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k  363 (463)
                      + -..|..+....+.|++++    ++.+. +...+..|+|+|+++.+.. +.++.+...  ..+..++....+. ....|
T Consensus       568 ~p~~~~~~~~~~~aIppLv~----LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a--G~l~~Lv~LL~s~-~~~Vq  640 (810)
T 3now_A          568 NPEVSFSGQRSLDVIRPLLN----LLQQDCTALENFESLMALTNLASMNESVRQRIIKE--QGVSKIEYYLMED-HLYLT  640 (810)
T ss_dssp             CHHHHTTTHHHHHTHHHHHH----TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHHHHSC-CTTHH
T ss_pred             ChhhhhcchhhhcHHHHHHH----HhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHc--CCHHHHHHHHcCC-CHHHH
Confidence            2 122211112345777666    34433 2334457999999999964 556666653  4567776666542 22338


Q ss_pred             HhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhc-CchhH
Q 012448          364 LAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVA-RPWCL  441 (463)
Q Consensus       364 ~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~-~~Wg~  441 (463)
                      ..|..++++|...+  +           ...++. +      +..-+..+..++ .+-+++|.+|-..|..|+. .+-..
T Consensus       641 ~~A~~~L~NLa~~~--~-----------~~~~~v-~------~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~  700 (810)
T 3now_A          641 RAAAQCLCNLVMSE--D-----------VIKMFE-G------NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC  700 (810)
T ss_dssp             HHHHHHHHHHTTSH--H-----------HHHHHH-S------SSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHhCCh--H-----------HHHHHH-h------ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            89999999998742  1           122222 1      124567788888 7789999999999999999 67788


Q ss_pred             HHhhhccchhHhhc
Q 012448          442 MELCSKQEIINTVT  455 (463)
Q Consensus       442 ~~i~~~~gfie~ll  455 (463)
                      +.+....|+++.|.
T Consensus       701 ~~ii~~~g~I~~Lv  714 (810)
T 3now_A          701 EKILAIASWLDILH  714 (810)
T ss_dssp             HHHHTSTTHHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            88888677777664

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.54  E-value=6.9e-12  Score=139.96  Aligned_cols=395  Identities=11%  Similarity=0.050  Sum_probs=279.2

Q ss_pred             ChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc--ch-hhchHHHH
Q 012448            9 DSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA--SL-IPHYMPFV   85 (463)
Q Consensus         9 ~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~--~l-~~~~~~~l   85 (463)
                      |+..-..++.-+.+-  +.+++....+.+...+|.|+..|++.+  +..+..++.+|..+.......  .+ .....+.|
T Consensus       206 d~~vr~~Aa~aL~~L--s~~~~~~~~i~~~g~I~~Lv~lL~~~~--~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~L  281 (780)
T 2z6g_A          206 DVETARCTSGTLHNL--SHHREGLLAIFKSGGIPALVNMLGSPV--DSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM  281 (780)
T ss_dssp             CHHHHHHHHHHHHHH--HTSHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHH
T ss_pred             CHHHHHHHHHHHHHH--hCCchhHHHHHHcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHH
Confidence            555445555545442  112445667778889999999999875  778888888999885432221  12 34678899


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHH-HHHHHHHHHHhCCCCCccccc
Q 012448           86 QVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVA-TASMDAIKKLAGFPNGIDIIF  164 (463)
Q Consensus        86 ~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va-~~A~~~L~~lak~~~~l~~l~  164 (463)
                      ...|.++++.|++.++..+..+...+   .. ....+.+.+.++.++..+.+++.... ..|..+|..++..+...+.+.
T Consensus       282 v~lL~~~~~~v~~~a~~aL~~La~~~---~e-~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~  357 (780)
T 2z6g_A          282 VALLNKTNVKFLAITTDCLQILAYGN---QE-SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV  357 (780)
T ss_dssp             HHGGGCCCHHHHHHHHHHHHHHHTTC---HH-HHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcCC---hH-HHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHH
Confidence            99999999999999999999877644   44 55667788999999999998876544 467888999998765556777


Q ss_pred             cCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hH
Q 012448          165 PADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQ  243 (463)
Q Consensus       165 ~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~  243 (463)
                      ..++++  .|...+.+.+..++..+..++.+++......   ....++++.++..|++ +|.-++.+|+.+|..|+. .+
T Consensus       358 ~~g~l~--~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~-~d~~vr~~A~~aL~~L~~~~~  431 (780)
T 2z6g_A          358 EAGGMQ--ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNY  431 (780)
T ss_dssp             HTTHHH--HHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCH
T ss_pred             HhchHH--HHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCH
Confidence            888888  7877888888999999999999999876542   1235789999999998 999999999999999999 56


Q ss_pred             HHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccc-ccc--c--hhcchhhhhhhHHHHHHHhccccCCCh-h
Q 012448          244 HSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSK-DDS--H--MFIDESSAKTVISAIDGRLGFLQSQDS-D  317 (463)
Q Consensus       244 ~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f-~~~--~--~~~~~~~~k~~p~~l~~~f~~~~~~d~-~  317 (463)
                      ...+.+.+.|++..|++.+.+..+.+-++.+++.+.|.+... +..  .  .+.   -..+.|.+++    ++.+.+. .
T Consensus       432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~---~~~~l~~L~~----lL~~~~~~~  504 (780)
T 2z6g_A          432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVR---LHYGLPVVVK----LLHPPSHWP  504 (780)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHH---HTTCHHHHHH----TTSTTCCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHH---HcCCHHHHHH----HhcCCChHH
Confidence            788999999999999999987544335677889888888652 111  0  111   1244555554    4455554 8


Q ss_pred             hhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccch---------------------hhHhHHhhhHHHhcC
Q 012448          318 ECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHG---------------------KQLAALHGLANIAGK  376 (463)
Q Consensus       318 ~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~---------------------~k~r~L~al~~Il~~  376 (463)
                      ++..|.|+|++|+...+.+..+...  +.+..+++.+...-...                     .+..+..||.++...
T Consensus       505 v~~~A~~aL~nLa~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~  582 (780)
T 2z6g_A          505 LIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD  582 (780)
T ss_dssp             HHHHHHHHHHHHHSSHHHHHHHHHT--THHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHC--CCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC
Confidence            9999999999999988877666652  44555554443211000                     133445555554321


Q ss_pred             CCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhhhc
Q 012448          377 TRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELCSK  447 (463)
Q Consensus       377 ~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~  447 (463)
                         +.           .+..+ .   .   ..-+..+..++ .+-+++|.+|...|..++..+=+.+.|...
T Consensus       583 ---~~-----------~~~~l-~---~---~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~  633 (780)
T 2z6g_A          583 ---IH-----------NRIVI-R---G---LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAE  633 (780)
T ss_dssp             ---HH-----------HHHHH-H---H---TCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred             ---hh-----------hHHHH-H---H---CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHC
Confidence               10           01111 1   1   23456677788 889999999999999998776555555543

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.51  E-value=4.8e-13  Score=123.57  Aligned_cols=194  Identities=16%  Similarity=0.126  Sum_probs=168.1

Q ss_pred             hcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc-----hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCC
Q 012448           37 DRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS-----LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDS  111 (463)
Q Consensus        37 ~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-----l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~  111 (463)
                      ...+.|.|+..|++.+  +..+..++.+|..+..  ....     ......+.|...|+++++.||+.+++.++++..+.
T Consensus        10 ~~~~~~~l~~LL~s~~--~~v~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   85 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD--QQELQSALRKLSQIAS--GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG   85 (210)
T ss_dssp             ---CHHHHHHHTTCSC--HHHHHHHHHHHHHHHT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             ccchhHHHHHHhcCCC--HHHHHHHHHHHHHHHc--CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            3457788999998766  7888899999999842  2221     23356899999999999999999999999998766


Q ss_pred             chhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHH
Q 012448          112 DLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVL  190 (463)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~  190 (463)
                         .. ..+.+.+.|.++.++..+.+++..+...|..+|..++.+.+.. +.+++.+.++  .|.+.+.+.+..+|..++
T Consensus        86 ---~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~--~L~~ll~~~~~~v~~~a~  159 (210)
T 4db6_A           86 ---NE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP--ALVQLLSSPNEQILQEAL  159 (210)
T ss_dssp             ---HH-HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH--HHHHHTTCSCHHHHHHHH
T ss_pred             ---cH-HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHH--HHHHHHcCCCHHHHHHHH
Confidence               55 6778889999999999999999999999999999999877644 6778888888  888788888999999999


Q ss_pred             HHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448          191 SLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE  241 (463)
Q Consensus       191 el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~  241 (463)
                      .++.+++..+++..+.+.+.|.++.++.-+.+ +|.-+|.+|+..|..|++
T Consensus       160 ~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          160 WALSNIASGGNEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999 999999999999998864

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.42  E-value=2.2e-11  Score=131.47  Aligned_cols=375  Identities=11%  Similarity=0.052  Sum_probs=258.2

Q ss_pred             cCChHHHHHccccCCCCcchHHHHHHHHHHHhccc-cc-cc-hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhC-Cch
Q 012448           38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTK-YG-AS-LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLED-SDL  113 (463)
Q Consensus        38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~-~~-~~-l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~-~~~  113 (463)
                      ...+|.|+..|++.+  +..+..++..|..+-... .. .. ......+.|+..|.++++.|++-|+++++.++.+ +  
T Consensus        47 ~~~i~~LV~~L~s~~--~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~--  122 (584)
T 3l6x_A           47 QPELPEVIAMLGFRL--DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD--  122 (584)
T ss_dssp             CCCHHHHHHHTTCSC--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC--
T ss_pred             cccHHHHHHHHCCCC--HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC--
Confidence            345999999999865  666777777887773211 11 11 2334689999999999999999999999999875 3  


Q ss_pred             hHHHHHHHhhccCcHHHHHHhhcC-CchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh-------------
Q 012448          114 EASCALQLLIDYEIYPLLLDCLIN-GNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA-------------  179 (463)
Q Consensus       114 ~~~~~~~~~~~~~l~~~li~~l~d-~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~-------------  179 (463)
                       .. ....++++|.++.++..|.. ++.++.+.|..+|..++.+++.-..|+. +.++  .|.+++.             
T Consensus       123 -~~-nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp--~Lv~LL~~p~sg~~~~~~~~  197 (584)
T 3l6x_A          123 -QD-NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALH--ALTDEVIIPHSGWEREPNED  197 (584)
T ss_dssp             -HH-HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHH--HHHHHTHHHHHCCC------
T ss_pred             -HH-HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHH--HHHHHHhccccccccccccc
Confidence             34 56788899999999999997 6888999999999999987654345554 4565  5554441             


Q ss_pred             -----cCCchhHHHHHHHHHHHHhcCHHHHHHHHh-hccHHHHHhhcCC-----CCcHHHHHhHHHHHHHHHhh------
Q 012448          180 -----QCSSLGRVRVLSLIVKLFSVSRSVASVIFK-ANLLTLLEEGVSK-----KNDTLETLSILELLYELAEI------  242 (463)
Q Consensus       180 -----~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~-sgl~~~ll~eL~~-----~~DvLv~lnalell~eLa~t------  242 (463)
                           ..++.++..+..++-++++.+++.-..+++ .|+++.|+.-+.+     ..|.-.+-||+-.|+.|+..      
T Consensus       198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~  277 (584)
T 3l6x_A          198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIP  277 (584)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHST
T ss_pred             ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccccc
Confidence                 125689999999999999999997777776 5777788776642     14556788888888776642      


Q ss_pred             --------------------HHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccch-hcchh--hhhh
Q 012448          243 --------------------QHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHM-FIDES--SAKT  299 (463)
Q Consensus       243 --------------------~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~-~~~~~--~~k~  299 (463)
                                          +.|.+.|.+.+++..|+..+..+. ++-++-.|..+..-+.....-.. .+...  -.++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~-~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~g  356 (584)
T 3l6x_A          278 QAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK-TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKA  356 (584)
T ss_dssp             TCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHH
T ss_pred             chhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCc
Confidence                                335556666777888888887654 34455566666555543110110 00000  1355


Q ss_pred             hHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhcc-------chhhHhHHhhhHH
Q 012448          300 VISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQG-------HGKQLAALHGLAN  372 (463)
Q Consensus       300 ~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~-------~~~k~r~L~al~~  372 (463)
                      +|.+++    ++.++++..+..|.|+|+.+.....-+..+..   ..+..++........       ......++.+|.+
T Consensus       357 lp~Lv~----LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~---g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~N  429 (584)
T 3l6x_A          357 LSAIAD----LLTNEHERVVKAASGALRNLAVDARNKELIGK---HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE  429 (584)
T ss_dssp             HHHHHH----GGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHH---HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHH
T ss_pred             HHHHHH----HHcCCCHHHHHHHHHHHHHHhCChhHHHHHHh---CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHH
Confidence            666555    67889999999999999999986666666632   355555555433211       1126678888888


Q ss_pred             HhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-c--CCHHHHHHHHHHHHHhhcCchhHHHhhhccc
Q 012448          373 IAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-Q--QAAEIRLAGYRMITGLVARPWCLMELCSKQE  449 (463)
Q Consensus       373 Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-q--pF~elr~A~~~~l~~l~~~~Wg~~~i~~~~g  449 (463)
                      |....  +      .+     .+.+.+       ..-+..+..++ .  ..+.++-+|-.+|..|+.|.=.+..+.. .|
T Consensus       430 L~a~~--~------~~-----~~~I~~-------~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk-~G  488 (584)
T 3l6x_A          430 VIAEN--L------EA-----AKKLRE-------TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEK-EG  488 (584)
T ss_dssp             HHTTC--H------HH-----HHHHHH-------TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHT-TT
T ss_pred             HhcCC--H------HH-----HHHHHH-------CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHH-cC
Confidence            88643  2      11     112212       23456666776 4  3899999999999999998877777766 45


Q ss_pred             h
Q 012448          450 I  450 (463)
Q Consensus       450 f  450 (463)
                      |
T Consensus       489 ~  489 (584)
T 3l6x_A          489 W  489 (584)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.42  E-value=3.4e-11  Score=126.09  Aligned_cols=175  Identities=15%  Similarity=0.102  Sum_probs=152.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-
Q 012448           82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-  160 (463)
Q Consensus        82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-  160 (463)
                      .+.++..|.++++.+|.-+++++.++..++   +. ..+.+.+.|.+|.++.+|.+++..+...|..+|..|+...+.. 
T Consensus         4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~---~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k   79 (457)
T 1xm9_A            4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD---ES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC---SS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC---hH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            577899999999999999999999998766   34 5567788999999999999999999999999999999985544 


Q ss_pred             cccccCCCcchhhHhhHhh-cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcC--------CC-------C
Q 012448          161 DIIFPADNKAATDLGNLVA-QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVS--------KK-------N  224 (463)
Q Consensus       161 ~~l~~~~~~~~~~L~~~~~-~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~--------~~-------~  224 (463)
                      ..|...+.++  .|.+++. +.+..+|..+..++.+++.. ++.-..+++ |.++.++..|.        +.       .
T Consensus        80 ~~i~~~G~i~--~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~  155 (457)
T 1xm9_A           80 LETRRQNGIR--EAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVV  155 (457)
T ss_dssp             HHHHHTTCHH--HHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CC
T ss_pred             HHHHHcCCHH--HHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccc
Confidence            6788999999  8887887 67899999999999999998 667777888 99999999993        21       3


Q ss_pred             cHHHHHhHHHHHHHHHhhHHHHHHHHhc-chHHHHHHHhcc
Q 012448          225 DTLETLSILELLYELAEIQHSAEFLSRT-TLLQLLCSLIGN  264 (463)
Q Consensus       225 DvLv~lnalell~eLa~t~~g~~~L~~~-gi~~~L~~~i~~  264 (463)
                      |.=++.+|+-.|+.|+..++..+.+.+. |+++.|+.++.+
T Consensus       156 ~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~  196 (457)
T 1xm9_A          156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN  196 (457)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence            6677789999999999998899999998 999999999985

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.38  E-value=9.1e-12  Score=123.94  Aligned_cols=184  Identities=14%  Similarity=0.074  Sum_probs=155.1

Q ss_pred             HHHHHHHHHHHhccccccc-h-hhchHHHHHH-hhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHh
Q 012448           58 EDTLVVCLERIFKTKYGAS-L-IPHYMPFVQV-GLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDC  134 (463)
Q Consensus        58 ~~~~~~vL~~il~~~~~~~-l-~~~~~~~l~~-gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~  134 (463)
                      +..+...|..+....+.+. + .....+.|+. .|+|+++.||+-|+|.++.++.++   +. ..+.+++.|.++.++.+
T Consensus        57 k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n---~~-~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           57 REGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV---AA-IQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC---HH-HHHHHHHCCCHHHHHHH
Confidence            4444556666655443332 1 1234667777 999999999999999999999987   66 77889999999999999


Q ss_pred             hc-CCchHHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhcc
Q 012448          135 LI-NGNEEVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANL  212 (463)
Q Consensus       135 l~-d~d~~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl  212 (463)
                      |. +++.++.+.|+.+|+.|+++.+ +.+.+.+.+.++  .|.+.+.+.+..+|.+++-++.+++..+++..+.+++.|.
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~--~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~  210 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFS--VLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  210 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH--HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHH--HHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence            99 4689999999999999998765 556788888888  8888888899999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCcHHHHHhHHHHHHHHHhh-HHHHHH
Q 012448          213 LTLLEEGVSKKNDTLETLSILELLYELAEI-QHSAEF  248 (463)
Q Consensus       213 ~~~ll~eL~~~~DvLv~lnalell~eLa~t-~~g~~~  248 (463)
                      ++.++..|.+ +|.-++-.++..|..++.. +...+.
T Consensus       211 i~~Lv~LL~~-~d~~v~~~al~aL~~l~~~~~~~~~~  246 (296)
T 1xqr_A          211 VQQLVALVRT-EHSPFHEHVLGALCSLVTDFPQGVRE  246 (296)
T ss_dssp             HHHHHHHHTS-CCSTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcC-CChhHHHHHHHHHHHHHhCChhHHHH
Confidence            9999999999 9999999999999999994 554443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.36  E-value=5.2e-11  Score=133.06  Aligned_cols=307  Identities=16%  Similarity=0.134  Sum_probs=208.2

Q ss_pred             HHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 012448           42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQL  121 (463)
Q Consensus        42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~  121 (463)
                      +.++.+|.+.+  +..+.+++.++..+.... +..--+.+.+.|..++.++++.+|+.++..++++.++.   .. ...-
T Consensus        93 ~~ll~~l~~~~--~~vr~~~a~~i~~ia~~~-~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~---~~-~~~~  165 (852)
T 4fdd_A           93 SECLNNIGDSS--PLIRATVGILITTIASKG-ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDS---AE-ILDS  165 (852)
T ss_dssp             HHHHTTTTCSS--HHHHHHHHHHHHHHHHHT-TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH---TT-HHHH
T ss_pred             HHHHHHHcCCC--HHHHHHHHHHHHHHHHhc-CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh---HH-Hhch
Confidence            56777787655  788999999999996654 33456778999999999999999999999999998754   22 1110


Q ss_pred             -h---hccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448          122 -L---IDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL  196 (463)
Q Consensus       122 -~---~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i  196 (463)
                       .   .-..+++.++.++++++..|...|+++|..+.+..++. ...+ +..++  .|.+.+...++.+|..+++++..+
T Consensus       166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~--~l~~~~~d~~~~vr~~a~~~L~~l  242 (852)
T 4fdd_A          166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIE--NLFALAGDEEPEVRKNVCRALVML  242 (852)
T ss_dssp             CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHH--HHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHH--HHHHHcCCCCHHHHHHHHHHHHHH
Confidence             0   01247888889999999999999999999887665421 1111 12334  455566678999999999999999


Q ss_pred             HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhc--chHHHHHHHhc-----------
Q 012448          197 FSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRT--TLLQLLCSLIG-----------  263 (463)
Q Consensus       197 a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~--gi~~~L~~~i~-----------  263 (463)
                      ++..++.+....+ ++++.++..+.+ +|.-++.+++|.+..+++.+...+++...  .++..+...+.           
T Consensus       243 ~~~~~~~~~~~l~-~l~~~l~~~~~~-~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~  320 (852)
T 4fdd_A          243 LEVRMDRLLPHMH-NIVEYMLQRTQD-QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG  320 (852)
T ss_dssp             HHHCHHHHGGGHH-HHHHHHHHHHTC-SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC
T ss_pred             HHhCHHHHHHHHH-HHHHHHHHHccC-CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcC
Confidence            9999988765544 689999999999 89999999999999999865444544321  45555555552           


Q ss_pred             ccccch---------hhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHH
Q 012448          264 NSATET---------ILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQ  334 (463)
Q Consensus       264 ~~~~dp---------l~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~e  334 (463)
                      +..+|+         -+|.-+..+.+.+...     +.+    ...|.++..+.+.+.+++...+.+|++++|.|+....
T Consensus       321 d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~-----~~~----~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~  391 (852)
T 4fdd_A          321 DVEGGSGGDDTISDWNLRKCSAAALDVLANV-----YRD----ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM  391 (852)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHH-----HGG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH
T ss_pred             CcccccccccccccchHHHHHHHHHHHHHHh-----ccH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch
Confidence            211111         1243344444444331     011    1133344444445678899999999999999998554


Q ss_pred             HHHHHhhcCchhHHHHHHHHHhhccchh---hHhHHhhhHHHhc
Q 012448          335 GATLLLLCLPPAARHVIDAAFDRQGHGK---QLAALHGLANIAG  375 (463)
Q Consensus       335 Gk~~L~~~~~~~~~~~l~~~~~~~~~~~---k~r~L~al~~Il~  375 (463)
                      .  .+.    +.+..++........+..   |-.+..+++.+..
T Consensus       392 ~--~~~----~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~  429 (852)
T 4fdd_A          392 Q--GMI----PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH  429 (852)
T ss_dssp             H--HHG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred             H--HHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            2  222    244555665555555432   6667777777665

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.27  E-value=8.5e-10  Score=116.05  Aligned_cols=349  Identities=11%  Similarity=0.036  Sum_probs=232.8

Q ss_pred             CCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCC----------CcchHHHHHHHHHHHhccccccc
Q 012448            7 MDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPD----------VPGLEDTLVVCLERIFKTKYGAS   76 (463)
Q Consensus         7 ~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~----------~~~~~~~~~~vL~~il~~~~~~~   76 (463)
                      ..|...+.+.--.+..-|.     .=..+.+..-+|.|+.+|+..+.          .++.+..+...|..+-..-....
T Consensus        43 ~~~~~~~~~~ll~~~~~~~-----~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~  117 (458)
T 3nmz_A           43 THDKDDMSRTLLAMSSSQD-----SCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDK  117 (458)
T ss_dssp             --CCHHHHHHHHHHHSSTT-----HHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCH
T ss_pred             CCCHHHHHHHHHHHHcCCc-----HHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchh
Confidence            3444444444444444422     22445678889999999996431          25777777778888754331110


Q ss_pred             ----------hh---hchHHHHHHhhcCCC--HH-----HHH-------HHHHHHHHHHhCCchhHHHHHHHhhccCcHH
Q 012448           77 ----------LI---PHYMPFVQVGLTADS--HS-----VKR-------LACKTVTCLLEDSDLEASCALQLLIDYEIYP  129 (463)
Q Consensus        77 ----------l~---~~~~~~l~~gL~h~~--~~-----Vr~-------Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~  129 (463)
                                +.   +.|.+.+.+.+.++.  ..     |++       -|+|+|+++..+    +. ..+.+.+.|.++
T Consensus       118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~----~e-~R~~i~~~G~l~  192 (458)
T 3nmz_A          118 RGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD----EE-HRHAMNELGGLQ  192 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS----HH-HHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC----HH-HHHHHHHCCCHH
Confidence                      11   122344566777763  22     777       889999998554    34 667888999999


Q ss_pred             HHHHhhc-----------CCchHHHHHHHHHHHHHhCCCCCccccc--cCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448          130 LLLDCLI-----------NGNEEVATASMDAIKKLAGFPNGIDIIF--PADNKAATDLGNLVAQCSSLGRVRVLSLIVKL  196 (463)
Q Consensus       130 ~li~~l~-----------d~d~~va~~A~~~L~~lak~~~~l~~l~--~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i  196 (463)
                      .++..|.           .++.++.+.|..+|..|+...+.....+  ..+.++  .|.+++.+.++.+|..++..+.++
T Consensus       193 ~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp--~LV~LL~s~~~~v~~~A~~aL~nL  270 (458)
T 3nmz_A          193 AIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR--ALVAQLKSESEDLQQVIASVLRNL  270 (458)
T ss_dssp             HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH--HHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH--HHHHHHhCCCHHHHHHHHHHHHHH
Confidence            9998884           1346789999999999998876554333  445577  777788888999999999999999


Q ss_pred             Hhc-CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHH-hcchHHHHHHHhcccccch--hh
Q 012448          197 FSV-SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLS-RTTLLQLLCSLIGNSATET--IL  271 (463)
Q Consensus       197 a~~-S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~-~~gi~~~L~~~i~~~~~dp--l~  271 (463)
                      +.. +++.-+.+++.|.++.++..|..+.|.-++.+++..|..|+. ......-+. ..|++..|++.+......+  -+
T Consensus       271 s~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v  350 (458)
T 3nmz_A          271 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAI  350 (458)
T ss_dssp             TSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHH
T ss_pred             hcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHH
Confidence            985 678889999999999999975443788889999999999999 655554454 8999999999998654331  12


Q ss_pred             hhhhhhHhhhhcc----ccc-cchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhcCch
Q 012448          272 RSRAIMISGRLLS----KDD-SHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLCLPP  345 (463)
Q Consensus       272 r~~aili~g~i~~----f~~-~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~  345 (463)
                      +..+.-+...+..    ..+ .-.++   -..++|.+++    ++.+++..++..|.|+|++++. +.+.++.+...  +
T Consensus       351 ~~~A~~aL~nLs~~~a~~~~~~~~i~---~~G~i~~Lv~----LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--G  421 (458)
T 3nmz_A          351 IESGGGILRNVSSLIATNEDHRQILR---ENNCLQTLLQ----HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM--G  421 (458)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHH---HTTHHHHHHH----HSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHHHhcccCCHHHHHHHH---HcccHHHHHH----HHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHC--C
Confidence            2233333333321    111 11111   1244666555    5678889999999999999994 78888888763  3


Q ss_pred             hHHHHHHHHHhhccchhhHhHHhhhHHHhcCC
Q 012448          346 AARHVIDAAFDRQGHGKQLAALHGLANIAGKT  377 (463)
Q Consensus       346 ~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~  377 (463)
                      .+..+++.. ..-....|..|..+|.+|+...
T Consensus       422 ~I~~Lv~LL-~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          422 AVSMLKNLI-HSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHHHTTT-TCSSHHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCC
Confidence            333333321 1111122778888999988753

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.26  E-value=1.8e-09  Score=116.63  Aligned_cols=348  Identities=15%  Similarity=0.095  Sum_probs=221.6

Q ss_pred             chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhC
Q 012448           76 SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAG  155 (463)
Q Consensus        76 ~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak  155 (463)
                      .....-.+.|+..|.++++.++.-|++++..+..++   .. ..+.+.+.|.+|.++..|..++..+...|+.+|..|+.
T Consensus        44 ~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~---~~-~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~  119 (584)
T 3l6x_A           44 NWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN---DK-VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF  119 (584)
T ss_dssp             CCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS
T ss_pred             CcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC---hH-HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence            345556899999999999999999999999998766   55 66788899999999999999999999999999999998


Q ss_pred             C--CCCccccccCCCcchhhHhhHhhc-CCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhc------------
Q 012448          156 F--PNGIDIIFPADNKAATDLGNLVAQ-CSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGV------------  220 (463)
Q Consensus       156 ~--~~~l~~l~~~~~~~~~~L~~~~~~-~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL------------  220 (463)
                      +  ++.-..|...++++  .|.+++.+ .+..++..+..++.+++.. ++.-..+++ +.++.|+..+            
T Consensus       120 ~~~~~nk~~I~~~GaIp--~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~  195 (584)
T 3l6x_A          120 GRDQDNKIAIKNCDGVP--ALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPN  195 (584)
T ss_dssp             SSCHHHHHHHHHTTHHH--HHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----
T ss_pred             cCCHHHHHHHHHcCCHH--HHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccc
Confidence            6  33446888999998  88877776 5678899999999999984 555555554 4588888765            


Q ss_pred             -----CCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhc-chHHHHHHHhccc-----ccchhhhhhhhhHhhhhcccc--
Q 012448          221 -----SKKNDTLETLSILELLYELAE-IQHSAEFLSRT-TLLQLLCSLIGNS-----ATETILRSRAIMISGRLLSKD--  286 (463)
Q Consensus       221 -----~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~-gi~~~L~~~i~~~-----~~dpl~r~~aili~g~i~~f~--  286 (463)
                           .+.+|.-|+.||..+|+.|+. .+++.+.+.+. |+++.|+.++.+.     .++.. ...++.+..-+.+.-  
T Consensus       196 ~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~-~enav~aL~NLs~~~~~  274 (584)
T 3l6x_A          196 EDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKL-VENCVCLLRNLSYQVHR  274 (584)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHH-HHHHHHHHHHHHTTHHH
T ss_pred             ccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHH-HHHHHHHHHHhhccccc
Confidence                 123589999999999999999 66788888874 7778999999753     12222 223443321111100  


Q ss_pred             ---ccchhcch----------hhhhh-----hHHHHHHHhccc-cCCChhhhhHHHHHHHhhcCCH----HH-HHHHhhc
Q 012448          287 ---DSHMFIDE----------SSAKT-----VISAIDGRLGFL-QSQDSDECESALEALGQIGSSI----QG-ATLLLLC  342 (463)
Q Consensus       287 ---~~~~~~~~----------~~~k~-----~p~~l~~~f~~~-~~~d~~~~~~A~dtlG~Igss~----eG-k~~L~~~  342 (463)
                         +...|...          ...++     .|..+..++.++ .+.++.+++.|+|+|..+++..    +. ...+.+ 
T Consensus       275 e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~-  353 (584)
T 3l6x_A          275 EIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ-  353 (584)
T ss_dssp             HSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS-
T ss_pred             cccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH-
Confidence               00000000          00000     122223233334 3567899999999999997632    22 223332 


Q ss_pred             CchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHhcCCHH
Q 012448          343 LPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAE  422 (463)
Q Consensus       343 ~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~qpF~e  422 (463)
                       ...+..+++. ...-....+..+..+|.++....+  ++..++  .. .+.+++ +-.... ...|..      .--+|
T Consensus       354 -~~glp~Lv~L-L~s~~~~v~~~A~~aL~nLs~~~~--~~~~I~--~g-~ip~LV-~LL~~~-~~~~~~------~~s~~  418 (584)
T 3l6x_A          354 -EKALSAIADL-LTNEHERVVKAASGALRNLAVDAR--NKELIG--KH-AIPNLV-KNLPGG-QQNSSW------NFSED  418 (584)
T ss_dssp             -HHHHHHHHHG-GGCSCHHHHHHHHHHHHHHHTTCS--CHHHHH--HH-HHHHHH-HTSSSS-SCSGGG------TCCHH
T ss_pred             -cCcHHHHHHH-HcCCCHHHHHHHHHHHHHHhCChh--HHHHHH--hC-CHHHHH-HHhcCC-cccccc------cchHH
Confidence             2233333332 222222227788889999887542  122221  11 122222 111100 000100      00368


Q ss_pred             HHHHHHHHHHHhhcC-chhHHHhhhcc
Q 012448          423 IRLAGYRMITGLVAR-PWCLMELCSKQ  448 (463)
Q Consensus       423 lr~A~~~~l~~l~~~-~Wg~~~i~~~~  448 (463)
                      +..++.+.|..|+.. +=..+.|....
T Consensus       419 v~~~a~~tL~NL~a~~~~~~~~I~~~g  445 (584)
T 3l6x_A          419 TVISILNTINEVIAENLEAAKKLRETQ  445 (584)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence            888999999888765 44455555443

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.23  E-value=2.9e-10  Score=115.80  Aligned_cols=263  Identities=13%  Similarity=0.075  Sum_probs=202.2

Q ss_pred             HHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccC---------CCCcchHHHHHHHHHHHhcccc-cc-ch--
Q 012448           11 NQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTK---------PDVPGLEDTLVVCLERIFKTKY-GA-SL--   77 (463)
Q Consensus        11 ~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~---------~~~~~~~~~~~~vL~~il~~~~-~~-~l--   77 (463)
                      .++-+|+.=+.|--+  .++.=+.+++..-++.|+..|...         .+.+..+..++.+|..+-.... .. .+  
T Consensus        47 ~~~~~A~~aL~nls~--d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           47 HQICPAVCVLMKLSF--DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GTHHHHHHHHHHHHT--SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            355677776666633  355555667889999999999531         1225577788889998832222 11 22  


Q ss_pred             hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhh-cCCchHHHHHHHHHHHHHhCC
Q 012448           78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCL-INGNEEVATASMDAIKKLAGF  156 (463)
Q Consensus        78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l-~d~d~~va~~A~~~L~~lak~  156 (463)
                      .....+.|+.-|.++++.||+-++++++.+..+.+  +. ..+.+.+.|.++.++..| ..++.++.+.|+.+|..|+.+
T Consensus       125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~--~~-~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~  201 (354)
T 3nmw_A          125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD--VN-SKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH  201 (354)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC--HH-HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred             cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC--HH-HHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence            23458999999999999999999999999987521  33 566788999999999975 567889999999999999986


Q ss_pred             CCCc-cccc-cCCCcchhhHhhHhhcCCc----hhHHHHHHHHHHHHh---cCHHHHHHHHhhccHHHHHhhcCCCCcHH
Q 012448          157 PNGI-DIIF-PADNKAATDLGNLVAQCSS----LGRVRVLSLIVKLFS---VSRSVASVIFKANLLTLLEEGVSKKNDTL  227 (463)
Q Consensus       157 ~~~l-~~l~-~~~~~~~~~L~~~~~~~~~----~vR~Rv~el~v~ia~---~S~~~~~~v~~sgl~~~ll~eL~~~~DvL  227 (463)
                      .++. ..+. ..+.++  .|.+++...++    .++..+.-++.+++.   .+++.-+.+.+.|.++.++..|.+ .|.-
T Consensus       202 ~~~nk~~i~~~~Gai~--~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~  278 (354)
T 3nmw_A          202 CTENKADICAVDGALA--FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLT  278 (354)
T ss_dssp             CHHHHHHHHHSTTHHH--HHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC-SCHH
T ss_pred             ChhhhHHHHHhcCcHH--HHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC-CChH
Confidence            6443 3444 778888  78867765554    388888999999998   589999999999999999999999 8889


Q ss_pred             HHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhc
Q 012448          228 ETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLL  283 (463)
Q Consensus       228 v~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~  283 (463)
                      +|.+|+-.|..++. +++..+++.+.|++..|++++..  .++-++..+..+..-+.
T Consensus       279 v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s--~~~~i~~~A~~aL~nL~  333 (354)
T 3nmw_A          279 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS--KHKMIAMGSAAALRNLM  333 (354)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC--SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHH
Confidence            99999999999996 89999999999999999999865  34434444444444443

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.16  E-value=3.9e-10  Score=112.13  Aligned_cols=189  Identities=14%  Similarity=0.073  Sum_probs=158.9

Q ss_pred             ChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHH-ccccCCCCcchHHHHHHHHHHHhccccccc-----hhhchH
Q 012448            9 DSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILN-TLQTKPDVPGLEDTLVVCLERIFKTKYGAS-----LIPHYM   82 (463)
Q Consensus         9 ~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~-~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-----l~~~~~   82 (463)
                      +.+.-..++..|+++  ..+.+.+.+|+....+|.|+. +|++.+  +..++.++.+|..+-+  ..+.     +.....
T Consensus        53 ~~e~k~~Al~~L~~l--v~~~dna~~~~~~G~l~~Lv~~lL~s~~--~~vr~~Aa~~Lg~ia~--~n~~~~~~vv~~g~l  126 (296)
T 1xqr_A           53 DQQEREGALELLADL--CENMDNAADFCQLSGMHLLVGRYLEAGA--AGLRWRAAQLIGTCSQ--NVAAIQEQVLGLGAL  126 (296)
T ss_dssp             HHHHHHHHHHHHHHH--HTSHHHHHHHHHTTHHHHHHHTTTTCSS--HHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHH
T ss_pred             CHHHHHHHHHHHHHH--HhChhhHHHHHHcCCHHHHHHHHHcCCC--HHHHHHHHHHHHHHHh--CCHHHHHHHHHCCCH
Confidence            345666777777777  334578999999999999999 999866  8899999999999943  3322     233568


Q ss_pred             HHHHHhhcC-CCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-
Q 012448           83 PFVQVGLTA-DSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-  160 (463)
Q Consensus        83 ~~l~~gL~h-~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-  160 (463)
                      +.|...|++ +++.||+-++|+|+.++++.   .. ..+.+.+.+.++.++.+|.+++..+.+.|..+|+.++...+.. 
T Consensus       127 ~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~---~~-~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~  202 (296)
T 1xqr_A          127 RKLLRLLDRDACDTVRVKALFAISCLVREQ---EA-GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK  202 (296)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHcCC---cH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHH
Confidence            899999995 68999999999999999987   55 6778888999999999999999999999999999998876654 


Q ss_pred             cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHh
Q 012448          161 DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFK  209 (463)
Q Consensus       161 ~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~  209 (463)
                      +.+++.++++  .|..++.+.+..+|..++..+.+|++..+.....|..
T Consensus       203 ~~vv~~g~i~--~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~  249 (296)
T 1xqr_A          203 GTLCSMGMVQ--QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  249 (296)
T ss_dssp             HHHHHTTHHH--HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHcCCHH--HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhc
Confidence            7888999998  8888888999999999999999999998877776653

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.15  E-value=1.9e-09  Score=116.33  Aligned_cols=256  Identities=14%  Similarity=0.137  Sum_probs=176.1

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL  119 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~  119 (463)
                      ..+.|...|++.|  +.++..+...|..+    ...++.+.+.+.+..+|.|++|.||.-|+.+++++.+..   ..   
T Consensus        87 ~~n~l~kdL~~~n--~~ir~~AL~~L~~i----~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~---p~---  154 (591)
T 2vgl_B           87 AVNSFVKDCEDPN--PLIRALAVRTMGCI----RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN---AQ---  154 (591)
T ss_dssp             THHHHGGGSSSSS--HHHHHHHHHHHHTC----CSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS---CC---
T ss_pred             HHHHHHHHcCCCC--HHHHHHHHHHHHcC----ChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC---hh---
Confidence            4456666677655  66665554444444    466778888899999999999999999999999998865   22   


Q ss_pred             HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448          120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS  198 (463)
Q Consensus       120 ~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~  198 (463)
                       .+.++++++.+..+|.|++..|...|+.+|.+++++.++. ..-+.++.+.  .|-+.+..+++-.+++++.++..++.
T Consensus       155 -~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~--~Ll~~l~~~~~~~q~~il~~l~~l~~  231 (591)
T 2vgl_B          155 -MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNIN--KLLTALNECTEWGQIFILDCLSNYNP  231 (591)
T ss_dssp             -CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHH--HHHHHHHHCCHHHHHHHHHHHHTSCC
T ss_pred             -hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHH--HHHHcCCCCCchHHHHHHHHHHHhCC
Confidence             2234578899999999999999999999999999887643 1112223343  45546667899999999999988887


Q ss_pred             cCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh----hHHHHHHHHhcchHHHHHHHhcccccchhhhhh
Q 012448          199 VSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE----IQHSAEFLSRTTLLQLLCSLIGNSATETILRSR  274 (463)
Q Consensus       199 ~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~----t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~  274 (463)
                      .+++..     ..+++.+...+.+ .|.-|+..|+.++..++.    .+++.+-+. ..+...|+... +  .||-+|..
T Consensus       232 ~~~~~~-----~~~l~~l~~~l~~-~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~-~--~d~~vr~~  301 (591)
T 2vgl_B          232 KDDREA-----QSICERVTPRLSH-ANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLL-S--GEPEVQYV  301 (591)
T ss_dssp             CSHHHH-----HHHHHHHTTCSCS-STTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHT-T--SCHHHHHH
T ss_pred             CChHHH-----HHHHHHHHHHHcC-CChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHh-c--CCccHHHH
Confidence            766543     3578888999999 889999999999999874    334444322 33345555443 2  67777766


Q ss_pred             hhhHhhhhccc-cccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCC
Q 012448          275 AIMISGRLLSK-DDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSS  332 (463)
Q Consensus       275 aili~g~i~~f-~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss  332 (463)
                      ++...+.+... .+++       ..    .+..+| ...+.+..++.-|+|+|+.++..
T Consensus       302 aL~~l~~i~~~~p~~~-------~~----~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~  348 (591)
T 2vgl_B          302 ALRNINLIVQKRPEIL-------KQ----EIKVFF-VKYNDPIYVKLEKLDIMIRLASQ  348 (591)
T ss_dssp             HHHHHHHHHHHCCSTT-------TT----CTTTTS-CCTTSCHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHhChHHH-------HH----HHHhhe-eccCChHHHHHHHHHHHHHHCCh
Confidence            66666665541 1111       00    011111 12233467777777777777753

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.14  E-value=8.7e-10  Score=115.98  Aligned_cols=257  Identities=13%  Similarity=0.066  Sum_probs=196.2

Q ss_pred             HHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccC---------CCCcchHHHHHHHHHHHhcccccc--ch--hh
Q 012448           13 LLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTK---------PDVPGLEDTLVVCLERIFKTKYGA--SL--IP   79 (463)
Q Consensus        13 ~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~---------~~~~~~~~~~~~vL~~il~~~~~~--~l--~~   79 (463)
                      .-||+.=+.|-  +.+++.=..+++.--++.|+..|...         .+.+..+..++.+|..+-......  .+  ..
T Consensus       165 ~~qAv~aL~nl--s~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~  242 (458)
T 3nmz_A          165 ICPAVCVLMKL--SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK  242 (458)
T ss_dssp             THHHHHHHHHH--TTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHh--cCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcC
Confidence            34555556665  11344555566888899999999521         122556777888888874322211  23  23


Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhh-cCCchHHHHHHHHHHHHHhCCCC
Q 012448           80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCL-INGNEEVATASMDAIKKLAGFPN  158 (463)
Q Consensus        80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l-~d~d~~va~~A~~~L~~lak~~~  158 (463)
                      ...+.|+.-|.++++.|++-++|+|+++..+.+  .. ..+.+.+.|.++.++..| ..++..+.+.|+.+|..|+.+.+
T Consensus       243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~--~~-~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~  319 (458)
T 3nmz_A          243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRAD--VN-SKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  319 (458)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCC--HH-HHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH
T ss_pred             CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC--HH-HHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH
Confidence            458999999999999999999999999987521  34 567788999999999975 55788999999999999998554


Q ss_pred             Cc-cccc-cCCCcchhhHhhHhhcCCch----hHHHHHHHHHHHHh---cCHHHHHHHHhhccHHHHHhhcCCCCcHHHH
Q 012448          159 GI-DIIF-PADNKAATDLGNLVAQCSSL----GRVRVLSLIVKLFS---VSRSVASVIFKANLLTLLEEGVSKKNDTLET  229 (463)
Q Consensus       159 ~l-~~l~-~~~~~~~~~L~~~~~~~~~~----vR~Rv~el~v~ia~---~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~  229 (463)
                      +. ..+. ..+.++  .|.+++...++.    ++..+.-++.+|+.   .+++.-+.+.+.|.++.++..|.+ .+.-++
T Consensus       320 ~nk~~I~~~~Gal~--~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~-~~~~v~  396 (458)
T 3nmz_A          320 ENKADICAVDGALA--FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIV  396 (458)
T ss_dssp             HHHHHHHHSTTHHH--HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC-SCHHHH
T ss_pred             HHHHHHHHhcCcHH--HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC-CChHHH
Confidence            33 3444 778888  788677666553    88899999999998   589999999999999999999999 888899


Q ss_pred             HhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHh
Q 012448          230 LSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMIS  279 (463)
Q Consensus       230 lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~  279 (463)
                      .+|+-.|..++. +++..+++.+.|++..|++++..  .++-++..|..+.
T Consensus       397 ~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s--~~~~v~~~Aa~AL  445 (458)
T 3nmz_A          397 SNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS--KHKMIAMGSAAAL  445 (458)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC--SSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHH
Confidence            999999999995 89999999999999999999864  3444443444333

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.13  E-value=7.5e-09  Score=108.97  Aligned_cols=352  Identities=13%  Similarity=0.110  Sum_probs=201.7

Q ss_pred             cchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHh
Q 012448           55 PGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDC  134 (463)
Q Consensus        55 ~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~  134 (463)
                      +..++.++..|.++.....+..+.+.+.+.+....+++++.+|..++..++.+..+..   . .    ....+++.+...
T Consensus       101 ~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~---~-~----~~~~l~~~l~~l  172 (588)
T 1b3u_A          101 TVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS---S-A----VKAELRQYFRNL  172 (588)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC---H-H----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC---H-H----HHHHHHHHHHHH
Confidence            4455555555555544433333333344555554555555556555555555554431   1 0    013577888888


Q ss_pred             hcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHH
Q 012448          135 LINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLT  214 (463)
Q Consensus       135 l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~  214 (463)
                      +.|++..|...|+.+|..+++..++ + .+.+..++  .|...+...++.+|..+.+.+..++...++-   -....+++
T Consensus       173 ~~d~~~~VR~~a~~~l~~l~~~~~~-~-~~~~~l~~--~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~  245 (588)
T 1b3u_A          173 CSDDTPMVRRAAASKLGEFAKVLEL-D-NVKSEIIP--MFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMP  245 (588)
T ss_dssp             HTCSCHHHHHHHHHHHHHHHHTSCH-H-HHHHTHHH--HHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHhcH-H-hHHHHHHH--HHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHH
Confidence            8999999999999999999876542 1 12234555  6665677788999999999999998764321   12235778


Q ss_pred             HHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccc-cccchhcc
Q 012448          215 LLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSK-DDSHMFID  293 (463)
Q Consensus       215 ~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f-~~~~~~~~  293 (463)
                      .+...+++ +|.-+|..+++.+..++..-..-.  ....++..+...+.+  .+|.+|.-+....|.+... +.-..   
T Consensus       246 ~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~~---  317 (588)
T 1b3u_A          246 TLRQAAED-KSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKD--CEAEVRAAASHKVKEFCENLSADCR---  317 (588)
T ss_dssp             HHHHHHTC-SSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHTSCTTTH---
T ss_pred             HHHHHccC-CCHHHHHHHHHHHHHHHHHhCccc--chhHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHhChhhh---
Confidence            88888888 999999999999999998422111  234567777777764  5677776555555544431 11100   


Q ss_pred             hhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHH
Q 012448          294 ESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANI  373 (463)
Q Consensus       294 ~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~I  373 (463)
                        .....+.++..+.+.+++++...+.+|+++||.++........+..    ... .+......-...-|..++.+++.+
T Consensus       318 --~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~----l~p-~l~~~l~d~~~~Vr~~a~~~l~~l  390 (588)
T 1b3u_A          318 --ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH----LLP-LFLAQLKDECPEVRLNIISNLDCV  390 (588)
T ss_dssp             --HHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHH----THH-HHHHHHTCSCHHHHHHHHTTCHHH
T ss_pred             --hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHH----HHH-HHHHHhCCCchHHHHHHHHHHHHH
Confidence              0011222333333456788899999999999999864432222111    111 111222111112277777777777


Q ss_pred             hcCCCchh--hhh-------hhhhHHHHHHHHHH---HHHhhCCCC-----ChhHHHHHHh-cCCHHHHHHHHHHHHHhh
Q 012448          374 AGKTRSED--KII-------LNADAEESLRHLIY---EVASRSSKL-----TPSGLFLSVL-QQAAEIRLAGYRMITGLV  435 (463)
Q Consensus       374 l~~~r~~~--~~i-------l~~~~e~~l~~~~y---e~~~~~~~~-----~p~~~~~~~~-qpF~elr~A~~~~l~~l~  435 (463)
                      ...-+.+.  +.+       +++... +.+...+   ..+...++.     .-+..++... .+.+++|.++...+..++
T Consensus       391 ~~~~~~~~~~~~~lp~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~  469 (588)
T 1b3u_A          391 NEVIGIRQLSQSLLPAIVELAEDAKW-RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV  469 (588)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHTCSSH-HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            65321110  000       001000 1111111   112121111     1234456666 788999999999999999


Q ss_pred             cC
Q 012448          436 AR  437 (463)
Q Consensus       436 ~~  437 (463)
                      ..
T Consensus       470 ~~  471 (588)
T 1b3u_A          470 EK  471 (588)
T ss_dssp             HH
T ss_pred             HH
Confidence            86

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.12  E-value=9.9e-10  Score=112.13  Aligned_cols=310  Identities=15%  Similarity=0.103  Sum_probs=199.5

Q ss_pred             HHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCC--CHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 012448           43 VILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTAD--SHSVKRLACKTVTCLLEDSDLEASCALQ  120 (463)
Q Consensus        43 ~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~--~~~Vr~Lal~~l~~i~~~~~~~~~~~~~  120 (463)
                      .|+..|.+.+  +.. .+++.++..+.....|..-.+.+.+.|..++.++  ++.+|+.++..++.+.++...  . ...
T Consensus        94 ~ll~~l~~~~--~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~-~~~  167 (462)
T 1ibr_B           94 YVLQTLGTET--YRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--E-QLQ  167 (462)
T ss_dssp             HHHHHTTCCC--SSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCG--G-GTG
T ss_pred             HHHHHhCCCC--chh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCc--h-hhH
Confidence            4677777654  566 8888888888655444334578899999999999  999999999999999875311  1 111


Q ss_pred             HhhccCcHHHHHHhhcCC--chHHHHHHHHHHHHHhCCCC-Ccc-ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448          121 LLIDYEIYPLLLDCLING--NEEVATASMDAIKKLAGFPN-GID-IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL  196 (463)
Q Consensus       121 ~~~~~~l~~~li~~l~d~--d~~va~~A~~~L~~lak~~~-~l~-~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i  196 (463)
                      ... ..+++.++.++.++  +..|...|++++..+...-. ..+ ..+...+++  .|.+.+...+..+|..+++++..+
T Consensus       168 ~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~~~~vr~~~~~~l~~l  244 (462)
T 1ibr_B          168 DKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ--VVCEATQCPDTRVRVAALQNLVKI  244 (462)
T ss_dssp             GGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHH--HHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             hHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH--HHHHhcCCCCHHHHHHHHHHHHHH
Confidence            111 24888999999999  68999999999998764321 000 000011122  344455667889999999999999


Q ss_pred             HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHh---------------------cchH
Q 012448          197 FSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSR---------------------TTLL  255 (463)
Q Consensus       197 a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~---------------------~gi~  255 (463)
                      +...++.+......++++.++..+++ .|.-++..+++.+..+++.........+                     ..++
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  323 (462)
T 1ibr_B          245 MSLYYQYMETYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV  323 (462)
T ss_dssp             HHHCGGGCTTTTTTTHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhcc
Confidence            99887765443333788888888888 8888999999999999985422221111                     2355


Q ss_pred             HHHHHHhcccc-----cchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhc
Q 012448          256 QLLCSLIGNSA-----TETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIG  330 (463)
Q Consensus       256 ~~L~~~i~~~~-----~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Ig  330 (463)
                      ..|...+.+.+     .++-.|.-+....+.+...     +. +   ...|.++..+.+.+.+++...+.+|+.++|.|+
T Consensus       324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~-----~~-~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~  394 (462)
T 1ibr_B          324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC-----CE-D---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL  394 (462)
T ss_dssp             HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHH-----TT-T---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhcccccccccchHHHHHHHHHHHHHHh-----cc-H---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence            55666665432     2233343344444443321     01 1   113334444444667889999999999999999


Q ss_pred             CCHHHHHHHhhcCchhHHHHHHHHHhhccch-h--hHhHHhhhHHHhcC
Q 012448          331 SSIQGATLLLLCLPPAARHVIDAAFDRQGHG-K--QLAALHGLANIAGK  376 (463)
Q Consensus       331 ss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~-~--k~r~L~al~~Il~~  376 (463)
                      ..... ..+    .+.+..++..+.....+. +  |.+|..+++.+...
T Consensus       395 ~~~~~-~~~----~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          395 EGPEP-SQL----KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             SSSCT-TTT----CTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcH-HHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            74321 111    122344555555544432 2  77888888888764

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.12  E-value=2.4e-09  Score=109.02  Aligned_cols=271  Identities=11%  Similarity=0.016  Sum_probs=195.8

Q ss_pred             hcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC-----------CchHHHHHHHHHHHHHhCCC
Q 012448           89 LTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN-----------GNEEVATASMDAIKKLAGFP  157 (463)
Q Consensus        89 L~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d-----------~d~~va~~A~~~L~~lak~~  157 (463)
                      .-.|+...+..|+|+|+++..+.    . ..+.+++.|.++.++..|..           .+.++.+.|+.+|..|+...
T Consensus        41 ~~~~~~~~~~~A~~aL~nls~d~----e-~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~  115 (354)
T 3nmw_A           41 MPAPVEHQICPAVCVLMKLSFDE----E-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD  115 (354)
T ss_dssp             CCCGGGGTHHHHHHHHHHHHTSH----H-HHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSC
T ss_pred             CCCcchHHHHHHHHHHHHHcCCH----H-HHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCC
Confidence            44555677888999999998753    3 67788999999999988842           24678999999999999887


Q ss_pred             CCccccc--cCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhc-CHHHHHHHHhhccHHHHHhhc-CCCCcHHHHHhHH
Q 012448          158 NGIDIIF--PADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSV-SRSVASVIFKANLLTLLEEGV-SKKNDTLETLSIL  233 (463)
Q Consensus       158 ~~l~~l~--~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~-S~~~~~~v~~sgl~~~ll~eL-~~~~DvLv~lnal  233 (463)
                      +.....+  ..+.++  .|.+++.+.++.+|..+...+.+++.. +++.-+.+++.|.++.++..| .+ .|.-++.+++
T Consensus       116 ~~~k~~i~~~~GaIp--~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~-~~~~~~~~A~  192 (354)
T 3nmw_A          116 VANKATLCSMKGCMR--ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV-KKESTLKSVL  192 (354)
T ss_dssp             HHHHHHHHHCHHHHH--HHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHH--HHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC-CCHHHHHHHH
Confidence            6554333  445577  788788888999999999999999986 688889999999999999975 55 7888899999


Q ss_pred             HHHHHHHh-hHHHHHHHH-hcchHHHHHHHhcccccch--hhhhhhhhHhhhhcc----ccc-cchhcchhhhhhhHHHH
Q 012448          234 ELLYELAE-IQHSAEFLS-RTTLLQLLCSLIGNSATET--ILRSRAIMISGRLLS----KDD-SHMFIDESSAKTVISAI  304 (463)
Q Consensus       234 ell~eLa~-t~~g~~~L~-~~gi~~~L~~~i~~~~~dp--l~r~~aili~g~i~~----f~~-~~~~~~~~~~k~~p~~l  304 (463)
                      ..|..|+. ......-+. ..|++..|++.+......+  -++..+.-+...+..    ..+ .-.+.   -..++|.++
T Consensus       193 ~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~---~~g~i~~Lv  269 (354)
T 3nmw_A          193 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR---ENNCLQTLL  269 (354)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH---TTTHHHHHH
T ss_pred             HHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH---HcCCHHHHH
Confidence            99999999 656555555 7999999999997654321  123233333333332    111 11112   124466666


Q ss_pred             HHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCC
Q 012448          305 DGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKT  377 (463)
Q Consensus       305 ~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~  377 (463)
                      +    ++.+++..++..|.|+|++++. +.+.++.+...  +.+..+++.. ..-....|..|..+|.+|+...
T Consensus       270 ~----lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--G~i~~Lv~LL-~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          270 Q----HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM--GAVSMLKNLI-HSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             H----HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHT--THHHHHHTTT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred             H----HHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHC--CCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCC
Confidence            5    4577889999999999999995 78888888763  3444443322 1111122788899999999864

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.11  E-value=3.1e-09  Score=111.87  Aligned_cols=339  Identities=13%  Similarity=0.084  Sum_probs=210.0

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL  119 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~  119 (463)
                      .+|.+...+++.+  +..++.++.+|..+.....+....+.+.+.+...+++++..||..++..++.+....+.  . . 
T Consensus       204 l~~~l~~~~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~-~-  277 (588)
T 1b3u_A          204 IIPMFSNLASDEQ--DSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--E-I-  277 (588)
T ss_dssp             HHHHHHHHHTCSC--HHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--H-H-
T ss_pred             HHHHHHHHhcCCc--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--c-c-
Confidence            3566666665543  56666777777776554444445556777788888888888888888888887653311  1 1 


Q ss_pred             HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc--cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448          120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI--DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF  197 (463)
Q Consensus       120 ~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l--~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia  197 (463)
                         ....+++.++..+.|++..|...|..+|..+++..+.-  ...+-+..++  .+.+.+...+..+|..++..+..++
T Consensus       278 ---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p--~l~~~l~d~~~~vR~~a~~~l~~l~  352 (588)
T 1b3u_A          278 ---TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILP--CIKELVSDANQHVKSALASVIMGLS  352 (588)
T ss_dssp             ---HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHH--HHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred             ---chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHH--HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence               12367899999999999999999999999998764321  0012234455  6666777888999999998888887


Q ss_pred             hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhh
Q 012448          198 SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIM  277 (463)
Q Consensus       198 ~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ail  277 (463)
                      ..-.+-   .....+++.++..+++ +|.-||.++++-+..+++.-..-.  ....++..|...+.+  .++-+|.-++-
T Consensus       353 ~~~~~~---~~~~~l~p~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~lp~l~~~~~d--~~~~vr~~~~~  424 (588)
T 1b3u_A          353 PILGKD---NTIEHLLPLFLAQLKD-ECPEVRLNIISNLDCVNEVIGIRQ--LSQSLLPAIVELAED--AKWRVRLAIIE  424 (588)
T ss_dssp             HHHCHH---HHHHHTHHHHHHHHTC-SCHHHHHHHHTTCHHHHHHSCHHH--HHHHHHHHHHHHHTC--SSHHHHHHHHH
T ss_pred             HHhhHh---HHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHhcC--CCchHHHHHHH
Confidence            542211   1223578888899999 889999999999999887311111  123556666666543  34445533433


Q ss_pred             Hhhhhcc-ccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHh
Q 012448          278 ISGRLLS-KDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFD  356 (463)
Q Consensus       278 i~g~i~~-f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~  356 (463)
                      ..+.+.. .|.  .+.       .+.++..++..+.+++..++..|+.++|.++........+        ..++..+..
T Consensus       425 ~l~~l~~~~~~--~~~-------~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--------~~llp~l~~  487 (588)
T 1b3u_A          425 YMPLLAGQLGV--EFF-------DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAH--------ATIIPKVLA  487 (588)
T ss_dssp             HHHHHHHHHCG--GGC-------CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHH--------HHTHHHHHH
T ss_pred             HHHHHHHHcCH--HHH-------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHH--------HHHHHHHHH
Confidence            3333322 111  011       1233444445567888999999999999998754322111        222222222


Q ss_pred             hccch---hhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHH
Q 012448          357 RQGHG---KQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMIT  432 (463)
Q Consensus       357 ~~~~~---~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~  432 (463)
                      ...+.   .|..++.+++.+...-  .        .+. ..    .        .-+..++..+ .|.|++|.++...|.
T Consensus       488 ~~~~~~~~~R~~a~~~l~~l~~~~--~--------~~~-~~----~--------~~~~~l~~~l~d~~~~Vr~~a~~~l~  544 (588)
T 1b3u_A          488 MSGDPNYLHRMTTLFCINVLSEVC--G--------QDI-TT----K--------HMLPTVLRMAGDPVANVRFNVAKSLQ  544 (588)
T ss_dssp             TTTCSCHHHHHHHHHHHHHHHHHH--H--------HHH-HH----H--------HTHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             HhhCCCHHHHHHHHHHHHHHHHhc--C--------HHH-HH----H--------HHHHHHHhhCCCCCchHHHHHHHHHH
Confidence            22221   1777888888776521  0        001 11    1        1133445555 788899998888888


Q ss_pred             HhhcC
Q 012448          433 GLVAR  437 (463)
Q Consensus       433 ~l~~~  437 (463)
                      .++.+
T Consensus       545 ~l~~~  549 (588)
T 1b3u_A          545 KIGPI  549 (588)
T ss_dssp             HHGGG
T ss_pred             HHHHH
Confidence            88864

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.10  E-value=1.2e-08  Score=110.03  Aligned_cols=356  Identities=12%  Similarity=0.072  Sum_probs=222.3

Q ss_pred             hHHHHHccccCCCCcchH-HHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448           41 LSVILNTLQTKPDVPGLE-DTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL  119 (463)
Q Consensus        41 l~~L~~~L~~~~~~~~~~-~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~  119 (463)
                      +..|-..|++.+  ...+ +.+.-++...+.   | .-...+...+...+.+++..+|+++.-.+..+++..   .. ..
T Consensus        15 ~~~i~~~L~~~~--~~~k~~~~~kli~~~~~---G-~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~---~e-~~   84 (591)
T 2vgl_B           15 IFELKAELNNEK--KEKRKEAVKKVIAAMTV---G-KDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ---PD-MA   84 (591)
T ss_dssp             HHHHHHHTTSSC--HHHHHHHHHHHHHHHHT---T-CCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS---HH-HH
T ss_pred             HHHHHHHHcCCC--HHHHHHHHHHHHHHHHC---C-CChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC---ch-HH
Confidence            445666676655  2222 222333333321   2 223345566777999999999999999999887754   33 33


Q ss_pred             HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhc
Q 012448          120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSV  199 (463)
Q Consensus       120 ~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~  199 (463)
                      .+     ++..+...+++++..+...|+.+|..+.  .+.+   . +.+.+  .+.+.+.+.++.||..+..++.++++.
T Consensus        85 ~l-----~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~---~-~~l~~--~l~~~L~d~~~~VRk~A~~al~~i~~~  151 (591)
T 2vgl_B           85 IM-----AVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKI---T-EYLCE--PLRKCLKDEDPYVRKTAAVCVAKLHDI  151 (591)
T ss_dssp             HT-----THHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGG---H-HHHHH--HHHHHSSCSCHHHHHHHHHHHHHHHHS
T ss_pred             HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHH---H-HHHHH--HHHHHcCCCChHHHHHHHHHHHHHHhh
Confidence            32     3446667899999999999998888775  2222   1 12233  566678899999999999999999999


Q ss_pred             CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhH
Q 012448          200 SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMI  278 (463)
Q Consensus       200 S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili  278 (463)
                      +++..+   +.++++.+...|.+ +|.-|+.+|+..|.+++. .+..+.+-...+.+.+|+..+.+  .||+.+...+-+
T Consensus       152 ~p~~~~---~~~~~~~l~~lL~d-~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~--~~~~~q~~il~~  225 (591)
T 2vgl_B          152 NAQMVE---DQGFLDSLRDLIAD-SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE--CTEWGQIFILDC  225 (591)
T ss_dssp             SCCCHH---HHHHHHHHHHTTSC-SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH--CCHHHHHHHHHH
T ss_pred             Chhhcc---cccHHHHHHHHhCC-CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC--CCchHHHHHHHH
Confidence            987654   45899999999999 999999999999999998 33221111122446666666653  678766444433


Q ss_pred             hhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC----CHHHHHHHhhcCchhHHHHHHHH
Q 012448          279 SGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS----SIQGATLLLLCLPPAARHVIDAA  354 (463)
Q Consensus       279 ~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs----s~eGk~~L~~~~~~~~~~~l~~~  354 (463)
                      .+.+.+.       +.   .....+++.+...+++.++.++-.|+++++.++.    +.++.+.+...    +...+-..
T Consensus       226 l~~l~~~-------~~---~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~----~~~~L~~L  291 (591)
T 2vgl_B          226 LSNYNPK-------DD---REAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKK----LAPPLVTL  291 (591)
T ss_dssp             HHTSCCC-------SH---HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHH----THHHHHHH
T ss_pred             HHHhCCC-------Ch---HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHH----HHHHHHHH
Confidence            4444431       11   1123456666677888999999999999999984    33444433221    11111111


Q ss_pred             Hhhccchh--hHhHHhhhHHHhcCCCchhh----hh---hhhhHHHHHHHHHHHHHhhCCCCChhH----HHHHHh-cCC
Q 012448          355 FDRQGHGK--QLAALHGLANIAGKTRSEDK----II---LNADAEESLRHLIYEVASRSSKLTPSG----LFLSVL-QQA  420 (463)
Q Consensus       355 ~~~~~~~~--k~r~L~al~~Il~~~r~~~~----~i---l~~~~e~~l~~~~ye~~~~~~~~~p~~----~~~~~~-qpF  420 (463)
                         ..+.+  |..++.+++.|.......-+    .+   .+++ . .+++..-+.++..-..+...    -+..+. ...
T Consensus       292 ---~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~-~-~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d  366 (591)
T 2vgl_B          292 ---LSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDP-I-YVKLEKLDIMIRLASQANIAQVLAELKEYATEVD  366 (591)
T ss_dssp             ---TTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSC-H-HHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSC
T ss_pred             ---hcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCCh-H-HHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCC
Confidence               12223  88889999888763211100    00   1222 2 24444436666533333233    344566 678


Q ss_pred             HHHHHHHHHHHHHhhc-----CchhHHHh
Q 012448          421 AEIRLAGYRMITGLVA-----RPWCLMEL  444 (463)
Q Consensus       421 ~elr~A~~~~l~~l~~-----~~Wg~~~i  444 (463)
                      +++|..+.+-+..++.     ..|++..+
T Consensus       367 ~~~r~~~v~aI~~la~~~~~~~~~~v~~L  395 (591)
T 2vgl_B          367 VDFVRKAVRAIGRCAIKVEQSAERCVSTL  395 (591)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence            9999999998888886     36765533

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.10  E-value=6.5e-09  Score=100.40  Aligned_cols=236  Identities=8%  Similarity=-0.031  Sum_probs=161.2

Q ss_pred             HHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 012448           30 AAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLE  109 (463)
Q Consensus        30 ~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~  109 (463)
                      ..+.+..+...++.|+..|++.+  +..+..++..|..+-        .+...+.|...|+++++.||..+++.++++-.
T Consensus        14 ~~l~~~~~~~~i~~L~~~L~~~~--~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~   83 (280)
T 1oyz_A           14 YGLYNQCKKLNDDELFRLLDDHN--SLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKI   83 (280)
T ss_dssp             HHHHHHHHTSCHHHHHHHTTCSS--HHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC
T ss_pred             hHHHHHHHHhhHHHHHHHHHcCC--HHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence            34455567778899999998755  777778888888772        24567788889999999999999999988643


Q ss_pred             CCchhHHHHHHHhhccCcHHHHH-HhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHH
Q 012448          110 DSDLEASCALQLLIDYEIYPLLL-DCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVR  188 (463)
Q Consensus       110 ~~~~~~~~~~~~~~~~~l~~~li-~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~R  188 (463)
                      ..   .. ..      .+++++. .++.|++..|...|+.+|..++...+    .+++..++  .|.+.+.+.+..+|..
T Consensus        84 ~~---~~-~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~--~L~~~l~d~~~~vR~~  147 (280)
T 1oyz_A           84 CK---KC-ED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVE--QSQITAFDKSTNVRRA  147 (280)
T ss_dssp             CT---TT-HH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHH--HHHHHTTCSCHHHHHH
T ss_pred             cc---cc-ch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHH--HHHHHhhCCCHHHHHH
Confidence            22   11 11      2445555 46788999999999999998874332    11223444  5665677888888888


Q ss_pred             HHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccc
Q 012448          189 VLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATE  268 (463)
Q Consensus       189 v~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~d  268 (463)
                      +...+.++..           .+.++.++..+++ +|.-||..++..|..+...        ....+..|...+.+  .|
T Consensus       148 a~~aL~~~~~-----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d--~~  205 (280)
T 1oyz_A          148 TAFAISVIND-----------KATIPLLINLLKD-PNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQD--KN  205 (280)
T ss_dssp             HHHHHHTC--------------CCHHHHHHHHTC-SSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTC--SC
T ss_pred             HHHHHHhcCC-----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcC--CC
Confidence            8888776653           2477888888888 8888999999988877531        12345666666654  56


Q ss_pred             hhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448          269 TILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS  331 (463)
Q Consensus       269 pl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs  331 (463)
                      |.+|..++...|.+..            ....|.++..+    ++  ++.+..|+++||.||.
T Consensus       206 ~~vR~~A~~aL~~~~~------------~~~~~~L~~~l----~d--~~vr~~a~~aL~~i~~  250 (280)
T 1oyz_A          206 EEVRIEAIIGLSYRKD------------KRVLSVLCDEL----KK--NTVYDDIIEAAGELGD  250 (280)
T ss_dssp             HHHHHHHHHHHHHTTC------------GGGHHHHHHHH----TS--SSCCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhCC------------HhhHHHHHHHh----cC--ccHHHHHHHHHHhcCc
Confidence            7778777776666653            12244444432    23  3478889999999987

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.10  E-value=9.9e-10  Score=122.69  Aligned_cols=309  Identities=13%  Similarity=0.051  Sum_probs=202.2

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-------chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCc
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-------SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSD  112 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-------~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~  112 (463)
                      -+|.|+.++++.+  +..++.+..+|.+++......       .....+.+.+..+++++++.||..++++++.++....
T Consensus       129 ll~~L~~~l~~~~--~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~  206 (852)
T 4fdd_A          129 LLPKLCSLLDSED--YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT  206 (852)
T ss_dssp             HHHHHHHHHSCSS--HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence            3677888888765  677888888998887654332       1134568888999999999999999999998876541


Q ss_pred             hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHH
Q 012448          113 LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLS  191 (463)
Q Consensus       113 ~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~e  191 (463)
                        .. ....+  .++++.++..++|++..|.+.|..+|..+++..+.. ...++ ++++  .+...+.+.++.+|..+++
T Consensus       207 --~~-~~~~~--~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~--~l~~~~~~~~~~vr~~a~e  278 (852)
T 4fdd_A          207 --QA-LMLHI--DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVE--YMLQRTQDQDENVALEACE  278 (852)
T ss_dssp             --HH-HHTSH--HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHH--HHHHHHTCSSHHHHHHHHH
T ss_pred             --HH-HHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHH--HHHHHccCCcHHHHHHHHH
Confidence              11 21111  257888889999999999999999999998876532 11111 2333  4444666788999999999


Q ss_pred             HHHHHHhcCH--HHHHHHHhhccHHHHHhhcC----------CC---C--------cHHHHHhHHHHHHHHHhhHHHHHH
Q 012448          192 LIVKLFSVSR--SVASVIFKANLLTLLEEGVS----------KK---N--------DTLETLSILELLYELAEIQHSAEF  248 (463)
Q Consensus       192 l~v~ia~~S~--~~~~~v~~sgl~~~ll~eL~----------~~---~--------DvLv~lnalell~eLa~t~~g~~~  248 (463)
                      .+..+++...  ..+.- .-..+++.++..+.          +.   +        +--+|..+.+.+..++....  +.
T Consensus       279 ~l~~l~~~~~~~~~~~~-~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~  355 (852)
T 4fdd_A          279 FWLTLAEQPICKDVLVR-HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DE  355 (852)
T ss_dssp             HHHHHTTSTTHHHHHTT-THHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GG
T ss_pred             HHHHHhcchhHHHHHHH-HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence            9999987541  11111 11256677766652          10   1        11368899999999998432  22


Q ss_pred             HHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHh
Q 012448          249 LSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQ  328 (463)
Q Consensus       249 L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~  328 (463)
                      +. ..++..+.+.+.+  .++-+|..++++.|-+...  .-..+    ....+.++..++..+.++++.++.+|+|++|.
T Consensus       356 ~~-~~l~~~l~~~l~~--~~~~~R~aa~~alg~i~~~--~~~~~----~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~  426 (852)
T 4fdd_A          356 LL-PHILPLLKELLFH--HEWVVKESGILVLGAIAEG--CMQGM----IPYLPELIPHLIQCLSDKKALVRSITCWTLSR  426 (852)
T ss_dssp             GH-HHHHHHHHHHHTC--SSHHHHHHHHHHHHHTTTT--THHHH----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhc--chHHH----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            22 2456666666654  4788888888888888762  21111    12345566666677888999999999999999


Q ss_pred             hcCCHHHHHHHhhcCchhHHHHHHHHHhhccc-hh--hHhHHhhhHHHhc
Q 012448          329 IGSSIQGATLLLLCLPPAARHVIDAAFDRQGH-GK--QLAALHGLANIAG  375 (463)
Q Consensus       329 Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~-~~--k~r~L~al~~Il~  375 (463)
                      ++....+. ..    ...+..++..+.....+ .+  |..+..+++++..
T Consensus       427 l~~~~~~~-~~----~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          427 YAHWVVSQ-PP----DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             THHHHHHS-CT----TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccc-hH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            99643221 01    22344444444444432 12  6666777766654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.04  E-value=3.1e-08  Score=109.58  Aligned_cols=309  Identities=15%  Similarity=0.100  Sum_probs=200.7

Q ss_pred             HHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCC--CHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 012448           44 ILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTAD--SHSVKRLACKTVTCLLEDSDLEASCALQL  121 (463)
Q Consensus        44 L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~--~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~  121 (463)
                      |+.+|.+.+  +.. ..++.++..+.....+..-.+.+.+.+...+.++  ++.+|+.++..++++.+...  .. ..+.
T Consensus        95 ll~~l~~~~--~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~-~~~~  168 (876)
T 1qgr_A           95 VLHTLGTET--YRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PE-QLQD  168 (876)
T ss_dssp             HHHHTTTCC--SSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HH-HHGG
T ss_pred             HHHHhCCCc--HHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--Hh-hHHh
Confidence            888887654  556 8888899888766555455677899999999999  99999999999999987531  11 2111


Q ss_pred             hhccCcHHHHHHhhcCC--chHHHHHHHHHHHHHhCCCC-Ccc-ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448          122 LIDYEIYPLLLDCLING--NEEVATASMDAIKKLAGFPN-GID-IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF  197 (463)
Q Consensus       122 ~~~~~l~~~li~~l~d~--d~~va~~A~~~L~~lak~~~-~l~-~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia  197 (463)
                      . -+.+++.+..++.++  +..+...|+++|..+...-. .++ ..+....++  .+.+.+...++.+|..+++++..++
T Consensus       169 ~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~--~l~~~~~~~~~~vr~~a~~~l~~l~  245 (876)
T 1qgr_A          169 K-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ--VVCEATQCPDTRVRVAALQNLVKIM  245 (876)
T ss_dssp             G-HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH--HHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            1 135788888999998  58899999999999875421 110 000001232  3444455678889999999999999


Q ss_pred             hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHH-------------------HHHHh--cchHH
Q 012448          198 SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSA-------------------EFLSR--TTLLQ  256 (463)
Q Consensus       198 ~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~-------------------~~L~~--~gi~~  256 (463)
                      +..++.+.......+++.++..+.+ +|.-++..+++.+..+++.....                   .|+..  ..++.
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  324 (876)
T 1qgr_A          246 SLYYQYMETYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP  324 (876)
T ss_dssp             HHSGGGCHHHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhH
Confidence            9888776655555899999999988 88999999999999999853211                   11110  23455


Q ss_pred             HHHHHhcccc-----cchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448          257 LLCSLIGNSA-----TETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS  331 (463)
Q Consensus       257 ~L~~~i~~~~-----~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs  331 (463)
                      .+...+....     +++-+|.-+..+.+.+...     +.+    ...|.++..+.+.+.+++...+.+|++++|.|+.
T Consensus       325 ~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~-----~~~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~  395 (876)
T 1qgr_A          325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC-----CED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE  395 (876)
T ss_dssp             HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH-----HGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred             HHHHHhhcccccccccccHHHHHHHHHHHHHHHH-----CcH----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHc
Confidence            5556654322     2233443333333433321     011    1133444444445677889999999999999997


Q ss_pred             CHHHHHHHhhcCchhHHHHHHHHHhhccch-h--hHhHHhhhHHHhcC
Q 012448          332 SIQGATLLLLCLPPAARHVIDAAFDRQGHG-K--QLAALHGLANIAGK  376 (463)
Q Consensus       332 s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~-~--k~r~L~al~~Il~~  376 (463)
                      ..... .+..    .+..++..+.....+. +  |.+|..+++.+...
T Consensus       396 ~~~~~-~~~~----~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T 1qgr_A          396 GPEPS-QLKP----LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             SSCHH-HHHH----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCHH-HHHH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            43211 1111    2233444444444432 2  77888999888874

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.97  E-value=3.6e-08  Score=107.07  Aligned_cols=288  Identities=11%  Similarity=0.074  Sum_probs=181.5

Q ss_pred             hHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 012448           41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQ  120 (463)
Q Consensus        41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~  120 (463)
                      .+.|..-|++.|  +..+..+..+|..+    ...++.+.+.+.+..+|.|++|.||.-|+.+++++.+..   .. ..+
T Consensus       109 in~l~kDL~~~n--~~vr~lAL~~L~~i----~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~---p~-~v~  178 (618)
T 1w63_A          109 TNCIKNDLNHST--QFVQGLALCTLGCM----GSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV---PE-LME  178 (618)
T ss_dssp             HHHHHHHHSCSS--SHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC---GG-GGG
T ss_pred             HHHHHHhcCCCC--HhHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC---hH-HHH
Confidence            345556666655  66666666677777    345677888999999999999999999999999998865   33 322


Q ss_pred             HhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh---------------cCCchh
Q 012448          121 LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA---------------QCSSLG  185 (463)
Q Consensus       121 ~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~---------------~~~~~v  185 (463)
                           ++++.+..+|.|+|..|...|+.+|..++.+.++....|. ..++  .|-+.+.               ..++-.
T Consensus       179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~-~~v~--~l~~~L~~~~~~~~~~~~~~~~~~~~~~  250 (618)
T 1w63_A          179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR-KLVP--QLVRILKNLIMSGYSPEHDVSGISDPFL  250 (618)
T ss_dssp             -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH-TTHH--HHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred             -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH-HHHH--HHHHHHHHHHcCCCCccccccCCCCChH
Confidence                 5677777899999999999999999999887653211111 2223  2332222               258999


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhc---CCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHh
Q 012448          186 RVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGV---SKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLI  262 (463)
Q Consensus       186 R~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL---~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i  262 (463)
                      +..+.+++..++...++..+.+.  .++..++...   ++ .+.-|...|+..+..+...+..    . ...+..|...+
T Consensus       251 q~~il~~L~~l~~~~~~~~~~~~--~~L~~l~~~~~~~~~-~~~aV~~ea~~~i~~l~~~~~l----~-~~a~~~L~~~L  322 (618)
T 1w63_A          251 QVRILRLLRILGRNDDDSSEAMN--DILAQVATNTETSKN-VGNAILYETVLTIMDIKSESGL----R-VLAINILGRFL  322 (618)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHTTH--HHHHHHHHTSCCSST-HHHHHHHHHHHHHHHSCCCHHH----H-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHH--HHHHHHHhccccccc-hHHHHHHHHHHHHHhcCCCHHH----H-HHHHHHHHHHH
Confidence            99999999999998887654433  3555555432   33 4556777777777766443221    1 14556666666


Q ss_pred             cccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhc
Q 012448          263 GNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLC  342 (463)
Q Consensus       263 ~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~  342 (463)
                      .+  .||-+|--++...+.+...     .+ ..+..    ....+|.++.++|.+++..|+++++.++....-...+   
T Consensus       323 ~~--~d~~vr~~aL~~L~~i~~~-----~p-~~~~~----~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv---  387 (618)
T 1w63_A          323 LN--NDKNIRYVALTSLLKTVQT-----DH-NAVQR----HRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMM---  387 (618)
T ss_dssp             TC--SSTTTHHHHHHHHHHHHHH-----HH-HHHGG----GHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHH---
T ss_pred             hC--CCCchHHHHHHHHHHHHhh-----CH-HHHHH----HHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHH---
Confidence            54  5666664454444444431     00 00112    1234556778899999999999999999843211111   


Q ss_pred             CchhHHHHHHHHHhhccchhhHhHHhhhHHHhc
Q 012448          343 LPPAARHVIDAAFDRQGHGKQLAALHGLANIAG  375 (463)
Q Consensus       343 ~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~  375 (463)
                           +.+++ +.......-|..++.+++.+..
T Consensus       388 -----~eL~~-~l~~~d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          388 -----KELLY-FLDSCEPEFKADCASGIFLAAE  414 (618)
T ss_dssp             -----HHHHH-HHHHCCHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHH-HHHhCCHHHHHHHHHHHHHHHH
Confidence                 11211 1111111227777777777765

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.96  E-value=7e-08  Score=106.50  Aligned_cols=312  Identities=12%  Similarity=0.067  Sum_probs=196.1

Q ss_pred             hHHHHHccccC-CCCcchHHHHHHHHHHHhcccccc-----chhhchHHHHHHhhcCC--CHHHHHHHHHHHHHHHhCCc
Q 012448           41 LSVILNTLQTK-PDVPGLEDTLVVCLERIFKTKYGA-----SLIPHYMPFVQVGLTAD--SHSVKRLACKTVTCLLEDSD  112 (463)
Q Consensus        41 l~~L~~~L~~~-~~~~~~~~~~~~vL~~il~~~~~~-----~l~~~~~~~l~~gL~h~--~~~Vr~Lal~~l~~i~~~~~  112 (463)
                      +|.|+.++++. +  +..++.+..+|..+.....+.     ...+.+.+.+..++.++  ++.||..+++.++.++....
T Consensus       136 l~~L~~~l~~~~~--~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~  213 (861)
T 2bpt_A          136 MKIMVDNTGAEQP--ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK  213 (861)
T ss_dssp             HHHHHHHTSTTSC--HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHhcCCC--HHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            46677777765 4  677888888898887654432     24455678889999998  89999999999999875441


Q ss_pred             hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC-ccccccCCCcchhhHhhHhhcCCchhHHHHHH
Q 012448          113 LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG-IDIIFPADNKAATDLGNLVAQCSSLGRVRVLS  191 (463)
Q Consensus       113 ~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~-l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~e  191 (463)
                      .  . .........+++.+...+.+++..+.+.|..+|..+++..+. +...+...+++  .+...+...++.+|..+++
T Consensus       214 ~--~-~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~vr~~a~~  288 (861)
T 2bpt_A          214 N--N-MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYA--LTIATMKSPNDKVASMTVE  288 (861)
T ss_dssp             H--H-HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHH--HHHHHTTCSSHHHHHHHHH
T ss_pred             H--H-ccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCcHHHHHHHHH
Confidence            1  0 110001123677777888999999999999999999865431 11111112332  3333555778899999999


Q ss_pred             HHHHHHhcCHHH-----------------HHHHHhhccHHHHHhhcCCC------CcHHHHHhHHHHHHHHHhhHHHHHH
Q 012448          192 LIVKLFSVSRSV-----------------ASVIFKANLLTLLEEGVSKK------NDTLETLSILELLYELAEIQHSAEF  248 (463)
Q Consensus       192 l~v~ia~~S~~~-----------------~~~v~~sgl~~~ll~eL~~~------~DvLv~lnalell~eLa~t~~g~~~  248 (463)
                      ++..+++...+.                 +.... ..+++.++..+.+.      ++.-+|..+.++|..++..-.  +.
T Consensus       289 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~  365 (861)
T 2bpt_A          289 FWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NH  365 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GG
T ss_pred             HHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--Hh
Confidence            999998774321                 11111 46788888877641      335789999999999998421  11


Q ss_pred             HHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccc-hhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHH
Q 012448          249 LSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSH-MFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALG  327 (463)
Q Consensus       249 L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG  327 (463)
                      +. ..++..+.+.+.+  .++-.|.-++.+.|-+..  +.- ..    ....++.++..+++.+.++++.++.+|+|++|
T Consensus       366 ~~-~~l~~~l~~~l~~--~~~~~r~~a~~~l~~i~~--~~~~~~----~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~  436 (861)
T 2bpt_A          366 IL-EPVLEFVEQNITA--DNWRNREAAVMAFGSIMD--GPDKVQ----RTYYVHQALPSILNLMNDQSLQVKETTAWCIG  436 (861)
T ss_dssp             GH-HHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSS--SSCHHH----HHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHcCC--CChhHHHHHHHHHHHHHc--CCCHHH----HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            11 1334444444443  456667667777777664  211 11    12234556666666777889999999999999


Q ss_pred             hhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchh--hHhHHhhhHHHhc
Q 012448          328 QIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGK--QLAALHGLANIAG  375 (463)
Q Consensus       328 ~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~--k~r~L~al~~Il~  375 (463)
                      .++...... ..   ....+..++..+.....+.+  +..+..++..+..
T Consensus       437 ~l~~~~~~~-~~---~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~  482 (861)
T 2bpt_A          437 RIADSVAES-ID---PQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVE  482 (861)
T ss_dssp             HHHHHHGGG-SC---TTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhh-cC---CHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            998643210 00   02234455555444444334  5566677776665

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.96  E-value=2.6e-08  Score=101.58  Aligned_cols=278  Identities=13%  Similarity=0.095  Sum_probs=182.0

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhccccc---cchhhchHHHHHHhhcCC--CHHHHHHHHHHHHHHHhCCchh
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG---ASLIPHYMPFVQVGLTAD--SHSVKRLACKTVTCLLEDSDLE  114 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~---~~l~~~~~~~l~~gL~h~--~~~Vr~Lal~~l~~i~~~~~~~  114 (463)
                      -+|.|+.++++..+++..++.+..+|..+.....+   ....+.+.+.+..+|.++  ++.||..+++.++.++..... 
T Consensus       129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~-  207 (462)
T 1ibr_B          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA-  207 (462)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH-
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence            35778888887510267788888899988765433   233455788899999999  899999999999998754311 


Q ss_pred             HHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC-ccccccCCCcchhhHhhHhhcCCchhHHHHHHHH
Q 012448          115 ASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG-IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLI  193 (463)
Q Consensus       115 ~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~-l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~  193 (463)
                       . ........-+++.+...+.+++..+.+.+..+|..++...+. +...+...+++  .+...+...++.+|..+++.+
T Consensus       208 -~-~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~v~~~a~~~l  283 (462)
T 1ibr_B          208 -N-FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA--ITIEAMKSDIDEVALQGIEFW  283 (462)
T ss_dssp             -H-HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHH--HHHHHHHCSSHHHHHHHHHHH
T ss_pred             -h-hhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCchHHHHHHHHHH
Confidence             0 100001112566677788999999999999999999866542 22222224444  333355678999999999999


Q ss_pred             HHHHhcCHHHHH------------------HH--HhhccHHHHHhhcCCC------CcHHHHHhHHHHHHHHHhhHHHHH
Q 012448          194 VKLFSVSRSVAS------------------VI--FKANLLTLLEEGVSKK------NDTLETLSILELLYELAEIQHSAE  247 (463)
Q Consensus       194 v~ia~~S~~~~~------------------~v--~~sgl~~~ll~eL~~~------~DvLv~lnalell~eLa~t~~g~~  247 (463)
                      ..++....+...                  .+  .-..+++.++..+.+.      +|--+|..+..+|..++..-. -.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~  362 (462)
T 1ibr_B          284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DD  362 (462)
T ss_dssp             HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TT
T ss_pred             HHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HH
Confidence            998876422110                  11  0135677777766431      344689999999999998422 12


Q ss_pred             HHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccc-hhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHH
Q 012448          248 FLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSH-MFIDESSAKTVISAIDGRLGFLQSQDSDECESALEAL  326 (463)
Q Consensus       248 ~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtl  326 (463)
                      .+  ..++..+...+.+  .++-+|.-++++.|-+..  +.- ..+    ....+.++..++..+.++++.++..|+|+|
T Consensus       363 ~~--~~~~~~l~~~l~~--~~~~~r~aal~~l~~l~~--~~~~~~~----~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l  432 (462)
T 1ibr_B          363 IV--PHVLPFIKEHIKN--PDWRYRDAAVMAFGCILE--GPEPSQL----KPLVIQAMPTLIELMKDPSVVVRDTAAWTV  432 (462)
T ss_dssp             HH--HHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSS--SSCTTTT----CTTTTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhcC--CChHHHHHHHHHHHHHhc--CCcHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            22  2455666666653  567778778888887775  211 111    111233444455567788899999999999


Q ss_pred             HhhcCCH
Q 012448          327 GQIGSSI  333 (463)
Q Consensus       327 G~Igss~  333 (463)
                      |.++...
T Consensus       433 ~~~~~~~  439 (462)
T 1ibr_B          433 GRICELL  439 (462)
T ss_dssp             HHHHHHG
T ss_pred             HHHHHhc
Confidence            9998633

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.93  E-value=3.9e-08  Score=90.84  Aligned_cols=192  Identities=14%  Similarity=0.083  Sum_probs=143.7

Q ss_pred             hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC
Q 012448           78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP  157 (463)
Q Consensus        78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~  157 (463)
                      .+...+.|...|+++++.||..+++.++++-.               ++.++.++..+.|++..|...|+.+|..+..  
T Consensus        17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~---------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--   79 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD---------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--   79 (211)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--
T ss_pred             CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--
Confidence            35668889999999999999999999998521               2467888899999999999999999999863  


Q ss_pred             CCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHH
Q 012448          158 NGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLY  237 (463)
Q Consensus       158 ~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~  237 (463)
                              +..++  .|.+.+.+.+..+|..+...+.++..           .+.++.++..+++ +|.-||..+++.|.
T Consensus        80 --------~~~~~--~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~  137 (211)
T 3ltm_A           80 --------ERAVE--PLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKD-EDWFVRIAAAFALG  137 (211)
T ss_dssp             --------GGGHH--HHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC-SSHHHHHHHHHHHH
T ss_pred             --------HHHHH--HHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhC-CCHHHHHHHHHHHH
Confidence                    23455  66667888999999999999888753           3577888888999 99999999999999


Q ss_pred             HHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChh
Q 012448          238 ELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSD  317 (463)
Q Consensus       238 eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~  317 (463)
                      .+..          ...+..|...+.+  .||.+|..++...|.+..            ....|.+.    ++++++++.
T Consensus       138 ~~~~----------~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~------------~~~~~~L~----~~l~d~~~~  189 (211)
T 3ltm_A          138 EIGD----------ERAVEPLIKALKD--EDGWVRQSAADALGEIGG------------ERVRAAME----KLAETGTGF  189 (211)
T ss_dssp             HHCC----------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCS------------HHHHHHHH----HHHHHCCHH
T ss_pred             HcCC----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCc------------hhHHHHHH----HHHhCCCHH
Confidence            8854          3467778887753  678888667666666543            11122322    245678899


Q ss_pred             hhhHHHHHHHhhcCCHHHH
Q 012448          318 ECESALEALGQIGSSIQGA  336 (463)
Q Consensus       318 ~~~~A~dtlG~Igss~eGk  336 (463)
                      ++..|.++|+.++.+..+.
T Consensus       190 vr~~A~~aL~~~~~~~~~~  208 (211)
T 3ltm_A          190 ARKVAVNYLETHKSFNHHH  208 (211)
T ss_dssp             HHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHhcCCCCCCC
Confidence            9999999999999876654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.92  E-value=4e-08  Score=90.05  Aligned_cols=193  Identities=13%  Similarity=0.083  Sum_probs=149.7

Q ss_pred             cccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHH
Q 012448           73 YGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKK  152 (463)
Q Consensus        73 ~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~  152 (463)
                      ++....+...+.+...|+++++.||..+++.++++-.               .+.++.++..+.+++..+...|+.+|..
T Consensus         7 ~~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~---------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~   71 (201)
T 3ltj_A            7 HHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD---------------ERAVEPLIKALKDEDAWVRRAAADALGQ   71 (201)
T ss_dssp             CCCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             cccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC---------------hhHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence            4455666778999999999999999999999998521               1457888899999999999999999998


Q ss_pred             HhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhH
Q 012448          153 LAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSI  232 (463)
Q Consensus       153 lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lna  232 (463)
                      ++.          +..++  .|.+.+.+.+..+|..+...+.++..           ...++.++..+++ +|.-||..+
T Consensus        72 ~~~----------~~~~~--~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d-~~~~vr~~a  127 (201)
T 3ltj_A           72 IGD----------ERAVE--PLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKD-EDWFVRIAA  127 (201)
T ss_dssp             HCC----------GGGHH--HHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC-SSHHHHHHH
T ss_pred             hCC----------HHHHH--HHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcC-CCHHHHHHH
Confidence            853          23455  66667888899999999999888753           2577888888999 999999999


Q ss_pred             HHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhcccc
Q 012448          233 LELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQ  312 (463)
Q Consensus       233 lell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~  312 (463)
                      ++.|..+..          ...+..|...+.+  .||.+|..++...|.+..            ....|.+.+    .++
T Consensus       128 ~~aL~~~~~----------~~~~~~L~~~l~d--~~~~vr~~A~~aL~~~~~------------~~~~~~L~~----~l~  179 (201)
T 3ltj_A          128 AFALGEIGD----------ERAVEPLIKALKD--EDGWVRQSAADALGEIGG------------ERVRAAMEK----LAE  179 (201)
T ss_dssp             HHHHHHHTC----------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCS------------HHHHHHHHH----HHH
T ss_pred             HHHHHHhCC----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCc------------hhHHHHHHH----HHh
Confidence            999988854          4567788888865  578888777777776643            112333333    346


Q ss_pred             CCChhhhhHHHHHHHhhcCC
Q 012448          313 SQDSDECESALEALGQIGSS  332 (463)
Q Consensus       313 ~~d~~~~~~A~dtlG~Igss  332 (463)
                      ++|+.++..|.++|+.|.+.
T Consensus       180 d~~~~vr~~A~~aL~~l~~~  199 (201)
T 3ltj_A          180 TGTGFARKVAVNYLETHKSL  199 (201)
T ss_dssp             HCCHHHHHHHHHHHHHCC--
T ss_pred             CCCHHHHHHHHHHHHHHHhh
Confidence            78899999999999998763

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=98.92  E-value=3.4e-07  Score=101.15  Aligned_cols=382  Identities=11%  Similarity=0.113  Sum_probs=250.6

Q ss_pred             HHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 012448           30 AAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLL  108 (463)
Q Consensus        30 ~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~  108 (463)
                      +..|+++...=.+-|-..+++    +..+..+..+|-|+-....+. .-..+..+.+.+.|.+++...|+.++..+.++.
T Consensus       287 ~~cR~~I~~~~~~~L~~~l~~----~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLS  362 (778)
T 3opb_A          287 ETMRTYITENYLQLLERSLNV----EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLS  362 (778)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTS----GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHhHHHHHHHHhcc----HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            555888877667777777753    466777777998885433222 234457888999999998888999999999997


Q ss_pred             hCCchhHHHHHHHhhccCcHHHHHHhhcC-CchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcC------
Q 012448          109 EDSDLEASCALQLLIDYEIYPLLLDCLIN-GNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQC------  181 (463)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~li~~l~d-~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~------  181 (463)
                      -+.   .. --++..|.+++..++..+.. ++.++...+..+|.++.+..+.+... . ....  +|++.+...      
T Consensus       363 l~~---~V-Ke~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e-~-~~l~--~Lk~~A~~~~p~~~~  434 (778)
T 3opb_A          363 LKA---SV-KIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX-X-XXXX--XXXXXXXXXXPAADK  434 (778)
T ss_dssp             TSS---HH-HHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC-C-C--------------------
T ss_pred             CCH---HH-HHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchh-h-hhhh--hhhhhccccCcccCc
Confidence            766   44 45677888899999999995 88999999999999999987643211 1 1222  555333221      


Q ss_pred             CchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHH
Q 012448          182 SSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSL  261 (463)
Q Consensus       182 ~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~  261 (463)
                      ++...       -.-.....-.-..+.+.|.++.++..+++ ++.-+|-.++.+|..|+..+.+...++++|++..|+.+
T Consensus       435 ~d~~~-------~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S-~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~l  506 (778)
T 3opb_A          435 VGAEK-------AAKEDILLFNEKYILRTELISFLKREMHN-LSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEY  506 (778)
T ss_dssp             CCTHH-------HHHHHHHHHHHHHTTTTTHHHHHHHHGGG-SCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHH
T ss_pred             ccccc-------cchHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence            11100       11111111133677899999999999998 89999999999999999999999999999999999999


Q ss_pred             hcccccc-hhhhhhhhhHhhhhccccc-cchhcchhhhhhhHHHHHHHhccccCCCh-------------hhhhHHHHHH
Q 012448          262 IGNSATE-TILRSRAIMISGRLLSKDD-SHMFIDESSAKTVISAIDGRLGFLQSQDS-------------DECESALEAL  326 (463)
Q Consensus       262 i~~~~~d-pl~r~~aili~g~i~~f~~-~~~~~~~~~~k~~p~~l~~~f~~~~~~d~-------------~~~~~A~dtl  326 (463)
                      +.+.... .-.|..|.-+...+.-..+ ...|..+....+.|++++ ++..  +++.             -.+--|+-+|
T Consensus       507 L~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~-LL~~--~~~~~~~~l~~~~~~~~l~~feAL~AL  583 (778)
T 3opb_A          507 LANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFE-LLPR--STPVDDNPLHNDEQIKLTDNYEALLAL  583 (778)
T ss_dssp             TTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHH-TSCC--SSSCSSCC---CCCCCHHHHHHHHHHH
T ss_pred             HhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHH-HcCC--CCCcccccccccccccHHHHHHHHHHH
Confidence            9875422 1135566666666653222 122321112245677666 3221  1111             1255799999


Q ss_pred             HhhcCCH-----HHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHH
Q 012448          327 GQIGSSI-----QGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVA  401 (463)
Q Consensus       327 G~Igss~-----eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~  401 (463)
                      +++++.+     +.++.+.+. ...+..+...++.. ....|..|..++.++...+  +.           +.    ..+
T Consensus       584 TNLAs~~~n~~E~~r~~Ii~~-~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~~--e~-----------i~----~k~  644 (778)
T 3opb_A          584 TNLASSETSDGEEVCKHIVST-KVYWSTIENLMLDE-NVPLQRSTLELISNMMSHP--LT-----------IA----AKF  644 (778)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHS-HHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTSG--GG-----------TG----GGT
T ss_pred             HHHhcCCcccchHHHHHHHHh-cCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCCc--HH-----------HH----HHH
Confidence            9999965     334545542 23555555444431 2233889999999999743  20           10    011


Q ss_pred             hhCCCCCh-----hHHHHHHh-cCCHHHHHHHHHHHHHhh-cCchhHHHhhhccchhHhhc
Q 012448          402 SRSSKLTP-----SGLFLSVL-QQAAEIRLAGYRMITGLV-ARPWCLMELCSKQEIINTVT  455 (463)
Q Consensus       402 ~~~~~~~p-----~~~~~~~~-qpF~elr~A~~~~l~~l~-~~~Wg~~~i~~~~gfie~ll  455 (463)
                      ++.  .+|     +..+..++ -..+++|.||-..|.-+. ..+-..+.+...+++++.++
T Consensus       645 ~~~--~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll  703 (778)
T 3opb_A          645 FNL--ENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAI  703 (778)
T ss_dssp             SCC--SSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHH
T ss_pred             Hhh--cCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHH
Confidence            211  123     45677788 779999999999999985 68888888998888877765

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.91  E-value=9.8e-08  Score=105.31  Aligned_cols=313  Identities=12%  Similarity=0.061  Sum_probs=199.4

Q ss_pred             HHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCC-CHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 012448           42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTAD-SHSVKRLACKTVTCLLEDSDLEASCALQ  120 (463)
Q Consensus        42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~~~~~~~~~~  120 (463)
                      +.|+.+|.+.+  +..+.+++.+|..+.....|..--+.+.+.|...+.++ ++.+|+.++..++++.+.-..... ...
T Consensus        98 ~~ll~~l~~~~--~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~  174 (861)
T 2bpt_A           98 TNALTALVSIE--PRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ-ALV  174 (861)
T ss_dssp             HHHHHHHTCSS--HHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS-TTG
T ss_pred             HHHHHHHCCCc--hHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh-HHH
Confidence            45677777654  77889999999998665545334567899999999999 999999999999999875421100 000


Q ss_pred             HhhccCcHHHHHHhhcCC--chHHHHHHHHHHHHHhCCCC-Ccc-ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448          121 LLIDYEIYPLLLDCLING--NEEVATASMDAIKKLAGFPN-GID-IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL  196 (463)
Q Consensus       121 ~~~~~~l~~~li~~l~d~--d~~va~~A~~~L~~lak~~~-~l~-~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i  196 (463)
                      -. -..+++.+..++.++  +..|...|+++|..+...-. .+. ....+..++  .|.+.+...+..+|.-+++++..+
T Consensus       175 ~~-~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~--~l~~~~~~~~~~~r~~a~~~l~~l  251 (861)
T 2bpt_A          175 SS-SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ--VVCEATQAEDIEVQAAAFGCLCKI  251 (861)
T ss_dssp             GG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH--HHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHH--HHHHHhcCCCHHHHHHHHHHHHHH
Confidence            01 124778888899998  78999999999988753321 000 000011233  444455667889999999999999


Q ss_pred             HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHH---------------HHHh--cchHHHHH
Q 012448          197 FSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAE---------------FLSR--TTLLQLLC  259 (463)
Q Consensus       197 a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~---------------~L~~--~gi~~~L~  259 (463)
                      +...++.+.......+++.++..+.+ .|.-++..+++.+..+++......               ++..  ..++..++
T Consensus       252 ~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll  330 (861)
T 2bpt_A          252 MSKYYTFMKPYMEQALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLL  330 (861)
T ss_dssp             HHHHGGGCHHHHHHTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence            98766655443433788888889999 899999999999999998532110               1111  45677777


Q ss_pred             HHhccccc-----chhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHH
Q 012448          260 SLIGNSAT-----ETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQ  334 (463)
Q Consensus       260 ~~i~~~~~-----dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~e  334 (463)
                      ..+.+..+     ++-+|.-+.-..+.+..     .+.    ....|.++..+.+.+.+++...+.+|++++|.|+....
T Consensus       331 ~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~-----~~~----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~  401 (861)
T 2bpt_A          331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQ-----NCG----NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD  401 (861)
T ss_dssp             HHTTCCCCC-CCCCCHHHHHHHHHHHHHHH-----HHG----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred             HHHHhcccccccccCcHHHHHHHHHHHHHH-----Hcc----HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC
Confidence            77765432     23333223323333222     011    11234455544456677889999999999999997432


Q ss_pred             HHHHHhhcCchhHHHHHHHHHhhccch-h--hHhHHhhhHHHhc
Q 012448          335 GATLLLLCLPPAARHVIDAAFDRQGHG-K--QLAALHGLANIAG  375 (463)
Q Consensus       335 Gk~~L~~~~~~~~~~~l~~~~~~~~~~-~--k~r~L~al~~Il~  375 (463)
                      . ..+.    +.+..++..+.....+. +  |.+++.+++.+..
T Consensus       402 ~-~~~~----~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~  440 (861)
T 2bpt_A          402 K-VQRT----YYVHQALPSILNLMNDQSLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             H-HHHH----HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             H-HHHH----HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            1 1221    12344555555444432 2  5566667766654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.90  E-value=1e-07  Score=91.97  Aligned_cols=225  Identities=14%  Similarity=0.041  Sum_probs=162.1

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHH-HhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQ-VGLTADSHSVKRLACKTVTCLLEDSDLEASCA  118 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~-~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~  118 (463)
                      .++.|..+|++.+  +..+..++.+|..+-.   +....+.+.+.+. .+++++++.||..++++++++..+.   .. .
T Consensus        55 ~~~~L~~~l~d~~--~~vR~~A~~aL~~l~~---~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~---~~-~  125 (280)
T 1oyz_A           55 AVRLAIEFCSDKN--YIRRDIGAFILGQIKI---CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN---PI-Y  125 (280)
T ss_dssp             HHHHHHHHHTCSS--HHHHHHHHHHHHHSCC---CTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC---GG-G
T ss_pred             HHHHHHHHHcCCC--HHHHHHHHHHHHHhcc---ccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC---Cc-c
Confidence            3677888888765  7788888889988721   1222334555665 5789999999999999999986433   11 0


Q ss_pred             HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448          119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS  198 (463)
Q Consensus       119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~  198 (463)
                           .+.+++.++.++.|++..|...|+.+|..++.          +..++  .|.+.+.+.+..||..+...+.++..
T Consensus       126 -----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~--~L~~~l~d~~~~vr~~a~~aL~~~~~  188 (280)
T 1oyz_A          126 -----SPKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIP--LLINLLKDPNGDVRNWAAFAININKY  188 (280)
T ss_dssp             -----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHH--HHHHHHTCSSHHHHHHHHHHHHHHTC
T ss_pred             -----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHH--HHHHHHcCCCHHHHHHHHHHHHhhcc
Confidence                 12467888899999999999999999987753          23555  67768888999999999999988865


Q ss_pred             cCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhH
Q 012448          199 VSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMI  278 (463)
Q Consensus       199 ~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili  278 (463)
                      .++         ..++.++..+++ +|.-||..++..|..+.          ....+..|...+.+    |-+|..++..
T Consensus       189 ~~~---------~~~~~L~~~l~d-~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d----~~vr~~a~~a  244 (280)
T 1oyz_A          189 DNS---------DIRDCFVEMLQD-KNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKK----NTVYDDIIEA  244 (280)
T ss_dssp             CCH---------HHHHHHHHHTTC-SCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTS----SSCCHHHHHH
T ss_pred             CcH---------HHHHHHHHHhcC-CCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcC----ccHHHHHHHH
Confidence            454         356677788889 99999999999998876          34677888888765    2267666666


Q ss_pred             hhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhh
Q 012448          279 SGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQI  329 (463)
Q Consensus       279 ~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~I  329 (463)
                      .|.+..            ....|.+.+ ++  -+.+|+.....+++.+..|
T Consensus       245 L~~i~~------------~~~~~~L~~-~l--~~~~~~~~~~~~~~~l~~~  280 (280)
T 1oyz_A          245 AGELGD------------KTLLPVLDT-ML--YKFDDNEIITSAIDKLKRS  280 (280)
T ss_dssp             HHHHCC------------GGGHHHHHH-HH--TTSSCCHHHHHHHHHHTCC
T ss_pred             HHhcCc------------hhhhHHHHH-HH--hcCCCcHHHHHHHHHhhcC
Confidence            666543            022444343 32  2457788888899888754

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.90  E-value=1.1e-07  Score=103.35  Aligned_cols=288  Identities=14%  Similarity=0.058  Sum_probs=179.4

Q ss_pred             HHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 012448           42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQL  121 (463)
Q Consensus        42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~  121 (463)
                      +.++.++++++  -..++.+-..+..+++.  ..++..-....++..|+|+++.||.+|+++++++..     .. .++ 
T Consensus        73 ~~vik~~~s~~--~~~Krl~Yl~~~~~~~~--~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-----~~-~~~-  141 (618)
T 1w63_A           73 LECLKLIASQK--FTDKRIGYLGAMLLLDE--RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS-----SE-MCR-  141 (618)
T ss_dssp             HHHHHHHHSSS--HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-----HH-HHH-
T ss_pred             HHHHHHHcCCc--hHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-----HH-HHH-
Confidence            34555555443  22333333355555332  234444468889999999999999999999999842     22 332 


Q ss_pred             hhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCH
Q 012448          122 LIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSR  201 (463)
Q Consensus       122 ~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~  201 (463)
                          .+++.|..++.+++..|.+.|+.++.++.+..|.+   +. +.++  .+.+.+...|..|+.-+..++.+|+.+++
T Consensus       142 ----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~---v~-~~~~--~l~~lL~D~d~~V~~~Al~~L~~i~~~~~  211 (618)
T 1w63_A          142 ----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL---ME-MFLP--ATKNLLNEKNHGVLHTSVVLLTEMCERSP  211 (618)
T ss_dssp             ----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG---GG-GGGG--GTTTSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred             ----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH---HH-HHHH--HHHHHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence                57888999999999999999999999998866543   11 4555  67767788889999999999999999988


Q ss_pred             HHHHHHHhhccHHHHHhhcCC--------------CCcHHHHHhHHHHHHHHHhh-HHHHHHHHhcchHHHHHHHhcccc
Q 012448          202 SVASVIFKANLLTLLEEGVSK--------------KNDTLETLSILELLYELAEI-QHSAEFLSRTTLLQLLCSLIGNSA  266 (463)
Q Consensus       202 ~~~~~v~~sgl~~~ll~eL~~--------------~~DvLv~lnalell~eLa~t-~~g~~~L~~~gi~~~L~~~i~~~~  266 (463)
                      +..+...  .+++.++.-|++              ..|...|..++++|+.++.. +...     ..+.+-|...+....
T Consensus       212 ~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~  284 (618)
T 1w63_A          212 DMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTE  284 (618)
T ss_dssp             HHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSC
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccc
Confidence            7644443  466666554431              26999999999999999883 3321     223333433333211


Q ss_pred             --cchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCc
Q 012448          267 --TETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLP  344 (463)
Q Consensus       267 --~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~  344 (463)
                        .+.   .++++... +..   ++.+...+-.  ....++.+..++.+.|+.++-+|+++|+.|+...  ..++..   
T Consensus       285 ~~~~~---~~aV~~ea-~~~---i~~l~~~~~l--~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~--p~~~~~---  350 (618)
T 1w63_A          285 TSKNV---GNAILYET-VLT---IMDIKSESGL--RVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD--HNAVQR---  350 (618)
T ss_dssp             CSSTH---HHHHHHHH-HHH---HHHSCCCHHH--HHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH--HHHHGG---
T ss_pred             cccch---HHHHHHHH-HHH---HHhcCCCHHH--HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC--HHHHHH---
Confidence              111   01121100 000   0001000100  0123344445678899999999999999999742  222322   


Q ss_pred             hhHHHHHHHHHhhccc-h--hhHhHHhhhHHHhcC
Q 012448          345 PAARHVIDAAFDRQGH-G--KQLAALHGLANIAGK  376 (463)
Q Consensus       345 ~~~~~~l~~~~~~~~~-~--~k~r~L~al~~Il~~  376 (463)
                           ....++....+ .  .|.++++.+..+...
T Consensus       351 -----~~~~i~~~l~d~d~~Ir~~alelL~~l~~~  380 (618)
T 1w63_A          351 -----HRSTIVDCLKDLDVSIKRRAMELSFALVNG  380 (618)
T ss_dssp             -----GHHHHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred             -----HHHHHHHHccCCChhHHHHHHHHHHHHccc
Confidence                 22333333343 2  288999998888774

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.86  E-value=1.5e-07  Score=103.94  Aligned_cols=315  Identities=12%  Similarity=0.086  Sum_probs=198.4

Q ss_pred             hHHHHHccccCCCCcchHHHHHHHHHHHhccccc---cchhhchHHHHHHhhcCC--CHHHHHHHHHHHHHHHhCCchhH
Q 012448           41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG---ASLIPHYMPFVQVGLTAD--SHSVKRLACKTVTCLLEDSDLEA  115 (463)
Q Consensus        41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~---~~l~~~~~~~l~~gL~h~--~~~Vr~Lal~~l~~i~~~~~~~~  115 (463)
                      +|.|+.++++.+.++..++.+..+|..+.....+   ....+.+.+.+..++.++  ++.||..+++.++.++..-+.  
T Consensus       130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~--  207 (876)
T 1qgr_A          130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA--  207 (876)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH--
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH--
Confidence            5777888876510267788888888888765433   234455678889999998  799999999999998875411  


Q ss_pred             HHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC-ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHH
Q 012448          116 SCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG-IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIV  194 (463)
Q Consensus       116 ~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~-l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v  194 (463)
                      . .........+++.+...+.+++..+...|...|..+++..+. +...+...+++  .+.......++.+|..+++++.
T Consensus       208 ~-~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~v~~~al~~l~  284 (876)
T 1qgr_A          208 N-FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA--ITIEAMKSDIDEVALQGIEFWS  284 (876)
T ss_dssp             H-HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHH--HHHHHHTCSSHHHHHHHHHHHH
T ss_pred             H-HHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHhcCCchHHHHHHHHHHH
Confidence            1 111111113677778888999999999999999999876542 22112223444  3433455678899999999999


Q ss_pred             HHHhcCHHHH------------------HHH--HhhccHHHHHhhcCC------CCcHHHHHhHHHHHHHHHhhHHHHHH
Q 012448          195 KLFSVSRSVA------------------SVI--FKANLLTLLEEGVSK------KNDTLETLSILELLYELAEIQHSAEF  248 (463)
Q Consensus       195 ~ia~~S~~~~------------------~~v--~~sgl~~~ll~eL~~------~~DvLv~lnalell~eLa~t~~g~~~  248 (463)
                      .+++...+..                  ...  .-..+++.++..+..      .+|.-+|..+++++..++..-.. . 
T Consensus       285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~-  362 (876)
T 1qgr_A          285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-D-  362 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-G-
T ss_pred             HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-h-
Confidence            9987642110                  000  013456666666642      14567899999999999984221 1 


Q ss_pred             HHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccc-hhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHH
Q 012448          249 LSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSH-MFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALG  327 (463)
Q Consensus       249 L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG  327 (463)
                      +. ..++..+...+.+  .++-+|..++.+.|.+..  +.- ..+    ...++.++..++..+.++++.++..|+|++|
T Consensus       363 ~~-~~~l~~l~~~l~~--~~~~~r~~a~~~l~~i~~--~~~~~~~----~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~  433 (876)
T 1qgr_A          363 IV-PHVLPFIKEHIKN--PDWRYRDAAVMAFGCILE--GPEPSQL----KPLVIQAMPTLIELMKDPSVVVRDTAAWTVG  433 (876)
T ss_dssp             GH-HHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSS--SSCHHHH----HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             hH-HHHHHHHHHHccC--CChHHHHHHHHHHHHHHc--CCCHHHH----HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            11 1345555555543  567778777777777764  211 111    1224455555666677888999999999999


Q ss_pred             hhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchh--hHhHHhhhHHHhc
Q 012448          328 QIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGK--QLAALHGLANIAG  375 (463)
Q Consensus       328 ~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~--k~r~L~al~~Il~  375 (463)
                      .++......  . .. .+.+..++........+.+  |.++..+++.+..
T Consensus       434 ~~~~~~~~~--~-~~-~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~  479 (876)
T 1qgr_A          434 RICELLPEA--A-IN-DVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHCGGG--T-SS-TTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCchh--c-cc-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            998732221  0 01 3445556666555555433  5566666666654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.80  E-value=1.9e-07  Score=86.22  Aligned_cols=185  Identities=12%  Similarity=0.062  Sum_probs=145.5

Q ss_pred             CChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448           39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA  118 (463)
Q Consensus        39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~  118 (463)
                      -.++.|+..|++.+  +..+..++..|..+-.        +...+.|...|+++++.||..+++.++++-.         
T Consensus        19 ~~~~~L~~~L~~~~--~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------   79 (211)
T 3ltm_A           19 EKVEMYIKNLQDDS--YYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------   79 (211)
T ss_dssp             GGHHHHHHHTTCSS--HHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------
T ss_pred             hHHHHHHHHHcCCC--HHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence            34788999998765  7888888888888721        3567888999999999999999999999621         


Q ss_pred             HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448          119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS  198 (463)
Q Consensus       119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~  198 (463)
                            ++.++.++.++.|++..|...|+.+|.+++.          +..++  .|.+.+.+.+..+|..+...+.++..
T Consensus        80 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~--~L~~~l~d~~~~vr~~a~~aL~~~~~  141 (211)
T 3ltm_A           80 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVE--PLIKALKDEDWFVRIAAAFALGEIGD  141 (211)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHH--HHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHH--HHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence                  2467888889999999999999999999863          23455  67768888999999999999988853


Q ss_pred             cCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhH
Q 012448          199 VSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMI  278 (463)
Q Consensus       199 ~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili  278 (463)
                                 ...++.++..+++ +|.-||..+++.|..+..          ...+..|...+.+  .||.+|..+.-.
T Consensus       142 -----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d--~~~~vr~~A~~a  197 (211)
T 3ltm_A          142 -----------ERAVEPLIKALKD-EDGWVRQSAADALGEIGG----------ERVRAAMEKLAET--GTGFARKVAVNY  197 (211)
T ss_dssp             -----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH--CCHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC--CCHHHHHHHHHH
Confidence                       2567888888988 999999999999998853          3455666666664  678888777777


Q ss_pred             hhhhcc
Q 012448          279 SGRLLS  284 (463)
Q Consensus       279 ~g~i~~  284 (463)
                      .+.+..
T Consensus       198 L~~~~~  203 (211)
T 3ltm_A          198 LETHKS  203 (211)
T ss_dssp             HHC---
T ss_pred             HHhcCC
Confidence            776665

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.74  E-value=5.1e-07  Score=82.57  Aligned_cols=183  Identities=12%  Similarity=0.062  Sum_probs=143.6

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL  119 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~  119 (463)
                      ..+.++..|++.+  +..+..++..|..+-.        +...+.|...|+++++.||..+++.++++-  .        
T Consensus        15 ~~~~~i~~L~~~~--~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--~--------   74 (201)
T 3ltj_A           15 KVEMYIKNLQDDS--YYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--D--------   74 (201)
T ss_dssp             HHHHHHHHTTCSC--HHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C--------
T ss_pred             chHHHHHHhcCCC--HHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--C--------
Confidence            4678899998876  8888888888888721        346788899999999999999999999852  1        


Q ss_pred             HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhc
Q 012448          120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSV  199 (463)
Q Consensus       120 ~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~  199 (463)
                           ++.++.++..+.|++..|...|+.+|..+..          +..++  .|.+.+.+.+..+|..+...+.++.. 
T Consensus        75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~--~L~~~l~d~~~~vr~~a~~aL~~~~~-  136 (201)
T 3ltj_A           75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVE--PLIKALKDEDWFVRIAAAFALGEIGD-  136 (201)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHH--HHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHH--HHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence                 2457888889999999999999999998853          23455  66667788899999999999988853 


Q ss_pred             CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHh
Q 012448          200 SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMIS  279 (463)
Q Consensus       200 S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~  279 (463)
                                .+.++.+...+++ +|.-||..+++.|..+..          ...+..|...+.+  .||.+|..+.-..
T Consensus       137 ----------~~~~~~L~~~l~d-~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d--~~~~vr~~A~~aL  193 (201)
T 3ltj_A          137 ----------ERAVEPLIKALKD-EDGWVRQSAADALGEIGG----------ERVRAAMEKLAET--GTGFARKVAVNYL  193 (201)
T ss_dssp             ----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH--CCHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence                      3678888889999 999999999999998843          2355566666654  5777776666665


Q ss_pred             hhhc
Q 012448          280 GRLL  283 (463)
Q Consensus       280 g~i~  283 (463)
                      +.+.
T Consensus       194 ~~l~  197 (201)
T 3ltj_A          194 ETHK  197 (201)
T ss_dssp             HHCC
T ss_pred             HHHH
Confidence            5544

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=98.72  E-value=1.4e-07  Score=90.54  Aligned_cols=177  Identities=16%  Similarity=0.074  Sum_probs=145.8

Q ss_pred             hHHHHHHhhcCCCH--HHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448           81 YMPFVQVGLTADSH--SVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN  158 (463)
Q Consensus        81 ~~~~l~~gL~h~~~--~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~  158 (463)
                      -.+.++..|.++++  .|+..+++.+..+..++   .. ..+.+.+.|.+|.++..|..++..+...|+.+|..|+...+
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~---~~-~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~   84 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK---SE-ARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN   84 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC---HH-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC---cH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence            37889999999999  99999999999988766   45 66788899999999999999999999999999999998654


Q ss_pred             -CccccccCCCcchhhHhhHhh-cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcC---------------
Q 012448          159 -GIDIIFPADNKAATDLGNLVA-QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVS---------------  221 (463)
Q Consensus       159 -~l~~l~~~~~~~~~~L~~~~~-~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~---------------  221 (463)
                       .-..|...+.++  .|.+++. ..+..+|-.+...+-+++.+.. .-..+++. -++.++..+.               
T Consensus        85 ~nk~~I~~~GaI~--~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~  160 (233)
T 3tt9_A           85 DNKLEVAELNGVP--RLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN  160 (233)
T ss_dssp             HHHHHHHHTTHHH--HHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred             HHHHHHHHcCCHH--HHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence             446788999998  8887776 4688999999999999987643 33444444 4777776542               


Q ss_pred             CCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhc-chHHHHHHHhccc
Q 012448          222 KKNDTLETLSILELLYELAE-IQHSAEFLSRT-TLLQLLCSLIGNS  265 (463)
Q Consensus       222 ~~~DvLv~lnalell~eLa~-t~~g~~~L~~~-gi~~~L~~~i~~~  265 (463)
                      +..|.-++-|+..+|+-|+. .+++.+-|.+. |+++.|+.++...
T Consensus       161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~  206 (233)
T 3tt9_A          161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGT  206 (233)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhh
Confidence            11488999999999999998 67899989875 7789999999864

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.69  E-value=5.5e-07  Score=104.40  Aligned_cols=269  Identities=13%  Similarity=0.071  Sum_probs=179.9

Q ss_pred             CChHHHHHccccCCCCcchHHHHHHHHHHHhccccc---cchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhH
Q 012448           39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG---ASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEA  115 (463)
Q Consensus        39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~---~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~  115 (463)
                      +.++.|+..+.+.+  +..+..+..-|...+.....   .....++.+.+..+|.++++.||..|+..++.+++.... .
T Consensus         6 ~~l~~lL~~l~s~d--~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~   82 (1230)
T 1u6g_C            6 YHISNLLEKMTSSD--KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-Y   82 (1230)
T ss_dssp             HHHHHHHHHTTCSS--HHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-H
T ss_pred             hHHHHHHHhcCCCC--HhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-H
Confidence            34778888888765  77888887766666543211   123456788899999999999999999999999876522 1


Q ss_pred             HHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc------cccccCCCcchhhHhhHhh-cCCchhHHH
Q 012448          116 SCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI------DIIFPADNKAATDLGNLVA-QCSSLGRVR  188 (463)
Q Consensus       116 ~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l------~~l~~~~~~~~~~L~~~~~-~~~~~vR~R  188 (463)
                      . .      ..+++.++.++.|++..+...|..+|+.++..-..-      ..-+.+.+++  .|.+.+. +.+..+|.-
T Consensus        83 ~-~------~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp--~L~~~l~~~~~~~~~~~  153 (1230)
T 1u6g_C           83 Q-V------ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITG--RLTSAIAKQEDVSVQLE  153 (1230)
T ss_dssp             H-H------HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHH--HHHHHHSCCSCHHHHHH
T ss_pred             H-H------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHH--HHHHHHcCCCchHHHHH
Confidence            1 1      247888899999999999999999999997654311      0011223444  5554555 467789999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccc
Q 012448          189 VLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATE  268 (463)
Q Consensus       189 v~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~d  268 (463)
                      +++++.+++....+.+.. .-..+++.++..+.+ ++.-+|..++..+..++..... ++  -..+++.+.+.+.+..+ 
T Consensus       154 al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~~-~~--~~~~l~~l~~~L~~~~~-  227 (1230)
T 1u6g_C          154 ALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGN-IV--FVDLIEHLLSELSKNDS-  227 (1230)
T ss_dssp             HHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCS-
T ss_pred             HHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhcCH-HH--HHHHHHHHHHHhccCCc-
Confidence            999999998654332221 113688888899998 8999999999999999983221 12  23567788887776433 


Q ss_pred             hhhhhhhhhHhhhhcc-ccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCC
Q 012448          269 TILRSRAIMISGRLLS-KDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSS  332 (463)
Q Consensus       269 pl~r~~aili~g~i~~-f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss  332 (463)
                      +-.|.-++.+.|.+.. .+..  |.     ...+.++..+++.+.+.++..+..|++++|.++..
T Consensus       228 ~~~r~~a~~~l~~l~~~~~~~--~~-----~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~  285 (1230)
T 1u6g_C          228 MSTTRTYIQCIAAISRQAGHR--IG-----EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR  285 (1230)
T ss_dssp             SCSCTTHHHHHHHHHHHSSGG--GT-----TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHhHHH--HH-----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            3345455555555443 1221  11     11122333333445677889999999999998874

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.64  E-value=3.4e-06  Score=91.74  Aligned_cols=184  Identities=12%  Similarity=0.043  Sum_probs=132.6

Q ss_pred             CChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448           39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA  118 (463)
Q Consensus        39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~  118 (463)
                      +-.+.++.++++++  ...++.+-..+..+++  ...++.--....++..|+|+++.+|.+|++.++++.  .   .. .
T Consensus        74 ~~~~~vvkl~~s~~--~~~Krl~YL~l~~~~~--~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~---~e-~  143 (621)
T 2vgl_A           74 FGHMEAVNLLSSNR--YTEKQIGYLFISVLVN--SNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG--S---RE-M  143 (621)
T ss_dssp             SCHHHHHHGGGCSC--HHHHHHHHHHHHHSCC--CCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC--C---HH-H
T ss_pred             hhHHHHHHHhcCCC--HHHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC--C---HH-H
Confidence            34577778887765  4455555557777743  333444446889999999999999999999999983  2   33 4


Q ss_pred             HHHhhccCcHHHHHHhh--cCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448          119 LQLLIDYEIYPLLLDCL--INGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL  196 (463)
Q Consensus       119 ~~~~~~~~l~~~li~~l--~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i  196 (463)
                      ++     .+++.|..|+  .|++..|.+.|+-++.++.+..|.+  +-+++..+  .|.+.+...|..|+.-+..++.+|
T Consensus       144 ~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~--~~~~~~~~--~l~~lL~d~d~~V~~~a~~~l~~i  214 (621)
T 2vgl_A          144 AE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL--VPMGDWTS--RVVHLLNDQHLGVVTAATSLITTL  214 (621)
T ss_dssp             HH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG--CCCCSCHH--HHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh--cCchhHHH--HHHHHhCCCCccHHHHHHHHHHHH
Confidence            43     4677888999  9999999999999999998876643  22246666  888888888999999999999999


Q ss_pred             HhcCHHHHHHHHhh--ccHHHHHhh--cC-C------CCcHHHHHhHHHHHHHHHh
Q 012448          197 FSVSRSVASVIFKA--NLLTLLEEG--VS-K------KNDTLETLSILELLYELAE  241 (463)
Q Consensus       197 a~~S~~~~~~v~~s--gl~~~ll~e--L~-~------~~DvLv~lnalell~eLa~  241 (463)
                      +..+++.+..++..  .++..++..  .. .      ..|...|...+++++.++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~  270 (621)
T 2vgl_A          215 AQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP  270 (621)
T ss_dssp             HHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSS
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCC
Confidence            99998854432211  122222211  10 0      1278999999999988886

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=98.62  E-value=3.1e-06  Score=93.50  Aligned_cols=241  Identities=16%  Similarity=0.164  Sum_probs=169.3

Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchH---HHHHHHHHHHHHhCC
Q 012448           80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEE---VATASMDAIKKLAGF  156 (463)
Q Consensus        80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~---va~~A~~~L~~lak~  156 (463)
                      ++.+.|+..+.++++.+|+.+++.++.+..+.    . ....+++.|.++.|+..+.+....   +...|+.+|.+++-+
T Consensus       457 GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~----~-~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis  531 (778)
T 3opb_A          457 ELISFLKREMHNLSPNCKQQVVRIIYNITRSK----N-FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIF  531 (778)
T ss_dssp             THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG----G-GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH----H-HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc
Confidence            35888999999999999999999999998764    3 455677889999999999887544   788999999999854


Q ss_pred             CCCccccccC----CCcchhhHhhHhhc-CCc-------------hhHHHHHHHHHHHHhcC----HHHHHHHHhh-ccH
Q 012448          157 PNGIDIIFPA----DNKAATDLGNLVAQ-CSS-------------LGRVRVLSLIVKLFSVS----RSVASVIFKA-NLL  213 (463)
Q Consensus       157 ~~~l~~l~~~----~~~~~~~L~~~~~~-~~~-------------~vR~Rv~el~v~ia~~S----~~~~~~v~~s-gl~  213 (463)
                      .+- +.+|+.    ++++  -|.+++.. .+.             .-++.++-.+.++|+.+    ++.-..+++. |.+
T Consensus       532 ~np-~~~f~~~~~~~aI~--pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~  608 (778)
T 3opb_A          532 TNP-GLIFKKYSALNAIP--FLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW  608 (778)
T ss_dssp             SCH-HHHSSSSCSTTHHH--HHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH
T ss_pred             CCH-HHHcCCCccccchH--HHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH
Confidence            431 123321    4555  66645441 111             22888888999999997    4566667774 999


Q ss_pred             HHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHH--HHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchh
Q 012448          214 TLLEEGVSKKNDTLETLSILELLYELAEIQHSA--EFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMF  291 (463)
Q Consensus       214 ~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~--~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~  291 (463)
                      +.+.+.|.+ +...+|.+|+|++.-|+..+.+.  +|              .+ .++|                      
T Consensus       609 ~~L~~LL~s-~n~~VrrAA~elI~NL~~~~e~i~~k~--------------~~-~~~~----------------------  650 (778)
T 3opb_A          609 STIENLMLD-ENVPLQRSTLELISNMMSHPLTIAAKF--------------FN-LENP----------------------  650 (778)
T ss_dssp             HHHHHGGGC-SSHHHHHHHHHHHHHHHTSGGGTGGGT--------------SC-CSSH----------------------
T ss_pred             HHHHHHHhC-CCHHHHHHHHHHHHHHhCCcHHHHHHH--------------Hh-hcCc----------------------
Confidence            999999999 88999999999999888754321  11              00 0011                      


Q ss_pred             cchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhcCchhHHHHHHHHHhhc-cc-hhhHhHHh
Q 012448          292 IDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLCLPPAARHVIDAAFDRQ-GH-GKQLAALH  368 (463)
Q Consensus       292 ~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~~~~~~l~~~~~~~-~~-~~k~r~L~  368 (463)
                        + ..++++.++.    ++++.|...+.+|.|+|+++.+ ...-.+.+... ...+..++. ++..+ .+ +-+.|++-
T Consensus       651 --~-~~~rL~lLV~----Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~-~~gi~~Ll~-lL~~~~~~~~l~~R~~~  721 (778)
T 3opb_A          651 --Q-SLRNFNILVK----LLQLSDVESQRAVAAIFANIATTIPLIAKELLTK-KELIENAIQ-VFADQIDDIELRQRLLM  721 (778)
T ss_dssp             --H-HHHHHHHHHH----GGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTC-HHHHHHHHH-HHHHTTTCHHHHHHHHH
T ss_pred             --h-hhccHHHHHH----HHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc-cccHHHHHH-HHhccCCCHHHHHHHHH
Confidence              0 2233555554    5678999999999999999965 55556666653 234444444 44443 22 33999999


Q ss_pred             hhHHHhc
Q 012448          369 GLANIAG  375 (463)
Q Consensus       369 al~~Il~  375 (463)
                      ++.++..
T Consensus       722 ~l~NL~~  728 (778)
T 3opb_A          722 LFFGLFE  728 (778)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9999996

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.62  E-value=4.2e-07  Score=105.38  Aligned_cols=229  Identities=14%  Similarity=0.172  Sum_probs=157.2

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhH--HH
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEA--SC  117 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~--~~  117 (463)
                      .++.|+.+|.+.+  +..+..++.+|..+.....+ ...+.+.+.+..+|.++++.||..++..++.++.......  ..
T Consensus        49 il~~Ll~~L~d~~--~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~  125 (1230)
T 1u6g_C           49 VVKMILKLLEDKN--GEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA  125 (1230)
T ss_dssp             HHHHHHHHTTCSS--HHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred             HHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccc
Confidence            4567889998654  78888888899998764433 4556788999999999999999999999999987652210  00


Q ss_pred             HHHHhhccCcHHHHHHhhcC-CchHHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHH
Q 012448          118 ALQLLIDYEIYPLLLDCLIN-GNEEVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVK  195 (463)
Q Consensus       118 ~~~~~~~~~l~~~li~~l~d-~d~~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~  195 (463)
                      .. .-.-+.++|.++.++.+ ++..+...|+.+|.++++..+ .+.. +-+..++  .|.+.+.+.+..+|.++...+..
T Consensus       126 ~~-~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~--~l~~~L~~~~~~vR~~a~~al~~  201 (1230)
T 1u6g_C          126 LA-ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILT--CLLPQLTSPRLAVRKRTIIALGH  201 (1230)
T ss_dssp             TH-HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHH--HHGGGGGCSSHHHHHHHHHHHHH
T ss_pred             hH-HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHH--HHHHHHcCCcHHHHHHHHHHHHH
Confidence            00 11123689999999994 889999999999999985432 2221 1123444  55556677888999999999999


Q ss_pred             HHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhh-HH-HHHHHHhcchHHHHHHHhcccccchhhhh
Q 012448          196 LFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEI-QH-SAEFLSRTTLLQLLCSLIGNSATETILRS  273 (463)
Q Consensus       196 ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t-~~-g~~~L~~~gi~~~L~~~i~~~~~dpl~r~  273 (463)
                      ++....+.+   . ..+++.++..|.+.+|.-++..+++++..++.. +. -..|+  ..+++.+...+.+  .||-+|.
T Consensus       202 l~~~~~~~~---~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~d--~~~~vR~  273 (1230)
T 1u6g_C          202 LVMSCGNIV---F-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNV--DDDELRE  273 (1230)
T ss_dssp             HTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSS--CCTTTHH
T ss_pred             HHHhcCHHH---H-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhcC--CCHHHHH
Confidence            998876543   1 256777777776633445688899999999983 22 11222  3678888887764  4555676


Q ss_pred             hhhhHhhhhc
Q 012448          274 RAIMISGRLL  283 (463)
Q Consensus       274 ~aili~g~i~  283 (463)
                      .++-..+.+.
T Consensus       274 ~a~~~l~~l~  283 (1230)
T 1u6g_C          274 YCIQAFESFV  283 (1230)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6665555543

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=98.58  E-value=4.3e-07  Score=87.19  Aligned_cols=197  Identities=13%  Similarity=0.069  Sum_probs=144.6

Q ss_pred             cCChHHHHHccccCCCCcchHHHHHHHHHHHhcccc-cc-ch-hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchh
Q 012448           38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKY-GA-SL-IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLE  114 (463)
Q Consensus        38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~-~~-~l-~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~  114 (463)
                      ...+|.++..|++.+.....+..++..|..+-.... .- .+ .....+.|+.-|.++++.||+.+++++..+..++   
T Consensus         7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~---   83 (233)
T 3tt9_A            7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED---   83 (233)
T ss_dssp             CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC---
T ss_pred             hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC---
Confidence            467899999999876222444455556666522111 11 22 3356899999999999999999999999998765   


Q ss_pred             HHHHHHHhhccCcHHHHHHhhc-CCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh--------------
Q 012448          115 ASCALQLLIDYEIYPLLLDCLI-NGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA--------------  179 (463)
Q Consensus       115 ~~~~~~~~~~~~l~~~li~~l~-d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~--------------  179 (463)
                      +. -...+.++|.+|.++..|. .++.++.+.|..+|..++.+...-..|... .++  .|..++.              
T Consensus        84 ~~-nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~--~Lv~ll~~p~sG~~~~~~~~~  159 (233)
T 3tt9_A           84 ND-NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALL--TLTENIIIPFSGWPEGDYPKA  159 (233)
T ss_dssp             HH-HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHH--HHCCCCCHHHHCCCGGGCCCC
T ss_pred             HH-HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHH--HHHHHHhccccCCcccccccc
Confidence            44 5667888999999999998 479999999999999999887543444432 333  3332221              


Q ss_pred             --cCCchhHHHHHHHHHHHHhcCHHHHHHHHhh-ccHHHHHhhcCCC-----CcHHHHHhHHHHHHHHHh
Q 012448          180 --QCSSLGRVRVLSLIVKLFSVSRSVASVIFKA-NLLTLLEEGVSKK-----NDTLETLSILELLYELAE  241 (463)
Q Consensus       180 --~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~s-gl~~~ll~eL~~~-----~DvLv~lnalell~eLa~  241 (463)
                        ..+..++..+-.++-++++.+++.=..+.+. |+++.++.-+++.     .|--.+=||+-.|+.|+.
T Consensus       160 ~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          160 NGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             CTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             cccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence              1366889999999999999999998888864 8889988887641     255667788888887753

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.58  E-value=1e-05  Score=87.56  Aligned_cols=350  Identities=12%  Similarity=0.121  Sum_probs=233.1

Q ss_pred             hHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCC--CHHHHHHHHHHHHHHHhCCchhHH--
Q 012448           41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTAD--SHSVKRLACKTVTCLLEDSDLEAS--  116 (463)
Q Consensus        41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~--~~~Vr~Lal~~l~~i~~~~~~~~~--  116 (463)
                      .+.|.+-|++.. -.+-|..++.-|+.+ +..++.++...-++.|..-|+..  |..+-..++..+..+....+++..  
T Consensus        23 I~~L~~Rl~~~t-l~eDRR~Av~~Lk~~-sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~  100 (651)
T 3grl_A           23 IQKLCDRVASST-LLDDRRNAVRALKSL-SKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEE  100 (651)
T ss_dssp             HHHHHHHHHHCC-SHHHHHHHHHHHHHT-TTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-------
T ss_pred             HHHHHHHHhhcc-chhHHHHHHHHHHHH-HHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccc
Confidence            567788887754 234466777778877 34567777777788888888876  556666688888887765432110  


Q ss_pred             -----------HHHH-HhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC-c-cccc-cCCCcchhhHhhHhhcC
Q 012448          117 -----------CALQ-LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG-I-DIIF-PADNKAATDLGNLVAQC  181 (463)
Q Consensus       117 -----------~~~~-~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~-l-~~l~-~~~~~~~~~L~~~~~~~  181 (463)
                                 ..++ .+.+++-+++++.+|.++|-.+.-.|+..|+.++.+.+. . +.|. .|..++  .|...+...
T Consensus       101 ~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~--~Lv~lL~d~  178 (651)
T 3grl_A          101 NSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVS--RLMDLLADS  178 (651)
T ss_dssp             -------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHH--HHHGGGGCS
T ss_pred             cccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHH--HHHHHHhCc
Confidence                       0222 335678899999999999999999999999999988886 4 5566 667788  888788888


Q ss_pred             CchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcH----HHHHhHHHHHHHHHh-hHHHHHHHHhcchHH
Q 012448          182 SSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDT----LETLSILELLYELAE-IQHSAEFLSRTTLLQ  256 (463)
Q Consensus       182 ~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~Dv----Lv~lnalell~eLa~-t~~g~~~L~~~gi~~  256 (463)
                      .+.+|.-+.-++.++.+.+++.-..++-.|.|+.+++-++. +-.    .+.-.|+.++..|.+ .+..=+|..+.|.++
T Consensus       179 rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~-Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~  257 (651)
T 3grl_A          179 REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE-EGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQ  257 (651)
T ss_dssp             SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH-HTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGG
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh-cCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999998877 433    677899999999999 555667777889999


Q ss_pred             HHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhh--hhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHH
Q 012448          257 LLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESS--AKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQ  334 (463)
Q Consensus       257 ~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~--~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~e  334 (463)
                      +|..++....+++                    -|.+|-.  ..++...+..+   +..... .           +.+..
T Consensus       258 ~L~~LL~~~~~~~--------------------~W~~Qk~~N~~~~L~iIrlL---v~~~~~-~-----------~~t~~  302 (651)
T 3grl_A          258 RMKPWFEVGDENS--------------------GWSAQKVTNLHLMLQLVRVL---VSPNNP-P-----------GATSS  302 (651)
T ss_dssp             GGGGGGCCCSCSS--------------------CCCHHHHHHHHHHHHHHHHH---TCTTSC-H-----------HHHHH
T ss_pred             HHHHHhCCCcccc--------------------ccHHHHHHHHHHHHHHHHHH---hCCCCC-C-----------CCCHH
Confidence            9976664311111                    1222211  11133334322   112111 0           02223


Q ss_pred             HHHHHhhcCchhHHHHHHHHHhhccc-hhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHH-hhCCCCChh--
Q 012448          335 GATLLLLCLPPAARHVIDAAFDRQGH-GKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVA-SRSSKLTPS--  410 (463)
Q Consensus       335 Gk~~L~~~~~~~~~~~l~~~~~~~~~-~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~-~~~~~~~p~--  410 (463)
                      .-+.+.+  .+.+..++...+..... ..|..|+.+++.+..-.  +.     .|..  +     ... ..+....|.  
T Consensus       303 nQ~~~~~--~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN--~~-----~Q~~--f-----a~~~vp~~~~~p~li  366 (651)
T 3grl_A          303 CQKAMFQ--CGLLQQLCTILMATGVPADILTETINTVSEVIRGC--QV-----NQDY--F-----ASVNAPSNPPRPAIV  366 (651)
T ss_dssp             HHHHHHH--TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTC--HH-----HHHH--H-----HHCEESSSSCEEHHH
T ss_pred             HHHHHHH--CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCC--HH-----HHHH--H-----hhccCCCCCCcChHH
Confidence            3444444  35667777766653222 23888999999987643  21     1111  1     110 001111222  


Q ss_pred             HHHHHHh--cCCHHHHHHHHHHHHHhhcC-chhHHHhhh
Q 012448          411 GLFLSVL--QQAAEIRLAGYRMITGLVAR-PWCLMELCS  446 (463)
Q Consensus       411 ~~~~~~~--qpF~elr~A~~~~l~~l~~~-~Wg~~~i~~  446 (463)
                      .+++++.  .+-+++|+||...+++.+.. +-+|.++.+
T Consensus       367 ~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~  405 (651)
T 3grl_A          367 VLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVS  405 (651)
T ss_dssp             HHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            2344544  67899999999999999855 566766654

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.56  E-value=3.1e-07  Score=87.11  Aligned_cols=188  Identities=15%  Similarity=0.144  Sum_probs=139.2

Q ss_pred             HhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccc--cchhhchHHHHHHhhc-CCCHHHHHHHHHHHHHHHhCCc
Q 012448           36 LDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG--ASLIPHYMPFVQVGLT-ADSHSVKRLACKTVTCLLEDSD  112 (463)
Q Consensus        36 ~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~--~~l~~~~~~~l~~gL~-h~~~~Vr~Lal~~l~~i~~~~~  112 (463)
                      .+.++ +.++..+++.+  -..+..+...|..+......  ..-..++.+.|...|. .+++.||..++..++.++.+-.
T Consensus        13 ~~~l~-~~l~~~l~s~~--w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~   89 (242)
T 2qk2_A           13 LSKMP-KDFYDKLEEKK--WTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA   89 (242)
T ss_dssp             GGGSC-TTHHHHHTCSS--HHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred             cccCC-HHHHhhhccCC--HHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence            34444 56888887655  45666677777777654211  2223567888999995 9999999999999999986542


Q ss_pred             hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHH
Q 012448          113 LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSL  192 (463)
Q Consensus       113 ~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el  192 (463)
                      .  . ....+  ..+++.|+.+++|++..|...|..+|..+....+ ++     .+++  .|...+.+.|..+|..++.+
T Consensus        90 ~--~-~~~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~-----~ll~--~l~~~l~~~~~~vr~~~l~~  156 (242)
T 2qk2_A           90 K--R-FSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE-----AQQE--SIVESLSNKNPSVKSETALF  156 (242)
T ss_dssp             G--G-GHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH-----HHHH--HHHHHTTCSCHHHHHHHHHH
T ss_pred             h--h-HHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH-----HHHH--HHHHHHcCCChHHHHHHHHH
Confidence            1  1 11111  2489999999999999999999999999987652 22     2344  55557778899999999999


Q ss_pred             HHHHHhc-CHHH--HHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhh
Q 012448          193 IVKLFSV-SRSV--ASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEI  242 (463)
Q Consensus       193 ~v~ia~~-S~~~--~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t  242 (463)
                      +..+... +++.  ..++  ..+++.+...+.| .+.-||..|.+++..++..
T Consensus       157 l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D-~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          157 IARALTRTQPTALNKKLL--KLLTTSLVKTLNE-PDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             HHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCccHHHH--HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHH
Confidence            9996544 3441  2233  2688999999999 9999999999999999973

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.42  E-value=1.6e-06  Score=83.56  Aligned_cols=196  Identities=11%  Similarity=0.056  Sum_probs=140.5

Q ss_pred             HHHhcCChHHHHHccccCCCCcchHHHHHHHHHH-Hhcccccc-----chhhchHHHHHHhh-cCCCHHHHHHHHHHHHH
Q 012448           34 KFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLER-IFKTKYGA-----SLIPHYMPFVQVGL-TADSHSVKRLACKTVTC  106 (463)
Q Consensus        34 ~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~-il~~~~~~-----~l~~~~~~~l~~gL-~h~~~~Vr~Lal~~l~~  106 (463)
                      ++++++|- .++..+++.+  ...|+.+...|.. ++.. .+.     .-..++.+.|..+| +.++..||..+++.++.
T Consensus        12 ~i~~kl~~-~f~~~l~s~~--w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~   87 (249)
T 2qk1_A           12 TILDKLPK-DFQERITSSK--WKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVEL   87 (249)
T ss_dssp             CCGGGSCT-THHHHHTCSS--HHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             hhhhhCCh-hHHHHhhcCC--HHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            45566664 6777887665  4445555556666 6532 111     11235678888999 89999999999999999


Q ss_pred             HHhCCchhHHHHH-HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccc--cCCCcchhhHhhHhhcCCc
Q 012448          107 LLEDSDLEASCAL-QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIF--PADNKAATDLGNLVAQCSS  183 (463)
Q Consensus       107 i~~~~~~~~~~~~-~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~--~~~~~~~~~L~~~~~~~~~  183 (463)
                      ++++-..  .... ...  ..++|.++..++|....|...|..+|..++++.+.. ...  -+.+++  .|...+.+++.
T Consensus        88 la~~l~~--~~f~~~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~-~~~~~l~~ll~--~l~~~l~~k~~  160 (249)
T 2qk1_A           88 ICDKLKT--PGFSKDYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL-ASSGRNEDMLK--DILEHMKHKTP  160 (249)
T ss_dssp             HHHHHCT--TTSCHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT-CTTCTTHHHHH--HHHHHTTCSSH
T ss_pred             HHHhccc--ccccHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc-ccCCcHHHHHH--HHHHHHcCCCh
Confidence            9853310  0010 111  137899999999999999999999999998755311 111  113444  55557778899


Q ss_pred             hhHHHHHHHHHHHHhcCH---HHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448          184 LGRVRVLSLIVKLFSVSR---SVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE  241 (463)
Q Consensus       184 ~vR~Rv~el~v~ia~~S~---~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~  241 (463)
                      .+|..++.++..++..+.   +.+.......+++.+...+.+ .|.-||-.|.+++..++.
T Consensus       161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D-~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND-TQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence            999999999999998887   445444434799999999999 999999999999999987

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.36  E-value=0.00019  Score=78.02  Aligned_cols=324  Identities=11%  Similarity=0.106  Sum_probs=190.7

Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc
Q 012448           81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI  160 (463)
Q Consensus        81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l  160 (463)
                      ....+...+.+++..+|+++--.+..+++.+   .. ..-+++|     .+..-+++++.-+...|+.+|..+..  +.+
T Consensus        75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~---~e-~~~L~iN-----~l~kDl~~~n~~ir~lALr~L~~i~~--~e~  143 (621)
T 2vgl_A           75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN---SE-LIRLINN-----AIKNDLASRNPTFMGLALHCIANVGS--REM  143 (621)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC---HH-HHHHHHH-----HHHHHHHSCCHHHHHHHHHHHHHHCC--HHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC---cH-HHHHHHH-----HHHHhcCCCCHHHHHHHHHHhhccCC--HHH
Confidence            4556667999999999999999999887665   33 4433322     45567889999999999999999953  222


Q ss_pred             cccccCCCcchhhHhhHh--hcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHH
Q 012448          161 DIIFPADNKAATDLGNLV--AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYE  238 (463)
Q Consensus       161 ~~l~~~~~~~~~~L~~~~--~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~e  238 (463)
                         . +.+.+  .+.+.+  .+.++.||..+.-++.++.+++++....   .++++.+...|.+ .|..|+.+|+-++.+
T Consensus       144 ---~-~~l~~--~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~---~~~~~~l~~lL~d-~d~~V~~~a~~~l~~  213 (621)
T 2vgl_A          144 ---A-EAFAG--EIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM---GDWTSRVVHLLND-QHLGVVTAATSLITT  213 (621)
T ss_dssp             ---H-HHHTT--HHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC---CSCHHHHHHHTTC-SCHHHHHHHHHHHHH
T ss_pred             ---H-HHHHH--HHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc---hhHHHHHHHHhCC-CCccHHHHHHHHHHH
Confidence               1 23444  677677  7899999999999999999999987653   5899999999999 999999999999999


Q ss_pred             HHh-hHHHHHHHHhcchHHHHHHHhccccc-----------chhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHH
Q 012448          239 LAE-IQHSAEFLSRTTLLQLLCSLIGNSAT-----------ETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDG  306 (463)
Q Consensus       239 La~-t~~g~~~L~~~gi~~~L~~~i~~~~~-----------dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~  306 (463)
                      ++. .+....-+. ...++.|..++.....           ||+.+...+-+.+.+.+.++      .-..+.+..+++.
T Consensus       214 i~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d------~~~~~~l~~~L~~  286 (621)
T 2vgl_A          214 LAQKNPEEFKTSV-SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPED------PAVRGRLTECLET  286 (621)
T ss_dssp             HHHHCHHHHTTHH-HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSS------HHHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHH-HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHH
Confidence            998 444321111 1233334444433211           78866444444444443110      0012223344444


Q ss_pred             HhccccC-C--------C--hhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccc-hh--hHhHHhhhHH
Q 012448          307 RLGFLQS-Q--------D--SDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGH-GK--QLAALHGLAN  372 (463)
Q Consensus       307 ~f~~~~~-~--------d--~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~-~~--k~r~L~al~~  372 (463)
                      +++..++ +        .  ..+.-.|+.++-.++.+           ++....+++.++..+.+ .+  |.-+|+++..
T Consensus       287 il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-----------~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~  355 (621)
T 2vgl_A          287 ILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-----------PNLLVRACNQLGQFLQHRETNLRYLALESMCT  355 (621)
T ss_dssp             HHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred             HHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence            4433221 1        1  13333344444444322           22334455555555543 33  7788888888


Q ss_pred             HhcCCCch------hhhhh---h-hhHHHHHHHHHHHHHhhCCCCChhH----HHHHHh-cCCHHHHHHHHHHHHHhhc-
Q 012448          373 IAGKTRSE------DKIIL---N-ADAEESLRHLIYEVASRSSKLTPSG----LFLSVL-QQAAEIRLAGYRMITGLVA-  436 (463)
Q Consensus       373 Il~~~r~~------~~~il---~-~~~e~~l~~~~ye~~~~~~~~~p~~----~~~~~~-qpF~elr~A~~~~l~~l~~-  436 (463)
                      |......+      ...++   . ++. ..++...-+..+.....+..+    -+..+. ...+++|..+.+-+..+|. 
T Consensus       356 l~~~~~~~~~~~~~~~~i~~~L~~d~d-~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k  434 (621)
T 2vgl_A          356 LASSEFSHEAVKTHIETVINALKTERD-VSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEK  434 (621)
T ss_dssp             HTTCTTTHHHHHTTHHHHHHHHTTCCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCcHHHHHHHHHHHHHHhccCCC-HhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            87654110      01111   1 111 123322223333322122222    244555 6677888777777766663 


Q ss_pred             ----CchhHHHh
Q 012448          437 ----RPWCLMEL  444 (463)
Q Consensus       437 ----~~Wg~~~i  444 (463)
                          ..|++..+
T Consensus       435 ~~~~~~~~v~~L  446 (621)
T 2vgl_A          435 YAVDYTWYVDTI  446 (621)
T ss_dssp             HCSSTHHHHHHH
T ss_pred             cCCcHHHHHHHH
Confidence                47776533

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.31  E-value=3.9e-05  Score=83.02  Aligned_cols=297  Identities=13%  Similarity=0.138  Sum_probs=210.6

Q ss_pred             HHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc----------------------h--hhchHHHHHHhhc
Q 012448           35 FLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS----------------------L--IPHYMPFVQVGLT   90 (463)
Q Consensus        35 ~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~----------------------l--~~~~~~~l~~gL~   90 (463)
                      -|...-++.|++.|+...++   .+.+..+|+.++....+..                      +  .+.....|...|+
T Consensus        56 ~Vg~~~l~~li~~L~~d~~D---~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~  132 (651)
T 3grl_A           56 EVGIQAMEHLIHVLQTDRSD---SEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE  132 (651)
T ss_dssp             HHHHHTHHHHHHHHHSCTTC---HHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT
T ss_pred             HhhhhhHHHHHHHHhccccc---HHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc
Confidence            34455688999999875433   4555566666543222211                      1  1223777888999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCchhHHHHHH--HhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccc-cCC
Q 012448           91 ADSHSVKRLACKTVTCLLEDSDLEASCALQ--LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIF-PAD  167 (463)
Q Consensus        91 h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~--~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~-~~~  167 (463)
                      +++--||--+++-+..+..+.   .. ..|  ++..++-++.++..|.|+..-+...|+-.|..++++.+.+|.++ -.+
T Consensus       133 ~~df~vR~~alqlL~~L~~~r---~~-~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEn  208 (651)
T 3grl_A          133 EFDFHVRWPGVKLLTSLLKQL---GP-QVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFEN  208 (651)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHS---HH-HHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CccHHHHHHHHHHHHHHHhcC---cH-HHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence            999999999999999999877   33 333  45577999999999999999999999999999999999886555 447


Q ss_pred             CcchhhHhhHhhcCC----chhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcH-----HHHHh---HHHH
Q 012448          168 NKAATDLGNLVAQCS----SLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDT-----LETLS---ILEL  235 (463)
Q Consensus       168 ~~~~~~L~~~~~~~~----~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~Dv-----Lv~ln---alel  235 (463)
                      +++  .|-+++....    .++--+.+.++.++.+.++..-.+..|+|.++++..-++..++.     -.-.|   ++++
T Consensus       209 aFe--~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~i  286 (651)
T 3grl_A          209 AFE--RLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQL  286 (651)
T ss_dssp             HHH--HHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHH
T ss_pred             cHH--HHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHH
Confidence            777  6665665443    48888999999999999999999999999999999888762321     23455   7888


Q ss_pred             HHHHHhh-------HHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccc---hh--cchhhhhhhHHH
Q 012448          236 LYELAEI-------QHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSH---MF--IDESSAKTVISA  303 (463)
Q Consensus       236 l~eLa~t-------~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~---~~--~~~~~~k~~p~~  303 (463)
                      ++=|...       +..-+-+.+.|++..|++.+.......-++..++.+.|-+.- |+-.   .|  ++-|....-|..
T Consensus       287 IrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ir-gN~~~Q~~fa~~~vp~~~~~p~l  365 (651)
T 3grl_A          287 VRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIR-GCQVNQDYFASVNAPSNPPRPAI  365 (651)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHCEESSSSCEEHH
T ss_pred             HHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHhhccCCCCCCcChH
Confidence            8887662       344567889999999999988765444457778877777554 1211   11  110001113455


Q ss_pred             HHHHhccccC-CChhhhhHHHHHHHhhcC-CHHHHHHHhh
Q 012448          304 IDGRLGFLQS-QDSDECESALEALGQIGS-SIQGATLLLL  341 (463)
Q Consensus       304 l~~~f~~~~~-~d~~~~~~A~dtlG~Igs-s~eGk~~L~~  341 (463)
                      +..+..++.+ +...++.+|..++..+-. +.+|+..+..
T Consensus       366 i~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~  405 (651)
T 3grl_A          366 VVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVS  405 (651)
T ss_dssp             HHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            5545556655 446889999999999987 5566655554

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.30  E-value=7.4e-07  Score=97.98  Aligned_cols=166  Identities=14%  Similarity=0.142  Sum_probs=123.7

Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHH-HHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448           80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPL-LLDCLINGNEEVATASMDAIKKLAGFPN  158 (463)
Q Consensus        80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~-li~~l~d~d~~va~~A~~~L~~lak~~~  158 (463)
                      ++.+.|+. |+++++.+|..||++|+.++.+.    . ..+++...++++. +..++.|++.+|...|..+|..|+.+..
T Consensus        35 ~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~----~-~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g  108 (684)
T 4gmo_A           35 KILPVLKD-LKSPDAKSRTTAAGAIANIVQDA----K-CRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE  108 (684)
T ss_dssp             TTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSH----H-HHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCc----H-HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence            45666655 99999999999999999998643    3 4556666677665 5578999999999999999999986531


Q ss_pred             -Cc-cccccCCCcchhhHhhHhhcC-------------CchhH--------HHHHHHHHHHHhcCHHHHHHHHhhccHHH
Q 012448          159 -GI-DIIFPADNKAATDLGNLVAQC-------------SSLGR--------VRVLSLIVKLFSVSRSVASVIFKANLLTL  215 (463)
Q Consensus       159 -~l-~~l~~~~~~~~~~L~~~~~~~-------------~~~vR--------~Rv~el~v~ia~~S~~~~~~v~~sgl~~~  215 (463)
                       .. ..++..++++  .|...+.+.             ....+        -.++.++..++..|.+.++.+.+++.++.
T Consensus       109 ~d~~~~l~~~~il~--~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~  186 (684)
T 4gmo_A          109 ADFCVHLYRLDVLT--AIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILR  186 (684)
T ss_dssp             HHHHHHHHHTTHHH--HHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHH
T ss_pred             chHHHHHHHcChHH--HHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHH
Confidence             22 3455556655  444333211             11111        13567889999999999999999999999


Q ss_pred             HHhhcCCCCcH---HHHHhHHHHHHHHHh-hHHHHHHHHhcch
Q 012448          216 LEEGVSKKNDT---LETLSILELLYELAE-IQHSAEFLSRTTL  254 (463)
Q Consensus       216 ll~eL~~~~Dv---Lv~lnalell~eLa~-t~~g~~~L~~~gi  254 (463)
                      ++..|-+ .|.   =++.+++++|+.+++ .+...+.+.+.|.
T Consensus       187 l~~~L~~-~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~  228 (684)
T 4gmo_A          187 LLFRLIS-ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQE  228 (684)
T ss_dssp             HHHHHHH-HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCS
T ss_pred             HHHHHHh-cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcch
Confidence            9999866 443   489999999999999 6677777777664

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.96  E-value=0.0011  Score=61.13  Aligned_cols=220  Identities=12%  Similarity=0.080  Sum_probs=154.5

Q ss_pred             HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHH--HHHHHHHH
Q 012448          118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRV--RVLSLIVK  195 (463)
Q Consensus       118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~--Rv~el~v~  195 (463)
                      +.+.-.|.+++..+|..|-|.-=.|.+-|+.+++.+++..|.+..    +...  +|- .+.++++.+-.  -+-..+-+
T Consensus        24 i~~a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~e----pl~~--kL~-vm~~ksEaIpltqeIa~a~G~   96 (253)
T 2db0_A           24 LIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE----PMLK--KLF-SLLKKSEAIPLTQEIAKAFGQ   96 (253)
T ss_dssp             HHHHHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHH----HHHH--HHH-HHHHHCCSHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHH----HHHH--HHH-HHHhhcccCchHHHHHHHHhH
Confidence            666777888999999998887778999999999999999886621    2222  555 33356666554  45567888


Q ss_pred             HHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhh
Q 012448          196 LFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSR  274 (463)
Q Consensus       196 ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~  274 (463)
                      +++..|+.-.     +..|.+...+.- .|.-.|.|..-.|.+++. .|..+-     +++..|..++.+.+  ...|  
T Consensus        97 la~i~Pe~v~-----~vVp~lfanyri-gd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd--~~Dk--  161 (253)
T 2db0_A           97 MAKEKPELVK-----SMIPVLFANYRI-GDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKN--REDK--  161 (253)
T ss_dssp             HHHHCHHHHH-----HHHHHHHHHSCC-CSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSS--HHHH--
T ss_pred             HHHhCHHHHH-----hhHHHHHHHHhc-CCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCC--hHHH--
Confidence            8999998866     456888888988 799999999999999999 777554     56677777777432  2223  


Q ss_pred             hhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHH
Q 012448          275 AIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAA  354 (463)
Q Consensus       275 aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~  354 (463)
                       +-+..||.+-|.-       -.++.-+|+.++|.++...|...+..|++||+.++...           ++++.++...
T Consensus       162 -l~aLnFi~alGen-------~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n-----------pklRkii~~k  222 (253)
T 2db0_A          162 -LTALNFIEAMGEN-------SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN-----------DKLRKVVIKR  222 (253)
T ss_dssp             -HHHHHHHHTCCTT-------THHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-----------HHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcc-------CccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC-----------HHHHHHHHHH
Confidence             2235676664322       12334467888888999999999999999999998843           3455555555


Q ss_pred             Hhhccchh---hHhHHhhhHHHhcCCC
Q 012448          355 FDRQGHGK---QLAALHGLANIAGKTR  378 (463)
Q Consensus       355 ~~~~~~~~---k~r~L~al~~Il~~~r  378 (463)
                      +......+   +...-.+|+.|.-.+|
T Consensus       223 l~e~~D~S~lv~~~V~egL~rl~l~e~  249 (253)
T 2db0_A          223 LEELNDTSSLVNKTVKEGISRLLLLEG  249 (253)
T ss_dssp             HHHCCCSCHHHHHHHHHHHHHHHHC--
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence            54444322   4455567776665553

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.94  E-value=0.00043  Score=70.24  Aligned_cols=206  Identities=12%  Similarity=0.125  Sum_probs=144.2

Q ss_pred             CCChHHHHHHhhhhccCCCCCCh--HHHHHHH----hcCCh-----HHHHH----ccccCCCCcchHHHHHHHHHHHhcc
Q 012448            7 MDDSNQLLDSASDFAYHPGVQND--AAAKKFL----DRFPL-----SVILN----TLQTKPDVPGLEDTLVVCLERIFKT   71 (463)
Q Consensus         7 ~~~~~~~~~~~~~~a~~p~~~s~--~~~~~~~----~~~~l-----~~L~~----~L~~~~~~~~~~~~~~~vL~~il~~   71 (463)
                      ..|-.+.+|.|+-|.+-|-...-  ...+.++    .+.++     ..+|.    ++++.+  ...++.+=..+..+.+.
T Consensus        21 ~~~k~~v~qe~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d--~~lKrLvYLyl~~~~~~   98 (355)
T 3tjz_B           21 HLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSND--PTLRRMCYLTIKEMSCI   98 (355)
T ss_dssp             CCCHHHHHHHGGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCC--HHHHHHHHHHHHHHTTT
T ss_pred             cchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCCC
Confidence            45777899999999998753221  1233332    33443     24444    888876  66666666688777443


Q ss_pred             ccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHH
Q 012448           72 KYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIK  151 (463)
Q Consensus        72 ~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~  151 (463)
                        +.+.. -+...|+.=++||+|-+|-+|++.+++|....      .++     .+.+.+-.||.|.+..|.+.|+-+..
T Consensus        99 --~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~------m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~  164 (355)
T 3tjz_B           99 --AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDST------MLQ-----AIERYMKQAIVDKVPSVSSSALVSSL  164 (355)
T ss_dssp             --SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT------THH-----HHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             --HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH------HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence              55544 57899999999999999999999999985533      333     36677889999999999999999999


Q ss_pred             HHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHh
Q 012448          152 KLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLS  231 (463)
Q Consensus       152 ~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~ln  231 (463)
                      ++....|.+   +. +.+.  .+++.+...|..|-+.+..++.+|..++..++...     ++.+-.. .- .|.+.+.-
T Consensus       165 kL~~~~pe~---v~-~~~~--~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kL-----v~~l~~~-~l-~~~~~q~~  231 (355)
T 3tjz_B          165 HLLKCSFDV---VK-RWVN--EAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKM-----ISKFTRH-GL-KSPFAYCM  231 (355)
T ss_dssp             HHTTTCHHH---HH-TTHH--HHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHH-----HHHHHSS-CC-SCHHHHHH
T ss_pred             HHhccCHHH---HH-HHHH--HHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHH-----HHHHhcC-CC-cChHHHHH
Confidence            998777643   22 4555  77878888899999999999999999887655543     2332211 11 36777766


Q ss_pred             HHHHHHHHHh
Q 012448          232 ILELLYELAE  241 (463)
Q Consensus       232 alell~eLa~  241 (463)
                      .+.+++.++.
T Consensus       232 llr~l~~~~~  241 (355)
T 3tjz_B          232 MIRVASRQLE  241 (355)
T ss_dssp             HHHHHTCC--
T ss_pred             HHHHHHHhcc
Confidence            6666556655

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.83  E-value=0.00042  Score=65.29  Aligned_cols=186  Identities=12%  Similarity=0.070  Sum_probs=134.3

Q ss_pred             HHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhh-cCCchhHHHHHHHHHHHHhcCHHHHHHH
Q 012448          130 LLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVA-QCSSLGRVRVLSLIVKLFSVSRSVASVI  207 (463)
Q Consensus       130 ~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~-~~~~~vR~Rv~el~v~ia~~S~~~~~~v  207 (463)
                      .+...+.+.+-...+.|+..|..+.+..+++ ..-+ .++.+  .|.+.+. ..|..+|.-++.++..+++.-...++..
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~--~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVS--ALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHH--HHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHH--HHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4567888999999999999999998763333 1111 13344  5666664 8899999999999999997644444443


Q ss_pred             HhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcc-cc
Q 012448          208 FKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLS-KD  286 (463)
Q Consensus       208 ~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~-f~  286 (463)
                      + ..+++.++..+.+ ...-+|-.+.+.+..+++..+-      ..++..|...+.+  .+|.+|.-++-..+.+.. ++
T Consensus        96 ~-~~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~--~~~~vr~~~l~~l~~~l~~~~  165 (242)
T 2qk2_A           96 A-SACVPSLLEKFKE-KKPNVVTALREAIDAIYASTSL------EAQQESIVESLSN--KNPSVKSETALFIARALTRTQ  165 (242)
T ss_dssp             H-HHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCC
T ss_pred             H-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHcC
Confidence            3 3689999999999 8999999999999999984321      2355666666654  478888777766666543 21


Q ss_pred             ccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCH
Q 012448          287 DSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSI  333 (463)
Q Consensus       287 ~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~  333 (463)
                      .-     +.....+|.++..++.++++.+..++.+|++++|.|+...
T Consensus       166 ~~-----~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          166 PT-----ALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             GG-----GCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CC-----CccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence            10     0012346667777777888999999999999999998744

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.65  E-value=0.00024  Score=68.26  Aligned_cols=115  Identities=11%  Similarity=0.151  Sum_probs=91.0

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccch---hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHH
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASL---IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS  116 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l---~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~  116 (463)
                      .+|.|+..+.+..  +..++.+..+|..++....+...   .+.+.+.|..+|+|+++.||+.++..+++++++......
T Consensus       105 llp~ll~~l~dkk--~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~  182 (249)
T 2qk1_A          105 VFTPLLDRTKEKK--PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYS  182 (249)
T ss_dssp             HHHHHHHGGGCCC--HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSH
T ss_pred             HHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcch
Confidence            4889999999876  66778888899999876654321   446788999999999999999999999999987632101


Q ss_pred             HHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC
Q 012448          117 CALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP  157 (463)
Q Consensus       117 ~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~  157 (463)
                       ...-.....++|.+..++.|.+.+|...|..+|..+++.-
T Consensus       183 -~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v  222 (249)
T 2qk1_A          183 -TLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF  222 (249)
T ss_dssp             -HHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence             1112233589999999999999999999999999987653

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.57  E-value=0.0079  Score=67.85  Aligned_cols=349  Identities=7%  Similarity=0.029  Sum_probs=189.3

Q ss_pred             hHHHHHHHHHHHhccccccchhhchHHHHHHhhcC-----CCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHH
Q 012448           57 LEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTA-----DSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLL  131 (463)
Q Consensus        57 ~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h-----~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~l  131 (463)
                      ++..+.++|..+.... +..+.+.+.+++...|.+     ++-..|+.++..++.+++.....   ....+.  .+++ +
T Consensus       437 ~R~~~~~~l~~~~~~~-~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~---~~~~l~--~l~~-~  509 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVL-NDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGE---EKRQIP--RLMR-V  509 (971)
T ss_dssp             HHHHHHHHHHHHHTTC-TTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC---------CHHH--HHHH-H
T ss_pred             HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChh---hhHHHH--HHHH-H
Confidence            4566777887775533 466777788888888876     68889999999999998765211   111111  1344 3


Q ss_pred             HHhhc--CCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHh
Q 012448          132 LDCLI--NGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFK  209 (463)
Q Consensus       132 i~~l~--d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~  209 (463)
                      +..+.  |++..|...|+.++.++++.-..-.. +-+.+++  .|-+.+ +  ..|+.+++..+..+++...+.+.-.. 
T Consensus       510 l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l~~vl~--~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~-  582 (971)
T 2x1g_F          510 LAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YIPPAIN--LLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA-  582 (971)
T ss_dssp             HHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHH--HHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH-
T ss_pred             HHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHH--HHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH-
Confidence            34455  56889999999999998754211000 1112223  333333 2  67899999999999987665544322 


Q ss_pred             hccHHHHHhhcCCC-CcHHHHHhHHHHHHHHHhh---HHHHHHHHh--cchHHHHHHHhcccccchhhhhhhhhHhhhh-
Q 012448          210 ANLLTLLEEGVSKK-NDTLETLSILELLYELAEI---QHSAEFLSR--TTLLQLLCSLIGNSATETILRSRAIMISGRL-  282 (463)
Q Consensus       210 sgl~~~ll~eL~~~-~DvLv~lnalell~eLa~t---~~g~~~L~~--~gi~~~L~~~i~~~~~dpl~r~~aili~g~i-  282 (463)
                      .++++.+...+... -|.-.+..+++.+..++..   .+-..|+.+  .-++.++...+.+...++-.+...+-..+.+ 
T Consensus       583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~  662 (971)
T 2x1g_F          583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS  662 (971)
T ss_dssp             HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence            25666666666552 3667899999999999873   344455543  2334444444333221221111111111111 


Q ss_pred             ---ccccccc------hhcchh---hhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHH
Q 012448          283 ---LSKDDSH------MFIDES---SAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHV  350 (463)
Q Consensus       283 ---~~f~~~~------~~~~~~---~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~  350 (463)
                         ...+...      .|..++   .....-+++..+++. ...|+.+.+.|.+.+|.+..+. |+.     ..+-+..+
T Consensus       663 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~v~e~~~~~~~~~~~~~-~~~-----~~p~l~~~  735 (971)
T 2x1g_F          663 TLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM-WVEEIDVLEAACSAMKHAITNL-RSS-----FQPMLQDL  735 (971)
T ss_dssp             HHHHHHTC-------------CCHHHHHTTHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHH-HC-------CTHHHHH
T ss_pred             HHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHhh-hhh-----ccccHHHH
Confidence               1100000      000011   112222333334432 2346788999999999876543 332     23445666


Q ss_pred             HHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-c-------CCHH
Q 012448          351 IDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-Q-------QAAE  422 (463)
Q Consensus       351 l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-q-------pF~e  422 (463)
                      +..+.....+..-..++..++.+...-+.+      .+....+..+. +.+..        .++.+. +       ..||
T Consensus       736 ~~~l~~~~~~~~~~~~l~l~~~~i~~~~~~------~~~~~~l~~~~-~~~~~--------~~~~~l~~~~~~~~~~~pd  800 (971)
T 2x1g_F          736 CLFIVASFQTRCCAPTLEISKTAIVMFFKD------EGCKPLMQQLL-REFIQ--------HSFKLFESTPEQNFSNISD  800 (971)
T ss_dssp             HHHHHHHCC--CCHHHHHHHHHHHTTCCC-----------HHHHHHH-HHHHH--------HHHHHHTSCTTTHHHHTHH
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHhCCC------cchHHHHHHHH-HHHHH--------HHHHHHhcccccCCccCch
Confidence            666655555433345777777777743221      11111233333 43322        222222 2       3899


Q ss_pred             HHHHHHHHHHHhhcCchhH
Q 012448          423 IRLAGYRMITGLVARPWCL  441 (463)
Q Consensus       423 lr~A~~~~l~~l~~~~Wg~  441 (463)
                      ++.+.|+++..+..+-|..
T Consensus       801 ~~~~~f~ll~~~l~~~p~~  819 (971)
T 2x1g_F          801 TMETFFGCLTQIIKKIPQV  819 (971)
T ss_dssp             HHHHHHHHHHHHHHSSGGG
T ss_pred             HHHHHHHHHHHHHHhCcHH
Confidence            9999999999999887763

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.46  E-value=9.6e-06  Score=69.66  Aligned_cols=122  Identities=11%  Similarity=0.073  Sum_probs=81.9

Q ss_pred             hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCC
Q 012448           77 LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGF  156 (463)
Q Consensus        77 l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~  156 (463)
                      ..+.+.+.+...|+++++.||..+++.++++   .   ..         . ++.++.++.|++..|...|+.+|..++. 
T Consensus         9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~---~---~~---------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~-   71 (131)
T 1te4_A            9 HHSSGLVPRGSHMADENKWVRRDVSTALSRM---G---DE---------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD-   71 (131)
T ss_dssp             ------------CCSSCCCSSSSCCSSTTSC---S---ST---------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS-
T ss_pred             cccccHHHHHHHhcCCCHHHHHHHHHHHHHh---C---ch---------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC-
Confidence            3445677888889999999999998888763   2   11         1 4777788889999999999988887752 


Q ss_pred             CCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHH
Q 012448          157 PNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELL  236 (463)
Q Consensus       157 ~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell  236 (463)
                               +..++  .|.+.+.+.+..||..+...+.++..           ...++.++..+++ +|..||..+++-|
T Consensus        72 ---------~~a~~--~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d-~~~~vr~~A~~aL  128 (131)
T 1te4_A           72 ---------ERAVE--PLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAET-GTGFARKVAVNYL  128 (131)
T ss_dssp             ---------HHHHH--HHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTS-CCTHHHHHHHHHG
T ss_pred             ---------HHHHH--HHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhC-CCHHHHHHHHHHH
Confidence                     23344  56667778888999998888888752           2346667777778 8888998888766


Q ss_pred             HH
Q 012448          237 YE  238 (463)
Q Consensus       237 ~e  238 (463)
                      .+
T Consensus       129 ~~  130 (131)
T 1te4_A          129 ET  130 (131)
T ss_dssp             GG
T ss_pred             Hh
Confidence            43

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.33  E-value=3.8e-05  Score=65.89  Aligned_cols=118  Identities=11%  Similarity=0.158  Sum_probs=80.9

Q ss_pred             CChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448           39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA  118 (463)
Q Consensus        39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~  118 (463)
                      .+.+.|...|++.+  +..+..+...|.++     +..   . .+.|...|+++++.||..+++.++++-  .   .   
T Consensus        12 ~~~~~l~~~L~~~~--~~vR~~A~~~L~~~-----~~~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~--~---~---   72 (131)
T 1te4_A           12 SGLVPRGSHMADEN--KWVRRDVSTALSRM-----GDE---A-FEPLLESLSNEDWRIRGAAAWIIGNFQ--D---E---   72 (131)
T ss_dssp             ---------CCSSC--CCSSSSCCSSTTSC-----SST---T-HHHHHHGGGCSCHHHHHHHHHHHGGGC--S---H---
T ss_pred             ccHHHHHHHhcCCC--HHHHHHHHHHHHHh-----Cch---H-HHHHHHHHcCCCHHHHHHHHHHHHhcC--C---H---
Confidence            46778888898765  66666666666544     111   1 488899999999999999999999852  1   1   


Q ss_pred             HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHH
Q 012448          119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIV  194 (463)
Q Consensus       119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v  194 (463)
                             +.++.++.++.|++..|...|+.+|.+++.          +..++  .|.+.+...+..||..+...+.
T Consensus        73 -------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~--~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A           73 -------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRA--AMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             -------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHH--HHHHHTTSCCTHHHHHHHHHGG
T ss_pred             -------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHH--HHHHHHhCCCHHHHHHHHHHHH
Confidence                   246778888999999999999999999862          23444  6666777788888888776654

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.30  E-value=0.003  Score=63.23  Aligned_cols=182  Identities=15%  Similarity=0.127  Sum_probs=146.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448           82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID  161 (463)
Q Consensus        82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~  161 (463)
                      ...+...|.+.+...++-++..+.+++..+   .. .++-+++.+=+..|+..+.+.+-..=.-++.+|..+-.|..|+.
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D---~~-Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~  195 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQED---KD-LVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGML  195 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTC---TT-HHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcc---hH-HHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccccc
Confidence            556678888899999999999999987654   45 88889999989999999999999999999999999999998995


Q ss_pred             ccc-cCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhcc----------HHHHHhhcC---CCCcHH
Q 012448          162 IIF-PADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANL----------LTLLEEGVS---KKNDTL  227 (463)
Q Consensus       162 ~l~-~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl----------~~~ll~eL~---~~~DvL  227 (463)
                      -++ .+.++.  .+-.++...+..|-.++++++..+...|+..+..+.++==          ++.++.-|.   + .|.-
T Consensus       196 gvvs~~~fI~--~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~-~D~e  272 (339)
T 3dad_A          196 GVVAHSDTIQ--WLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNG-ADPE  272 (339)
T ss_dssp             HHHHCHHHHH--HHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTS-CCHH
T ss_pred             chhCCHHHHH--HHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCC-CCHH
Confidence            444 666666  7777777788888889999999998888766665544322          667777775   5 8999


Q ss_pred             HHHhHHHHHHHHHh-hH------HHHHHHHhcchHHHHHHHhcccccchh
Q 012448          228 ETLSILELLYELAE-IQ------HSAEFLSRTTLLQLLCSLIGNSATETI  270 (463)
Q Consensus       228 v~lnalell~eLa~-t~------~g~~~L~~~gi~~~L~~~i~~~~~dpl  270 (463)
                      ++.|++.++-.+-. .+      +-...|.+.|+-+.+...+....+||-
T Consensus       273 lq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~  322 (339)
T 3dad_A          273 LLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVD  322 (339)
T ss_dssp             HHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHH
T ss_pred             HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHH
Confidence            99999999998766 23      455677888887777777777767764

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.21  E-value=0.048  Score=55.17  Aligned_cols=272  Identities=11%  Similarity=0.079  Sum_probs=153.9

Q ss_pred             HHHHHHHHHHHhccccccc-----hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHH
Q 012448           58 EDTLVVCLERIFKTKYGAS-----LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLL  132 (463)
Q Consensus        58 ~~~~~~vL~~il~~~~~~~-----l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li  132 (463)
                      ...+...+.+++-....++     ....+...+..++.++|..+|+++--.+..+.+..   +. .. +     +...+.
T Consensus        41 ~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~---~e-~i-L-----v~Nsl~  110 (355)
T 3tjz_B           41 PRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA---ED-VI-I-----VTSSLT  110 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS---SC-GG-G-----GHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH---HH-HH-H-----HHHHHH
Confidence            4445555555543222222     23345677789999999999999988887766543   11 11 2     233455


Q ss_pred             HhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhcc
Q 012448          133 DCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANL  212 (463)
Q Consensus       133 ~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl  212 (463)
                      .=+++++.-+..-|+.+|.+|.... -++     ...+  .+++.+.+.++.||.-+.=++.++....+|..+     ++
T Consensus       111 kDl~~~N~~iR~lALRtL~~I~~~~-m~~-----~l~~--~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~  177 (355)
T 3tjz_B          111 KDMTGKEDSYRGPAVRALCQITDST-MLQ-----AIER--YMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RW  177 (355)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHCCTT-THH-----HHHH--HHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TT
T ss_pred             hhcCCCcHhHHHHHHHHHhcCCCHH-HHH-----HHHH--HHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HH
Confidence            7789999999999999999996332 112     2333  778788899999999999999999999998753     68


Q ss_pred             HHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhccc-ccchhhhhhhhhHhhhhccccccchh
Q 012448          213 LTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNS-ATETILRSRAIMISGRLLSKDDSHMF  291 (463)
Q Consensus       213 ~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~-~~dpl~r~~aili~g~i~~f~~~~~~  291 (463)
                      ++.+-..+.+ ++..|+.||+-++.++.+....        .+.+|+..+.+. -.+|+....-+-+.+.+.+       
T Consensus       178 ~~~l~~ll~d-~n~~V~~~Al~lL~ei~~~d~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~-------  241 (355)
T 3tjz_B          178 VNEAQEAASS-DNIMVQYHALGLLYHVRKNDRL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLE-------  241 (355)
T ss_dssp             HHHHHHHTTC-SSHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------
T ss_pred             HHHHHHHhcC-CCccHHHHHHHHHHHHHhhchH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcc-------
Confidence            8888888888 9999999999999999984211        233444444443 2478743111111112221       


Q ss_pred             cchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhH
Q 012448          292 IDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLA  371 (463)
Q Consensus       292 ~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~  371 (463)
                      -|.+  ..-..+++.+...++...+.+.-.|+.|+=.+.+...  ..+...     ..++..+...-.+..|..+|+.+.
T Consensus       242 ~d~~--~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~--~~~~~a-----~~~L~~fLss~d~niryvaLr~L~  312 (355)
T 3tjz_B          242 DEDG--SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA--KELAPA-----VSVLQLFCSSPKAALRYAAVRTLN  312 (355)
T ss_dssp             -----------------CCCCCSSHHHHHHHHHHHTC-------------C-----CCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred             ccch--hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH--HHHHHH-----HHHHHHHHcCCCchHHHHHHHHHH
Confidence            1101  1112344545455666666666566666655433221  222221     223333333222233888898888


Q ss_pred             HHhcCC
Q 012448          372 NIAGKT  377 (463)
Q Consensus       372 ~Il~~~  377 (463)
                      .|....
T Consensus       313 ~l~~~~  318 (355)
T 3tjz_B          313 KVAMKH  318 (355)
T ss_dssp             ------
T ss_pred             HHHHHC
Confidence            888754

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.21  E-value=0.00093  Score=73.26  Aligned_cols=191  Identities=12%  Similarity=0.048  Sum_probs=131.5

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc--hhhch-HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHH
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS--LIPHY-MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS  116 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~--l~~~~-~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~  116 (463)
                      .+.+++..|++.+  +..+..+|..|..+....+...  +.++. ...|...|.+++..||+-|+++++.+..+.+  ..
T Consensus        35 ~i~Pll~~L~S~~--~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g--~d  110 (684)
T 4gmo_A           35 KILPVLKDLKSPD--AKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE--AD  110 (684)
T ss_dssp             TTHHHHHHHSSSC--CSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC--HH
T ss_pred             hHHHHHHHcCCCC--HHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC--ch
Confidence            4445667898766  8889999999999864322222  33344 4557788999999999999999999987653  34


Q ss_pred             HHHHHhhccCcHHHHHHhhcCCch---------------------HHHHHHHHHHHHHhCCCC-CccccccCCCcchhhH
Q 012448          117 CALQLLIDYEIYPLLLDCLINGNE---------------------EVATASMDAIKKLAGFPN-GIDIIFPADNKAATDL  174 (463)
Q Consensus       117 ~~~~~~~~~~l~~~li~~l~d~d~---------------------~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L  174 (463)
                       ++..+.+.++++.|...+.....                     .++..++.+|..++.++. .++.++..+.++  .|
T Consensus       111 -~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~--~l  187 (684)
T 4gmo_A          111 -FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTIL--RL  187 (684)
T ss_dssp             -HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHH--HH
T ss_pred             -HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHH--HH
Confidence             67777888999999877653222                     244557778888887665 345666666666  55


Q ss_pred             hhHhhcCC---chhHHHHHHHHHHHHhcCHHHHHHHHhhcc---HHHHHhhcCCCCcHHHHHhHHHHHHHH
Q 012448          175 GNLVAQCS---SLGRVRVLSLIVKLFSVSRSVASVIFKANL---LTLLEEGVSKKNDTLETLSILELLYEL  239 (463)
Q Consensus       175 ~~~~~~~~---~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl---~~~ll~eL~~~~DvLv~lnalell~eL  239 (463)
                      ...+.+.+   ..++.-+.+++..++.-+.+..+.+.+.|.   +..++..-++ +|.+-.+ +.-++..+
T Consensus       188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~l-a~giL~Ni  256 (684)
T 4gmo_A          188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVM-ACGVLHNV  256 (684)
T ss_dssp             HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHH-HHHHHHHH
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHH-HHHHHHhH
Confidence            54554433   468999999999999999999999988774   3444444444 5554333 33444433

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.85  E-value=0.0083  Score=58.38  Aligned_cols=111  Identities=6%  Similarity=0.067  Sum_probs=85.6

Q ss_pred             CCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHH
Q 012448           26 VQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVT  105 (463)
Q Consensus        26 ~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~  105 (463)
                      ..++.++..|     +|.|+.-|.++.  ...++.+..+|+.+...    .-.+.+.+++..|++|-|..+|+-++..++
T Consensus       124 ~~~~~ea~~~-----lP~LveKlGd~k--~~vR~~~r~il~~l~~v----~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~  192 (266)
T 2of3_A          124 PMSQEEVSAF-----VPYLLLKTGEAK--DNMRTSVRDIVNVLSDV----VGPLKMTPMLLDALKSKNARQRSECLLVIE  192 (266)
T ss_dssp             CCCHHHHHHH-----HHHHHHGGGCSS--HHHHHHHHHHHHHHHHH----HCHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             cchHHHHHHH-----HHHHHHHhCCCh--HHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            4566666665     488999998765  55788888888776432    233346788889999999999999999999


Q ss_pred             HHHhCCchhHHHHHHHhhccCcH---HHHHHhhcCCchHHHHHHHHHHHHHhCC
Q 012448          106 CLLEDSDLEASCALQLLIDYEIY---PLLLDCLINGNEEVATASMDAIKKLAGF  156 (463)
Q Consensus       106 ~i~~~~~~~~~~~~~~~~~~~l~---~~li~~l~d~d~~va~~A~~~L~~lak~  156 (463)
                      .+++..+     ..    ....+   +.|..++.|+|.+|...|++++..+-++
T Consensus       193 ~li~~~G-----~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~  237 (266)
T 2of3_A          193 YYITNAG-----IS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF  237 (266)
T ss_dssp             HHHHHHC-----SG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcC-----CC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            9997542     11    12356   9999999999999999999999987555

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.83  E-value=0.28  Score=55.35  Aligned_cols=310  Identities=9%  Similarity=0.094  Sum_probs=161.8

Q ss_pred             HHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhC
Q 012448           31 AAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLED  110 (463)
Q Consensus        31 ~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~  110 (463)
                      +.++.+.+.    |+.+|.+.+  +..+.+++.++..+...-.|. --|.+.+.|...++.+++..++.++..+..+.++
T Consensus        81 ~~k~~ik~~----ll~~l~~~~--~~ir~~l~~~ia~ia~~d~p~-~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~  153 (960)
T 1wa5_C           81 NNVELIKKE----IVPLMISLP--NNLQVQIGEAISSIADSDFPD-RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKR  153 (960)
T ss_dssp             HHHHHHHHH----HHHHHHHSC--HHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHH----HHHHHHhCC--HHHHHHHHHHHHHHHHhhCcc-chhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            344444444    344444443  678899999999997665563 3477899999999999999999999999999874


Q ss_pred             Cc---hhHH---HHHHHhhcc-----CcHHHHHHhhcCCch---------HHHHHHHHHHHHHhCCCCCccccccCCCcc
Q 012448          111 SD---LEAS---CALQLLIDY-----EIYPLLLDCLINGNE---------EVATASMDAIKKLAGFPNGIDIIFPADNKA  170 (463)
Q Consensus       111 ~~---~~~~---~~~~~~~~~-----~l~~~li~~l~d~d~---------~va~~A~~~L~~lak~~~~l~~l~~~~~~~  170 (463)
                      ..   .+..   ++...+...     .++..+..++.+++.         ++...+++++..+..+.  +...+......
T Consensus       154 ~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~--~~~~~~~~~~~  231 (960)
T 1wa5_C          154 WRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQD--IPEFFEDNIQV  231 (960)
T ss_dssp             GTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSC--CCHHHHHTHHH
T ss_pred             HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHH
Confidence            32   0011   011111111     223334455766532         23344666666554321  11011111100


Q ss_pred             -hhhHhhHhhc------CC---------chhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcC----CCCcHHHHH
Q 012448          171 -ATDLGNLVAQ------CS---------SLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVS----KKNDTLETL  230 (463)
Q Consensus       171 -~~~L~~~~~~------~~---------~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~----~~~DvLv~l  230 (463)
                       -..+.+.+..      .+         ..+|..+|++++.++..-++.+..... .+++..+..+.    ...+.-+..
T Consensus       232 ~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~  310 (960)
T 1wa5_C          232 GMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVS  310 (960)
T ss_dssp             HHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHH
T ss_pred             HHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHH
Confidence             0011212211      11         257888999999999888777754332 56666666553    124556778


Q ss_pred             hHHHHHHHHHhhHHHHHHHHhcchHHHHHH-HhcccccchhhhhhhhhHhhhhcc-ccccchhcchhhhhhhHHHHHHHh
Q 012448          231 SILELLYELAEIQHSAEFLSRTTLLQLLCS-LIGNSATETILRSRAIMISGRLLS-KDDSHMFIDESSAKTVISAIDGRL  308 (463)
Q Consensus       231 nalell~eLa~t~~g~~~L~~~gi~~~L~~-~i~~~~~dpl~r~~aili~g~i~~-f~~~~~~~~~~~~k~~p~~l~~~f  308 (463)
                      .+++.++.+++.+...+.+.....+..|++ .+.                -+|.. -...-.|-+.|     -.++..-.
T Consensus       311 ~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~----------------~~m~~~~~d~e~w~~dp-----~e~i~~d~  369 (960)
T 1wa5_C          311 KSLSFLTAVTRIPKYFEIFNNESAMNNITEQIIL----------------PNVTLREEDVELFEDDP-----IEYIRRDL  369 (960)
T ss_dssp             HHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHH----------------HHHSCCGGGTTTTTTCH-----HHHHHHHH
T ss_pred             HHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhH----------------HhcCCCHHHHHHHhcCH-----HHHHHhcc
Confidence            899999999886654443322244444442 211                11111 01111221111     11222221


Q ss_pred             ccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccch--hhHhHHhhhHHHhc
Q 012448          309 GFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHG--KQLAALHGLANIAG  375 (463)
Q Consensus       309 ~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~--~k~r~L~al~~Il~  375 (463)
                      +  .+...+.+.+|.+.|..++..-. +.++..- -+.+...+..+.......  .|-.|+.+++.|..
T Consensus       370 e--~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~-l~~i~~~l~~~~~~~~~~w~~reaal~algaia~  434 (960)
T 1wa5_C          370 E--GSDTDTRRRACTDFLKELKEKNE-VLVTNIF-LAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAI  434 (960)
T ss_dssp             H--C----CHHHHHHHHHHHHHHHCH-HHHHHHH-HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHB
T ss_pred             C--cccccCcHHHHHHHHHHHHHHcc-hhHHHHH-HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHH
Confidence            2  23335788899999988887543 4444321 112233333332211111  27789999999975

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=96.73  E-value=0.032  Score=51.62  Aligned_cols=141  Identities=11%  Similarity=0.138  Sum_probs=106.9

Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC
Q 012448           80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG  159 (463)
Q Consensus        80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~  159 (463)
                      .+.+.+-.-+.--+|..|.=....+++|++.+   +. +..     +++.-+...+.++|..=...|.+.++.++...  
T Consensus       107 ~vVp~lfanyrigd~kikIn~~yaLeeIaran---P~-l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~--  175 (253)
T 2db0_A          107 SMIPVLFANYRIGDEKTKINVSYALEEIAKAN---PM-LMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS--  175 (253)
T ss_dssp             HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC---HH-HHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT--
T ss_pred             hhHHHHHHHHhcCCccceecHHHHHHHHHHhC---hH-HHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC--
Confidence            34666667777779999998888899988877   44 332     35556677888999888899999999888654  


Q ss_pred             ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHH
Q 012448          160 IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYEL  239 (463)
Q Consensus       160 l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eL  239 (463)
                      .+.+.  +.++  .|..++-..|++||..+.|.++++|..++.. .     .++...+.|++| .--||+..+-|=|..+
T Consensus       176 ~~yv~--PfLp--rL~aLL~D~deiVRaSaVEtL~~lA~~npkl-R-----kii~~kl~e~~D-~S~lv~~~V~egL~rl  244 (253)
T 2db0_A          176 FKYVN--PFLP--RIINLLHDGDEIVRASAVEALVHLATLNDKL-R-----KVVIKRLEELND-TSSLVNKTVKEGISRL  244 (253)
T ss_dssp             HHHHG--GGHH--HHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH-H-----HHHHHHHHHCCC-SCHHHHHHHHHHHHHH
T ss_pred             ccccC--cchH--HHHHHHcCcchhhhHHHHHHHHHHHHcCHHH-H-----HHHHHHHHHhcC-cHHHHHHHHHHHHHHH
Confidence            34333  3566  6666888899999999999999999999974 3     245567889999 7778888888888777


Q ss_pred             Hhh
Q 012448          240 AEI  242 (463)
Q Consensus       240 a~t  242 (463)
                      +--
T Consensus       245 ~l~  247 (253)
T 2db0_A          245 LLL  247 (253)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            653

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=96.72  E-value=0.011  Score=67.82  Aligned_cols=139  Identities=12%  Similarity=-0.053  Sum_probs=93.0

Q ss_pred             cchHHHHHHHHHHHhcccccc---chhhchHHHHHHhhcC-----CCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccC
Q 012448           55 PGLEDTLVVCLERIFKTKYGA---SLIPHYMPFVQVGLTA-----DSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYE  126 (463)
Q Consensus        55 ~~~~~~~~~vL~~il~~~~~~---~l~~~~~~~l~~gL~h-----~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~  126 (463)
                      -..+|.++.+++.+.+...+.   ...+++.++|..-++|     +.+.||.-++|.+||..+=-..... ..+     .
T Consensus       467 W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~L~-----~  540 (1023)
T 4hat_C          467 WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FLR-----T  540 (1023)
T ss_dssp             HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-HHH-----H
T ss_pred             HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-HHH-----H
Confidence            457899999999998766543   3567788888887775     6778999999999996441100011 111     2


Q ss_pred             cHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcccccc------CCCcc--hhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448          127 IYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFP------ADNKA--ATDLGNLVAQCSSLGRVRVLSLIVKLFS  198 (463)
Q Consensus       127 l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~------~~~~~--~~~L~~~~~~~~~~vR~Rv~el~v~ia~  198 (463)
                      ++..++..+.++...|+..|..++.+|+..-.  +.+..      .+.++  -+.+.+....-+..-+.++|+.+..+.+
T Consensus       541 vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~--~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~  618 (1023)
T 4hat_C          541 VILKLFEFMHETHEGVQDMACDTFIKIVQKCK--YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1023)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT--HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH--HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            45556678888888999999999999986421  11111      01111  0123334445677888999999999999


Q ss_pred             cCH
Q 012448          199 VSR  201 (463)
Q Consensus       199 ~S~  201 (463)
                      ..+
T Consensus       619 ~~~  621 (1023)
T 4hat_C          619 EER  621 (1023)
T ss_dssp             TCC
T ss_pred             hCC
Confidence            865

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=96.62  E-value=0.14  Score=57.32  Aligned_cols=172  Identities=14%  Similarity=0.087  Sum_probs=106.5

Q ss_pred             hHHHHHHHHHHHhccccccchhhchHHHHHHhh----cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHH
Q 012448           57 LEDTLVVCLERIFKTKYGASLIPHYMPFVQVGL----TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLL  132 (463)
Q Consensus        57 ~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL----~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li  132 (463)
                      ++..+.++|+.+-.. .+..+.+.+.+.+...+    .+++...|+.++.++|.+++.......+...     .+++ ++
T Consensus       423 ~r~~~~~~L~~~~~~-~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~-----~l~~-~l  495 (963)
T 2x19_B          423 YRVDISDTLMYVYEM-LGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVP-----GLIG-LI  495 (963)
T ss_dssp             HHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH-----HHHH-HG
T ss_pred             HHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHH-----HHHH-HH
Confidence            345566677766432 34556677788888888    7788999999999999999865221100111     1223 22


Q ss_pred             HhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhcc
Q 012448          133 DCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANL  212 (463)
Q Consensus       133 ~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl  212 (463)
                      ..+.++...|...++.++.++++.-..-.. +-+.+++  .|-+.+  .+..|+.+++..+.+++....+.+.-.. .++
T Consensus       496 ~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l~~vl~--~l~~~l--~~~~V~~~A~~al~~l~~~~~~~l~p~~-~~i  569 (963)
T 2x19_B          496 PRISISNVQLADTVMFTIGALSEWLADHPV-MINSVLP--LVLHAL--GNPELSVSSVSTLKKICRECKYDLPPYA-ANI  569 (963)
T ss_dssp             GGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HHTTTHH--HHHHHT--TCGGGHHHHHHHHHHHHHHTGGGCTTTH-HHH
T ss_pred             HhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HHHHHHH--HHHHHh--CCchHHHHHHHHHHHHHHHHHHHHHhhH-HHH
Confidence            355666788999999999988754210001 1123444  444333  2478999999999999975543322111 245


Q ss_pred             HHHHHhhcCCC-CcHHHHHhHHHHHHHHHh
Q 012448          213 LTLLEEGVSKK-NDTLETLSILELLYELAE  241 (463)
Q Consensus       213 ~~~ll~eL~~~-~DvLv~lnalell~eLa~  241 (463)
                      ++.+...+... -+.-.+..++|.+..++.
T Consensus       570 l~~l~~~l~~~~~~~~~~~~~~eai~~i~~  599 (963)
T 2x19_B          570 VAVSQDVLMKQIHKTSQCMWLMQALGFLLS  599 (963)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence            55555545431 255678888999999887

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=96.51  E-value=0.031  Score=53.39  Aligned_cols=177  Identities=12%  Similarity=0.031  Sum_probs=123.2

Q ss_pred             hHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh----hHHHHHH
Q 012448          173 DLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE----IQHSAEF  248 (463)
Q Consensus       173 ~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~----t~~g~~~  248 (463)
                      .|..++...|+++|.|++.++-++-|.=++.+....=..+|+.++.-+++ +|.=+.+.|+.++.-|-+    ++..+. 
T Consensus        37 ~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL~~~~y~-  114 (265)
T 3b2a_A           37 LILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPMGSKTFL-  114 (265)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCBCHHHHH-
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCCCHHHHH-
Confidence            56667788999999999999999998855666665566899999999999 999999999999999988    333332 


Q ss_pred             HHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHh
Q 012448          249 LSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQ  328 (463)
Q Consensus       249 L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~  328 (463)
                          -+...|.+.+.  +.++..        ..+.+  +.+.-. ++... +|..++.+|+.+.|.|...+.+|+-+|=.
T Consensus       115 ----Kl~~aL~dlik--~~~~il--------~~eaa--e~Lgkl-kv~~~-~~~V~~~l~sLl~Skd~~vK~agl~~L~e  176 (265)
T 3b2a_A          115 ----KAAKTLVSLLE--SPDDMM--------RIETI--DVLSKL-QPLED-SKLVRTYINELVVSPDLYTKVAGFCLFLN  176 (265)
T ss_dssp             ----HHHHHHHHHTT--SCCHHH--------HHHHH--HHHHHC-CBSCC-CHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHhc--CCCchH--------HHHHH--HHhCcC-Ccccc-hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence                23455666666  345542        34444  111001 11222 66778888888999999999999999999


Q ss_pred             hcCCHHHHHHHhhcCchhHHHHHHHHHhhccc-hh--hHhHHhhhHHHhcCC
Q 012448          329 IGSSIQGATLLLLCLPPAARHVIDAAFDRQGH-GK--QLAALHGLANIAGKT  377 (463)
Q Consensus       329 Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~-~~--k~r~L~al~~Il~~~  377 (463)
                      |++.++-+..+.        .++.-+-....+ .+  +-+||+++..|++.+
T Consensus       177 ia~~S~D~~i~~--------~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          177 MLNSSADSGHLT--------LILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             HGGGCSSCCCGG--------GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             hhcccCCHHHHH--------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            998554333332        222222222222 23  788999999999865

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.51  E-value=0.027  Score=63.61  Aligned_cols=218  Identities=13%  Similarity=-0.015  Sum_probs=130.9

Q ss_pred             HHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCc
Q 012448           60 TLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGN  139 (463)
Q Consensus        60 ~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d  139 (463)
                      .++.-|..+    ..++-.+.+.+.|...|.+.++.+++.++-++|-+--.+.+..  +.+.+     +..   +..+.+
T Consensus       456 gAaLGLGla----~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~--ai~~L-----L~~---~~e~~~  521 (963)
T 4ady_A          456 GASLGIGLA----AMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE--AIHDM-----FTY---SQETQH  521 (963)
T ss_dssp             HHHHHHHHH----STTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH--HHHHH-----HHH---HHHCSC
T ss_pred             HHHHHHHHH----hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH--HHHHH-----HHH---HhccCc
Confidence            444455554    2233344567888888999999999999999998854333322  22221     111   334567


Q ss_pred             hHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHh-hcCCchhHHHHHHHH--HHHHhcCHHHHHHHHhhccHHHH
Q 012448          140 EEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLV-AQCSSLGRVRVLSLI--VKLFSVSRSVASVIFKANLLTLL  216 (463)
Q Consensus       140 ~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~-~~~~~~vR~Rv~el~--v~ia~~S~~~~~~v~~sgl~~~l  216 (463)
                      ..+.+.|+-.|.-+.-..+        ...+  .+.+.+ ...++.+|+-..-.+  +....-++...+     .++..+
T Consensus       522 e~vrR~aalgLGll~~g~~--------e~~~--~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq-----~LL~~~  586 (963)
T 4ady_A          522 GNITRGLAVGLALINYGRQ--------ELAD--DLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK-----RLLHVA  586 (963)
T ss_dssp             HHHHHHHHHHHHHHTTTCG--------GGGH--HHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHH-----HHHHHH
T ss_pred             HHHHHHHHHHHHhhhCCCh--------HHHH--HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHH-----HHHHHh
Confidence            7899999999987743332        2222  332233 357788887643322  222333443322     233333


Q ss_pred             HhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhh
Q 012448          217 EEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESS  296 (463)
Q Consensus       217 l~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~  296 (463)
                      ..   + .+.-||-.|+.-|.-++-..        ...+.++++.+.+ ..||.+|.-+.+..|.+.+. +         
T Consensus       587 ~~---d-~~d~VRraAViaLGlI~~g~--------~e~v~rlv~~L~~-~~d~~VR~gAalALGli~aG-n---------  643 (963)
T 4ady_A          587 VS---D-SNDDVRRAAVIALGFVLLRD--------YTTVPRIVQLLSK-SHNAHVRCGTAFALGIACAG-K---------  643 (963)
T ss_dssp             HH---C-SCHHHHHHHHHHHHHHTSSS--------CSSHHHHTTTGGG-CSCHHHHHHHHHHHHHHTSS-S---------
T ss_pred             cc---C-CcHHHHHHHHHHHHhhccCC--------HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhccC-C---------
Confidence            32   3 34446877777776665422        1345666665554 46899998888999988762 1         


Q ss_pred             hhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448          297 AKTVISAIDGRLGFLQSQDSDECESALEALGQIGS  331 (463)
Q Consensus       297 ~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs  331 (463)
                        +.+..++.+-.+....|+..+..|+-+||.||.
T Consensus       644 --~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          644 --GLQSAIDVLDPLTKDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             --CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred             --CcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence              122233333345678899999999999999997

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=96.45  E-value=0.026  Score=53.96  Aligned_cols=184  Identities=14%  Similarity=0.140  Sum_probs=140.0

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHH
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS  116 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~  116 (463)
                      .+..|+..|.+.|  +..+..+-.+|+.+++..++.   ...+++.+-+..-+.+.|..|.-=|++.+++++++..-+..
T Consensus        34 ~l~~L~~LL~dkD--~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           34 ALFLILELAGEDD--ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHTTSSC--HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             HHHHHHHHHhccc--hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            5778888898766  788888888999998875443   45677899999999999999999999999999998753333


Q ss_pred             HHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448          117 CALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL  196 (463)
Q Consensus       117 ~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i  196 (463)
                       ....     +...+.+.+.+++.-+-..|+..|..+ +-.     -..+.+..  .+-.++.++|-.+|-=.+.++.+|
T Consensus       112 -~y~K-----l~~aL~dlik~~~~il~~eaae~Lgkl-kv~-----~~~~~V~~--~l~sLl~Skd~~vK~agl~~L~ei  177 (265)
T 3b2a_A          112 -TFLK-----AAKTLVSLLESPDDMMRIETIDVLSKL-QPL-----EDSKLVRT--YINELVVSPDLYTKVAGFCLFLNM  177 (265)
T ss_dssp             -HHHH-----HHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS-----CCCHHHHH--HHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             -HHHH-----HHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc-----cchHHHHH--HHHHHHhCCChhHHHHHHHHHHHh
Confidence             2222     445666788899999999999999988 221     11233444  666688889999999999999999


Q ss_pred             HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhH
Q 012448          197 FSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQ  243 (463)
Q Consensus       197 a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~  243 (463)
                      ++.|.|. +.+  .++|+.+=.-|++ +|+.++--|+..+.++...|
T Consensus       178 a~~S~D~-~i~--~~I~~eI~elL~~-eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          178 LNSSADS-GHL--TLILDEIPSLLQN-DNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             GGGCSSC-CCG--GGTTTTHHHHHTC-SCHHHHHHHHHHHHHHTTSC
T ss_pred             hcccCCH-HHH--HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCc
Confidence            9999744 000  1445554445777 99999999999999988853

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=96.44  E-value=0.54  Score=52.51  Aligned_cols=172  Identities=16%  Similarity=0.153  Sum_probs=103.7

Q ss_pred             cchHHHHHHHHHHHhcccccc--chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHH
Q 012448           55 PGLEDTLVVCLERIFKTKYGA--SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLL  132 (463)
Q Consensus        55 ~~~~~~~~~vL~~il~~~~~~--~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li  132 (463)
                      -..++.++.++..+.......  ...+++.+. ..++..+++.||.-+++.+|+..+.-   .. -.+.+  ..+++.++
T Consensus       463 w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~-l~~l~~~~~~vr~~~~~~l~~~~~~l---~~-~~~~l--~~vl~~l~  535 (963)
T 2x19_B          463 WQHTEALLYGFQSIAETIDVNYSDVVPGLIGL-IPRISISNVQLADTVMFTIGALSEWL---AD-HPVMI--NSVLPLVL  535 (963)
T ss_dssp             HHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHH-GGGSCCCSHHHHHHHHHHHHHTHHHH---HH-CHHHH--TTTHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcCchhhHHHHHHHHH-HHhCCCCcHHHHHHHHHHHHHHHHHH---Hh-CHHHH--HHHHHHHH
Confidence            456788888999986544332  233444443 23566678999999999999976532   10 01111  26888999


Q ss_pred             HhhcCCchHHHHHHHHHHHHHhCCCCCccccccCC---CcchhhHhhHhhc--CCchhHHHHHHHHHHHHhcCH-HHHHH
Q 012448          133 DCLINGNEEVATASMDAIKKLAGFPNGIDIIFPAD---NKAATDLGNLVAQ--CSSLGRVRVLSLIVKLFSVSR-SVASV  206 (463)
Q Consensus       133 ~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~---~~~~~~L~~~~~~--~~~~vR~Rv~el~v~ia~~S~-~~~~~  206 (463)
                      .++.+  ..|...|..+|.++++.-+  +. +.+-   .+.  .|.+.+.+  -+...|..+|+.+..++...+ +....
T Consensus       536 ~~l~~--~~V~~~A~~al~~l~~~~~--~~-l~p~~~~il~--~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~  608 (963)
T 2x19_B          536 HALGN--PELSVSSVSTLKKICRECK--YD-LPPYAANIVA--VSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK  608 (963)
T ss_dssp             HHTTC--GGGHHHHHHHHHHHHHHTG--GG-CTTTHHHHHH--HHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHhCC--chHHHHHHHHHHHHHHHHH--HH-HHhhHHHHHH--HHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            99977  5688999999999986422  11 1111   122  33333333  356899999999999997653 33333


Q ss_pred             HHhhccHHHHHhhcC----CCCc---HHHHHhHHHHHHHHHh
Q 012448          207 IFKANLLTLLEEGVS----KKND---TLETLSILELLYELAE  241 (463)
Q Consensus       207 v~~sgl~~~ll~eL~----~~~D---vLv~lnalell~eLa~  241 (463)
                      ..+ .+++.+...+.    +..|   .......++++..+++
T Consensus       609 ~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~  649 (963)
T 2x19_B          609 NLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFT  649 (963)
T ss_dssp             HHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            222 45555444432    1112   2334467777777776

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.30  E-value=0.041  Score=52.82  Aligned_cols=191  Identities=15%  Similarity=0.151  Sum_probs=120.8

Q ss_pred             HhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccc----cc---hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 012448           36 LDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG----AS---LIPHYMPFVQVGLTADSHSVKRLACKTVTCLL  108 (463)
Q Consensus        36 ~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~----~~---l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~  108 (463)
                      .+++|+   -.-|.+.+ |+.-++.+.. |.++|.....    +.   ....+.+.+..++...|..|.+.++..+..++
T Consensus         9 ~sklpl---~e~l~sk~-WK~R~eale~-l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~   83 (278)
T 4ffb_C            9 YTTLPL---EERLTYKL-WKARLEAYKE-LNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLI   83 (278)
T ss_dssp             --CCCH---HHHTTCSS-HHHHHHHHHH-HHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             hhcCCH---HHhcccCc-HHHHHHHHHH-HHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            345664   46777766 4443444433 4444432211    11   23456788999999999999999999999988


Q ss_pred             hCCchhH--HHHHHHhhccCcHHHHH-HhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchh
Q 012448          109 EDSDLEA--SCALQLLIDYEIYPLLL-DCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLG  185 (463)
Q Consensus       109 ~~~~~~~--~~~~~~~~~~~l~~~li-~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~v  185 (463)
                      .......  .......+. .+++.++ .|++++...+...|..++..+.......+.     +++  .+...+.++|..+
T Consensus        84 ~~~~~~~~~~~~~~~~~~-~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e--~l~~~l~~Knpkv  155 (278)
T 4ffb_C           84 DAFASSSLKNAHNITLIS-TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVE--LVIPFFEKKLPKL  155 (278)
T ss_dssp             TTCC---CCHHHHHHHHH-HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHH--HHGGGGGCSCHHH
T ss_pred             HHhhhhhcccchhHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHH--HHHHHHhccCHHH
Confidence            7542110  001111222 4666666 479999999999999999888754422222     223  5555777899999


Q ss_pred             HHHHHHHHHHHHhcC-HHH--HHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448          186 RVRVLSLIVKLFSVS-RSV--ASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE  241 (463)
Q Consensus       186 R~Rv~el~v~ia~~S-~~~--~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~  241 (463)
                      |.-.+.++.++...- ...  ..... ..+++.+...+.+ .|.=||-.|.+++.++-.
T Consensus       156 ~~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d-~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          156 IAAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGH-GDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTC-SSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHH
Confidence            999999888876430 000  00000 1345566677899 999999999999999876

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=95.79  E-value=1.1  Score=50.97  Aligned_cols=335  Identities=11%  Similarity=0.087  Sum_probs=163.0

Q ss_pred             hhhchHHHHHHhhc-----CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccC----cHHHHHH--hhcCCchHHHHH
Q 012448           77 LIPHYMPFVQVGLT-----ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYE----IYPLLLD--CLINGNEEVATA  145 (463)
Q Consensus        77 l~~~~~~~l~~gL~-----h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~----l~~~li~--~l~d~d~~va~~  145 (463)
                      ..+++.+++..-++     ++.|.||..+++.++|..+--   .       .+++    ++..++.  ++.+++..|+..
T Consensus       487 ~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~---~-------~~~~~l~~~L~~ll~~~gl~~~~~~V~~~  556 (980)
T 3ibv_A          487 SPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFF---D-------YESAAIPALIEYFVGPRGIHNTNERVRPR  556 (980)
T ss_dssp             CBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGG---G-------TCCTTHHHHHHHHTSTTTTTCCCTTTHHH
T ss_pred             hhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHH---h-------cCchhHHHHHHHHhccccccCCChhHHHH
Confidence            45567788887766     899999999999999964321   0       1223    4445556  777899999999


Q ss_pred             HHHHHHHHhCCCCC-ccccccCCCcchhhHhhHhhc----CC-----------------chhHHHHHHHHHHHHhcC---
Q 012448          146 SMDAIKKLAGFPNG-IDIIFPADNKAATDLGNLVAQ----CS-----------------SLGRVRVLSLIVKLFSVS---  200 (463)
Q Consensus       146 A~~~L~~lak~~~~-l~~l~~~~~~~~~~L~~~~~~----~~-----------------~~vR~Rv~el~v~ia~~S---  200 (463)
                      |..++.++++.-+. +.. +-++.+.  .+.+.+..    .+                 -.-+..+||.+..+.+..   
T Consensus       557 a~~af~~f~~~~~~~L~~-~~~~il~--~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~  633 (980)
T 3ibv_A          557 AWYLFYRFVKSIKKQVVN-YTESSLA--MLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLT  633 (980)
T ss_dssp             HHHHHHHHHHHTTTTCSS-SHHHHHH--HTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHhhHHhhh-HHHHHHH--HHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCC
Confidence            99999999876542 110 0011222  33333321    11                 014789999999998663   


Q ss_pred             HH-H---HHHHHhhccHHHHHhhcCC---CCcHHHHH-hHHHHHHHHHh-hHHH-HH---HHH-hcchHHHHHHHhcccc
Q 012448          201 RS-V---ASVIFKANLLTLLEEGVSK---KNDTLETL-SILELLYELAE-IQHS-AE---FLS-RTTLLQLLCSLIGNSA  266 (463)
Q Consensus       201 ~~-~---~~~v~~sgl~~~ll~eL~~---~~DvLv~l-nalell~eLa~-t~~g-~~---~L~-~~gi~~~L~~~i~~~~  266 (463)
                      ++ -   ++.+. +.++..+...+..   .+|...++ -.+-.+..+++ -+++ .+   ++. =..+.+.+...+..-.
T Consensus       634 ~e~~~~~l~~ll-~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~  712 (980)
T 3ibv_A          634 PEEQALYCDSLI-NALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMG  712 (980)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence            22 2   22222 2344444444432   12544432 22333355554 1111 00   000 0012222222333334


Q ss_pred             cchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCC--HHHHHHHhhcCc
Q 012448          267 TETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSS--IQGATLLLLCLP  344 (463)
Q Consensus       267 ~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss--~eGk~~L~~~~~  344 (463)
                      .++.+|.++.-...++...      .+.-+..-.|.+++.+.   .+-+.+.....+|-+|+|-..  .+-...|..   
T Consensus       713 ~~~~irea~~~~~~r~i~~------lg~~~~p~lp~~i~~ll---~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~---  780 (980)
T 3ibv_A          713 FNEDIRGAVRFTSGRIINV------VGPDMLPKVPQLISILL---NSIDMNELVDVLSFISQLIHIYKDNMMEITNR---  780 (980)
T ss_dssp             CSHHHHHHHHHHHHHHTTT------THHHHTTTHHHHHHHHH---HHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHH---
T ss_pred             CcHHHHHHHHHHHHHHHHH------ccHhHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            5666666665555555541      11112233667777653   344567788888999888652  222333332   


Q ss_pred             hhHHHHHHHHHhhccchh------------hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHH
Q 012448          345 PAARHVIDAAFDRQGHGK------------QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGL  412 (463)
Q Consensus       345 ~~~~~~l~~~~~~~~~~~------------k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~  412 (463)
                       .+..++.+.+.......            |-.-+.-+..|+...-.  ..++.+..-. ..    +        +-+..
T Consensus       781 -ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~--~v~~s~~n~~-~l----~--------~~l~~  844 (980)
T 3ibv_A          781 -MLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFG--SILFTEENQV-YF----D--------PLINS  844 (980)
T ss_dssp             -HHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCT--GGGGSHHHHT-TH----H--------HHHHH
T ss_pred             -HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCch--hhhcCCcchH-HH----H--------HHHHH
Confidence             33444444444433211            11111122222221100  0001000000 00    0        00222


Q ss_pred             HHHHh--cCCHHHHHHHHHHHHHhhcCchhHHHhhhccchhHhhcC
Q 012448          413 FLSVL--QQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTD  456 (463)
Q Consensus       413 ~~~~~--qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~~gfie~lld  456 (463)
                      ++.+.  -|.|-.+-+++.+|.-++.. ||....  -|||-+|+.+
T Consensus       845 l~~~a~~~~d~~~~K~a~~~l~~~v~~-~~~~~~--~~gf~~f~~~  887 (980)
T 3ibv_A          845 ILHFANLVGEPATQKSSIALVSKMVSL-WGGKDG--IAGFENFTLS  887 (980)
T ss_dssp             HHHHC-----CHHHHHHHHHHHHHHHC----------CCHHHHHHH
T ss_pred             HHHHhccCCChHHHHHHHHHHHHHHHH-HCCCCc--chHHHHHHHH
Confidence            33344  27788899999999999988 876543  6899999864

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.73  E-value=0.06  Score=52.28  Aligned_cols=191  Identities=13%  Similarity=0.028  Sum_probs=123.2

Q ss_pred             HhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHH----hhcCCCHHHHHHHHHHHHHHHhCC
Q 012448           36 LDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQV----GLTADSHSVKRLACKTVTCLLEDS  111 (463)
Q Consensus        36 ~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~----gL~h~~~~Vr~Lal~~l~~i~~~~  111 (463)
                      +...--+.+...|-+.+  ......+.+.|...++. .+.++.. ..+.+..    .+.+.++.|-..++..+..++..-
T Consensus        43 ~~~~~~~~~~~~lfs~d--~k~~~~ale~L~~~l~~-~~~~~~~-~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l  118 (266)
T 2of3_A           43 LGNQAKVSLMSQLFHKD--FKQHLAALDSLVRLADT-SPRSLLS-NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELI  118 (266)
T ss_dssp             HHTTBCHHHHHHHTCSC--HHHHHHHHHHHHHHHHH-CHHHHHH-THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHhcCCC--HHHHHHHHHHHHHHhhh-ChHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            34445556666666654  23333444444444332 2334433 3444444    444889999999998888876422


Q ss_pred             chhHHHHHHHhhc---cCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCC-CcchhhHhhHhhcCCchhHH
Q 012448          112 DLEASCALQLLID---YEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPAD-NKAATDLGNLVAQCSSLGRV  187 (463)
Q Consensus       112 ~~~~~~~~~~~~~---~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~-~~~~~~L~~~~~~~~~~vR~  187 (463)
                      .   . .-.-+.+   .-++|.++..+||+...|-..+-.++..+.+       ++++. +.+  .+.+.+.++|...|.
T Consensus       119 ~---~-~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v~~--~l~~g~ksKN~R~R~  185 (266)
T 2of3_A          119 R---D-TETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKMTP--MLLDALKSKNARQRS  185 (266)
T ss_dssp             H---H-TTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHHHH--HHHHGGGCSCHHHHH
T ss_pred             H---h-ccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHHHH--HHHHHHccCCHHHHH
Confidence            0   0 0000111   1478999999999999999999999888763       33444 344  666678899999998


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHhhccH---HHHHhhcCCCCcHHHHHhHHHHHHHHHh--hHHHHHHH
Q 012448          188 RVLSLIVKLFSVSRSVASVIFKANLL---TLLEEGVSKKNDTLETLSILELLYELAE--IQHSAEFL  249 (463)
Q Consensus       188 Rv~el~v~ia~~S~~~~~~v~~sgl~---~~ll~eL~~~~DvLv~lnalell~eLa~--t~~g~~~L  249 (463)
                      -.++.+..+-...--  .   -...+   +.+...+.| .|.-||-.|+.++.++-.  ...-.+|+
T Consensus       186 e~l~~l~~li~~~G~--~---~~~~l~~~~~ia~ll~D-~d~~VR~aAl~~lve~y~~~Gd~v~k~l  246 (266)
T 2of3_A          186 ECLLVIEYYITNAGI--S---PLKSLSVEKTVAPFVGD-KDVNVRNAAINVLVACFKFEGDQMWKAA  246 (266)
T ss_dssp             HHHHHHHHHHHHHCS--G---GGGGGCHHHHHGGGGGC-SSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHhcCC--C---ccccccchHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            888877776433211  1   23568   999999999 999999999999998877  44444444

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=95.68  E-value=0.15  Score=57.43  Aligned_cols=132  Identities=14%  Similarity=0.064  Sum_probs=79.4

Q ss_pred             chHHHHHHHHHHHhcccccc--chhhchHHHHHHhhc--CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHH
Q 012448           56 GLEDTLVVCLERIFKTKYGA--SLIPHYMPFVQVGLT--ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLL  131 (463)
Q Consensus        56 ~~~~~~~~vL~~il~~~~~~--~l~~~~~~~l~~gL~--h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~l  131 (463)
                      ..++.+..++..+.......  ...+++.+ +...|.  .+++.||.-+++.+|+..+.-....    +.+  ..+++.+
T Consensus       479 ~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~----~~l--~~vl~~l  551 (971)
T 2x1g_F          479 TKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP----AYI--PPAINLL  551 (971)
T ss_dssp             HHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--------CH--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH----HHH--HHHHHHH
Confidence            46777777888884433221  23344444 334455  3589999999999999765321001    111  1366777


Q ss_pred             HHhhcCCchHHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhc--CCchhHHHHHHHHHHHHhcC
Q 012448          132 LDCLINGNEEVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQ--CSSLGRVRVLSLIVKLFSVS  200 (463)
Q Consensus       132 i~~l~d~d~~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~--~~~~vR~Rv~el~v~ia~~S  200 (463)
                      +.++ +  ..|...|..++.++++.-. .+...+ +..+.  .|.+.+.+  -+...|..+|+.+..++...
T Consensus       552 ~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~--~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~  617 (971)
T 2x1g_F          552 VRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA-DPLLN--ACHASLNTGRMKNSDSVRLMFSIGKLMSLL  617 (971)
T ss_dssp             HHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHH--HHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH-HHHHH--HHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence            7888 4  5689999999999985432 111001 11222  33334444  36789999999999999864

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=95.55  E-value=0.14  Score=57.79  Aligned_cols=178  Identities=13%  Similarity=0.124  Sum_probs=104.1

Q ss_pred             chHHHHHHHHHHHhccc---c-cc-------chhhchHHHHHHhhcCC---CHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 012448           56 GLEDTLVVCLERIFKTK---Y-GA-------SLIPHYMPFVQVGLTAD---SHSVKRLACKTVTCLLEDSDLEASCALQL  121 (463)
Q Consensus        56 ~~~~~~~~vL~~il~~~---~-~~-------~l~~~~~~~l~~gL~h~---~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~  121 (463)
                      ..++.+..++..+....   . +.       .+.+-+...+...|..+   +|.||.-+||.+|+..+.-.  .. .   
T Consensus       420 ~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~-~---  493 (960)
T 1wa5_C          420 KFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KA-Q---  493 (960)
T ss_dssp             HHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HH-H---
T ss_pred             HHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HH-H---
Confidence            46777777888884321   1 11       12221234566677877   99999999999999876531  11 1   


Q ss_pred             hhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC-------Cc-cccccCCCcc-hhhHhhHhhcCC-----chhHH
Q 012448          122 LIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN-------GI-DIIFPADNKA-ATDLGNLVAQCS-----SLGRV  187 (463)
Q Consensus       122 ~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~-------~l-~~l~~~~~~~-~~~L~~~~~~~~-----~~vR~  187 (463)
                        -..+++.++.++.|++.-|...|..+|..++.+..       .. ...+.+-..+ -..|-..+...+     ....-
T Consensus       494 --l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e  571 (960)
T 1wa5_C          494 --LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE  571 (960)
T ss_dssp             --HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred             --HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence              12478889999999999999999999999987521       11 1112221111 002222222211     11345


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHhhccHHHHHhh----cCCCCcHHHHHhHHHHHHHHHhh
Q 012448          188 RVLSLIVKLFSVSRSVASVIFKANLLTLLEEG----VSKKNDTLETLSILELLYELAEI  242 (463)
Q Consensus       188 Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~e----L~~~~DvLv~lnalell~eLa~t  242 (463)
                      .+++++..++....+.+.-.. ..+++.+...    .++.+|...+..++|++.-++..
T Consensus       572 ~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~  629 (960)
T 1wa5_C          572 FLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY  629 (960)
T ss_dssp             HHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence            777777777654332211111 0233332222    34446888888899999999885

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.85  E-value=0.48  Score=53.60  Aligned_cols=135  Identities=11%  Similarity=-0.002  Sum_probs=84.5

Q ss_pred             HHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhh
Q 012448          131 LLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKA  210 (463)
Q Consensus       131 li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~s  210 (463)
                      +-.|..|++..|.+.|+-+|..|+-..+        +..+ +.+..+....|..+|+.+-..+..++.-++. .      
T Consensus       583 L~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~-rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~------  646 (963)
T 4ady_A          583 LHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVP-RIVQLLSKSHNAHVRCGTAFALGIACAGKGL-Q------  646 (963)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHH-HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-H------
T ss_pred             HHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHH-HHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-H------
Confidence            3356778888899999999998864433        1222 1222133468999999998877777644331 1      


Q ss_pred             ccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHH-HHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcc
Q 012448          211 NLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSA-EFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLS  284 (463)
Q Consensus       211 gl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~-~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~  284 (463)
                      .+++.|..-..| .|..||.||+.-+..+.. +++.. ..  =.++.++|.+++.+-.+||..+--+.+..|++-.
T Consensus       647 ~aid~L~~L~~D-~d~~Vrq~Ai~ALG~Ig~gtnna~~~r--va~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a  719 (963)
T 4ady_A          647 SAIDVLDPLTKD-PVDFVRQAAMIALSMILIQQTEKLNPQ--VADINKNFLSVITNKHQEGLAKFGACVAQGIMNA  719 (963)
T ss_dssp             HHHHHHHHHHTC-SSHHHHHHHHHHHHHHSTTCCTTTCTT--HHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHccC-CCHHHHHHHHHHHHHHhcCCccccchH--HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence            234444445678 999999999999999887 33220 00  0234455666766656677666555555666543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=94.53  E-value=0.077  Score=50.88  Aligned_cols=111  Identities=13%  Similarity=0.139  Sum_probs=74.0

Q ss_pred             ChHHHHH-ccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448           40 PLSVILN-TLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA  118 (463)
Q Consensus        40 ~l~~L~~-~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~  118 (463)
                      .+|.|+. ||.+..  +..++.+..+|-.+.....+   ...+.+.+..|++|.+|.||.-++..+.+++++-+.... -
T Consensus       103 ~l~~lveK~l~~~k--~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~-~  176 (278)
T 4ffb_C          103 WTPLLVEKGLTSSR--ATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNV-N  176 (278)
T ss_dssp             HHHHHHHHTSSCCC--HHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTC-C
T ss_pred             HHHHHHHHHhcCcc--HHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcC-C
Confidence            3566665 576654  45555555555554332222   234678899999999999999999999999875211000 0


Q ss_pred             HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC
Q 012448          119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP  157 (463)
Q Consensus       119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~  157 (463)
                      ..... ..+++.+..++.|.|.+|...|++++..+-++-
T Consensus       177 ~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          177 VQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             chhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            00001 134556778999999999999999999997765

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.41  E-value=0.51  Score=53.73  Aligned_cols=194  Identities=15%  Similarity=0.194  Sum_probs=133.5

Q ss_pred             HHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCC-HHHHHHHHHHHHHHHhCC
Q 012448           33 KKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADS-HSVKRLACKTVTCLLEDS  111 (463)
Q Consensus        33 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~-~~Vr~Lal~~l~~i~~~~  111 (463)
                      +.++=. -+|.++.++.+..  ...++.+...+..+++...|..+ ..+.+.|..+|.+.. =..|..+++.++++++..
T Consensus        90 e~~~~~-~~~~~~~~~~dk~--~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~  165 (986)
T 2iw3_A           90 EPYIVQ-LVPAICTNAGNKD--KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA  165 (986)
T ss_dssp             HHHHHT-THHHHHHHTTCSS--HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred             ccchHH-HHHHHHHHhcCCc--hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence            444433 4899999998876  66778888888888888877655 778999999998774 689999999999999865


Q ss_pred             chhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHH
Q 012448          112 DLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLS  191 (463)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~e  191 (463)
                         ..++...+.  +++|.+-.|+-|-..+|++.|.+++.+++..-...++   .+.++  .|.+-+.+++.     |=+
T Consensus       166 ---~~~~~~~~~--~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~--~~~~~~~~p~~-----~~~  230 (986)
T 2iw3_A          166 ---KDQVALRMP--ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIP--SLIQCIADPTE-----VPE  230 (986)
T ss_dssp             ---HHHHHHHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHH--HHHHHHHCTTH-----HHH
T ss_pred             ---HHHHHHhcc--chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHH--HHHHHhcChhh-----hHH
Confidence               332444544  5999999999999999999999999999865433221   12334  44444555544     555


Q ss_pred             HHHHHHhc------CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh----hHHHHHHHHh
Q 012448          192 LIVKLFSV------SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE----IQHSAEFLSR  251 (463)
Q Consensus       192 l~v~ia~~------S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~----t~~g~~~L~~  251 (463)
                      ++-.+++.      ..-++..     +.|.|...|.. ...=.+--+.-++..|++    -.+.+.||-+
T Consensus       231 ~~~~l~~~tfv~~v~~~~l~~-----~~p~l~r~l~~-~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~  294 (986)
T 2iw3_A          231 TVHLLGATTFVAEVTPATLSI-----MVPLLSRGLNE-RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK  294 (986)
T ss_dssp             HHHHHTTCCCCSCCCHHHHHH-----HHHHHHHHHTS-SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT
T ss_pred             HHHHhhcCeeEeeecchhHHH-----HHHHHHhhhcc-CcchhheeeEEEEcchhhhcCCHHHHhhhhhh
Confidence            65555543      2333333     34666667766 555555666666777776    3445566653

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=94.29  E-value=1.9  Score=49.01  Aligned_cols=139  Identities=12%  Similarity=0.006  Sum_probs=84.8

Q ss_pred             chHHHHHHHHHHHhcccccc---chhhchHHHHHHhhc-----CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCc
Q 012448           56 GLEDTLVVCLERIFKTKYGA---SLIPHYMPFVQVGLT-----ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEI  127 (463)
Q Consensus        56 ~~~~~~~~vL~~il~~~~~~---~l~~~~~~~l~~gL~-----h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l  127 (463)
                      ..++.++.++..+-+.....   .+.+++.+++..-..     .+.+.||.-+++.+|+..+--..... ..     ..+
T Consensus       468 ~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~-~l-----~~v  541 (1049)
T 3m1i_C          468 HNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FL-----RTV  541 (1049)
T ss_dssp             HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HH-----HHH
T ss_pred             HHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH-HH-----HHH
Confidence            46788888998885433222   235566666665333     25677886799999975431100011 11     135


Q ss_pred             HHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcccc-c-cCCCcc-----hhhHhhHhhcCCchhHHHHHHHHHHHHhcC
Q 012448          128 YPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDII-F-PADNKA-----ATDLGNLVAQCSSLGRVRVLSLIVKLFSVS  200 (463)
Q Consensus       128 ~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l-~-~~~~~~-----~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S  200 (463)
                      ++.++.++.+++..|...|..++.++++.-+. ..+ . ..+..+     -..|...+..-+..-+..+|+.+..+++..
T Consensus       542 l~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~-~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~  620 (1049)
T 3m1i_C          542 ILKLFEFMHETHEGVQDMACDTFIKIVQKCKY-HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1049)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH-HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence            66777899999999999999999999875321 110 1 111112     012333444456666789999999998765


Q ss_pred             H
Q 012448          201 R  201 (463)
Q Consensus       201 ~  201 (463)
                      +
T Consensus       621 ~  621 (1049)
T 3m1i_C          621 R  621 (1049)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=93.94  E-value=3.1  Score=47.38  Aligned_cols=303  Identities=10%  Similarity=0.132  Sum_probs=185.1

Q ss_pred             HHHHHccccCCCCcchHHHHHHHHHHHhcccccc-chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 012448           42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQ  120 (463)
Q Consensus        42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~  120 (463)
                      ..++..|....  ......++.-+...+....+. .+..++.+.+..++..-.+.  +-|+..++.+.++...... .--
T Consensus        17 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~-~e~   91 (986)
T 2iw3_A           17 EELFQKLSVAT--ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPS-VEP   91 (986)
T ss_dssp             HHHHHHHTTCC--TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTT-THH
T ss_pred             HHHHhhccccc--hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCC-ccc
Confidence            34777777643  333555555555554433222 22236788899999887666  9999999999976643222 222


Q ss_pred             HhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC--CccccccCCCcchhhHhhHhhc-CCchhHHHHHHHHHHHH
Q 012448          121 LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN--GIDIIFPADNKAATDLGNLVAQ-CSSLGRVRVLSLIVKLF  197 (463)
Q Consensus       121 ~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~--~l~~l~~~~~~~~~~L~~~~~~-~~~~vR~Rv~el~v~ia  197 (463)
                      .++  ++++.++.+.+|.+..|.++|..++..+.+.-+  ++..     +++  .|-..+.. ..=..|+-++.++-.++
T Consensus        92 ~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~-----~~~--~~~~~~~~~~kw~~k~~~l~~~~~~~  162 (986)
T 2iw3_A           92 YIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKA-----LLP--HLTNAIVETNKWQEKIAILAAFSAMV  162 (986)
T ss_dssp             HHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHH-----HHH--HHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             chH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHH-----HHH--HHHHHhccccchHHHHHHHHHHHHHH
Confidence            333  589999999999999999999999888865433  2222     233  33323322 24568999999999999


Q ss_pred             hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhh
Q 012448          198 SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIM  277 (463)
Q Consensus       198 ~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ail  277 (463)
                      ..+++.+....- +++|.+-.++-| .=.=|+..+.+.+..++..-.+..   =...+..|++.|.+.++-|-    ++ 
T Consensus       163 ~~~~~~~~~~~~-~~~p~~~~~~~d-~k~~v~~~~~~~~~~~~~~~~n~d---~~~~~~~~~~~~~~p~~~~~----~~-  232 (986)
T 2iw3_A          163 DAAKDQVALRMP-ELIPVLSETMWD-TKKEVKAAATAAMTKATETVDNKD---IERFIPSLIQCIADPTEVPE----TV-  232 (986)
T ss_dssp             HHSHHHHHHHHH-HHHHHHHHHTTC-SSHHHHHHHHHHHHHHGGGCCCTT---TGGGHHHHHHHHHCTTHHHH----HH-
T ss_pred             HHhHHHHHHhcc-chhcchHhhccc-CcHHHHHHHHHHHHHHHhcCCCcc---hhhhHHHHHHHhcChhhhHH----HH-
Confidence            998988887764 899999999999 556678888888888887311110   12456777777776655442    01 


Q ss_pred             Hhhhhccccccchhcchh-hhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHh
Q 012448          278 ISGRLLSKDDSHMFIDES-SAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFD  356 (463)
Q Consensus       278 i~g~i~~f~~~~~~~~~~-~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~  356 (463)
                        --+.+ -.++.-++.| ++--.|- +.+   .+.+....++--++-.++++++-++-.+-...- -+.+---+++..+
T Consensus       233 --~~l~~-~tfv~~v~~~~l~~~~p~-l~r---~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~  304 (986)
T 2iw3_A          233 --HLLGA-TTFVAEVTPATLSIMVPL-LSR---GLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLKSNFA  304 (986)
T ss_dssp             --HHHTT-CCCCSCCCHHHHHHHHHH-HHH---HHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHHHHTT
T ss_pred             --HHhhc-CeeEeeecchhHHHHHHH-HHh---hhccCcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHHHHhh
Confidence              11111 0122224455 3332333 332   345667777777788888888854433322221 1233444455555


Q ss_pred             hccchh----hHhHHhhhHHHhcC
Q 012448          357 RQGHGK----QLAALHGLANIAGK  376 (463)
Q Consensus       357 ~~~~~~----k~r~L~al~~Il~~  376 (463)
                      .++..-    ..||++.|..+-+.
T Consensus       305 ~~~~pe~r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          305 TIADPEAREVTLRALKTLRRVGNV  328 (986)
T ss_dssp             TCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhcc
Confidence            555432    44556666555554

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=93.74  E-value=6.1  Score=41.30  Aligned_cols=301  Identities=11%  Similarity=0.076  Sum_probs=174.1

Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc
Q 012448           81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI  160 (463)
Q Consensus        81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l  160 (463)
                      |...| .|-+. ++.+|+||+.-|.+-..+-   +. +.+     ..+-.+++.+-|+|..|...|++.|-.++|. ..+
T Consensus        31 y~~Il-~~~kg-~~k~K~LaaQ~I~kffk~F---P~-l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i   98 (507)
T 3u0r_A           31 YQVIL-DGVKG-GTKEKRLAAQFIPKFFKHF---PE-LAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENL   98 (507)
T ss_dssp             HHHHH-HGGGS-CHHHHHHHHHHHHHHGGGC---GG-GHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCH
T ss_pred             HHHHH-HhcCC-CHHHHHHHHHHHHHHHhhC---hh-hHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhh
Confidence            44443 45555 6999999999999999887   44 433     3455677899999999999999999999988 333


Q ss_pred             cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHH
Q 012448          161 DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELA  240 (463)
Q Consensus       161 ~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa  240 (463)
                      .     .+.+  .|.+++...+...+--|-..++++.+..+..    .=+|+|+.+..     .|..+|-.++..|.+=.
T Consensus        99 ~-----kiaD--vL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~----tl~~lf~~i~~-----~~e~~Rer~lkFi~~kl  162 (507)
T 3u0r_A           99 P-----RVAD--ILTQLLQTDDSAEFNLVNNALLSIFKMDAKG----TLGGLFSQILQ-----GEDIVRERAIKFLSTKL  162 (507)
T ss_dssp             H-----HHHH--HHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHH-----SCHHHHHHHHHHHHHHG
T ss_pred             h-----hHHH--HHHHHHhccchHHHHHHHHHHHHHHhcChHH----HHHHHHHHHcc-----cchHHHHHHHHHHHHHH
Confidence            2     2333  6665666677788888999999999998744    12367777665     46789999999887755


Q ss_pred             hh--HHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhcc------cc
Q 012448          241 EI--QHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGF------LQ  312 (463)
Q Consensus       241 ~t--~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~------~~  312 (463)
                      .+  +.-..-=.+.-+++.+-..+.+...+-|     .|+..++... .++.   .+  .+.-.+++.+.+.      ++
T Consensus       163 ~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF-----~L~m~lL~~l-kl~~---t~--~g~qeLv~ii~eQa~L~~~f~  231 (507)
T 3u0r_A          163 KTLPDEVLTKEVEELILTESKKVLEDVTGEEF-----VLFMKILSGL-KSLQ---TV--SGRQQLVELVAEQADLEQTFN  231 (507)
T ss_dssp             GGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHH-----HHHHHHHHTS-GGGS---SH--HHHHHHHHHHHHHHTTTSCCC
T ss_pred             hhcchhhccHHHHHHHHHHHHHHhccccHHHH-----HHHHHHHHhc-cccc---Cc--hHHHHHHHHHHHHHhccCCCC
Confidence            42  1111000122345555666666666665     2333444321 1111   10  1122233322222      12


Q ss_pred             CCCh----hhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccch-----hhHhHHhhhHHHhcCCCchhhh
Q 012448          313 SQDS----DECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHG-----KQLAALHGLANIAGKTRSEDKI  383 (463)
Q Consensus       313 ~~d~----~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~-----~k~r~L~al~~Il~~~r~~~~~  383 (463)
                      ..|+    ..+.++--++-.+.+.+++-+++.-    -.++++-.+ +.+...     .|++-|..++.+....+..   
T Consensus       232 ~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y----~~~kIlP~l-~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~---  303 (507)
T 3u0r_A          232 PSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTY----FCEQVLPNL-GTLTTPVEGLDIQLEVLKLLAEMSSFCGDM---  303 (507)
T ss_dssp             SSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHH----HHHHTGGGT-TCCCCC--CCCHHHHHHHHHHHHHTTCCCC---
T ss_pred             CcCHHHHHHHHHHHHHHHHHhccCCChHHHHHH----HHHhhccch-hhccccccchHHHHHHHHHHHHHccCCCcc---
Confidence            2332    2334444445555554444333321    223333322 222222     5999999999998865421   


Q ss_pred             hhhhhHHHHHHHHHHHHHhhCCCCChhHHH-----HH--HhcCCHHHHHHHHHHHH
Q 012448          384 ILNADAEESLRHLIYEVASRSSKLTPSGLF-----LS--VLQQAAEIRLAGYRMIT  432 (463)
Q Consensus       384 il~~~~e~~l~~~~ye~~~~~~~~~p~~~~-----~~--~~qpF~elr~A~~~~l~  432 (463)
                         +.++. +...+|+.+-.-+-..|.+.-     -+  -.-.|..+-|--|.+-+
T Consensus       304 ---e~a~~-~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~  355 (507)
T 3u0r_A          304 ---EKLET-NLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQ  355 (507)
T ss_dssp             ---TTHHH-HHHHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHH
T ss_pred             ---chHHH-HHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHH
Confidence               33444 566788888775556665211     01  11247878877777433

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=92.50  E-value=9.7  Score=43.78  Aligned_cols=137  Identities=7%  Similarity=-0.034  Sum_probs=88.2

Q ss_pred             cchHHHHHHHHHHHhcccccc---chhhchHHHHHHhhcCC-----CHHHHHHHHHHHHHHHh---CCchhHHHHHHHhh
Q 012448           55 PGLEDTLVVCLERIFKTKYGA---SLIPHYMPFVQVGLTAD-----SHSVKRLACKTVTCLLE---DSDLEASCALQLLI  123 (463)
Q Consensus        55 ~~~~~~~~~vL~~il~~~~~~---~l~~~~~~~l~~gL~h~-----~~~Vr~Lal~~l~~i~~---~~~~~~~~~~~~~~  123 (463)
                      -...+.+|.+++.+-++..+.   ...+++.+.|..-.+|+     .+.|+.-.++.+|+.-+   +.   .. ..+   
T Consensus       493 W~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h---~~-~L~---  565 (1073)
T 3gjx_A          493 WKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH---WK-FLK---  565 (1073)
T ss_dssp             HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC---HH-HHH---
T ss_pred             HHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC---HH-HHH---
Confidence            356889999999996665542   46788889998888887     35567767778877432   11   12 222   


Q ss_pred             ccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC-ccccccCCCcchhhHh-------hHhhcCCchhHHHHHHHHHH
Q 012448          124 DYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG-IDIIFPADNKAATDLG-------NLVAQCSSLGRVRVLSLIVK  195 (463)
Q Consensus       124 ~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~-l~~l~~~~~~~~~~L~-------~~~~~~~~~vR~Rv~el~v~  195 (463)
                        .++..++..+.+.+.+|...|.+++.+|+..-+. +-...+....+  .+.       .....-+..-....|+.+..
T Consensus       566 --~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p--~i~~il~~~~~~~~~l~~~~~~~lyeav~~  641 (1073)
T 3gjx_A          566 --TVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMP--FIDEILNNINTIICDLQPQQVHTFYEAVGY  641 (1073)
T ss_dssp             --HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSC--HHHHHHTSHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccch--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence              2344556778999999999999999999744321 11111222333  333       22233366777888998888


Q ss_pred             HHhcCHH
Q 012448          196 LFSVSRS  202 (463)
Q Consensus       196 ia~~S~~  202 (463)
                      +.+.-+.
T Consensus       642 vi~~~p~  648 (1073)
T 3gjx_A          642 MIGAQTD  648 (1073)
T ss_dssp             HHTTCCC
T ss_pred             HHHhCCC
Confidence            8876554

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=91.49  E-value=2  Score=41.39  Aligned_cols=157  Identities=13%  Similarity=0.131  Sum_probs=110.0

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHH-HhhccCcHHHHHHhhcCC-------chH--H---HHHHHHHHHHH
Q 012448           87 VGLTADSHSVKRLACKTVTCLLEDSDLEASCALQ-LLIDYEIYPLLLDCLING-------NEE--V---ATASMDAIKKL  153 (463)
Q Consensus        87 ~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~-~~~~~~l~~~li~~l~d~-------d~~--v---a~~A~~~L~~l  153 (463)
                      .-|..|+  -|+-|+.++++--+.-   .. ++- +-...|.+..+++.|-..       ..+  .   --.|...|.-+
T Consensus        10 ~~L~~p~--~Re~AL~eLsk~Re~~---~~-La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcv   83 (268)
T 2fv2_A           10 NELSSPE--TRENALLELSKKRESV---PD-LAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCV   83 (268)
T ss_dssp             HHTSSTT--THHHHHHHHHHHTTTC---TT-HHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCch--hHHHHHHHHHHhhhcc---cc-HHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHH
Confidence            3344444  5999999998844432   22 333 446667776665544332       221  1   12355667888


Q ss_pred             hCCCCCccccccCCCcchhhHhhHhhcCC-----chhHHHHHHHHHHHHhc-CHHHHHHHHhhccHHHHHhhcCCCCcHH
Q 012448          154 AGFPNGIDIIFPADNKAATDLGNLVAQCS-----SLGRVRVLSLIVKLFSV-SRSVASVIFKANLLTLLEEGVSKKNDTL  227 (463)
Q Consensus       154 ak~~~~l~~l~~~~~~~~~~L~~~~~~~~-----~~vR~Rv~el~v~ia~~-S~~~~~~v~~sgl~~~ll~eL~~~~DvL  227 (463)
                      |.|++=-..+..++.--  +|-+.+...+     +.+|.-.+.++..+.|. ++|...+..+++++|..+.-++. ...+
T Consensus        84 Ashpetr~~Fl~a~ipl--yLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~-Gsel  160 (268)
T 2fv2_A           84 ASHPETRSAFLAAHIPL--FLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMES-GSEL  160 (268)
T ss_dssp             HHCTTTHHHHHHTTGGG--GTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHH-SCHH
T ss_pred             HcCcchhhHHHHccchH--HhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhh-ccHH
Confidence            98885323344555543  5555554333     67788888888888776 68999999999999999999999 9999


Q ss_pred             HHHhHHHHHHHHHhhHHHHHHHHhc
Q 012448          228 ETLSILELLYELAEIQHSAEFLSRT  252 (463)
Q Consensus       228 v~lnalell~eLa~t~~g~~~L~~~  252 (463)
                      .|.-|.-++..+-....|.+|+.++
T Consensus       161 SKtvAtfIlqKIL~dd~GL~YiC~t  185 (268)
T 2fv2_A          161 SKTVATFILQKILLDDTGLAYICQT  185 (268)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHhccchhHHHHHcc
Confidence            9999999999999999999999875

>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*

Probab=90.94  E-value=2.6  Score=44.03  Aligned_cols=192  Identities=16%  Similarity=0.223  Sum_probs=126.8

Q ss_pred             HHHHHHHHHhccccccchhhch-HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCC
Q 012448           60 TLVVCLERIFKTKYGASLIPHY-MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLING  138 (463)
Q Consensus        60 ~~~~vL~~il~~~~~~~l~~~~-~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~  138 (463)
                      .+.++|+++++-.+.+.+.+-| .+++..||+..++.+..+||+-+.+   ..      -..++.+.+++..++..+.++
T Consensus        95 ~Li~Ll~~il~~~~Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~~---s~------pk~lfa~t~iidiLL~lyFd~  165 (500)
T 3vld_A           95 YLLDVVDKLVPMADFDDVLEVYSAEDLVKALRSEIDPLKVAACRVIEN---SQ------PKGLFATSNIIDILLDILFDE  165 (500)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHHT---CS------SGGGGTTSSHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHhcCCHHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhcc---cC------chhHhccChHHHHHHHHHcCC
Confidence            3788999999888888888766 9999999999999999999888873   22      346888999999999999999


Q ss_pred             chHHH---HHHHHHHHHHhCCCCCc--cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcC-HHHHHHHHhhcc
Q 012448          139 NEEVA---TASMDAIKKLAGFPNGI--DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVS-RSVASVIFKANL  212 (463)
Q Consensus       139 d~~va---~~A~~~L~~lak~~~~l--~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S-~~~~~~v~~sgl  212 (463)
                      ++.+.   ...=++++.++  ..++  ..|+. +.++  .|...=.+.+.++..|.++++.-++.+= ..-+.  .+-.+
T Consensus       166 ~t~i~~vvn~IE~~~~~Ls--sdeLirrril~-nnl~--lL~~vK~~~~~i~~sRLLdll~il~~~i~~~eF~--~~Lfi  238 (500)
T 3vld_A          166 KVENDKLITAIEKALERLS--TDELIRRRLFD-NNLP--YLVSVKGRMETVSFVRLIDFLTIEFQFISGPEFK--DIIFC  238 (500)
T ss_dssp             TCCCHHHHHHHHHHHHHHT--TSHHHHHHHHT-TTHH--HHHHHHHHCCHHHHHHHHHHHHHHHTTCCTTTCC--HHHHC
T ss_pred             CCCcHHHHHHHHHHHHHcC--chHHHHHHHHH-HhHH--HHHHHhcCCCceeHHHHHHHHHHHhcccCcccCC--cceee
Confidence            98854   54555566664  2232  23333 3445  5553333568899999999998776552 00000  00022


Q ss_pred             HHH--HHhhcCCCCcHHHHHhHHHHHHHHHhh------HHHHHHHHhcchHHHHHHHhcccccchhhh
Q 012448          213 LTL--LEEGVSKKNDTLETLSILELLYELAEI------QHSAEFLSRTTLLQLLCSLIGNSATETILR  272 (463)
Q Consensus       213 ~~~--ll~eL~~~~DvLv~lnalell~eLa~t------~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r  272 (463)
                      |+.  +..-+   +|+|+-.+.++--+.|...      .+-.+++..  ++..+.++-.+-+++|-++
T Consensus       239 ~~~~Ei~k~~---dDil~fI~ii~yYtkLl~~~~~~~~~w~l~~i~p--~l~~~~~ly~~~d~~~dv~  301 (500)
T 3vld_A          239 FTKEEILKSV---EDILVFIELVNYYTKFLLEIRNQDKYWALRHVKK--ILPVFAQLFEDTENYPDVR  301 (500)
T ss_dssp             CCHHHHHHHT---TSHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHGG--GHHHHHHHHHCTTTCHHHH
T ss_pred             ccHHHHHhhh---cchHHHHHHHHHHHHHHHHhcccchHHHHHHhHH--HHHHHHHHhcCchhhhHHH
Confidence            221  11122   5999999998888877653      222334433  5555555555556666654

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=90.21  E-value=3.3  Score=39.35  Aligned_cols=156  Identities=11%  Similarity=0.047  Sum_probs=105.8

Q ss_pred             ChHHHHHHHhcCChHHH---HHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHH-hhcCCCHHHHHHHHHH
Q 012448           28 NDAAAKKFLDRFPLSVI---LNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQV-GLTADSHSVKRLACKT  103 (463)
Q Consensus        28 s~~~~~~~~~~~~l~~L---~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~-gL~h~~~~Vr~Lal~~  103 (463)
                      =++.|+..+..++.+.+   +..|-+.+ ....+-.+++.|.+. .      ..+...+++.. --..++=.||+.++.+
T Consensus        56 ~~~~a~~~~~~~~~~~~~~la~~L~~~~-~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a  127 (240)
T 3l9t_A           56 EEQRALTDYKSNDGEYIKKLAFLAYQSD-VYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKA  127 (240)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhCc-chHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHH
Confidence            46778888888887744   44444332 345555667766665 2      22456667765 4556677999999998


Q ss_pred             HHHHHh-CCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCC
Q 012448          104 VTCLLE-DSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCS  182 (463)
Q Consensus       104 l~~i~~-~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~  182 (463)
                      ++.++. ..   ..         .+++.+..-..|++..|.+.|+..+.--++.+ ..+ .-+..+++  .|.++....+
T Consensus       128 ~~~~~~~~~---pe---------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~-~~k-~dp~~ll~--iL~~L~~D~s  191 (240)
T 3l9t_A          128 FDEFCKKIE---YK---------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRP-YFK-ENPNEAIR--RIADLKEDVS  191 (240)
T ss_dssp             HHHHHHHHC---TT---------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGST-TTT-TCHHHHHH--HHHTTTTCSC
T ss_pred             HHHHHHhcC---HH---------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccc-hhh-cCHHHHHH--HHHHhcCChH
Confidence            888764 22   11         26777788999999999999999876544432 111 11222344  6666777889


Q ss_pred             chhHHHHHHHHHHHHhcCHHHHHHH
Q 012448          183 SLGRVRVLSLIVKLFSVSRSVASVI  207 (463)
Q Consensus       183 ~~vR~Rv~el~v~ia~~S~~~~~~v  207 (463)
                      .-||.-|=.-+-.++|+.|+.....
T Consensus       192 ~yVrKSVan~LrD~SK~~Pd~V~~~  216 (240)
T 3l9t_A          192 EYVRKSVGNALRDISKKFPDLVKIE  216 (240)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhCHHHHHHH
Confidence            9999999999999999999875543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=89.38  E-value=2.5  Score=42.16  Aligned_cols=118  Identities=14%  Similarity=0.094  Sum_probs=82.9

Q ss_pred             HHHHhhcCCchHHHHHHHHHHHH-HhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHH
Q 012448          130 LLLDCLINGNEEVATASMDAIKK-LAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIF  208 (463)
Q Consensus       130 ~li~~l~d~d~~va~~A~~~L~~-lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~  208 (463)
                      .++.-|.+.+....+.|+..|+. +.+...-.+-.+..+.+.  .|.+.+...+.-..--++..+.++.-+ ++-.+-++
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~--~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v~Gm~gvv  198 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLS--CLIRVGAAADHNYQSYILRALGQLMLF-VDGMLGVV  198 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHH--HHHHHHTTSCHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHH--HHHHHHHhcChHHHHHHHHHHHHHHhc-cccccchh
Confidence            34455666677778888888888 555444333344445555  666577666666777777778888876 55554444


Q ss_pred             -hhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHh
Q 012448          209 -KANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSR  251 (463)
Q Consensus       209 -~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~  251 (463)
                       ...++.++..-+.+ .|.+|...|+++|.-++. ++.++..+.+
T Consensus       199 s~~~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~  242 (339)
T 3dad_A          199 AHSDTIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIR  242 (339)
T ss_dssp             HCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             CCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHH
Confidence             55677999888887 999999999999999999 5556664443

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=89.06  E-value=19  Score=35.78  Aligned_cols=231  Identities=14%  Similarity=0.105  Sum_probs=151.4

Q ss_pred             HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448          118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF  197 (463)
Q Consensus       118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia  197 (463)
                      +++.+-+.+++.+++.++..=+-+-.+.+..+...+.+...|-.       .+             .+     +   .+.
T Consensus        70 L~~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~-------~p-------------~v-----~---Yl~  121 (341)
T 1upk_A           70 LAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTR-------TP-------------TV-----E---YIC  121 (341)
T ss_dssp             HHHHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTB-------CH-------------HH-----H---HHH
T ss_pred             HHHHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCC-------Cc-------------hh-----H---HHH
Confidence            56666777999999999999999999999999988877653210       00             00     1   111


Q ss_pred             hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccc----cchhhhh
Q 012448          198 SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSA----TETILRS  273 (463)
Q Consensus       198 ~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~----~dpl~r~  273 (463)
                      .          .-.++..++...++ .|+  -++|=.||+|..+.+..++|+...+.+.++.+++....    +|.+.. 
T Consensus       122 ~----------~peil~~L~~gYe~-~di--Al~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~T-  187 (341)
T 1upk_A          122 T----------QQNILFMLLKGYES-PEI--ALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFAT-  187 (341)
T ss_dssp             T----------CTHHHHHHHHGGGS-TTT--HHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHH-
T ss_pred             c----------CHHHHHHHHHhhcc-chh--HhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHH-
Confidence            2          23567778888888 887  67889999999999999999999999999999998754    333311 


Q ss_pred             hhhhHhhhhccccccch-hcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhh--cCchhHHHH
Q 012448          274 RAIMISGRLLSKDDSHM-FIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLL--CLPPAARHV  350 (463)
Q Consensus       274 ~aili~g~i~~f~~~~~-~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~--~~~~~~~~~  350 (463)
                           .--++.   .++ .+.+-+.++|-.|++..-.++++++-..+--++--||.|=.......++.+  .+++.++-+
T Consensus       188 -----fkelLt---~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~  259 (341)
T 1upk_A          188 -----FKDLLT---RHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLM  259 (341)
T ss_dssp             -----HHHHHH---SSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHH
T ss_pred             -----HHHHHh---ccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHH
Confidence                 111111   010 011224566888887766788999999999999999988766666555553  123333333


Q ss_pred             HHHHHhhccchhhHhHHhhhHHHhcCCC--chhhhhhhhhHHHHHHHHHHHHH
Q 012448          351 IDAAFDRQGHGKQLAALHGLANIAGKTR--SEDKIILNADAEESLRHLIYEVA  401 (463)
Q Consensus       351 l~~~~~~~~~~~k~r~L~al~~Il~~~r--~~~~~il~~~~e~~l~~~~ye~~  401 (463)
                      |...-+. +...+..|.|-+..+..-++  ++...|+-..-+. |.+.. ..+
T Consensus       260 M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~k-Ll~fl-~~f  309 (341)
T 1upk_A          260 MNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAK-LIEFL-SKF  309 (341)
T ss_dssp             HHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHH-HHHHH-HHT
T ss_pred             HHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHH-HHHHH-HhC
Confidence            3332221 12228889999988777553  2355566455554 55444 444

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=87.85  E-value=0.33  Score=51.85  Aligned_cols=112  Identities=12%  Similarity=0.062  Sum_probs=83.9

Q ss_pred             hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC-CchHHHHHH-HHHHHHHhC
Q 012448           78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN-GNEEVATAS-MDAIKKLAG  155 (463)
Q Consensus        78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d-~d~~va~~A-~~~L~~lak  155 (463)
                      .+.+.+.+..||..+++.||..|+.++.-++ ..   .. +      +.++..+-.||.+ .|++.+..+ ++.|+++..
T Consensus       297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p---~~-l------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s  365 (800)
T 3oc3_A          297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-IT---DS-L------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYR  365 (800)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CS---ST-H------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-ch---hh-H------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHc
Confidence            5778899999999999999999999998887 33   11 1      1356666677776 555555544 788999998


Q ss_pred             CCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHH
Q 012448          156 FPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASV  206 (463)
Q Consensus       156 ~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~  206 (463)
                      +++..  -.++..++  .|-+.+-+.-..||.-|+.++..+.  ..+.+..
T Consensus       366 ~p~~a--~~dp~LVP--RL~PFLRHtITSVR~AVL~TL~tfL--~~~~LRL  410 (800)
T 3oc3_A          366 ENPEL--SIPPERLK--DIFPCFTSPVPEVRTSILNMVKNLS--EESIDFL  410 (800)
T ss_dssp             HCTTC--CCCSGGGG--GTGGGGTCSSHHHHHHHHHHTTTCC--CHHHHHH
T ss_pred             CCccc--ccChHHHH--HHHhhhcCCcHHHHHHHHHHHHHHH--hhhHHHH
Confidence            88632  23457777  7888999999999999999987766  4444444

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=87.07  E-value=4.4  Score=39.88  Aligned_cols=106  Identities=13%  Similarity=0.204  Sum_probs=72.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhh--ccCcHHHHHHhhcC-------CchHHHHHHHHHHHH
Q 012448           82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLI--DYEIYPLLLDCLIN-------GNEEVATASMDAIKK  152 (463)
Q Consensus        82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~--~~~l~~~li~~l~d-------~d~~va~~A~~~L~~  152 (463)
                      ...|. |.....+.||+++.+.|+.+++|+   +. +...+.  .+.++..+...|.+       ..-.+.+.-+.+|..
T Consensus        73 L~nL~-~~~~~~~~~rE~aarII~ssLRNN---P~-Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~  147 (315)
T 3qml_C           73 LANLS-LNENLPLTLRELSTRVITSCLRNN---PP-VVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNE  147 (315)
T ss_dssp             HHHHH-HCTTSCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHH
T ss_pred             HHHHH-hhccCChhHHHHHHHHHHHHHccC---HH-HHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence            34444 566678889999999999999999   66 666443  34455555544433       233677778888998


Q ss_pred             HhCCCCCccccccCCCcchhhHhhHhhcC--CchhHHHHHHHHHHHHh
Q 012448          153 LAGFPNGIDIIFPADNKAATDLGNLVAQC--SSLGRVRVLSLIVKLFS  198 (463)
Q Consensus       153 lak~~~~l~~l~~~~~~~~~~L~~~~~~~--~~~vR~Rv~el~v~ia~  198 (463)
                      |.+.+.-    |......  .|.++....  +..+|.||.+++..+..
T Consensus       148 L~~~~~~----F~~~~m~--~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          148 LPVTSED----LPIYSTV--VLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             SCCCSTT----C--CCHH--HHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HhcChHh----hhhccHH--HHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence            8888621    1222333  455455555  89999999999999985

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=86.71  E-value=0.44  Score=50.95  Aligned_cols=161  Identities=15%  Similarity=0.149  Sum_probs=116.9

Q ss_pred             CcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHH
Q 012448           54 VPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLD  133 (463)
Q Consensus        54 ~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~  133 (463)
                      +--.||+++.+|..+ ...++.   -++...++.++.++.=.||.-++-.+.++   .   +- +.+ +  .++++.++.
T Consensus       241 VAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~---DL-L~~-L--d~Vv~aVL~  306 (800)
T 3oc3_A          241 VAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYL---K---EF-VED-K--DGLCRKLVS  306 (800)
T ss_dssp             BCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---G---GG-CCC-H--HHHHHHHHH
T ss_pred             eeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHH---H---HH-HHH-H--HHHHHHHHh
Confidence            345889999999998 544444   35666777899999999999888888886   1   11 111 1  357889999


Q ss_pred             hhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcC--CchhHHHHHHHHHHHHhcCHHHHHHHHhhc
Q 012448          134 CLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQC--SSLGRVRVLSLIVKLFSVSRSVASVIFKAN  211 (463)
Q Consensus       134 ~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~--~~~vR~Rv~el~v~ia~~S~~~~~~v~~sg  211 (463)
                      +|+|+|..|...|+.+|.-++ .+..+..+++  .++     ..+.+.  =+.---.|.++++.+.++.+   +.+....
T Consensus       307 GL~D~DDDVRAVAAetLiPIA-~p~~l~~LL~--iLW-----d~L~~LDDLSASTgSVMdLLAkL~s~p~---~a~~dp~  375 (800)
T 3oc3_A          307 LLSSPDEDIKLLSAELLCHFP-ITDSLDLVLE--KCW-----KNIESEELISVSKTSNLSLLTKIYRENP---ELSIPPE  375 (800)
T ss_dssp             HTTCSSHHHHHHHHHHHTTSC-CSSTHHHHHH--HHH-----HHHHTCCSCCTTHHHHHHHHHHHHHHCT---TCCCCSG
T ss_pred             hcCCcccHHHHHHHHHhhhhc-chhhHHHHHH--HHH-----HHhhhhcccchhhHHHHHHHHHHHcCCc---ccccChH
Confidence            999999999999999999888 3333333322  122     122222  23345678899999999985   3445568


Q ss_pred             cHHHHHhhcCCCCcHHHHHhHHHHHHHHH
Q 012448          212 LLTLLEEGVSKKNDTLETLSILELLYELA  240 (463)
Q Consensus       212 l~~~ll~eL~~~~DvLv~lnalell~eLa  240 (463)
                      ++|.+.--+.. .=.=||.++++.+..+.
T Consensus       376 LVPRL~PFLRH-tITSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          376 RLKDIFPCFTS-PVPEVRTSILNMVKNLS  403 (800)
T ss_dssp             GGGGTGGGGTC-SSHHHHHHHHHHTTTCC
T ss_pred             HHHHHHhhhcC-CcHHHHHHHHHHHHHHH
Confidence            89999999999 88889999999998766

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=85.15  E-value=57  Score=37.11  Aligned_cols=179  Identities=9%  Similarity=0.082  Sum_probs=102.2

Q ss_pred             chhHHHHH-HHHHHHHhcCHH-HHHHHHhhccHHHHHhhcCCC-CcHHHHHhHHHHHHHHHhhHHH--H-HHHHhcchHH
Q 012448          183 SLGRVRVL-SLIVKLFSVSRS-VASVIFKANLLTLLEEGVSKK-NDTLETLSILELLYELAEIQHS--A-EFLSRTTLLQ  256 (463)
Q Consensus       183 ~~vR~Rv~-el~v~ia~~S~~-~~~~v~~sgl~~~ll~eL~~~-~DvLv~lnalell~eLa~t~~g--~-~~L~~~gi~~  256 (463)
                      +...+|.+ ++++.++....+ ..+     -+++.+-+.+.++ .|--.+=.++=.++.++++...  . .++.  .++.
T Consensus       426 ~~~~f~~~Rd~L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~--~vi~  498 (1023)
T 4hat_C          426 TIQLYKSEREVLVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIK  498 (1023)
T ss_dssp             GHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHH
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH--HHHH
Confidence            34555444 777777765543 222     2344444445542 4666666667777787773322  2 2222  2344


Q ss_pred             HHHHHhcccc---cchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCH
Q 012448          257 LLCSLIGNSA---TETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSI  333 (463)
Q Consensus       257 ~L~~~i~~~~---~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~  333 (463)
                      .|+++.....   ..+.+|+-++.+.|.|.-|      +.. -.+..++.++.+|+.+.++.+.+..+|.||+..|+.. 
T Consensus       499 ~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~w------l~~-~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~-  570 (1023)
T 4hat_C          499 DLLDLCVKKRGKDNKAVVASDIMYVVGQYPRF------LKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK-  570 (1023)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHH------HHH-CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHhhhccccCcchHHHHHHHHHHHHHHHHH------Hhc-cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH-
Confidence            5555554322   2233554555777777653      210 1123667788888888777788999999999999973 


Q ss_pred             HHHHHHhh-c---CchhHHHHHHHHHhhccc---hhhHhHHhhhHHHhcCC
Q 012448          334 QGATLLLL-C---LPPAARHVIDAAFDRQGH---GKQLAALHGLANIAGKT  377 (463)
Q Consensus       334 eGk~~L~~-~---~~~~~~~~l~~~~~~~~~---~~k~r~L~al~~Il~~~  377 (463)
                       .+..+.. +   ..+-+..++..+......   ..+.+..+|++.+....
T Consensus       571 -c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~  620 (1023)
T 4hat_C          571 -CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1023)
T ss_dssp             -HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             -HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence             3333321 1   012345555544444332   22789999999999865

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=85.09  E-value=17  Score=36.16  Aligned_cols=225  Identities=13%  Similarity=0.162  Sum_probs=135.1

Q ss_pred             HHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhH-----HHHHHHHhc-chHHHHHHHhcccccchhhhhhhhh
Q 012448          204 ASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQ-----HSAEFLSRT-TLLQLLCSLIGNSATETILRSRAIM  277 (463)
Q Consensus       204 ~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~-----~g~~~L~~~-gi~~~L~~~i~~~~~dpl~r~~ail  277 (463)
                      ++.+..++++..++..|.. =|.=.|+.+..++.-+-..+     -..+||++. .+++.|+..-.    +|-+    -+
T Consensus        71 ~~ei~~~dll~~Li~~l~~-L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe----~~di----Al  141 (341)
T 1upk_A           71 AQELYNSGLLSTLVADLQL-IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE----SPEI----AL  141 (341)
T ss_dssp             HHHHHHHSHHHHHHHTGGG-SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG----STTT----HH
T ss_pred             HHHHHHhCHHHHHHHhccc-CCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc----cchh----Hh
Confidence            3444566999999999999 99999999999999988833     255788753 44554444432    2221    12


Q ss_pred             Hhhhhccccccchhcchhhhhh--hHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHH
Q 012448          278 ISGRLLSKDDSHMFIDESSAKT--VISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAF  355 (463)
Q Consensus       278 i~g~i~~f~~~~~~~~~~~~k~--~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~  355 (463)
                      ..|-|+-  +.+++  +++.+.  +...+..+|+-++.+.=++..-|+.|+-.+=.+  ||.+...-.......+...|.
T Consensus       142 ~~G~mLR--ecir~--e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~--Hk~lvaefL~~nyd~Ff~~y~  215 (341)
T 1upk_A          142 NCGIMLR--ECIRH--EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR--HKLLSAEFLEQHYDRFFSEYE  215 (341)
T ss_dssp             HHHHHHH--HHHTS--HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS--SHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHH--HHHHh--HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc--cHHHHHHHHHHhHHHHHHHHH
Confidence            2343332  11111  111110  001223456667777777777777777655332  332222211224666777777


Q ss_pred             hhccchh---hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHH
Q 012448          356 DRQGHGK---QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMI  431 (463)
Q Consensus       356 ~~~~~~~---k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l  431 (463)
                      ..+.++.   |.-+|.=|+.|+--.  .+..        .+     ..|-.  +..-+.++|+++ -+-..||.-|++++
T Consensus       216 ~Ll~S~NYVTkRQSlKLLgelLldr--~N~~--------vM-----~~Yis--~~~nLkl~M~LL~d~sk~Iq~EAFhVF  278 (341)
T 1upk_A          216 KLLHSENYVTKRQSLKLLGELLLDR--HNFT--------IM-----TKYIS--KPENLKLMMNLLRDKSRNIQFEAFHVF  278 (341)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHSG--GGHH--------HH-----HHHTT--CHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHhcCCcchhHHHHHHHHHHHHhCc--hHHH--------HH-----HHHhC--CHHHHHHHHHHhcCchhchhhhhhhhe
Confidence            7666644   888888888877622  1111        12     23333  235567899999 99999999999999


Q ss_pred             HHhhcCchh---HHH--hhhccchhHhhcCCCcc
Q 012448          432 TGLVARPWC---LME--LCSKQEIINTVTDASTE  460 (463)
Q Consensus       432 ~~l~~~~Wg---~~~--i~~~~gfie~lldr~~E  460 (463)
                      +--++-|--   +..  +.|...+++|+-+=.+|
T Consensus       279 KvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d  312 (341)
T 1upk_A          279 KVFVANPNKTQPILDILLKNQAKLIEFLSKFQND  312 (341)
T ss_dssp             HHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred             eeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCC
Confidence            998887654   332  23667788877654443

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=83.16  E-value=8.4  Score=36.54  Aligned_cols=140  Identities=9%  Similarity=0.005  Sum_probs=96.3

Q ss_pred             hchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHH-hhcCCchHHHHHHHHHHHHHhC-C
Q 012448           79 PHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLD-CLINGNEEVATASMDAIKKLAG-F  156 (463)
Q Consensus        79 ~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~-~l~d~d~~va~~A~~~L~~lak-~  156 (463)
                      +...+......+|+...||-+|+..+++. . .   ..         ++++++-. -..|+.=.|...+..++.++++ .
T Consensus        70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-~---~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~  135 (240)
T 3l9t_A           70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-K---DK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKI  135 (240)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-T---SH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-C---cH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhc
Confidence            44578888999999999999999999986 2 2   12         35666665 5668888899999999999985 2


Q ss_pred             CCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHH
Q 012448          157 PNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELL  236 (463)
Q Consensus       157 ~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell  236 (463)
                      .+.       ..++  .+.+-..+.|.-||+=+.+..--.++. +.. . -.-.-+++.+.....| ++-.||+++.--|
T Consensus       136 ~pe-------~~l~--~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~-k-~dp~~ll~iL~~L~~D-~s~yVrKSVan~L  202 (240)
T 3l9t_A          136 EYK-------KALP--IIDEWLKSSNLHTRRAATEGLRIWTNR-PYF-K-ENPNEAIRRIADLKED-VSEYVRKSVGNAL  202 (240)
T ss_dssp             CTT-------TTHH--HHHHHHHCSSHHHHHHHHHHTCSGGGS-TTT-T-TCHHHHHHHHHTTTTC-SCHHHHHHHHHHH
T ss_pred             CHH-------HHHH--HHHHHhcCCCHHHHHHHHHhhHHHhcc-chh-h-cCHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Confidence            221       1334  556577778888887766664322222 110 0 0011256666666666 9999999999999


Q ss_pred             HHHHh-hHHH
Q 012448          237 YELAE-IQHS  245 (463)
Q Consensus       237 ~eLa~-t~~g  245 (463)
                      +++++ .|+-
T Consensus       203 rD~SK~~Pd~  212 (240)
T 3l9t_A          203 RDISKKFPDL  212 (240)
T ss_dssp             HHHHTTCHHH
T ss_pred             HHHhhhCHHH
Confidence            99999 4443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=82.97  E-value=10  Score=38.28  Aligned_cols=138  Identities=14%  Similarity=0.099  Sum_probs=92.6

Q ss_pred             HHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhc-----------CCchHHHHHHHHHHHHHhCCCCCcc-ccccCC
Q 012448          100 ACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLI-----------NGNEEVATASMDAIKKLAGFPNGID-IIFPAD  167 (463)
Q Consensus       100 al~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~-----------d~d~~va~~A~~~L~~lak~~~~l~-~l~~~~  167 (463)
                      .+..+...+++..  .. -++-+...| +..++..|.           +.|..+-...+..|+.+..+..|++ ++-.+.
T Consensus        87 ~L~sL~v~Lrt~~--~s-WV~~F~~~G-l~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~  162 (383)
T 3eg5_B           87 CLESLRVSLTSHP--VS-WVQTFGAEG-LASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEE  162 (383)
T ss_dssp             HHHHHHHHHHHSC--HH-HHHHHHHHH-HHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSS
T ss_pred             HHHHHHHHHhhCc--cH-HHHHHHHcc-HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChH
Confidence            3555555555541  22 555555333 344443332           4456677788999999999988996 444556


Q ss_pred             CcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCH-HH-HHH----------HHhhccHHHHHhhcCCCCcHHHHHhHHHH
Q 012448          168 NKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSR-SV-ASV----------IFKANLLTLLEEGVSKKNDTLETLSILEL  235 (463)
Q Consensus       168 ~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~-~~-~~~----------v~~sgl~~~ll~eL~~~~DvLv~lnalel  235 (463)
                      .+.  .|...+...+..+|.-|.++++-++-.+. +- .+.          ..+..-|..++..|+++.++=++.+++.+
T Consensus       163 ~i~--~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~l  240 (383)
T 3eg5_B          163 GIL--LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQL  240 (383)
T ss_dssp             HHH--HHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHH
T ss_pred             HHH--HHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHH
Confidence            665  77767777888999999999999887764 21 222          23445588899999886788888888888


Q ss_pred             HHHHHhhH
Q 012448          236 LYELAEIQ  243 (463)
Q Consensus       236 l~eLa~t~  243 (463)
                      +--+..++
T Consensus       241 IN~li~~~  248 (383)
T 3eg5_B          241 INALITPA  248 (383)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHcCC
Confidence            88777743

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=82.89  E-value=12  Score=39.19  Aligned_cols=132  Identities=13%  Similarity=0.097  Sum_probs=94.8

Q ss_pred             HHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 012448           42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQL  121 (463)
Q Consensus        42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~  121 (463)
                      ..|+..-+. +  +..+..++..+.|.|+  +-+++...-.+.+..-.+..+..||.-|++.+-.+.++ ++...     
T Consensus        32 ~~Il~~~kg-~--~k~K~LaaQ~I~kffk--~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----  100 (507)
T 3u0r_A           32 QVILDGVKG-G--TKEKRLAAQFIPKFFK--HFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----  100 (507)
T ss_dssp             HHHHHGGGS-C--HHHHHHHHHHHHHHGG--GCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----
T ss_pred             HHHHHhcCC-C--HHHHHHHHHHHHHHHh--hChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----
Confidence            445554443 3  5677788889999965  66777778888899999999999999999998887765 33233     


Q ss_pred             hhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448          122 LIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS  198 (463)
Q Consensus       122 ~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~  198 (463)
                           +.-.|+++|+.+|..-....-++|..+.+..+       .+++.  .|-..+.+.++.+|-|++..+..-..
T Consensus       101 -----iaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~--~lf~~i~~~~e~~Rer~lkFi~~kl~  163 (507)
T 3u0r_A          101 -----VADILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLG--GLFSQILQGEDIVRERAIKFLSTKLK  163 (507)
T ss_dssp             -----HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHH--HHHHHHHHSCHHHHHHHHHHHHHHGG
T ss_pred             -----HHHHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHH--HHHHHHcccchHHHHHHHHHHHHHHh
Confidence                 34445678888887777888888888876653       12222  33335566799999999998865443

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=81.53  E-value=59  Score=37.32  Aligned_cols=226  Identities=13%  Similarity=0.153  Sum_probs=129.0

Q ss_pred             CcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh-----cC
Q 012448          126 EIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS-----VS  200 (463)
Q Consensus       126 ~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~-----~S  200 (463)
                      ..+..++.++-+|+.+..+.|-..|..+-+++.+...+..       .|.   .+.+..+|+=...++-+.-+     .+
T Consensus        28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~-------iL~---~s~~~~vR~fAa~~L~~~I~~~W~~L~   97 (1073)
T 3gjx_A           28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDT-------ILE---FSQNMNTKYYGLQILENVIKTRWKILP   97 (1073)
T ss_dssp             HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTC-------C------CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHH-------Hhc---CCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence            4677788899999999999999999998887765442211       111   23577777777776666554     46


Q ss_pred             HHHHHHHHhhccHHHHHhhcCC----CCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhh
Q 012448          201 RSVASVIFKANLLTLLEEGVSK----KNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAI  276 (463)
Q Consensus       201 ~~~~~~v~~sgl~~~ll~eL~~----~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ai  276 (463)
                      ++-.+.+. ..+++.+...-.+    ..|..++--...++..+++..+.-+|   .+.++.|++....   ++...-.++
T Consensus        98 ~e~~~~LR-~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W---p~fi~dLv~~~~~---~~~~~~~~L  170 (1073)
T 3gjx_A           98 RNQCEGIK-KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW---PTFISDIVGASRT---SESLCQNNM  170 (1073)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC---TTHHHHHHHHHHH---CHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc---cHHHHHHHHHhCC---CHHHHHHHH
Confidence            66666554 4677777765433    13566666677888888885433222   3455555555432   221110112


Q ss_pred             hHhhhhccccccchh------------cchhhhhhhHHHHHHHhccc-cCCChhhhhHHHHHHHhhcCCHHHHHHHhhcC
Q 012448          277 MISGRLLSKDDSHMF------------IDESSAKTVISAIDGRLGFL-QSQDSDECESALEALGQIGSSIQGATLLLLCL  343 (463)
Q Consensus       277 li~g~i~~f~~~~~~------------~~~~~~k~~p~~l~~~f~~~-~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~  343 (463)
                      .+...+.-  ++..|            +........|..++.+...+ .++++.....++.|++...+=..--..+ .+ 
T Consensus       171 ~IL~~L~E--EV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~-~~-  246 (1073)
T 3gjx_A          171 VILKLLSE--EVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIF-ET-  246 (1073)
T ss_dssp             HHHHHHHH--HHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHH-SS-
T ss_pred             HHHHHHHH--HHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhc-cc-
Confidence            22111110  11111            00112223555555443333 3456777888999999998854432222 21 


Q ss_pred             chhHHHHHHHH-Hhhccchh-hHhHHhhhHHHhcCC
Q 012448          344 PPAARHVIDAA-FDRQGHGK-QLAALHGLANIAGKT  377 (463)
Q Consensus       344 ~~~~~~~l~~~-~~~~~~~~-k~r~L~al~~Il~~~  377 (463)
                       +    ++..+ +....+.. |..|++||..|++.+
T Consensus       247 -~----ll~~L~~~~L~~~~~r~aA~dcL~eIv~k~  277 (1073)
T 3gjx_A          247 -K----LISTLIYKFLNVPMFRNVSLKCLTEIAGVS  277 (1073)
T ss_dssp             -S----HHHHHHHHTSSSHHHHHHHHHHHHHHHHSC
T ss_pred             -h----HHHHHHHHhcCChHHHHHHHHHHHHHHhcc
Confidence             2    44444 45555544 899999999999864

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=80.56  E-value=3.6  Score=46.76  Aligned_cols=151  Identities=11%  Similarity=0.016  Sum_probs=95.6

Q ss_pred             hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC
Q 012448           78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP  157 (463)
Q Consensus        78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~  157 (463)
                      .+.+...+..++.+.++.++..+++.+++.+.-.   +   ...+++.++++.+..++.++  .+...|++.|..|....
T Consensus       191 ~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi---~---~~~i~~~~ll~~l~~~L~~~--~~r~~A~ecL~ei~~k~  262 (980)
T 3ibv_A          191 VSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI---N---INLIVNEPCMNLLYSFLQIE--ELRCAACETMTEIVNKK  262 (980)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---C---HHHHHCHHHHHHHHHHTTSH--HHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc---C---HHhhhcchHHHHHHHHcCCh--HHHHHHHHHHHHHHHcC
Confidence            3444556667777789999999999999998855   2   23455678999999999985  58889999999986543


Q ss_pred             CCccccccCCCcchh----hHhhHhh-cCCchhHHHHHHHHHHHHhcCHHH---------------HHHHHhhccHHHHH
Q 012448          158 NGIDIIFPADNKAAT----DLGNLVA-QCSSLGRVRVLSLIVKLFSVSRSV---------------ASVIFKANLLTLLE  217 (463)
Q Consensus       158 ~~l~~l~~~~~~~~~----~L~~~~~-~~~~~vR~Rv~el~v~ia~~S~~~---------------~~~v~~sgl~~~ll  217 (463)
                      ...+.  .-..+...    .+..... ..|.....+++.+++.++..-...               ...+  .++++.++
T Consensus       263 ~~~~~--k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l--~~ll~~lL  338 (980)
T 3ibv_A          263 MKPLE--KLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQL--YNLFPYLI  338 (980)
T ss_dssp             CCHHH--HHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHH--HHTHHHHH
T ss_pred             CChhh--HHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHH--HHHHHHHH
Confidence            21100  00000000    1111111 356666677887877665331111               1222  26899999


Q ss_pred             hhcCCCCcHHHHHhHHHHHHHHHh
Q 012448          218 EGVSKKNDTLETLSILELLYELAE  241 (463)
Q Consensus       218 ~eL~~~~DvLv~lnalell~eLa~  241 (463)
                      .++.+ +|.-+-..+++.+.++..
T Consensus       339 ~~~~~-~~deVs~~t~~Fw~~~l~  361 (980)
T 3ibv_A          339 RYLSD-DYDETSTAVFPFLSDLLV  361 (980)
T ss_dssp             HHHTC-SSHHHHHTTHHHHHHHHH
T ss_pred             HHhCC-CchhHHHHHHHHHHHHHH
Confidence            99988 655666678888887775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	463
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	1e-04

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	463
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.69
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.67
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.66
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.64
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.2
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.13
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.04
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.84
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.82
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.79
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.73
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.66
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.59
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.43
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.26
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.23
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.22
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.22
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.18
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.14
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.12
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.11
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.97
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.17
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.01
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	93.52
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	89.39
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	86.1
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	83.5

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=5.3e-15  Score=147.30  Aligned_cols=393  Identities=12%  Similarity=0.066  Sum_probs=281.8

Q ss_pred             CCCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-----chhh
Q 012448            5 LSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-----SLIP   79 (463)
Q Consensus         5 ~~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-----~l~~   79 (463)
                      +..+|++.-++|+..+.+.-..-++...+++++...+|.|+..|++.+ .+..+..++.+|..+-  .+..     ....
T Consensus        22 l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~v~~~a~~~L~~la--~~~~~~~~~i~~~   98 (434)
T d1q1sc_          22 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-CSPIQFESAWALTNIA--SGTSEQTKAVVDG   98 (434)
T ss_dssp             HTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGG-GHHHHHHHHHHHHHHH--TSCHHHHHHHHHT
T ss_pred             HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCC-CHHHHHHHHHHHHHHh--cCChhhhhHhhhc
Confidence            456788888888777764311112223567788889999999997543 3566777888998883  3222     2345


Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchH-----HHHHHHHHHHHHh
Q 012448           80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEE-----VATASMDAIKKLA  154 (463)
Q Consensus        80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~-----va~~A~~~L~~la  154 (463)
                      ++.+.+...|.++++.+|+.++++++++..++   .. ..+.+.+.+.++.++..+..++..     ..+.++..+..++
T Consensus        99 ~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~---~~-~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~  174 (434)
T d1q1sc_          99 GAIPAFISLLASPHAHISEQAVWALGNIAGDG---SA-FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  174 (434)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHT
T ss_pred             cchhhhhhccccCCHHHHHHHHHHHHHHhccc---hH-HHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHh
Confidence            67899999999999999999999999999877   55 778888999999999988776643     3455677788888


Q ss_pred             CCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHH
Q 012448          155 GFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSIL  233 (463)
Q Consensus       155 k~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnal  233 (463)
                      ...+.. +.....+.++  .|...+.+.++.++..++.++..++.++.+....+.+.|+++.++..+++ +|.-++.+++
T Consensus       175 ~~~~~~~~~~~~~~~l~--~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~-~~~~~~~~al  251 (434)
T d1q1sc_         175 RNKNPAPPLDAVEQILP--TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-TELPIVTPAL  251 (434)
T ss_dssp             CCCTTCCCHHHHHHHHH--HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC-SCHHHHHHHH
T ss_pred             hcccccchhhhhhhHHH--HHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhccccccc-chhhhhhchh
Confidence            776533 2223344555  56667778899999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccc-cc-hhcchhhhhhhHHHHHHHhcc
Q 012448          234 ELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDD-SH-MFIDESSAKTVISAIDGRLGF  310 (463)
Q Consensus       234 ell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~-~~-~~~~~~~~k~~p~~l~~~f~~  310 (463)
                      .++..++. +++...++.+.|+++.|..++.+  .++-++..++.+.+-+..... .. .+.+   .+.+|.+++    .
T Consensus       252 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~---~~~i~~li~----~  322 (434)
T d1q1sc_         252 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN--PKTNIQKEATWTMSNITAGRQDQIQQVVN---HGLVPFLVG----V  322 (434)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHH---TTCHHHHHH----H
T ss_pred             hhhhhHHhhhhHHHHHHHhccccchHHHhhcc--cchhhhHHHHHHHhhhccccchhHHHHhh---hhhHHHHHH----H
Confidence            99999998 77889999999999999999875  455566677766666554211 11 1121   233555555    4


Q ss_pred             ccCCChhhhhHHHHHHHhhcC--CHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhh
Q 012448          311 LQSQDSDECESALEALGQIGS--SIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNAD  388 (463)
Q Consensus       311 ~~~~d~~~~~~A~dtlG~Igs--s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~  388 (463)
                      +.+++..++..|+|+++.+..  +.+....+.+.  +.+..+++.. +.-....+..+++++.+|+...  +  .  ..+
T Consensus       323 l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~--~~i~~L~~ll-~~~d~~~~~~~l~~l~~ll~~~--~--~--~~~  393 (434)
T d1q1sc_         323 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC--GIIEPLMNLL-SAKDTKIIQVILDAISNIFQAA--E--K--LGE  393 (434)
T ss_dssp             HHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT--TCHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHH--H--T--TTC
T ss_pred             HhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHC--CcHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHH--H--h--cCC
Confidence            567889999999999998864  66666666553  3444444322 2111122778899999998743  1  0  111


Q ss_pred             HHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHH
Q 012448          389 AEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITG  433 (463)
Q Consensus       389 ~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~  433 (463)
                      .+. +.... +...      -.+.+-.+. .+-+|+|-.|..++.-
T Consensus       394 ~~~-~~~~~-~~~~------~~~~i~~L~~~~n~~i~~~a~~il~~  431 (434)
T d1q1sc_         394 TEK-LSIMI-EECG------GLDKIEALQRHENESVYKASLNLIEK  431 (434)
T ss_dssp             HHH-HHHHH-HHTT------SHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             cHH-HHHHH-HHcC------CHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            222 44343 4322      255677777 8899999999988864

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=3e-14  Score=146.15  Aligned_cols=400  Identities=14%  Similarity=0.102  Sum_probs=283.4

Q ss_pred             CCCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc--c-hhhch
Q 012448            5 LSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA--S-LIPHY   81 (463)
Q Consensus         5 ~~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~--~-l~~~~   81 (463)
                      +..+|....+++...+.+.-....+.....+++...+|.|+..|+... .+..+..++.+|..+.......  . .....
T Consensus        85 ~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~-~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~  163 (503)
T d1wa5b_          85 LNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQTKVVVDADA  163 (503)
T ss_dssp             HSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred             hcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHhCCC
Confidence            345677777777777765443334555778899999999999998643 3566777888888874321111  1 23346


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-
Q 012448           82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-  160 (463)
Q Consensus        82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-  160 (463)
                      .+.+...|+++++.|++.++|.++.++...   .. ..+.+.+.++++.++.++.+++..+.+.++.+|..++++.+.. 
T Consensus       164 i~~l~~lL~s~~~~i~~~a~~~L~nia~~~---~~-~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~  239 (503)
T d1wa5b_         164 VPLFIQLLYTGSVEVKEQAIWALGNVAGDS---TD-YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP  239 (503)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             hHHHHHHhcCCChhHHHHHHHHHHHHhhhh---HH-HHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccch
Confidence            899999999999999999999999999876   56 7788899999999999999999999999999999999876533 


Q ss_pred             cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHH
Q 012448          161 DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELA  240 (463)
Q Consensus       161 ~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa  240 (463)
                      +.....+.++  .|...+.+.|..++..++.++..++..+++..+.+.++|+++.++..+++ +|.-++.+++..+..++
T Consensus       240 ~~~~~~~~l~--~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~l~nl~  316 (503)
T d1wa5b_         240 DWSVVSQALP--TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH-ESTLVQTPALRAVGNIV  316 (503)
T ss_dssp             CHHHHGGGHH--HHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH--HHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccC-CchhhhhhHHHHHHHHH
Confidence            3333445666  67778888999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             h-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccc-cc-hhcchhhhhhhHHHHHHHhccccCCChh
Q 012448          241 E-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDD-SH-MFIDESSAKTVISAIDGRLGFLQSQDSD  317 (463)
Q Consensus       241 ~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~-~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~~  317 (463)
                      . +..-...+.+.|+++.|..++.+  .++-++..++.+.+-+..... .. .++   -.+.+|.+++    .+.+.+..
T Consensus       317 ~~~~~~~~~~~~~~~l~~l~~ll~~--~~~~i~~~~~~~l~nl~~~~~~~~~~i~---~~~~l~~li~----~l~~~~~~  387 (503)
T d1wa5b_         317 TGNDLQTQVVINAGVLPALRLLLSS--PKENIKKEACWTISNITAGNTEQIQAVI---DANLIPPLVK----LLEVAEYK  387 (503)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHH---HTTCHHHHHH----HHHHSCHH
T ss_pred             HHHHHHHHhhhccchHHHHHHHhcC--CCHHHHHHHHHHHHHHhhccHHHHHHHH---HccccchhHH----hcccCChh
Confidence            8 67777889999999999998865  355556666666666654211 11 112   1233455444    45678889


Q ss_pred             hhhHHHHHHHhhcCC----HHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhh-hHHHH
Q 012448          318 ECESALEALGQIGSS----IQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNA-DAEES  392 (463)
Q Consensus       318 ~~~~A~dtlG~Igss----~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~-~~e~~  392 (463)
                      ++..|+|+++++.+.    .+....|..  .+.+..++... +..-......+|+++.+|+...  +....... .... 
T Consensus       388 v~~~a~~~l~nl~~~~~~~~~~~~~l~~--~~~l~~l~~~L-~~~d~~~~~~~L~~l~~ll~~~--~~~~~~~~~~~~~-  461 (503)
T d1wa5b_         388 TKKEACWAISNASSGGLQRPDIIRYLVS--QGCIKPLCDLL-EIADNRIIEVTLDALENILKMG--EADKEARGLNINE-  461 (503)
T ss_dssp             HHHHHHHHHHHHHHHTTTCTHHHHHHHH--TTCHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHH--HHHHHHHTCSSCH-
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHH--CCcHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHH--HHHhhhhcccchH-
Confidence            999999999998752    233333433  23444443332 2111122667899999998643  11000000 0001 


Q ss_pred             HHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHh
Q 012448          393 LRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGL  434 (463)
Q Consensus       393 l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l  434 (463)
                      ...++ +..      .-.+.+..+. .|-++++--|+.++..-
T Consensus       462 ~~~~i-ee~------g~~~~i~~Lq~~~~~~i~~~A~~il~~~  497 (503)
T d1wa5b_         462 NADFI-EKA------GGMEKIFNCQQNENDKIYEKAYKIIETY  497 (503)
T ss_dssp             HHHHH-HHT------THHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHC------CCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            12222 221      1244455555 67889998898888653

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=4.7e-14  Score=144.60  Aligned_cols=363  Identities=12%  Similarity=0.103  Sum_probs=270.7

Q ss_pred             hcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---c-hhhchHHHHHHhhcC-CCHHHHHHHHHHHHHHHhCC
Q 012448           37 DRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---S-LIPHYMPFVQVGLTA-DSHSVKRLACKTVTCLLEDS  111 (463)
Q Consensus        37 ~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~-l~~~~~~~l~~gL~h-~~~~Vr~Lal~~l~~i~~~~  111 (463)
                      ....++.++..+++.+  ....-.++..++++++.....   . +...+.+.|+..|.+ .++.++..+++.++.+..+.
T Consensus        74 ~~~~l~~~~~~~~s~~--~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~  151 (503)
T d1wa5b_          74 LQQELPQMTQQLNSDD--MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT  151 (503)
T ss_dssp             --CCHHHHHHHHSCSS--HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC
Confidence            3456899999998766  555567777899988544332   2 234578899999975 57889999999999998776


Q ss_pred             chhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHH
Q 012448          112 DLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVL  190 (463)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~  190 (463)
                         .. ....+.+.|+++.++..+.+++..+...|+.+|..|+...+.. +.+...+.++  .|.+.+...+..++..+.
T Consensus       152 ---~~-~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~--~L~~ll~~~~~~~~~~~~  225 (503)
T d1wa5b_         152 ---SA-QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME--PILGLFNSNKPSLIRTAT  225 (503)
T ss_dssp             ---HH-HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH--HHHHGGGSCCHHHHHHHH
T ss_pred             ---HH-HHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccc--cchhhcccCCHHHHHHHH
Confidence               55 6778889999999999999999999999999999999887655 6777888888  777788888889999999


Q ss_pred             HHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccch
Q 012448          191 SLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATET  269 (463)
Q Consensus       191 el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dp  269 (463)
                      .++.+++++.....+.....++++.+...+.+ +|.-++.+++..+..++. .+...+.+.+.|++..|+..+..  .++
T Consensus       226 ~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~-~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~  302 (503)
T d1wa5b_         226 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH--EST  302 (503)
T ss_dssp             HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC--SCH
T ss_pred             HHHHHHhcCCccchHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccC--Cch
Confidence            99999998876666666778999999999999 999999999999999998 77788999999999999999875  466


Q ss_pred             hhhhhhhhHhhhhccccc-cchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhcCchhH
Q 012448          270 ILRSRAIMISGRLLSKDD-SHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLCLPPAA  347 (463)
Q Consensus       270 l~r~~aili~g~i~~f~~-~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~~~  347 (463)
                      .++.+++.+.|.+....+ ...++   ...+   +++.+..+++++++.++..|+|++++++. +.+....+..  .+.+
T Consensus       303 ~v~~~al~~l~nl~~~~~~~~~~~---~~~~---~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~--~~~l  374 (503)
T d1wa5b_         303 LVQTPALRAVGNIVTGNDLQTQVV---INAG---VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID--ANLI  374 (503)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHH---HHTT---HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTCH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhh---hccc---hHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHH--cccc
Confidence            677788888887775211 11111   1112   23333446788999999999999999987 5666666654  2455


Q ss_pred             HHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHH
Q 012448          348 RHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLA  426 (463)
Q Consensus       348 ~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A  426 (463)
                      ..++..+... ....|..+..+++++.....        +..+. +..++ +       ...+..+.+++ .+.+++..+
T Consensus       375 ~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~--------~~~~~-~~~l~-~-------~~~l~~l~~~L~~~d~~~~~~  436 (503)
T d1wa5b_         375 PPLVKLLEVA-EYKTKKEACWAISNASSGGL--------QRPDI-IRYLV-S-------QGCIKPLCDLLEIADNRIIEV  436 (503)
T ss_dssp             HHHHHHHHHS-CHHHHHHHHHHHHHHHHHTT--------TCTHH-HHHHH-H-------TTCHHHHHHHTTTCCHHHHHH
T ss_pred             chhHHhcccC-ChhHHHHHHHHHHHHHhccc--------ccHHH-HHHHH-H-------CCcHHHHHHHhcCCCHHHHHH
Confidence            5554444322 22227788888888876321        11111 23233 1       24456677777 678999998


Q ss_pred             HHHHHHHhhc
Q 012448          427 GYRMITGLVA  436 (463)
Q Consensus       427 ~~~~l~~l~~  436 (463)
                      ++..+..|..
T Consensus       437 ~L~~l~~ll~  446 (503)
T d1wa5b_         437 TLDALENILK  446 (503)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888777764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.4e-14  Score=145.53  Aligned_cols=375  Identities=11%  Similarity=0.064  Sum_probs=278.0

Q ss_pred             CChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---ch--hhchHHHHHHhhcCC-CHHHHHHHHHHHHHHHhCCc
Q 012448           39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---SL--IPHYMPFVQVGLTAD-SHSVKRLACKTVTCLLEDSD  112 (463)
Q Consensus        39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~l--~~~~~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~~  112 (463)
                      --+|.|+..|++.+  +..+..++.+|..+-  .+..   .+  .+++.+.+...|.++ ++.+++.++..+..+..+. 
T Consensus        17 ~aip~L~~lL~~~~--~~v~~~A~~~l~~l~--~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~-   91 (529)
T d1jdha_          17 RAIPELTKLLNDED--QVVVNKAAVMVHQLS--KKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-   91 (529)
T ss_dssp             CHHHHHHHHHTCSC--HHHHHHHHHHHHHHH--TSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH-
T ss_pred             HHHHHHHHHHcCCC--HHHHHHHHHHHHHHH--hccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-
Confidence            34789999998765  788889999998883  3322   12  245688999999875 6899999999999987644 


Q ss_pred             hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHH
Q 012448          113 LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLS  191 (463)
Q Consensus       113 ~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~e  191 (463)
                         . ..+.+++.|.++.++.+|.+++..+...|+.+|..++.+.++. +.+...+.++  .|..++.+.+..++..+..
T Consensus        92 ---~-~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~--~Lv~lL~~~~~~~~~~a~~  165 (529)
T d1jdha_          92 ---E-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ--KMVALLNKTNVKFLAITTD  165 (529)
T ss_dssp             ---H-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHH--HHHHGGGCCCHHHHHHHHH
T ss_pred             ---h-hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCch--HHHHHHHccChHHHHHHHH
Confidence               4 5577888899999999999999999999999999999988866 4566888888  8887888999999999999


Q ss_pred             HHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhh
Q 012448          192 LIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETIL  271 (463)
Q Consensus       192 l~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~  271 (463)
                      ++..++..+.+.-..+.+.|.++.++..+...++.-++.++..++..++..++..+.+.+.|++..|+..+.+.  ++-+
T Consensus       166 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~--~~~~  243 (529)
T d1jdha_         166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQRL  243 (529)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS--CHHH
T ss_pred             HHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhccc--chhh
Confidence            99999999999989999999999999999765777889999999999999999999999999999999988653  3322


Q ss_pred             hhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhcCchhHHHH
Q 012448          272 RSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLCLPPAARHV  350 (463)
Q Consensus       272 r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~~~~~~  350 (463)
                      +..+......+... ......   .....|.    +.+++.++|+..+..|.++|+.+++ +.+.+..+.+  ......+
T Consensus       244 ~~~a~~~l~~ls~~-~~~~~~---~~~~i~~----Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~~~i~~L  313 (529)
T d1jdha_         244 VQNCLWTLRNLSDA-ATKQEG---MEGLLGT----LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ--VGGIEAL  313 (529)
T ss_dssp             HHHHHHHHHHHHTT-CTTCSC---CHHHHHH----HHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHH--TTHHHHH
T ss_pred             hhhhhhHHHhcccc-ccchhh---hhhcchh----hhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHH--hhhHHHH
Confidence            32333222222211 111111   1232344    3345678999999999999999987 5666777665  3556666


Q ss_pred             HHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cC-CHHHHHHH
Q 012448          351 IDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQ-AAEIRLAG  427 (463)
Q Consensus       351 l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qp-F~elr~A~  427 (463)
                      +..+.....+.. +..+..++.++....  +       ..+. ....+ ..      ......++.+. .| -.+++.++
T Consensus       314 i~~l~~~~~~~~~~~~a~~aL~~l~~~~--~-------~~~~-~~~~i-~~------~~~l~~L~~ll~~~~~~~~~~~~  376 (529)
T d1jdha_         314 VRTVLRAGDREDITEPAICALRHLTSRH--Q-------EAEM-AQNAV-RL------HYGLPVVVKLLHPPSHWPLIKAT  376 (529)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTSSS--T-------THHH-HHHHH-HH------TTCHHHHHHTTSTTCCHHHHHHH
T ss_pred             HHHHHhhhcchhHHHHHHHHhhcccchh--h-------cchh-hhhhH-Hh------cccchhHHHHHhccchHHHHHHH
Confidence            666655444333 667888898888643  1       1121 22122 11      23356677777 44 45688899


Q ss_pred             HHHHHHhhcCchhHHHhhhccchhHhh
Q 012448          428 YRMITGLVARPWCLMELCSKQEIINTV  454 (463)
Q Consensus       428 ~~~l~~l~~~~Wg~~~i~~~~gfie~l  454 (463)
                      ..++..++..++....+.. .|+++.+
T Consensus       377 ~~~l~~l~~~~~~~~~l~~-~g~i~~L  402 (529)
T d1jdha_         377 VGLIRNLALCPANHAPLRE-QGAIPRL  402 (529)
T ss_dssp             HHHHHHHTTSGGGHHHHHH-TTHHHHH
T ss_pred             HHHHhhcchhhhhhhhhhh-cccHHHH
Confidence            9999999999998877776 4555444

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=4.9e-14  Score=140.19  Aligned_cols=359  Identities=13%  Similarity=0.125  Sum_probs=258.8

Q ss_pred             cCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---chh-hchHHHHHHhhcC-CCHHHHHHHHHHHHHHHhCCc
Q 012448           38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---SLI-PHYMPFVQVGLTA-DSHSVKRLACKTVTCLLEDSD  112 (463)
Q Consensus        38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~l~-~~~~~~l~~gL~h-~~~~Vr~Lal~~l~~i~~~~~  112 (463)
                      +.-+..|+..|++.|  ++.+.+++..|+++++.....   .+. ..+.+.|++.|++ +++.||..+++++..++.+. 
T Consensus        12 ~~~i~~lv~~l~s~~--~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-   88 (434)
T d1q1sc_          12 NWSVEDIVKGINSNN--LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-   88 (434)
T ss_dssp             SCCHHHHHHHHTSSC--HHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-
T ss_pred             hhhHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-
Confidence            355788899999877  777888888999887533332   232 3579999999975 46889999999999998877 


Q ss_pred             hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCch-----hH
Q 012448          113 LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSL-----GR  186 (463)
Q Consensus       113 ~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~-----vR  186 (463)
                        .. ..+.+++.|+++.++..+.+++..+...|+.+|.+++...+.. +.+...+.+.  .|...+...+..     ..
T Consensus        89 --~~-~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~--~l~~~l~~~~~~~~~~~~~  163 (434)
T d1q1sc_          89 --SE-QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAID--PLLALLAVPDLSTLACGYL  163 (434)
T ss_dssp             --HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH--HHHHHTCSSCGGGSCHHHH
T ss_pred             --hh-hhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhh--HHHHHHHhcccccchHHHH
Confidence              55 6778889999999999999999999999999999999887655 5677777777  666555444322     22


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhccc
Q 012448          187 VRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNS  265 (463)
Q Consensus       187 ~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~  265 (463)
                      ..+..++.+++.............++++.+...+++ +|.-++.+++..+..++. .+.....+...|++..|++.+.. 
T Consensus       164 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~-  241 (434)
T d1q1sc_         164 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-  241 (434)
T ss_dssp             HHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhc-cccchhhhHHhhhcccchhhhhhHHHHhhcccchhccccccc-
Confidence            345556777777666555555667899999999988 999999999999999998 56677888899999999999875 


Q ss_pred             ccchhhhhhhhhHhhhhccccc-cc-hhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhc
Q 012448          266 ATETILRSRAIMISGRLLSKDD-SH-MFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLC  342 (463)
Q Consensus       266 ~~dpl~r~~aili~g~i~~f~~-~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~  342 (463)
                       .++-++..++.+.+.+..... .. .+++   .+..+.    +...+++.++.++..|+|+|+.++. +.+.+..+...
T Consensus       242 -~~~~~~~~al~~l~~l~~~~~~~~~~~~~---~~~~~~----l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~  313 (434)
T d1q1sc_         242 -TELPIVTPALRAIGNIVTGTDEQTQKVID---AGALAV----FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH  313 (434)
T ss_dssp             -SCHHHHHHHHHHHHHHTTSCHHHHHHHHH---TTGGGG----HHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             -chhhhhhchhhhhhhHHhhhhHHHHHHHh---ccccch----HHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhh
Confidence             345556677777666654211 11 1111   121222    3335678899999999999999997 45556666553


Q ss_pred             CchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCH
Q 012448          343 LPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAA  421 (463)
Q Consensus       343 ~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~  421 (463)
                        +.+..++..+... ....|..+..+++++......          + .+..++ +       ......+..+. .+.+
T Consensus       314 --~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~----------~-~~~~l~-~-------~~~i~~L~~ll~~~d~  371 (434)
T d1q1sc_         314 --GLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTV----------E-QIVYLV-H-------CGIIEPLMNLLSAKDT  371 (434)
T ss_dssp             --TCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCH----------H-HHHHHH-H-------TTCHHHHHHHTTSSCH
T ss_pred             --hhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCH----------H-HHHHHH-H-------CCcHHHHHHHhcCCCH
Confidence              4555555554322 222288889999998864311          1 122233 2       24466777777 7899


Q ss_pred             HHHHHHHHHHHHhhc
Q 012448          422 EIRLAGYRMITGLVA  436 (463)
Q Consensus       422 elr~A~~~~l~~l~~  436 (463)
                      +++.++++.+..+..
T Consensus       372 ~~~~~~l~~l~~ll~  386 (434)
T d1q1sc_         372 KIIQVILDAISNIFQ  386 (434)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988888764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.2e-13  Score=138.11  Aligned_cols=421  Identities=10%  Similarity=0.034  Sum_probs=280.6

Q ss_pred             CChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---chhhchHHH
Q 012448            8 DDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---SLIPHYMPF   84 (463)
Q Consensus         8 ~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~l~~~~~~~   84 (463)
                      +|+...-.++.-+.+-  +.+++....+++...+|.|+.+|++.+  +..+..++.+|..+.......   .......+.
T Consensus        72 ~~~~~~~~a~~~L~~l--~~~~~~~~~i~~~g~i~~Li~lL~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~  147 (529)
T d1jdha_          72 NDVETARCTAGTLHNL--SHHREGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQK  147 (529)
T ss_dssp             CCHHHHHHHHHHHHHH--TTSHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHH
T ss_pred             CCHHHHHHHHHHHHHH--hCCchhHHHHHHCCCHHHHHHHhCCCC--HHHHHHHHHHHHHhhcccchhhhHHHhcCCchH
Confidence            3444444445555444  346788889999999999999998866  778888888888774322221   124456889


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCc-hHHHHHHHHHHHHHhCCCCCcccc
Q 012448           85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGN-EEVATASMDAIKKLAGFPNGIDII  163 (463)
Q Consensus        85 l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d-~~va~~A~~~L~~lak~~~~l~~l  163 (463)
                      |..-|+++++.++..+++.++.+..++   .. ....+.+.+.++.++..+...+ ..+...++.++..++..+..-+.+
T Consensus       148 Lv~lL~~~~~~~~~~a~~~L~~l~~~~---~~-~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~  223 (529)
T d1jdha_         148 MVALLNKTNVKFLAITTDCLQILAYGN---QE-SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI  223 (529)
T ss_dssp             HHHGGGCCCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred             HHHHHHccChHHHHHHHHHHHHHhhhh---hH-HHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchh
Confidence            999999999999999999999998776   44 5567788899999999886655 578888999999999877655677


Q ss_pred             ccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-h
Q 012448          164 FPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-I  242 (463)
Q Consensus       164 ~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t  242 (463)
                      ++.+.++  .|.+.+.+.+..++..++..+.+++......   ....|.++.++.-+++ +|.-++.+++.+|..++. +
T Consensus       224 ~~~g~~~--~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~-~~~~~~~~a~~~L~~l~~~~  297 (529)
T d1jdha_         224 VEAGGMQ--ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNN  297 (529)
T ss_dssp             HHTTHHH--HHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTTC
T ss_pred             hhhhhhh--hHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhccc-ccHHHHHHHHHHHHhhccch
Confidence            7888877  7777888888889988888888887665432   2335889999999998 999999999999999998 7


Q ss_pred             HHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchh--hhhhhHHHHHHHhccccC-CChhhh
Q 012448          243 QHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDES--SAKTVISAIDGRLGFLQS-QDSDEC  319 (463)
Q Consensus       243 ~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~--~~k~~p~~l~~~f~~~~~-~d~~~~  319 (463)
                      +...+.+.+.|++..|+..+......+-+...++.+.+.+.....-.......  ..++.+.+++    ++.. .+....
T Consensus       298 ~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~----ll~~~~~~~~~  373 (529)
T d1jdha_         298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK----LLHPPSHWPLI  373 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHH----TTSTTCCHHHH
T ss_pred             hHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHH----HHhccchHHHH
Confidence            77778889999999999999766655554555665555554311110000010  1233445444    3333 445778


Q ss_pred             hHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHH
Q 012448          320 ESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYE  399 (463)
Q Consensus       320 ~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye  399 (463)
                      .+++++++.++.+.+.+..+.+.  +....+++....... ..+.++..+....-......        .++ +...+..
T Consensus       374 ~~~~~~l~~l~~~~~~~~~l~~~--g~i~~L~~lL~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~  441 (529)
T d1jdha_         374 KATVGLIRNLALCPANHAPLREQ--GAIPRLVQLLVRAHQ-DTQRRTSMGGTQQQFVEGVR--------MEE-IVEGCTG  441 (529)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHT--THHHHHHHHHHHHHH-HHC-----------CBTTBC--------HHH-HHHHHHH
T ss_pred             HHHHHHHhhcchhhhhhhhhhhc--ccHHHHHHHHhcCCH-HHHHHHHhhhhhHHhhcccc--------hHH-HHHHHHH
Confidence            89999999999988887777763  444544444433211 11222222211111111000        111 1111111


Q ss_pred             HHhhCC----------CCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhhhccc---hhHhhcCCC
Q 012448          400 VASRSS----------KLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELCSKQE---IINTVTDAS  458 (463)
Q Consensus       400 ~~~~~~----------~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~~g---fie~lldr~  458 (463)
                      +++...          ...-...+..++ ++-+++|.++..+|..++.++=+.+.|.+..+   +++.+-+++
T Consensus       442 al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n  514 (529)
T d1jdha_         442 ALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN  514 (529)
T ss_dssp             HHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSS
T ss_pred             HHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCC
Confidence            111100          022345678888 99999999999999999988777776666555   445544443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.7e-11  Score=113.90  Aligned_cols=364  Identities=11%  Similarity=0.031  Sum_probs=214.3

Q ss_pred             CChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc-----hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCch
Q 012448           39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS-----LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDL  113 (463)
Q Consensus        39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-----l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~  113 (463)
                      .-+|.|+..|++.+  +..+..++.+|..+  ......     ......+.|+..|+|+++.||+.+++++++++.++  
T Consensus         2 ~~ip~lv~~L~~~~--~~~~~~a~~~l~~l--~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~--   75 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD--EKYQAIGAYYIQHT--CFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS--   75 (457)
T ss_dssp             CCHHHHHHHHHSSC--THHHHHHHHHHHHH--TSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC--
T ss_pred             CCHHHHHHHhCCCC--HHHHHHHHHHHHHH--HcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC--
Confidence            45799999999877  88999999999987  332222     23345788999999999999999999999999776  


Q ss_pred             hHHHHHHHhhccCcHHHHHHhhc-CCchHHHHHHHHHHHHHhCCCCCccccccCCCcc-------------hhhHhhHhh
Q 012448          114 EASCALQLLIDYEIYPLLLDCLI-NGNEEVATASMDAIKKLAGFPNGIDIIFPADNKA-------------ATDLGNLVA  179 (463)
Q Consensus       114 ~~~~~~~~~~~~~l~~~li~~l~-d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~-------------~~~L~~~~~  179 (463)
                       +. ....+.+.|.++.++..+. +.+..+...|..+|..++............+...             .........
T Consensus        76 -~~-~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  153 (457)
T d1xm9a1          76 -TT-NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSRE  153 (457)
T ss_dssp             -HH-HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------
T ss_pred             -HH-HHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcc
Confidence             55 6678888899999998664 5677889999999999998764332222111111             000011123


Q ss_pred             cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCC-----CCcHHHHHhHHHHHHHH---------------
Q 012448          180 QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSK-----KNDTLETLSILELLYEL---------------  239 (463)
Q Consensus       180 ~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~-----~~DvLv~lnalell~eL---------------  239 (463)
                      ..+..++..+..++..++...+..-..+...|+++.++.-+.+     ..+.....+++..+...               
T Consensus       154 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  233 (457)
T d1xm9a1         154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL  233 (457)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence            4577788888888888887766666666667877777654432     01222222222222221               


Q ss_pred             Hh------------------------------------hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhc
Q 012448          240 AE------------------------------------IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLL  283 (463)
Q Consensus       240 a~------------------------------------t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~  283 (463)
                      ..                                    .+.....+...+++..++....... +|.....+..+.+.+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~-~~~~~~~~~~~l~~l~  312 (457)
T d1xm9a1         234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK-KDATLEACAGALQNLT  312 (457)
T ss_dssp             HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHT
T ss_pred             HhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhccc-chHHHHHHHHHHHHHh
Confidence            11                                    0011111122233333433333222 2211111122222221


Q ss_pred             cccccchh-cchh---hhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhcc
Q 012448          284 SKDDSHMF-IDES---SAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQG  359 (463)
Q Consensus       284 ~f~~~~~~-~~~~---~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~  359 (463)
                      ........ ..+.   ..+..|.++    +++.++++.++..|.++++.++.+.+.+..+...   .+..++........
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~l~~L~----~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~---~i~~li~~L~~~~~  385 (457)
T d1xm9a1         313 ASKGLMSSGMSQLIGLKEKGLPQIA----RLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQ---VFPEVTRLLTSHTG  385 (457)
T ss_dssp             TCSSSHHHHHHHHHHTTSCCHHHHH----HHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHH---THHHHHHTTTSCCS
T ss_pred             hccccchHHHHHHHHHHcCChHHHH----hhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHh---hHHHHHHHHhcccc
Confidence            10000000 0000   122344433    4678899999999999999999999988877643   44555544433322


Q ss_pred             c---hh--hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-c-CCHHHHHHHHHHHH
Q 012448          360 H---GK--QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-Q-QAAEIRLAGYRMIT  432 (463)
Q Consensus       360 ~---~~--k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-q-pF~elr~A~~~~l~  432 (463)
                      .   ..  +..++.++.++....  +.           .++.+.+.       .-...++.++ . .-++++.||..+|.
T Consensus       386 ~~~~~~~v~~~a~~~L~~l~~~~--~~-----------~~~~l~~~-------g~i~~L~~l~~~~~~~~~~~aA~~~L~  445 (457)
T d1xm9a1         386 NTSNSEDILSSACYTVRNLMASQ--PQ-----------LAKQYFSS-------SMLNNIINLCRSSASPKAAEAARLLLS  445 (457)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHTTC--TH-----------HHHHHCCH-------HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CcCCcHHHHHHHHHHHHHHhcCC--HH-----------HHHHHHHC-------CCHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            2   11  667888888887533  21           11111011       2245667776 4 46899999999999


Q ss_pred             HhhcCc
Q 012448          433 GLVARP  438 (463)
Q Consensus       433 ~l~~~~  438 (463)
                      .|+.++
T Consensus       446 ~L~~~~  451 (457)
T d1xm9a1         446 DMWSSK  451 (457)
T ss_dssp             TTSSST
T ss_pred             HHHcCH
Confidence            997664

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=7.2e-11  Score=111.64  Aligned_cols=188  Identities=13%  Similarity=0.061  Sum_probs=156.2

Q ss_pred             chHHHHHHHHHHHhccccccc-h-hhc-hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHH
Q 012448           56 GLEDTLVVCLERIFKTKYGAS-L-IPH-YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLL  132 (463)
Q Consensus        56 ~~~~~~~~vL~~il~~~~~~~-l-~~~-~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li  132 (463)
                      +.++.+...|..+....+.+. + ... +...+...|+|+++.||..+++.++++..++   .. ..+.+...+.++.++
T Consensus        32 ~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~---~~-~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          32 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV---AA-IQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HH-HHHHHHHcCchHHHH
Confidence            345566667888755433332 1 112 2444557899999999999999999999988   65 777888899999999


Q ss_pred             Hhhc-CCchHHHHHHHHHHHHHhCCCCC-ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhh
Q 012448          133 DCLI-NGNEEVATASMDAIKKLAGFPNG-IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKA  210 (463)
Q Consensus       133 ~~l~-d~d~~va~~A~~~L~~lak~~~~-l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~s  210 (463)
                      ..+. +++..+...|+.+|..++++.+. ...+...+.++  .|.+.+.+.+..++.+++.++.+++..+++..+.+.+.
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~--~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  185 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFS--VLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH--HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhh--HHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence            9996 67888999999999999988874 46677888888  88889999999999999999999999999999999999


Q ss_pred             ccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHH
Q 012448          211 NLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLS  250 (463)
Q Consensus       211 gl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~  250 (463)
                      |.++.++.-|++ +|.-+|.+++..|..|+. ++++.+-..
T Consensus       186 ~~v~~L~~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~~~  225 (264)
T d1xqra1         186 GMVQQLVALVRT-EHSPFHEHVLGALCSLVTDFPQGVRECR  225 (264)
T ss_dssp             THHHHHHHHHTS-CCSTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999999999999 899999999999999998 766655443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.5e-09  Score=102.39  Aligned_cols=164  Identities=15%  Similarity=0.090  Sum_probs=132.2

Q ss_pred             cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHH-HhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCC
Q 012448           90 TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLL-DCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPAD  167 (463)
Q Consensus        90 ~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li-~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~  167 (463)
                      ...+..+|+.++..+..++++.   +  .+..+...|-++.++ .++.+++.++...|+.+|..++++.+.. +.+...+
T Consensus        27 ~~~~~~~~~~Al~~L~~L~~~~---d--~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~  101 (264)
T d1xqra1          27 QAADQQEREGALELLADLCENM---D--NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG  101 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSH---H--HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHHHHHHHcCH---H--HHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4667899999999999999765   2  344556667777666 5899999999999999999999988765 4677788


Q ss_pred             CcchhhHhhHhh-cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHH
Q 012448          168 NKAATDLGNLVA-QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHS  245 (463)
Q Consensus       168 ~~~~~~L~~~~~-~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g  245 (463)
                      +++  .|-+.+. ..+..+|.++...+..++++++.....+.+.|.++.++..+.+ +|.-++.+++.+|..++. .++.
T Consensus       102 ~i~--~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~  178 (264)
T d1xqra1         102 ALR--KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEH  178 (264)
T ss_dssp             HHH--HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGG
T ss_pred             chH--HHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhc-CchHHHHHHHHHHHHHHhccHHH
Confidence            888  7776765 4678899999999999999999999999999999999999999 999999999999999887 4444


Q ss_pred             HHHHHhcchHHHHHHH
Q 012448          246 AEFLSRTTLLQLLCSL  261 (463)
Q Consensus       246 ~~~L~~~gi~~~L~~~  261 (463)
                      .+.+.+.|+++.|+..
T Consensus       179 ~~~~~~~~~v~~L~~l  194 (264)
T d1xqra1         179 KGTLCSMGMVQQLVAL  194 (264)
T ss_dssp             HHHHHHTTHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHH
Confidence            4444444444444333

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=5.2e-09  Score=108.01  Aligned_cols=342  Identities=14%  Similarity=0.107  Sum_probs=214.3

Q ss_pred             cCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHH
Q 012448           38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASC  117 (463)
Q Consensus        38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~  117 (463)
                      ...+|.+...+++++  +..+..+..+|..+..........+.+.+.+..++++++..||..+++.++.+...-+   . 
T Consensus       202 ~~l~~~l~~l~~d~~--~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~-  275 (588)
T d1b3ua_         202 SEIIPMFSNLASDEQ--DSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---P-  275 (588)
T ss_dssp             HTHHHHHHHHHTCSC--HHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---H-
T ss_pred             HHHHHHHHHHhcCCc--hhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---h-
Confidence            344566666666544  6677777778887766555555555678888899999999999999999998775331   1 


Q ss_pred             HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC-c-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHH
Q 012448          118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG-I-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVK  195 (463)
Q Consensus       118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~-l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~  195 (463)
                         -.....+++.+...+.|++..|...|...|..+++.-.. . ...+-...++  .+.+.....+..+|..+..++..
T Consensus       276 ---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~--~l~~~~~d~~~~vr~~~~~~l~~  350 (588)
T d1b3ua_         276 ---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILP--CIKELVSDANQHVKSALASVIMG  350 (588)
T ss_dssp             ---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHH--HHHHHHTCSCHHHHHHHHTTGGG
T ss_pred             ---hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH--HHHHhhcCCChHHHHHHHHHHhh
Confidence               122347899999999999999999999999998866431 1 1112234444  56667778889999998887777


Q ss_pred             HHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhh
Q 012448          196 LFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRA  275 (463)
Q Consensus       196 ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~a  275 (463)
                      ++..-.   +......+++.+...+++ +|.-++.+++..+..+...- |...+ ...++..+.+.+.+  .++-+|.-+
T Consensus       351 ~~~~~~---~~~~~~~l~p~l~~~l~d-~~~~v~~~~~~~l~~~~~~~-~~~~~-~~~ll~~l~~~~~d--~~~~~r~~~  422 (588)
T d1b3ua_         351 LSPILG---KDNTIEHLLPLFLAQLKD-ECPEVRLNIISNLDCVNEVI-GIRQL-SQSLLPAIVELAED--AKWRVRLAI  422 (588)
T ss_dssp             GHHHHC---HHHHHHHTHHHHHHHHTC-SCHHHHHHHHTTCHHHHHHS-CHHHH-HHHHHHHHHHHHTC--SSHHHHHHH
T ss_pred             hhhccc---hhHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHhhc-chhhh-hhHHHHHHHHHHhc--ccHHHHHHH
Confidence            664311   111223578899999999 99999999999988887632 11222 23455666666543  355456555


Q ss_pred             hhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHH
Q 012448          276 IMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAF  355 (463)
Q Consensus       276 ili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~  355 (463)
                      +...+.+...-+. .++       .+.+...++..+.++...++.+|++++|.+.... |+..       ....++..+.
T Consensus       423 ~~~l~~l~~~~~~-~~~-------~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~-~~~~-------~~~~i~~~l~  486 (588)
T d1b3ua_         423 IEYMPLLAGQLGV-EFF-------DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF-GKEW-------AHATIIPKVL  486 (588)
T ss_dssp             HHHHHHHHHHHCG-GGC-------CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH-CHHH-------HHHHTHHHHH
T ss_pred             HHHHHHHHHHcCh-HhH-------HHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHh-CcHH-------HHHHHHHHHH
Confidence            5444443321010 111       1223333444567788899999999999987522 2211       1122333333


Q ss_pred             hhccchh---hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHH
Q 012448          356 DRQGHGK---QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMI  431 (463)
Q Consensus       356 ~~~~~~~---k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l  431 (463)
                      ....+..   |..++++++.+...-  +        .+. ..    +        .-+..++..+ -|-|++|.++.+.|
T Consensus       487 ~~~~~~~~~~R~~~~~~l~~l~~~~--~--------~~~-~~----~--------~ilp~ll~~~~D~v~nVR~~a~~~l  543 (588)
T d1b3ua_         487 AMSGDPNYLHRMTTLFCINVLSEVC--G--------QDI-TT----K--------HMLPTVLRMAGDPVANVRFNVAKSL  543 (588)
T ss_dssp             HTTTCSCHHHHHHHHHHHHHHHHHH--H--------HHH-HH----H--------HTHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHc--C--------hHH-HH----H--------HHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3333322   778888888776521  1        000 11    1        1133455566 78888888888888


Q ss_pred             HHhhcC
Q 012448          432 TGLVAR  437 (463)
Q Consensus       432 ~~l~~~  437 (463)
                      ..+...
T Consensus       544 ~~i~~~  549 (588)
T d1b3ua_         544 QKIGPI  549 (588)
T ss_dssp             HHHGGG
T ss_pred             HHHHHH
Confidence            887654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=4.8e-08  Score=94.04  Aligned_cols=176  Identities=15%  Similarity=0.097  Sum_probs=136.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-
Q 012448           82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-  160 (463)
Q Consensus        82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-  160 (463)
                      .|-|+..|++++|.||..++++|+.+..++   +. ..+.+.+.|.+|.++.++.+++..+...|+.+|.+++...+.. 
T Consensus         4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~---~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~   79 (457)
T d1xm9a1           4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD---ES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC---SS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHcCC---HH-HHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            577899999999999999999999998655   34 6678889999999999999999999999999999999766544 


Q ss_pred             cccccCCCcchhhHhhHhh-cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhc---------------CCCC
Q 012448          161 DIIFPADNKAATDLGNLVA-QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGV---------------SKKN  224 (463)
Q Consensus       161 ~~l~~~~~~~~~~L~~~~~-~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL---------------~~~~  224 (463)
                      ..+.+.+.++  .|...+. ..+..+|..+..++..++......... ...|+ +.++..+               ....
T Consensus        80 ~~i~~~g~v~--~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~  155 (457)
T d1xm9a1          80 LETRRQNGIR--EAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL-IADAL-PVLADRVIIPFSGWCDGNSNMSREVV  155 (457)
T ss_dssp             HHHHHTTCHH--HHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHH-HHHHH-HHHHHHTTHHHHTCC---------CC
T ss_pred             HHHHHCCChH--HHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHH-Hhccc-HHHHHHHHhhhhhhhcchhhhhcccc
Confidence            5677888887  6664554 357789999999999999876443333 22333 2333222               2237


Q ss_pred             cHHHHHhHHHHHHHHHhhHHHHHHHH-hcchHHHHHHHhccc
Q 012448          225 DTLETLSILELLYELAEIQHSAEFLS-RTTLLQLLCSLIGNS  265 (463)
Q Consensus       225 DvLv~lnalell~eLa~t~~g~~~L~-~~gi~~~L~~~i~~~  265 (463)
                      |.-++.+++..+..++...+..+.+. ..|+++.|+..+.+.
T Consensus       156 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~  197 (457)
T d1xm9a1         156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNC  197 (457)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcc
Confidence            88999999999999999777776555 568899999888653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.7e-07  Score=101.68  Aligned_cols=269  Identities=16%  Similarity=0.138  Sum_probs=155.0

Q ss_pred             hHHHHHccccCCCCcchHHHHHHHHHHHhcccc--ccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448           41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKY--GASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA  118 (463)
Q Consensus        41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~--~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~  118 (463)
                      +|.+...+++.+  ...++.+..+|..+.....  .....+++.++|..+|.++++.||..++|.+|++.+....  . .
T Consensus       397 l~~l~~~l~s~~--~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~--~-~  471 (888)
T d1qbkb_         397 LPLLKELLFHHE--WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS--Q-P  471 (888)
T ss_dssp             HHHHHHTTTSSS--HHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHS--S-C
T ss_pred             HHHHHHhhccch--hHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh--h-h
Confidence            344555666544  6788888888888754221  1234567789999999999999999999999998753210  0 1


Q ss_pred             HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448          119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF  197 (463)
Q Consensus       119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia  197 (463)
                      .+.. -..+++.++..+.|++..|...|..+|..+..... .+.-.+ +..++  .|.+.+...+...+.-+++.+..++
T Consensus       472 ~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~-~~il~--~l~~~l~~~~~~~~~~~~~al~~l~  547 (888)
T d1qbkb_         472 PDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILD--TLVFAFSKYQHKNLLILYDAIGTLA  547 (888)
T ss_dssp             HHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH-HHHHH--HHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             hhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHH--HHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            1111 13688899999999999999999999998875432 221111 12223  3443445556666767777776665


Q ss_pred             hcC------HHHHHHHHhhccHHHHH---hhcCC----------------------------------------------
Q 012448          198 SVS------RSVASVIFKANLLTLLE---EGVSK----------------------------------------------  222 (463)
Q Consensus       198 ~~S------~~~~~~v~~sgl~~~ll---~eL~~----------------------------------------------  222 (463)
                      ...      ++..+.     +++.++   ..+.+                                              
T Consensus       548 ~~~~~~~~~~~~~~~-----l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  622 (888)
T d1qbkb_         548 DSVGHHLNKPEYIQM-----LMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAM  622 (888)
T ss_dssp             HHHGGGGCSHHHHHH-----HHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhccccchHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            421      111111     111111   11111                                              


Q ss_pred             ----------CCcHHHHHhHHHHHHHHHh--hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccch
Q 012448          223 ----------KNDTLETLSILELLYELAE--IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHM  290 (463)
Q Consensus       223 ----------~~DvLv~lnalell~eLa~--t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~  290 (463)
                                ..|.-+...+++++..+++  .++-..|+.+..++..+...+.+  .+|.+|..++.+.|-+...  .. 
T Consensus       623 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~--~~~~vr~~a~~llgdl~~~--~~-  697 (888)
T d1qbkb_         623 LNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD--KMPEVRQSSFALLGDLTKA--CF-  697 (888)
T ss_dssp             HHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHH--CG-
T ss_pred             HHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCC--CChHHHHHHHHHHHHHHHh--hh-
Confidence                      0222233344555555554  33334445455555555555543  3444554555444443321  00 


Q ss_pred             hcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448          291 FIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS  331 (463)
Q Consensus       291 ~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs  331 (463)
                         .-+....+.++..+...+++++...+..|+|++|.|+.
T Consensus       698 ---~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~  735 (888)
T d1qbkb_         698 ---QHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISI  735 (888)
T ss_dssp             ---GGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHH
Confidence               00223344556655566777888899999999999975

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.5e-07  Score=95.08  Aligned_cols=380  Identities=12%  Similarity=0.119  Sum_probs=222.9

Q ss_pred             hHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 012448           41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQ  120 (463)
Q Consensus        41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~  120 (463)
                      +|.+...+.+.+  +..++.++.+|.++.....+..+...+.+.+..-.+.+...+|..++..++.+..+.+.  . .. 
T Consensus        89 l~~l~~l~~~~~--~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~--~-~~-  162 (588)
T d1b3ua_          89 LPPLESLATVEE--TVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--A-VK-  162 (588)
T ss_dssp             HHHHHHHTTSSC--HHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--H-HH-
T ss_pred             HHHHHHHccCCC--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhH--H-HH-
Confidence            455555555433  66778888888888766655555555666666666777777888888777777665421  1 11 


Q ss_pred             HhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcC
Q 012448          121 LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVS  200 (463)
Q Consensus       121 ~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S  200 (463)
                          .++.+.+...++|++..|.+.|+.++..+++.-+. + ...+..++  .+.......++.+|.-+.+.+.+++..-
T Consensus       163 ----~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~-~-~~~~~l~~--~l~~l~~d~~~~vr~~a~~~l~~i~~~~  234 (588)
T d1b3ua_         163 ----AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL-D-NVKSEIIP--MFSNLASDEQDSVRLLAVEACVNIAQLL  234 (588)
T ss_dssp             ----HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH-H-HHHHTHHH--HHHHHHTCSCHHHHTTHHHHHHHHHHHS
T ss_pred             ----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH-H-HHHHHHHH--HHHHHhcCCchhhHHHHHHHHHHhhccC
Confidence                24677888889999999999999999999876431 1 12234444  5666777889999999999999998764


Q ss_pred             HHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhh
Q 012448          201 RSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISG  280 (463)
Q Consensus       201 ~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g  280 (463)
                      ++-   -....+++.+..-+.| ++.-||.++++.+.+++..-..  ......++..+...+.+  .++-+|.-++...+
T Consensus       235 ~~~---~~~~~i~~~l~~~~~D-~~~~Vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d--~~~~vr~~a~~~l~  306 (588)
T d1b3ua_         235 PQE---DLEALVMPTLRQAAED-KSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKD--CEAEVRAAASHKVK  306 (588)
T ss_dssp             CHH---HHHHHTHHHHHHHHTC-SSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred             CHH---HHHHHHHHHHHHhccc-ccHHHHHHHHHhHHHHHHHhhh--hhhhhhhhHHHHHHHhc--cchHHHHHHHHHHH
Confidence            321   1223577888888888 8999999999999999873221  13344567777777665  46666766665555


Q ss_pred             hhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccc
Q 012448          281 RLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGH  360 (463)
Q Consensus       281 ~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~  360 (463)
                      .+....+.-... ...   ....+..+.....+.+...+..+..+++.++... |+..       ...+++..+.....+
T Consensus       307 ~~~~~l~~~~~~-~~~---~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~-~~~~-------~~~~l~p~l~~~l~d  374 (588)
T d1b3ua_         307 EFCENLSADCRE-NVI---MSQILPCIKELVSDANQHVKSALASVIMGLSPIL-GKDN-------TIEHLLPLFLAQLKD  374 (588)
T ss_dssp             HHHHTSCTTTHH-HHH---HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH-CHHH-------HHHHTHHHHHHHHTC
T ss_pred             HHHHHHhhhhhh-hhh---HHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhcc-chhH-------HHHHHHHHHHHHHHh
Confidence            443311111000 001   1122222333557788889998888888775422 2211       112222222333332


Q ss_pred             -h--hhHhHHhhhHHHhcCCCch--hhhh-------hhhhHHHHHHHHHHHHHhh---C-----CCCChhHHHHHHh-cC
Q 012448          361 -G--KQLAALHGLANIAGKTRSE--DKII-------LNADAEESLRHLIYEVASR---S-----SKLTPSGLFLSVL-QQ  419 (463)
Q Consensus       361 -~--~k~r~L~al~~Il~~~r~~--~~~i-------l~~~~e~~l~~~~ye~~~~---~-----~~~~p~~~~~~~~-qp  419 (463)
                       .  .+..++.+++.+...-..+  ...+       +++... +++.-+.+.+..   .     ....-..+++... -+
T Consensus       375 ~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~-~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~  453 (588)
T d1b3ua_         375 ECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKW-RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDH  453 (588)
T ss_dssp             SCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSH-HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCS
T ss_pred             hhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCC
Confidence             1  1555555555554421100  0000       011111 122222222211   1     1112234566666 88


Q ss_pred             CHHHHHHHHHHHHHhhcC---chhHHHhhhccchhHhhcCC
Q 012448          420 AAEIRLAGYRMITGLVAR---PWCLMELCSKQEIINTVTDA  457 (463)
Q Consensus       420 F~elr~A~~~~l~~l~~~---~Wg~~~i~~~~gfie~lldr  457 (463)
                      ..++|.+|.+.+..++.+   .|....+.  |.+.++.-|+
T Consensus       454 ~~~VR~~A~~~L~~l~~~~~~~~~~~~i~--~~l~~~~~~~  492 (588)
T d1b3ua_         454 VYAIREAATSNLKKLVEKFGKEWAHATII--PKVLAMSGDP  492 (588)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCHHHHHHHTH--HHHHHTTTCS
T ss_pred             chhHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHhcCC
Confidence            999999999999999987   45544433  3445544443

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3.8e-07  Score=88.79  Aligned_cols=275  Identities=12%  Similarity=0.076  Sum_probs=171.3

Q ss_pred             ChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---chhhchHHHHHHhhcC--CCHHHHHHHHHHHHHHHhCCchh
Q 012448           40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---SLIPHYMPFVQVGLTA--DSHSVKRLACKTVTCLLEDSDLE  114 (463)
Q Consensus        40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~l~~~~~~~l~~gL~h--~~~~Vr~Lal~~l~~i~~~~~~~  114 (463)
                      .++.++..+.+.+..+..++.+..+|..+.....+.   .....+.+.+..++.+  ++..||..+++.++.+....   
T Consensus       128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~---  204 (458)
T d1ibrb_         128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT---  204 (458)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT---
T ss_pred             hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhh---
Confidence            356677777765544455666667888776544333   3345568888888875  56789999999999998765   


Q ss_pred             HHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC-ccccccCCCcchhhHhhHhhcCCchhHHHHHHHH
Q 012448          115 ASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG-IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLI  193 (463)
Q Consensus       115 ~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~-l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~  193 (463)
                      ............+.+.+...+.+++..+.+.+..+|..+++..+. +..-+.+....  .+.....+.++.+|..+++++
T Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~a~~~l  282 (458)
T d1ibrb_         205 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA--ITIEAMKSDIDEVALQGIEFW  282 (458)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHH--HHHHHHHCSSHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHhccccHHHHHHHHHHH
Confidence            220112223335677788889999999999999999999876542 22112222222  344455678889999999999


Q ss_pred             HHHHhcCHHHHHH--------------------HHhhccHHHHHhhcCC------CCcHHHHHhHHHHHHHHHhhHHHHH
Q 012448          194 VKLFSVSRSVASV--------------------IFKANLLTLLEEGVSK------KNDTLETLSILELLYELAEIQHSAE  247 (463)
Q Consensus       194 v~ia~~S~~~~~~--------------------v~~sgl~~~ll~eL~~------~~DvLv~lnalell~eLa~t~~g~~  247 (463)
                      ..++..-.+....                    ..-..+++.+...+.+      .+|--++..+.+++..++.... -+
T Consensus       283 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~-~~  361 (458)
T d1ibrb_         283 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DD  361 (458)
T ss_dssp             HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TT
T ss_pred             HHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhcc-Hh
Confidence            9887643332211                    1112344444444332      1333478889999999988321 11


Q ss_pred             HHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcc--ccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHH
Q 012448          248 FLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLS--KDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEA  325 (463)
Q Consensus       248 ~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~--f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dt  325 (463)
                      ++  ..+++.+.+.+.  ..|+-.|--++++.|-+.-  ++..++       ...|..+..++..+.++++.++.+|+||
T Consensus       362 ~~--~~l~~~i~~~l~--s~~~~~r~aal~~l~~i~~~~~~~~~~-------~~l~~i~~~l~~~l~d~~~~VR~~a~~~  430 (458)
T d1ibrb_         362 IV--PHVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLK-------PLVIQAMPTLIELMKDPSVVVRDTAAWT  430 (458)
T ss_dssp             HH--HHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTC-------TTTTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             hh--hHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCHhHHH-------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            11  123444445444  3566666556676676653  112221       1123344445557788999999999999


Q ss_pred             HHhhcC
Q 012448          326 LGQIGS  331 (463)
Q Consensus       326 lG~Igs  331 (463)
                      ||.|+.
T Consensus       431 l~~i~~  436 (458)
T d1ibrb_         431 VGRICE  436 (458)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999975

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=2e-06  Score=78.78  Aligned_cols=233  Identities=9%  Similarity=-0.031  Sum_probs=125.0

Q ss_pred             HHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCch
Q 012448           34 KFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDL  113 (463)
Q Consensus        34 ~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~  113 (463)
                      ..-....-+.|+.+|++.+  +..+..++.+|..+     +.   +...+.+...|+++++.||..+++.++.+......
T Consensus        14 ~~~~~~~~~~L~~~L~d~~--~~vR~~A~~~L~~~-----~~---~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~   83 (276)
T d1oyza_          14 NQCKKLNDDELFRLLDDHN--SLKRISSARVLQLR-----GG---QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   83 (276)
T ss_dssp             HHHHTSCHHHHHHHTTCSS--HHHHHHHHHHHHHH-----CC---HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             cccccCCHHHHHHHhcCCC--HHHHHHHHHHHHhh-----CC---HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            3445566667778887655  77777777777765     11   33456677777788888888888887775432211


Q ss_pred             hHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHH
Q 012448          114 EASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLI  193 (463)
Q Consensus       114 ~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~  193 (463)
                      ... .        +-.++-..+.|++..|...|..+|.+++.+.+.    ..+..++  .+...+...+..+|..+...+
T Consensus        84 ~~~-~--------~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~--~l~~~~~d~~~~vr~~a~~~l  148 (276)
T d1oyza_          84 EDN-V--------FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVE--QSQITAFDKSTNVRRATAFAI  148 (276)
T ss_dssp             HHH-H--------HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHH--HHHHHTTCSCHHHHHHHHHHH
T ss_pred             ccc-h--------HHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHH--HHHHHhcCcchHHHHHHHHHH
Confidence            111 1        111223456677777888888888777655431    1112233  444444455566666555444


Q ss_pred             HHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhh
Q 012448          194 VKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRS  273 (463)
Q Consensus       194 v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~  273 (463)
                      ..+..           ...++.+...+.+ .+.-++..+...+........        .....+...+.  ..++.++.
T Consensus       149 ~~~~~-----------~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~~  206 (276)
T d1oyza_         149 SVIND-----------KATIPLLINLLKD-PNGDVRNWAAFAININKYDNS--------DIRDCFVEMLQ--DKNEEVRI  206 (276)
T ss_dssp             HTC--------------CCHHHHHHHHTC-SSHHHHHHHHHHHHHHTCCCH--------HHHHHHHHHTT--CSCHHHHH
T ss_pred             hhcch-----------HHHHHHHHHhccc-ccchhhhhHHHHHHhhhcccc--------ccchhhhhhhh--hhhhhhhh
Confidence            33321           2344555555666 666666666655544333211        11222333322  24444444


Q ss_pred             hhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448          274 RAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS  331 (463)
Q Consensus       274 ~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs  331 (463)
                      .++...|.+..            ...+|.+++.+    .  |+.++..|+++||.||.
T Consensus       207 ~~~~al~~~~~------------~~~~~~L~~~l----~--d~~vr~~a~~aL~~ig~  246 (276)
T d1oyza_         207 EAIIGLSYRKD------------KRVLSVLCDEL----K--KNTVYDDIIEAAGELGD  246 (276)
T ss_dssp             HHHHHHHHTTC------------GGGHHHHHHHH----T--SSSCCHHHHHHHHHHCC
T ss_pred             hhccccchhhh------------hhhHHHHHHHh----C--ChHHHHHHHHHHHHcCC
Confidence            44444333322            12244544432    2  45678889999999884

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.4e-06  Score=84.66  Aligned_cols=310  Identities=15%  Similarity=0.110  Sum_probs=183.7

Q ss_pred             HHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcC--CCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448           42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTA--DSHSVKRLACKTVTCLLEDSDLEASCAL  119 (463)
Q Consensus        42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h--~~~~Vr~Lal~~l~~i~~~~~~~~~~~~  119 (463)
                      +.++.++.+.+.   .+..++.++..+.....+....+.+.+.+...+..  .++.+++.++..++.+.......   ..
T Consensus        92 ~~ll~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~  165 (458)
T d1ibrb_          92 NYVLQTLGTETY---RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE---QL  165 (458)
T ss_dssp             HHHHHHTTCCCS---SSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGG---GT
T ss_pred             HHHHhccCCCcH---HHHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccch---hh
Confidence            457777776552   24445666666655545555567778888888865  46788999999999987654211   11


Q ss_pred             HHhhccCcHHHHHHhhcC--CchHHHHHHHHHHHHHhCCCCCc-c-ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHH
Q 012448          120 QLLIDYEIYPLLLDCLIN--GNEEVATASMDAIKKLAGFPNGI-D-IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVK  195 (463)
Q Consensus       120 ~~~~~~~l~~~li~~l~d--~d~~va~~A~~~L~~lak~~~~l-~-~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~  195 (463)
                      +. .-..+++.++..+.+  ++..+...|++++..+..+.... . ..+.+...+  .+...+...+..+|.-+++++.+
T Consensus       166 ~~-~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~l~~  242 (458)
T d1ibrb_         166 QD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ--VVCEATQCPDTRVRVAALQNLVK  242 (458)
T ss_dssp             GG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHH--HHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             hh-hHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHh--hHHHHhcCCCHHHHHHHHHHHHH
Confidence            11 112467777778865  45679999999999998765321 1 111112222  44445667788999999999999


Q ss_pred             HHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHH-HHHh--------------------cch
Q 012448          196 LFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAE-FLSR--------------------TTL  254 (463)
Q Consensus       196 ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~-~L~~--------------------~gi  254 (463)
                      ++...++.+.--....++..+...+++ +|.-++..+++.+..+++...-.. ....                    ..+
T Consensus       243 i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  321 (458)
T d1ibrb_         243 IMSLYYQYMETYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYL  321 (458)
T ss_dssp             HHHHCGGGCTTTTTTTHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHH
Confidence            999888766443344455556666777 777889999999999987432211 1100                    112


Q ss_pred             HHHHHHHhccccc---c--hhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhh
Q 012448          255 LQLLCSLIGNSAT---E--TILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQI  329 (463)
Q Consensus       255 ~~~L~~~i~~~~~---d--pl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~I  329 (463)
                      +..+.+...+..+   |  .-+|.-+.-+.+.+.      ....   ...+|.++..+.+.+.++|...+.+|+.+||.|
T Consensus       322 ~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~------~~~~---~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i  392 (458)
T d1ibrb_         322 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA------TCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCI  392 (458)
T ss_dssp             HHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH------HHTT---TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             hhhHHhhhhcchhhhccccccHHHHHHHHHHHHH------Hhcc---HhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            2223333222111   1  111211111111111      1110   122455666566677889999999999999999


Q ss_pred             cCCHHHHHHHhhcCchhHHHHHHHHHhhccc--hh-hHhHHhhhHHHhc
Q 012448          330 GSSIQGATLLLLCLPPAARHVIDAAFDRQGH--GK-QLAALHGLANIAG  375 (463)
Q Consensus       330 gss~eGk~~L~~~~~~~~~~~l~~~~~~~~~--~~-k~r~L~al~~Il~  375 (463)
                      +....++..     .+-+..++..+.....+  .. |.+|+.+++.|..
T Consensus       393 ~~~~~~~~~-----~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         393 LEGPEPSQL-----KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             SSSSCTTTT-----CTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCHhHH-----HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            865443321     12233344444444443  22 8888999998875

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=6.7e-05  Score=68.12  Aligned_cols=223  Identities=14%  Similarity=0.033  Sum_probs=151.8

Q ss_pred             hHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 012448           41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQ  120 (463)
Q Consensus        41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~  120 (463)
                      +|.|...|++.+  +..+..++..|..+..  ............+...++++++.||..++..++++..+.   .. .  
T Consensus        52 ~~~l~~~l~d~~--~~vr~~a~~aL~~l~~--~~~~~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~---~~-~--  121 (276)
T d1oyza_          52 VRLAIEFCSDKN--YIRRDIGAFILGQIKI--CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN---PI-Y--  121 (276)
T ss_dssp             HHHHHHHHTCSS--HHHHHHHHHHHHHSCC--CTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC---GG-G--
T ss_pred             HHHHHHHHcCCC--HHHHHHHHHHHHHhcc--ccccccchHHHHHHHHhcCCChhHHHHHHHHHHHHcccc---ch-h--
Confidence            578888888766  7888888888887722  111112123345666789999999999999999987654   11 1  


Q ss_pred             HhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcC
Q 012448          121 LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVS  200 (463)
Q Consensus       121 ~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S  200 (463)
                         ...+++.+...+.|++..|...|+.++..+..          +...+  .+.......++.+|..+...+..+....
T Consensus       122 ---~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~----------~~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~  186 (276)
T d1oyza_         122 ---SPKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIP--LLINLLKDPNGDVRNWAAFAININKYDN  186 (276)
T ss_dssp             ---HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHH--HHHHHHTCSSHHHHHHHHHHHHHHTCCC
T ss_pred             ---hHHHHHHHHHHhcCcchHHHHHHHHHHhhcch----------HHHHH--HHHHhcccccchhhhhHHHHHHhhhccc
Confidence               12467778888999999999999888876542          23333  5555777888888888777777666655


Q ss_pred             HHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhh
Q 012448          201 RSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISG  280 (463)
Q Consensus       201 ~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g  280 (463)
                      ..         ..+.++..+.+ +|..++..++..+..+.          ....++.|++.+.    ||.+|..++.+.|
T Consensus       187 ~~---------~~~~~~~~~~~-~~~~~~~~~~~al~~~~----------~~~~~~~L~~~l~----d~~vr~~a~~aL~  242 (276)
T d1oyza_         187 SD---------IRDCFVEMLQD-KNEEVRIEAIIGLSYRK----------DKRVLSVLCDELK----KNTVYDDIIEAAG  242 (276)
T ss_dssp             HH---------HHHHHHHHTTC-SCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHT----SSSCCHHHHHHHH
T ss_pred             cc---------cchhhhhhhhh-hhhhhhhhhccccchhh----------hhhhHHHHHHHhC----ChHHHHHHHHHHH
Confidence            53         44456777888 99999999888776553          3446777777664    4557777777777


Q ss_pred             hhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHH
Q 012448          281 RLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALG  327 (463)
Q Consensus       281 ~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG  327 (463)
                      .+...            ...|.+.. ++  -+.+|..++..|+++|+
T Consensus       243 ~ig~~------------~~~~~L~~-~l--~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         243 ELGDK------------TLLPVLDT-ML--YKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHCCG------------GGHHHHHH-HH--TTSSCCHHHHHHHHHHT
T ss_pred             HcCCH------------HHHHHHHH-HH--ccCCCHHHHHHHHHHHc
Confidence            66530            12333333 32  24467788999999975

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=8.9e-06  Score=89.87  Aligned_cols=272  Identities=13%  Similarity=0.085  Sum_probs=169.0

Q ss_pred             CChHHHHHccccCCCCcchHHHHHHHHHHHhccccc---cchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhH
Q 012448           39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG---ASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEA  115 (463)
Q Consensus        39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~---~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~  115 (463)
                      +.+..|++.+++.+  |.+|-.++.-|.+.++....   .....++.+.|..+|+.+++.||.+|++.++.++.+.... 
T Consensus         3 ~~~~~ll~k~~~~D--~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~-   79 (1207)
T d1u6gc_           3 YHISNLLEKMTSSD--KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-   79 (1207)
T ss_dssp             HHHHHHHHHTTCSS--HHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-
T ss_pred             hhHHHHHHhcCCCC--HhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh-
Confidence            45678888888766  88888888766666643221   2345668999999999999999999999999999876321 


Q ss_pred             HHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC-Cc-cccccCCCcch--hhHhhHh-hcCCchhHHHHH
Q 012448          116 SCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN-GI-DIIFPADNKAA--TDLGNLV-AQCSSLGRVRVL  190 (463)
Q Consensus       116 ~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~-~l-~~l~~~~~~~~--~~L~~~~-~~~~~~vR~Rv~  190 (463)
                        ..     ..++..++..+.+++..+...+..+|+.+-..-+ .. ..-+.......  ..|.... ...+..+|.-++
T Consensus        80 --~~-----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al  152 (1207)
T d1u6gc_          80 --QV-----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEAL  152 (1207)
T ss_dssp             --HH-----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHH
T ss_pred             --hH-----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence              11     1356667777778888877777777766532211 00 00111111110  0122111 244667888899


Q ss_pred             HHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchh
Q 012448          191 SLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETI  270 (463)
Q Consensus       191 el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl  270 (463)
                      +++..+.+.....+.... ..+++.++..+.+ ++.-+|..|+.++..++..-.. .+  -..++..++..+........
T Consensus       153 ~~l~~l~~~~g~~l~~~~-~~il~~l~~~l~~-~~~~vR~~A~~~l~~l~~~~~~-~~--~~~~~~~ll~~l~~~~~~~~  227 (1207)
T d1u6gc_         153 DIMADMLSRQGGLLVNFH-PSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGN-IV--FVDLIEHLLSELSKNDSMST  227 (1207)
T ss_dssp             HHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCS
T ss_pred             HHHHHHHHHhhHhhHHHH-HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHCCH-HH--HHHHHHHHHHHHccCCCHHH
Confidence            999999876554433222 3588899999999 8888999999999999873211 11  12456666666654433332


Q ss_pred             hhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCC
Q 012448          271 LRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSS  332 (463)
Q Consensus       271 ~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss  332 (463)
                       |.-++.+.|.+....+ ..|     .+..+..+..+++.+.+.++..+..|+.+++.+...
T Consensus       228 -~~~~~~~l~~l~~~~~-~~~-----~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~  282 (1207)
T d1u6gc_         228 -TRTYIQCIAAISRQAG-HRI-----GEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR  282 (1207)
T ss_dssp             -CTTHHHHHHHHHHHSS-GGG-----TTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHHHcc-hhh-----HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence             3233434444432111 111     111233444455567888899999999999887753

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=0.0001  Score=77.25  Aligned_cols=311  Identities=14%  Similarity=0.082  Sum_probs=186.4

Q ss_pred             HHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCC--HHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448           42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADS--HSVKRLACKTVTCLLEDSDLEASCAL  119 (463)
Q Consensus        42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~--~~Vr~Lal~~l~~i~~~~~~~~~~~~  119 (463)
                      ..++.+|.+.++   .+.+++.++.+++....|..--|.+.+.|...+.+++  +.+|+.++..++++.+.-..  . ..
T Consensus        93 ~~ll~~l~~~~~---~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~-~~  166 (876)
T d1qgra_          93 NYVLHTLGTETY---RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--E-QL  166 (876)
T ss_dssp             HHHHHHTTTCCS---SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--H-HH
T ss_pred             HHHHHHhcCCcH---HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--H-HH
Confidence            467788877553   3456788888887655554456778888888887765  67899999999999875421  1 11


Q ss_pred             HHhhccCcHHHHHHhhcCC--chHHHHHHHHHHHHHhCCCCCc--cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHH
Q 012448          120 QLLIDYEIYPLLLDCLING--NEEVATASMDAIKKLAGFPNGI--DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVK  195 (463)
Q Consensus       120 ~~~~~~~l~~~li~~l~d~--d~~va~~A~~~L~~lak~~~~l--~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~  195 (463)
                      +.-. ..+++.++..+.++  +..+...|++++..........  ...+......  .+...+...+..+|..+++++.+
T Consensus       167 ~~~~-~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~--~l~~~~~~~~~~v~~~~~~~l~~  243 (876)
T d1qgra_         167 QDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ--VVCEATQCPDTRVRVAALQNLVK  243 (876)
T ss_dssp             GGGH-HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH--HHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH--HHHHHhcCCCHHHHHHHHHHHHH
Confidence            1111 25788888888654  4678999999988776543211  0011111222  34445567888999999999999


Q ss_pred             HHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHH-----HHH----------------hcch
Q 012448          196 LFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAE-----FLS----------------RTTL  254 (463)
Q Consensus       196 ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~-----~L~----------------~~gi  254 (463)
                      +.+.-++.+.......+++.+...+++ ++.-++..+++.+..+++......     +..                ...+
T Consensus       244 l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  322 (876)
T d1qgra_         244 IMSLYYQYMETYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYL  322 (876)
T ss_dssp             HHHHSGGGCHHHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            999888777666666677788888888 777888999999998887332211     111                0122


Q ss_pred             HHHHHHHhcccccchh-----hhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhh
Q 012448          255 LQLLCSLIGNSATETI-----LRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQI  329 (463)
Q Consensus       255 ~~~L~~~i~~~~~dpl-----~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~I  329 (463)
                      +..+...+....++..     .+.-+.-+.+.+..     .+.    ...+|.++..+.+.+.+++...+.+++..+|.+
T Consensus       323 ~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~-----~~~----~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~  393 (876)
T d1qgra_         323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT-----CCE----DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCI  393 (876)
T ss_dssp             HHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHH-----HHG----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHhcccccccccchHHHHHHHHHHHHHH-----Hhh----hhhhhhhHHHHHHhhccchHHHHHHHHHHHHhh
Confidence            2222233222211110     11000011111100     011    122455555555667889999999999999998


Q ss_pred             cCCHHHHHHHhhcCchhHHHHHHHHHhhccc-hh--hHhHHhhhHHHhcC
Q 012448          330 GSSIQGATLLLLCLPPAARHVIDAAFDRQGH-GK--QLAALHGLANIAGK  376 (463)
Q Consensus       330 gss~eGk~~L~~~~~~~~~~~l~~~~~~~~~-~~--k~r~L~al~~Il~~  376 (463)
                      ......+..-.     ....++..+.....+ .+  |-.++.+++.+...
T Consensus       394 ~~~~~~~~~~~-----~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T d1qgra_         394 LEGPEPSQLKP-----LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             SSSSCHHHHHH-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHH-----HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHH
Confidence            76443322211     223344444444333 22  66688888888763

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=5.9e-05  Score=79.05  Aligned_cols=274  Identities=12%  Similarity=0.083  Sum_probs=162.8

Q ss_pred             hHHHHHccccCCCCcchHHHHHHHHHHHhccccccch---hhchHHHHHHhhcCC--CHHHHHHHHHHHHHHHhCCchhH
Q 012448           41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASL---IPHYMPFVQVGLTAD--SHSVKRLACKTVTCLLEDSDLEA  115 (463)
Q Consensus        41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l---~~~~~~~l~~gL~h~--~~~Vr~Lal~~l~~i~~~~~~~~  115 (463)
                      +|.|+..+.+.+.....++.+..+|..++....+..+   ...+.+.+..++.++  +..||..+++.+...+...   .
T Consensus       130 i~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~---~  206 (876)
T d1qgra_         130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT---K  206 (876)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC---H
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHh---h
Confidence            5666677766554455666777788888765555433   344677788888654  5789999999999988765   2


Q ss_pred             HHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHH
Q 012448          116 SCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIV  194 (463)
Q Consensus       116 ~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v  194 (463)
                      ...........++..+..++++++..+.+.|.+.|..+.+..+.. .....+....  .+.......++.++...++...
T Consensus       207 ~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~  284 (876)
T d1qgra_         207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA--ITIEAMKSDIDEVALQGIEFWS  284 (876)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHH--HHHHHHTCSSHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHhccccHHHHHHHHHHHH
Confidence            201111122246777778999999999999999999998765422 1111222222  3333455778889999999888


Q ss_pred             HHHhcCHHHHHHH--------------------HhhccHHHHHhhcCC------CCcHHHHHhHHHHHHHHHhhHHHHHH
Q 012448          195 KLFSVSRSVASVI--------------------FKANLLTLLEEGVSK------KNDTLETLSILELLYELAEIQHSAEF  248 (463)
Q Consensus       195 ~ia~~S~~~~~~v--------------------~~sgl~~~ll~eL~~------~~DvLv~lnalell~eLa~t~~g~~~  248 (463)
                      .++....+.....                    ....+++.+...+.+      .++--++..+.+++..++...     
T Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~-----  359 (876)
T d1qgra_         285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC-----  359 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHh-----
Confidence            8886544332211                    112333444433322      133346788888888888732     


Q ss_pred             HHhcchHHHHHHHhcccc--cchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHH
Q 012448          249 LSRTTLLQLLCSLIGNSA--TETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEAL  326 (463)
Q Consensus       249 L~~~gi~~~L~~~i~~~~--~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtl  326 (463)
                        ...++..+...+...-  .++..|.-+++..|-+..  +...   .......+..+..+...+.++++..+.+|+|++
T Consensus       360 --~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~--~~~~---~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l  432 (876)
T d1qgra_         360 --EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE--GPEP---SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV  432 (876)
T ss_dssp             --GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS--SSCH---HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             --hhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhh--hhhH---HHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHH
Confidence              1223344444444322  344334333444443332  1110   001122344555555667788999999999999


Q ss_pred             HhhcC
Q 012448          327 GQIGS  331 (463)
Q Consensus       327 G~Igs  331 (463)
                      |.++.
T Consensus       433 ~~~~~  437 (876)
T d1qgra_         433 GRICE  437 (876)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=5.9e-05  Score=78.59  Aligned_cols=312  Identities=11%  Similarity=0.067  Sum_probs=181.5

Q ss_pred             HHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCC-HHHHHHHHHHHHHHHhCCchhHHHHHH
Q 012448           42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADS-HSVKRLACKTVTCLLEDSDLEASCALQ  120 (463)
Q Consensus        42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~-~~Vr~Lal~~l~~i~~~~~~~~~~~~~  120 (463)
                      ..++.+|.+.+  +..+.+++.++.++...-.|..-.|.+.+.|...+.+++ +.+|..++..++.+.+..+....   .
T Consensus        98 ~~ll~~l~~~~--~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~---~  172 (861)
T d2bpta1          98 TNALTALVSIE--PRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ---A  172 (861)
T ss_dssp             HHHHHHHTCSS--HHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS---T
T ss_pred             HHHHHHHcCCC--HHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHH---H
Confidence            45677887655  788999999999986544443345678888888887765 57899999999999876522111   1


Q ss_pred             Hhhc-cCcHHHHHHhhc--CCchHHHHHHHHHHHHHhCCCCC-cc-ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHH
Q 012448          121 LLID-YEIYPLLLDCLI--NGNEEVATASMDAIKKLAGFPNG-ID-IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVK  195 (463)
Q Consensus       121 ~~~~-~~l~~~li~~l~--d~d~~va~~A~~~L~~lak~~~~-l~-~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~  195 (463)
                      .... ..++..++..+.  +++..+...|++++..+..+-+. .. ..+......  .+.+.+...+..+|..+++++..
T Consensus       173 ~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~l~~  250 (861)
T d2bpta1         173 LVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ--VVCEATQAEDIEVQAAAFGCLCK  250 (861)
T ss_dssp             TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH--HHHHHHTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHH--hHHHHhcCCCHHHHHHHHHHHHH
Confidence            1110 134555555554  45577888999999887655321 10 000011122  33345667899999999999999


Q ss_pred             HHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHh-----------------cchHHHH
Q 012448          196 LFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSR-----------------TTLLQLL  258 (463)
Q Consensus       196 ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~-----------------~gi~~~L  258 (463)
                      +++..++.+......-+........++ .|.-++..+++++..+++......+...                 ..++..+
T Consensus       251 i~~~~~~~~~~~l~~~l~~l~~~~~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l  329 (861)
T d2bpta1         251 IMSKYYTFMKPYMEQALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNL  329 (861)
T ss_dssp             HHHHHGGGCHHHHHHTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            998877665544444444445566677 8999999999999999885443322211                 1234444


Q ss_pred             HHHhcccccchh-----hhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCH
Q 012448          259 CSLIGNSATETI-----LRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSI  333 (463)
Q Consensus       259 ~~~i~~~~~dpl-----~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~  333 (463)
                      .+.+....+|+.     .+..+..+.+.+..     .+.    ...+|.....+-....+.+...+.+|+.++|.+....
T Consensus       330 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~  400 (861)
T d2bpta1         330 LNLLTRQNEDPEDDDWNVSMSAGACLQLFAQ-----NCG----NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGP  400 (861)
T ss_dssp             HHHTTCCCCC-CCCCCHHHHHHHHHHHHHHH-----HHG----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHHHh-----hcc----hhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhc
Confidence            444443332221     11001011111100     011    1123444444445667888999999999999998743


Q ss_pred             HHHHHHhhcCchhHHHHHHHHHhhccc-hh--hHhHHhhhHHHhc
Q 012448          334 QGATLLLLCLPPAARHVIDAAFDRQGH-GK--QLAALHGLANIAG  375 (463)
Q Consensus       334 eGk~~L~~~~~~~~~~~l~~~~~~~~~-~~--k~r~L~al~~Il~  375 (463)
                      .... +.    +-...++..+.....+ .+  |-.++.+++.+..
T Consensus       401 ~~~~-~~----~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~  440 (861)
T d2bpta1         401 DKVQ-RT----YYVHQALPSILNLMNDQSLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             CHHH-HH----HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             chhh-HH----HHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence            3221 11    1223344444444332 22  5566666666554

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.6e-05  Score=84.11  Aligned_cols=174  Identities=17%  Similarity=0.195  Sum_probs=121.7

Q ss_pred             hHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhc
Q 012448           57 LEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLI  136 (463)
Q Consensus        57 ~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~  136 (463)
                      .++.+..+|..+. ...+..+.+.+.+++...++++++.+|+.++.++|.+++..   .......+  +.+++.++.++.
T Consensus       373 ~r~~a~~~L~~l~-~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~---~~~~~~~l--~~li~~l~~~l~  446 (888)
T d1qbkb_         373 LRKCSAAALDVLA-NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGC---MQGMIPYL--PELIPHLIQCLS  446 (888)
T ss_dssp             SHHHHHHHSTTTT-TTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTS---HHHHTTTH--HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhHh-hhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhH---HHHhcccc--hhhhHHHHHhcc
Confidence            4555566776653 33456778889999999999999999999999999998765   22122222  247889999999


Q ss_pred             CCchHHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCH-HHHHHHHhhccHH
Q 012448          137 NGNEEVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSR-SVASVIFKANLLT  214 (463)
Q Consensus       137 d~d~~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~-~~~~~v~~sgl~~  214 (463)
                      |++..|...|..+|++++.... ....-+-..+++  .+-+.+...+..||.+++..+..+..... +...++  ..+++
T Consensus       447 d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~--~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~  522 (888)
T d1qbkb_         447 DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT--ELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILD  522 (888)
T ss_dssp             SSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHH--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHH--HHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHH
Confidence            9999999999999999875321 111111223443  44446677888999999999988875432 222333  25778


Q ss_pred             HHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448          215 LLEEGVSKKNDTLETLSILELLYELAE  241 (463)
Q Consensus       215 ~ll~eL~~~~DvLv~lnalell~eLa~  241 (463)
                      .++..+.. .+.-.+.-+.+.+..++.
T Consensus       523 ~l~~~l~~-~~~~~~~~~~~al~~l~~  548 (888)
T d1qbkb_         523 TLVFAFSK-YQHKNLLILYDAIGTLAD  548 (888)
T ss_dssp             HHHHHTTT-CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhh-hhHHHHHHHHHHHHHHHH
Confidence            88888877 666666666777777765

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=0.00012  Score=76.29  Aligned_cols=273  Identities=12%  Similarity=0.072  Sum_probs=157.9

Q ss_pred             HHHHHccccCCCCcchHHHHHHHHHHHhcccccc--chhhchHHH---HHHhh--cCCCHHHHHHHHHHHHHHHhCCchh
Q 012448           42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA--SLIPHYMPF---VQVGL--TADSHSVKRLACKTVTCLLEDSDLE  114 (463)
Q Consensus        42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~--~l~~~~~~~---l~~gL--~h~~~~Vr~Lal~~l~~i~~~~~~~  114 (463)
                      |.|+..+++.+ ....+..+..+|..+.....+.  .+.+...+.   +..++  .+++..||..+++.++..+......
T Consensus       137 ~~L~~~~~s~~-~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~  215 (861)
T d2bpta1         137 KIMVDNTGAEQ-PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN  215 (861)
T ss_dssp             HHHHHHTSTTS-CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHhcCCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHh
Confidence            34445555443 2334555556888876544332  233333333   33444  5667999999999999998876221


Q ss_pred             HHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC-ccccccCCCcchhhHhhHhhcCCchhHHHHHHHH
Q 012448          115 ASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG-IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLI  193 (463)
Q Consensus       115 ~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~-l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~  193 (463)
                         .......+.+++.+..++.+++..+...|.+.+.++++..+. +..-+. ..+. ..+.....+.++.+|...++++
T Consensus       216 ---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~l~-~l~~~~~~~~~~~v~~~~~~~l  290 (861)
T d2bpta1         216 ---MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALY-ALTIATMKSPNDKVASMTVEFW  290 (861)
T ss_dssp             ---HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHH-HHHHHHTTCSSHHHHHHHHHHH
T ss_pred             ---HHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHhcCccHHHHHHHHHHH
Confidence               211222334677888999999999999999999999765331 111011 1111 0112233467889999999999


Q ss_pred             HHHHhcCHHHHHHHH----------------hhccHHHHHhhcCC------CCcHHHHHhHHHHHHHHHhhHHHHHHHHh
Q 012448          194 VKLFSVSRSVASVIF----------------KANLLTLLEEGVSK------KNDTLETLSILELLYELAEIQHSAEFLSR  251 (463)
Q Consensus       194 v~ia~~S~~~~~~v~----------------~sgl~~~ll~eL~~------~~DvLv~lnalell~eLa~t~~g~~~L~~  251 (463)
                      ..++..-.+......                -..+++.+...+..      .+|.-.+..+.+++..++....       
T Consensus       291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------  363 (861)
T d2bpta1         291 STICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-------  363 (861)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-------
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcc-------
Confidence            888765332221111                11345555554432      1455678888888888877322       


Q ss_pred             cchHHHHHHHhcc--cccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhh
Q 012448          252 TTLLQLLCSLIGN--SATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQI  329 (463)
Q Consensus       252 ~gi~~~L~~~i~~--~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~I  329 (463)
                      ..++..+...+..  ...++..|--+++..|.+...  .....   ....++.++..+++.+.++++.++.+|+|++|.+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~--~~~~~---~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l  438 (861)
T d2bpta1         364 NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG--PDKVQ---RTYYVHQALPSILNLMNDQSLQVKETTAWCIGRI  438 (861)
T ss_dssp             GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS--SCHHH---HHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhh--cchhh---HHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHH
Confidence            2334444444433  235555454455555544431  11000   1223445666666777889999999999999998


Q ss_pred             cCC
Q 012448          330 GSS  332 (463)
Q Consensus       330 gss  332 (463)
                      +..
T Consensus       439 ~~~  441 (861)
T d2bpta1         439 ADS  441 (861)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=4.7e-05  Score=83.88  Aligned_cols=329  Identities=10%  Similarity=0.093  Sum_probs=195.8

Q ss_pred             hHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhh-cCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448           41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGL-TADSHSVKRLACKTVTCLLEDSDLEASCAL  119 (463)
Q Consensus        41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL-~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~  119 (463)
                      ++.++.+|++.+  ...++.++.+|..+..... ....+++...+...| .+.+..+|+.++..++.+.+....  . ..
T Consensus       174 l~~l~~~l~~~~--~~vR~~A~~~l~~l~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~--~-~~  247 (1207)
T d1u6gc_         174 LTCLLPQLTSPR--LAVRKRTIIALGHLVMSCG-NIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--R-IG  247 (1207)
T ss_dssp             HHHHGGGGGCSS--HHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--G-GT
T ss_pred             HHHHHHHhCCCC--HHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch--h-hH
Confidence            456677787765  7788888999999865543 334445555555444 577888999999999998876521  1 11


Q ss_pred             HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC-ccc-------------cccCCCcchh-------------
Q 012448          120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG-IDI-------------IFPADNKAAT-------------  172 (463)
Q Consensus       120 ~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~-l~~-------------l~~~~~~~~~-------------  172 (463)
                      ..  =+.+++.++.++.+++..+...|..++..+.+..+. +..             -++++.....             
T Consensus       248 ~~--l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~  325 (1207)
T d1u6gc_         248 EY--LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGG  325 (1207)
T ss_dssp             TS--CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------------
T ss_pred             HH--HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhcc
Confidence            11  146899999999999999999999999998765442 110             0111111000             


Q ss_pred             --------hHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhH-
Q 012448          173 --------DLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQ-  243 (463)
Q Consensus       173 --------~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~-  243 (463)
                              ..-......+..+|..+..++-.+.+..++.+....+ .+++.++..+++ .+.-+|..++..+..+.... 
T Consensus       326 ~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~-~~~~~L~~~l~d-~~~~vr~~~~~~l~~l~~~~~  403 (1207)
T d1u6gc_         326 DDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKE-REENVKADVFHAYLSLLKQTR  403 (1207)
T ss_dssp             ----------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT-TTHHHHHSTTSC-SSSHHHHHHHHHHHHHHHHHC
T ss_pred             chhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhcc
Confidence                    0000122345678999999999999988887776654 689999999999 88899999999888877631 


Q ss_pred             HHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHH
Q 012448          244 HSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESAL  323 (463)
Q Consensus       244 ~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~  323 (463)
                      .....+..        .........|.                       .......|..++.+.+.+.+.+...+..++
T Consensus       404 ~~~~~~~~--------~~~~~~~~~~~-----------------------~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~  452 (1207)
T d1u6gc_         404 PVQSWLCD--------PDAMEQGETPL-----------------------TMLQSQVPNIVKALHKQMKEKSVKTRQCCF  452 (1207)
T ss_dssp             CC--------------------CCCHH-----------------------HHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             chhhhhhc--------hHHHHhhcchH-----------------------HHHHHHhHHHHHHHHHHhcCCchhHHHHHH
Confidence            10000000        00000001110                       002233455566666667788888999999


Q ss_pred             HHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccc----hh-hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHH
Q 012448          324 EALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGH----GK-QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIY  398 (463)
Q Consensus       324 dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~----~~-k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~y  398 (463)
                      .+++.+.....|.  +    .+.+..++..+......    .. |..++.++..++......           .+...+ 
T Consensus       453 ~~l~~l~~~~~~~--l----~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~-----------~~~~~~-  514 (1207)
T d1u6gc_         453 NMLTELVNVLPGA--L----TQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ-----------VFHPHV-  514 (1207)
T ss_dssp             HHHHHHHHHSTTT--T----GGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG-----------GGHHHH-
T ss_pred             HHHHHHHHHcchH--H----HHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHH-----------HHHHHH-
Confidence            9999887643321  1    22334444444443332    22 677788888888754221           011111 


Q ss_pred             HHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhc
Q 012448          399 EVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVA  436 (463)
Q Consensus       399 e~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~  436 (463)
                          .    .-...+.... .+|+.++-.+++.+..++.
T Consensus       515 ----~----~l~~~~~~~~~~~~~~i~~~al~~~~~l~~  545 (1207)
T d1u6gc_         515 ----Q----ALVPPVVACVGDPFYKITSEALLVTQQLVK  545 (1207)
T ss_dssp             ----T----TTHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             ----H----hhhhhHHHHHccccHHHHHHHHHHHHHHHH
Confidence                1    1122333334 7888888888887777654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.17  E-value=0.00036  Score=55.84  Aligned_cols=86  Identities=9%  Similarity=0.066  Sum_probs=68.8

Q ss_pred             hHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 012448           41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQ  120 (463)
Q Consensus        41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~  120 (463)
                      ++.|+..|++.+  +..+..++.+|..+-        .++..+.|..+|+++++.||..++++++++  ..   .     
T Consensus        24 ~~~L~~~l~d~~--~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i--~~---~-----   83 (111)
T d1te4a_          24 FEPLLESLSNED--WRIRGAAAWIIGNFQ--------DERAVEPLIKLLEDDSGFVRSGAARSLEQI--GG---E-----   83 (111)
T ss_dssp             HHHHHHGGGCSC--HHHHHHHHHHHGGGC--------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHH--CS---H-----
T ss_pred             HHHHHHHHcCCC--HHHHHHHHHHHHhcc--------hhhhHHHHHhhhccchhHHHHHHHHHHHHh--Cc---c-----
Confidence            567888998766  778888887876551        234578899999999999999999999996  22   2     


Q ss_pred             HhhccCcHHHHHHhhcCCchHHHHHHHHHHH
Q 012448          121 LLIDYEIYPLLLDCLINGNEEVATASMDAIK  151 (463)
Q Consensus       121 ~~~~~~l~~~li~~l~d~d~~va~~A~~~L~  151 (463)
                           +.++.+...+.|++..|.+.|+.+|.
T Consensus        84 -----~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          84 -----RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             -----HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             -----chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                 34677778999999999999998875

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.01  E-value=0.00042  Score=55.38  Aligned_cols=102  Identities=12%  Similarity=0.199  Sum_probs=74.7

Q ss_pred             cchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHh
Q 012448           55 PGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDC  134 (463)
Q Consensus        55 ~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~  134 (463)
                      +..+..+...|.++     +    +...+.|..+|+++++.||..+++.++.+   .   ..         +.++.++.+
T Consensus         6 ~~VR~~A~~aL~~~-----~----~~~~~~L~~~l~d~~~~vR~~a~~~L~~~---~---~~---------~~~~~L~~~   61 (111)
T d1te4a_           6 KWVRRDVSTALSRM-----G----DEAFEPLLESLSNEDWRIRGAAAWIIGNF---Q---DE---------RAVEPLIKL   61 (111)
T ss_dssp             CCSSSSCCSSTTSC-----S----STTHHHHHHGGGCSCHHHHHHHHHHHGGG---C---SH---------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-----C----HHHHHHHHHHHcCCCHHHHHHHHHHHHhc---c---hh---------hhHHHHHhh
Confidence            45555555555443     1    12356688899999999999999999874   2   11         346788899


Q ss_pred             hcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHH
Q 012448          135 LINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSL  192 (463)
Q Consensus       135 l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el  192 (463)
                      +.|++..|...|+.+|.+++.          +...+  .|.+.+.+.+..||..+...
T Consensus        62 l~d~~~~VR~~a~~aL~~i~~----------~~~~~--~L~~ll~d~~~~vr~~A~~a  107 (111)
T d1te4a_          62 LEDDSGFVRSGAARSLEQIGG----------ERVRA--AMEKLAETGTGFARKVAVNY  107 (111)
T ss_dssp             HHHCCTHHHHHHHHHHHHHCS----------HHHHH--HHHHHTTSCCTHHHHHHHHH
T ss_pred             hccchhHHHHHHHHHHHHhCc----------cchHH--HHHHHHcCCCHHHHHHHHHH
Confidence            999999999999999998852          23455  67767788889988876554

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=3  Score=38.98  Aligned_cols=229  Identities=14%  Similarity=0.102  Sum_probs=152.4

Q ss_pred             HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448          118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF  197 (463)
Q Consensus       118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia  197 (463)
                      +++-+.+.+++.+++.+|..=+-+-.+.+..+...+.++..|-.       .+             .        +-.|.
T Consensus        61 L~~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~-------~p-------------~--------v~Yl~  112 (330)
T d1upka_          61 LAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTR-------TP-------------T--------VEYIC  112 (330)
T ss_dssp             HHHHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTB-------CH-------------H--------HHHHH
T ss_pred             HHHHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCC-------Cc-------------c--------HHHHH
Confidence            55566677999999999999999999999999998887764211       01             0        11222


Q ss_pred             hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccc----cchhhhh
Q 012448          198 SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSA----TETILRS  273 (463)
Q Consensus       198 ~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~----~dpl~r~  273 (463)
                      .+          .+++..++...++ .|+  -++|=.||+|..+.+..++|+.....+.+..+++..+.    +|.+.--
T Consensus       113 ~~----------~eil~~L~~gye~-~ei--Al~~G~mLREcik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~Tf  179 (330)
T d1upka_         113 TQ----------QNILFMLLKGYES-PEI--ALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATF  179 (330)
T ss_dssp             TC----------THHHHHHHHGGGS-TTT--HHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHH
T ss_pred             cC----------HHHHHHHHhhcCC-cch--hhhhhHHHHHHHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            22          2467777888888 887  67899999999999999999999999999999998765    3333111


Q ss_pred             hhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhh--cCchhHHHHH
Q 012448          274 RAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLL--CLPPAARHVI  351 (463)
Q Consensus       274 ~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~--~~~~~~~~~l  351 (463)
                      +.      ++.--.  ....+-+.++|..|+...=.++++++-..+--++--||.|=.-.....++.+  .++    ..|
T Consensus       180 ke------lLt~hk--~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~~Yvs~~----~nL  247 (330)
T d1upka_         180 KD------LLTRHK--LLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKP----ENL  247 (330)
T ss_dssp             HH------HHHSSH--HHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCH----HHH
T ss_pred             HH------HHHhCH--HHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH----HHH
Confidence            11      111000  0011115667888888766788999999999999999998876666665543  112    333


Q ss_pred             HHHHhhccch---hhHhHHhhhHHHhcCCC--chhhhhhhhhHHHHHHHHHHHHH
Q 012448          352 DAAFDRQGHG---KQLAALHGLANIAGKTR--SEDKIILNADAEESLRHLIYEVA  401 (463)
Q Consensus       352 ~~~~~~~~~~---~k~r~L~al~~Il~~~r--~~~~~il~~~~e~~l~~~~ye~~  401 (463)
                      +.+....++.   .+..|.|-+..+...++  ++...|+-..-+. |.+.. +.+
T Consensus       248 kl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~k-Ll~fl-~~f  300 (330)
T d1upka_         248 KLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAK-LIEFL-SKF  300 (330)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHH-HHHHH-HHT
T ss_pred             HHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHH-HHHHH-HhC
Confidence            4444444432   28888888888777664  3355555444444 55444 443

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.39  E-value=0.21  Score=45.09  Aligned_cols=109  Identities=12%  Similarity=0.015  Sum_probs=55.1

Q ss_pred             HHHHhhcCCCHHHHHHHHHHH-----HHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448           84 FVQVGLTADSHSVKRLACKTV-----TCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN  158 (463)
Q Consensus        84 ~l~~gL~h~~~~Vr~Lal~~l-----~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~  158 (463)
                      .|...++++++.||..++..+     ..++.+. + .. +-..+...--.+.++.++.|++..|-..++..|.       
T Consensus       118 ~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~-d-~~-VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~-------  187 (233)
T d1lrva_         118 QLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDE-D-RQ-VRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLR-------  187 (233)
T ss_dssp             GGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCS-C-HH-HHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCC-------
T ss_pred             HHHHHhcCCCHHHHHHHHhccchhHHHHHhcCC-C-HH-HHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcC-------
Confidence            344556677777777766542     1111111 0 11 1122211112234455666666666666654431       


Q ss_pred             CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHH
Q 012448          159 GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILE  234 (463)
Q Consensus       159 ~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnale  234 (463)
                             +   +  .|..++...|..||..+-+                   .+-+.++..|.+ +|..||..+++
T Consensus       188 -------~---~--~L~~l~~D~d~~VR~aaae-------------------~~~~~ll~~L~D-~d~~VR~aA~~  231 (233)
T d1lrva_         188 -------G---D--DLLELLHDPDWTVRLAAVE-------------------HASLEALRELDE-PDPEVRLAIAG  231 (233)
T ss_dssp             -------G---G--GGGGGGGCSSHHHHHHHHH-------------------HSCHHHHHHCCC-CCHHHHHHHHC
T ss_pred             -------c---H--HHHHHHhCCCHHHHHHHHH-------------------hccHHHHHHhCC-CCHHHHHHHHH
Confidence                   0   1  3333555666666655421                   123456778888 89988887764

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.10  E-value=1.3  Score=45.75  Aligned_cols=61  Identities=18%  Similarity=0.128  Sum_probs=48.3

Q ss_pred             cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448           90 TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN  158 (463)
Q Consensus        90 ~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~  158 (463)
                      .++.+.+|..+++.+++..+....  .    .+  ..+++.++.+|.+++..|...|+.++..+.....
T Consensus       468 ~~~~~~lr~~~~~~i~~~~~~~~~--~----~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~  528 (959)
T d1wa5c_         468 NIPHIILRVDAIKYIYTFRNQLTK--A----QL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (959)
T ss_dssp             SCSCHHHHHHHHHHHHHTGGGSCH--H----HH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             CCchHHHHHHHHHHHHHHHhhccH--H----HH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhc
Confidence            456788999999999997664411  1    11  2589999999999999999999999999986543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.50  E-value=0.35  Score=43.57  Aligned_cols=21  Identities=5%  Similarity=-0.183  Sum_probs=16.1

Q ss_pred             HHHHhhcCCCCcHHHHHhHHHH
Q 012448          214 TLLEEGVSKKNDTLETLSILEL  235 (463)
Q Consensus       214 ~~ll~eL~~~~DvLv~lnalel  235 (463)
                      +.+...++| +|..||.++++-
T Consensus       165 ~~L~~l~~D-~d~~VR~~aa~~  185 (233)
T d1lrva_         165 ESLGLMTQD-PEPEVRRIVASR  185 (233)
T ss_dssp             GGGGGSTTC-SSHHHHHHHHHH
T ss_pred             HHHHHHccC-CCHHHHHHHHHh
Confidence            455666788 899999998863