Citrus Sinensis ID: 012527

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
Protein Sequence
MVSILAFASNSSTDSCCTTSSRLSCFAPLLKPNPIKFLKKKPRKCHSFNKILAAAAASSSSSARQQIEDGSAEQFLENNSIADFMRFKRGSNGGGSGQLQTAVVTYRKKFPWSLLPPFLQVDLVSTIHIADKEYFETLQRELELYDCVLYEMVASRESLEKRRNSVDTKKLKGSRSRGFNILGCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLFTFARDMTLKSTKAMVQPSIPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWITAWSIRNRDLSSSSFPFLKTMAEVLGWPLNRYQTLALLIFSSVLALDLWFWELFFGTTVNWISQIASEVHQYVEPM
Secondary Structure (PSIPRED)
ccEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHcccccccEEEEEcccccccccEEEEEEEEEEcccccccccccEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEccHHHHHHcccccccccccccccccccccHHHHHHHHHHHccHHHccccccccccEEEEcccHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccEEEEcccHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHcccccccEEEEEEEEEcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccccccccccccHHHHHHcHccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccHHHHHEEEEccccccccEHEEEEEEEcccccHHHcccccEEEEEEEEEcccHHHHHHHHHHHHcccEEEEEEEccHHHHHccccccHHHcccccccccccHHHHHHHHHHHHHcccEEEHHEccccccEEEEcccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccEEEcHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHcccccccEEEEEEEEEccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MVSILAFAsnsstdsccttssrlscfapllkpnpikflkkkprkcHSFNKILAAAAASSSSSARQQiedgsaeqflennsiadfmrfkrgsngggsgqLQTAVVTYrkkfpwsllppflqvdLVSTIHIADKEYFETLQRELELYDCVLYEMVASRESLEKRRnsvdtkklkgsrsrgfNILGCIQRQMARILMLDFQLDCLDyqaenwyhadldyETFKLLQLEKGESLFTFARDMTlkstkamvqpsipkdldpwrsKLLWasrvlpmpLVGLLIIGSvcadvgsqppeypelealSMLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAIDEGHNRIAIlyggghmpdlGRRLREEFDLLPSRVQWITAWSirnrdlssssfpFLKTMAEVLGWPLNRYQTLALLIFSSVLALDLWFWELFFGTTVNWISQIASEVHQYVEPM
Flexible Loop (DISEMBL)
MVSILAFAsnsstdscCTTSSRLSCFAPLLKPNPIKFLKKKPRKCHSFNKILAAAAASSSSSARQQIEDGSAEQFLENNSIADFMRFKRGSNGGGSGQLQTAVVTYRKKFPWSLLPPFLQVDLVSTIHIADKEYFETLQRELELYDCVLYEMVAsreslekrrnsvdtkklkgsrsrgfniLGCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLFTFARDMTLkstkamvqpsipkdldpWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAKRLTSEftqvtadveessviigeRNRAAIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWITAWSIRNRDLSSSSFPFLKTMAEVLGWPLNRYQTLALLIFSSVLALDLWFWELFFGTTVNWISQIASEVHQYVEPM
Low Complexity Region (SEG)
MVSILAFAsnsstdsccttssrlscFAPLLKPNPIKFLKKKPRKCHSFNKILaaaaasssssaRQQIEDGSAEQFLENNSIADFMRFKRGSNGGGSGQLQTAVVTYRKKFPWSLLPPFLQVDLVSTIHIADKEYFETLQRELELYDCVLYEMVASRESLEKRRNSVDTKKLKGSRSRGFNILGCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLFTFARDMTLKSTKAMVQPSIPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWITAWSIRNRDLSSSSFPFLKTMAEVLGWPLNRYQTLALLIFSSVLALDLWFWELFFGTTVNWISQIASEVHQYVEPM
Disordered region (IsUnstruct)
***************CCTTSSRLSCFAPLLKPNPIKFLKKKPRKCHSFNKILA********************************************QLQTAVVTYRKKFPWSLLPPFLQVDLVSTIHIADKEYFETLQRELELYDCVLYEMVA***********************GFNILGCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLFTFARDMTLKSTKAMVQPSIPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWITAWSIRNRDLSSSSFPFLKTMAEVLGWPLNRYQTLALLIFSSVLALDLWFWELFFGTTVNWISQIASEVHQY****
Disordered Region (DISOPRED)
**SI****************************************************************************IADFMRFKRGSNGGGSGQLQTAVVTYRKKFPWSLLPPFLQVDLVSTIHIADKEYFETLQRELELYDCVLYEMVA******************************IQRQMARILMLDFQLDCLDYQAENWYHADLDYETF************************************PWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAK****************SVIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWITAWSIRN*********FLKTMAEVLGWPLNRYQTLALLIFSSVLALDLWFWELFFGTTVNWISQIASEVHQYVEP*
Disordered Region (DISEMBL)
*******************SSRLSCFAPLLKPNPIKFLKKKPRKCHSFNKILA****************GSAEQFLENNSIADFMRFKRGSNGGGSGQLQTAVVTYRKKFPWSLLPPFLQVDLVSTIHIADKEYFETLQRELELYDCVLYEMVASRESLEKRRNSVDTKKLKGSRSRGFNILGCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLFTFARDMTLKSTKAMVQPSIPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWITAWSIRNRDLSSSSFPFLKTMAEVLGWPLNRYQTLALLIFSSVLALDLWFWELFFGTTVNWISQIASEVHQYVEPM
Disordered Region (DISPRO)
*VSILAFASNSSTDSCCTTSSRLSCFAPLLKPNPIKFLKKKPRKCHSFNKILAAAAASS*************EQ*LENNSIADFMRFKRGSNGGGSGQLQTAVVTYRKKFPWSLLPPFLQVDLVSTIHIADKEYFETLQRELELYDCVLYEMVASRESLE*************SRSRGFNILGCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLFTFARDMTLKSTKAMVQPSIPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWITAWSIRNRDLSSSSFPFLKTMAEVLGWPLNRYQTLALLIFSSVLALDLWFWELFFGTTVNWISQIASEVHQYVEPM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSILAFASNSSTDSCCTTSSRLSCFAPLLKPNPIKFLKKKPRKCHSFNKILAAAAASSSSSARQQIEDGSAEQFLENNSIADFMRFKRGSNGGGSGQLQTAVVTYRKKFPWSLLPPFLQVDLVSTIHIADKEYFETLQRELELYDCVLYEMVASRESLEKRRNSVDTKKLKGSRSRGFNILGCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLFTFARDMTLKSTKAMVQPSIPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWITAWSIRNRDLSSSSFPFLKTMAEVLGWPLNRYQTLALLIFSSVLALDLWFWELFFGTTVNWISQIASEVHQYVEPM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
225445238	444	PREDICTED: uncharacterized protein LOC10	0.947	0.984	0.784	0.0
224143542	468	predicted protein [Populus trichocarpa]	0.960	0.946	0.771	0.0
363807106	464	uncharacterized protein LOC100795956 [Gl	0.887	0.881	0.781	0.0
356520553	464	PREDICTED: uncharacterized protein LOC10	0.872	0.866	0.792	0.0
449527169	437	PREDICTED: uncharacterized protein LOC10	0.921	0.972	0.743	0.0
449464676	444	PREDICTED: uncharacterized protein LOC10	0.921	0.957	0.743	0.0
255546481	458	conserved hypothetical protein [Ricinus	0.943	0.949	0.732	0.0
357500763	488	hypothetical protein MTR_6g088460 [Medic	0.850	0.803	0.755	1e-177
388520223	451	unknown [Medicago truncatula]	0.850	0.869	0.755	1e-177
15239771	462	uncharacterized protein [Arabidopsis tha	0.867	0.865	0.722	1e-171

>gi|225445238|ref|XP_002280972.1| PREDICTED: uncharacterized protein LOC100249177 [Vitis vinifera] gi|297738826|emb|CBI28071.3| unnamed protein product [Vitis vinifera]

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/450 (78%), Positives = 381/450 (84%), Gaps = 13/450 (2%)

Query: 11  SSTDSCCTTSSRLSCFAPLLKPNPIKFLKKKPRKCHSFNKILAAAAASSSSSARQQIEDG 70
           +ST       +RL  F     PNP     + P    SF K  A++   S+      +E G
Sbjct: 2   ASTSLSVPVPTRLRPFNSS-NPNP-----RFPTSSASF-KFFASSLKPSTP-----VEHG 49

Query: 71  SAEQFLENNSIADFMRFKRGSNGGGSGQLQTAVVTYRKKFPWSLLPPFLQVDLVSTIHIA 130
           SA+ FL+NNSIADFMRFK+G  GG +G+LQTAVVTYRKKFPWSLL PFLQVDLVSTIHIA
Sbjct: 50  SADHFLQNNSIADFMRFKKGILGGSNGELQTAVVTYRKKFPWSLLQPFLQVDLVSTIHIA 109

Query: 131 DKEYFETLQRELELYDCVLYEMVASRESLEKRRNSVDTKKLKGSRSRGFNILGCIQRQMA 190
           DKEYF TLQ+ELE YDCVLYEMVASRESLE RRN   TK+LK SRSRGFNILGCIQRQMA
Sbjct: 110 DKEYFATLQKELEPYDCVLYEMVASRESLENRRNPAATKRLKSSRSRGFNILGCIQRQMA 169

Query: 191 RILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLFTFARDMTLKSTKAMVQP-S 249
           R+LMLDFQLDCLDYQAENWYHADLDYETFKLLQ+EKGES FTFARDMTLKSTKAMV P S
Sbjct: 170 RVLMLDFQLDCLDYQAENWYHADLDYETFKLLQVEKGESFFTFARDMTLKSTKAMVLPAS 229

Query: 250 IPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKV 309
           IP++L  WRSKLLWASRVLPMPLVGLLIIGSVCAD G+Q  EYPELEALS LDFGAAMKV
Sbjct: 230 IPENLGFWRSKLLWASRVLPMPLVGLLIIGSVCADTGTQASEYPELEALSRLDFGAAMKV 289

Query: 310 FLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMPDLGR 369
           FLAKRLTSEFTQVTADVEE SVIIGERNRAA+EALRRA+DEGHN+IAILYGGGHMPDLGR
Sbjct: 290 FLAKRLTSEFTQVTADVEEKSVIIGERNRAAVEALRRAMDEGHNKIAILYGGGHMPDLGR 349

Query: 370 RLREEFDLLPSRVQWITAWSIRNRDLSSSSFPFLKTMAEVLGWPLNRYQTLALLIFSSVL 429
           RLREEFDL+PS+VQW+TAWSIRNR L SSS PFLK MAEV GWPLNRYQTLAL IFSSVL
Sbjct: 350 RLREEFDLIPSQVQWVTAWSIRNRYLKSSSLPFLKAMAEVSGWPLNRYQTLALAIFSSVL 409

Query: 430 ALDLWFWELFFGTTVNWISQIASEVHQYVE 459
           ALDLWFWELFFGT VNW+S + S+V QYVE
Sbjct: 410 ALDLWFWELFFGTAVNWVSHLGSQVVQYVE 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143542|ref|XP_002324991.1| predicted protein [Populus trichocarpa] gi|222866425|gb|EEF03556.1| predicted protein [Populus trichocarpa]

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/450 (77%), Positives = 383/450 (85%), Gaps = 7/450 (1%)

Query: 9   SNSSTDSCCTTSSRLSCFAPLLKPNPIKFLKKKPRKCHSFNKILAAAAASSSSSARQQIE 68
           SNS++D   T++   S         PIK            ++ILA      SSS +   +
Sbjct: 19  SNSTSDLYSTSTPLRSILEFKNNSKPIKTSPIFRLSLQQSSRILAF-----SSSNKNNNQ 73

Query: 69  DGSAEQFLENNSIADFMRFKRGSNGGGSGQLQTAVVTYRKKFPWSLLPPFLQVDLVSTIH 128
           DGSAEQFLENNSIADFMRFK+GS+   S +LQTAVV+Y+K+FPWS+L PF QVDLVSTIH
Sbjct: 74  DGSAEQFLENNSIADFMRFKKGSDRS-SAELQTAVVSYKKRFPWSILYPFFQVDLVSTIH 132

Query: 129 IADKEYFETLQRELELYDCVLYEMVASRESLEKRRNSVDTKKLKGSRSRGFNILGCIQRQ 188
           IADKEYFET+Q+ELE YD VLYEMVASRESLE RRN+   K++KGSRSRGFNILGCIQRQ
Sbjct: 133 IADKEYFETIQKELEPYDRVLYEMVASRESLESRRNTAAAKRMKGSRSRGFNILGCIQRQ 192

Query: 189 MARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLFTFARDMTLKSTKAMVQP 248
           MARIL LDFQLD LDYQAENWYHADLDYETFK+LQLEKGES  TFARDMTLKSTKAMVQP
Sbjct: 193 MARILTLDFQLDYLDYQAENWYHADLDYETFKILQLEKGESFLTFARDMTLKSTKAMVQP 252

Query: 249 SIPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMK 308
           +IP+DL PWRSKLLWASRVLPMPLVGL IIG+VC D GS   EYPELEALS LDFGAA+K
Sbjct: 253 AIPEDLGPWRSKLLWASRVLPMPLVGLFIIGTVC-DTGSPASEYPELEALSRLDFGAAVK 311

Query: 309 VFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMPDLG 368
           VFLAKRLTSEFTQVTAD+EE SVIIGERN+AA+EALRRAI+EGHN+IAILYGGGHMPDLG
Sbjct: 312 VFLAKRLTSEFTQVTADLEEESVIIGERNKAAVEALRRAINEGHNKIAILYGGGHMPDLG 371

Query: 369 RRLREEFDLLPSRVQWITAWSIRNRDLSSSSFPFLKTMAEVLGWPLNRYQTLALLIFSSV 428
           RRLREEFDL+P  VQWITAWSIRNR L+S+S PFL+TMAEVLGWPLNRYQTLALLIFSSV
Sbjct: 372 RRLREEFDLVPCGVQWITAWSIRNRVLNSNSLPFLRTMAEVLGWPLNRYQTLALLIFSSV 431

Query: 429 LALDLWFWELFFGTTVNWISQIASEVHQYV 458
           LA+DLWFWELFFG+TVNWISQIASEV QYV
Sbjct: 432 LAIDLWFWELFFGSTVNWISQIASEVGQYV 461

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807106|ref|NP_001242080.1| uncharacterized protein LOC100795956 [Glycine max] gi|255641605|gb|ACU21075.1| unknown [Glycine max]

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/412 (78%), Positives = 366/412 (88%), Gaps = 3/412 (0%)

Query: 53  AAAAASSSSSARQQIEDGSAEQFLENNSIADFMRFKRGSNGGGSGQLQTAVVTYRKKFPW 112
           +A   +SSSS     E+GS EQFL++NSIADFMRFKR  +GG S +LQTA+V+YRK+FPW
Sbjct: 52  SATLRASSSSVSTPHENGSPEQFLKSNSIADFMRFKRRVDGGASAELQTALVSYRKRFPW 111

Query: 113 SLLPPFLQVDLVSTIHIADKEYFETLQRELELYDCVLYEMVASRESLEKRRNSVDTKKLK 172
           SLL PFLQVDLVSTIHIAD+EYF  LQ+ELE YDCVLYEMVASRESLE RRN+ +TK+LK
Sbjct: 112 SLLRPFLQVDLVSTIHIADEEYFPALQKELESYDCVLYEMVASRESLENRRNATNTKRLK 171

Query: 173 GSRSRGFNILGCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLFT 232
            SR+RGFNILGCIQRQMARIL LDFQLDCL+Y++ NWYHADLDYETFKLL+LEKGES F+
Sbjct: 172 SSRTRGFNILGCIQRQMARILTLDFQLDCLNYESSNWYHADLDYETFKLLRLEKGESFFS 231

Query: 233 FARDMTLKSTKAMVQP-SIPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPE 291
           FA+DMTLKSTKA++QP SIP+DLDP RSKLLWASRVLPMPLVGLLIIG VC DVG+Q  E
Sbjct: 232 FAKDMTLKSTKAVLQPASIPEDLDPLRSKLLWASRVLPMPLVGLLIIGGVCTDVGTQASE 291

Query: 292 YPELEALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAIDEG 351
           YPE+EALS LDFGAA+KVFLAKRLTSEFT VTADVEE SVIIGERNR AIEALR A+D+G
Sbjct: 292 YPEIEALSRLDFGAALKVFLAKRLTSEFTLVTADVEEKSVIIGERNRVAIEALRAAMDKG 351

Query: 352 HNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWITAWSIRNRDLSSSSFPFLKTMAEVLG 411
           HN+IAILYGGGHMPDLGRRLRE+FDL+PS VQWITAWSI  +DL++ SFPFLKT+A+  G
Sbjct: 352 HNKIAILYGGGHMPDLGRRLREDFDLVPSNVQWITAWSITKKDLNTDSFPFLKTIAKASG 411

Query: 412 WPLNRYQTLALLIFSSVLALDLWFWELFFGTTVNWISQIASEVHQYVE--PM 461
           WPLNRYQTLAL IFSSVLALDLWFWELFFGT VNW+S++ SE+ +YV+  PM
Sbjct: 412 WPLNRYQTLALPIFSSVLALDLWFWELFFGTAVNWVSELGSELLRYVDNSPM 463

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520553|ref|XP_003528926.1| PREDICTED: uncharacterized protein LOC100790976 [Glycine max]

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/405 (79%), Positives = 365/405 (90%), Gaps = 3/405 (0%)

Query: 56  AASSSSSARQQIEDGSAEQFLENNSIADFMRFKRGSNGGGSGQLQTAVVTYRKKFPWSLL 115
           A+SSS SA Q  E+GS EQFL++NSIADF+RFKR ++GG S +LQTA+V+Y+K+FPWSL+
Sbjct: 57  ASSSSVSAPQ--ENGSPEQFLKSNSIADFLRFKRRADGGVSAELQTALVSYKKRFPWSLM 114

Query: 116 PPFLQVDLVSTIHIADKEYFETLQRELELYDCVLYEMVASRESLEKRRNSVDTKKLKGSR 175
            PFLQVDLVSTIHIAD+EYF  LQ+ELE YDCVLYEMVASRESLE RRN+  TK+LK SR
Sbjct: 115 RPFLQVDLVSTIHIADEEYFLALQKELESYDCVLYEMVASRESLENRRNATTTKRLKSSR 174

Query: 176 SRGFNILGCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLFTFAR 235
           +RGFNILGCIQRQMA IL LDFQLDCL+Y++ NWYHADLDYETFKLLQLEKGES F+FA+
Sbjct: 175 TRGFNILGCIQRQMALILTLDFQLDCLNYESSNWYHADLDYETFKLLQLEKGESFFSFAK 234

Query: 236 DMTLKSTKAMVQP-SIPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPE 294
           DMTLKSTKA++QP SIP+DLDP RSKLLWASRVLPMPLVGLLIIG VC DVGSQ  EYPE
Sbjct: 235 DMTLKSTKAVLQPASIPEDLDPLRSKLLWASRVLPMPLVGLLIIGGVCTDVGSQASEYPE 294

Query: 295 LEALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAIDEGHNR 354
           +EALS LDFGAA+KVFLAKRLTSEFT VTADVEE SVIIGERNR AIEALR A+++GHN+
Sbjct: 295 IEALSRLDFGAALKVFLAKRLTSEFTLVTADVEEKSVIIGERNRVAIEALRAAMEKGHNK 354

Query: 355 IAILYGGGHMPDLGRRLREEFDLLPSRVQWITAWSIRNRDLSSSSFPFLKTMAEVLGWPL 414
           IAILYGGGHMPDLGRRLRE+FDL+PS VQWITAWSI  +DL++ SFPFLKT+A+  GWPL
Sbjct: 355 IAILYGGGHMPDLGRRLREDFDLVPSNVQWITAWSITKKDLNTDSFPFLKTIAKASGWPL 414

Query: 415 NRYQTLALLIFSSVLALDLWFWELFFGTTVNWISQIASEVHQYVE 459
           NRYQTLALLIFSSVLALDLWFWELFFGT VNW+S++ SE+ QYV+
Sbjct: 415 NRYQTLALLIFSSVLALDLWFWELFFGTAVNWVSELGSELLQYVD 459

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527169|ref|XP_004170585.1| PREDICTED: uncharacterized protein LOC101225879, partial [Cucumis sativus]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/429 (74%), Positives = 361/429 (84%), Gaps = 4/429 (0%)

Query: 32  PNPIKFLKKKPRKCHSFNKILAAAAASSSSSARQQIEDGSAEQFLENNSIADFMRFKRGS 91
           P    F     R   SF        ASSSS++ Q  +D S + F +NNSIADFMRFKR  
Sbjct: 7   PTKFPFFSDSSRFPKSFRLFRCQIPASSSSASNQLRDDASPDPFFQNNSIADFMRFKRD- 65

Query: 92  NGGGSGQLQTAVVTYRKKFPWSLLPPFLQVDLVSTIHIADKEYFETLQRELELYDCVLYE 151
             G S +LQTA+V+Y+KKFPWS+L PF+QVDLVSTIHIADKEYF+ LQ+ELE YD +LYE
Sbjct: 66  --GPSAELQTAIVSYKKKFPWSILQPFVQVDLVSTIHIADKEYFKALQKELESYDSILYE 123

Query: 152 MVASRESLEKRRNSVDTKKLKGSRSRGFNILGCIQRQMARILMLDFQLDCLDYQAENWYH 211
           MVAS+ESLE R+N    KKLK SRSRG NILGCIQRQMAR+L LDFQLDCLDYQA NWYH
Sbjct: 124 MVASKESLENRKNPAAMKKLKSSRSRGLNILGCIQRQMARVLTLDFQLDCLDYQASNWYH 183

Query: 212 ADLDYETFKLLQLEKGESLFTFARDMTLKSTKAMVQPS-IPKDLDPWRSKLLWASRVLPM 270
           ADLDYETF++LQ EKGE+ FTFARDMT++STKAMVQP+ +P+DL+PW+SKLLWASRVLPM
Sbjct: 184 ADLDYETFRILQTEKGENFFTFARDMTIRSTKAMVQPTTVPEDLEPWKSKLLWASRVLPM 243

Query: 271 PLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESS 330
           PLVGLLIIGSVCAD GSQ  E+PE EALS LD GAAMKVFLAKRLTSEFTQVTA+VEESS
Sbjct: 244 PLVGLLIIGSVCADGGSQASEFPEFEALSRLDLGAAMKVFLAKRLTSEFTQVTAEVEESS 303

Query: 331 VIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWITAWSI 390
           VIIGERN+AA EALR A+D+GHNRIAILYGGGHMPDLGRRLREEFDL+P RV+WITAWSI
Sbjct: 304 VIIGERNKAATEALRDALDKGHNRIAILYGGGHMPDLGRRLREEFDLIPCRVKWITAWSI 363

Query: 391 RNRDLSSSSFPFLKTMAEVLGWPLNRYQTLALLIFSSVLALDLWFWELFFGTTVNWISQI 450
             R L SSS PFLK +A+V GWPLNRYQTLALLIFSSVLA+DLWFWELFFGT  NWIS++
Sbjct: 364 TKRKLGSSSLPFLKALADVSGWPLNRYQTLALLIFSSVLAVDLWFWELFFGTAANWISEV 423

Query: 451 ASEVHQYVE 459
           A EV+QY++
Sbjct: 424 ALEVYQYID 432

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464676|ref|XP_004150055.1| PREDICTED: uncharacterized protein LOC101202949, partial [Cucumis sativus]

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/429 (74%), Positives = 361/429 (84%), Gaps = 4/429 (0%)

Query: 32  PNPIKFLKKKPRKCHSFNKILAAAAASSSSSARQQIEDGSAEQFLENNSIADFMRFKRGS 91
           P    F     R   SF        ASSSS++ Q  +D S + F +NNSIADFMRFKR  
Sbjct: 14  PTKFPFFSDSSRFPKSFRLFRCQIPASSSSASNQLRDDASPDPFFQNNSIADFMRFKRD- 72

Query: 92  NGGGSGQLQTAVVTYRKKFPWSLLPPFLQVDLVSTIHIADKEYFETLQRELELYDCVLYE 151
             G S +LQTA+V+Y+KKFPWS+L PF+QVDLVSTIHIADKEYF+ LQ+ELE YD +LYE
Sbjct: 73  --GPSAELQTAIVSYKKKFPWSILQPFVQVDLVSTIHIADKEYFKALQKELESYDSILYE 130

Query: 152 MVASRESLEKRRNSVDTKKLKGSRSRGFNILGCIQRQMARILMLDFQLDCLDYQAENWYH 211
           MVAS+ESLE R+N    KKLK SRSRG NILGCIQRQMAR+L LDFQLDCLDYQA NWYH
Sbjct: 131 MVASKESLENRKNPAAMKKLKSSRSRGLNILGCIQRQMARVLTLDFQLDCLDYQASNWYH 190

Query: 212 ADLDYETFKLLQLEKGESLFTFARDMTLKSTKAMVQPS-IPKDLDPWRSKLLWASRVLPM 270
           ADLDYETF++LQ EKGE+ FTFARDMT++STKAMVQP+ +P+DL+PW+SKLLWASRVLPM
Sbjct: 191 ADLDYETFRILQTEKGENFFTFARDMTIRSTKAMVQPTTVPEDLEPWKSKLLWASRVLPM 250

Query: 271 PLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESS 330
           PLVGLLIIGSVCAD GSQ  E+PE EALS LD GAAMKVFLAKRLTSEFTQVTA+VEESS
Sbjct: 251 PLVGLLIIGSVCADGGSQASEFPEFEALSRLDLGAAMKVFLAKRLTSEFTQVTAEVEESS 310

Query: 331 VIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMPDLGRRLREEFDLLPSRVQWITAWSI 390
           VIIGERN+AA EALR A+D+GHNRIAILYGGGHMPDLGRRLREEFDL+P RV+WITAWSI
Sbjct: 311 VIIGERNKAATEALRDALDKGHNRIAILYGGGHMPDLGRRLREEFDLIPCRVKWITAWSI 370

Query: 391 RNRDLSSSSFPFLKTMAEVLGWPLNRYQTLALLIFSSVLALDLWFWELFFGTTVNWISQI 450
             R L SSS PFLK +A+V GWPLNRYQTLALLIFSSVLA+DLWFWELFFGT  NWIS++
Sbjct: 371 TKRKLGSSSLPFLKALADVSGWPLNRYQTLALLIFSSVLAVDLWFWELFFGTAANWISEV 430

Query: 451 ASEVHQYVE 459
           A EV+QY++
Sbjct: 431 ALEVYQYID 439

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546481|ref|XP_002514300.1| conserved hypothetical protein [Ricinus communis] gi|223546756|gb|EEF48254.1| conserved hypothetical protein [Ricinus communis]

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/459 (73%), Positives = 380/459 (82%), Gaps = 24/459 (5%)

Query: 6   AFASNSSTDSCCTTSSRLSCFAPLLKPNPIKFLKKKP-----RKCHSFNKILAAAAASSS 60
           +F SN S DS               K N +K L K+P     R  H+ + I   A +SSS
Sbjct: 16  SFPSNHSNDS---------------KSN-LKSLSKQPKFASLRFSHTSSLINIVAFSSSS 59

Query: 61  SSARQQIEDGSAEQFLENNSIADFMRFKRGSNGGGSGQLQTAVVTYRKKFPWSLLPPFLQ 120
           ++  Q IED S +QF +NNSIADFMRFKRG++    G+LQTA+V+Y+K+FPWSLL PFL+
Sbjct: 60  NNNSQSIEDDSTDQFSQNNSIADFMRFKRGTDTS-KGELQTALVSYKKRFPWSLLNPFLR 118

Query: 121 VDLVSTIHIADKEYFETLQRELELYDCVLYEMVASRESLEKRRNSVDTKKLKGSRSRGFN 180
           VDLVSTIHIADK+YF TLQ+ELE YDCVLYEMVASRE LE RR+    K+L+ SRSRGFN
Sbjct: 119 VDLVSTIHIADKDYFTTLQKELEPYDCVLYEMVASREILENRRDPAAIKRLRSSRSRGFN 178

Query: 181 ILGCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLFTFARDMTLK 240
           I+G IQRQMARILMLDFQLDCLDYQAENWYHADLDYETF+LLQ EKGES FTFARDMT++
Sbjct: 179 IIGFIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFRLLQHEKGESFFTFARDMTIR 238

Query: 241 STKAMVQ-PSIPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALS 299
           STKAMVQ  SIP +L PWRSKLLWASRVLPMPLVGLLIIG VC DVGSQ  EYPELEALS
Sbjct: 239 STKAMVQSTSIPAELGPWRSKLLWASRVLPMPLVGLLIIGGVC-DVGSQASEYPELEALS 297

Query: 300 MLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAIDEGHNRIAILY 359
            LDFGAAMK+FLAKRLTSEFTQVT D+EE SVIIGERN+AA+EAL+RAI++GHN+IA+LY
Sbjct: 298 RLDFGAAMKLFLAKRLTSEFTQVTTDMEEKSVIIGERNKAAMEALKRAINDGHNKIAVLY 357

Query: 360 GGGHMPDLGRRLREEFDLLPSRVQWITAWSIRNRDLSSSSFPFLKTMAEVLGWPLNRYQT 419
           GGGHMPD GRRLREEFDL+PS VQWITAWSIR R L+S+SFPFL  MA+V GWPLNRYQT
Sbjct: 358 GGGHMPDFGRRLREEFDLIPSEVQWITAWSIRQRRLNSTSFPFLTRMAQVSGWPLNRYQT 417

Query: 420 LALLIFSSVLALDLWFWELFFGTTVNWISQIASEVHQYV 458
           LALLIFS+VLA+DLWFWELFFGTT NWISQIA +V QYV
Sbjct: 418 LALLIFSTVLAIDLWFWELFFGTTANWISQIAYQVIQYV 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500763|ref|XP_003620670.1| hypothetical protein MTR_6g088460 [Medicago truncatula] gi|355495685|gb|AES76888.1| hypothetical protein MTR_6g088460 [Medicago truncatula]

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 297/393 (75%), Positives = 342/393 (87%), Gaps = 1/393 (0%)

Query: 66  QIEDGSAEQFLENNSIADFMRFKRGSNGGGSGQLQTAVVTYRKKFPWSLLPPFLQVDLVS 125
           Q E+GS EQFL++NSIADFMRFK+G +G  +G LQTAVV Y+KKFPWSLL P LQVDL+S
Sbjct: 58  QQENGSPEQFLQSNSIADFMRFKKGIDGS-TGLLQTAVVKYKKKFPWSLLKPNLQVDLIS 116

Query: 126 TIHIADKEYFETLQRELELYDCVLYEMVASRESLEKRRNSVDTKKLKGSRSRGFNILGCI 185
           TIHIAD+EYF  LQ+ELE YDCVLYEMVAS+++LEK RN    K+LK S++RGFNI+GCI
Sbjct: 117 TIHIADEEYFLALQKELESYDCVLYEMVASKKTLEKMRNPKAKKRLKRSQTRGFNIIGCI 176

Query: 186 QRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLFTFARDMTLKSTKAM 245
           QRQMA+IL LDFQLDCL+YQ+ENW HADLDYETF+LLQ  KGESLF+FA+D TL+STKAM
Sbjct: 177 QRQMAQILKLDFQLDCLNYQSENWQHADLDYETFQLLQEAKGESLFSFAKDTTLRSTKAM 236

Query: 246 VQPSIPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGA 305
           +QPSIP+DLDPWRSKLLWASRVLPMPLVGL +IGSVCA+VGS   EYPE+EALS LD  A
Sbjct: 237 LQPSIPEDLDPWRSKLLWASRVLPMPLVGLFLIGSVCANVGSPASEYPEIEALSRLDVSA 296

Query: 306 AMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMP 365
           AMK+FLAK LTS+ TQ TADVEE SVIIGERNR AIE LRRA+D+G N+IAILYGGGHMP
Sbjct: 297 AMKLFLAKSLTSDLTQNTADVEEKSVIIGERNRVAIENLRRAMDKGQNKIAILYGGGHMP 356

Query: 366 DLGRRLREEFDLLPSRVQWITAWSIRNRDLSSSSFPFLKTMAEVLGWPLNRYQTLALLIF 425
           DLGRRLREEFDL+P  V+W+TAWSIR R L +SS PFLKTMA   GWPLNRYQTLALLIF
Sbjct: 357 DLGRRLREEFDLVPYGVEWVTAWSIRKRKLDTSSLPFLKTMARASGWPLNRYQTLALLIF 416

Query: 426 SSVLALDLWFWELFFGTTVNWISQIASEVHQYV 458
           SS+LA+DLWFWELFFGT V W+S + +E+ +YV
Sbjct: 417 SSILAVDLWFWELFFGTMVTWVSDVTTEILRYV 449

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520223|gb|AFK48173.1| unknown [Medicago truncatula]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 297/393 (75%), Positives = 342/393 (87%), Gaps = 1/393 (0%)

Query: 66  QIEDGSAEQFLENNSIADFMRFKRGSNGGGSGQLQTAVVTYRKKFPWSLLPPFLQVDLVS 125
           Q E+GS EQFL++NSIADFMRFK+G +G  +G LQTAVV Y+KKFPWSLL P LQVDL+S
Sbjct: 58  QQENGSPEQFLQSNSIADFMRFKKGIDGS-TGLLQTAVVKYKKKFPWSLLKPNLQVDLIS 116

Query: 126 TIHIADKEYFETLQRELELYDCVLYEMVASRESLEKRRNSVDTKKLKGSRSRGFNILGCI 185
           TIHIAD+EYF  LQ+ELE YDCVLYEMVAS+++LEK RN    K+LK S++RGFNI+GCI
Sbjct: 117 TIHIADEEYFLALQKELESYDCVLYEMVASKKTLEKMRNPKAKKRLKRSQTRGFNIIGCI 176

Query: 186 QRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLFTFARDMTLKSTKAM 245
           QRQMA+IL LDFQLDCL+YQ+ENW HADLDYETF+LLQ  KGESLF+FA+D TL+STKAM
Sbjct: 177 QRQMAQILKLDFQLDCLNYQSENWQHADLDYETFQLLQEAKGESLFSFAKDTTLRSTKAM 236

Query: 246 VQPSIPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGA 305
           +QPSIP+DLDPWRSKLLWASRVLPMPLVGL +IGSVCA+VGS   EYPE+EALS LD  A
Sbjct: 237 LQPSIPEDLDPWRSKLLWASRVLPMPLVGLFLIGSVCANVGSPASEYPEIEALSRLDVSA 296

Query: 306 AMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMP 365
           AMK+FLAK LTS+ TQ TADVEE SVIIGERNR AIE LRRA+D+G N+IAILYGGGHMP
Sbjct: 297 AMKLFLAKSLTSDLTQNTADVEEKSVIIGERNRVAIENLRRAMDKGQNKIAILYGGGHMP 356

Query: 366 DLGRRLREEFDLLPSRVQWITAWSIRNRDLSSSSFPFLKTMAEVLGWPLNRYQTLALLIF 425
           DLGRRLREEFDL+P  V+W+TAWSIR R L +SS PFLKTMA   GWPLNRYQTLALLIF
Sbjct: 357 DLGRRLREEFDLVPYGVEWVTAWSIRKRKLDTSSLPFLKTMARASGWPLNRYQTLALLIF 416

Query: 426 SSVLALDLWFWELFFGTTVNWISQIASEVHQYV 458
           SS+LA+DLWFWELFFGT V W+S + +E+ +YV
Sbjct: 417 SSILAVDLWFWELFFGTMVTWVSDVTTEILRYV 449

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239771|ref|NP_197455.1| uncharacterized protein [Arabidopsis thaliana] gi|15292823|gb|AAK92780.1| unknown protein [Arabidopsis thaliana] gi|21537101|gb|AAM61442.1| unknown [Arabidopsis thaliana] gi|22136824|gb|AAM91756.1| unknown protein [Arabidopsis thaliana] gi|332005340|gb|AED92723.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 292/404 (72%), Positives = 343/404 (84%), Gaps = 4/404 (0%)

Query: 60  SSSARQQIEDGS-AEQFLENNSIADFMRFKRGSN-GGGSGQLQTAVVTYRKKFPWSLLPP 117
           S S  Q  +D S A  FLE+NSIAD+MRFKR  + G G+ +LQTA+V+Y+K+FPW LL P
Sbjct: 54  SCSLNQPSDDASDAALFLESNSIADYMRFKRRPDPGNGTSELQTAIVSYKKRFPWILLNP 113

Query: 118 FLQVDLVSTIHIADKEYFETLQRELELYDCVLYEMVASRESLEKRRNSVDTKKLKGSRSR 177
           FLQVDLVSTIHIADKEYF TLQ+ELE YD +LYEMVAS+E+LE RRN + +K+LK SRSR
Sbjct: 114 FLQVDLVSTIHIADKEYFTTLQKELEPYDSILYEMVASKETLENRRNPIASKRLKSSRSR 173

Query: 178 GFNILGCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLFTFARDM 237
           GF+ILG IQRQMAR+L LDFQLDCLDY  ENWYHADLD+ETF+LLQ EKGES F+FARDM
Sbjct: 174 GFSILGFIQRQMARVLTLDFQLDCLDYDTENWYHADLDFETFQLLQKEKGESFFSFARDM 233

Query: 238 TLKSTKAMVQPS-IPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELE 296
           T++STKAM+QP+ + +  D WRSKLLW SRV PMPLVGL +IG+ CAD G Q  +YPELE
Sbjct: 234 TIRSTKAMIQPALVTEGRDTWRSKLLWVSRVFPMPLVGLFLIGAFCADFGDQTSDYPELE 293

Query: 297 ALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAIDEGHNRIA 356
           ALS LDFGAAMKVFLAKRLTSE T  T+D+EE SVIIGERNRAA EALRRAI++GH RI 
Sbjct: 294 ALSRLDFGAAMKVFLAKRLTSELTLETSDIEEKSVIIGERNRAATEALRRAIEQGHKRIG 353

Query: 357 ILYGGGHMPDLGRRLREEFDLLPSRVQWITAWSIRN-RDLSSSSFPFLKTMAEVLGWPLN 415
           ILYGGGHMPDLGRRLREEFDL+PS V+W+TAWSIRN  DL +SS+P L+ MAE L WPLN
Sbjct: 354 ILYGGGHMPDLGRRLREEFDLVPSEVRWVTAWSIRNPTDLETSSYPILRKMAEALRWPLN 413

Query: 416 RYQTLALLIFSSVLALDLWFWELFFGTTVNWISQIASEVHQYVE 459
           RYQTLALLIFSSVLALDL FWELFFG+T++W +QI +E++Q+++
Sbjct: 414 RYQTLALLIFSSVLALDLCFWELFFGSTIDWATQIGAELYQFID 457

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
TAIR|locus:2180821	462	AT5G19540 "AT5G19540" [Arabido	0.856	0.854	0.726	3.8e-156

TAIR|locus:2180821 AT5G19540 "AT5G19540" [Arabidopsis thaliana (taxid:3702)]

 Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
 Identities = 290/399 (72%), Positives = 341/399 (85%)

Query:    65 QQIEDGS-AEQFLENNSIADFMRFKRGSN-GGGSGQLQTAVVTYRKKFPWSLLPPFLQVD 122
             Q  +D S A  FLE+NSIAD+MRFKR  + G G+ +LQTA+V+Y+K+FPW LL PFLQVD
Sbjct:    59 QPSDDASDAALFLESNSIADYMRFKRRPDPGNGTSELQTAIVSYKKRFPWILLNPFLQVD 118

Query:   123 LVSTIHIADKEYFETLQRELELYDCVLYEMVASRESLEKRRNSVDTKKLKGSRSRGFNIL 182
             LVSTIHIADKEYF TLQ+ELE YD +LYEMVAS+E+LE RRN + +K+LK SRSRGF+IL
Sbjct:   119 LVSTIHIADKEYFTTLQKELEPYDSILYEMVASKETLENRRNPIASKRLKSSRSRGFSIL 178

Query:   183 GCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLFTFARDMTLKST 242
             G IQRQMAR+L LDFQLDCLDY  ENWYHADLD+ETF+LLQ EKGES F+FARDMT++ST
Sbjct:   179 GFIQRQMARVLTLDFQLDCLDYDTENWYHADLDFETFQLLQKEKGESFFSFARDMTIRST 238

Query:   243 KAMVQPS-IPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSML 301
             KAM+QP+ + +  D WRSKLLW SRV PMPLVGL +IG+ CAD G Q  +YPELEALS L
Sbjct:   239 KAMIQPALVTEGRDTWRSKLLWVSRVFPMPLVGLFLIGAFCADFGDQTSDYPELEALSRL 298

Query:   302 DFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALRRAIDEGHNRIAILYGG 361
             DFGAAMKVFLAKRLTSE T  T+D+EE SVIIGERNRAA EALRRAI++GH RI ILYGG
Sbjct:   299 DFGAAMKVFLAKRLTSELTLETSDIEEKSVIIGERNRAATEALRRAIEQGHKRIGILYGG 358

Query:   362 GHMPDLGRRLREEFDLLPSRVQWITAWSIRN-RDLSSSSFPFLKTMAEVLGWPLNRYQTL 420
             GHMPDLGRRLREEFDL+PS V+W+TAWSIRN  DL +SS+P L+ MAE L WPLNRYQTL
Sbjct:   359 GHMPDLGRRLREEFDLVPSEVRWVTAWSIRNPTDLETSSYPILRKMAEALRWPLNRYQTL 418

Query:   421 ALLIFSSVLALDLWFWELFFGTTVNWISQIASEVHQYVE 459
             ALLIFSSVLALDL FWELFFG+T++W +QI +E++Q+++
Sbjct:   419 ALLIFSSVLALDLCFWELFFGSTIDWATQIGAELYQFID 457


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      461       433   0.00087  118 3  11 22  0.49    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  625 (66 KB)
  Total size of DFA:  273 KB (2143 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  38.85u 0.11s 38.96t   Elapsed:  00:00:02
  Total cpu time:  38.85u 0.11s 38.96t   Elapsed:  00:00:02
  Start:  Mon May 20 22:23:44 2013   End:  Mon May 20 22:23:46 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	461
TIGR00261	380	traB pheromone shutdown-related protein TraB. traB	100.0
COG1916	388	Uncharacterized homolog of PrgY (pheromone shutdow	100.0
PF01963	259	TraB: TraB family; InterPro: IPR002816 In prokaryo	99.6
KOG2860	359	consensus Uncharacterized conserved protein, conta	99.26
COG3735	299	Uncharacterized protein conserved in bacteria [Fun	98.51

>TIGR00261 traB pheromone shutdown-related protein TraB

Probab=100.00  E-value=1.6e-34  Score=295.61  Aligned_cols=200  Identities=20%  Similarity=0.237  Sum_probs=168.6

Q ss_pred             CeEEEEEEeeecccHHHHHHHHHhhc--cCCEEEEEeecCchhhhhccCChhhhhccC----cCCccc----c-cchHHH
Q 012527          118 FLQVDLVSTIHIADKEYFETLQRELE--LYDCVLYEMVASRESLEKRRNSVDTKKLKG----SRSRGF----N-ILGCIQ  186 (461)
Q Consensus       118 ~~~V~LvGTaHVs~~SYyd~Vq~~le--~yDaVL~ELV~sR~~L~~~~~P~~~k~ld~----r~~r~~----s-~L~a~Q  186 (461)
                      +++|+|+||+|||++| .++|++.|+  +||+||||||++|++  ++.+| .|+++|.    |+++.+    + +|+++|
T Consensus         3 ~~~i~lvGTAHvS~~S-~~eV~~~I~~~~PD~VaVELd~~R~~--~l~~~-~~~~~di~~vlk~g~~~~~l~~~~La~~q   78 (380)
T TIGR00261         3 EKTIYILGTAHVSKKS-SEEVANLIEILKPDYIAVELDERRYH--SLLNT-KWRNLDIDKVLKQGNAFFLIINLILANFQ   78 (380)
T ss_pred             CcEEEEEecccCCHHH-HHHHHHHHHHhCCCEEEEeCCHHHHH--HHhhh-hhccCCHHHHhhcCchHHHHHHHHHHHHH
Confidence            6799999999999999 999999998  999999999999999  77666 6777772    667765    3 589999


Q ss_pred             HHHHHHcCccccccccccccccccccCCCHHHHHHHHHh---cCCCcchhhccccccccccccccCCCCCCchHHHHHhh
Q 012527          187 RQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLE---KGESLFTFARDMTLKSTKAMVQPSIPKDLDPWRSKLLW  263 (461)
Q Consensus       187 rrLA~~lGL~pQLD~iDY~~~nw~hADl~geEm~~l~~e---~G~~l~~~dRd~~~~aT~atlkra~~~~l~~wr~kl~l  263 (461)
                      |++++++|++|                  |+||++|+++   .|.|+.++|||+..     |++| +|+.+++|.+ +++
T Consensus        79 ~~l~~~~gi~P------------------G~Em~~Ai~~A~e~g~~v~LiDRdI~i-----Tl~R-~w~~~~~~eK-~kl  133 (380)
T TIGR00261        79 KKLGEEQGIKP------------------GSEMKTAIEKAKKHGIPLILIDRDIET-----TLKR-AWISITFFEK-AKI  133 (380)
T ss_pred             HHHHHHcCCCC------------------CHHHHHHHHHHHHcCCcEEEeCCCHhH-----HHHH-HHHhCCHHHH-HHH
Confidence            99999999998                  9999999844   49999999999955     5999 5999999955 766


Q ss_pred             hhhccCchhhHHHhhhhhhccCCCCCCChhHHHHhhhccHHHHHHHHHHhhhhhhhhhcccccccCccchhhhhHHHHHH
Q 012527          264 ASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEA  343 (461)
Q Consensus       264 ls~v~P~Pl~glLLl~gv~a~~g~~~~s~~EiEaLk~~D~l~A~kl~~Ak~l~sE~a~~~~dl~~~~VLI~ERNr~aae~  343 (461)
                      ++              +++.+..  ..+++|+|+|++.|.++.+        +.|+.+..|.+  +++||+|||+||+.+
T Consensus       134 ~~--------------~l~~~~~--~~~e~~ie~l~~~d~L~~~--------~~e~~~~~P~l--~~~LIdERD~ymA~~  187 (380)
T TIGR00261       134 IS--------------SLFSSTD--AKIEDEIEKLLEQDALSKI--------MKELSKISPKV--KKVLIDERDEFMANK  187 (380)
T ss_pred             HH--------------HHHhccc--cCCHHHHHHhhhhhHHHHH--------HHHHhhhCCch--hhHHHHHHHHHHHHH
Confidence            33              1221222  1267889999999999998        88888888888  999999999999999


Q ss_pred             HHHHHHhCCCEEEEEecCCChHHHHHHHHH
Q 012527          344 LRRAIDEGHNRIAILYGGGHMPDLGRRLRE  373 (461)
Q Consensus       344 Lr~a~~~g~k~IaVvYGAGHlPGl~r~L~e  373 (461)
                      |++...++ ++|.+|+||||+||+.+.|.+
T Consensus       188 L~~l~~~~-~~VvaVVGAGHl~GI~~~l~~  216 (380)
T TIGR00261       188 LLEGEGNK-NIIVAVVGAGHVSGIMRTLKK  216 (380)
T ss_pred             HHHhhcCC-CcEEEEECcchhhhHHHHHhC
Confidence            99877543 466679999999999999984

traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.

>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]

Probab=100.00  E-value=4.9e-34  Score=288.60  Aligned_cols=205  Identities=23%  Similarity=0.319  Sum_probs=173.2

Q ss_pred             EEEEEEeeecccHHHHHHHHHhhc--cCCEEEEEeecCchhhhhccCChhhhhcc--C--cCCccc----c-cchHHHHH
Q 012527          120 QVDLVSTIHIADKEYFETLQRELE--LYDCVLYEMVASRESLEKRRNSVDTKKLK--G--SRSRGF----N-ILGCIQRQ  188 (461)
Q Consensus       120 ~V~LvGTaHVs~~SYyd~Vq~~le--~yDaVL~ELV~sR~~L~~~~~P~~~k~ld--~--r~~r~~----s-~L~a~Qrr  188 (461)
                      +|+++||||||++| .++|++.|+  +||+|+||||+.|++  ++.++..+ ++|  +  |+|+.|    + +|+.+||+
T Consensus        13 ~v~iiGTAHVS~~S-veeVrr~I~~~~PDaVAVELd~~R~~--sLl~~~~~-~ldl~~vlk~Gk~~~~l~~~lLa~~Qrk   88 (388)
T COG1916          13 EVYILGTAHVSKDS-VEEVRRIILEEKPDAVAVELDEARLL--SLLGGSRE-ELDLAQVLKEGKAFFLLAGLLLAYFQRK   88 (388)
T ss_pred             eEEEEeeeecCHhH-HHHHHHHHHhcCCCeEEEEecHHHHH--HHhcCCcc-cCCHHHHHHcCchHHHHHHHHHHHHHHH
Confidence            99999999999999 999999998  999999999999999  77666655 666  2  788887    2 68999999


Q ss_pred             HHHHcCccccccccccccccccccCCCHHHHHHHH---HhcCCCcchhhccccccccccccccCCCCCCchHHHHHhhhh
Q 012527          189 MARILMLDFQLDCLDYQAENWYHADLDYETFKLLQ---LEKGESLFTFARDMTLKSTKAMVQPSIPKDLDPWRSKLLWAS  265 (461)
Q Consensus       189 LA~~lGL~pQLD~iDY~~~nw~hADl~geEm~~l~---~e~G~~l~~~dRd~~~~aT~atlkra~~~~l~~wr~kl~lls  265 (461)
                      +++++|++|                  |+||++|+   +|.|.|+.++||||+.  |   +|| .|..+++|.+ ++.++
T Consensus        89 lg~~~Gv~P------------------GsEmk~AIe~A~e~ga~V~lIDRdI~v--T---l~R-~~~~~~~~EK-lK~~~  143 (388)
T COG1916          89 LGKELGVKP------------------GSEMKAAIEAARELGAPVALIDRDIGV--T---LRR-AWAKMPFWEK-LKLIS  143 (388)
T ss_pred             HHHhcCCCC------------------hHHHHHHHHHHHHcCCCEEEecccHHH--H---HHH-HHHhCCHHHH-HHHHH
Confidence            999999998                  99999998   5559999999999965  4   999 5999999955 76643


Q ss_pred             hccCchhhHHHhhhhhhccCCCCCCChhHHHHhhhccHHHHHHHHHHhhhhhhhhhcccccccCccchhhhhHHHHHHHH
Q 012527          266 RVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERNRAAIEALR  345 (461)
Q Consensus       266 ~v~P~Pl~glLLl~gv~a~~g~~~~s~~EiEaLk~~D~l~A~kl~~Ak~l~sE~a~~~~dl~~~~VLI~ERNr~aae~Lr  345 (461)
                               .|+.+ +.    .+..++.|++.|++.|.++++        +.||.+..|.+  ++|||+|||+||+.+|.
T Consensus       144 ---------~L~~~-~~----~~g~~e~ei~~l~~~D~~~al--------~~efr~~~P~~--~~vLIDERd~ymA~nll  199 (388)
T COG1916         144 ---------SLISG-LL----FPGQSEIEIDELKQEDVLSAL--------MQEFRRFSPTV--YKVLIDERDRYMARNLL  199 (388)
T ss_pred             ---------HHHHh-cc----cCCCchHHHHHHhhhhHHHHH--------HHHHHHhChhH--HHHHHHHHHHHHHHHHH
Confidence                     23232 22    222267899999999999999        99999999999  99999999999999999


Q ss_pred             HHHHhCCCEEEEEecCCChHHHHHHHHHhcCCcc
Q 012527          346 RAIDEGHNRIAILYGGGHMPDLGRRLREEFDLLP  379 (461)
Q Consensus       346 ~a~~~g~k~IaVvYGAGHlPGl~r~L~ee~g~vp  379 (461)
                      +..+.+.+ |.+|+||||.+||.++|.+. ...|
T Consensus       200 ~~~~~~~~-vvAVVGAGH~~GI~~~L~~~-~~~p  231 (388)
T COG1916         200 EIVSILND-VVAVVGAGHVRGIERYLKNS-DSAP  231 (388)
T ss_pred             HHHcccCc-EEEEEccccHHHHHHHHhcc-ccCC
Confidence            99877656 44699999999999999973 4443

>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []

Probab=99.60  E-value=2.8e-15  Score=141.63  Aligned_cols=213  Identities=19%  Similarity=0.274  Sum_probs=124.1

Q ss_pred             CCCCCCCeEEEEEEeeecccHHHHH---HHHHhhccCCEEEEEe----------------ecCchhhhhccCChhhhhcc
Q 012527          112 WSLLPPFLQVDLVSTIHIADKEYFE---TLQRELELYDCVLYEM----------------VASRESLEKRRNSVDTKKLK  172 (461)
Q Consensus       112 ~~~~~p~~~V~LvGTaHVs~~SYyd---~Vq~~le~yDaVL~EL----------------V~sR~~L~~~~~P~~~k~ld  172 (461)
                      |.+-+++.++.|+||+|+++++.|.   .+.+.+.++|+|++|+                .++...+.....|+.+++++
T Consensus         3 W~i~~~g~~~yL~GT~H~~~~~~~~~~~~i~~a~~~sd~v~~E~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~l~   82 (259)
T PF01963_consen    3 WKISKNGKTVYLLGTIHVSPKSFYPLPDAIEEALKKSDVVVVELDMSDPEAQAQMQQAMMLPDGKTLKDLLSPEEYARLE   82 (259)
T ss_pred             EEEEcCCeEEEEEeccCCCchhhhhhHHHHHHHHhcCCEEEEecccccHHHHHHHHhhccCCCcccHHHhcCHHHHHHHH
Confidence            4455668999999999999999433   3455556999999999                11122233556677776666


Q ss_pred             C---cCCcc------ccc--------chHHHHHHHHHcCccccccccccccccccccCCCHHHHHHHHHhcCCCcc-hhh
Q 012527          173 G---SRSRG------FNI--------LGCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEKGESLF-TFA  234 (461)
Q Consensus       173 ~---r~~r~------~s~--------L~a~QrrLA~~lGL~pQLD~iDY~~~nw~hADl~geEm~~l~~e~G~~l~-~~d  234 (461)
                      .   ..+..      +.+        ...+|+.+...+|+++                  +.++++...  |.++. +-+
T Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~~gvd~------------------~l~~~A~~~--~~~v~~Le~  142 (259)
T PF01963_consen   83 ELLAEYGLPLEMLRKLKPWAAAFLLSLSAFQKGYSPEYGVDP------------------YLEQRAAEE--GKPVVGLET  142 (259)
T ss_pred             HHHHhcCCCHHHHHcCCHHHHHHHHHHHHHhccccccccccH------------------HHHHHHHHh--CCCcccccC
Confidence            3   11110      110        1233445555556664                  555555432  22222 223


Q ss_pred             ccccccccccccccCCCCCCchHHHHHhhhhhccCchhhHHHhhhhhhccCCCCCC-ChhHHHHhhhccHHHHHHHHHHh
Q 012527          235 RDMTLKSTKAMVQPSIPKDLDPWRSKLLWASRVLPMPLVGLLIIGSVCADVGSQPP-EYPELEALSMLDFGAAMKVFLAK  313 (461)
Q Consensus       235 Rd~~~~aT~atlkra~~~~l~~wr~kl~lls~v~P~Pl~glLLl~gv~a~~g~~~~-s~~EiEaLk~~D~l~A~kl~~Ak  313 (461)
                      ++...  +   +.+    +++.+.. ...             |...+. ....... ....+++.+.+|+ +++      
T Consensus       143 ~~~q~--~---~~~----~~~~~~q-~~~-------------L~~~l~-~~~~~~~~~~~~~~~~~~gd~-~~l------  191 (259)
T PF01963_consen  143 REEQI--T---LLR----SLPLDEQ-VKM-------------LRETLD-DIEDGEKMLEQLIEAWKNGDL-DAL------  191 (259)
T ss_pred             HHHHH--H---HHh----cCCHHHH-HHH-------------HHHHHh-ccccchHHHHHHHHHHHccCH-HHH------
Confidence            33311  1   111    2244433 211             122111 2122222 4446688899999 555      


Q ss_pred             hhhhhhhh--cccccccCccchhhhhHHHHHHHHHHHHhCCCEEEEEecCCChH---HHHHHHHHhcCCcccc
Q 012527          314 RLTSEFTQ--VTADVEESSVIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMP---DLGRRLREEFDLLPSR  381 (461)
Q Consensus       314 ~l~sE~a~--~~~dl~~~~VLI~ERNr~aae~Lr~a~~~g~k~IaVvYGAGHlP---Gl~r~L~ee~g~vp~~  381 (461)
                        ...+.+  ..|..  +++||++||++++++|.+.++++ +++.|++|||||+   |+.+.|++ .||....
T Consensus       192 --~~~~~~~~~~p~~--~~~ll~~RN~~~~~~i~~~l~~~-~~~fvvVGa~HL~G~~gvl~lLr~-~Gy~V~~  258 (259)
T PF01963_consen  192 --MELMKEDESFPEL--YEVLLDERNRRWAEKIEELLKEG-GTVFVVVGAGHLPGEDGVLDLLRK-KGYTVEP  258 (259)
T ss_pred             --HHHHHhcccCHHH--HHHHHHHHhHHHHHHHHHHHhcC-CCEEEEEcchhccchhhHHHHHHh-CCceeec
Confidence              222222  44555  78899999999999999999876 4455799999999   77888884 4998654

Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.

>KOG2860 consensus Uncharacterized conserved protein, contains TraB domain [Signal transduction mechanisms]

Probab=99.26  E-value=2.2e-12  Score=130.26  Aligned_cols=201  Identities=18%  Similarity=0.206  Sum_probs=143.7

Q ss_pred             eEEEEEEeeecccHHHHHHHHHhhc--cCCEEEEEeecCchhhhhccCChhhhhccCc---------------CCccccc
Q 012527          119 LQVDLVSTIHIADKEYFETLQRELE--LYDCVLYEMVASRESLEKRRNSVDTKKLKGS---------------RSRGFNI  181 (461)
Q Consensus       119 ~~V~LvGTaHVs~~SYyd~Vq~~le--~yDaVL~ELV~sR~~L~~~~~P~~~k~ld~r---------------~~r~~s~  181 (461)
                      .+|+|+||+|++.+| -+.|.+.++  ++|.|.+|||++|.+.....+|...++...=               .|+.|..
T Consensus        82 s~i~lVgTah~S~Es-~~~v~~virtv~pd~V~vElCrsr~sIis~~ep~l~se~evl~g~~f~~~~~~~~~~gG~~~L~  160 (359)
T KOG2860|consen   82 STIYLVGTAHFSKES-QEDVSNVIRAVQPDFVMVELCRSRISIISADEPQLLSEAEVLNGAKFRGIFEEAGKIGGIVFLL  160 (359)
T ss_pred             ceeEEEEeeecCccc-cccHHHHhhccCcceeehhhccchhhcccccChhhhccCcccCCcceeeeeccccccCceEehh
Confidence            599999999999999 999999999  9999999999999886666666554443310               1122223


Q ss_pred             chHHHHHHHHHcCccccccccccccccccccCCCHHHHHHHHHhc----CCCcchhhccccccccccccccCCCCCCchH
Q 012527          182 LGCIQRQMARILMLDFQLDCLDYQAENWYHADLDYETFKLLQLEK----GESLFTFARDMTLKSTKAMVQPSIPKDLDPW  257 (461)
Q Consensus       182 L~a~QrrLA~~lGL~pQLD~iDY~~~nw~hADl~geEm~~l~~e~----G~~l~~~dRd~~~~aT~atlkra~~~~l~~w  257 (461)
                      +...|-+....++-.+                  +.||+++-++.    |--+++-||.|..     |++|+ +..+.+|
T Consensus       161 lrsv~a~~~~dLdmaa------------------~gefr~a~~efs~~~g~~v~lgDrpiei-----tLqRa-~~eLs~~  216 (359)
T KOG2860|consen  161 LRSVSAKDLGDLDMAA------------------GGEFRRASREFSTLMGCLVVLGDRPIEI-----TLQRA-LSELSSW  216 (359)
T ss_pred             hhhhhhhhcccccccc------------------chhHHHHhhhhccCCCceEEecCCccee-----eHHHH-HHhcchh
Confidence            4555555555555554                  67888877655    5567778999944     59995 8888888


Q ss_pred             HHHHhhhhhccCchhhHHHhhhhhhccCCCCCCChhHHHHhhhccHHHHHHHHHHhhhhhhhhhcccccccCccchhhhh
Q 012527          258 RSKLLWASRVLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAKRLTSEFTQVTADVEESSVIIGERN  337 (461)
Q Consensus       258 r~kl~lls~v~P~Pl~glLLl~gv~a~~g~~~~s~~EiEaLk~~D~l~A~kl~~Ak~l~sE~a~~~~dl~~~~VLI~ERN  337 (461)
                      +. +.+              ..-++ ..-.......|.|.+++.|+.+.+        +.+++..-|..  --|++.|||
T Consensus       217 ~a-~~l--------------v~~vt-~s~~~s~~t~eve~c~q~~Lveql--------~~~~a~~vp~~--~lvlv~eRd  270 (359)
T KOG2860|consen  217 QA-VVL--------------VGHVT-FSKKNSIQTEEVENCKQTDLVEQL--------TIEMANFVPAL--SLVLVQERD  270 (359)
T ss_pred             he-eeE--------------EEEEE-EeeccccchhhhhhhhHHhHHHHH--------HHHHHhhHHHH--HHHHHHHHH
Confidence            65 222              11122 111122378889999999999988        77777777766  678999999


Q ss_pred             HHHHHHHHHHHHh---C-----CCEEEEEecCCChHHHHHH
Q 012527          338 RAAIEALRRAIDE---G-----HNRIAILYGGGHMPDLGRR  370 (461)
Q Consensus       338 r~aae~Lr~a~~~---g-----~k~IaVvYGAGHlPGl~r~  370 (461)
                      -|+.-.|......   |     .-.+.+|||-||.+||.+.
T Consensus       271 ~yl~~slelif~v~~~~gq~~~~~mvvvVvgi~~~sG~~~~  311 (359)
T KOG2860|consen  271 LYLCHSLELIFTVWLRGGQQILPYMVVVVVGIGHVSGIYLA  311 (359)
T ss_pred             hhhccchhheeeecccCCccccceEEEEEEEEEecchhhhh
Confidence            9998888765543   2     1346689999999999764

>COG3735 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.51  E-value=6e-07  Score=90.65  Aligned_cols=55  Identities=31%  Similarity=0.343  Sum_probs=39.5

Q ss_pred             ccccccCccchhhhhHHHHHHHHHHHHhCCCEEEEEecCCChHH---HHHHHHHhcCCccccc
Q 012527          323 TADVEESSVIIGERNRAAIEALRRAIDEGHNRIAILYGGGHMPD---LGRRLREEFDLLPSRV  382 (461)
Q Consensus       323 ~~dl~~~~VLI~ERNr~aae~Lr~a~~~g~k~IaVvYGAGHlPG---l~r~L~ee~g~vp~~~  382 (461)
                      .++.  +.+||-+||+.++++  +...-.+.+.-|++||||+||   +.+-|+ +.||....+
T Consensus       241 ~~~~--~~~li~~RN~~wad~--~~~~l~~G~~fvaVGAlHL~G~e~L~e~Lr-k~g~t~trv  298 (299)
T COG3735         241 YADL--YDVLITQRNRAWADK--KTPLLQGGRYFVAVGALHLPGPEGLVELLR-KDGFTVTRV  298 (299)
T ss_pred             hHHH--HHHHHHHHHHHHHHh--hccccCCCCEEEEeccccccCcccHHHHHH-HcCCeeeec
Confidence            4556  889999999999998  222222344447999999997   667777 458876544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	461
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 64/462 (13%), Positives = 145/462 (31%), Gaps = 158/462 (34%)

Query: 96  SGQLQTAVVTYRKKFPWSLLPPFLQ-------VDLVSTIHIADKEYFETL------QREL 142
           +G+ Q     Y+          F+         D+  +I ++ +E    +         L
Sbjct: 11  TGEHQ---YQYKDILS-VFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTL 65

Query: 143 ELYDCVL------------------YEMVASRESLEKRRNSVDTKKLKGSRSRGFNILGC 184
            L+  +L                  Y+ + S    E+R+ S+ T+     R R +N    
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 185 I-QRQMARILMLD------FQLD----------------------CLDYQAENWYHADLD 215
             +  ++R+           +L                       CL Y+ +      +D
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC----KMD 181

Query: 216 YETF--KLLQLEKGESLFTFARDMTLKSTKAMVQ-----PSIPKDLDPWRSKL--LWASR 266
           ++ F   L      E++    + +  +             +I   +   +++L  L  S+
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 267 VLPMPLVGLLIIGSVCADVGSQPPEYPELEALSMLDFGAAMKVFLAKRLTSEFTQVTADV 326
                   LL++ +V              +A +  +     K+     LT+ F QVT  +
Sbjct: 242 PYEN---CLLVLLNVQ-----------NAKAWNAFNLSC--KIL----LTTRFKQVTDFL 281

Query: 327 ---EESSVIIGERNRA----------------AIEALRRAIDEGHNR-IAILYGGGHMPD 366
                + + +   +                    + L R +   + R ++I         
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI--------- 332

Query: 367 LGRRLREEFDLLPSRVQWITAWSIRNRD----LSSSSFPFLKTMAEVLGWPLNRYQTLAL 422
           +   +R+      +   W   W   N D    +  SS   L+  AE        +  L+ 
Sbjct: 333 IAESIRDG----LAT--WDN-WKHVNCDKLTTIIESSLNVLEP-AEY----RKMFDRLS- 379

Query: 423 LIF-------SSVLALDLWFWELFFGTTVNWISQIASEVHQY 457
            +F       + +L+L +W +++      + +  + +++H+Y
Sbjct: 380 -VFPPSAHIPTILLSL-IW-FDV----IKSDVMVVVNKLHKY 414

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00