Citrus Sinensis ID: 012529
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 461 | 2.2.26 [Sep-21-2011] | |||||||
| O48593 | 567 | Asparagine--tRNA ligase, | yes | no | 1.0 | 0.813 | 0.784 | 0.0 | |
| Q6MEC9 | 467 | Asparagine--tRNA ligase O | yes | no | 0.969 | 0.957 | 0.572 | 1e-154 | |
| A3DBI2 | 464 | Asparagine--tRNA ligase O | yes | no | 0.947 | 0.941 | 0.534 | 1e-145 | |
| B0JN99 | 454 | Asparagine--tRNA ligase O | yes | no | 0.924 | 0.938 | 0.578 | 1e-145 | |
| Q74E08 | 461 | Asparagine--tRNA ligase O | yes | no | 0.963 | 0.963 | 0.537 | 1e-144 | |
| P52276 | 462 | Asparagine--tRNA ligase O | N/A | no | 0.928 | 0.926 | 0.565 | 1e-144 | |
| Q8DG51 | 462 | Asparagine--tRNA ligase O | yes | no | 0.917 | 0.915 | 0.564 | 1e-143 | |
| A0PY64 | 463 | Asparagine--tRNA ligase O | yes | no | 0.911 | 0.907 | 0.527 | 1e-142 | |
| B2UXS0 | 464 | Asparagine--tRNA ligase O | yes | no | 0.904 | 0.898 | 0.521 | 1e-142 | |
| B2TI01 | 464 | Asparagine--tRNA ligase O | yes | no | 0.904 | 0.898 | 0.521 | 1e-142 |
| >sp|O48593|SYNO_ARATH Asparagine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYNO PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/487 (78%), Positives = 423/487 (86%), Gaps = 26/487 (5%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 81 FGSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 140
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYP
Sbjct: 141 LQCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYP 200
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 201 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 260
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ--------------------- 219
EGAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQ
Sbjct: 261 EGAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 320
Query: 220 -----VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 274
VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDN
Sbjct: 321 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDN 380
Query: 275 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 334
CKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG DLQSE
Sbjct: 381 CKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDLQSE 440
Query: 335 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 394
HERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQREER
Sbjct: 441 HERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREER 500
Query: 395 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 454
LE LE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD IPFPR
Sbjct: 501 LEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPR 560
Query: 455 TPGSVEF 461
TP S EF
Sbjct: 561 TPASAEF 567
|
Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2 |
| >sp|Q6MEC9|SYN_PARUW Asparagine--tRNA ligase OS=Protochlamydia amoebophila (strain UWE25) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 545 bits (1403), Expect = e-154, Method: Compositional matrix adjust.
Identities = 269/470 (57%), Positives = 336/470 (71%), Gaps = 23/470 (4%)
Query: 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE 70
+ KI ++G E +G I + GWVRT+R Q + TFIE+NDGS LSN Q + T D
Sbjct: 2 RTKIKSLRGTTPEVRALIGHDITLKGWVRTVRNQKTFTFIEINDGSTLSNFQIIATPDIA 61
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS-YPIQKKRVSRE 129
GYDQ+ + L +TG S+ G +V S G +Q +E++ I ++GK DP Y +QKKR + E
Sbjct: 62 GYDQLINQL-STGVSVSAIGTIVESPGKEQNLEMQATAITIIGKCDPEVYLLQKKRHTFE 120
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR+ AHLRPRTNT GAV RVRNALA+ATH+FFQ+ GF++I +PIIT SDCEGAG+ F V
Sbjct: 121 FLRSIAHLRPRTNTIGAVTRVRNALAFATHQFFQKRGFLYIHTPIITGSDCEGAGKMFQV 180
Query: 190 TTLIPSSREAAESPVDAIPKTKD-----------GLID-------WSQVYTFGPTFRAEN 231
TTL A +P + T+D G ++ S VYTFGPTFRAEN
Sbjct: 181 TTL--DQNNPARTPEGRVDYTQDFFGKPTYLTVSGQLNGEIYACALSDVYTFGPTFRAEN 238
Query: 232 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGII 291
SNTSRHLAEFWMIEPE+AFADL D+M CA YL+Y+++Y+LDNC+EDM+FFN + +I
Sbjct: 239 SNTSRHLAEFWMIEPEMAFADLNDNMDCAEDYLKYILKYVLDNCQEDMEFFNKHVATDLI 298
Query: 292 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIV 351
RL V F + SYT A+ +L KA KKFE+ VKWG DLQSEHER+L EE FG PVI+
Sbjct: 299 SRLEHVINTSFERASYTYAVRILEKADKKFEYPVKWGLDLQSEHERFLAEEFFGK-PVIL 357
Query: 352 SDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS 411
+DYPK+IKAFYMR N+D +TVAAMD+LVP++GE+IGGSQREERL LE +L E L +
Sbjct: 358 TDYPKDIKAFYMRTNEDNKTVAAMDVLVPKVGEIIGGSQREERLSVLESKLKEFNLPAEE 417
Query: 412 YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461
YWWYL+LR +GSVPH+GFG GFERLVQF TG+ENIRD IPFPR PG +F
Sbjct: 418 YWWYLELRKFGSVPHSGFGAGFERLVQFTTGMENIRDVIPFPRHPGKADF 467
|
Protochlamydia amoebophila (strain UWE25) (taxid: 264201) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|A3DBI2|SYN_CLOTH Asparagine--tRNA ligase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 516 bits (1330), Expect = e-145, Method: Compositional matrix adjust.
Identities = 255/477 (53%), Positives = 325/477 (68%), Gaps = 40/477 (8%)
Query: 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMT-SDAE 70
+K VK D VG IVVAGWVRT+R + FIE+NDGS N+Q V +
Sbjct: 1 MKTTLVKSLYRNTKDYVGKEIVVAGWVRTVRDSKAFGFIELNDGSFFKNLQIVFEEKNLP 60
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREF 130
+ ++ ++ G++I G +V + G+KQ ELK KI + G S P YP+QKKR S E+
Sbjct: 61 NFKEIAK--LSVGSAIIAHGELVETPGAKQPFELKATKIEIEGASTPDYPLQKKRHSFEY 118
Query: 131 LRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVT 190
LRT AHLRPRTNTF AV RVR+ LAYA HKFFQE GF+++ +PIIT SD EGAG+ F VT
Sbjct: 119 LRTIAHLRPRTNTFSAVFRVRSLLAYAIHKFFQERGFVYVHTPIITGSDAEGAGQMFKVT 178
Query: 191 TLIPSSREAAESPVDAIPKTKDGLIDWSQ--------------------------VYTFG 224
TL ++ P+ +DG +D+S+ +YTFG
Sbjct: 179 TL----------DINNPPRKEDGTVDFSKDFFDRETNLTVSGQLEGETYSMAFRNIYTFG 228
Query: 225 PTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNT 284
PTFRAENSNT+RH AEFWM+EPE+AFADL+DDM A L+Y++ Y L+N E+M+FFN
Sbjct: 229 PTFRAENSNTARHAAEFWMVEPEIAFADLEDDMELAEDMLKYIINYCLENAPEEMEFFNN 288
Query: 285 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF 344
+I+ ++DRL+ + DF ++YT+AI++L KA +KFE+ VKWG DLQ+EHERYLTE+ F
Sbjct: 289 FIDNTLLDRLNNIVSSDFAHVTYTEAIDILSKADQKFEYPVKWGNDLQTEHERYLTEKVF 348
Query: 345 GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE 404
PV V+DYPK+IKAFYMR NDD +TVAAMD+LVP +GE+IGGSQREERL+YLE R+ E
Sbjct: 349 KK-PVFVTDYPKDIKAFYMRLNDDNKTVAAMDLLVPGVGEIIGGSQREERLDYLENRMKE 407
Query: 405 LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461
L L + YWWYLDLR YGS HAGFGLGFER + + TG+ NIRD IPFPRT S EF
Sbjct: 408 LGLKMEDYWWYLDLRRYGSTRHAGFGLGFERAIMYITGMSNIRDVIPFPRTVHSAEF 464
|
Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|B0JN99|SYN_MICAN Asparagine--tRNA ligase OS=Microcystis aeruginosa (strain NIES-843) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 515 bits (1327), Expect = e-145, Method: Compositional matrix adjust.
Identities = 255/441 (57%), Positives = 314/441 (71%), Gaps = 15/441 (3%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWVRT R TF+EVNDGS L+N+Q ++ Y+ V I+TGA+I + GN
Sbjct: 18 VTVQGWVRTKRELKEFTFLEVNDGSSLANLQVILEPTLPDYENVLKT-ISTGAAIAVSGN 76
Query: 92 VVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVR 151
+VPS G Q +ELK +I L G P YP+QKKR S EFLRT AHLR RTNT GAV RVR
Sbjct: 77 LVPSPGKGQNIELKAAEITLYGDCPPDYPLQKKRHSFEFLRTIAHLRARTNTLGAVMRVR 136
Query: 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPK-- 209
NA A A H FFQE GFIW+ +PIITA+DCEGAGE F VT+L ++ A D K
Sbjct: 137 NACATAIHSFFQEKGFIWVHTPIITANDCEGAGELFTVTSL--DLKKPANFAEDFFGKRA 194
Query: 210 --TKDGLID-------WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACA 260
T G + S VYTFGPTFRAENSNTSRHLAEFWM+EPE+AF DL+ D A
Sbjct: 195 YLTVSGQLQAEVMAMALSNVYTFGPTFRAENSNTSRHLAEFWMVEPEMAFCDLEGDQDLA 254
Query: 261 TAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKK 320
A+L+Y+ +++L+NC ED+ FFN I+K ++ + +F +++Y++AIELL KA ++
Sbjct: 255 EAFLKYIFKFVLENCPEDLQFFNERIDKTVLSTAENIVNSEFGRITYSEAIELLEKADRQ 314
Query: 321 FEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP 380
FEF V+WG DLQSEHERYL EE F PVIV++YPK IKAFYMR +D+ +TV+AMD+L P
Sbjct: 315 FEFPVEWGVDLQSEHERYLAEELFKK-PVIVTNYPKTIKAFYMRLDDNNKTVSAMDILAP 373
Query: 381 RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFA 440
+IGE+IGGSQREERL+ L R+ E +N D WWYLDLR YGSVPHAGFGLGFERLVQF
Sbjct: 374 KIGEIIGGSQREERLDVLIQRMQEQGMNPDDLWWYLDLRRYGSVPHAGFGLGFERLVQFM 433
Query: 441 TGVENIRDAIPFPRTPGSVEF 461
TG+ NIRD IPFPRTP S +F
Sbjct: 434 TGMTNIRDVIPFPRTPLSADF 454
|
Microcystis aeruginosa (strain NIES-843) (taxid: 449447) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q74E08|SYN_GEOSL Asparagine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 511 bits (1316), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/467 (53%), Positives = 326/467 (69%), Gaps = 23/467 (4%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA 69
++++I ++ G G + ++V GWVRT R V F+ VNDGSCL+++Q V
Sbjct: 3 ERIRIREILAGTPAGTE-----VIVKGWVRTSRVGKGVAFLAVNDGSCLASLQVVAEPGL 57
Query: 70 EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE 129
Y +++ I TGA++ ++G V S + Q VEL K+V+VG +D YP+QKKR + E
Sbjct: 58 ANYHELRG--IGTGAAVAVRGIVAESPAAGQAVELHATKVVVVGGADEQYPLQKKRHTFE 115
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
+LRT AHLRPR+NTFGAV RVR++LA A H+FF E GF+++ +PIIT SDCEGAGE F V
Sbjct: 116 YLRTIAHLRPRSNTFGAVFRVRSSLAQAVHRFFAERGFLYVHTPIITTSDCEGAGELFRV 175
Query: 190 TTLIPSSREAAESPVD--------AIPKTKDGLID-------WSQVYTFGPTFRAENSNT 234
TTL PS+ A+ VD T G ++ +S +YTFGPTFRAENSNT
Sbjct: 176 TTLDPSAPPMADGAVDFSQDFFAAQAGLTVSGQLEGELFAQAFSDIYTFGPTFRAENSNT 235
Query: 235 SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRL 294
RH AEFWMIEPE+AFADL+DD A A + +Y+ R++LDNC EDM FFN +++G++ R+
Sbjct: 236 PRHAAEFWMIEPEMAFADLRDDAALAEDFFRYLCRHVLDNCAEDMAFFNEHVDRGLLARV 295
Query: 295 STVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDY 354
VA F + Y AIE L +A FE+ V+WG DLQ+EHERYLTE+ GG PV V +Y
Sbjct: 296 EQVAGSSFAMMEYGVAIEHLKRAAVPFEYPVEWGLDLQTEHERYLTEQVVGG-PVFVVNY 354
Query: 355 PKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWW 414
P+EIKAFYMR+NDDGRTVAAMD+LVP++GE+IGGSQREER + LE R+ E + +S WW
Sbjct: 355 PQEIKAFYMRRNDDGRTVAAMDLLVPKVGEIIGGSQREERYDLLESRMREGGIAPESLWW 414
Query: 415 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461
YLD R +GS PHAGFGLGFERL+ + TG+ENIRD IPFPRTP EF
Sbjct: 415 YLDSRRWGSTPHAGFGLGFERLIMYLTGMENIRDVIPFPRTPRHAEF 461
|
Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P52276|SYN_SYNY3 Asparagine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=asnS PE=3 SV=2 | Back alignment and function description |
|---|
Score = 510 bits (1314), Expect = e-144, Method: Compositional matrix adjust.
Identities = 252/446 (56%), Positives = 319/446 (71%), Gaps = 18/446 (4%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
++V GW+RT R +F+EVNDGS L+N+Q V+ YD++ S L TGA++ ++G
Sbjct: 19 VMVQGWLRTKRTLKDFSFVEVNDGSSLANLQVVLDGSLADYDRLLSQL-QTGAALVVEGK 77
Query: 92 VVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV 150
+ PS G Q+VELK K+ L+G +DP SYP+QKKR S EFLRT HLRPRTNT GAV RV
Sbjct: 78 LAPSPGKGQRVELKATKLELLGGADPGSYPLQKKRHSFEFLRTIGHLRPRTNTIGAVMRV 137
Query: 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL----IPSSREAAESPVDA 206
RNA A A H+FFQE GF+W+ +PIITASDCEGAG+ F VTTL +P + E + D
Sbjct: 138 RNACATAIHQFFQERGFLWVHTPIITASDCEGAGDLFKVTTLDLQRVPKNGEGIDYSQDF 197
Query: 207 IPK----TKDGLID-------WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKD 255
K T G ++ + VYTFGPTFRAENSNTSRHLAEFWM+EPE+AF DL+
Sbjct: 198 FGKQAYLTVSGQLEAEVMALAFQNVYTFGPTFRAENSNTSRHLAEFWMVEPEMAFCDLEG 257
Query: 256 DMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLI 315
D A +L+Y+ +++L+ C EDM+FF+ I+ ++ + +F L+Y++AI+LL
Sbjct: 258 DRQWAEEFLKYIFKFVLEKCPEDMEFFDQRIDNTVLATADNIINNEFAWLTYSEAIKLLE 317
Query: 316 KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAM 375
KA +KFE+ V WG DLQSEHERYL E F P IV+DYPK+IKAFYMR NDDG+TVAAM
Sbjct: 318 KADQKFEYPVAWGVDLQSEHERYLAETVFKR-PTIVTDYPKDIKAFYMRLNDDGKTVAAM 376
Query: 376 DMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFER 435
D+L P+IGE+IGGSQREERL+ L R+ E + + WWYLDLR YGSVPHAGFGLGFER
Sbjct: 377 DILAPKIGEIIGGSQREERLDILTQRMQEQGVPEEDLWWYLDLRRYGSVPHAGFGLGFER 436
Query: 436 LVQFATGVENIRDAIPFPRTPGSVEF 461
+VQF TG+ NIRD IPFPRTP + EF
Sbjct: 437 IVQFMTGMANIRDVIPFPRTPMNAEF 462
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q8DG51|SYN_THEEB Asparagine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 509 bits (1311), Expect = e-143, Method: Compositional matrix adjust.
Identities = 261/462 (56%), Positives = 312/462 (67%), Gaps = 39/462 (8%)
Query: 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASI 86
+VG I V GWVRT R TF+ +NDGS L+ +Q V+ + L TTGA+
Sbjct: 13 QVGDRITVKGWVRTKRELKECTFVNLNDGSTLAGLQVVIPNTVAAATPTMKDL-TTGAAA 71
Query: 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFG 145
G +V S G Q +EL +I L G +DP +YP+QKKR S EFLRT AHLRPRTNT G
Sbjct: 72 EFTGELVRSPGKNQAIELHAEEIHLWGTADPETYPLQKKRHSFEFLRTIAHLRPRTNTLG 131
Query: 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205
AV RVRNA A A H+FFQE GF+W+ +PIITASDCEGAGE F VTTL +
Sbjct: 132 AVMRVRNACATAIHQFFQERGFLWVHTPIITASDCEGAGELFTVTTL----------DLT 181
Query: 206 AIPKTKDGLIDWSQ--------------------------VYTFGPTFRAENSNTSRHLA 239
PKT +G ID+SQ VYTFGPTFRAENSNTSRHLA
Sbjct: 182 QPPKTPEGKIDFSQDFFGRRAYLTVSGQLEAEIMATAFTNVYTFGPTFRAENSNTSRHLA 241
Query: 240 EFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 299
EFWM+EPE+AF DL+ DM A A+LQ+V RY+LD+C EDM FF I+ ++ +A
Sbjct: 242 EFWMVEPEMAFCDLRGDMELAEAFLQFVFRYVLDHCPEDMAFFQERIDHSVMATAEQMAT 301
Query: 300 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 359
+ F LSY++AI++L K+ + FEF V WG DLQSEHERYL EE + PVIV DYP IK
Sbjct: 302 QPFAHLSYSEAIQVLEKSGRAFEFPVAWGLDLQSEHERYLAEE-YCQRPVIVYDYPAAIK 360
Query: 360 AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLR 419
AFYMR NDDG+TVAAMD+L P+IGE+IGGSQREER + L+ R+ L+ YWWYLDLR
Sbjct: 361 AFYMRLNDDGKTVAAMDILAPKIGEIIGGSQREERFDVLQERIVTQGLDPAPYWWYLDLR 420
Query: 420 HYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461
YGSVPHAGFGLGFERLVQF TG++NIRD IPFPRTPG+ EF
Sbjct: 421 RYGSVPHAGFGLGFERLVQFMTGMDNIRDVIPFPRTPGNAEF 462
|
Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|A0PY64|SYN_CLONN Asparagine--tRNA ligase OS=Clostridium novyi (strain NT) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/459 (52%), Positives = 322/459 (70%), Gaps = 39/459 (8%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
G + ++GW+RTLRA + FIEVNDGS N+Q V ++ E + ++ I++ SI +
Sbjct: 18 GKEVKISGWIRTLRASNKFGFIEVNDGSFFKNIQVVFGAELENFKEISKYAISS--SISV 75
Query: 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+G VV ++G+KQ E+ K+VL GKSD YP+QKKR + E+LR+ AHLRPR+N F AV
Sbjct: 76 EGEVVITEGAKQPFEIHAKKVVLEGKSDADYPLQKKRHTFEYLRSIAHLRPRSNAFSAVF 135
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVR+ AYA HKFFQ+ GF+++ +PIIT SDCEGAGE F VTTL E+P P
Sbjct: 136 RVRSLAAYAIHKFFQDQGFVYVHTPIITGSDCEGAGEMFRVTTL------DMENP----P 185
Query: 209 KTKDGLIDWSQ--------------------------VYTFGPTFRAENSNTSRHLAEFW 242
K + G +D+ + VYTFGPTFRAENSNT+RH +EFW
Sbjct: 186 KDEKGNVDYKEDFFGKQANLTVSGQLEAEIYALAFRNVYTFGPTFRAENSNTARHASEFW 245
Query: 243 MIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 302
MIEPE+AFA+LKD M A ++Y++ Y+ +N E+M+FFN +I+KG+++RL V DF
Sbjct: 246 MIEPEMAFAELKDYMDVAEQMVKYIINYVRENAPEEMEFFNKFIDKGLLERLDNVVNSDF 305
Query: 303 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 362
++SYT+A+E+L K+ +FE+ V+WG DLQ+EHERYLTE+ + PV V+DYPK+IKAFY
Sbjct: 306 ARISYTEAVEILQKSGAEFEYPVEWGIDLQTEHERYLTEQIYKK-PVFVTDYPKDIKAFY 364
Query: 363 MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG 422
MR NDD +TVAA D+LVP IGE+IGGSQREERL+ LE R+ EL L ++ YWWYL+LR YG
Sbjct: 365 MRMNDDNKTVAAADLLVPGIGEIIGGSQREERLDILEARMAELGLEKEDYWWYLELRKYG 424
Query: 423 SVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461
HAG+GLGFER++ + TG+ NIRD IPFPRTPG EF
Sbjct: 425 ETKHAGYGLGFERMIMYLTGMGNIRDVIPFPRTPGVSEF 463
|
Clostridium novyi (strain NT) (taxid: 386415) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|B2UXS0|SYN_CLOBA Asparagine--tRNA ligase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 505 bits (1301), Expect = e-142, Method: Compositional matrix adjust.
Identities = 238/456 (52%), Positives = 320/456 (70%), Gaps = 39/456 (8%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
++++GW+RTLRA ++ FIE+NDGS N+Q V + ++ + +SI + G
Sbjct: 22 VMISGWIRTLRASNAFGFIEINDGSFFKNIQVVFDDKLGNFKEISK--LPISSSISVVGT 79
Query: 92 VVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVR 151
+V + +KQ E++ +IV+ G S+ YP+QKKR + E+LR+ AHLRPR+N F A RVR
Sbjct: 80 LVATPDAKQPFEIQAKEIVIEGMSNSDYPLQKKRHTFEYLRSIAHLRPRSNAFSATFRVR 139
Query: 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTK 211
+ A+A HKFFQE GF++ +PIIT SDCEGAGE F VTTL P + E TK
Sbjct: 140 SVAAFAIHKFFQEQGFVYTHTPIITGSDCEGAGEMFRVTTLDPKAPEL----------TK 189
Query: 212 DGLIDWSQ--------------------------VYTFGPTFRAENSNTSRHLAEFWMIE 245
+G ID+++ +YTFGPTFRAENSNT+RH AEFWMIE
Sbjct: 190 EGNIDYTKDFFGKETNLTVSGQLNAECFALAFRNIYTFGPTFRAENSNTTRHAAEFWMIE 249
Query: 246 PELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQL 305
PE+AFADL+DDM A A L+YV++Y++D C E++ FFN++++KG+++RL+ V DF ++
Sbjct: 250 PEIAFADLQDDMELAEAMLKYVIKYVMDECPEELQFFNSFVDKGLLERLNHVVSSDFAKV 309
Query: 306 SYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQ 365
+YT+A+E+L K K+F++ V WG DLQ+EHERYLTEE F P+ V+DYPKEIKAFYMR
Sbjct: 310 TYTEAVEILEKCDKEFDYDVSWGIDLQTEHERYLTEEHFKK-PLFVTDYPKEIKAFYMRM 368
Query: 366 NDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVP 425
N+D +TVAA D+LVP IGE+IGGSQREERL+ LE R+ EL L ++ YWWYL+LR YG
Sbjct: 369 NEDNKTVAATDLLVPGIGEIIGGSQREERLDVLEARMAELGLKKEDYWWYLELRKYGETK 428
Query: 426 HAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461
HAGFGLGFERL+ + TG+ NIRD IPFPRTPG+ EF
Sbjct: 429 HAGFGLGFERLIMYITGMTNIRDVIPFPRTPGTSEF 464
|
Clostridium botulinum (strain Alaska E43 / Type E3) (taxid: 508767) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|B2TI01|SYN_CLOBB Asparagine--tRNA ligase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 505 bits (1301), Expect = e-142, Method: Compositional matrix adjust.
Identities = 238/456 (52%), Positives = 320/456 (70%), Gaps = 39/456 (8%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
++++GW+RTLRA ++ FIE+NDGS N+Q V + ++ + +SI + G
Sbjct: 22 VMISGWIRTLRASNAFGFIEINDGSFFKNIQVVFDDKLGNFKEISK--LPISSSISVVGT 79
Query: 92 VVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVR 151
+V + +KQ E++ +IV+ G S+ YP+QKKR + E+LR+ AHLRPR+N F A RVR
Sbjct: 80 LVATPDAKQPFEIQAKEIVIEGMSNSDYPLQKKRHTFEYLRSIAHLRPRSNAFSATFRVR 139
Query: 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTK 211
+ A+A HKFFQE GF++ +PIIT SDCEGAGE F VTTL P + E TK
Sbjct: 140 SVAAFAIHKFFQEQGFVYTHTPIITGSDCEGAGEMFRVTTLDPKAPEL----------TK 189
Query: 212 DGLIDWSQ--------------------------VYTFGPTFRAENSNTSRHLAEFWMIE 245
+G ID+++ +YTFGPTFRAENSNT+RH AEFWMIE
Sbjct: 190 EGDIDYTKDFFGKETNLTVSGQLNAECFALAFRNIYTFGPTFRAENSNTTRHAAEFWMIE 249
Query: 246 PELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQL 305
PE+AFADL+DDM A A L+YV++Y++D C E++ FFN++++KG+++RL+ V DF ++
Sbjct: 250 PEIAFADLQDDMELAEAMLKYVIKYVMDECPEELQFFNSFVDKGLLERLNHVVSSDFAKV 309
Query: 306 SYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQ 365
+YT+A+E+L K K+F++ V WG DLQ+EHERYLTEE F P+ V+DYPKEIKAFYMR
Sbjct: 310 TYTEAVEILEKCDKEFDYDVSWGIDLQTEHERYLTEEHFKK-PLFVTDYPKEIKAFYMRM 368
Query: 366 NDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVP 425
N+D +TVAA D+LVP IGE+IGGSQREERL+ LE R+ EL L ++ YWWYL+LR YG
Sbjct: 369 NEDNKTVAATDLLVPGIGEIIGGSQREERLDVLEARMAELGLKKEDYWWYLELRKYGETK 428
Query: 426 HAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461
HAGFGLGFERL+ + TG+ NIRD IPFPRTPG+ EF
Sbjct: 429 HAGFGLGFERLIMYITGMTNIRDVIPFPRTPGTSEF 464
|
Clostridium botulinum (strain Eklund 17B / Type B) (taxid: 508765) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 461 | ||||||
| 224093120 | 578 | predicted protein [Populus trichocarpa] | 1.0 | 0.797 | 0.839 | 0.0 | |
| 224133182 | 574 | predicted protein [Populus trichocarpa] | 1.0 | 0.803 | 0.827 | 0.0 | |
| 359495974 | 584 | PREDICTED: asparaginyl-tRNA synthetase, | 0.997 | 0.787 | 0.820 | 0.0 | |
| 449458950 | 562 | PREDICTED: asparagine--tRNA ligase, chlo | 0.997 | 0.818 | 0.781 | 0.0 | |
| 2664210 | 566 | asparaginyl-tRNA synthetase [Arabidopsis | 1.0 | 0.814 | 0.784 | 0.0 | |
| 15236037 | 567 | asparaginyl-tRNA synthetase [Arabidopsis | 1.0 | 0.813 | 0.784 | 0.0 | |
| 297804454 | 567 | hypothetical protein ARALYDRAFT_914989 [ | 1.0 | 0.813 | 0.784 | 0.0 | |
| 356514300 | 551 | PREDICTED: asparaginyl-tRNA synthetase, | 0.991 | 0.829 | 0.779 | 0.0 | |
| 356565357 | 550 | PREDICTED: asparaginyl-tRNA synthetase, | 0.991 | 0.830 | 0.777 | 0.0 | |
| 357476849 | 565 | Asparaginyl-tRNA synthetase [Medicago tr | 0.986 | 0.805 | 0.753 | 0.0 |
| >gi|224093120|ref|XP_002309798.1| predicted protein [Populus trichocarpa] gi|222852701|gb|EEE90248.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/487 (83%), Positives = 439/487 (90%), Gaps = 26/487 (5%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
+G++VGEFRKKLKI D+KGGP+EGLDRVG IVV GWVRTLR QSSVTFIEVNDGSCLSN
Sbjct: 92 VGNRVGEFRKKLKIADIKGGPDEGLDRVGKTIVVMGWVRTLRVQSSVTFIEVNDGSCLSN 151
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
MQCVM +AEGYDQV+SGLITTGASI +QG VV SQGSKQKVELKVNKIVLVGKSDPSYP
Sbjct: 152 MQCVMGLEAEGYDQVESGLITTGASILVQGTVVESQGSKQKVELKVNKIVLVGKSDPSYP 211
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDC
Sbjct: 212 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDC 271
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ--------------------- 219
EGAGEQFCVTTLIP S+E A SPVD IPKTKDGLIDWSQ
Sbjct: 272 EGAGEQFCVTTLIPGSQEVANSPVDRIPKTKDGLIDWSQDFFGKPAFLTVSGQLNAETYA 331
Query: 220 -----VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 274
VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV++IL+N
Sbjct: 332 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLTDDMACATAYLQYVVKHILEN 391
Query: 275 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 334
CKEDM+FFNTWIEKGIIDRL+ VAE+DFVQL+YTDA+ELL+KAKKKFEF V+WGCDLQSE
Sbjct: 392 CKEDMEFFNTWIEKGIIDRLTDVAEKDFVQLTYTDAVELLLKAKKKFEFPVEWGCDLQSE 451
Query: 335 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 394
HERY+TEEAFGGCPVI+ DYPK+IKAFYMRQNDDG+TVAAMDMLVPR+GELIGGSQREER
Sbjct: 452 HERYITEEAFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPRVGELIGGSQREER 511
Query: 395 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 454
LEYLE RLDELKLN++S+WWYLDLR YGSVPHAGFGLGFERLVQFATG+ENIRDAIPFPR
Sbjct: 512 LEYLEDRLDELKLNKESFWWYLDLRRYGSVPHAGFGLGFERLVQFATGLENIRDAIPFPR 571
Query: 455 TPGSVEF 461
PGS EF
Sbjct: 572 VPGSAEF 578
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133182|ref|XP_002327980.1| predicted protein [Populus trichocarpa] gi|222837389|gb|EEE75768.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/487 (82%), Positives = 437/487 (89%), Gaps = 26/487 (5%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
+G++VGEFR+KLKI D+KGGP+EGLDRVG I+V GWVRTLR QSSVTFIEVNDGSCLSN
Sbjct: 88 IGNRVGEFRRKLKIADIKGGPDEGLDRVGKTIIVMGWVRTLRVQSSVTFIEVNDGSCLSN 147
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVM +AEGYDQV+SGL+TTGASIW+QG VV SQGSKQKVELKV KIV VGKSDPSYP
Sbjct: 148 LQCVMDLEAEGYDQVESGLVTTGASIWMQGTVVKSQGSKQKVELKVIKIVAVGKSDPSYP 207
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDC
Sbjct: 208 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDC 267
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ--------------------- 219
EGAGEQFCVTTLIP S+EAA SPVD IPKTKDGLIDWSQ
Sbjct: 268 EGAGEQFCVTTLIPGSQEAANSPVDGIPKTKDGLIDWSQDFFGKPAFLTVSGQLNAETYA 327
Query: 220 -----VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 274
VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVVR+IL+N
Sbjct: 328 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVRHILEN 387
Query: 275 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 334
CKEDM+FFNTWIEKGIIDRLS V E+DFVQL+YTDAIELL+KAKKKFEF ++WGCDLQSE
Sbjct: 388 CKEDMEFFNTWIEKGIIDRLSDVVEKDFVQLTYTDAIELLLKAKKKFEFPLEWGCDLQSE 447
Query: 335 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 394
HERY+TEE FGGCPVI+ DYPK+IKAFYMRQNDDG+TVAAMDMLVPR+GELIGGSQREER
Sbjct: 448 HERYITEEVFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPRVGELIGGSQREER 507
Query: 395 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 454
LEY+E RLDELKLN++S+WWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRDAIPFPR
Sbjct: 508 LEYIEDRLDELKLNKESFWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPR 567
Query: 455 TPGSVEF 461
PGS EF
Sbjct: 568 VPGSAEF 574
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495974|ref|XP_003635124.1| PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like isoform 2 [Vitis vinifera] gi|297744376|emb|CBI37350.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 814 bits (2103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/486 (82%), Positives = 433/486 (89%), Gaps = 26/486 (5%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G KVGEFRK+L++VD+KGGP+EGLDR+G + V GWVRTLR QSSV FIEVNDGSCLSNM
Sbjct: 99 GEKVGEFRKRLRVVDIKGGPDEGLDRLGQTLAVKGWVRTLRVQSSVIFIEVNDGSCLSNM 158
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCVM SDA+GYDQV+SG ITTGAS+ IQG +V SQGSKQKVELKV KIV VGKSDPS+PI
Sbjct: 159 QCVMNSDADGYDQVESGSITTGASVSIQGTLVASQGSKQKVELKVLKIVTVGKSDPSFPI 218
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+WISSPIITASDCE
Sbjct: 219 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWISSPIITASDCE 278
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ---------------------- 219
GAGEQFCVTTLIPSSREA +S VDAIPK KDGLIDWSQ
Sbjct: 279 GAGEQFCVTTLIPSSREATDSTVDAIPKAKDGLIDWSQDFFGKPAFLTVSGQLNAETYAT 338
Query: 220 ----VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 275
VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV YIL+NC
Sbjct: 339 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVTYILENC 398
Query: 276 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 335
KEDM+FFNTWIEKGII+RLS VAE++FVQL+YTDA+ELL++A KKFEF VKWGCDLQSEH
Sbjct: 399 KEDMEFFNTWIEKGIINRLSDVAEKNFVQLTYTDAVELLLRANKKFEFPVKWGCDLQSEH 458
Query: 336 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 395
ERY+TE AFGGCPVI+ DYPK+IKAFYMR+NDDG+TVAAMDMLVPR+GELIGGSQREERL
Sbjct: 459 ERYITEVAFGGCPVIIRDYPKDIKAFYMRRNDDGKTVAAMDMLVPRVGELIGGSQREERL 518
Query: 396 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455
EYLE RLD+LKL++DSYWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRDAIPFPRT
Sbjct: 519 EYLEERLDDLKLSKDSYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRT 578
Query: 456 PGSVEF 461
PGS EF
Sbjct: 579 PGSAEF 584
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458950|ref|XP_004147209.1| PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449504980|ref|XP_004162346.1| PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/486 (78%), Positives = 426/486 (87%), Gaps = 26/486 (5%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G KVGEFRKKL+I ++KGG +EG+DR+G VV GWVRTLR QSSVTF+EVNDGSC+SNM
Sbjct: 77 GEKVGEFRKKLRISEIKGGRDEGVDRLGQTFVVMGWVRTLRVQSSVTFMEVNDGSCISNM 136
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCV+ S EGYDQV+SGLITTGAS+W++G VV SQGSKQKVELK+ K+++VGKSDPS+P+
Sbjct: 137 QCVIDSTTEGYDQVESGLITTGASVWVEGVVVASQGSKQKVELKLQKVIVVGKSDPSFPV 196
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKK+VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCE
Sbjct: 197 QKKKVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 256
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ---------------------- 219
GAGEQFCVTTLIPSS E A S V +IPKTK+G IDWSQ
Sbjct: 257 GAGEQFCVTTLIPSSGEPARSDVGSIPKTKEGFIDWSQDFFGKPAFLTVSGQLNAETYAT 316
Query: 220 ----VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 275
VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDM+CATAYLQYVVR+IL+NC
Sbjct: 317 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMSCATAYLQYVVRHILENC 376
Query: 276 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 335
KED+DFFNTWIEKGIIDRL+ + E DFVQL YTDAIELL++A KKFE+ VKWG DLQSEH
Sbjct: 377 KEDLDFFNTWIEKGIIDRLTNLVENDFVQLPYTDAIELLLRANKKFEYPVKWGSDLQSEH 436
Query: 336 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 395
ERY+TE AFGGCPVI+ DYP++IKAFYMRQNDDG+TVAAMDMLVP+IGELIGGSQREERL
Sbjct: 437 ERYITEVAFGGCPVIIRDYPRDIKAFYMRQNDDGKTVAAMDMLVPKIGELIGGSQREERL 496
Query: 396 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455
+YLE RLD+LKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRDAIPFPR+
Sbjct: 497 DYLEARLDDLKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDAIPFPRS 556
Query: 456 PGSVEF 461
PGS EF
Sbjct: 557 PGSAEF 562
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2664210|emb|CAA10904.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/487 (78%), Positives = 423/487 (86%), Gaps = 26/487 (5%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 80 FGSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 139
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYP
Sbjct: 140 LQCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYP 199
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 200 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 259
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ--------------------- 219
EGAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQ
Sbjct: 260 EGAGEQFCVTTLIPSSHEYTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 319
Query: 220 -----VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 274
VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDN
Sbjct: 320 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDN 379
Query: 275 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 334
CKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG DLQSE
Sbjct: 380 CKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDLQSE 439
Query: 335 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 394
HERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQREER
Sbjct: 440 HERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREER 499
Query: 395 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 454
LE LE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD IPFPR
Sbjct: 500 LEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPR 559
Query: 455 TPGSVEF 461
TP S EF
Sbjct: 560 TPASAEF 566
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236037|ref|NP_193462.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana] gi|55584148|sp|O48593.3|SYNO_ARATH RecName: Full=Asparagine--tRNA ligase, chloroplastic/mitochondrial; AltName: Full=Asparaginyl-tRNA synthetase; Short=AsnRS; Flags: Precursor gi|19310458|gb|AAL84964.1| AT4g17300/dl4685w [Arabidopsis thaliana] gi|332658474|gb|AEE83874.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/487 (78%), Positives = 423/487 (86%), Gaps = 26/487 (5%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 81 FGSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 140
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYP
Sbjct: 141 LQCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYP 200
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 201 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 260
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ--------------------- 219
EGAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQ
Sbjct: 261 EGAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 320
Query: 220 -----VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 274
VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDN
Sbjct: 321 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDN 380
Query: 275 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 334
CKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG DLQSE
Sbjct: 381 CKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDLQSE 440
Query: 335 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 394
HERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQREER
Sbjct: 441 HERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREER 500
Query: 395 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 454
LE LE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD IPFPR
Sbjct: 501 LEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPR 560
Query: 455 TPGSVEF 461
TP S EF
Sbjct: 561 TPASAEF 567
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804454|ref|XP_002870111.1| hypothetical protein ARALYDRAFT_914989 [Arabidopsis lyrata subsp. lyrata] gi|297315947|gb|EFH46370.1| hypothetical protein ARALYDRAFT_914989 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/487 (78%), Positives = 422/487 (86%), Gaps = 26/487 (5%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKLKI +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 81 FGSKVGEFRKKLKIAEVKGGADEGLGRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 140
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVM SDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VGK D SYP
Sbjct: 141 LQCVMNSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGKCDSSYP 200
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 201 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 260
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ--------------------- 219
EGAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQ
Sbjct: 261 EGAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 320
Query: 220 -----VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 274
VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDN
Sbjct: 321 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDN 380
Query: 275 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 334
CKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA +KF+F VKWG DLQSE
Sbjct: 381 CKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEVLLKANRKFDFPVKWGLDLQSE 440
Query: 335 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 394
HERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQREER
Sbjct: 441 HERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREER 500
Query: 395 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 454
LE LE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD IPFPR
Sbjct: 501 LEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPR 560
Query: 455 TPGSVEF 461
TP S EF
Sbjct: 561 TPASAEF 567
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514300|ref|XP_003525844.1| PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/485 (77%), Positives = 421/485 (86%), Gaps = 28/485 (5%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
++V +FR+KL++ ++K G +G D G +VV GWVRTLR QS VTF+E+NDGSCLSNMQ
Sbjct: 69 NRVQQFRRKLRVSEIKEG--DGADVFGRNLVVQGWVRTLRIQSIVTFLEINDGSCLSNMQ 126
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122
CV+ S+AEGYDQV+SGL+TTGAS+W+QG VV SQGSKQKVELKVNKIVL+GKSDPS+PIQ
Sbjct: 127 CVLNSEAEGYDQVESGLVTTGASVWVQGVVVKSQGSKQKVELKVNKIVLIGKSDPSFPIQ 186
Query: 123 KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182
KKR SREFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCEG
Sbjct: 187 KKRASREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEG 246
Query: 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ----------------------- 219
AGEQFCVTTLIPSS E +SPVDAIPKT DGLIDWSQ
Sbjct: 247 AGEQFCVTTLIPSSHETTDSPVDAIPKTNDGLIDWSQDFFGKPAFLTVSGQLNGETYATS 306
Query: 220 ---VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 276
VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ+V+R++LDNCK
Sbjct: 307 LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRHVLDNCK 366
Query: 277 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHE 336
EDM+FF+TWI KGIIDRLS VA++D VQ++YT+AI+LL A KKFEF VKWG DLQSEHE
Sbjct: 367 EDMEFFDTWINKGIIDRLSDVADKDVVQITYTEAIDLLSGANKKFEFPVKWGSDLQSEHE 426
Query: 337 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLE 396
RY+TEEAF GCPVI+ DYPK+IKAFYMRQNDDGRTVAAMDMLVP IGELIGGSQREERLE
Sbjct: 427 RYITEEAFSGCPVIIRDYPKDIKAFYMRQNDDGRTVAAMDMLVPGIGELIGGSQREERLE 486
Query: 397 YLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 456
YLE RLD+LKLN+D+YWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRD IPFPRTP
Sbjct: 487 YLEARLDDLKLNKDAYWWYLDLRRYGSVPHAGFGLGFERLVQFATGMDNIRDVIPFPRTP 546
Query: 457 GSVEF 461
GS EF
Sbjct: 547 GSAEF 551
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565357|ref|XP_003550908.1| PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/485 (77%), Positives = 421/485 (86%), Gaps = 28/485 (5%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
++V +FR+KL++ ++K G +G D +G +VV GWVRTLR QSSVTF+E+NDGSCLSNMQ
Sbjct: 68 NRVQQFRRKLRVSEIKEG--DGADVLGRNLVVQGWVRTLRIQSSVTFLEINDGSCLSNMQ 125
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122
CV+ S+AEGYDQV+SGL+TTGAS+W+QG VV SQGSKQKVELKVNKIVL+GKSDPS+PIQ
Sbjct: 126 CVLNSEAEGYDQVESGLVTTGASVWVQGVVVKSQGSKQKVELKVNKIVLIGKSDPSFPIQ 185
Query: 123 KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182
KKR SREFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCEG
Sbjct: 186 KKRASREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEG 245
Query: 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ----------------------- 219
AGEQFCVTTLIPSS E +SPVDAIPKT DGLIDWSQ
Sbjct: 246 AGEQFCVTTLIPSSHETNDSPVDAIPKTNDGLIDWSQDFFGKPAFLTVSGQLNGETYATA 305
Query: 220 ---VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 276
VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ+V+R++LDNCK
Sbjct: 306 LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRHVLDNCK 365
Query: 277 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHE 336
EDM+FF+ WI KGIIDRLS VA++D VQ++YT+AI+LL A KKFEF VKWG DLQSEHE
Sbjct: 366 EDMEFFDAWINKGIIDRLSDVADKDVVQITYTEAIDLLSGANKKFEFPVKWGSDLQSEHE 425
Query: 337 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLE 396
RY+TEE F GCPVI+ DYPK+IKAFYMRQNDDGRTVAAMDMLVP IGELIGGSQREERLE
Sbjct: 426 RYITEEVFSGCPVIIRDYPKDIKAFYMRQNDDGRTVAAMDMLVPGIGELIGGSQREERLE 485
Query: 397 YLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 456
YLE RLD+LKLN+D+YWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRD IPFPRTP
Sbjct: 486 YLEARLDDLKLNKDAYWWYLDLRRYGSVPHAGFGLGFERLVQFATGMDNIRDVIPFPRTP 545
Query: 457 GSVEF 461
GS EF
Sbjct: 546 GSAEF 550
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476849|ref|XP_003608710.1| Asparaginyl-tRNA synthetase [Medicago truncatula] gi|355509765|gb|AES90907.1| Asparaginyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/504 (75%), Positives = 425/504 (84%), Gaps = 49/504 (9%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
+KV +FRKKLK+ DVK G D +G +V+ GWVRTLR QSSVTF+E+NDGSCLSNMQ
Sbjct: 66 NKVPQFRKKLKVSDVKDGQ---FDSLGNTLVLQGWVRTLRLQSSVTFLEINDGSCLSNMQ 122
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122
CV+ ++ EGYDQV+SGLITTGAS+W+QG VV SQG+KQKVELK+NKIVLVGKSDPS+PIQ
Sbjct: 123 CVLDTEVEGYDQVESGLITTGASVWVQGIVVKSQGTKQKVELKLNKIVLVGKSDPSFPIQ 182
Query: 123 KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182
KKRVSREFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCEG
Sbjct: 183 KKRVSREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEG 242
Query: 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ----------------------- 219
AGEQFCVTTLIP+S E A+SPVDAIPK D LIDWSQ
Sbjct: 243 AGEQFCVTTLIPNSHETADSPVDAIPK-NDKLIDWSQDFFGKPAFLTVSGQLNAETYATA 301
Query: 220 ---VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 276
VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ+V+R+ILDNCK
Sbjct: 302 LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRHILDNCK 361
Query: 277 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHE 336
EDM+FFNTWI+KGIIDRLS VAE+D +Q++YT+A++LL +A KKFEF VKWGCDLQSEHE
Sbjct: 362 EDMEFFNTWIDKGIIDRLSDVAEKDVLQITYTEAVDLLSRANKKFEFPVKWGCDLQSEHE 421
Query: 337 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR--------------- 381
RY+TEEAFGGCPVI+ DYPK+IKAFYMRQNDDG+TVAAMDMLVP+
Sbjct: 422 RYITEEAFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPKLGALIVCQCWAGEPR 481
Query: 382 ----IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLV 437
IGELIGGSQREERLE+LE RLD+LKLN+D+YWWYLDLR YGSVPHAGFGLGFERLV
Sbjct: 482 DYITIGELIGGSQREERLEHLEARLDDLKLNKDAYWWYLDLRRYGSVPHAGFGLGFERLV 541
Query: 438 QFATGVENIRDAIPFPRTPGSVEF 461
QFATG++NIRD IPFPRTPGS EF
Sbjct: 542 QFATGMDNIRDVIPFPRTPGSAEF 565
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 461 | ||||||
| TAIR|locus:2130804 | 567 | NS1 [Arabidopsis thaliana (tax | 0.529 | 0.430 | 0.803 | 1.6e-204 | |
| TIGR_CMR|GSU_1156 | 461 | GSU_1156 "asparaginyl-tRNA syn | 0.932 | 0.932 | 0.537 | 3.9e-124 | |
| TAIR|locus:2014005 | 571 | SYNC3 [Arabidopsis thaliana (t | 0.527 | 0.425 | 0.578 | 2.2e-118 | |
| TIGR_CMR|BA_4802 | 463 | BA_4802 "asparaginyl-tRNA synt | 0.932 | 0.928 | 0.487 | 5.8e-114 | |
| TAIR|locus:2165001 | 572 | SYNC1 [Arabidopsis thaliana (t | 0.524 | 0.423 | 0.589 | 7.8e-114 | |
| TIGR_CMR|SO_2218 | 466 | SO_2218 "asparaginyl-tRNA synt | 0.906 | 0.896 | 0.488 | 3.6e-105 | |
| UNIPROTKB|P0A8M0 | 466 | asnS "asparaginyl-tRNA synthet | 0.904 | 0.894 | 0.491 | 2.9e-103 | |
| TIGR_CMR|CPS_2591 | 466 | CPS_2591 "asparaginyl-tRNA syn | 0.796 | 0.787 | 0.520 | 6.4e-99 | |
| UNIPROTKB|Q9KSF9 | 466 | asnS "Asparagine--tRNA ligase" | 0.796 | 0.787 | 0.520 | 1.2e-95 | |
| TIGR_CMR|VC_1297 | 466 | VC_1297 "asparaginyl-tRNA synt | 0.796 | 0.787 | 0.520 | 1.2e-95 |
| TAIR|locus:2130804 NS1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1066 (380.3 bits), Expect = 1.6e-204, Sum P(2) = 1.6e-204
Identities = 196/244 (80%), Positives = 214/244 (87%)
Query: 218 SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE 277
S VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+Y+LDNCKE
Sbjct: 324 SDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDNCKE 383
Query: 278 DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHER 337
DM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG DLQSEHER
Sbjct: 384 DMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDLQSEHER 443
Query: 338 YLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXX 397
Y+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQ
Sbjct: 444 YITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQREERLEV 503
Query: 398 XXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 457
KLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD IPFPRTP
Sbjct: 504 LEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPRTPA 563
Query: 458 SVEF 461
S EF
Sbjct: 564 SAEF 567
|
|
| TIGR_CMR|GSU_1156 GSU_1156 "asparaginyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
Identities = 241/448 (53%), Positives = 307/448 (68%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
G ++V GWVRT R V F+ VNDGSCL+++Q V Y +++ I TGA++ +
Sbjct: 17 GTEVIVKGWVRTSRVGKGVAFLAVNDGSCLASLQVVAEPGLANYHELRG--IGTGAAVAV 74
Query: 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+G V S + Q VEL K+V+VG +D YP+QKKR + E+LRT AHLRPR+NTFGAV
Sbjct: 75 RGIVAESPAAGQAVELHATKVVVVGGADEQYPLQKKRHTFEYLRTIAHLRPRSNTFGAVF 134
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVR++LA A H+FF E GF+++ +PIIT SDCEGAGE F VTTL PS+ A+ VD
Sbjct: 135 RVRSSLAQAVHRFFAERGFLYVHTPIITTSDCEGAGELFRVTTLDPSAPPMADGAVDFSQ 194
Query: 209 K--------TKDGLID-------WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 253
T G ++ +S +YTFGPTFRAENSNT RH AEFWMIEPE+AFADL
Sbjct: 195 DFFAAQAGLTVSGQLEGELFAQAFSDIYTFGPTFRAENSNTPRHAAEFWMIEPEMAFADL 254
Query: 254 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 313
+DD A A + +Y+ R++LDNC EDM FFN +++G++ R+ VA F + Y AIE
Sbjct: 255 RDDAALAEDFFRYLCRHVLDNCAEDMAFFNEHVDRGLLARVEQVAGSSFAMMEYGVAIEH 314
Query: 314 LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 373
L +A FE+ V+WG DLQ+EHERYLTE+ GG PV V +YP+EIKAFYMR+NDDGRTVA
Sbjct: 315 LKRAAVPFEYPVEWGLDLQTEHERYLTEQVVGG-PVFVVNYPQEIKAFYMRRNDDGRTVA 373
Query: 374 AMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGF 433
AMD+LVP++GE+IGGSQ + +S WWYLD R +GS PHAGFGLGF
Sbjct: 374 AMDLLVPKVGEIIGGSQREERYDLLESRMREGGIAPESLWWYLDSRRWGSTPHAGFGLGF 433
Query: 434 ERLVQFATGVENIRDAIPFPRTPGSVEF 461
ERL+ + TG+ENIRD IPFPRTP EF
Sbjct: 434 ERLIMYLTGMENIRDVIPFPRTPRHAEF 461
|
|
| TAIR|locus:2014005 SYNC3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 755 (270.8 bits), Expect = 2.2e-118, Sum P(2) = 2.2e-118
Identities = 143/247 (57%), Positives = 181/247 (73%)
Query: 218 SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE 277
S VYTFGPTFRAENS+TSRHLAEFWM+EPE+AFAD+ DDM CA AY++Y+ ++++D C +
Sbjct: 324 SSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADIHDDMNCAEAYVKYMCKWLMDKCGD 383
Query: 278 DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA----KKKFEFLVKWGCDLQS 333
DM+ + +++G RL+ VA+ F +++YT+AIE L KA K F+ V+WG DL S
Sbjct: 384 DMELMDKNVDEGCTKRLNMVAKASFKRVTYTEAIERLEKAVAQGKVVFDNKVEWGIDLAS 443
Query: 334 EHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXX 393
EHERYLTE F P+IV +YPK IKAFYMR NDD +TVAAMD+LVP++GELIGGSQ
Sbjct: 444 EHERYLTEVEFDQKPIIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQREE 503
Query: 394 XXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
L + Y WYLDLR YG+V H GFGLGFER++QFATG++NIRD IPFP
Sbjct: 504 RYDVIKQRIEEMGLPMEPYEWYLDLRRYGTVKHCGFGLGFERMIQFATGIDNIRDVIPFP 563
Query: 454 RTPGSVE 460
R PG +
Sbjct: 564 RYPGKAD 570
|
|
| TIGR_CMR|BA_4802 BA_4802 "asparaginyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
Identities = 219/449 (48%), Positives = 301/449 (67%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
G + V+GW+R LR + FIE+NDGS ++Q V ++ + + ++ + +S+ +
Sbjct: 18 GQTVQVSGWIRNLRDSKAFGFIELNDGSFFKSVQIVFDTELDNFKEIAK--LPLSSSVKV 75
Query: 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+G V+ + G+KQ E+K KI + G SD YP+QKKR + E+LRT AHLRPRTN F A
Sbjct: 76 EGKVIATPGAKQPFEIKAEKIDIEGLSDSDYPLQKKRHTFEYLRTIAHLRPRTNAFSATF 135
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL----IPSSREA-AESP 203
RVR+ A+A H+FFQE GF+ + +PIIT SD EGAGE F VTT +P + +
Sbjct: 136 RVRSIAAFAIHQFFQERGFVHVHTPIITGSDTEGAGEMFRVTTQDLNNVPKGEDGQVDES 195
Query: 204 VDAIPK----TKDGLID-------WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252
D K T G ++ + VYTFGPTFRAENSNT+RH AEFWM+EPE+AFA+
Sbjct: 196 KDFFGKETNLTVSGQLNAEAYALAFRDVYTFGPTFRAENSNTTRHAAEFWMVEPEIAFAE 255
Query: 253 LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIE 312
L D M L+Y ++Y+L++ E+M+FFN++++K +++R++ V DF +++YT+AI+
Sbjct: 256 LGDVMNLTEDMLKYAMKYVLEHAPEEMEFFNSFVDKTVLERMNNVINSDFGRITYTEAIK 315
Query: 313 LLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTV 372
+L ++ F++ V+WG DLQ+EHERYL+EE F PV V+DYPK+IKAFYMR NDDG+TV
Sbjct: 316 VLQESGADFKYPVEWGIDLQTEHERYLSEEIFKR-PVFVTDYPKDIKAFYMRLNDDGKTV 374
Query: 373 AAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLG 432
AA D+LVP IGELIGGSQ +N + YWWYL+LR YG HAGFGLG
Sbjct: 375 AATDLLVPGIGELIGGSQREERMDVLVDRIKELGMNEEDYWWYLELRKYGGTKHAGFGLG 434
Query: 433 FERLVQFATGVENIRDAIPFPRTPGSVEF 461
FER + + TG+ NIRD IPFPRTPGS EF
Sbjct: 435 FERFLMYITGMANIRDVIPFPRTPGSSEF 463
|
|
| TAIR|locus:2165001 SYNC1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 737 (264.5 bits), Expect = 7.8e-114, Sum P(2) = 7.8e-114
Identities = 145/246 (58%), Positives = 177/246 (71%)
Query: 218 SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKE 277
S VYTFGPTFRAENS+TSRHLAEFWM+EPE+AFADL+DDM CA AY++Y+ ++L+ C
Sbjct: 327 SNVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCNWLLEKCYA 386
Query: 278 DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK---KKFEFLVKWGCDLQSE 334
DM+ + G IDRL VA F +++YT AIELL +A K+F+ V+WG DL SE
Sbjct: 387 DMELMAKNFDSGCIDRLKLVASTPFGRITYTKAIELLEEAVAKGKEFDNNVEWGIDLASE 446
Query: 335 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXX 394
HERYLTE F P+IV +YPK IKAFYMR NDD +TVAAMD+LVP++GELIGGSQ
Sbjct: 447 HERYLTEVLFQK-PLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQREER 505
Query: 395 XXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 454
L + Y WYLDLR YG+V H GFGLGFER++ FATG++NIRD IPFPR
Sbjct: 506 YDVIKKRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGLDNIRDVIPFPR 565
Query: 455 TPGSVE 460
PG +
Sbjct: 566 YPGKAD 571
|
|
| TIGR_CMR|SO_2218 SO_2218 "asparaginyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
Identities = 213/436 (48%), Positives = 278/436 (63%)
Query: 43 AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVV-PSQGSKQK 101
+++ ++F+ V DGSC + +Q V+ + E YD L + I V P G +
Sbjct: 32 SKAGISFLAVYDGSCFNPIQGVVPNSLENYDNEVLKLTAGCSVIVTGDIVESPGAGQAYE 91
Query: 102 VELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKF 161
+++ ++ + +YP+ KR S E LR AHLRPRTN GAVARVRN L+ A H+F
Sbjct: 92 LQVTAVEVTGWVEDPDTYPMAAKRHSIEHLRELAHLRPRTNIIGAVARVRNCLSQAIHRF 151
Query: 162 FQENGFIWISSPIITASDCEGAGEQFCVTTL----IPSSREA-AESPVDAIPK----TKD 212
+ ENGF+W+S+P+ITASDCEGAGE F V+TL +P + + + D K T
Sbjct: 152 YHENGFVWVSTPLITASDCEGAGEMFRVSTLDMENLPRTSDGKVDYDKDFFGKEAFLTVS 211
Query: 213 GLIDW-------SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQ 265
G ++ S++YTFGPTFRAENSNTSRHLAEFWM+EPE+AFA L D A L+
Sbjct: 212 GQLNGETYACALSKIYTFGPTFRAENSNTSRHLAEFWMVEPEVAFATLNDIAGLAEGMLK 271
Query: 266 YVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLV 325
Y +L +D+ FF ++K +I+RL + DF Q+ YTDA+E+L K+ ++FEF V
Sbjct: 272 YAFNAVLTERMDDLQFFAQHVDKTVIERLQSFVSSDFAQVDYTDAVEILQKSGREFEFPV 331
Query: 326 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGEL 385
WG DL SEHERYL EE F PV+V +YPK+IKAFYMR N+DG+TVAAMD+L P IGE+
Sbjct: 332 SWGIDLSSEHERYLAEEHFKA-PVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEI 390
Query: 386 IGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVEN 445
IGGSQ LN++ YWWY DLR YG+VPHAGFGLGFERLV + TGV N
Sbjct: 391 IGGSQREERLDVLDMRLEEMDLNKEDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVSN 450
Query: 446 IRDAIPFPRTPGSVEF 461
IRD IPFPR P + F
Sbjct: 451 IRDVIPFPRAPRTANF 466
|
|
| UNIPROTKB|P0A8M0 asnS "asparaginyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
Identities = 215/437 (49%), Positives = 279/437 (63%)
Query: 43 AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVV-PSQGSKQK 101
+++ ++F+ V DGSC +Q V+ + Y++ L T + I V P QG + +
Sbjct: 32 SKAGISFLAVYDGSCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFE 91
Query: 102 VEL-KVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHK 160
++ KV V D +YP+ KR S E+LR AHLRPRTN GAVARVR+ LA A H+
Sbjct: 92 IQASKVEVAGWVEDPD-TYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHR 150
Query: 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTL----IPSSREA-AESPVDAIPK----TK 211
FF E GF W+S+P+ITASD EGAGE F V+TL +P + + + D K T
Sbjct: 151 FFNEQGFFWVSTPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTV 210
Query: 212 DGLIDW-------SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYL 264
G ++ S++YTFGPTFRAENSNTSRHLAEFWM+EPE+AFA+L D A A L
Sbjct: 211 SGQLNGETYACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAML 270
Query: 265 QYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL 324
+YV + +L+ +DM FF ++K + RL E DF Q+ YTDA+ +L +KFE
Sbjct: 271 KYVFKAVLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENP 330
Query: 325 VKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE 384
V WG DL SEHERYL EE F PV+V +YPK+IKAFYMR N+DG+TVAAMD+L P IGE
Sbjct: 331 VYWGVDLSSEHERYLAEEHFKA-PVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGE 389
Query: 385 LIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 444
+IGGSQ LN++ YWWY DLR YG+VPH+GFGLGFERL+ + TGV+
Sbjct: 390 IIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQ 449
Query: 445 NIRDAIPFPRTPGSVEF 461
N+RD IPFPRTP + F
Sbjct: 450 NVRDVIPFPRTPRNASF 466
|
|
| TIGR_CMR|CPS_2591 CPS_2591 "asparaginyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
Identities = 200/384 (52%), Positives = 254/384 (66%)
Query: 94 PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNA 153
P +G +++ +++ + +YP+ KR S EFLR +AHLRPRTN GAV RVRN
Sbjct: 84 PGKGQAFEIQATEVEVLGFVEDPDTYPMAAKRHSIEFLREQAHLRPRTNIGGAVTRVRNC 143
Query: 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL----IPSSREA-AESPVDAIP 208
LA A H+F G+ WIS+P+IT SDCEGAGE F V+TL +P + E + D
Sbjct: 144 LAQAVHRFLHSKGYFWISTPLITGSDCEGAGEMFRVSTLDMENLPRNDEGKVDYNKDFFG 203
Query: 209 K----TKDGLID-------WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM 257
K T G ++ S+VYTFGPTFRAENSNT+RHLAEFWM+EPE+AFADL D
Sbjct: 204 KETFLTVSGQLNVETYCNALSKVYTFGPTFRAENSNTTRHLAEFWMVEPEIAFADLSDAA 263
Query: 258 ACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA 317
A L+YV + +L+ +DM FF ++K ++DRL++V DFV+L YTDAI +L
Sbjct: 264 DLAEEMLKYVFKAVLEERPDDMAFFQQRVDKTVLDRLNSVINTDFVRLDYTDAITILENC 323
Query: 318 KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDM 377
KKFE V WG DL SEHERYL EE F G PV++ +YPK+IK+FYMR NDDG+TVAAMD+
Sbjct: 324 GKKFENQVSWGVDLNSEHERYLAEEHFNG-PVVLQNYPKDIKSFYMRLNDDGKTVAAMDI 382
Query: 378 LVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLV 437
L P IGE+IGGSQ L+ Y WY DLR YG+VPH+GFGLGFERLV
Sbjct: 383 LAPGIGEIIGGSQREERLDVLDSRLEEMGLDIADYGWYRDLRRYGTVPHSGFGLGFERLV 442
Query: 438 QFATGVENIRDAIPFPRTPGSVEF 461
+ATG++N+RD IPFPRTP + F
Sbjct: 443 AYATGMQNVRDVIPFPRTPNNAAF 466
|
|
| UNIPROTKB|Q9KSF9 asnS "Asparagine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
Identities = 200/384 (52%), Positives = 248/384 (64%)
Query: 94 PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNA 153
P+ G ++ K+V + +YP+ K R S E+LR AHLRPRTN GAVARVRN
Sbjct: 84 PASGQAFELAASDVKVVGWVEDADTYPMAKTRHSIEYLREVAHLRPRTNVIGAVARVRNC 143
Query: 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL----IPSSREA-AESPVDAIP 208
LA A H+F+ E G+ W+S+P+ITASD EGAGE F V+TL +P + + D
Sbjct: 144 LAQAIHRFYHEQGYFWVSAPLITASDAEGAGEMFRVSTLDMENLPRTDAGKVDYNQDFFG 203
Query: 209 K----TKDGLIDW-------SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM 257
K T G ++ S+VYTFGPTFRAENSNTSRHLAEFWM+EPE+AFADL
Sbjct: 204 KETFLTVSGQLNAEAYACAISKVYTFGPTFRAENSNTSRHLAEFWMVEPEVAFADLNTVA 263
Query: 258 ACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA 317
A L+YV + +L ++D++FFN I +I RL E DF Q+ YTDAIE+L
Sbjct: 264 KLAEDMLKYVFKAVLAERRDDLEFFNDRINNEVIARLEQFVESDFAQVDYTDAIEILKNC 323
Query: 318 KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDM 377
K FEF V+WG DL SEHER+L EE F PVIV +YPK+IKAFYMR N+DG+TVAAMD+
Sbjct: 324 GKTFEFPVEWGIDLASEHERFLAEEHFKA-PVIVKNYPKDIKAFYMRMNEDGKTVAAMDV 382
Query: 378 LVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLV 437
L P IGE+IGGSQ ++ + WY DLR YG+VPHAGFGLGFERLV
Sbjct: 383 LAPGIGEIIGGSQREERLDILDARMREFGIDPEHMDWYRDLRRYGTVPHAGFGLGFERLV 442
Query: 438 QFATGVENIRDAIPFPRTPGSVEF 461
+ TG+ N+RD IPFPRTP S F
Sbjct: 443 SYVTGMGNVRDVIPFPRTPRSASF 466
|
|
| TIGR_CMR|VC_1297 VC_1297 "asparaginyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
Identities = 200/384 (52%), Positives = 248/384 (64%)
Query: 94 PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNA 153
P+ G ++ K+V + +YP+ K R S E+LR AHLRPRTN GAVARVRN
Sbjct: 84 PASGQAFELAASDVKVVGWVEDADTYPMAKTRHSIEYLREVAHLRPRTNVIGAVARVRNC 143
Query: 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL----IPSSREA-AESPVDAIP 208
LA A H+F+ E G+ W+S+P+ITASD EGAGE F V+TL +P + + D
Sbjct: 144 LAQAIHRFYHEQGYFWVSAPLITASDAEGAGEMFRVSTLDMENLPRTDAGKVDYNQDFFG 203
Query: 209 K----TKDGLIDW-------SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM 257
K T G ++ S+VYTFGPTFRAENSNTSRHLAEFWM+EPE+AFADL
Sbjct: 204 KETFLTVSGQLNAEAYACAISKVYTFGPTFRAENSNTSRHLAEFWMVEPEVAFADLNTVA 263
Query: 258 ACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA 317
A L+YV + +L ++D++FFN I +I RL E DF Q+ YTDAIE+L
Sbjct: 264 KLAEDMLKYVFKAVLAERRDDLEFFNDRINNEVIARLEQFVESDFAQVDYTDAIEILKNC 323
Query: 318 KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDM 377
K FEF V+WG DL SEHER+L EE F PVIV +YPK+IKAFYMR N+DG+TVAAMD+
Sbjct: 324 GKTFEFPVEWGIDLASEHERFLAEEHFKA-PVIVKNYPKDIKAFYMRMNEDGKTVAAMDV 382
Query: 378 LVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLV 437
L P IGE+IGGSQ ++ + WY DLR YG+VPHAGFGLGFERLV
Sbjct: 383 LAPGIGEIIGGSQREERLDILDARMREFGIDPEHMDWYRDLRRYGTVPHAGFGLGFERLV 442
Query: 438 QFATGVENIRDAIPFPRTPGSVEF 461
+ TG+ N+RD IPFPRTP S F
Sbjct: 443 SYVTGMGNVRDVIPFPRTPRSASF 466
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A3D3V7 | SYN_SHEB5 | 6, ., 1, ., 1, ., 2, 2 | 0.5213 | 0.9262 | 0.9163 | yes | no |
| O48593 | SYNO_ARATH | 6, ., 1, ., 1, ., 2, 2 | 0.7843 | 1.0 | 0.8130 | yes | no |
| B1XKH1 | SYN_SYNP2 | 6, ., 1, ., 1, ., 2, 2 | 0.5369 | 0.9284 | 0.9304 | yes | no |
| P43829 | SYN_HAEIN | 6, ., 1, ., 1, ., 2, 2 | 0.5093 | 0.9457 | 0.9336 | yes | no |
| B0UTU8 | SYN_HAES2 | 6, ., 1, ., 1, ., 2, 2 | 0.5161 | 0.9154 | 0.9036 | yes | no |
| Q317J6 | SYN_DESDG | 6, ., 1, ., 1, ., 2, 2 | 0.5448 | 0.9262 | 0.9262 | yes | no |
| Q5QZ13 | SYN_IDILO | 6, ., 1, ., 1, ., 2, 2 | 0.5315 | 0.9067 | 0.8969 | yes | no |
| A3QE68 | SYN_SHELP | 6, ., 1, ., 1, ., 2, 2 | 0.5237 | 0.9132 | 0.9034 | yes | no |
| A1RK52 | SYN_SHESW | 6, ., 1, ., 1, ., 2, 2 | 0.5192 | 0.9262 | 0.9163 | yes | no |
| Q24MK1 | SYN_DESHY | 6, ., 1, ., 1, ., 2, 2 | 0.5330 | 0.9002 | 0.8963 | yes | no |
| P52276 | SYN_SYNY3 | 6, ., 1, ., 1, ., 2, 2 | 0.5650 | 0.9284 | 0.9264 | N/A | no |
| Q6ANL4 | SYN_DESPS | 6, ., 1, ., 1, ., 2, 2 | 0.5407 | 0.8980 | 0.9220 | yes | no |
| Q97E56 | SYN_CLOAB | 6, ., 1, ., 1, ., 2, 2 | 0.5076 | 0.9110 | 0.9071 | yes | no |
| Q11Q97 | SYN_CYTH3 | 6, ., 1, ., 1, ., 2, 2 | 0.5095 | 0.9674 | 0.9612 | yes | no |
| Q0HUL3 | SYN_SHESR | 6, ., 1, ., 1, ., 2, 2 | 0.5192 | 0.9262 | 0.9163 | yes | no |
| A5G5R2 | SYN_GEOUR | 6, ., 1, ., 1, ., 2, 2 | 0.5555 | 0.9370 | 0.9370 | yes | no |
| A0PY64 | SYN_CLONN | 6, ., 1, ., 1, ., 2, 2 | 0.5272 | 0.9110 | 0.9071 | yes | no |
| A0KXL6 | SYN_SHESA | 6, ., 1, ., 1, ., 2, 2 | 0.5128 | 0.9262 | 0.9163 | yes | no |
| Q0HIB6 | SYN_SHESM | 6, ., 1, ., 1, ., 2, 2 | 0.5170 | 0.9262 | 0.9163 | yes | no |
| A7GB01 | SYN_CLOBL | 6, ., 1, ., 1, ., 2, 2 | 0.5175 | 0.9045 | 0.9006 | yes | no |
| A3DBI2 | SYN_CLOTH | 6, ., 1, ., 1, ., 2, 2 | 0.5345 | 0.9479 | 0.9418 | yes | no |
| B0JN99 | SYN_MICAN | 6, ., 1, ., 1, ., 2, 2 | 0.5782 | 0.9240 | 0.9383 | yes | no |
| Q3IGU4 | SYN_PSEHT | 6, ., 1, ., 1, ., 2, 2 | 0.5185 | 0.9045 | 0.8967 | yes | no |
| Q72G53 | SYN_DESVH | 6, ., 1, ., 1, ., 2, 2 | 0.5525 | 0.9284 | 0.9284 | yes | no |
| P58692 | SYN_NOSS1 | 6, ., 1, ., 1, ., 2, 2 | 0.5446 | 0.9197 | 0.9157 | yes | no |
| P58693 | SYN_CLOPE | 6, ., 1, ., 1, ., 2, 2 | 0.5207 | 0.9045 | 0.8967 | yes | no |
| A5UF16 | SYN_HAEIG | 6, ., 1, ., 1, ., 2, 2 | 0.5114 | 0.9457 | 0.9336 | yes | no |
| A8MJ91 | SYN_ALKOO | 6, ., 1, ., 1, ., 2, 2 | 0.5242 | 0.9219 | 0.9179 | yes | no |
| A6WMP4 | SYN_SHEB8 | 6, ., 1, ., 1, ., 2, 2 | 0.5213 | 0.9262 | 0.9163 | yes | no |
| A1V9B8 | SYN_DESVV | 6, ., 1, ., 1, ., 2, 2 | 0.5525 | 0.9284 | 0.9284 | yes | no |
| Q12MT5 | SYN_SHEDO | 6, ., 1, ., 1, ., 2, 2 | 0.5226 | 0.9154 | 0.9055 | yes | no |
| A5HZE1 | SYN_CLOBH | 6, ., 1, ., 1, ., 2, 2 | 0.5219 | 0.9045 | 0.9006 | yes | no |
| Q39SY7 | SYN_GEOMG | 6, ., 1, ., 1, ., 2, 2 | 0.5407 | 0.9609 | 0.9609 | yes | no |
| Q0SQ51 | SYN_CLOPS | 6, ., 1, ., 1, ., 2, 2 | 0.5207 | 0.9045 | 0.8967 | yes | no |
| Q8DG51 | SYN_THEEB | 6, ., 1, ., 1, ., 2, 2 | 0.5649 | 0.9175 | 0.9155 | yes | no |
| Q081Q0 | SYN_SHEFN | 6, ., 1, ., 1, ., 2, 2 | 0.5170 | 0.9219 | 0.9120 | yes | no |
| Q8EEZ1 | SYN_SHEON | 6, ., 1, ., 1, ., 2, 2 | 0.5170 | 0.9262 | 0.9163 | yes | no |
| Q74E08 | SYN_GEOSL | 6, ., 1, ., 1, ., 2, 2 | 0.5374 | 0.9631 | 0.9631 | yes | no |
| Q73P19 | SYN_TREDE | 6, ., 1, ., 1, ., 2, 2 | 0.5257 | 0.9240 | 0.9006 | yes | no |
| Q6MEC9 | SYN_PARUW | 6, ., 1, ., 1, ., 2, 2 | 0.5723 | 0.9696 | 0.9571 | yes | no |
| A7FRK8 | SYN_CLOB1 | 6, ., 1, ., 1, ., 2, 2 | 0.5219 | 0.9045 | 0.9006 | yes | no |
| Q899M9 | SYN_CLOTE | 6, ., 1, ., 1, ., 2, 2 | 0.5083 | 0.9457 | 0.9416 | yes | no |
| A6LPI6 | SYN_CLOB8 | 6, ., 1, ., 1, ., 2, 2 | 0.5219 | 0.9045 | 0.8987 | yes | no |
| Q0TMF3 | SYN_CLOP1 | 6, ., 1, ., 1, ., 2, 2 | 0.5207 | 0.9045 | 0.8967 | yes | no |
| Q0I2M9 | SYN_HAES1 | 6, ., 1, ., 1, ., 2, 2 | 0.5161 | 0.9154 | 0.9036 | yes | no |
| A5UCB9 | SYN_HAEIE | 6, ., 1, ., 1, ., 2, 2 | 0.5072 | 0.9457 | 0.9336 | yes | no |
| A5N4F7 | SYN_CLOK5 | 6, ., 1, ., 1, ., 2, 2 | 0.5021 | 0.9045 | 0.9006 | yes | no |
| B2UXS0 | SYN_CLOBA | 6, ., 1, ., 1, ., 2, 2 | 0.5219 | 0.9045 | 0.8987 | yes | no |
| Q8RH70 | SYN_FUSNN | 6, ., 1, ., 1, ., 2, 2 | 0.5063 | 0.9436 | 0.9436 | yes | no |
| B2TI01 | SYN_CLOBB | 6, ., 1, ., 1, ., 2, 2 | 0.5219 | 0.9045 | 0.8987 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.22 | 0.991 |
| 3rd Layer | 6.1.1 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 461 | |||
| PLN02603 | 565 | PLN02603, PLN02603, asparaginyl-tRNA synthetase | 0.0 | |
| PRK03932 | 450 | PRK03932, asnC, asparaginyl-tRNA synthetase; Valid | 0.0 | |
| TIGR00457 | 453 | TIGR00457, asnS, asparaginyl-tRNA synthetase | 0.0 | |
| COG0017 | 435 | COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas | 1e-180 | |
| PLN02221 | 572 | PLN02221, PLN02221, asparaginyl-tRNA synthetase | 1e-162 | |
| PTZ00425 | 586 | PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis | 1e-154 | |
| cd00776 | 322 | cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As | 1e-131 | |
| PLN02532 | 633 | PLN02532, PLN02532, asparagine-tRNA synthetase | 5e-94 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 1e-73 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 3e-72 | |
| TIGR00458 | 428 | TIGR00458, aspS_nondisc, nondiscriminating asparty | 2e-50 | |
| PRK06462 | 335 | PRK06462, PRK06462, asparagine synthetase A; Revie | 2e-46 | |
| PLN02532 | 633 | PLN02532, PLN02532, asparagine-tRNA synthetase | 8e-38 | |
| PLN02850 | 530 | PLN02850, PLN02850, aspartate-tRNA ligase | 1e-31 | |
| cd04318 | 82 | cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-termina | 4e-30 | |
| cd00669 | 269 | cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn | 1e-29 | |
| PTZ00401 | 550 | PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov | 3e-24 | |
| cd04100 | 85 | cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter | 2e-15 | |
| COG1190 | 502 | COG1190, LysU, Lysyl-tRNA synthetase (class II) [T | 6e-15 | |
| cd00777 | 280 | cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c | 4e-13 | |
| TIGR00499 | 496 | TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar | 7e-13 | |
| cd00775 | 329 | cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c | 1e-09 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 1e-08 | |
| PRK00484 | 491 | PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | 1e-08 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 6e-08 | |
| PRK12445 | 505 | PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe | 1e-07 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 6e-07 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 6e-07 | |
| cd04323 | 84 | cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-t | 1e-06 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 1e-05 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 3e-05 | |
| PLN02502 | 553 | PLN02502, PLN02502, lysyl-tRNA synthetase | 4e-05 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 3e-04 | |
| cd00768 | 211 | cd00768, class_II_aaRS-like_core, Class II tRNA am | 4e-04 | |
| cd04320 | 102 | cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, a | 0.001 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 0.004 |
| >gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 934 bits (2415), Expect = 0.0
Identities = 403/486 (82%), Positives = 429/486 (88%), Gaps = 26/486 (5%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G VGEFRKKL+I DVKGG +EGL RVG + V GWVRTLRAQSSVTFIEVNDGSCLSNM
Sbjct: 80 GEAVGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNM 139
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCVMT DAEGYDQV+SGLITTGAS+ +QG VV SQG KQKVELKV+KIV+VGKSDPSYPI
Sbjct: 140 QCVMTPDAEGYDQVESGLITTGASVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPI 199
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCE
Sbjct: 200 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 259
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ---------------------- 219
GAGEQFCVTTLIP+S E S VD IPKTKDGLIDWSQ
Sbjct: 260 GAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYAT 319
Query: 220 ----VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC 275
VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQYVV+YIL+NC
Sbjct: 320 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENC 379
Query: 276 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 335
KEDM+FFNTWIEKGIIDRLS V E++FVQLSYTDAIELL+KAKKKFEF VKWG DLQSEH
Sbjct: 380 KEDMEFFNTWIEKGIIDRLSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEH 439
Query: 336 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 395
ERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPR+GELIGGSQREERL
Sbjct: 440 ERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRVGELIGGSQREERL 499
Query: 396 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455
EYLE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRDAIPFPR
Sbjct: 500 EYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRV 559
Query: 456 PGSVEF 461
PGS EF
Sbjct: 560 PGSAEF 565
|
Length = 565 |
| >gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 721 bits (1865), Expect = 0.0
Identities = 260/467 (55%), Positives = 326/467 (69%), Gaps = 33/467 (7%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA 69
++ I D+ G VG + V GWVRT R + F+++ DGSC +Q V +
Sbjct: 2 MRVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCFKQLQVVKDNGE 56
Query: 70 EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE 129
E ++++K +TTG+S+ + G VV S + Q EL+ KI ++G+ YPIQKKR S E
Sbjct: 57 EYFEEIKK--LTTGSSVIVTGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIE 114
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR AHLRPRTN FGAV R+RN LA A H+FF ENGF+W+ +PIITASDCEGAGE F V
Sbjct: 115 FLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRV 174
Query: 190 TTLIPSS------REA---------AESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNT 234
TTL +EA AE+ A+ +VYTFGPTFRAENSNT
Sbjct: 175 TTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMAL----------GKVYTFGPTFRAENSNT 224
Query: 235 SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRL 294
RHLAEFWMIEPE+AFADL+D+M A L+YVV+Y+L+NC +D++F N ++KG I+RL
Sbjct: 225 RRHLAEFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERL 284
Query: 295 STVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDY 354
E F +++YT+AIE+L K+ KKFEF V+WG DL SEHERYL EE F PV V++Y
Sbjct: 285 ENFIESPFPRITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEHFK-KPVFVTNY 343
Query: 355 PKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWW 414
PK+IKAFYMR N DG+TVAAMD+L P IGE+IGGSQREERL+ LE R+ EL LN++ YWW
Sbjct: 344 PKDIKAFYMRLNPDGKTVAAMDLLAPGIGEIIGGSQREERLDVLEARIKELGLNKEDYWW 403
Query: 415 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461
YLDLR YGSVPH+GFGLGFERLV + TG++NIRD IPFPRTPG EF
Sbjct: 404 YLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGRAEF 450
|
Length = 450 |
| >gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 578 bits (1492), Expect = 0.0
Identities = 236/450 (52%), Positives = 313/450 (69%), Gaps = 27/450 (6%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + V+GWVRT R+ + F+E+NDGS L +Q V+ + Y +TTG+S+
Sbjct: 15 VGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVS 74
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGA 146
+ G VV S G Q VEL+V KI +VG+++P YP+QKK S EFLR AHLR RTNT GA
Sbjct: 75 VTGKVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGA 134
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTT--------------- 191
V RVRNAL+ A H++FQENGF W+S PI+T++DCEGAGE F V+T
Sbjct: 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTGNIDFSQDFFGKEAY 194
Query: 192 LIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 251
L S + E+ A+ S+VYTFGPTFRAE SNTSRHL+EFWMIEPE+AFA
Sbjct: 195 LTVSGQLYLETYALAL----------SKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFA 244
Query: 252 DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 311
+L D + A ++Y+++ +L+NC +++ F +K +I RL + F +++YTDAI
Sbjct: 245 NLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAI 304
Query: 312 ELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRT 371
E+L ++ K FE+ WG DLQ+EHER+L EE F PV V++YPK+IKAFYM+ NDDG+T
Sbjct: 305 EILKESDKNFEYEDFWGDDLQTEHERFLAEEYFKP-PVFVTNYPKDIKAFYMKLNDDGKT 363
Query: 372 VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGL 431
VAAMD+L P IGE+IGGS+RE+ L+ LE R+ E+ L+ D+ WYLDLR YGSVPH+GFGL
Sbjct: 364 VAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGL 423
Query: 432 GFERLVQFATGVENIRDAIPFPRTPGSVEF 461
GFERL+ + TG+ENIRDAIPFPRTPG++ F
Sbjct: 424 GFERLLAYITGLENIRDAIPFPRTPGNINF 453
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn [Protein synthesis, tRNA aminoacylation]. Length = 453 |
| >gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 511 bits (1318), Expect = e-180
Identities = 196/465 (42%), Positives = 268/465 (57%), Gaps = 41/465 (8%)
Query: 8 FRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS 67
K+ I D+K P+ G V V GWV R + F+ + DGS +Q V+
Sbjct: 1 MMKRTYIKDIK--PHVGGQEV----TVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPK 52
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS 127
+ + K+ +T +S+ + G V S + Q EL+V KI ++G++DP YPI KK S
Sbjct: 53 NKVYEELFKAKKLTLESSVVVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHS 112
Query: 128 R-EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
E L HL RT AV ++R+++ A +FF ENGF + +PIITAS EG GE
Sbjct: 113 ELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGGGEL 172
Query: 187 FCVTTLIPSSREA--AESP-------VDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRH 237
F V +EA +SP A+ +V+T GPTFRAE SNT RH
Sbjct: 173 FKVDYF---DKEAYLTQSPQLYKEALAAAL----------ERVFTIGPTFRAEKSNTRRH 219
Query: 238 LAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 297
L+EFWM++PE+AFADL D M A ++Y+ + +L+ C ++++F + L
Sbjct: 220 LSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGRDNSE-----LKRP 274
Query: 298 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKE 357
F +++Y +AIE+L +K FE V+WG DL +EHERYL EE F PV V++YPKE
Sbjct: 275 ESAPFPRITYKEAIEIL--EEKGFEK-VEWGDDLGTEHERYLGEEYFKP-PVFVTNYPKE 330
Query: 358 IKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYL 416
IK FYMR + D TVA+ D+L P GE+IGGSQRE + L R+ E L+ +SY WYL
Sbjct: 331 IKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYL 390
Query: 417 DLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461
DLR YG PHAGFGLG ERLV + G++NIR+AIPFPR PG +
Sbjct: 391 DLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDPGRLYP 435
|
Length = 435 |
| >gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 471 bits (1212), Expect = e-162
Identities = 245/551 (44%), Positives = 328/551 (59%), Gaps = 102/551 (18%)
Query: 7 EFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCV 64
+F ++ I + P+ G G + + GWV+T R Q + F+EVNDGSC +N+Q +
Sbjct: 28 QFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVM 87
Query: 65 MTSDAEGYDQVKSGLITTGASIWIQGNV-VP--SQGSKQKVELKVNKIVLVGKSDPS-YP 120
+ D+ YD S L+ TG + + G + VP +G+KQK+EL V K++ VG DP+ YP
Sbjct: 88 V--DSSLYDL--STLVATGTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYP 143
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPII----- 175
+ K +++ EFLR HLR RTN+ AVAR+RNALA+ATH FFQE+ F++I +PII
Sbjct: 144 LPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDC 203
Query: 176 -----------------------------TASDCEGA-------GEQFCVTTLIPSSREA 199
T +D E A GE +S+E
Sbjct: 204 EGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEE 263
Query: 200 AESPV--------------------DAIPKTKDGLIDWSQ-------------------- 219
+ V +PK KDG ID+S+
Sbjct: 264 ITAAVAELKIAKESLAHIEERSKLKPGLPK-KDGKIDYSKDFFGRQAFLTVSGQLQVETY 322
Query: 220 ------VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILD 273
VYTFGPTFRAENS+TSRHLAEFWM+EPE+AFADL+DDM CA AY++Y+ +++LD
Sbjct: 323 ACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLD 382
Query: 274 NCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA---KKKFEFLVKWGCD 330
C +DM+ + G IDRL VA F +++YT+AIELL +A K+F+ V+WG D
Sbjct: 383 KCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAVAKGKEFDNNVEWGID 442
Query: 331 LQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQ 390
L SEHERYLTE F P+IV +YPK IKAFYMR NDD +TVAAMD+LVP++GELIGGSQ
Sbjct: 443 LASEHERYLTEVLFQK-PLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQ 501
Query: 391 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 450
REER + ++ R++E+ L + Y WYLDLR YG+V H GFGLGFER++ FATG++NIRD I
Sbjct: 502 REERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVI 561
Query: 451 PFPRTPGSVEF 461
PFPR PG +
Sbjct: 562 PFPRYPGKADL 572
|
Length = 572 |
| >gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 449 bits (1156), Expect = e-154
Identities = 228/511 (44%), Positives = 303/511 (59%), Gaps = 81/511 (15%)
Query: 28 VGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGA 84
+ +I V GW + +R Q F+ +NDGSC N+Q ++ E Y+++ K G+ G
Sbjct: 80 IDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLKCGV---GC 136
Query: 85 SIWIQGNVV--PSQGS------KQKVELKVN-----KIVLVGKS-DPS-YPIQKKRVSRE 129
G ++ P Q K+ VEL + + G++ DP YP+ KK +E
Sbjct: 137 CFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKE 196
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR AHLRPR+ +V R+RNALA ATH FFQ GF++I +P+IT SDCEG GE F V
Sbjct: 197 FLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTV 256
Query: 190 TTL---------IPSSR-----------------------EAAESPVDAIPKTKDG-LID 216
TTL IP ++ S + P D LID
Sbjct: 257 TTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYLID 316
Query: 217 WSQ--------------------------VYTFGPTFRAENSNTSRHLAEFWMIEPELAF 250
+ + VYTFGPTFRAENS+TSRHLAEFWMIEPE+AF
Sbjct: 317 YKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAF 376
Query: 251 ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 310
ADL D+M A +Y++Y + Y+L+N +D+ +F +E G+I RL + + DF +++YT+
Sbjct: 377 ADLYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNV 436
Query: 311 IELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGR 370
I+LL FE VKWG DLQSEHER++ E+ F PVIV +YPK++KAFYM+ N+D +
Sbjct: 437 IDLLQPYSDSFEVPVKWGMDLQSEHERFVAEQIFKK-PVIVYNYPKDLKAFYMKLNEDQK 495
Query: 371 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFG 430
TVAAMD+LVP+IGE+IGGSQRE+ LE L+ + E KLN +SYWWY LR +GS PHAGFG
Sbjct: 496 TVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHAGFG 555
Query: 431 LGFERLVQFATGVENIRDAIPFPRTPGSVEF 461
LGFERL+ TGV+NI+D IPFPR PG EF
Sbjct: 556 LGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586
|
Length = 586 |
| >gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Score = 381 bits (982), Expect = e-131
Identities = 140/347 (40%), Positives = 197/347 (56%), Gaps = 39/347 (11%)
Query: 125 RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAG 184
+ E L HL RT A+ R+R+ + A +F +ENGF + +P IT++D EG
Sbjct: 1 DANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGG- 59
Query: 185 EQFCVTTLIPSS---REA--AESP-------VDAIPKTKDGLIDWSQVYTFGPTFRAENS 232
L S + A A+SP + A+ +VY GP FRAE S
Sbjct: 60 -----AELFKVSYFGKPAYLAQSPQLYKEMLIAAL----------ERVYEIGPVFRAEKS 104
Query: 233 NTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGII 291
NT RHL+EFWM+E E+AF D + M ++Y+ + +L+ C ++++ N +
Sbjct: 105 NTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVN------QL 158
Query: 292 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIV 351
+R F +++Y +AIELL + + E VKWG DL +EHER L E G PV V
Sbjct: 159 NRELLKPLEPFPRITYDEAIELLREKGVEEE--VKWGEDLSTEHERLLGEIVKGD-PVFV 215
Query: 352 SDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD 410
+DYPKEIK FYM+ +DD TV + D+L+P +GE++GGSQR + LE R+ E L+ +
Sbjct: 216 TDYPKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPE 275
Query: 411 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 457
S+ WYLDLR YG PH GFGLG ERLV + G++NIR+AI FPR P
Sbjct: 276 SFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAILFPRDPK 322
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 322 |
| >gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Score = 296 bits (760), Expect = 5e-94
Identities = 149/366 (40%), Positives = 216/366 (59%), Gaps = 30/366 (8%)
Query: 111 LVGKSD----PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV---RNALAYATHKFFQ 163
L+GKSD + + +S E + KA ++ +TN + R R AL A +
Sbjct: 279 LLGKSDDKEEKKPVHETEGISLEAV--KAAIKEKTNLVEELKRSESNREALVAAEQDLRK 336
Query: 164 ENGFI-------WISSPIITASDCEGAGEQFCV--TTLIPSSREAAESPVDAIPKTKDGL 214
N + + +D + F T L S R ES A+
Sbjct: 337 TNQLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYACAL------- 389
Query: 215 IDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 274
VYTFGP FRA+ +++RHLAE WM+E E+AF++L+D M CA Y +++ +++L+N
Sbjct: 390 ---GNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVLEN 446
Query: 275 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA-KKKFEFLVKWGCDLQS 333
C EDM F + I+K I RL + ++SYT+A++LL +A KKFE +WG L +
Sbjct: 447 CSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKPEWGIALTT 506
Query: 334 EHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREE 393
EH YL +E + PVI+ +YPKE+K FY+R NDDG+TVAA D++VP++G +I GSQ EE
Sbjct: 507 EHLSYLADEIYKK-PVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEE 565
Query: 394 RLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
R++ L R++EL L R+ Y WYLDLR +G+V H+GF LGFE +V FATG+ ++RDAIPFP
Sbjct: 566 RMDILNARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFP 625
Query: 454 RTPGSV 459
R+ G
Sbjct: 626 RSWGKA 631
|
Length = 633 |
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 1e-73
Identities = 104/365 (28%), Positives = 155/365 (42%), Gaps = 54/365 (14%)
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
S E +L R A ++R+ + A +F E GF+ + +PI+T S EG
Sbjct: 1 SEETRLKYRYLDLRRPKMQANLKLRSKIIKAIREFLDERGFLEVETPILTKSTPEGGARD 60
Query: 187 FCVTTLIPSSREAAE-----SP--------VDAIPKTKDGLIDWSQVYTFGPTFRAENSN 233
F L+PS A E SP V + V+ P FR E+
Sbjct: 61 F----LVPSKFYAKEAYLPQSPQLYKQLLMVAGFDR----------VFQIAPCFRDEDLR 106
Query: 234 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDR 293
T RH EF ++ E++F D +D M ++YV + +L +E IE R
Sbjct: 107 TDRHPPEFTQLDLEMSFVDYEDVMDLTEDLIKYVFKKVLGKREELELLG---IELPEFPR 163
Query: 294 LSTVAER------DFVQLSYTDAIELLIKAKKKFEFLVK----------WGCDLQSEHER 337
+ T AE D L + ++ + + K EF V G E
Sbjct: 164 I-TYAEAIERYGSDKPDLRFGLELKDVTEIFKGSEFKVFAEAGDVVDKALGALRSELGEE 222
Query: 338 YLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLE 396
L ++ PV V+D+P FYM +++D D+++ GE+ GGS R E
Sbjct: 223 NLGDK-DKDNPVFVTDFPLFEHPFYMPKDEDPPGLAERFDLVLN-GGEIGGGSIRIHDPE 280
Query: 397 YLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 452
R +EL L+ + + +YLD YG PH G GLG +RLV TG+E+IR+ I F
Sbjct: 281 EQRKRFEELGLDPEEAEEKFGFYLDALKYGMPPHGGIGLGLDRLVMLLTGLESIREVIAF 340
Query: 453 PRTPG 457
P+T
Sbjct: 341 PKTRK 345
|
Length = 345 |
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 3e-72
Identities = 135/451 (29%), Positives = 213/451 (47%), Gaps = 67/451 (14%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGASIWIQ 89
+ +AGWV +R + F+ + D S + +Q V+ E ++ +K + + + +
Sbjct: 19 VTLAGWVHEIRDLGGIAFLILRDRSGI--IQVVVKKKVDEELFETIK--KLKRESVVSVT 74
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHL------------ 137
G V + + VE+ +I ++ K++ P+ +S + A L
Sbjct: 75 GTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLD---ISGK---VLAELDTRLDNRFLDLR 128
Query: 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR 197
RPR A+ ++R+ + A +F ENGF I +P I AS EG E F + +
Sbjct: 129 RPRVR---AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPIDYF---EK 182
Query: 198 EA--AESP-------VDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPEL 248
EA A+SP V A G +V+ GP FRAE NTSRHL E+ I+ E+
Sbjct: 183 EAYLAQSPQLYKQMMVGA------GF---ERVFEIGPVFRAEEHNTSRHLNEYTSIDVEM 233
Query: 249 AFADL-KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSY 307
F D +D M L+Y+ + +NC+++++ + V E +++Y
Sbjct: 234 GFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIELP---------VPETPIPRITY 284
Query: 308 TDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA---FGGCPVIVSDYPKEIKAFY-M 363
+AIE+L + + WG DL +E ER L E +G ++DYP E + FY M
Sbjct: 285 DEAIEILKSKGNE----ISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTM 340
Query: 364 RQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS 423
DD + D+L + E+ G QR R + L + E LN +S+ +YL+ YG
Sbjct: 341 PDEDDPEISKSFDLLFRGL-EITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGM 399
Query: 424 VPHAGFGLGFERLVQFATGVENIRDAIPFPR 454
PH GFGLG ERL G+ENIR+A+ FPR
Sbjct: 400 PPHGGFGLGLERLTMKLLGLENIREAVLFPR 430
|
Length = 437 |
| >gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 2e-50
Identities = 126/432 (29%), Positives = 199/432 (46%), Gaps = 30/432 (6%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGASIWIQG 90
+ GWV +R + F+ + D L +Q + + K + + + ++G
Sbjct: 15 VTFMGWVHEIRDLGGLIFVLLRDREGL--IQITAPAKKVSKNLFKWAKKLNLESVVAVRG 72
Query: 91 NVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLR---PRTNTFGAV 147
V + + E+ KI ++ ++ P+ L T+ R R T A+
Sbjct: 73 IVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAI 132
Query: 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA--AESPVD 205
R+R+ + + +F E GFI + +P + AS EG E F +T REA +SP
Sbjct: 133 FRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPITYF---EREAFLGQSP-- 187
Query: 206 AIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQ 265
+ K + + +VY GP FRAE NT RHL E I+ E+AF D D M +
Sbjct: 188 QLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVV 247
Query: 266 YVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLV 325
V + + C ++ +EK E FV+L+Y +AIE+ + +
Sbjct: 248 RVFEDVPERCAHQLETLEFKLEK---------PEGKFVRLTYDEAIEMANAKGVE----I 294
Query: 326 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGE 384
WG DL +E E+ L EE G ++D+P EI+ FY M D+ + D++ R E
Sbjct: 295 GWGEDLSTEAEKALGEEMDG--LYFITDWPTEIRPFYTMPDEDNPEISKSFDLMY-RDLE 351
Query: 385 LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVE 444
+ G+QR + L R+ LN + + YL+ YG PHAG+GLG ER V F G++
Sbjct: 352 ISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLK 411
Query: 445 NIRDAIPFPRTP 456
NIR+A+ FPR
Sbjct: 412 NIREAVLFPRDR 423
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn) [Protein synthesis, tRNA aminoacylation]. Length = 428 |
| >gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 2e-46
Identities = 93/332 (28%), Positives = 158/332 (47%), Gaps = 50/332 (15%)
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA 206
V +V++++ T +F GF+ + PII+ T P ++ PV
Sbjct: 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISP-----------STD--PLMGLGSDLPVKQ 75
Query: 207 IP--------KTKDGLIDWSQ--------VYTFGPTFRAEN--SNTSRHLAEFWMIEPEL 248
I D +I Q ++ P FR E +T RHL EF ++ E+
Sbjct: 76 ISIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEI 135
Query: 249 AFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYT 308
ADL + M ++Y+V+ +L+ +++++FF R +R F ++++
Sbjct: 136 EGADLDEVMDLIEDLIKYLVKELLEEHEDELEFFG---------RDLPHLKRPFKRITHK 186
Query: 309 DAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD 368
+A+E+L + + L + G SE E+ L+E P + D PK + FY R+ D
Sbjct: 187 EAVEILNEEGCRGIDLEELG----SEGEKSLSEHF--EEPFWIIDIPKGSREFYDRE-DP 239
Query: 369 GRT--VAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVP 425
R + D+L+P GE + G +RE E + R+ E ++ + Y WYL++ G +P
Sbjct: 240 ERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLP 299
Query: 426 HAGFGLGFERLVQFATGVENIRDAIPFPRTPG 457
AGFG+G ERL ++ G+ +IR+ PFPR PG
Sbjct: 300 SAGFGIGVERLTRYICGLRHIREVQPFPRVPG 331
|
Length = 335 |
| >gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 8e-38
Identities = 78/205 (38%), Positives = 117/205 (57%), Gaps = 14/205 (6%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
S+V FR K++ GG + R I + ++ SV ++ ++DGSC++++Q
Sbjct: 96 SRVPIFRSIAKVL--SGGGSTYPVREKTEIAIQ---KSAPPPPSVAYLLISDGSCVASLQ 150
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQG---NVVPSQGSKQKVELKVNKIVLVGKSDPS- 118
V+ S Q L+ TG I +G +P+QG K +EL+V KI+ +G DP
Sbjct: 151 VVVDSALAPLTQ----LMATGTCILAEGVLKLPLPAQG-KHVIELEVEKILHIGTVDPEK 205
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
YP+ KKR+ + LR +H RPRT T +V RVR+AL +ATH FFQ++GF+++ PIIT +
Sbjct: 206 YPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTT 265
Query: 179 DCEGAGEQFCVTTLIPSSREAAESP 203
D G GE F VTTL+ S + E
Sbjct: 266 DATGFGEMFRVTTLLGKSDDKEEKK 290
|
Length = 633 |
| >gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-31
Identities = 119/468 (25%), Positives = 208/468 (44%), Gaps = 57/468 (12%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI----- 80
+ G +++ G V T+R + F+ + +QCV+ V G++
Sbjct: 78 ELAGSEVLIRGRVHTIRGKGKSAFLVLR--QSGFTVQCVVFVSE---VTVSKGMVKYAKQ 132
Query: 81 -TTGASIWIQGNVV----PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR------- 128
+ + + ++G V P +G+ Q+VE++V KI V K+ + P + +R
Sbjct: 133 LSRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEK 192
Query: 129 ------EFLRTKAHLRP-------RTNTFGAVARVRNALAYATHKFFQENGFIWISSPII 175
+ +R R RT A+ R+++ + +F GF+ I +P +
Sbjct: 193 ALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKL 252
Query: 176 TASDCEGAGEQFCVTTLIPSSREA--AESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSN 233
A EG F L + A A+SP + K D+ +V+ GP FRAE+S
Sbjct: 253 IAGASEGGSAVF---RLDYKGQPACLAQSP--QLHKQMAICGDFRRVFEIGPVFRAEDSF 307
Query: 234 TSRHLAEFWMIEPELAFADLKDD-MACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 292
T RHL EF ++ E+ + + + + + + CK++++ +
Sbjct: 308 THRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLK 367
Query: 293 RLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL---TEEAFGGCPV 349
L ++L++ + I++L +A + + L DL +E ER L +E +G
Sbjct: 368 YL-----PKTLRLTFAEGIQMLKEAGVEVDPL----GDLNTESERKLGQLVKEKYGTDFY 418
Query: 350 IVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN 408
I+ YP ++ FY M DD + + D+ + R E+I G+QR E LE R +E ++
Sbjct: 419 ILHRYPLAVRPFYTMPCPDDPKYSNSFDVFI-RGEEIISGAQRVHDPELLEKRAEECGID 477
Query: 409 RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 456
+ Y+D YG+ PH GFG+G ER+V G+ NIR FPR P
Sbjct: 478 VKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDP 525
|
Length = 530 |
| >gnl|CDD|239813 cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-30
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWVR++R ++FIE+NDGSCL N+Q V+ + + ++ ++TG+SI ++G
Sbjct: 2 VTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEIL--KLSTGSSIRVEGV 59
Query: 92 VVPSQGSKQKVELKVNKIVLVGK 114
+V S G+KQ EL+ KI ++G+
Sbjct: 60 LVKSPGAKQPFELQAEKIEVLGE 82
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. S. cerevisiae mtAsnRS can charge E.coli tRNA with asparagines. Mutations in the gene for S. cerevisiae mtAsnRS has been found to induce a "petite" phenotype typical for a mutation in a nuclear gene that results in a non-functioning mitochondrial protein synthesis system. Length = 82 |
| >gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-29
Identities = 69/312 (22%), Positives = 116/312 (37%), Gaps = 51/312 (16%)
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA-AESPVDAI 207
+VR+ + A F + GF+ + +P++ F V SP
Sbjct: 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFK 61
Query: 208 PKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 267
+ G +D +V+ FR E +RH EF M++ E+AFAD +D + ++++
Sbjct: 62 KRLMVGGLD--RVFEINRNFRNE-DLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHL 118
Query: 268 VRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 327
R +L F + G F +L+Y +A+E
Sbjct: 119 AREVLGVTAVTYGFEL--EDFG----------LPFPRLTYREALERY------------- 153
Query: 328 GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIG 387
G P+ ++DYP E+ + +D +A L E+
Sbjct: 154 ------------------GQPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGVEVGN 195
Query: 388 GSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 443
GS R + E +N + + +YL YG PH G G+G +RL+ T
Sbjct: 196 GSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNS 255
Query: 444 ENIRDAIPFPRT 455
IR+ I FP+
Sbjct: 256 PTIREVIAFPKM 267
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 269 |
| >gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 3e-24
Identities = 126/483 (26%), Positives = 202/483 (41%), Gaps = 64/483 (13%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTG 83
+ V +++ V T R + + F+ + DGS + D E D + G I T
Sbjct: 75 ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSDSVQAMAAVEGDVPKEMIDFI--GQIPTE 132
Query: 84 ASIWIQGNVVP-----SQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE--------F 130
+ + ++ V + S +ELKV KI V +S + P + SR+
Sbjct: 133 SIVDVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVN 192
Query: 131 LRTKAHLR---PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
T+ + R RT GA+ R+++ + +F ++ F I SP I + EG F
Sbjct: 193 FDTRLNSRWMDLRTPASGAIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVF 252
Query: 188 CVTTLIPSSREA--AESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIE 245
+ +R A A+SP G D +V+ GP FR+ENSNT RHL EF ++
Sbjct: 253 KLEYF---NRFAYLAQSPQLYKQMVLQG--DVPRVFEVGPVFRSENSNTHRHLTEFVGLD 307
Query: 246 PELA---------------FADLKDDMACATAYLQYVVR------YILDNCKEDMDFFNT 284
E+ F + + +A T L+ V + + E M
Sbjct: 308 VEMRINEHYYEVLDLAESLFNYIFERLATHTKELKAVCQQYPFEPLVWKLTPERMKELGV 367
Query: 285 W-IEKGIID------RLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHER 337
I +G+ R+ + R ++++Y IELL E + D+ + +E+
Sbjct: 368 GVISEGVEPTDKYQARVHNMDSR-MLRINYMHCIELL---NTVLEEKMAPTDDINTTNEK 423
Query: 338 Y---LTEEAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREE 393
L +E +G I +P + FY M DD R + DM + R E+ G+QR
Sbjct: 424 LLGKLVKERYGTDFFISDRFPSSARPFYTMECKDDERFTNSYDMFI-RGEEISSGAQRIH 482
Query: 394 RLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
+ L R L ++ Y+D G+ PH GFG+G ER+V G+ N+R A FP
Sbjct: 483 DPDLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRLASLFP 542
Query: 454 RTP 456
R P
Sbjct: 543 RDP 545
|
Length = 550 |
| >gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-15
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ +AGWV + R + FI++ DGS +Q V+ + G ++ + T + + + G
Sbjct: 2 VTLAGWVHSRRDHGGLIFIDLRDGS--GIVQVVVNKEELGEFFEEAEKLRTESVVGVTGT 59
Query: 92 VVPSQG---SKQKVELKVNKIVLVGK 114
VV + ++EL+ ++ ++ K
Sbjct: 60 VVKRPEGNLATGEIELQAEELEVLSK 85
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like AspRSs which are non-discriminating and can charge both tRNAAsp and tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS and LysU) encoded by two distinct genes, which are differentially regulated. The cytoplasmic and the mitochondrial isoforms of human LysRS are encoded by a single gene. Yeast cytoplasmic and mitochondrial LysRSs participate in mitochondrial import of cytoplasmic tRNAlysCUU. In addition to their housekeeping role, human LysRS may function as a signaling molecule that activates immune cells. Tomato LysRS may participate in a process possibly connected to conditions of oxidative-stress conditions or heavy metal uptake. It is known that human tRNAlys and LysRS are specifically packaged into HIV-1 suggesting a role for LysRS in tRNA packaging. AsnRS is immunodominant antigen of the filarial nematode Brugia malayai and is of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 85 |
| >gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 6e-15
Identities = 66/265 (24%), Positives = 104/265 (39%), Gaps = 50/265 (18%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR-----YILDN 274
V+ G FR E +T H EF M+E A+AD +D M ++ + + +
Sbjct: 251 VFEIGRNFRNEGIDT-THNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTY 309
Query: 275 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD--AIELLIKAKKKFEFLVKWGC--- 329
+++DF + ++D L DF L + D A EL K + E WG
Sbjct: 310 GGQEIDFSKPFKRITMVDALKEYLGVDFDDL-FDDEEAKELAKKHGIEVEKYGTWGLGHL 368
Query: 330 -DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE---- 384
+ E L E P V+D+P EI +++ P + E
Sbjct: 369 LNELFEE---LVEAKLIQ-PTFVTDHPVEISPL-AKRHRSN----------PGLTERFEL 413
Query: 385 LIGGSQRE------------ERLEYLEGRLDELKLNRDSY----WWYLDLRHYGSVPHAG 428
IGG +E ++ E E +++E + D +++ YG P G
Sbjct: 414 FIGG--KEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTGG 471
Query: 429 FGLGFERLVQFATGVENIRDAIPFP 453
G+G +RLV T +IRD I FP
Sbjct: 472 LGIGIDRLVMLLTNSPSIRDVILFP 496
|
Length = 502 |
| >gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 4e-13
Identities = 82/328 (25%), Positives = 131/328 (39%), Gaps = 72/328 (21%)
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAA--ESP--- 203
R+R+ + A F E GF+ I +PI+T S EGA + F V + + + A +SP
Sbjct: 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSRLHPGKFYALPQSPQLF 60
Query: 204 -----VDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA 258
V + + FR E+ R EF I+ E++F D +D M+
Sbjct: 61 KQLLMVSGFDR----------YFQIARCFRDEDLRADRQ-PEFTQIDIEMSFVDQEDIMS 109
Query: 259 CATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK 318
L+YV + + + F +++Y +A+E +
Sbjct: 110 LIEGLLKYVFK----------EVLGVELTT------------PFPRMTYAEAME-----R 142
Query: 319 KKFEFLVKWGCD-----LQSEHERYL-TEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTV 372
F+FL W D E R + F + +++ D
Sbjct: 143 YGFKFL--WIVDFPLFEWDEEEGRLVSAHHPF------TAPKEEDLDLLE---KDPEDAR 191
Query: 373 A-AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW----WYLDLRHYGSVPHA 427
A A D+++ + EL GGS R + E + L L+ + + L+ YG+ PH
Sbjct: 192 AQAYDLVLNGV-ELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHG 250
Query: 428 GFGLGFERLVQFATGVENIRDAIPFPRT 455
G LG +RLV TG E+IRD I FP+T
Sbjct: 251 GIALGLDRLVMLLTGSESIRDVIAFPKT 278
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. Length = 280 |
| >gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 7e-13
Identities = 103/478 (21%), Positives = 172/478 (35%), Gaps = 79/478 (16%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGL 79
NE L+ + + +AG + R+ TFI + D S +Q + D E + + L
Sbjct: 46 NEELEDKNIEVSIAGRIMARRSMGKATFITLQDES--GQIQLYVNKDDLPEDFYEFDEYL 103
Query: 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS-----DPSYPI--QKKRVSREFLR 132
+ G I + G P + ++ + V ++ ++ K+ D + + Q+ R + +L
Sbjct: 104 LDLGDIIGVTGY--PFKTKTGELSVHVTELQILTKALRPLPDKFHGLTDQETRYRQRYLD 161
Query: 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL 192
+ R TF VR+ + A +F + GFI + +P++ F
Sbjct: 162 LIVNPDSR-QTF----LVRSKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPF----- 211
Query: 193 IPSS---------REAAESP-----VDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHL 238
I R A E V K VY G FR E +T H
Sbjct: 212 ITHHNALDMDLYLRIAPELYLKRLIVGGFEK----------VYEIGRNFRNEGVDT-THN 260
Query: 239 AEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDFFNTWIEKGIIDR 293
EF MIE A+AD +D M +++ + +L K ++DF + +++
Sbjct: 261 PEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYGELEIDFKKPFKRITMVEA 320
Query: 294 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC------ 347
+ + E KK V L H + E F
Sbjct: 321 IKKYDMETGIDFDDLKDFETAKALAKKIGIEVA-EKSLTLGH---ILNELFEQFLEHTLI 376
Query: 348 -PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG--------SQREERLEYL 398
P ++ YP EI ++N L E+ QRE + +
Sbjct: 377 QPTFITHYPAEISPL-AKRNPSNPEFTDRFELFIAGKEIANAFSELNDPLDQRERFEQQV 435
Query: 399 EGRL---DELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
+ DE + + + L+ YG P G G+G +RLV T ++IRD I FP
Sbjct: 436 AEKEAGDDEAQFVDEDFVEALE---YGMPPTGGLGIGIDRLVMLLTDSKSIRDVILFP 490
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms [Protein synthesis, tRNA aminoacylation]. Length = 496 |
| >gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 67/269 (24%), Positives = 93/269 (34%), Gaps = 57/269 (21%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKED- 278
VY G FR E + H EF MIE A+AD D M +V+ I K +
Sbjct: 79 VYEIGRNFRNEGIDL-THNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKTKIEY 137
Query: 279 ----MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 334
+DF + ++D L DF +L EL K L+K +
Sbjct: 138 GGKELDFTPPFKRVTMVDALKEKTGIDFPELDLEQPEELA----KLLAKLIKEKIEKPRT 193
Query: 335 HERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIG 387
+ L ++ F P + D+P EI R + L R I
Sbjct: 194 LGKLL-DKLFEEFVEPTLIQPTFIIDHPVEISPLAKRHRSNPG-------LTERFELFIC 245
Query: 388 GS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDLRHYGSV 424
G QRE E + + +DE D ++ YG
Sbjct: 246 GKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDE-----D----FVTALEYGMP 296
Query: 425 PHAGFGLGFERLVQFATGVENIRDAIPFP 453
P G G+G +RLV T +IRD I FP
Sbjct: 297 PTGGLGIGIDRLVMLLTDSNSIRDVILFP 325
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 329 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 384 ELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 439
EL GGS R E + + L ++ R+ + + L+ YG+ PHAGF LG +RL+
Sbjct: 478 ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMML 537
Query: 440 ATGVENIRDAIPFPRT 455
TG +NIRD I FP+T
Sbjct: 538 LTGTDNIRDVIAFPKT 553
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 1e-08
Identities = 68/275 (24%), Positives = 102/275 (37%), Gaps = 73/275 (26%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 276
VY G FR E +T RH EF M+E A+AD D M ++++ + +L K
Sbjct: 243 VYEIGRNFRNEGIDT-RHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTKVTY 301
Query: 277 --EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 334
++DF + ++D + DF ++ +A L + + E G
Sbjct: 302 QGTEIDFGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLG------ 355
Query: 335 HERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPRIGE- 384
L E F P ++DYP EI A +++ + P + E
Sbjct: 356 ---KLINELFEEFVEPKLIQPTFITDYPVEISPLA---KRHRE----------DPGLTER 399
Query: 385 ---LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDL 418
IGG QRE +E + +DE D +L
Sbjct: 400 FELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDE-----D----FLRA 450
Query: 419 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
YG P G G+G +RLV T +IRD I FP
Sbjct: 451 LEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFP 485
|
Length = 491 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 421 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455
YG+ PH G G +RLV TG E+IRD I FP+T
Sbjct: 522 YGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKT 556
|
Length = 585 |
| >gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 1e-07
Identities = 101/470 (21%), Positives = 181/470 (38%), Gaps = 66/470 (14%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGL 79
N+ L+ + + + VAG + T R +F+ + D + S EG DQ K
Sbjct: 58 NQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKK-- 115
Query: 80 ITTGASIWIQGNVVPSQGS---KQKVELKVN--KIVLVGKSDPSYPI-------QKKRVS 127
W G+++ ++G+ Q EL ++ ++ L+ K+ P Q+ R
Sbjct: 116 -------WDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYR 168
Query: 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
+ +L A+ + R TF VR+ + A +F GF+ + +P++ + F
Sbjct: 169 QRYLDLIANDKSR-QTF----VVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPF 223
Query: 188 CVT-TLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEP 246
+ +P + + G + +V+ FR E + RH EF M+E
Sbjct: 224 ITHHNALDLDMYLRIAPELYLKRLVVG--GFERVFEINRNFRNEGISV-RHNPEFTMMEL 280
Query: 247 ELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDF---FNTWIEKGIIDRLSTVA 298
+A+AD D + + + + + +L K DF F + I +
Sbjct: 281 YMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYR--P 338
Query: 299 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE------EAFGGCPVIVS 352
E D L DA + L ++ WG R +TE EA P ++
Sbjct: 339 ETDMADLDNFDAAKALAESIG-ITVEKSWGLG------RIVTEIFDEVAEAHLIQPTFIT 391
Query: 353 DYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG-----SQREERLEYLEGRLDELKL 407
+YP E+ R + + + + G IG + E++ E + +++
Sbjct: 392 EYPAEVSPLARRNDVNPEITDRFEFFIG--GREIGNGFSELNDAEDQAERFQEQVNAKAA 449
Query: 408 NRDSYWWY----LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
D +Y + YG P AG G+G +R++ T IRD I FP
Sbjct: 450 GDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 499
|
Length = 505 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 6e-07
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 22/254 (8%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
+G + +AGWV R + FI++ D S + +Q V DA+ K + +
Sbjct: 14 LGQTVTLAGWVNRRRDLGGLIFIDLRDRSGI--VQVVCDPDADALKLAKG--LRNEDVVQ 69
Query: 88 IQGNVVP-SQGSKQ------KVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AHLRP 139
++G V +G+ ++E+ I L+ KS I +K + E +R K +L
Sbjct: 70 VKGKVSARPEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKTDAEEEVRLKYRYLDL 129
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS-RE 198
R ++R+ + A F + GF+ I +P++T S EGA + L+PS +
Sbjct: 130 RRPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGARD-----YLVPSRVHK 184
Query: 199 AAESPVDAIPKTKDGLIDWSQV---YTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKD 255
+ P+ L+ S V Y FR E+ R EF I+ E++F +D
Sbjct: 185 GEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQ-PEFTQIDMEMSFMTQED 243
Query: 256 DMACATAYLQYVVR 269
M + +V
Sbjct: 244 VMELIEKLVSHVFL 257
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 51.2 bits (124), Expect = 6e-07
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 421 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455
YG+ PH G G +RLV G ++IRD I FP+T
Sbjct: 524 YGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPKT 558
|
Length = 588 |
| >gnl|CDD|239818 cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-06
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWV LR+Q + F+ + DG+ +QCV++ L T +S+ + G
Sbjct: 2 VKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKSL-TQESSVEVTGE 58
Query: 92 VVPSQGSKQK---VELKVNKIVLVGK 114
V +KQ EL+V+ + ++G+
Sbjct: 59 VKEDPRAKQAPGGYELQVDYLEIIGE 84
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. AsnRS is immunodominant antigen of the filarial nematode B. malayai and of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 84 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 374 AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGF 429
A DM V E+ GGS R R + + L+ + L+ + + L+ G+ PH G
Sbjct: 537 AYDM-VYNGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGI 595
Query: 430 GLGFERLVQFATGVENIRDAIPFPRT 455
G +RLV G ++IRD I FP+T
Sbjct: 596 AYGLDRLVMLLAGAKSIRDVIAFPKT 621
|
Length = 652 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 15/167 (8%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGAS 85
VG + ++GWV R + FI++ D + +Q V + E ++ +
Sbjct: 14 VGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFV 69
Query: 86 IWIQGNVVP-SQGSKQ------KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTK-AH 136
I + G V +G+ ++E+ +I ++ S + I+ + + E +R K +
Sbjct: 70 IQVTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDETNASEEIRLKYRY 129
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
L R ++R+ + A F + GF+ I +PI+T S EGA
Sbjct: 130 LDLRRPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTPEGA 176
|
Length = 585 |
| >gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 76/267 (28%), Positives = 102/267 (38%), Gaps = 52/267 (19%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 276
VY G FR E +T RH EF E A+AD D M + +V+ + + K
Sbjct: 300 VYEIGRQFRNEGIST-RHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKY 358
Query: 277 --EDMDFFNTWIEKGIIDRLSTVAERDFVQ-LSYTDAIELLIKAKKKFEFLVKWGCDLQS 333
++DF + +I + DF L +A LI A +KF+ C
Sbjct: 359 HGIEIDFTPPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDV----KCPPPQ 414
Query: 334 EHERYLTE--EAFG--GC--PVIVSDYPKEIK--AFYMRQNDD----------GRTVA-A 374
R L E E F P V D+P E+ A R GR +A A
Sbjct: 415 TTGRLLNELFEEFLEETLVQPTFVLDHPVEMSPLAKPHRSKPGLTERFELFINGRELANA 474
Query: 375 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR--DSYWWYLD------LRHYGSVPH 426
L + QRE R E +++K + D LD L YG P
Sbjct: 475 FSELTDPV------DQRE-RFE------EQVKQHNAGDDEAMALDEDFCTALE-YGLPPT 520
Query: 427 AGFGLGFERLVQFATGVENIRDAIPFP 453
G+GLG +RLV T +IRD I FP
Sbjct: 521 GGWGLGIDRLVMLLTDSASIRDVIAFP 547
|
Length = 553 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 3e-04
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 23/170 (13%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R + FI++ D + +Q V DAE ++ +S + + I
Sbjct: 16 VGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQ 71
Query: 88 IQGNVVP-SQGSKQK------VELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAH--- 136
+ G V +G+ +E+ +++ ++ KS +PI + E LR K +
Sbjct: 72 VTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDVSEELRLK-YRYL 130
Query: 137 -LR-PR-TNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
LR P ++R+ + A F +NGF+ I +PI+T S EGA
Sbjct: 131 DLRRPEMQKNL----KLRSKVTSAIRNFLDDNGFLEIETPILTKSTPEGA 176
|
Length = 588 |
| >gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 8/111 (7%)
Query: 150 VRNALAYATHKFFQENGFIWISSPIIT-ASDCEGAGEQFCVTTLIPSSRE--AAESPVDA 206
+R+ + +F E GF + +PI+ E AG + + + E P
Sbjct: 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLE 60
Query: 207 IPKT---KDGLIDWSQ-VYTFGPTFRAENSNTS-RHLAEFWMIEPELAFAD 252
+ + GP FR E R + EF +E E+ D
Sbjct: 61 PGLVRLFVSHIRKLPLRLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGED 111
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. Length = 211 |
| >gnl|CDD|239815 cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.001
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 32 IVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTSDAEG-----YDQVKSGLITTGAS 85
+++ V T RAQ + + F+ + +Q V+ + AEG S ++ +
Sbjct: 2 VLIRARVHTSRAQGAKLAFLVLRQQG--YTIQGVLAASAEGVSKQMVKWAGS--LSKESI 57
Query: 86 IWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQ 122
+ ++G V + ++Q VEL + KI +V ++ P Q
Sbjct: 58 VDVEGTVKKPEEPIKSCTQQDVELHIEKIYVVSEAAEPLPFQ 99
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Length = 102 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 58/251 (23%), Positives = 109/251 (43%), Gaps = 35/251 (13%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R +TF++V D + + + + E + + +
Sbjct: 71 VGSRVTLCGWVDLHRDMGGLTFLDVRDHTGIVQVVTLPDEFPEAHRTANR--LRNEYVVA 128
Query: 88 IQGNVVPSQGSKQ--------KVELKVNKI-VL--VGKSDPSYPI----QKKRVSREFLR 132
++G V S+ + VE+ + +L V KS P + + ++K +E +R
Sbjct: 129 VEG-TVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLP-FLVTTADEQKDSIKEEVR 186
Query: 133 TK-AHLRPRTNTFGAVARVRNALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVT 190
+ L R A R+R+ + ++ ++ +GF+ I +PI++ S EGA +
Sbjct: 187 LRYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDY---- 242
Query: 191 TLIPSSREAAESPVDAIPKT----KDGLI--DWSQVYTFGPTFRAENSNTSRHLAEFWMI 244
L+PS + A+P++ K L+ + + Y FR E+ R EF +
Sbjct: 243 -LVPSRVQPGT--FYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQ-PEFTQL 298
Query: 245 EPELAFADLKD 255
+ ELAF L+D
Sbjct: 299 DMELAFTPLED 309
|
Length = 652 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 461 | |||
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 100.0 | |
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 100.0 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 100.0 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 100.0 | |
| PLN02532 | 633 | asparagine-tRNA synthetase | 100.0 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 100.0 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 100.0 | |
| KOG0554 | 446 | consensus Asparaginyl-tRNA synthetase (mitochondri | 100.0 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 100.0 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 100.0 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 100.0 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 100.0 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 100.0 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 100.0 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 100.0 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 100.0 | |
| KOG0556 | 533 | consensus Aspartyl-tRNA synthetase [Translation, r | 100.0 | |
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 100.0 | |
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 100.0 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 100.0 | |
| KOG1885 | 560 | consensus Lysyl-tRNA synthetase (class II) [Transl | 100.0 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 100.0 | |
| KOG0555 | 545 | consensus Asparaginyl-tRNA synthetase [Translation | 100.0 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 100.0 | |
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 100.0 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 100.0 | |
| KOG2411 | 628 | consensus Aspartyl-tRNA synthetase, mitochondrial | 100.0 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 100.0 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 100.0 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 100.0 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 100.0 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 100.0 | |
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetas | 100.0 | |
| cd04317 | 135 | EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod | 99.87 | |
| cd04319 | 103 | PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod | 99.84 | |
| cd04316 | 108 | ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a | 99.81 | |
| cd04322 | 108 | LysRS_N LysRS_N: N-terminal, anticodon recognition | 99.79 | |
| cd04318 | 82 | EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod | 99.74 | |
| cd04320 | 102 | AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r | 99.74 | |
| cd00645 | 309 | AsnA Asparagine synthetase (aspartate-ammonia liga | 99.72 | |
| cd04321 | 86 | ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a | 99.71 | |
| PTZ00213 | 348 | asparagine synthetase A; Provisional | 99.7 | |
| PRK05425 | 327 | asparagine synthetase AsnA; Provisional | 99.7 | |
| cd04323 | 84 | AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a | 99.69 | |
| cd04100 | 85 | Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant | 99.67 | |
| TIGR00669 | 330 | asnA aspartate--ammonia ligase, AsnA-type. The fac | 99.64 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.44 | |
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 99.33 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 99.3 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 99.3 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 99.27 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 99.26 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 99.12 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 99.06 | |
| COG2502 | 330 | AsnA Asparagine synthetase A [Amino acid transport | 99.01 | |
| PF01336 | 75 | tRNA_anti-codon: OB-fold nucleic acid binding doma | 98.98 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 98.87 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 98.82 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 98.8 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 98.61 | |
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 98.54 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 98.49 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 98.36 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 98.29 | |
| TIGR00469 | 460 | pheS_mito phenylalanyl-tRNA synthetase, mitochondr | 98.25 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 98.12 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 98.03 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 98.02 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 97.96 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 97.87 | |
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 97.85 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 97.81 | |
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 97.78 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 97.76 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.67 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 97.64 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.55 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 97.53 | |
| TIGR00408 | 472 | proS_fam_I prolyl-tRNA synthetase, family I. Proly | 97.52 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 97.5 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 97.5 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 97.48 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 97.47 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 97.46 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 97.45 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 97.45 | |
| PLN02530 | 487 | histidine-tRNA ligase | 97.44 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 97.43 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 97.43 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 97.41 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 97.39 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 97.39 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 97.39 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 97.37 | |
| PRK08661 | 477 | prolyl-tRNA synthetase; Provisional | 97.34 | |
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 97.26 | |
| PLN02678 | 448 | seryl-tRNA synthetase | 97.11 | |
| PLN02837 | 614 | threonine-tRNA ligase | 97.08 | |
| KOG2784 | 483 | consensus Phenylalanyl-tRNA synthetase, beta subun | 97.07 | |
| cd04487 | 73 | RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f | 97.0 | |
| cd04489 | 78 | ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol | 96.98 | |
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 96.98 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.96 | |
| PRK04173 | 456 | glycyl-tRNA synthetase; Provisional | 96.94 | |
| cd04478 | 95 | RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor | 96.83 | |
| cd04483 | 92 | hOBFC1_like hOBFC1_like: A subfamily of OB folds s | 96.53 | |
| PLN02320 | 502 | seryl-tRNA synthetase | 96.44 | |
| COG0423 | 558 | GRS1 Glycyl-tRNA synthetase (class II) [Translatio | 96.29 | |
| cd04482 | 91 | RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara | 96.25 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.2 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosoma | 96.1 | |
| PF10451 | 256 | Stn1: Telomere regulation protein Stn1; InterPro: | 96.06 | |
| PF13742 | 99 | tRNA_anti_2: OB-fold nucleic acid binding domain | 95.92 | |
| PRK14894 | 539 | glycyl-tRNA synthetase; Provisional | 95.47 | |
| cd03524 | 75 | RPA2_OBF_family RPA2_OBF_family: A family of oligo | 95.15 | |
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 95.05 | |
| PLN02734 | 684 | glycyl-tRNA synthetase | 94.95 | |
| COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal | 94.69 | |
| COG3111 | 128 | Periplasmic protein with OB-fold [Function unknown | 94.64 | |
| TIGR00389 | 551 | glyS_dimeric glycyl-tRNA synthetase, dimeric type. | 94.63 | |
| cd04490 | 79 | PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds | 94.5 | |
| cd04492 | 83 | YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol | 94.42 | |
| cd04485 | 84 | DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp | 94.37 | |
| PRK07373 | 449 | DNA polymerase III subunit alpha; Reviewed | 94.21 | |
| PF03590 | 244 | AsnA: Aspartate-ammonia ligase; InterPro: IPR00461 | 94.18 | |
| PRK00960 | 517 | seryl-tRNA synthetase; Provisional | 94.05 | |
| PF04076 | 103 | BOF: Bacterial OB fold (BOF) protein; InterPro: IP | 94.04 | |
| PF12869 | 144 | tRNA_anti-like: tRNA_anti-like; InterPro: IPR02442 | 93.96 | |
| TIGR00156 | 126 | conserved hypothetical protein TIGR00156. As of th | 93.73 | |
| COG4085 | 204 | Predicted RNA-binding protein, contains TRAM domai | 93.65 | |
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase, Methanococcus janna | 93.44 | |
| cd04479 | 101 | RPA3 RPA3: A subfamily of OB folds similar to huma | 93.35 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 93.25 | |
| PRK10053 | 130 | hypothetical protein; Provisional | 93.1 | |
| PRK15491 | 374 | replication factor A; Provisional | 92.74 | |
| KOG2324 | 457 | consensus Prolyl-tRNA synthetase [Translation, rib | 92.5 | |
| PRK14699 | 484 | replication factor A; Provisional | 92.22 | |
| COG5235 | 258 | RFA2 Single-stranded DNA-binding replication prote | 92.0 | |
| PF08661 | 109 | Rep_fac-A_3: Replication factor A protein 3; Inter | 91.96 | |
| PRK06826 | 1151 | dnaE DNA polymerase III DnaE; Reviewed | 91.96 | |
| PRK07374 | 1170 | dnaE DNA polymerase III subunit alpha; Validated | 91.91 | |
| PRK05672 | 1046 | dnaE2 error-prone DNA polymerase; Validated | 91.83 | |
| PRK06920 | 1107 | dnaE DNA polymerase III DnaE; Reviewed | 89.93 | |
| PRK05673 | 1135 | dnaE DNA polymerase III subunit alpha; Validated | 89.89 | |
| KOG2783 | 436 | consensus Phenylalanyl-tRNA synthetase [Translatio | 89.71 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 89.65 | |
| PRK06461 | 129 | single-stranded DNA-binding protein; Reviewed | 89.33 | |
| KOG1936 | 518 | consensus Histidyl-tRNA synthetase [Translation, r | 89.2 | |
| cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR | 88.84 | |
| PF03100 | 131 | CcmE: CcmE; InterPro: IPR004329 CcmE is the produc | 87.96 | |
| cd04474 | 104 | RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor | 87.47 | |
| COG3705 | 390 | HisZ ATP phosphoribosyltransferase involved in his | 87.31 | |
| COG2024 | 536 | Phenylalanyl-tRNA synthetase alpha subunit (archae | 87.19 | |
| PRK07279 | 1034 | dnaE DNA polymerase III DnaE; Reviewed | 87.01 | |
| cd04488 | 75 | RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f | 86.99 | |
| cd04484 | 82 | polC_OBF polC_OBF: A subfamily of OB folds corresp | 86.6 | |
| PRK13480 | 314 | 3'-5' exoribonuclease YhaM; Provisional | 86.41 | |
| PRK13150 | 159 | cytochrome c-type biogenesis protein CcmE; Reviewe | 86.12 | |
| PRK14699 | 484 | replication factor A; Provisional | 85.81 | |
| cd04491 | 82 | SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil | 85.07 | |
| PRK12366 | 637 | replication factor A; Reviewed | 84.78 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 84.68 | |
| PRK00286 | 438 | xseA exodeoxyribonuclease VII large subunit; Revie | 84.19 | |
| KOG3108 | 265 | consensus Single-stranded DNA-binding replication | 83.89 | |
| COG1570 | 440 | XseA Exonuclease VII, large subunit [DNA replicati | 83.87 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 83.7 | |
| PRK07217 | 311 | replication factor A; Reviewed | 82.95 | |
| PRK07211 | 485 | replication factor A; Reviewed | 82.81 | |
| PRK15491 | 374 | replication factor A; Provisional | 81.92 | |
| PRK13165 | 160 | cytochrome c-type biogenesis protein CcmE; Reviewe | 81.83 | |
| TIGR00237 | 432 | xseA exodeoxyribonuclease VII, large subunit. This | 81.28 | |
| COG1571 | 421 | Predicted DNA-binding protein containing a Zn-ribb | 81.26 | |
| PRK13254 | 148 | cytochrome c-type biogenesis protein CcmE; Reviewe | 80.88 | |
| COG3689 | 271 | Predicted membrane protein [Function unknown] | 80.65 | |
| PRK07218 | 423 | replication factor A; Provisional | 80.43 | |
| PF15072 | 86 | DUF4539: Domain of unknown function (DUF4539) | 80.2 |
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-110 Score=839.00 Aligned_cols=427 Identities=44% Similarity=0.743 Sum_probs=386.0
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhhhhhcCCCCCcEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V 86 (461)
.+++++|+.+. ..+++|+|+|||+++|.+|+++||.||||||. ||||++++. ..++ ++. |+.||+|
T Consensus 3 ~~~~i~di~~~------~~~~~V~v~GWV~~~R~~g~i~Fi~lrDgsg~--iQ~v~~~~~~~~~~~~-~~~--L~~es~v 71 (435)
T COG0017 3 KRTYIKDIKPH------VGGQEVTVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPKNKVYEELFK-AKK--LTLESSV 71 (435)
T ss_pred ceeeHHhhhcc------CCCcEEEEEEEeeeecccCCeEEEEEEcCCcE--EEEEEECCCCcHHHhh-hhc--CCCccEE
Confidence 46788888874 34499999999999999999999999999987 999998743 2355 677 9999999
Q ss_pred EEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCC-hhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhC
Q 012529 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS-REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (461)
Q Consensus 87 ~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~-~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~ 165 (461)
.|+|+|++++.++|++||++++|+|++.++++||++++.++ +++++++|||++|++..+++|++||.+++++|+||.++
T Consensus 72 ~V~G~v~~~~~a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~~ 151 (435)
T COG0017 72 VVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYEN 151 (435)
T ss_pred EEEEEEEcCCCCCCCEEEEEEEEEEeeccCCCCCcCcccccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999667999999986 99999999999999999999999999999999999999
Q ss_pred CcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccce
Q 012529 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIE 245 (461)
Q Consensus 166 gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE 245 (461)
||+||+||+|+++++||++++|.|+|++. .++|++|+.+ ++ ..+.+.++|||+|||+||||+|+|+|||+||||+|
T Consensus 152 gF~eV~tP~i~~~~~EGg~elF~v~yf~~-~a~LtqS~QL--yk-e~~~~al~rVf~igP~FRAE~s~T~RHL~EF~~ld 227 (435)
T COG0017 152 GFTEVHTPIITASATEGGGELFKVDYFDK-EAYLTQSPQL--YK-EALAAALERVFTIGPTFRAEKSNTRRHLSEFWMLD 227 (435)
T ss_pred CcEEecCceEeccCCCCCceeEEEeecCc-ceEEecCHHH--HH-HHHHHHhCceEEecCceecCCCCCcchhhhHheec
Confidence 99999999999999999999999999987 4677777532 21 22223499999999999999999999999999999
Q ss_pred eeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccc
Q 012529 246 PELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLV 325 (461)
Q Consensus 246 ~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~ 325 (461)
.||+|++++|+|+++|++|+++++.+++.|+++|++++.. .. .++.....||+||||+||+++|++.+.+. +
T Consensus 228 ~Emaf~~~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~~--~~---~l~~~~~~pf~ritY~eAieiL~~~~~e~---~ 299 (435)
T COG0017 228 PEMAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGRD--NS---ELKRPESAPFPRITYKEAIEILEEKGFEK---V 299 (435)
T ss_pred ceeccCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc--ch---hhcccccCCccEEEHHHHHHHHHhcCCcc---c
Confidence 9999999999999999999999999999999999887541 11 12211146899999999999999877643 7
Q ss_pred cccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCc-cceeccccccCCceeeechhhhcccHHHHHHHHHH
Q 012529 326 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE 404 (461)
Q Consensus 326 ~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~-~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~ 404 (461)
+||+||++++|++|.++++. .|+||||||.+++||||+.++|+ +++.+|||++||+|||+|||||+|+++.|.+++++
T Consensus 300 ~~GdDl~~e~Er~l~e~~~~-~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll~p~~gEIigGsqRe~~~d~L~~ri~~ 378 (435)
T COG0017 300 EWGDDLGTEHERYLGEEYFK-PPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDYDLLVERIKE 378 (435)
T ss_pred CCCCccCCHHHHHHHHHhCC-CcEEEEeCcccccccccccCCCCCCeEEEEeeecCCceeeecceeccccHHHHHHHHHH
Confidence 89999999999999988765 57999999999999999988776 78999999999988999999999999999999999
Q ss_pred cCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 405 LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 405 ~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
+|+++++|+|||++++||+|||||||||+|||+|++||++|||||+||||+++|+.
T Consensus 379 ~gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR~~~r~~ 434 (435)
T COG0017 379 KGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDPGRLY 434 (435)
T ss_pred cCCChHHhHHHHHHHHcCCCCCcccccCHHHHHHHHhCCCcceeccccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999986
|
|
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-109 Score=867.49 Aligned_cols=454 Identities=85% Similarity=1.332 Sum_probs=405.8
Q ss_pred CccccceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCc
Q 012529 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~ 84 (461)
.+++..+++|+++....+.+....|++|+|+|||+++|.+|+++|++|+||++..+||||++++...++.+..+.|+.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g~~~Fi~l~Dgs~~~~lQ~v~~~~~~~~~~l~~~~l~~gs 162 (565)
T PLN02603 83 VGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTPDAEGYDQVESGLITTGA 162 (565)
T ss_pred ccccCCceEhhhcccccccccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCCEeEEEEEECcHHHHHHHhhcCCCCCC
Confidence 45666778999998433334567899999999999999999999999999998778999998776566665433499999
Q ss_pred EEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 012529 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (461)
Q Consensus 85 ~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~ 164 (461)
+|.|+|+++++++++|.+||++++++|||+|++++|+++++++.+++|.++|||+|++.+++++|+||++++++|+||++
T Consensus 163 ~V~V~G~v~~~~~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~~ 242 (565)
T PLN02603 163 SVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 242 (565)
T ss_pred EEEEEEEEEecCCCCccEEEEEeEEEEEECCCCCCCCcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888999999999999998789999988999999999999999999999999999999999999999
Q ss_pred CCcEEEecceeecCCCCCCCcceeeeecCCCc-----------------------------ccccCCccccCCCccccCc
Q 012529 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSS-----------------------------REAAESPVDAIPKTKDGLI 215 (461)
Q Consensus 165 ~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~-----------------------------~~~~~s~~~~l~~~~~~~~ 215 (461)
+||+||+||+|++++||||++.|.|++..... .+|..|+.+. +.....
T Consensus 243 ~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~---~E~~~~ 319 (565)
T PLN02603 243 NGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLN---GETYAT 319 (565)
T ss_pred CCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHH---HHHHHh
Confidence 99999999999999999999999987643111 1111111000 011234
Q ss_pred CcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhh
Q 012529 216 DWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLS 295 (461)
Q Consensus 216 ~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 295 (461)
+++|||+||||||||+++|+|||+||||||+||+|.|++|+|+++|++|+++++.+++++.+++++++++.+.++.+.++
T Consensus 320 ~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~ 399 (565)
T PLN02603 320 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLS 399 (565)
T ss_pred cccceEEEecceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999988887778888888
Q ss_pred hhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceecc
Q 012529 296 TVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAM 375 (461)
Q Consensus 296 ~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~f 375 (461)
+.++.||++|||+||+++|++.+.+++..++||.+|+.++|++|++.+++++||||+|||.+++||||+.++|++++++|
T Consensus 400 ~~~~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~~d~~~v~~f 479 (565)
T PLN02603 400 DVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAM 479 (565)
T ss_pred HhcCCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccCCCCCeeEEE
Confidence 88888999999999999999887666666789999999999999987765479999999999999999888888899999
Q ss_pred ccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCC
Q 012529 376 DMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455 (461)
Q Consensus 376 dl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~ 455 (461)
||++||+|||+||+||+|+++++.++++++|+++++|+|||++++||+|||||||||||||+|++||.+|||||++|||+
T Consensus 480 DLl~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~~nIRdvi~FPR~ 559 (565)
T PLN02603 480 DMLVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRV 559 (565)
T ss_pred EEEecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhCCCchhheeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 012529 456 PGSVEF 461 (461)
Q Consensus 456 ~~~~~~ 461 (461)
+++|+|
T Consensus 560 ~g~~~~ 565 (565)
T PLN02603 560 PGSAEF 565 (565)
T ss_pred CCCCCC
Confidence 999986
|
|
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-104 Score=829.82 Aligned_cols=431 Identities=50% Similarity=0.897 Sum_probs=378.6
Q ss_pred CCCCCCEEEEEEEEeeeecCC--CeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCC----
Q 012529 25 LDRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS---- 98 (461)
Q Consensus 25 ~~~~~~~v~v~G~v~~~R~~~--~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~---- 98 (461)
....|++|+|+|||+++|.+| +++|++||||||...+|||++++...+..+++ |+.|++|.|+|+|+.++.+
T Consensus 77 ~~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~~~~~~l~~--l~~gs~v~v~G~v~~~~~~~~n~ 154 (586)
T PTZ00425 77 NKYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLK--CGVGCCFRFTGKLIISPVQNENK 154 (586)
T ss_pred cccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCchHHHHHHhc--CCCccEEEEEEEEEcCCccccCc
Confidence 356799999999999999997 49999999999877899999765445666777 9999999999999887543
Q ss_pred ----CccEEEEE-----eEEEEeccCC-C-CCCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCc
Q 012529 99 ----KQKVELKV-----NKIVLVGKSD-P-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF 167 (461)
Q Consensus 99 ----~~~~el~~-----~~i~vl~~~~-~-~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF 167 (461)
++++||.+ ++++|||++. + +||++++.++.+++|++||||+|++.++++||+||++..++|+||.++||
T Consensus 155 ~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~~avlRiRs~l~~a~r~ff~~~gF 234 (586)
T PTZ00425 155 KGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGF 234 (586)
T ss_pred CCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 35699998 6999999983 3 49999988999999999999999999999999999999999999999999
Q ss_pred EEEecceeecCCCCCCCcceeeeecCCC----------------------------------------------------
Q 012529 168 IWISSPIITASDCEGAGEQFCVTTLIPS---------------------------------------------------- 195 (461)
Q Consensus 168 ~EV~TPiL~~~~~eg~~~~F~v~~~~~~---------------------------------------------------- 195 (461)
+||+||+|++++||||++.|.|+.....
T Consensus 235 ~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 314 (586)
T PTZ00425 235 LYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYL 314 (586)
T ss_pred EEeeCCeecccCCCCCcceEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999653110
Q ss_pred ----------cccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHH
Q 012529 196 ----------SREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQ 265 (461)
Q Consensus 196 ----------~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~ 265 (461)
..+|+.|+.+ + +..+.++++|||+||||||||+++|+||||||||||+||+|.|++++|+++|++|+
T Consensus 315 ~~~~~~yF~k~ayL~~S~QL--y-lE~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~ 391 (586)
T PTZ00425 315 IDYKKDFFSKQAFLTVSGQL--S-LENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIK 391 (586)
T ss_pred ccccccccCcceEEEcCchH--H-HHHHHhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHH
Confidence 0111111110 0 01123469999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhhhccc
Q 012529 266 YVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFG 345 (461)
Q Consensus 266 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~ 345 (461)
++++.+++.+.++|.+++.....++.+.|+..++.||++|||+||+++|++.+..+...+.||.+|..++|++|.+.+++
T Consensus 392 ~v~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~~~~~~~G~dL~~e~Er~L~~~~~~ 471 (586)
T PTZ00425 392 YCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSFEVPVKWGMDLQSEHERFVAEQIFK 471 (586)
T ss_pred HHHHHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhcCCCCCcccccchHHHHHHHHHhcC
Confidence 99999999888888876544444566777777778999999999999999876544445789999999999999986555
Q ss_pred CCCeeeeeCCccCCccccccCCCccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCC
Q 012529 346 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVP 425 (461)
Q Consensus 346 ~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP 425 (461)
.|+||+|||.+++||||+.++|++++++|||++||+|||++|++|+|+++.+.+++++.|+++++|+|||++++||+||
T Consensus 472 -~PvFItdyP~~~kPFY~~~~~d~~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ike~gl~~e~~~wYLd~rryG~pP 550 (586)
T PTZ00425 472 -KPVIVYNYPKDLKAFYMKLNEDQKTVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHP 550 (586)
T ss_pred -CcEEEECCccccCccccCcCCCCCeEEEEeEEccCceEEccCCCccccHHHHHHHHHHcCCChhHHHHHHHHhhCCCCC
Confidence 7999999999999999988887788999999999989999999999999999999999999999999999999999999
Q ss_pred CccccccHHHHHHHHcCCCCccccccCCCCCCCCCC
Q 012529 426 HAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461 (461)
Q Consensus 426 ~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~~ 461 (461)
|||||||||||+|++||.+|||||++|||++++|++
T Consensus 551 hgGfGLGiERLvm~ltGl~nIRDvi~FPR~~g~~~~ 586 (586)
T PTZ00425 551 HAGFGLGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586 (586)
T ss_pred CceEEEcHHHHHHHHcCCCchheEEECcCCCCcCCC
Confidence 999999999999999999999999999999999975
|
|
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-104 Score=831.54 Aligned_cols=449 Identities=53% Similarity=0.906 Sum_probs=389.2
Q ss_pred CccccceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCC--eEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCC
Q 012529 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~--~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~ 82 (461)
-++|..+.+|++|+...+++..+.|++|+|+|||+++|.+|+ ++||+|||+|+.+.||||++++... ..+. |+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~~--~~~~--L~~ 101 (572)
T PLN02221 26 KAQFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLYD--LSTL--VAT 101 (572)
T ss_pred cccccCceEHHHHhccccCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchhh--HHhc--CCC
Confidence 456777889999986555567789999999999999999985 8999999999655699999865322 2235 999
Q ss_pred CcEEEEEeeEeecCC---CCccEEEEEeEEEEeccCCC-CCCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHH
Q 012529 83 GASIWIQGNVVPSQG---SKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (461)
Q Consensus 83 g~~V~v~G~~~~~~~---~~~~~el~~~~i~vl~~~~~-~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~i 158 (461)
||+|.|+|+|++++. .++++||++++++|||+|.+ ++|++.+.++.+++|+++|||+|++.++++||+||.+.+++
T Consensus 102 ES~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~ai 181 (572)
T PLN02221 102 GTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFAT 181 (572)
T ss_pred ceEEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999998764 45689999999999999974 59999888899999999999999999999999999999999
Q ss_pred HHHhhhCCcEEEecceeecCCCCCCCcceeeeecCC--------------------------------------------
Q 012529 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP-------------------------------------------- 194 (461)
Q Consensus 159 R~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~-------------------------------------------- 194 (461)
|+||.++||+||+||+|++++||||++.|.|+....
T Consensus 182 R~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (572)
T PLN02221 182 HSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASK 261 (572)
T ss_pred HHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccch
Confidence 999999999999999999999999999999854320
Q ss_pred ---------------------------------------------CcccccCCccccCCCccccCcCcceeEEEeccccc
Q 012529 195 ---------------------------------------------SSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRA 229 (461)
Q Consensus 195 ---------------------------------------------~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~ 229 (461)
..++|++|+.+. +..+.++++|||+|||||||
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy---~e~~~~~l~rVfeIgP~FRA 338 (572)
T PLN02221 262 EEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQ---VETYACALSSVYTFGPTFRA 338 (572)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHH---HHHHHHhcCCeEEEccceec
Confidence 012222332111 01123469999999999999
Q ss_pred CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHH
Q 012529 230 ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD 309 (461)
Q Consensus 230 E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~e 309 (461)
|+++|+||||||||||+||+|.|++|+|+++|+||+++++.+.+.+.++++++......+.++.|+..++.||+||||.|
T Consensus 339 E~s~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~E 418 (572)
T PLN02221 339 ENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTE 418 (572)
T ss_pred CCCCCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHH
Confidence 99999999999999999999999999999999999999999999988888776543333445666666678999999999
Q ss_pred HHHHHHHh---cccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceeccccccCCceeee
Q 012529 310 AIELLIKA---KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELI 386 (461)
Q Consensus 310 a~~~l~~~---~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~ 386 (461)
|+++|++. |.+++..+.||.+++.++|++|.+.++. +|+||+|||.+++||||+.++|+..+++||||++|+|||+
T Consensus 419 Ai~~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~~~-~pvfv~dyP~~~~pfy~~~~~d~~~~~~fDLl~~g~~El~ 497 (572)
T PLN02221 419 AIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQ-KPLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELI 497 (572)
T ss_pred HHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhcC-CcEEEEcCChhhCcccccCCCCCceEEEEEEecCCceEEC
Confidence 99999885 4444445689999999999999886555 7999999999999999887777778899999999999999
Q ss_pred chhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCCC
Q 012529 387 GGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461 (461)
Q Consensus 387 ~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~~ 461 (461)
+|++|+|+++.+.++++++|++++.|+|||+|++||+|||||||||||||+|++||.+|||||++|||++++|++
T Consensus 498 ~g~~R~~r~e~l~~~~~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdvi~FPR~~~~~~~ 572 (572)
T PLN02221 498 GGSQREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGKADL 572 (572)
T ss_pred CHHHHHHHHHHHHHHHHHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheEeecCCCcCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999974
|
|
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-104 Score=831.86 Aligned_cols=449 Identities=43% Similarity=0.802 Sum_probs=395.3
Q ss_pred CccccceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecC----------------------------------------
Q 012529 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQ---------------------------------------- 44 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~---------------------------------------- 44 (461)
..+|++|..++.|+...+++...+|++|.|.|||++.+..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (633)
T PLN02532 23 PSKYSNRVVLKTILGRSDGGAGLVGKRVVVGGWVKSAKEVKKEPAPPPPPQSPSSAGDQSPGHKDVRCTEILQSRVPIFR 102 (633)
T ss_pred chhccceeeeeeecccCCCccccccceEEecceehhhHHhhcCCCCCCCCCCCCCCCCCCCCcCCcchhHHHhhhcHHHH
Confidence 5689999999999999999999999999999999876442
Q ss_pred ------------------------------CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEee
Q 012529 45 ------------------------------SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP 94 (461)
Q Consensus 45 ------------------------------~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~ 94 (461)
|+++||+||||||.++||||++++...+. +. |+.|++|.|+|+|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~g~i~FI~LrDGSg~~~lQvVv~~~~~~~~--~~--L~~Es~V~V~G~V~~ 178 (633)
T PLN02532 103 SIAKVLSGGGSTYPVREKTEIAIQKSAPPPPSVAYLLISDGSCVASLQVVVDSALAPLT--QL--MATGTCILAEGVLKL 178 (633)
T ss_pred HHHHHHcCCCCCCCcccccccccccccccCCCcEEEEEECCCCccceEEEEeCCcccHh--hc--CCCceEEEEEEEEEe
Confidence 38999999999998889999987654332 45 999999999999998
Q ss_pred cCC--CCccEEEEEeEEEEeccCCC-CCCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEe
Q 012529 95 SQG--SKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWIS 171 (461)
Q Consensus 95 ~~~--~~~~~el~~~~i~vl~~~~~-~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~ 171 (461)
++. .++++||.+++++|||++.. +||++++.++++++|++||||+|++.++++||+||++++++|+||.++||+||+
T Consensus 179 ~~~~~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~ 258 (633)
T PLN02532 179 PLPAQGKHVIELEVEKILHIGTVDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQ 258 (633)
T ss_pred cCCCCCCCcEEEEeeEEEEEecCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEee
Confidence 833 36789999999999999864 599998888999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCCCCcceeeeecCCC--------------------------------------------------------
Q 012529 172 SPIITASDCEGAGEQFCVTTLIPS-------------------------------------------------------- 195 (461)
Q Consensus 172 TPiL~~~~~eg~~~~F~v~~~~~~-------------------------------------------------------- 195 (461)
||+|++++||||++.|.|+.....
T Consensus 259 TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (633)
T PLN02532 259 VPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTN 338 (633)
T ss_pred CCeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 999999999999999988753210
Q ss_pred --------------------------------cccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCcccccc
Q 012529 196 --------------------------------SREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWM 243 (461)
Q Consensus 196 --------------------------------~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtm 243 (461)
.++|++|+.+. +..+.++|+|||+||||||||+++|+||||||||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLy---lE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtm 415 (633)
T PLN02532 339 QLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLH---LESYACALGNVYTFGPRFRADRIDSARHLAEMWM 415 (633)
T ss_pred cccccccccccccccccccccccccccccCCCCeeeccCHHHH---HHHHHHhcCceEEEccceecCCCCCCcccccccc
Confidence 01111111100 0112347999999999999999999999999999
Q ss_pred ceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhc-cccc
Q 012529 244 IEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKFE 322 (461)
Q Consensus 244 lE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~-~~~~ 322 (461)
||+||+|.||+|+|+++|+||+++++.+++++.+++++++...+....+.|+..+..||+||||.||+++|++.+ .+++
T Consensus 416 lE~Emaf~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e 495 (633)
T PLN02532 416 VEVEMAFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFE 495 (633)
T ss_pred eeeeehhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999998899887654444455666666778999999999999998763 3455
Q ss_pred ccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceeccccccCCceeeechhhhcccHHHHHHHH
Q 012529 323 FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRL 402 (461)
Q Consensus 323 ~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~ 402 (461)
..++||.||..++|++|++.+++ .|+||+|||.+++||||+.++|++++++|||+++|+|||++|++|+|+++.+.+++
T Consensus 496 ~~~~~g~dL~~e~Er~L~~~~~~-~PvFVtdyP~~ikPFY~~~~~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~~ 574 (633)
T PLN02532 496 TKPEWGIALTTEHLSYLADEIYK-KPVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEERMDILNARI 574 (633)
T ss_pred cccccCCccChHHHHHHHHHHcC-CCEEEECCChhhchhhCCcCCCCCceEEEEEecCCCeEEeeCcEeHHHHHHHHHHH
Confidence 55789999999999999997665 89999999999999999988888899999999999899999999999999999999
Q ss_pred HHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCCC
Q 012529 403 DELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461 (461)
Q Consensus 403 ~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~~ 461 (461)
++.|+++++|+|||++++||+|||||||||||||+||+||.+|||||++|||++++|+.
T Consensus 575 ke~Gld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDvi~FPR~~g~~~~ 633 (633)
T PLN02532 575 EELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPRSWGKANN 633 (633)
T ss_pred HHcCCChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheEeecCCCcCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999974
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-104 Score=817.61 Aligned_cols=429 Identities=54% Similarity=0.936 Sum_probs=386.1
Q ss_pred CCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC--cchhhhhhcCCCCCcEEEEEeeEeecCCCCccEE
Q 012529 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (461)
Q Consensus 26 ~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~e 103 (461)
.+.|++|+|+|||+++|.+|+++|++|||+++.+.||||++++. ..+..++. |+.||+|.|+|++.+++..++++|
T Consensus 13 ~~~g~~v~v~Gwv~~~R~~~~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~--l~~gs~V~v~G~v~~~~~~~~~~E 90 (453)
T TIGR00457 13 KFVGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKS--LTTGSSVSVTGKVVESPGKGQPVE 90 (453)
T ss_pred hcCCCEEEEEEEeEEEEcCCCeEEEEEECCCCCccEEEEEeCCcChHHHHHHHc--CCCCcEEEEEEEEEcCCCCCCCEE
Confidence 46799999999999999999999999999994446999998763 22445666 999999999999999877778999
Q ss_pred EEEeEEEEeccCC-CCCCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCC
Q 012529 104 LKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182 (461)
Q Consensus 104 l~~~~i~vl~~~~-~~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg 182 (461)
|.+++++|||+|. .++|++.+++++++++++||||+|++.++++|++||.|++++|+||.++||+||+||+|+.++|||
T Consensus 91 l~~~~i~vl~~~~~~~~P~~~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~eg 170 (453)
T TIGR00457 91 LQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEG 170 (453)
T ss_pred EEEeEEEEEecCCccCCCCCccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCCCC
Confidence 9999999999997 359999888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeee---------ecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCCH
Q 012529 183 AGEQFCVT---------TLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL 253 (461)
Q Consensus 183 ~~~~F~v~---------~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~ 253 (461)
++++|.|+ |++. ..+|++||.+.+.. +.+|++||||||||||||+++|+|||||||||||||+|.|+
T Consensus 171 ~~~~F~v~~~~~~~~~~~~~~-~~yL~~Spql~lq~---l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~~ 246 (453)
T TIGR00457 171 AGELFRVSTDGIDFSQDFFGK-EAYLTVSGQLYLET---YALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANL 246 (453)
T ss_pred CCCceEecccccccchhccCC-ccccccCHHHHHHH---HhhcccCceEeeeccccCCCCCCcCcchhccceeeeecCCH
Confidence 99999987 5554 46677887544332 23479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCCh
Q 012529 254 KDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 333 (461)
Q Consensus 254 ~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~ 333 (461)
+|+|+++|++++++++.+.+.++.+++.+.......+...+++.++.+|+++||+||+++|++.+..++....||.+|+.
T Consensus 247 ~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea~~~l~~~~~~~~~~~~~g~~l~~ 326 (453)
T TIGR00457 247 NDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKESDKNFEYEDFWGDDLQT 326 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHHHHHHHHhcCCCCcCCCCCCCCCCc
Confidence 99999999999999999998888777776655555566777778889999999999999999987655555679999999
Q ss_pred HhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHH
Q 012529 334 EHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW 413 (461)
Q Consensus 334 ~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~ 413 (461)
++|++|++.++. .|+||||||.+++|||++.++++++++||||+++|+|||+|||+|+|+++++.+++++.|++++.|+
T Consensus 327 ~~e~~L~~~~~~-~p~fIt~~P~~~~pfy~~~~~~~~~~~~fDL~~~g~gEi~~gsere~~~~~l~~~~~~~g~d~~~~~ 405 (453)
T TIGR00457 327 EHERFLAEEYFK-PPVFVTNYPKDIKAFYMKLNDDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDALN 405 (453)
T ss_pred HHHHHHHHHhCC-CCEEEECCCcccChhhcccCCCcCceeeeeeccCCceEEeehhccCCCHHHHHHHHHHcCCCHHHHH
Confidence 999999988765 7999999999999999877777789999999999989999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCCC
Q 012529 414 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461 (461)
Q Consensus 414 ~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~~ 461 (461)
|||++++||+|||||||||||||+|++||++|||||++|||+++||..
T Consensus 406 ~Yl~~~~~G~pPhgG~GiGieRlvm~l~g~~~Irdv~~FPr~~~~~~p 453 (453)
T TIGR00457 406 WYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGNINF 453 (453)
T ss_pred HHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCCC
Confidence 999999999999999999999999999999999999999999999963
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-102 Score=809.85 Aligned_cols=436 Identities=58% Similarity=0.995 Sum_probs=391.7
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC--cchhhhhhcCCCCCcEEEE
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWI 88 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~v 88 (461)
+..++++... .+.|++|+|+|||+++|.+|+++|++|||++|. +|+++..+. ..++.++. |+.||+|.|
T Consensus 3 ~~~~~~~~~~-----~~~~~~V~i~G~v~~~R~~g~~~Fi~lrD~~g~--iq~~~~~~~~~~~~~~~~~--l~~~s~v~v 73 (450)
T PRK03932 3 RVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCF--KQLQVVKDNGEEYFEEIKK--LTTGSSVIV 73 (450)
T ss_pred cEEHHHhccc-----ccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCc--EEEEEEcCCChHHHHHHhc--CCCCcEEEE
Confidence 3457777532 478999999999999999999999999999975 888776543 34666777 999999999
Q ss_pred EeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcE
Q 012529 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFI 168 (461)
Q Consensus 89 ~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~ 168 (461)
+|++.+++++++++||++++++|||+|...+|++.+++++++++++||||+|++.++++|++||.|++++|+||.++||+
T Consensus 74 ~G~v~~~~~~~~~~el~~~~i~vl~~~~~~~p~~~~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~gf~ 153 (450)
T PRK03932 74 TGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFV 153 (450)
T ss_pred EEEEEcCCCCCCCEEEEEEEEEEccCCCCCCCCCccccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 99999998877899999999999999876799999989999999999999999999999999999999999999999999
Q ss_pred EEecceeecCCCCCCCcceee---------eecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCcc
Q 012529 169 WISSPIITASDCEGAGEQFCV---------TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLA 239 (461)
Q Consensus 169 EV~TPiL~~~~~eg~~~~F~v---------~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~ 239 (461)
||+||+|++++|||++++|.| +|++. ..+|++||.+.+. +. .+|++||||||||||||+++|+||||
T Consensus 154 EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~-~~~L~~Spql~lq-~l--~~g~~rVf~i~~~FR~E~~~t~rHl~ 229 (450)
T PRK03932 154 WVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGK-EAYLTVSGQLYAE-AY--AMALGKVYTFGPTFRAENSNTRRHLA 229 (450)
T ss_pred EecCCceeccCCCCCCCceEeecccccccccccCC-CcccccCHHHHHH-HH--HhccCCeEEeeeccccCCCCCccccc
Confidence 999999999999999999998 56654 4678888765542 22 23699999999999999999999999
Q ss_pred ccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcc
Q 012529 240 EFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKK 319 (461)
Q Consensus 240 EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~ 319 (461)
||||||||++|.|++++|+++|++|+++++.+.+.+.+++++++.+.+.+..+.++.+++.||++|||.||+++|++.+.
T Consensus 230 EFt~lE~e~~~~~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~rity~eA~~~l~~~~~ 309 (450)
T PRK03932 230 EFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQKSGK 309 (450)
T ss_pred cccccceEEeccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceEeEHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999988888888887766666666666656789999999999999998877
Q ss_pred cccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceeccccccCCceeeechhhhcccHHHHH
Q 012529 320 KFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE 399 (461)
Q Consensus 320 ~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~ 399 (461)
+++....||.+++..+|++|.+++++ .|+||+|||.+++|||++.++++++++||||++||+|||++|++|+|+++.+.
T Consensus 310 ~~~~~~~~g~~l~~~~e~~l~~~~~~-~pvfI~~yP~~~~pfy~~~~~~~~~~~~fdLl~~g~~El~~g~~r~~~~~~l~ 388 (450)
T PRK03932 310 KFEFPVEWGDDLGSEHERYLAEEHFK-KPVFVTNYPKDIKAFYMRLNPDGKTVAAMDLLAPGIGEIIGGSQREERLDVLE 388 (450)
T ss_pred CcCCCCCcccccChHHHHHHHHHhcC-CcEEEECCCcccCcccCcCCCCCCEEEEEEEEcCCCceeCCHHHHhhhHHHHH
Confidence 66555689999999999999885555 79999999999999998776655889999999999999999999999999999
Q ss_pred HHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 400 GRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 400 ~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
++++++|+++++++||+++++||+|||||||||||||+|++||.+|||||++|||+++||.
T Consensus 389 ~~~~~~g~~~~~~~~yl~~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~~~r~~ 449 (450)
T PRK03932 389 ARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGRAE 449 (450)
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999986
|
|
| >KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-102 Score=752.20 Aligned_cols=426 Identities=56% Similarity=0.942 Sum_probs=388.1
Q ss_pred CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEE
Q 012529 24 GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (461)
Q Consensus 24 ~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~e 103 (461)
+....|+++.|.|||+++|.+|+++|++|+|||+.++||||++++ +.+. +..|++|.|+|.+.-++.++|++|
T Consensus 15 ~~~~~g~~~~i~GWvKsvr~~~~~~Fl~i~DGs~~~~lQvVv~~~-----~~q~--la~Gt~i~~~g~l~~~~~~~q~ie 87 (446)
T KOG0554|consen 15 GHPRAGDTISIGGWVKSVRKLKKVTFLDINDGSCPSPLQVVVDSE-----QSQL--LATGTCISAEGVLKVSKGAKQQIE 87 (446)
T ss_pred cCCCCCCceeecchhhhcccccceEEEEecCCCCCcceEEEechH-----Hhhh--ccccceEEEEeeEEeccchheeee
Confidence 345789999999999999999999999999999999999999983 2345 999999999999999887889999
Q ss_pred EEEeEEEEeccCCCCCCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCC
Q 012529 104 LKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183 (461)
Q Consensus 104 l~~~~i~vl~~~~~~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~ 183 (461)
+.+++|.++|.++++||++++.++++++|+..|||.|++...+++|+||.+..++|+||++++|++|+||+|+.++|||+
T Consensus 88 l~~eki~~vG~v~~~ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCEGa 167 (446)
T KOG0554|consen 88 LNAEKIKVVGTVDESYPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCEGA 167 (446)
T ss_pred eeeeEEEEEeecCCCCCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCCCC
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeecCCCcccccCCcc-ccC---CCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCC-HHHHHH
Q 012529 184 GEQFCVTTLIPSSREAAESPV-DAI---PKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMA 258 (461)
Q Consensus 184 ~~~F~v~~~~~~~~~~~~s~~-~~l---~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d-~~dlm~ 258 (461)
+++|.|+.....+...-..|. +.. ..+.+++.+++|||++||+||||+|+++|||+||||+|.|+||++ ++|+|+
T Consensus 168 GE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~sl~d~m~ 247 (446)
T KOG0554|consen 168 GEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEAMACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAESLDDLMS 247 (446)
T ss_pred cceEEEEecCcccccccCCceEEEEeceehHHHHHhhhcceEeeccceecccCCchhHHhhhhhhhhHHHHHHHHHHHHH
Confidence 999999865431111111111 000 012234456899999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhc-ccccccccccccCChHhhh
Q 012529 259 CATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKFEFLVKWGCDLQSEHER 337 (461)
Q Consensus 259 ~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~-~~~~~~~~~g~~l~~~~e~ 337 (461)
++|.+++++++.++++|.+++++..++..++.+.+|+.....+|.++||+||+++|++.. ..++.+++||.+|++++|+
T Consensus 248 ~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~t~~fk~~~kwG~~l~~ehe~ 327 (446)
T KOG0554|consen 248 CAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAVTKKFKTPPKWGIDLSTEHEK 327 (446)
T ss_pred HHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhcccccccCcccccccchhhHH
Confidence 999999999999999999999998888888888999888888999999999999999987 6777889999999999999
Q ss_pred chhhhcccCCCeeeeeCCccCCccccccCCCccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHH
Q 012529 338 YLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 417 (461)
Q Consensus 338 ~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~ 417 (461)
+|++.+++ .||||+|||..++||||+.++|++++.+|||++||||||+|||+||.+ .+++++.|..+++|+||||
T Consensus 328 yL~~~~~~-~PVfV~dYP~~iKpFYMr~n~~~~tVaa~DlLVP~vGEliGGSlREe~----~~~l~e~g~~~~~~eWYld 402 (446)
T KOG0554|consen 328 YLVEECFK-KPVFVTDYPKGIKPFYMRLNDDGKTVAAFDLLVPGVGELIGGSLREER----KARLKERGLTREELEWYLD 402 (446)
T ss_pred HHHHHhcC-CCEEEEeccccccceEEEecCCCCeeEEEEeecccchhhcCcccchhh----HHHHHhcCCCccccceehh
Confidence 99998886 899999999999999999999888999999999999999999999988 5678899999999999999
Q ss_pred HhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCCC
Q 012529 418 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 461 (461)
Q Consensus 418 a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~~ 461 (461)
+++||.+||||||||+||++.+++|.+||||||||||.++.++.
T Consensus 403 LRryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~~s~~~ 446 (446)
T KOG0554|consen 403 LRRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYPGSAEL 446 (446)
T ss_pred hhhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCcccccC
Confidence 99999999999999999999999999999999999999999863
|
|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-99 Score=776.95 Aligned_cols=419 Identities=28% Similarity=0.453 Sum_probs=368.8
Q ss_pred eeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhhhhhcCCCCCcEEEEE
Q 012529 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~v~ 89 (461)
.+++|... +.|++|+|+|||+++|.+|+++|++|||++|. ||||++.+. ..++.++. |+.||+|.|+
T Consensus 2 ~~~~l~~~------~~g~~v~i~G~v~~~R~~g~~~Fi~lrd~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~s~v~v~ 71 (428)
T TIGR00458 2 YSADIKPE------MDGQEVTFMGWVHEIRDLGGLIFVLLRDREGL--IQITAPAKKVSKNLFKWAKK--LNLESVVAVR 71 (428)
T ss_pred chhhCchh------hCCCEEEEEEEEEEEecCCCcEEEEEEeCCee--EEEEEECCcCCHHHHHHHhC--CCCCcEEEEE
Confidence 45666543 67899999999999999999999999999974 999998653 23555666 9999999999
Q ss_pred eeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccC---ChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCC
Q 012529 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (461)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~---~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~g 166 (461)
|+++.+++..+++||.+++++|||+|..++|++.++. +.+...++||||+|++.++++|++||++++++|+||.++|
T Consensus 72 G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~g 151 (428)
T TIGR00458 72 GIVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEG 151 (428)
T ss_pred EEEEecCCCCCcEEEEEeEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999887766789999999999999987789877643 5566679999999999999999999999999999999999
Q ss_pred cEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCcccccccee
Q 012529 167 FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEP 246 (461)
Q Consensus 167 F~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~ 246 (461)
|+||+||+|+++++||++++|.++|++. ..+|++||.+.+..+.+ +|++||||||||||||+++|.|||||||||||
T Consensus 152 f~EV~TP~L~~~~~eg~~~~f~v~~~~~-~~yL~~Spql~~q~li~--~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~ 228 (428)
T TIGR00458 152 FIEVHTPKLVASATEGGTELFPITYFER-EAFLGQSPQLYKQQLMA--AGFERVYEIGPIFRAEEHNTHRHLNEATSIDI 228 (428)
T ss_pred CEEEeCCceecCCCCCCcceeeeEecCC-cEEECcCHHHHHHHHHh--cccCcEEEEecccccCCCCCccchheeeEeee
Confidence 9999999999999999999999999876 46788888765433333 36999999999999999998999999999999
Q ss_pred eeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccc
Q 012529 247 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 326 (461)
Q Consensus 247 e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~ 326 (461)
|++|.|++|+|+++|++|+++++.+.+.++.+++..+.. + .....||++|||.||++++++.|.+ ..
T Consensus 229 e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~--------~-~~~~~pf~rity~eA~~~l~~~g~~----~~ 295 (428)
T TIGR00458 229 EMAFEDHHDVMDILEELVVRVFEDVPERCAHQLETLEFK--------L-EKPEGKFVRLTYDEAIEMANAKGVE----IG 295 (428)
T ss_pred eeccCCHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccc--------c-ccCCCCceEEEHHHHHHHHHHcCCC----CC
Confidence 999999999999999999999999998877665443211 0 0124689999999999999987754 46
Q ss_pred ccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccC-CCccceeccccccCCceeeechhhhcccHHHHHHHHHHc
Q 012529 327 WGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 405 (461)
Q Consensus 327 ~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~-~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~ 405 (461)
||.+++..+|++|.+.+ . .|+||+|||.+++|||++.+ +++++++|||||++| +||+||++|+|+++.++++++++
T Consensus 296 ~~~~l~~~~E~~l~~~~-~-~p~fi~d~P~~~~pfy~~~~~~~p~~~~~fdl~~~g-~Ei~~g~~r~~~~~~l~~~~~~~ 372 (428)
T TIGR00458 296 WGEDLSTEAEKALGEEM-D-GLYFITDWPTEIRPFYTMPDEDNPEISKSFDLMYRD-LEISSGAQRIHLHDLLVERIKAK 372 (428)
T ss_pred CccccchHHHHHHHHHh-C-CCEEEEeCchhcCcccccccCCCCCEEEEEEEEeCC-eEEeeCchhcCCHHHHHHHHHHc
Confidence 88899999999998755 3 79999999999999997655 455789999999999 59999999999999999999999
Q ss_pred CCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 406 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 406 ~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
|++++.++|||+|++||+|||||||||||||+|++||.+|||||++|||+++|+.
T Consensus 373 g~~~~~~~~yl~a~~~G~pP~~G~GiGidRL~m~l~g~~~Irdv~~FPr~~~r~~ 427 (428)
T TIGR00458 373 GLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREAVLFPRDRKRLT 427 (428)
T ss_pred CCChHHHHHHHHHHHCCCCCcCceeecHHHHHHHHcCCCchheEEeccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999985
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). |
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-98 Score=775.32 Aligned_cols=424 Identities=30% Similarity=0.508 Sum_probs=373.4
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC--cchhhhhhcCCCCCcEEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIW 87 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V~ 87 (461)
++|.|+++.+. ..|++|+|+|||+++|.+|+++|++|||++|. ||||++++. ..++.++. |+.||+|.
T Consensus 3 ~~~~~~~l~~~------~~g~~V~i~GrV~~~R~~gk~~Fl~LrD~~g~--iQ~v~~~~~~~~~~~~~~~--L~~gs~V~ 72 (437)
T PRK05159 3 KRHLTSELTPE------LDGEEVTLAGWVHEIRDLGGIAFLILRDRSGI--IQVVVKKKVDEELFETIKK--LKRESVVS 72 (437)
T ss_pred ceeEhhhCChh------hCCCEEEEEEEeEeeecCCCeEEEEEEcCCcE--EEEEEeCCccHHHHHHHhC--CCCCcEEE
Confidence 68899999874 68999999999999999999999999999975 999998764 23445667 99999999
Q ss_pred EEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCccc---CChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 012529 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (461)
Q Consensus 88 v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~---~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~ 164 (461)
|+|++.+++...+++||++++++|||+|..++|+.... .+.++++++||||+|++.++++|++||.+++++|+||.+
T Consensus 73 v~G~v~~~~~~~~~~el~~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~ 152 (437)
T PRK05159 73 VTGTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYE 152 (437)
T ss_pred EEEEEEcCCCCCCCEEEEEeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999877778999999999999998678875432 357788899999999999999999999999999999999
Q ss_pred CCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccc
Q 012529 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMI 244 (461)
Q Consensus 165 ~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtml 244 (461)
+||+||+||+|+++++||+++.|.++|++. ..+|++||.+.+..+.+ +|++||||||||||||+++|.|||||||||
T Consensus 153 ~gf~EV~TP~L~~~~~eg~~~~f~~~~~~~-~~~L~~Spql~~q~l~~--~g~~rVf~i~~~FR~E~~~t~rHl~EFt~l 229 (437)
T PRK05159 153 NGFTEIFTPKIVASGTEGGAELFPIDYFEK-EAYLAQSPQLYKQMMVG--AGFERVFEIGPVFRAEEHNTSRHLNEYTSI 229 (437)
T ss_pred CCCEEEeCCcccccCCCCCcceEeEEecCC-ceEecCCHHHHHHHHHh--cCCCcEEEEeceeeCCCCCCcccchhhhee
Confidence 999999999999999999999999998876 46788888665433333 359999999999999999888999999999
Q ss_pred eeeeccCC-HHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccc
Q 012529 245 EPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF 323 (461)
Q Consensus 245 E~e~a~~d-~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~ 323 (461)
|||++|.| ++++|+++|++|+++++.+.+.+++++...+.. + ...+.||+++||.||++++++.|.+
T Consensus 230 E~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~--------~-~~~~~~f~rit~~eA~~~l~~~~~~--- 297 (437)
T PRK05159 230 DVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIE--------L-PVPETPIPRITYDEAIEILKSKGNE--- 297 (437)
T ss_pred eeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccC--------C-CcCCCCceEeEHHHHHHHHHHcCCC---
Confidence 99999998 999999999999999999988877766554421 1 1234689999999999999887753
Q ss_pred cccccccCChHhhhchhhhcc---cCCCeeeeeCCccCCccccccCCC-ccceeccccccCCceeeechhhhcccHHHHH
Q 012529 324 LVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLE 399 (461)
Q Consensus 324 ~~~~g~~l~~~~e~~l~e~~~---~~~p~~i~~~P~~~~pf~~~~~~~-~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~ 399 (461)
..||.+++..+|+.|.+.+. ...|+||+|||.+++|||++.+++ +++++|||||++|+ ||+||++|+||+++|+
T Consensus 298 -~~~~~~~~~~~e~~l~~~~~~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~g~-Ei~~g~~r~~d~~~~~ 375 (437)
T PRK05159 298 -ISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFRGL-EITSGGQRIHRYDMLV 375 (437)
T ss_pred -CCCCCCCCcHHHHHHHHHHhhhcCCceEEEecCchhcCcceeeecCCCCCEEEEEEEEECCE-EEeeCeEEcCCHHHHH
Confidence 46888999999998865331 113899999999999999876544 56899999999996 9999999999999999
Q ss_pred HHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 400 GRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 400 ~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
++++++|++++.++|||+|++||+|||||||||||||+|++||.+|||||++|||+++||.
T Consensus 376 ~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g~~~Irdv~~FPr~~~~~~ 436 (437)
T PRK05159 376 ESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLFPRDRHRLT 436 (437)
T ss_pred HHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcCCCchhEEeeccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999985
|
|
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-96 Score=766.32 Aligned_cols=431 Identities=25% Similarity=0.376 Sum_probs=362.0
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc----chhhhhhcCCCCCcEE
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQVKSGLITTGASI 86 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~----~~~~~~~~~l~~g~~V 86 (461)
.+.+++|... ...|++|+|+|||+++|.+|+++|++|||+++. ||+|++.+.. .++.++. |+.||+|
T Consensus 65 ~~~i~~l~~~-----~~~g~~V~v~Grv~~~R~~Gk~~Fl~LRd~~~~--iQ~v~~~~~~~~~~~~~~~~~--l~~esiV 135 (550)
T PTZ00401 65 FIPVAVLSKP-----ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSDS--VQAMAAVEGDVPKEMIDFIGQ--IPTESIV 135 (550)
T ss_pred eEEHHHCCcc-----ccCCCEEEEEEEEEEEecCCCeEEEEEEeCCcC--EEEEEECCCccCHHHHHHHhc--CCCCCEE
Confidence 3667777653 237999999999999999999999999999974 9999975421 1334556 9999999
Q ss_pred EEEeeEeecC-----CCCccEEEEEeEEEEeccCCCCCCCCcccC-----------ChhhhhcCccccCCCHHHHHHHHH
Q 012529 87 WIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQKKRV-----------SREFLRTKAHLRPRTNTFGAVARV 150 (461)
Q Consensus 87 ~v~G~~~~~~-----~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~-----------~~~~~r~~r~l~~R~~~~~~~l~~ 150 (461)
.|+|+|++.+ +.++++||++++++|||+|..++|++.++. +.++..++||||+|++.++++|++
T Consensus 136 ~V~G~v~~~~~~~~~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~ 215 (550)
T PTZ00401 136 DVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFRL 215 (550)
T ss_pred EEEEEEEecCccCCCCCCccEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHHH
Confidence 9999998742 346789999999999999987789876542 345566999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccC
Q 012529 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAE 230 (461)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E 230 (461)
||.|++++|+||.++||+||+||+|+++++||++++|.|+|++. ..+|++||.+. +|.. +.+|++||||||||||||
T Consensus 216 rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v~yf~~-~~~L~qSpql~-kq~l-i~~g~~rVfeI~p~FRaE 292 (550)
T PTZ00401 216 QSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKLEYFNR-FAYLAQSPQLY-KQMV-LQGDVPRVFEVGPVFRSE 292 (550)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCccccCCCCccccccccccCCC-CeecCCCHHHH-HHHH-HhcCCCCEEEEeCeEeCC
Confidence 99999999999999999999999999999999999999999876 57888887654 2221 123699999999999999
Q ss_pred CCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHHHhcCcchhcccccccc----------------------
Q 012529 231 NSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIE---------------------- 287 (461)
Q Consensus 231 ~~~t~rHl~EFtmlE~e~a~~-d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~---------------------- 287 (461)
+++|.|||||||||||||+|. +|+++|+++|+||.++++.+.+. ..+++.....++
T Consensus 293 ~s~T~RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~-~~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~ 371 (550)
T PTZ00401 293 NSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATH-TKELKAVCQQYPFEPLVWKLTPERMKELGVGVIS 371 (550)
T ss_pred CCCCCCCccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHcc-chhhhhhccccccccccccccHHHHHhcCCCccc
Confidence 999999999999999999986 79999999999999999998765 333333211000
Q ss_pred ------chhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchh---hhcccCCCeeeee-CCcc
Q 012529 288 ------KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT---EEAFGGCPVIVSD-YPKE 357 (461)
Q Consensus 288 ------~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~---e~~~~~~p~~i~~-~P~~ 357 (461)
..+.+.+.. ++.+|+||+|.||+++|++.+. ..+.|++|++..+|++|. ++.++ .|+||+| ||.+
T Consensus 372 ~~~~~~~~l~~~~~~-~~~~~~rl~y~eai~lL~~~~~---~~~~~~~dl~~~~E~~L~~~v~~~~~-~~~fI~d~yP~~ 446 (550)
T PTZ00401 372 EGVEPTDKYQARVHN-MDSRMLRINYMHCIELLNTVLE---EKMAPTDDINTTNEKLLGKLVKERYG-TDFFISDRFPSS 446 (550)
T ss_pred ccccchHHHHHHHHh-cCCCcccccHHHHHHHHHHhcc---cCCCcccccCchHHHHHHHHHHHhcC-CCEEEECCCChh
Confidence 001111221 3567999999999999999752 224688899999999884 33444 7999998 9999
Q ss_pred CCccccccC-CCccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHH
Q 012529 358 IKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERL 436 (461)
Q Consensus 358 ~~pf~~~~~-~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRL 436 (461)
++|||++.+ +|+++++|||||++| +||+||++|+||++.|.++++++|++++.++|||+|++||+|||||||||||||
T Consensus 447 ~rpFY~~~~~~dp~~s~~fDlf~~G-~EI~sG~qR~~d~~~l~~r~~~~G~d~~~~~~Yl~a~~~G~PPhgG~GiGlERL 525 (550)
T PTZ00401 447 ARPFYTMECKDDERFTNSYDMFIRG-EEISSGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERV 525 (550)
T ss_pred hCchhcCcCCCCCCEEEEEEEEeCC-EEEccchhhcCCHHHHHHHHHHcCCCchhhHHHHHHHHcCCCCCceEEEhHHHH
Confidence 999997655 456789999999999 599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCccccccCCCCCCCCC
Q 012529 437 VQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 437 vm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
+|++||++|||||++|||+|+||.
T Consensus 526 vM~~lg~~nIR~v~lFPRdp~rl~ 549 (550)
T PTZ00401 526 VMLYLGLSNVRLASLFPRDPQRTT 549 (550)
T ss_pred HHHHhCCCcHheeecCCCCCCCCC
Confidence 999999999999999999999984
|
|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-96 Score=765.91 Aligned_cols=427 Identities=26% Similarity=0.419 Sum_probs=362.4
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc-----chhhhhhcCCCCCcE
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQVKSGLITTGAS 85 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~-----~~~~~~~~~l~~g~~ 85 (461)
.+.|.+|.. .+.|++|+|+|||+++|.+|+++|++|||+++ +||||+..+.. .++.+.. |+.||+
T Consensus 69 ~~~i~~l~~------~~~g~~V~v~Grv~~~R~~gk~~Fl~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es~ 138 (530)
T PLN02850 69 WTDVSDLGE------ELAGSEVLIRGRVHTIRGKGKSAFLVLRQSGF--TVQCVVFVSEVTVSKGMVKYAKQ--LSRESV 138 (530)
T ss_pred EeEhhhcch------hhCCCEEEEEEEEEEEccCCCeEEEEEEeCCc--CEEEEEECCccccCHHHHHHHhC--CCCCCE
Confidence 466777765 37899999999999999999999999999986 49999976542 1233556 999999
Q ss_pred EEEEeeEeecC----CCCccEEEEEeEEEEeccCCCCCCCCccc--------------------CChhhhhcCccccCCC
Q 012529 86 IWIQGNVVPSQ----GSKQKVELKVNKIVLVGKSDPSYPIQKKR--------------------VSREFLRTKAHLRPRT 141 (461)
Q Consensus 86 V~v~G~~~~~~----~~~~~~el~~~~i~vl~~~~~~~Pl~~~~--------------------~~~~~~r~~r~l~~R~ 141 (461)
|.|+|+|++++ +.++++||++++++|||+|..++|++.++ .+.++..+|||||+|+
T Consensus 139 V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR~ 218 (530)
T PLN02850 139 VDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRT 218 (530)
T ss_pred EEEEEEEEccCcCCCCCCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhcC
Confidence 99999998542 23458999999999999998779987654 1245556999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeE
Q 012529 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVY 221 (461)
Q Consensus 142 ~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVf 221 (461)
+.++++||+||.|++++|+||.++||+||+||+|+++++||++++|.|.|++. ..+|++||.+.+..+.. ++++|||
T Consensus 219 ~~~qaifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v~yf~~-~~~L~qSpql~kq~li~--~g~~rVf 295 (530)
T PLN02850 219 PANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRLDYKGQ-PACLAQSPQLHKQMAIC--GDFRRVF 295 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeeeccCCc-ceecCCCHHHHHHHHHH--hcCCceE
Confidence 99999999999999999999999999999999999999999999999998876 57788887655332222 3699999
Q ss_pred EEecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcC
Q 012529 222 TFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 300 (461)
Q Consensus 222 eI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 300 (461)
|||||||||+++|+|||+|||||||||+|. +|+|+|+++|+||++++..+.+.+..+++.+....+... + +.+ .
T Consensus 296 eIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~~~~~~~---~-~~~-~ 370 (530)
T PLN02850 296 EIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEP---L-KYL-P 370 (530)
T ss_pred EEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccCCcch---h-hhc-C
Confidence 999999999999999999999999999998 599999999999999999998887777665543221111 1 112 2
Q ss_pred CCccccHHHHHHHHHHhcccccccccccccCChHhhhchhh---hcccCCCeeeeeCCccCCccccccC-CCccceeccc
Q 012529 301 DFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMD 376 (461)
Q Consensus 301 ~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e---~~~~~~p~~i~~~P~~~~pf~~~~~-~~~~~~~~fd 376 (461)
+++++||+||+++|++.|.+. .++.|++.++|+.|+. ..++..++||+|||..++|||++.+ +|+++++|||
T Consensus 371 ~~~rit~~ea~~~L~~~g~~~----~~~~dl~~~~E~~Lg~~v~~~~~~~~~ii~~yP~~~~pfY~~~~~~d~~~~~~fD 446 (530)
T PLN02850 371 KTLRLTFAEGIQMLKEAGVEV----DPLGDLNTESERKLGQLVKEKYGTDFYILHRYPLAVRPFYTMPCPDDPKYSNSFD 446 (530)
T ss_pred CcccCCHHHHHHHHHHcCCCC----CCCCCcchHHHHHHHHHHHHhcCCCeEEEECCccccCchhccccCCCCCeEEEEE
Confidence 678999999999999988642 4567899999988853 2233246788999999999997655 4567899999
Q ss_pred cccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCC
Q 012529 377 MLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 456 (461)
Q Consensus 377 l~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~ 456 (461)
||++| +||+||++|+||++.|.++++++|++++.++|||+|++||+|||||||||||||+|++||++|||||++|||+|
T Consensus 447 l~i~G-~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~Yl~a~~~G~pPhgG~GiGlERLvM~l~g~~nIr~v~~FPR~p 525 (530)
T PLN02850 447 VFIRG-EEIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDP 525 (530)
T ss_pred EEeCC-EEEeccceecCCHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCCchheEeecCCCC
Confidence 99999 59999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 012529 457 GSVE 460 (461)
Q Consensus 457 ~~~~ 460 (461)
+||.
T Consensus 526 ~rl~ 529 (530)
T PLN02850 526 QRLA 529 (530)
T ss_pred CCCC
Confidence 9984
|
|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-93 Score=741.63 Aligned_cols=427 Identities=21% Similarity=0.311 Sum_probs=348.8
Q ss_pred CccccceeeeccccCCCcC----CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc---chhhhhh
Q 012529 5 VGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKS 77 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~----~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~---~~~~~~~ 77 (461)
.++|.++++++++.+.+.+ .....|++|+|+|||+++|.+||++|++|+|++|. ||+|++++.. .++..+.
T Consensus 25 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~gk~~F~~l~D~~g~--iQ~~~~~~~~~~~~~~~~~~ 102 (496)
T TIGR00499 25 LNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMGKATFITLQDESGQ--IQLYVNKDDLPEDFYEFDEY 102 (496)
T ss_pred CCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCCCeEEEEEEcCCcc--EEEEEECCcCcHHHHHHHHh
Confidence 4678899999999876532 11244889999999999999999999999999974 9999987642 1333331
Q ss_pred cCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCCh---hhhhcCccccCCC-HHHHHHHHHHHH
Q 012529 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPRT-NTFGAVARVRNA 153 (461)
Q Consensus 78 ~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~---~~~r~~r~l~~R~-~~~~~~l~~Rs~ 153 (461)
.|+.||+|.|+|++.+++++ ++||+++++++||+|. .|+|.+.+++ ++..++||||+|+ +.++++|++||+
T Consensus 103 -~l~~gd~V~v~G~~~~t~~g--elel~~~~i~ilsk~~--~plP~k~~~~~d~e~r~r~R~Ldl~~n~~~~~~~r~Rs~ 177 (496)
T TIGR00499 103 -LLDLGDIIGVTGYPFKTKTG--ELSVHVTELQILTKAL--RPLPDKFHGLTDQETRYRQRYLDLIVNPDSRQTFLVRSK 177 (496)
T ss_pred -cCCCCCEEEEEEEEEECCCC--cEEEEeeEEEEEecCC--CCCCccccccCChhhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 28999999999999998864 7999999999999997 4566555543 5555899999995 689999999999
Q ss_pred HHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeee--cCCCcccccCCccccCCCccccCcCcceeEEEecccccCC
Q 012529 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTT--LIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN 231 (461)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~--~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~ 231 (461)
|++++|+||.++||+||+||+|++++++++++||.+.+ ++. ..+|..||++.++++..+ |++||||||||||||+
T Consensus 178 i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t~~~~~~~-~~yLriSpELylKrlivg--G~~rVfeIg~~FRnE~ 254 (496)
T TIGR00499 178 IIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFITHHNALDM-DLYLRIAPELYLKRLIVG--GFEKVYEIGRNFRNEG 254 (496)
T ss_pred HHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEeecccCCC-ceEEecCHHHHHHHHHhC--CCCceEEEecceecCC
Confidence 99999999999999999999999988777789998754 333 467888888776655444 5999999999999999
Q ss_pred CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHH
Q 012529 232 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 311 (461)
Q Consensus 232 ~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~ 311 (461)
++ .||||||||||||++|+||+|+|+++|+||+++++.+.+.++..+. . ....++.||+++||.||+
T Consensus 255 ~~-~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~~~~~~~~~---~---------~~~~~~~pf~rit~~eai 321 (496)
T TIGR00499 255 VD-TTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITYG---E---------LEIDFKKPFKRITMVEAI 321 (496)
T ss_pred CC-CcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHhcccceecC---c---------eeccCCCCceEEEHHHHH
Confidence 96 6999999999999999999999999999999999999876543211 0 011234589999999999
Q ss_pred HHHHH-hcccc---------------------cccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCc
Q 012529 312 ELLIK-AKKKF---------------------EFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG 369 (461)
Q Consensus 312 ~~l~~-~~~~~---------------------~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~ 369 (461)
+++.+ .|.++ .....||..+...++.++.+.+ . +|+||+|||.+++||++...+++
T Consensus 322 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ve~~l-~-~P~fv~dyP~~~splak~~~~~p 399 (496)
T TIGR00499 322 KKYDMETGIDFDDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLEHTL-I-QPTFITHYPAEISPLAKRNPSNP 399 (496)
T ss_pred HHHHHhcCCCchhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHHHhcc-C-CCEEEECCchhcCcccccCCCCC
Confidence 87643 23221 1112345566667777765544 4 79999999999999976655666
Q ss_pred cceeccccccCCceeeechhhhcccHHHHHHHHH------HcCCCcccH--HHHHHHhccCCCCCccccccHHHHHHHHc
Q 012529 370 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD------ELKLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFAT 441 (461)
Q Consensus 370 ~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~------~~~~~~~~~--~~yl~a~~~G~pP~gG~giGidRLvm~l~ 441 (461)
+.++|||||++|+ ||+||++|+||++.|+++++ +.|.+++.+ +|||+|++||||||||||||||||+|++|
T Consensus 400 ~~~~rFeL~i~G~-Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~yl~a~~~G~PP~gG~GiGiDRLvMllt 478 (496)
T TIGR00499 400 EFTDRFELFIAGK-EIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGMPPTGGLGIGIDRLVMLLT 478 (496)
T ss_pred CeEEEEEEEeCCe-EEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHcCCCCCceEEEhHHHHHHHHh
Confidence 7899999999997 99999999999999998864 457776655 79999999999999999999999999999
Q ss_pred CCCCccccccCCCCCC
Q 012529 442 GVENIRDAIPFPRTPG 457 (461)
Q Consensus 442 g~~~Irdv~~FPr~~~ 457 (461)
|.+|||||++||+.+.
T Consensus 479 g~~~Irdvi~FP~~~~ 494 (496)
T TIGR00499 479 DSKSIRDVILFPAMRP 494 (496)
T ss_pred CCCcHheeccCCCCCC
Confidence 9999999999999764
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-92 Score=736.78 Aligned_cols=437 Identities=19% Similarity=0.259 Sum_probs=365.4
Q ss_pred CccccceeeeccccCCCcC---CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc-----chhhh-
Q 012529 5 VGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQV- 75 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~---~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~-----~~~~~- 75 (461)
.++|.++++++++.+.+.+ +....|++|+|+|||+++|.+||++|++|+|++|. ||||++++.. .|..+
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~Gk~~F~~LrD~~g~--iQv~~~~~~~~~~~~~~~~~~ 158 (553)
T PLN02502 81 PYKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFGKLAFYDLRDDGGK--IQLYADKKRLDLDEEEFEKLH 158 (553)
T ss_pred CCCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCCCeEEEEEecCCcc--EEEEEECccccchhHHHHHHH
Confidence 5789999999999876532 34467899999999999999999999999999974 9999986642 25554
Q ss_pred hhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCC---hhhhhcCccccCC-CHHHHHHHHHH
Q 012529 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVR 151 (461)
Q Consensus 76 ~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~---~~~~r~~r~l~~R-~~~~~~~l~~R 151 (461)
+. |+.||+|.|+|++.+++++ ++||.+++++|||+|. .|+|.+.++ .+...++||||++ ++.++++|++|
T Consensus 159 ~~--l~~gdiV~V~G~~~~t~~g--elel~~~~i~vLs~~l--~plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r~R 232 (553)
T PLN02502 159 SL--VDRGDIVGVTGTPGKTKKG--ELSIFPTSFEVLTKCL--LMLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFRTR 232 (553)
T ss_pred hC--CCCCcEEEEEEEEEecCCC--CEEEEEeEEEEEeccC--CCCCcccccccchhhhccchhhhhhcCHHHHHHHHHH
Confidence 35 9999999999999998865 8999999999999997 566666554 3444479999995 88899999999
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceee--eecCCCcccccCCccccCCCccccCcCcceeEEEeccccc
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV--TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRA 229 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v--~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~ 229 (461)
|.|+++||+||.++||+||+||+|++++++++++||.+ .+++. ..+|..||++.++++.++ |++|||||||||||
T Consensus 233 s~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~t~~n~~~~-~~yL~~Spel~lK~L~v~--g~~rVfeIg~~FRn 309 (553)
T PLN02502 233 AKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFVTHHNDLNM-DLYLRIATELHLKRLVVG--GFERVYEIGRQFRN 309 (553)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeeccCCCccccceeeecccCCc-ceeeecCHHHHHHHHHHh--ccCCEEEEcCeeeC
Confidence 99999999999999999999999999887777889964 22332 467888887666554443 59999999999999
Q ss_pred CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCc-----chhccccccccchhhhhhhhhhcCCCcc
Q 012529 230 ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-----EDMDFFNTWIEKGIIDRLSTVAERDFVQ 304 (461)
Q Consensus 230 E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~-----~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 304 (461)
|+++ .||||||||||||++|.||+|+|+++|+||+++++.+.+.++ .++++..+|.+.++.+.+++..+.+++.
T Consensus 310 E~~~-~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v~~~~~~~~~~~~i~~~~p~~rit~~e~l~~~~g~~~~~ 388 (553)
T PLN02502 310 EGIS-TRHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYKIKYHGIEIDFTPPFRRISMISLVEEATGIDFPA 388 (553)
T ss_pred CCCC-CccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHHhcccccccCCccccCCCCceeccHHHHHHHHhCCCCCc
Confidence 9997 599999999999999999999999999999999999986653 3455556777788888888888888876
Q ss_pred -ccHHHHHHHHHH----hcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceecccccc
Q 012529 305 -LSYTDAIELLIK----AKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLV 379 (461)
Q Consensus 305 -it~~ea~~~l~~----~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~ 379 (461)
++++++.+.|.+ .++++.....||..+...++.++.+.+ . +|+||+|||.+++|||++..+|+++++|||||+
T Consensus 389 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~l-~-~PtFV~dyP~~~splak~~~~~p~~~erFELfi 466 (553)
T PLN02502 389 DLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETL-V-QPTFVLDHPVEMSPLAKPHRSKPGLTERFELFI 466 (553)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhc-C-CCEEEECCccccCcccccCCCCCCeEEEEEEEe
Confidence 888888765543 354444445788888888999887755 4 799999999999999987777888999999999
Q ss_pred CCceeeechhhhcccHHHHHHHHHHc----CC-Ccc--cH-HHHHHHhccCCCCCccccccHHHHHHHHcCCCCcccccc
Q 012529 380 PRIGELIGGSQREERLEYLEGRLDEL----KL-NRD--SY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIP 451 (461)
Q Consensus 380 ~G~~Ei~~g~~r~~~~~~~~~~~~~~----~~-~~~--~~-~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~ 451 (461)
+|+ ||+||++|.||+..|++++.++ +. +.+ .+ ++||+|++||||||||||||||||+|+|||..|||||++
T Consensus 467 ~G~-Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGmPP~gG~GiGiDRLvMlltg~~sIrdVi~ 545 (553)
T PLN02502 467 NGR-ELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLPPTGGWGLGIDRLVMLLTDSASIRDVIA 545 (553)
T ss_pred CCe-EEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCCCCCceEEehHHHHHHHHcCCcchheeec
Confidence 997 9999999999999888777532 22 122 13 669999999999999999999999999999999999999
Q ss_pred CCCCC
Q 012529 452 FPRTP 456 (461)
Q Consensus 452 FPr~~ 456 (461)
||+..
T Consensus 546 FP~~k 550 (553)
T PLN02502 546 FPAMK 550 (553)
T ss_pred CCcCC
Confidence 99865
|
|
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-91 Score=729.71 Aligned_cols=426 Identities=21% Similarity=0.311 Sum_probs=342.7
Q ss_pred CccccceeeeccccCCCcC----CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc---chhhhhh
Q 012529 5 VGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKS 77 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~----~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~---~~~~~~~ 77 (461)
.++|.++++++++...+.+ .....+++|+|+|||+++|.+|+++|++|||++|. ||||++++.. .|+.++.
T Consensus 26 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g~~~Fi~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~ 103 (491)
T PRK00484 26 PNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMGKASFATLQDGSGR--IQLYVSKDDVGEEALEAFKK 103 (491)
T ss_pred CCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCCceEEEEEEcCCcc--EEEEEECCcCCHHHHHHHhc
Confidence 4678999999999876432 11122478999999999999999999999999974 9999987642 3556667
Q ss_pred cCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCC---hhhhhcCccccCC-CHHHHHHHHHHHH
Q 012529 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNA 153 (461)
Q Consensus 78 ~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~---~~~~r~~r~l~~R-~~~~~~~l~~Rs~ 153 (461)
|+.||+|.|+|++.+++++ ++||.+++++|||+|.. |+|.+.++ .+...++||||+| ++.++++|++||+
T Consensus 104 --l~~g~~v~v~G~v~~t~~g--e~el~~~~~~vls~~~~--plP~~~~~~~~~~~r~r~R~lDl~~~~~~~~~~r~Rs~ 177 (491)
T PRK00484 104 --LDLGDIIGVEGTLFKTKTG--ELSVKATELTLLTKSLR--PLPDKFHGLTDVETRYRQRYVDLIVNPESRETFRKRSK 177 (491)
T ss_pred --CCCCCEEEEEEEEEEcCCC--cEEEEEeEEEEEeccCC--CCCcccccccchhhhccceeeehhcCHHHHHHHHHHHH
Confidence 9999999999999998765 89999999999999974 44444333 3444489999997 7889999999999
Q ss_pred HHHHHHHHhhhCCcEEEecceeecCCCCCCCcceee--eecCCCcccccCCccccCCCccccCcCcceeEEEecccccCC
Q 012529 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV--TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN 231 (461)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v--~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~ 231 (461)
+++++|+||.++||+||+||+|+++++++++++|.+ .+++. ..+|.+||++.++++.++ |++||||||||||||+
T Consensus 178 i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~-~~yL~~Spql~lk~l~v~--g~~rVfei~~~FR~E~ 254 (491)
T PRK00484 178 IISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITHHNALDI-DLYLRIAPELYLKRLIVG--GFERVYEIGRNFRNEG 254 (491)
T ss_pred HHHHHHHHHHHCCCEEEECCceeccCCCccceeeeeccccCCC-ceEeccCHHHHHHHHHhc--cCCcEEEEecceecCC
Confidence 999999999999999999999998877777799974 34443 467888887665544433 5999999999999999
Q ss_pred CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHH
Q 012529 232 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 311 (461)
Q Consensus 232 ~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~ 311 (461)
++ .||||||||||||++|.|++|+|+++|+||+++++.+.+.. .+.+.+.. ..++.||+++||.||+
T Consensus 255 ~~-~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~~~~~--~i~~~~~~----------~~~~~pf~rity~eai 321 (491)
T PRK00484 255 ID-TRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTT--KVTYQGTE----------IDFGPPFKRLTMVDAI 321 (491)
T ss_pred CC-CCcCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCc--eEecCCEe----------ecCCCCceEEEHHHHH
Confidence 96 59999999999999999999999999999999999987643 23222110 1134689999999998
Q ss_pred HHHHHh-----------------cccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceec
Q 012529 312 ELLIKA-----------------KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 374 (461)
Q Consensus 312 ~~l~~~-----------------~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~ 374 (461)
+.+... +.+......||..++..++.+ +++.+. +|+||+|||.+++|||++.++|+++++|
T Consensus 322 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-ve~~~~-~P~Fi~dyP~~~~pf~k~~~~~~~~~~r 399 (491)
T PRK00484 322 KEYTGVDFDDMTDEEARALAKELGIEVEKSWGLGKLINELFEEF-VEPKLI-QPTFITDYPVEISPLAKRHREDPGLTER 399 (491)
T ss_pred HHHhCCCcccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH-hhhhcC-CcEEEECCChHHhhhhccCCCCCCeEEE
Confidence 876421 111111112344444555555 444444 7999999999999999877777789999
Q ss_pred cccccCCceeeechhhhcccHHHHHHHHHHc------CCCcc-cH-HHHHHHhccCCCCCccccccHHHHHHHHcCCCCc
Q 012529 375 MDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRD-SY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 446 (461)
Q Consensus 375 fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~------~~~~~-~~-~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~I 446 (461)
||||++|+ ||+||++|+||++.|+++++++ |.++. .+ +|||+|++||||||||||||||||+|++||.+||
T Consensus 400 FdL~i~G~-Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~~G~PP~gG~GiGiDRLvm~ltg~~~I 478 (491)
T PRK00484 400 FELFIGGR-EIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALEYGMPPTGGLGIGIDRLVMLLTDSPSI 478 (491)
T ss_pred EEEEECCE-EEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHCCCCCCCeEEEeHHHHHHHHhCCCcH
Confidence 99999997 9999999999999999988642 33332 24 6899999999999999999999999999999999
Q ss_pred cccccCCCCCC
Q 012529 447 RDAIPFPRTPG 457 (461)
Q Consensus 447 rdv~~FPr~~~ 457 (461)
|||++||+++.
T Consensus 479 rdvi~FP~~~~ 489 (491)
T PRK00484 479 RDVILFPLMRP 489 (491)
T ss_pred HhcccCCCCCC
Confidence 99999999875
|
|
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-90 Score=724.61 Aligned_cols=425 Identities=20% Similarity=0.308 Sum_probs=342.1
Q ss_pred CccccceeeeccccCCCcC----CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc---chh-hhh
Q 012529 5 VGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYD-QVK 76 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~----~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~---~~~-~~~ 76 (461)
.++|.++++++++.+.+++ .....|++|+|+|||+++|.+||++|++|+|++|. ||||++++.. .|. .++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~Gk~~F~~lrD~~g~--iQ~~~~~~~~~~~~~~~~~~ 114 (505)
T PRK12445 37 PNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGR--IQLYVARDSLPEGVYNDQFK 114 (505)
T ss_pred CCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCCCcEEEEEEeCCcc--EEEEEECCccchhhHHHHHh
Confidence 4678999999999876532 11244788999999999999999999999999974 9999986542 344 355
Q ss_pred hcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCC---hhhhhcCccccCC-CHHHHHHHHHHH
Q 012529 77 SGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRN 152 (461)
Q Consensus 77 ~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~---~~~~r~~r~l~~R-~~~~~~~l~~Rs 152 (461)
. |+.||+|.|+|++.+++++ ++||.++++++||+|. .|+|.+.++ .+...++||||+| ++..+++|++||
T Consensus 115 ~--l~~Gd~V~v~G~~~~t~~g--elel~~~~~~llsk~~--~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs 188 (505)
T PRK12445 115 K--WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKAL--RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRS 188 (505)
T ss_pred c--CCCCCEEEEEEEEEecCCC--cEEEEEeEEEEEecCC--CCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 6 9999999999999998855 8999999999999997 455555443 3444589999999 578999999999
Q ss_pred HHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceee--eecCCCcccccCCccccCCCccccCcCcceeEEEecccccC
Q 012529 153 ALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV--TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAE 230 (461)
Q Consensus 153 ~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v--~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E 230 (461)
+|+++||+||.++||+||+||+|++..+++++.||.+ .+++. ..+|.+||++.++++.++ |++||||||||||||
T Consensus 189 ~i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF~t~~~~~~~-~~yL~~SpELylKrlivg--G~~rVfeIg~~FRnE 265 (505)
T PRK12445 189 KILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDL-DMYLRIAPELYLKRLVVG--GFERVFEINRNFRNE 265 (505)
T ss_pred HHHHHHHHHHHHCCCEEeeCCeeEecCCCCcccceecccccCCc-ceeeecCHHHHHHHHHhc--cCCcEEEEehhccCC
Confidence 9999999999999999999999998766666779953 23333 457888887666655444 599999999999999
Q ss_pred CCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHH
Q 012529 231 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 310 (461)
Q Consensus 231 ~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea 310 (461)
++ +.||||||||||||++|.||+|+|+++|+||+++++.+.+.+.... ... .+ -+..||+++||.||
T Consensus 266 ~~-~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~~~~~--~~~--------~i--~~~~pf~rit~~ea 332 (505)
T PRK12445 266 GI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTY--GEH--------VF--DFGKPFEKLTMREA 332 (505)
T ss_pred CC-CCCcCcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhcccceec--Cce--------ec--cCCCCceEEEHHHH
Confidence 99 8999999999999999999999999999999999999876543211 000 00 12357888888888
Q ss_pred HHHHHH-------------------hcccccccccccc-cCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCcc
Q 012529 311 IELLIK-------------------AKKKFEFLVKWGC-DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGR 370 (461)
Q Consensus 311 ~~~l~~-------------------~~~~~~~~~~~g~-~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~ 370 (461)
++.+.. .|...+ ..|+. .+-......++++.+. +|+||+|||.+++|||++.+++++
T Consensus 333 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~vE~~l~-~P~Fv~dyP~~~splak~~~~~p~ 409 (505)
T PRK12445 333 IKKYRPETDMADLDNFDAAKALAESIGITVE--KSWGLGRIVTEIFDEVAEAHLI-QPTFITEYPAEVSPLARRNDVNPE 409 (505)
T ss_pred HHHHhCCCCccccCCHHHHHHHHHHcCCCCC--CCCCHHHHHHHHHHHHHHhhcC-CCEEEECCCchhCcccccCCCCCC
Confidence 877643 122111 12332 1333444455666665 899999999999999977666778
Q ss_pred ceeccccccCCceeeechhhhcccHHHHHHHHHHc------CCCcccH--HHHHHHhccCCCCCccccccHHHHHHHHcC
Q 012529 371 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFATG 442 (461)
Q Consensus 371 ~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~------~~~~~~~--~~yl~a~~~G~pP~gG~giGidRLvm~l~g 442 (461)
+++|||||++|+ ||+||++|+||+++|+++++++ |.+++.. +|||+|++||||||||||||||||+|++||
T Consensus 410 ~~~rFeL~i~G~-Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~yl~al~yG~PP~gG~GiGiDRLvMlltg 488 (505)
T PRK12445 410 ITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTN 488 (505)
T ss_pred ceEEEEEEeCCE-EEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHcCCCCCCeEEEhHHHHHHHHcC
Confidence 999999999996 9999999999999999998743 6555443 789999999999999999999999999999
Q ss_pred CCCccccccCCCCCC
Q 012529 443 VENIRDAIPFPRTPG 457 (461)
Q Consensus 443 ~~~Irdv~~FPr~~~ 457 (461)
.+|||||++||+++.
T Consensus 489 ~~sIrdvi~FP~~~~ 503 (505)
T PRK12445 489 SHTIRDVILFPAMRP 503 (505)
T ss_pred CCchheEecCCCCCC
Confidence 999999999999874
|
|
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-89 Score=722.75 Aligned_cols=440 Identities=15% Similarity=0.230 Sum_probs=362.2
Q ss_pred CccccceeeeccccCCCcC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCccCccEEEEEeCCC-----cchhh-
Q 012529 5 VGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYDQ- 74 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~---~~~~~~~~v~v~G~v~~~R~~~-~~~Fi~l~D~s~~~~iQvv~~~~~-----~~~~~- 74 (461)
.++|.++++++++.+.+++ +....+..|+|+|||+++|.+| +++|++|+|.+| .||||++++. ..|+.
T Consensus 105 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g--~iQv~~~~~~~~~~~~~~~~~ 182 (585)
T PTZ00417 105 PHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGA--KIQVLANFAFHDHTKSNFAEC 182 (585)
T ss_pred CCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCe--eEEEEEECCccCCCHHHHHHH
Confidence 4678889999999876532 1112356799999999999998 799999999886 4999998753 23544
Q ss_pred hhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCChhhhhcCccccCC-CHHHHHHHHHHHH
Q 012529 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPR-TNTFGAVARVRNA 153 (461)
Q Consensus 75 ~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~~~~r~~r~l~~R-~~~~~~~l~~Rs~ 153 (461)
.+. |+.||+|.|+|.+.+++++ ++||.++++++|++|..++|..-.-.+.+...++||||+| ++.++++|++||+
T Consensus 183 ~~~--l~~Gd~V~V~G~~~~t~~g--el~i~~~~i~llsk~l~~lP~~~g~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~ 258 (585)
T PTZ00417 183 YDK--IRRGDIVGIVGFPGKSKKG--ELSIFPKETIILSPCLHMLPMKYGLKDTEIRYRQRYLDLMINESTRSTFITRTK 258 (585)
T ss_pred Hhc--CCCCCEEEEEeEEcCCCCc--eEEEEEEEEEEEecCCCCCCcccCCCCcccccccchhhhhcCHHHHHHHHHHHH
Confidence 356 9999999999999887755 8999999999999998666654111233444479999998 7789999999999
Q ss_pred HHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCC--CcccccCCccccCCCccccCcCcceeEEEecccccCC
Q 012529 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP--SSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN 231 (461)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~--~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~ 231 (461)
|+++||+||.++||+||+||+|+++.++++++||. ++++. ...+|..||++.++++.++ |++||||||||||||+
T Consensus 259 Ii~aiR~Ff~~rGFlEVeTPiL~~~~GGA~a~PF~-T~~n~~d~~lYLriSpEL~lKrLlvg--G~~rVfeIgp~FRnE~ 335 (585)
T PTZ00417 259 IINYLRNFLNDRGFIEVETPTMNLVAGGANARPFI-THHNDLDLDLYLRIATELPLKMLIVG--GIDKVYEIGKVFRNEG 335 (585)
T ss_pred HHHHHHHHHHHCCeEEEeCCeeeccCCcccceeEE-ecccCCCcceEEeecHHHHHHHHHHh--CCCCEEEEcccccCCC
Confidence 99999999999999999999999987766778996 43322 2457888888777666554 5899999999999999
Q ss_pred CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCc------------chhccccccccchhhhhhhhhhc
Q 012529 232 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK------------EDMDFFNTWIEKGIIDRLSTVAE 299 (461)
Q Consensus 232 ~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~------------~~l~~~~~~~~~~~~~~l~~~~~ 299 (461)
++ +||||||||||||++|+||+|+|+++|+||++++..+.+..+ .++++..+|...++.+.+++.++
T Consensus 336 ~~-~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~~~~i~~~~pf~rit~~ea~~~~~g 414 (585)
T PTZ00417 336 ID-NTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELEKLTN 414 (585)
T ss_pred CC-CCccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHHhcCcceeeecccccccccccccCCCCceeccHHHHHHHHhC
Confidence 96 799999999999999999999999999999999998875432 23445556777778888888877
Q ss_pred CCCc-----cccHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceec
Q 012529 300 RDFV-----QLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 374 (461)
Q Consensus 300 ~~~~-----~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~ 374 (461)
.++. ..+++++++++++.|++++....||..++..++.++.+++.+ +|+||+|||.+++|||+...+|++.++|
T Consensus 415 ~~~~~~~~~~~~~~el~~~l~~~g~~~~~~~~~~~~l~~l~e~~vE~~l~~-~PtFI~dyP~~~sPLak~~~~dp~v~eR 493 (585)
T PTZ00417 415 TKLEQPFDSPETINKMINLIKENKIEMPNPPTAAKLLDQLASHFIENKYPN-KPFFIIEHPQIMSPLAKYHRSKPGLTER 493 (585)
T ss_pred CCccccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhhCC-CcEEEECCChhhCchhhhcCCCCCeEEe
Confidence 6653 258899999999988776555567778888888888776653 6999999999999999766667789999
Q ss_pred cccccCCceeeechhhhcccHHHHHHHHH------HcCCCccc--H-HHHHHHhccCCCCCccccccHHHHHHHHcCCCC
Q 012529 375 MDMLVPRIGELIGGSQREERLEYLEGRLD------ELKLNRDS--Y-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVEN 445 (461)
Q Consensus 375 fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~------~~~~~~~~--~-~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~ 445 (461)
||||++|+ ||+||+++++|+.+|+++++ +.| +++. + ++||+|++||||||||||||||||+|++||.+|
T Consensus 494 FELfi~G~-EiangysELnDp~eQr~Rf~~q~~~r~~g-~~e~~~~Dedfl~AleyGmPPtgG~GiGIDRLvMlltg~~s 571 (585)
T PTZ00417 494 LEMFICGK-EVLNAYTELNDPFKQKECFSAQQKDREKG-DAEAFQFDAAFCTSLEYGLPPTGGLGLGIDRITMFLTNKNC 571 (585)
T ss_pred EEeEECCE-EEccCcchhcCHHHHHHHHHHHHHHHHcC-CCcccccHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCcc
Confidence 99999997 99999999999999988664 335 4444 3 339999999999999999999999999999999
Q ss_pred ccccccCCCCCC
Q 012529 446 IRDAIPFPRTPG 457 (461)
Q Consensus 446 Irdv~~FPr~~~ 457 (461)
||||++||+++.
T Consensus 572 IrdVi~FP~~r~ 583 (585)
T PTZ00417 572 IKDVILFPTMRP 583 (585)
T ss_pred hheeecCCCCCC
Confidence 999999999864
|
|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-88 Score=715.07 Aligned_cols=437 Identities=16% Similarity=0.209 Sum_probs=338.3
Q ss_pred CCccccceeeeccccCCCcC---CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc----chhhh-
Q 012529 4 KVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQV- 75 (461)
Q Consensus 4 ~~~~~~~~~~i~~i~~~~~~---~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~----~~~~~- 75 (461)
.+++|.++++++++.+.+++ +....++.|+|+|||+++|.+||++|++|||++|. ||||++++.. .+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~Gk~~F~~LrD~~G~--IQvv~~~~~~~~~~~~~~~~ 156 (659)
T PTZ00385 79 AYSSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIGKIIFVTIRSNGNE--LQVVGQVGEHFTREDLKKLK 156 (659)
T ss_pred ccccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccCCeEEEEEEECCce--EEEEEECCccCCHHHHHHHH
Confidence 57889999999999887642 11223557999999999999999999999999975 9999987642 24444
Q ss_pred hhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCC-CCCC-C--ccc---CChhhhhcCccccCC-CHHHHHH
Q 012529 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPI-Q--KKR---VSREFLRTKAHLRPR-TNTFGAV 147 (461)
Q Consensus 76 ~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~-~~Pl-~--~~~---~~~~~~r~~r~l~~R-~~~~~~~ 147 (461)
+. |+.||+|.|+|++.+++.+ ++||+++++++||++.. ..|+ + .+. .+.++..++||||+| ++.++++
T Consensus 157 ~~--l~~gdiV~V~G~v~~t~~G--eleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~i 232 (659)
T PTZ00385 157 VS--LRVGDIIGADGVPCRMQRG--ELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIET 232 (659)
T ss_pred hC--CCCCCEEEEEEEEEecCCc--eEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHHH
Confidence 45 9999999999999998754 89999999999999642 2222 2 232 255666699999996 6779999
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeec-CCCcccccCCccccCCCccccCcCcceeEEEecc
Q 012529 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL-IPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPT 226 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~-~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~ 226 (461)
|++||+|+++||+||.++||+||+||+|+++++|+++++|.+.+. .....+|.+||++.++++..+ |++||||||||
T Consensus 233 fr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLivg--G~erVyeIg~~ 310 (659)
T PTZ00385 233 IKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHNANAMDLFLRVAPELHLKQCIVG--GMERIYEIGKV 310 (659)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEeecccCCCCEEecCChHHHHHHHhhc--ccCCEEEEece
Confidence 999999999999999999999999999999999999999976432 123467888887666555443 59999999999
Q ss_pred cccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCcccc
Q 012529 227 FRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLS 306 (461)
Q Consensus 227 FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it 306 (461)
||||+++ .||||||||||||++|.||+|+|+++|+||++++..+.+.. .+.+... ...+....+ -+..||+|+|
T Consensus 311 FRnE~~~-~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~~~v~g~~--~~~~~~~-~~~g~~~~i--~~~~Pf~Rit 384 (659)
T PTZ00385 311 FRNEDAD-RSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLAMRVNGTT--VVQIYPE-NAHGNPVTV--DLGKPFRRVS 384 (659)
T ss_pred ecCCCCC-CCccccccceeeeeecCCHHHHHHHHHHHHHHHHHHhcCCe--eEEeecc-ccCCCcccc--cCCCCceEEe
Confidence 9999996 89999999999999999999999999999999999987643 2222100 000000000 1223566666
Q ss_pred HHHHH-HH-----------------------HHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccc
Q 012529 307 YTDAI-EL-----------------------LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 362 (461)
Q Consensus 307 ~~ea~-~~-----------------------l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~ 362 (461)
+.+++ +. +++.|++++....+|..++..++.++.+.+ . +|+||+|||.+++||+
T Consensus 385 ~~d~~~e~~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe~~ve~~l-~-qPtFI~dyP~e~sPLa 462 (659)
T PTZ00385 385 VYDEIQRMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFFITDRV-V-EPTFVMDHPLFMSPLA 462 (659)
T ss_pred HHHHHHHHhCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHHHHHHHhh-C-CcEEEeCCccccCccc
Confidence 33332 22 222232222111223344444566555544 4 7999999999999998
Q ss_pred cccCCCccceeccccccCCceeeechhhhcccHHHHHHHHH-----HcCCCcccH---HHHHHHhccCCCCCccccccHH
Q 012529 363 MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD-----ELKLNRDSY---WWYLDLRHYGSVPHAGFGLGFE 434 (461)
Q Consensus 363 ~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~-----~~~~~~~~~---~~yl~a~~~G~pP~gG~giGid 434 (461)
+...+|++.++|||||++|+ ||+||++|+||+..|+++++ ..+.+++.+ +|||+|++||||||||||||||
T Consensus 463 k~~~~dp~~teRFELfi~G~-EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~DedfL~AleyGmPPtgG~GIGID 541 (659)
T PTZ00385 463 KEQVSRPGLAERFELFVNGI-EYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDETFLKSLQVGLPPTAGWGMGID 541 (659)
T ss_pred ccCCCCCCeEEEEEEEeCCe-EeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccHHHHHHHHHcCCCCCCceEEcHH
Confidence 76666778999999999996 99999999999999999993 445666655 8899999999999999999999
Q ss_pred HHHHHHcCCCCccccccCCCCCC
Q 012529 435 RLVQFATGVENIRDAIPFPRTPG 457 (461)
Q Consensus 435 RLvm~l~g~~~Irdv~~FPr~~~ 457 (461)
||+|++||.+|||||++||....
T Consensus 542 RLvMlltg~~sIReVilFP~mr~ 564 (659)
T PTZ00385 542 RALMLLTNSSNIRDGIIFPLLRQ 564 (659)
T ss_pred HHHHHHcCCcchhheecCccccc
Confidence 99999999999999999998764
|
|
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-88 Score=680.71 Aligned_cols=439 Identities=21% Similarity=0.302 Sum_probs=372.6
Q ss_pred CCccccceeeeccccCCCcC----CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhh-h
Q 012529 4 KVGEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQ-V 75 (461)
Q Consensus 4 ~~~~~~~~~~i~~i~~~~~~----~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~-~ 75 (461)
=.+.|.+++.+.++.+.+.+ .......+|+|+|||+++|.+||++|++|+|++| +||++++++. ..|+. .
T Consensus 32 yp~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK~~F~~i~d~~g--kiQ~yi~k~~~~~~~~~~~~ 109 (502)
T COG1190 32 YPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGKASFADLQDGSG--KIQLYVNKDEVGEEVFEALF 109 (502)
T ss_pred CCCcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccCceeEEEEecCCc--eEEEEEeccccchhhHHHHH
Confidence 35678889999999876532 1112233599999999999999999999999997 4999999875 24554 4
Q ss_pred hhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCChh---hhhcCccccCCCH-HHHHHHHHH
Q 012529 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE---FLRTKAHLRPRTN-TFGAVARVR 151 (461)
Q Consensus 76 ~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~~---~~r~~r~l~~R~~-~~~~~l~~R 151 (461)
+. ++.||+|.|+|.+.+|+++ +++|.|+++++|+||+ .|+|.|.|++. ..-+.||+|+-.+ ..+.+|..|
T Consensus 110 ~~--~dlGDiigv~G~~~~T~~G--elSv~v~~~~lLsKsL--~pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~R 183 (502)
T COG1190 110 KK--LDLGDIIGVEGPLFKTKTG--ELSVSVEELRLLSKSL--RPLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIKR 183 (502)
T ss_pred hc--cccCCEEeeeeeeeecCCC--ceEEEEEEEeeecccC--CCCChhhcCCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55 8999999999999999877 8999999999999998 68888988773 3336899998865 699999999
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCC--cccccCCccccCCCccccCcCcceeEEEeccccc
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS--SREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRA 229 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~--~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~ 229 (461)
|+|+++||+||.++||+||+||+|+...+|++|.||. |+++.. +.++..+|+..|+++..| ||+||||||++|||
T Consensus 184 s~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~-ThhNald~dlyLRIApELyLKRliVG--G~erVfEIgr~FRN 260 (502)
T COG1190 184 SKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFI-THHNALDMDLYLRIAPELYLKRLIVG--GFERVFEIGRNFRN 260 (502)
T ss_pred HHHHHHHHHHHHHCCCeEeccccccccCCCcccccce-eeecccCCceEEeeccHHHHHHHHhc--Cchhheeecccccc
Confidence 9999999999999999999999999999999999995 777653 245566788888888777 49999999999999
Q ss_pred CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcC-----cchhccccccccchhhhhhhhhhcCC-Cc
Q 012529 230 ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC-----KEDMDFFNTWIEKGIIDRLSTVAERD-FV 303 (461)
Q Consensus 230 E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~-----~~~l~~~~~~~~~~~~~~l~~~~~~~-~~ 303 (461)
|+. +.||||||||||+|+||+||+|+|+++|+|++++++.+.+.. ...+++.++|.+..+.+.+++..+.. +.
T Consensus 261 EGi-d~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~pf~ri~m~dal~e~~g~~~~~ 339 (502)
T COG1190 261 EGI-DTTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITMVDALKEYLGVDFDD 339 (502)
T ss_pred CCC-ccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEecCCCeeeeehHHHHHHHhCccccc
Confidence 999 589999999999999999999999999999999999998743 25577788898999999998888873 45
Q ss_pred cccHHHHHHHHHHhcccccccc--cccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceeccccccCC
Q 012529 304 QLSYTDAIELLIKAKKKFEFLV--KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR 381 (461)
Q Consensus 304 ~it~~ea~~~l~~~~~~~~~~~--~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G 381 (461)
..+.++|.++++++++...... .+|..++..+|..+.+++. +|+||+|||.++||++++++.+++.++|||||++|
T Consensus 340 ~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~vE~~li--qPTFv~d~P~eiSPLak~~~~~p~~teRFElfi~g 417 (502)
T COG1190 340 LFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAKLI--QPTFVTDHPVEISPLAKRHRSNPGLTERFELFIGG 417 (502)
T ss_pred cCCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHHhhhhhc--CCceeecCccccCccccCCCCCcchhhhheeeecc
Confidence 6678899999999887654332 2455677778886555444 69999999999999998888888999999999999
Q ss_pred ceeeechhhhcccHHHHHHHHHH------cCCCccc-H-HHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCC
Q 012529 382 IGELIGGSQREERLEYLEGRLDE------LKLNRDS-Y-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453 (461)
Q Consensus 382 ~~Ei~~g~~r~~~~~~~~~~~~~------~~~~~~~-~-~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FP 453 (461)
. ||+||+.+.||+..|.++|.+ .|-+.+. + ++|++|++||||||||+|||||||||+|||++||||||+||
T Consensus 418 ~-EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmPPTgG~GiGIDRLvMllT~~~sIRdVilFP 496 (502)
T COG1190 418 K-EIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTGGLGIGIDRLVMLLTNSPSIRDVILFP 496 (502)
T ss_pred E-EeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCCCCCCccccHHHHHHHHcCCCchhheeccc
Confidence 6 999999999999999999864 3444333 3 67999999999999999999999999999999999999999
Q ss_pred CCCC
Q 012529 454 RTPG 457 (461)
Q Consensus 454 r~~~ 457 (461)
-...
T Consensus 497 ~mr~ 500 (502)
T COG1190 497 AMRP 500 (502)
T ss_pred ccCC
Confidence 7653
|
|
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-87 Score=672.09 Aligned_cols=407 Identities=25% Similarity=0.406 Sum_probs=327.7
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCC-C-cchhhhhhcCCCCCcEEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-A-EGYDQVKSGLITTGASIW 87 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~-~-~~~~~~~~~~l~~g~~V~ 87 (461)
|+|+|.+|... ++|++|+++|||++.|++|+++||||||.+|+ +|||++++ . ..|+.+.. |+.|++|.
T Consensus 2 Rt~~cg~l~~~------~vG~~V~L~GWV~r~Rd~GgliFiDLRDr~Gi--vQvv~~~~~~~~~~~~a~~--lr~E~vi~ 71 (585)
T COG0173 2 RTHYCGELRES------HVGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFVIQ 71 (585)
T ss_pred CceeccccCHH------HCCCEEEEEeeeeeccccCCeEEEEcccCCCe--EEEEECCccCHHHHHHHHh--cCceEEEE
Confidence 68999999985 89999999999999999999999999999987 99999984 2 34677878 99999999
Q ss_pred EEeeEeecCC-------CCccEEEEEeEEEEeccCCCCCCCCccc--CChhhhh-cCccccCCCHHHHHHHHHHHHHHHH
Q 012529 88 IQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR--VSREFLR-TKAHLRPRTNTFGAVARVRNALAYA 157 (461)
Q Consensus 88 v~G~~~~~~~-------~~~~~el~~~~i~vl~~~~~~~Pl~~~~--~~~~~~r-~~r~l~~R~~~~~~~l~~Rs~i~~~ 157 (461)
|+|+|...+. .++++||++++|+|||+|.+ +|++..+ ...+.+| +|||||||++.++..+++||+++.+
T Consensus 72 V~G~V~~R~e~~~N~~l~TGeiEv~a~~i~vln~s~~-lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~ 150 (585)
T COG0173 72 VTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKT-LPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKA 150 (585)
T ss_pred EEEEEEecCccccCCCCCcceEEEEeeeEEEEecCCC-CCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 9999988765 35689999999999999975 5655433 3444555 9999999999999999999999999
Q ss_pred HHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccc------cCcCcceeEEEecccccCC
Q 012529 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKD------GLIDWSQVYTFGPTFRAEN 231 (461)
Q Consensus 158 iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~------~~~~~~rVfeI~~~FR~E~ 231 (461)
+|+||+++||+||+||+|+.|++|||.+ |.|+... +...||+|||++| |.+||+|+|||++|||+|+
T Consensus 151 iR~~ld~~gF~EiETPiLtkSTPEGARD-fLVPSRv------~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRDED 223 (585)
T COG0173 151 IRNFLDDQGFLEIETPILTKSTPEGARD-FLVPSRV------HPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDED 223 (585)
T ss_pred HHHHHhhcCCeEeecCccccCCCccccc-ccccccc------CCCceeecCCCHHHHHHHHHHhcccceeeeeeeecccc
Confidence 9999999999999999999999999999 7776432 2345788888875 5679999999999999999
Q ss_pred CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHH
Q 012529 232 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 311 (461)
Q Consensus 232 ~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~ 311 (461)
.+.+|+ |||||+|+||+|.+-+|+|+++|+|++++++.+.+.. +..||+||||+||+
T Consensus 224 lRaDRQ-PEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~~~~i~----------------------l~~pFprmtY~eAm 280 (585)
T COG0173 224 LRADRQ-PEFTQIDLEMSFVDEEDVMELIEKLLRYVFKEVKGIE----------------------LKTPFPRMTYAEAM 280 (585)
T ss_pred cccccC-CcceeEeEEeecCCHHHHHHHHHHHHHHHHHHhcCCc----------------------cCCCcccccHHHHH
Confidence 999999 9999999999999999999999999999999876431 22344455555444
Q ss_pred HHH-------------------------------------------------------------HHhcccccccccccc-
Q 012529 312 ELL-------------------------------------------------------------IKAKKKFEFLVKWGC- 329 (461)
Q Consensus 312 ~~l-------------------------------------------------------------~~~~~~~~~~~~~g~- 329 (461)
+.+ +..|.+--.-+.+.+
T Consensus 281 ~~YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~~ 360 (585)
T COG0173 281 RRYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEED 360 (585)
T ss_pred HHhCCCCCcccCCceehhHHHHhcCCCcceehhhhhcCCeEEEEEcCCccccCHHHHHHHHHHHHHcCCCceEEEEEecC
Confidence 321 111000000000000
Q ss_pred cCChHhhh-----------------------------------------------chhhhcccCCCeeeeeCCcc-----
Q 012529 330 DLQSEHER-----------------------------------------------YLTEEAFGGCPVIVSDYPKE----- 357 (461)
Q Consensus 330 ~l~~~~e~-----------------------------------------------~l~e~~~~~~p~~i~~~P~~----- 357 (461)
.+.....+ -|.++- ...++||+|||..
T Consensus 361 ~~~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A~~~~~~~~~lGalR~~l~~~l~li~~~-~~~f~WVvDFPlfE~~ee 439 (585)
T COG0173 361 GLKGPIAKFLSEEILEELIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKELGLIDKD-QFKFLWVVDFPLFEWDEE 439 (585)
T ss_pred CccchHHHhcCHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHHhCCCCcc-cceEEEEEecCccCCccc
Confidence 00000000 011110 1269999999993
Q ss_pred -------CCccccccCCCc-------c--ceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcc----cHHHHHH
Q 012529 358 -------IKAFYMRQNDDG-------R--TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLD 417 (461)
Q Consensus 358 -------~~pf~~~~~~~~-------~--~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~ 417 (461)
++||.|+...+. . .+..|||++||+ ||+|||.|+|+++.|.+.|+..|++++ .++.+|+
T Consensus 440 ~~~~~a~HHPFT~P~~~~~~~l~~~p~~~~a~aYDlVlNG~-ElggGSiRIh~~eiQ~~vF~~lg~~~eea~ekFGFll~ 518 (585)
T COG0173 440 EGRYVAAHHPFTMPKPEDLELLEADPESVRARAYDLVLNGY-ELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLE 518 (585)
T ss_pred cCceecccCCCCCCCccchhhhhcCHHHhhhhhccEEeccE-eeccceeeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 789998765432 1 356899999998 999999999999999999999999987 5788999
Q ss_pred HhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCC
Q 012529 418 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 459 (461)
Q Consensus 418 a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~ 459 (461)
|++||+|||||+|+|||||+|+|+|.+||||||+||++.+..
T Consensus 519 Af~yGaPPHgGiA~GlDRlvmll~g~~sIReVIAFPKt~~a~ 560 (585)
T COG0173 519 AFKYGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKTQQAA 560 (585)
T ss_pred HHhcCCCCCcceeccHHHHHHHHcCCCchhheeecCCCcccc
Confidence 999999999999999999999999999999999999987653
|
|
| >KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-87 Score=647.64 Aligned_cols=424 Identities=26% Similarity=0.420 Sum_probs=367.4
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc---c---hhhhhhcCCCCCc
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---G---YDQVKSGLITTGA 84 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~---~---~~~~~~~~l~~g~ 84 (461)
.+.+.||.. +..++.|.|+|||+..|.+||++|+.||++.+ ++||++..+.. . .+-++. |+.||
T Consensus 70 ~~~v~dl~~------~~~~~~V~vRgrVhtsr~~GK~~FlvLRq~~~--tVQ~~~~~~~~~~isk~Mvkf~~~--is~ES 139 (533)
T KOG0556|consen 70 LTDVSDLDE------SNDGSEVLVRGRVHTSRLKGKLCFLVLRQQGS--TVQCLVAVNEDGTISKQMVKFAGS--ISKES 139 (533)
T ss_pred eeehhhhhh------hcCCceEEEEEEEeeccccceEEEEEEeccCc--eEEEEEEcCCCchHHHHHHHHHhh--cCcce
Confidence 345666655 36789999999999999999999999999985 59999976543 1 111445 99999
Q ss_pred EEEEEeeEeecC-----CCCccEEEEEeEEEEeccCCCCCCCCcccCC--------------------hhhhhcCccccC
Q 012529 85 SIWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQKKRVS--------------------REFLRTKAHLRP 139 (461)
Q Consensus 85 ~V~v~G~~~~~~-----~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~--------------------~~~~r~~r~l~~ 139 (461)
+|.|.|+|.+.+ +.+|++||++.+|.++|.+++.+|++.++.+ .++..+||.||+
T Consensus 140 iV~v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDL 219 (533)
T KOG0556|consen 140 IVDVRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLDL 219 (533)
T ss_pred EEEEEEEEecCCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeeec
Confidence 999999998864 2568999999999999999988998754322 123448999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCcccc--CcCc
Q 012529 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG--LIDW 217 (461)
Q Consensus 140 R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~--~~~~ 217 (461)
|++..+++||+++.+..++|+||..+||+|||||.|.++++||++.+|.|+|+.. .+++++||. |+ +|| .++|
T Consensus 220 RtptnqAiFriq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v~Yfk~-~A~LAQSPQ--Ly--KQMaI~gdf 294 (533)
T KOG0556|consen 220 RTPTNQAIFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRVSYFKQ-KAYLAQSPQ--LY--KQMAICGDF 294 (533)
T ss_pred ccccchheeehHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEEEeccC-cchhhcChH--HH--HHHHHhcch
Confidence 9999999999999999999999999999999999999999999999999999987 477888863 32 333 3589
Q ss_pred ceeEEEecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhh
Q 012529 218 SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLST 296 (461)
Q Consensus 218 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 296 (461)
+|||+||||||||+|+|.||+.||+.||+||+|. .|+++|+.+.+++.++++.+.+.++++|+..+++++.+-.+-
T Consensus 295 ~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery~~Eie~Vr~qyp~e~fkf--- 371 (533)
T KOG0556|consen 295 ERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERYAKEIETVRKQYPFEPFKF--- 371 (533)
T ss_pred hheeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc---
Confidence 9999999999999999999999999999999998 599999999999999999999999999988877664332221
Q ss_pred hhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchh----hhcccCCCeeeeeCCccCCccccccCCCc-cc
Q 012529 297 VAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT----EEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RT 371 (461)
Q Consensus 297 ~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~----e~~~~~~p~~i~~~P~~~~pf~~~~~~~~-~~ 371 (461)
+ .+..+++|.|++++|++.|.+.. .-+||+++.|+.|. +++.. ++.++.+||..++|||+++++++ .+
T Consensus 372 -~-~~~lrl~~~e~v~mLreaGvE~g----~~dDlsTe~Ek~LG~lV~eky~t-dfyildkyP~avRPFYTmpd~~~p~y 444 (533)
T KOG0556|consen 372 -L-EPPLRLTFKEGVAMLREAGVEMG----DEDDLSTESEKKLGQLVREKYDT-DFYILDKYPLAVRPFYTMPDPENPRY 444 (533)
T ss_pred -C-CCceEeehHHHHHHHHHcCcccC----CccccCChhHHHHHHHHHHHhCC-cEEEEccCccccccccccCCCCCCCc
Confidence 1 35568999999999999987632 23589999999875 44544 79999999999999999887655 58
Q ss_pred eeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCcccccc
Q 012529 372 VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIP 451 (461)
Q Consensus 372 ~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~ 451 (461)
+++||++++| .||.+|.||+|+++.|.++++++|+++..+..|+|+++||+|||||+|||+||++|+++|+.|||..++
T Consensus 445 SnSyD~fmRG-eEIlSGAQRIhdpe~L~era~~hGid~~~i~~YidsFryG~PPHaGgGIGLERvvmlyl~L~nIR~~Sl 523 (533)
T KOG0556|consen 445 SNSYDFFMRG-EEILSGAQRIHDPELLVERAKEHGIDPSKISTYIDSFRYGAPPHAGGGIGLERVVMLYLGLNNIRKTSL 523 (533)
T ss_pred ccchhheech-hhhhccccccCCHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHhcCCcchhhcc
Confidence 9999999999 699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 012529 452 FPRTPGSVE 460 (461)
Q Consensus 452 FPr~~~~~~ 460 (461)
|||+|+|+.
T Consensus 524 FPRDPkRL~ 532 (533)
T KOG0556|consen 524 FPRDPKRLT 532 (533)
T ss_pred CCCCccccC
Confidence 999999973
|
|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-86 Score=696.25 Aligned_cols=428 Identities=23% Similarity=0.338 Sum_probs=324.4
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~ 89 (461)
++|+|.++... +.|++|+|+|||+++|.+|+++|++|||++|. ||||++++...++.++. |+.||+|.|+
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~Gkl~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~--L~~esvV~V~ 71 (583)
T TIGR00459 2 RTHYCGQLRTE------HLGQTVTLAGWVNRRRDLGGLIFIDLRDRSGI--VQVVCDPDADALKLAKG--LRNEDVVQVK 71 (583)
T ss_pred CceeHhhcchh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCcc--EEEEEeCCHHHHHHHhc--CCCCCEEEEE
Confidence 67889999764 68999999999999999999999999999985 99999876444666777 9999999999
Q ss_pred eeEeecC-------CCCccEEEEEeEEEEeccCCCCCCCCcc-cCChhhhh-cCccccCCCHHHHHHHHHHHHHHHHHHH
Q 012529 90 GNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLR-TKAHLRPRTNTFGAVARVRNALAYATHK 160 (461)
Q Consensus 90 G~~~~~~-------~~~~~~el~~~~i~vl~~~~~~~Pl~~~-~~~~~~~r-~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ 160 (461)
|+|.+++ ..++++||.+++++|||+|. .+|++.. ..+.+.+| ++||||+|++.++++|++||++++++|+
T Consensus 72 G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~~P~~~~~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ 150 (583)
T TIGR00459 72 GKVSARPEGNINRNLDTGEIEILAESITLLNKSK-TPPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRN 150 (583)
T ss_pred EEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCCcccccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 9998765 34568999999999999996 4677653 23444555 8999999999999999999999999999
Q ss_pred HhhhCCcEEEecceeecCCCCCCCcceeeeecC-CCcc-cccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCc
Q 012529 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLI-PSSR-EAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHL 238 (461)
Q Consensus 161 ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~-~~~~-~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl 238 (461)
||.++||+||+||+|+++++||+++ |.+.+.. .... .|.+||.+.+..+ +.+|++||||||||||||++++.||
T Consensus 151 ff~~~gFiEVeTP~L~~s~~eGar~-f~vp~~~~~~~~y~L~qSpQlykq~l--~v~G~ervfqI~~~FR~E~~~t~r~- 226 (583)
T TIGR00459 151 FLDQQGFLEIETPMLTKSTPEGARD-YLVPSRVHKGEFYALPQSPQLFKQLL--MVSGVDRYYQIARCFRDEDLRADRQ- 226 (583)
T ss_pred HHHHCCCEEEECCeeccCCCCCCcc-eeeeeecCCCceeecCCCHHHHHHHH--HhcccCcEEEEcceeeCCCCCCCCC-
Confidence 9999999999999999999999876 6665431 2222 3666654332222 3346999999999999999998888
Q ss_pred cccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhh--------------------
Q 012529 239 AEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA-------------------- 298 (461)
Q Consensus 239 ~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-------------------- 298 (461)
||||||||||+|.|++|+|+++|+||+++++.+.+.. +..+|.+.++.++++++-
T Consensus 227 pEFT~le~E~af~d~~dvm~~~E~li~~v~~~v~~~~-----~~~pf~r~ty~ea~~~yGsDkPDlR~~~~~~d~~~~~~ 301 (583)
T TIGR00459 227 PEFTQIDMEMSFMTQEDVMELIEKLVSHVFLEVKGID-----LKKPFPVMTYAEAMERYGSDKPDLRFPLELIDVTDLFK 301 (583)
T ss_pred cccCcceeeecCCCHHHHHHHHHHHHHHHHHHHhCCC-----CCCCceEEEHHHHHHHHCCCCCccccCcccccHHHhhc
Confidence 9999999999999999999999999999999886521 111111111111111110
Q ss_pred cC-------------------------CCccccHHHHHHHHHHhccc------cccccccc---ccCChH----------
Q 012529 299 ER-------------------------DFVQLSYTDAIELLIKAKKK------FEFLVKWG---CDLQSE---------- 334 (461)
Q Consensus 299 ~~-------------------------~~~~it~~ea~~~l~~~~~~------~~~~~~~g---~~l~~~---------- 334 (461)
+. .+.+-..++..++.+..|.+ ++....++ .-+...
T Consensus 302 ~~~f~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (583)
T TIGR00459 302 DSEFKVFSNLINDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLKVNEDGINSPIKKFLDEKKGKILLERTD 381 (583)
T ss_pred cCCcchhhhhhccCCeEEEEEecCCcCccCHhHHHHHHHHHHHcCCCcceEEEEcCCcCCCchhhhcCHHHHHHHHHHhC
Confidence 00 11111222223333333322 11100000 000000
Q ss_pred ----------------------------hh-hchhhhcccCCCeeeeeCCcc-----------CCccccccCCCcc----
Q 012529 335 ----------------------------HE-RYLTEEAFGGCPVIVSDYPKE-----------IKAFYMRQNDDGR---- 370 (461)
Q Consensus 335 ----------------------------~e-~~l~e~~~~~~p~~i~~~P~~-----------~~pf~~~~~~~~~---- 370 (461)
.+ .-+++... .+|+||+|||.. ++||+++..+|..
T Consensus 382 ~~~gd~~~~~a~~~~~~~~~lG~lr~~l~~~~~l~~~~~-~~~~wV~dfPlfe~~~~~~~~a~hhPfT~p~~~d~~~l~~ 460 (583)
T TIGR00459 382 AQNGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPDL-FSFLWVVDFPMFEKDKEGRLCAAHHPFTMPKDEDLENLEA 460 (583)
T ss_pred CCCCCEEEEecCcchhHHHHHHHHHHHHHHHcCCcCCCC-ceEEEEEeCCCccccCCCceeeeECCCCCCCCCChhhhhc
Confidence 00 01222211 269999999997 9999987665544
Q ss_pred -----ceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCccc----HHHHHHHhccCCCCCccccccHHHHHHHHc
Q 012529 371 -----TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFAT 441 (461)
Q Consensus 371 -----~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~----~~~yl~a~~~G~pP~gG~giGidRLvm~l~ 441 (461)
.+.+|||++||+ ||+|||.|+||++.|++.|+..|+++++ +++||+|++||+|||||+|||||||+|+||
T Consensus 461 ~p~~~~~~~yDLvlnG~-ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ll~Al~yG~PPhgG~alG~DRlvmlLt 539 (583)
T TIGR00459 461 APEEALAEAYDLVLNGV-ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMMLLT 539 (583)
T ss_pred ChhhhhhheeeEEEece-EecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCcCceeccHHHHHHHHc
Confidence 678999999997 9999999999999999999999997763 799999999999999999999999999999
Q ss_pred CCCCccccccCCCCCCCC
Q 012529 442 GVENIRDAIPFPRTPGSV 459 (461)
Q Consensus 442 g~~~Irdv~~FPr~~~~~ 459 (461)
|.+||||||+||++....
T Consensus 540 ~~~sIRDVIaFPKt~~g~ 557 (583)
T TIGR00459 540 GTDNIRDVIAFPKTTAAA 557 (583)
T ss_pred CCCchhheeecCCCCCCc
Confidence 999999999999998754
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. |
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-84 Score=728.37 Aligned_cols=424 Identities=19% Similarity=0.227 Sum_probs=340.5
Q ss_pred CCccccceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc---chhhh-hhcC
Q 012529 4 KVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV-KSGL 79 (461)
Q Consensus 4 ~~~~~~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~---~~~~~-~~~~ 79 (461)
-.++|.++|+++++.+. ..|++|+|+|||+++|.+||++|++|+|++| .||||++++.. .+... +.
T Consensus 632 yp~~~~~~~~~~~~~~~------~~~~~V~v~Grv~~~R~~G~~~F~~lrD~~g--~iQ~v~~~~~~~~~~~~~~~~~-- 701 (1094)
T PRK02983 632 YPVGVPPTHTVAEALDA------PTGEEVSVSGRVLRIRDYGGVLFADLRDWSG--ELQVLLDASRLEQGSLADFRAA-- 701 (1094)
T ss_pred CCCCCcCccCHHHHHHh------cCCCEEEEEEEEEEEeeCCCeEEEEEEeCCe--eEEEEEECCccchhhHHHHHhc--
Confidence 34678999999999864 6788999999999999999999999999996 49999987642 23333 34
Q ss_pred CCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCCh---hhhhcCccccCC-CHHHHHHHHHHHHHH
Q 012529 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPR-TNTFGAVARVRNALA 155 (461)
Q Consensus 80 l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~---~~~r~~r~l~~R-~~~~~~~l~~Rs~i~ 155 (461)
|+.||+|.|+|++.+++++ ++||.+++++++++|. .|+|.+.+++ +...++||||+| ++.++++|++||+|+
T Consensus 702 l~~gd~V~v~G~v~~t~~g--e~ei~~~~i~ll~k~~--~plP~k~~~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~i~ 777 (1094)
T PRK02983 702 VDLGDLVEVTGTMGTSRNG--TLSLLVTSWRLAGKCL--RPLPDKWKGLTDPEARVRQRYLDLAVNPEARDLLRARSAVV 777 (1094)
T ss_pred CCCCCEEEEEEEEEEcCCC--CEEEEEeEEEEEeccC--cCCCCccccCCChhhcchhhhhhhhcCHHHHHHHHHHHHHH
Confidence 9999999999999998865 7999999999999997 4666554433 334489999997 578999999999999
Q ss_pred HHHHHHhhhCCcEEEecceeecCCCCCCCcceee--eecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCC
Q 012529 156 YATHKFFQENGFIWISSPIITASDCEGAGEQFCV--TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSN 233 (461)
Q Consensus 156 ~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v--~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~ 233 (461)
++||+||.++||+||+||+|+++.||++++||.+ ++++. +.+|.+||++.++++..+ |++||||||||||||+++
T Consensus 778 ~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t~~~~~~~-~~yLriSPELylKrLivg--G~erVFEIg~~FRnE~~~ 854 (1094)
T PRK02983 778 RAVRETLVARGFLEVETPILQQVHGGANARPFVTHINAYDM-DLYLRIAPELYLKRLCVG--GVERVFELGRNFRNEGVD 854 (1094)
T ss_pred HHHHHHHHHCCCEEEeCCEeeccCCCcccceeEeeecCCCc-cchhhcChHHHHHHHHhc--ccCceEEEcceecCCCCC
Confidence 9999999999999999999999999888999964 34443 467888887766655544 599999999999999996
Q ss_pred CCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHH
Q 012529 234 TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL 313 (461)
Q Consensus 234 t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~ 313 (461)
.||||||||||+|++|.||+|+|+++|+||+++++.+.+... +...+. .. ...+..++.||+++||.||++.
T Consensus 855 -~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v~~~~~--~~~~~~----~~-~~~~i~~~~pf~rit~~eai~~ 926 (1094)
T PRK02983 855 -ATHNPEFTLLEAYQAHADYDTMRDLTRELIQNAAQAAHGAPV--VMRPDG----DG-VLEPVDISGPWPVVTVHDAVSE 926 (1094)
T ss_pred -CCccccccchhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCcE--EeeCCc----cc-cccccccCCCceEEEHHHHHHH
Confidence 699999999999999999999999999999999999875432 111000 00 0000114568889999998863
Q ss_pred H------------------HHhcccccccccccc-cCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccceec
Q 012529 314 L------------------IKAKKKFEFLVKWGC-DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 374 (461)
Q Consensus 314 l------------------~~~~~~~~~~~~~g~-~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~ 374 (461)
. ++.+++.+ ..|+. ++..+.+..++++.+. +|+||+|||.+++||||+.++|++.++|
T Consensus 927 ~~g~~~~~~~~~~~l~~~~~~~~i~~~--~~~~~~~l~~~l~~~~ve~~~~-~P~Fv~dyP~~~spla~~~~~~p~~~er 1003 (1094)
T PRK02983 927 ALGEEIDPDTPLAELRKLCDAAGIPYR--TDWDAGAVVLELYEHLVEDRTT-FPTFYTDFPTSVSPLTRPHRSDPGLAER 1003 (1094)
T ss_pred HhCCCCCCCCCHHHHHHHHHHcCCCCC--CCCCHhHHHHHHHHHHHHhhcC-CCEEEECCCcccccccccCCCCCCeeEE
Confidence 2 22222221 12321 2223333444555555 8999999999999999887777889999
Q ss_pred cccccCCceeeechhhhcccHHHHHHHHHH-----cCCCcccH---HHHHHHhccCCCCCccccccHHHHHHHHcCCCCc
Q 012529 375 MDMLVPRIGELIGGSQREERLEYLEGRLDE-----LKLNRDSY---WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 446 (461)
Q Consensus 375 fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-----~~~~~~~~---~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~I 446 (461)
||||++|+ ||+||++|.||+.+|++++++ .+.|++.+ +|||+|++||||||||||||||||+|++||. ||
T Consensus 1004 FdL~i~G~-Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~al~yGmPP~gG~GiGiDRLvM~ltg~-sI 1081 (1094)
T PRK02983 1004 WDLVAWGV-ELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQALEYAMPPTGGLGMGVDRLVMLLTGR-SI 1081 (1094)
T ss_pred EEEEECCE-EEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHHHHHcCCCCCCeEEeeHHHHHHHHhCC-Ch
Confidence 99999997 999999999999999777754 45677766 6899999999999999999999999999996 99
Q ss_pred cccccCCCCCC
Q 012529 447 RDAIPFPRTPG 457 (461)
Q Consensus 447 rdv~~FPr~~~ 457 (461)
|||++||+.+.
T Consensus 1082 Rdvi~FP~~k~ 1092 (1094)
T PRK02983 1082 RETLPFPLVKP 1092 (1094)
T ss_pred heEecCCcCCC
Confidence 99999999764
|
|
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-83 Score=676.25 Aligned_cols=437 Identities=21% Similarity=0.326 Sum_probs=317.6
Q ss_pred cceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC--cchhhhhhcCCCCCcEE
Q 012529 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASI 86 (461)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~--~~~~~~~~~~l~~g~~V 86 (461)
.|+|+|.++... +.|++|+|+|||+++|.+|+++|++|||++|. +|||++++. ..++.++. |+.||+|
T Consensus 58 ~rt~~cg~l~~~------~~gk~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~--L~~esvV 127 (652)
T PLN02903 58 SRSHLCGALSVN------DVGSRVTLCGWVDLHRDMGGLTFLDVRDHTGI--VQVVTLPDEFPEAHRTANR--LRNEYVV 127 (652)
T ss_pred cCCCchhhcchh------hCCCEEEEEEEEEEEecCCCcEEEEEEcCCcc--EEEEEeCCccHHHHHHHhc--CCCCCEE
Confidence 478899999874 78999999999999999999999999999985 999998653 22455667 9999999
Q ss_pred EEEeeEeecC-------CCCccEEEEEeEEEEeccCCCCCCCCcc-------cCChhhhhcCccccCCCHHHHHHHHHHH
Q 012529 87 WIQGNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRN 152 (461)
Q Consensus 87 ~v~G~~~~~~-------~~~~~~el~~~~i~vl~~~~~~~Pl~~~-------~~~~~~~r~~r~l~~R~~~~~~~l~~Rs 152 (461)
.|+|+|.+++ ..++++||.+++++|||+|..++|++.. ..+.++.+++||||+|++.++++|++||
T Consensus 128 ~V~G~V~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs 207 (652)
T PLN02903 128 AVEGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRH 207 (652)
T ss_pred EEEEEEEeCCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHH
Confidence 9999998763 1236799999999999999655665432 2456667799999999999999999999
Q ss_pred HHHHHHHHHhhh-CCcEEEecceeecCCCCCCCcceeeeecCCC-cccccCCccccCCCccccCcCcceeEEEecccccC
Q 012529 153 ALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLIPS-SREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAE 230 (461)
Q Consensus 153 ~i~~~iR~ff~~-~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~-~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E 230 (461)
++++++|+||.+ +||+||+||+|+++++||+++.|...+.... .++|.+||.+.+..+ +.+|++||||||||||||
T Consensus 208 ~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGardf~v~~~~~~g~~y~L~qSPQlykQ~L--m~~G~~RvFqIa~~FR~E 285 (652)
T PLN02903 208 RVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQML--MVSGFDRYYQIARCFRDE 285 (652)
T ss_pred HHHHHHHHHHHhcCCeEEEECCeeccCCCCCCcccEEeeecCCCcccccCCCHHHHHHHH--HhccCCcEEEEehhhccC
Confidence 999999999997 9999999999999999999876654443322 234666664332212 334699999999999999
Q ss_pred CCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcC--------------------cchhcccccccc---
Q 012529 231 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC--------------------KEDMDFFNTWIE--- 287 (461)
Q Consensus 231 ~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~--------------------~~~l~~~~~~~~--- 287 (461)
++++.|| ||||||||||+|.|++|+|+++|+|++++++.+.+.. ++|+.+--...+
T Consensus 286 ~~~t~Rh-pEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~~~~~~~~PF~rity~eA~~~ygsDKPDlRf~~~l~dv~~ 364 (652)
T PLN02903 286 DLRADRQ-PEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEIKGVQLPNPFPRLTYAEAMSKYGSDKPDLRYGLELVDVSD 364 (652)
T ss_pred CCCCCcc-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHcCCCCcccCCceeeEhHH
Confidence 9998888 9999999999999999999999999999999876521 011110000000
Q ss_pred ----chh---hhhhh-----h---hhc-CCCccccHHHHHHHHHH---hc---c---ccc-c-cc---------------
Q 012529 288 ----KGI---IDRLS-----T---VAE-RDFVQLSYTDAIELLIK---AK---K---KFE-F-LV--------------- 325 (461)
Q Consensus 288 ----~~~---~~~l~-----~---~~~-~~~~~it~~ea~~~l~~---~~---~---~~~-~-~~--------------- 325 (461)
.++ ...+. + +.+ ..+.+-...+--+.+.+ .| . .+. . ..
T Consensus 365 ~~~~~~f~~f~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~k~~~~~~~ 444 (652)
T PLN02903 365 VFAESSFKVFAGALESGGVVKAICVPDGKKISNNTALKKGDIYNEAIKSGAKGLAFLKVLDDGELEGIKALVESLSPEQA 444 (652)
T ss_pred hhcCCCchhhhhhhccCCeEEEEEeCCCCccchhhhcccHHHHHHHHHcCCCceEEEEEcCCCCccCccchhhcCCHHHH
Confidence 000 00000 0 000 00100000000011111 01 0 000 0 00
Q ss_pred ---------cccccC---Ch---Hhh-------hchhhhc--c---cCCCeeeeeCCcc------------CCccccccC
Q 012529 326 ---------KWGCDL---QS---EHE-------RYLTEEA--F---GGCPVIVSDYPKE------------IKAFYMRQN 366 (461)
Q Consensus 326 ---------~~g~~l---~~---~~e-------~~l~e~~--~---~~~p~~i~~~P~~------------~~pf~~~~~ 366 (461)
+-|+.+ .. ..- ..|.+.+ . ...++||+|||.. ++||.++..
T Consensus 445 ~~l~~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~~~l~l~~~~~~~flWV~dFPlFe~~ee~~~~~a~HHPFTap~~ 524 (652)
T PLN02903 445 EQLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLIDPSRHSILWVTDFPMFEWNEDEQRLEALHHPFTAPNP 524 (652)
T ss_pred HHHHHHhCCCCCcEEEEECCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCceEecCCCCCCCCC
Confidence 001000 00 000 0011100 0 1268999999993 789998755
Q ss_pred CCc-----cceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcc----cHHHHHHHhccCCCCCccccccHHHHH
Q 012529 367 DDG-----RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLV 437 (461)
Q Consensus 367 ~~~-----~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~a~~~G~pP~gG~giGidRLv 437 (461)
+|- -.+.+|||++||+ ||+|||+|+|+++.|++.++..|++++ .++|||+|++||+|||||+|+|+|||+
T Consensus 525 ~d~~~l~~~~a~~YDLVlNG~-EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~~F~~~l~a~~yG~PphgG~alGldRlv 603 (652)
T PLN02903 525 EDMGDLSSARALAYDMVYNGV-EIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGIAYGLDRLV 603 (652)
T ss_pred cchhhhhhhhhhcceeEecce-eeccceEecCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceeecHHHHH
Confidence 442 1346899999997 999999999999999999999999876 589999999999999999999999999
Q ss_pred HHHcCCCCccccccCCCCCCCC
Q 012529 438 QFATGVENIRDAIPFPRTPGSV 459 (461)
Q Consensus 438 m~l~g~~~Irdv~~FPr~~~~~ 459 (461)
|+|+|.+||||||+||++....
T Consensus 604 mll~~~~~IrdviaFPKt~~g~ 625 (652)
T PLN02903 604 MLLAGAKSIRDVIAFPKTTTAQ 625 (652)
T ss_pred HHHcCCCchHheEecCCCCCcc
Confidence 9999999999999999988654
|
|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-82 Score=668.31 Aligned_cols=435 Identities=24% Similarity=0.358 Sum_probs=318.3
Q ss_pred cceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEE
Q 012529 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (461)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v 88 (461)
.++|++.++... +.|++|+|+|||+++|.+|+++|++|||++|. +|||++.....|+.++. |+.||+|.|
T Consensus 3 ~r~~~~~~l~~~------~~g~~V~l~GwV~~~R~~g~l~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~--l~~es~V~V 72 (588)
T PRK00476 3 MRTHYCGELRES------HVGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQV 72 (588)
T ss_pred ccceeHHHhhHH------hCCCEEEEEEEEEEEEeCCCeEEEEEEeCCce--EEEEEeCCHHHHHHHhC--CCCCCEEEE
Confidence 368899999764 68999999999999999999999999999985 99999863334666777 999999999
Q ss_pred EeeEeecCCC-------CccEEEEEeEEEEeccCCCCCCCCcc--c-CChhhhhcCccccCCCHHHHHHHHHHHHHHHHH
Q 012529 89 QGNVVPSQGS-------KQKVELKVNKIVLVGKSDPSYPIQKK--R-VSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (461)
Q Consensus 89 ~G~~~~~~~~-------~~~~el~~~~i~vl~~~~~~~Pl~~~--~-~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~i 158 (461)
+|+|.+++.+ ++++||.+++++|||+|. ++|++.. . .+.+...++||||+|++.++++|++||++++++
T Consensus 73 ~G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~-~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~i 151 (588)
T PRK00476 73 TGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSK-TLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAI 151 (588)
T ss_pred EEEEEecCCcccCccCCCCcEEEEEeEEEEEecCC-CCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHH
Confidence 9999987632 467999999999999998 6777542 2 234444499999999999999999999999999
Q ss_pred HHHhhhCCcEEEecceeecCCCCCCCcceeeeec--CCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCC
Q 012529 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTL--IPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSR 236 (461)
Q Consensus 159 R~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~--~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~r 236 (461)
|+||.++||+||+||+|+++++||+++ |.|... ....++|.+||.+.+..+ +.+|++||||||||||||+++++|
T Consensus 152 R~ff~~~gFiEV~TP~L~~s~~ega~~-f~v~~~~~~~~~~~L~qSpql~kq~l--~~~g~~rvfqi~~~FR~E~~~~~r 228 (588)
T PRK00476 152 RNFLDDNGFLEIETPILTKSTPEGARD-YLVPSRVHPGKFYALPQSPQLFKQLL--MVAGFDRYYQIARCFRDEDLRADR 228 (588)
T ss_pred HHHHHHCCCEEEECCeeecCCCCCCcc-ceecccccCCceeecCCCHHHHHHHH--HhcccCceEEEeceeecCCCCCCc
Confidence 999999999999999999999998876 776532 111233566654332212 334699999999999999999998
Q ss_pred CccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcC-c---------chhcccccccc--------chhhh------
Q 012529 237 HLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC-K---------EDMDFFNTWIE--------KGIID------ 292 (461)
Q Consensus 237 Hl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~-~---------~~l~~~~~~~~--------~~~~~------ 292 (461)
|+ |||||||||+|.|++|+|+++|++|+++++.+.+.. . +.++.++...+ .++.+
T Consensus 229 ~~-EFt~le~e~af~~~~dvm~~~E~li~~i~~~~~~~~~~~pf~r~ty~ea~~~yg~dkPDlR~~~eI~DVT~if~~s~ 307 (588)
T PRK00476 229 QP-EFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVLGVDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVDVTDLFKDSG 307 (588)
T ss_pred Cc-ccccceeeecCCCHHHHHHHHHHHHHHHHHHHhCccCCCCceEEEHHHHHHHHCCCCCcccCCceehhHHHHhccCC
Confidence 86 999999999999999999999999999999886521 0 00111110000 00000
Q ss_pred ------hhhh---hhcCCCc-------cccHHHHHHHHHHhcc------cccc-c----------------------ccc
Q 012529 293 ------RLST---VAERDFV-------QLSYTDAIELLIKAKK------KFEF-L----------------------VKW 327 (461)
Q Consensus 293 ------~l~~---~~~~~~~-------~it~~ea~~~l~~~~~------~~~~-~----------------------~~~ 327 (461)
.+++ +.+..++ +-..++..+..+..|. .... . .+-
T Consensus 308 f~vf~~~l~~gg~VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL~~i~~~~~~l~~~~akflsee~~~~L~e~l~~k~ 387 (588)
T PRK00476 308 FKVFAGAANDGGRVKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGLAYIKVNEDGLKGPIAKFLSEEELAALLERTGAKD 387 (588)
T ss_pred chhhhhhhccCCeEEEEEecCCCCccchhHHHHHHHHHHHcCCCceEEEEEcCCCCcCchhhcCCHHHHHHHHHHhCCCC
Confidence 0000 0000000 1111222222221110 0000 0 001
Q ss_pred cccC---ChHhh---h-------chhhhc-----ccCCCeeeeeCCcc------------CCccccccCCC--------c
Q 012529 328 GCDL---QSEHE---R-------YLTEEA-----FGGCPVIVSDYPKE------------IKAFYMRQNDD--------G 369 (461)
Q Consensus 328 g~~l---~~~~e---~-------~l~e~~-----~~~~p~~i~~~P~~------------~~pf~~~~~~~--------~ 369 (461)
|+.+ +...+ . .+.+.+ ....++||+|||.. ++||+++..+| +
T Consensus 388 GDll~~~A~~~~~v~~aLG~LR~~L~~~~~~~~~~~~~f~Wv~dfPlf~~~~~~~~~~~~HhpFT~p~~~d~~~l~~~~p 467 (588)
T PRK00476 388 GDLIFFGADKAKVVNDALGALRLKLGKELGLIDEDKFAFLWVVDFPMFEYDEEEGRWVAAHHPFTMPKDEDLDELETTDP 467 (588)
T ss_pred CCEEEEECCchHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCeeeeecCCCCCcCccChhHhhcCCH
Confidence 1100 00000 0 011100 11368999999993 78999875543 2
Q ss_pred --cceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcc----cHHHHHHHhccCCCCCccccccHHHHHHHHcCC
Q 012529 370 --RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 443 (461)
Q Consensus 370 --~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~ 443 (461)
-.+.+|||++||+ ||+|||+|+|+++.|++.++..|++++ .++|||+|++||+|||||+|+|+|||+|+|+|.
T Consensus 468 ~~~~a~~~dlv~ng~-E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~~~a~~~g~pph~g~~~G~dr~~~~~~~~ 546 (588)
T PRK00476 468 GKARAYAYDLVLNGY-ELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLDRLVMLLAGA 546 (588)
T ss_pred HHhhhheeeeEEeee-eeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCC
Confidence 1357899999997 999999999999999999999999886 589999999999999999999999999999999
Q ss_pred CCccccccCCCCCCCC
Q 012529 444 ENIRDAIPFPRTPGSV 459 (461)
Q Consensus 444 ~~Irdv~~FPr~~~~~ 459 (461)
+||||||+||++....
T Consensus 547 ~~irdvi~fp~~~~g~ 562 (588)
T PRK00476 547 DSIRDVIAFPKTQSAQ 562 (588)
T ss_pred ccHHheeeccCCCCcc
Confidence 9999999999988654
|
|
| >KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-83 Score=628.46 Aligned_cols=440 Identities=19% Similarity=0.254 Sum_probs=362.6
Q ss_pred CCCccccceeeeccccCCCcC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCccCccEEEEEeCCC----cchhh
Q 012529 3 SKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA----EGYDQ 74 (461)
Q Consensus 3 ~~~~~~~~~~~i~~i~~~~~~---~~~~~~~~v~v~G~v~~~R~~~-~~~Fi~l~D~s~~~~iQvv~~~~~----~~~~~ 74 (461)
+-+|+|..++++.++.+.+.+ +....+..|+|+|||+++|.+| |++|++|++++. +||||++.+. ..|.+
T Consensus 75 Pyphkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g~--klQvm~~~~~~~~~~~F~~ 152 (560)
T KOG1885|consen 75 PYPHKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDGV--KLQVMANAKKITSEEDFEQ 152 (560)
T ss_pred CCcchhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCCe--EEEEEEehhhcCCHHHHHH
Confidence 457899999999998876532 4445677899999999999995 999999998863 6999999875 25665
Q ss_pred hhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCCh---hhhhcCccccCCCH-HHHHHHHH
Q 012529 75 VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPRTN-TFGAVARV 150 (461)
Q Consensus 75 ~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~---~~~r~~r~l~~R~~-~~~~~l~~ 150 (461)
.. .+|+.||+|.|.|.+.+|+++ +++|.+.++.+|++|+. |+|.+..++ +..-+.||+|+-.| .++..|++
T Consensus 153 ~~-~~lkrGDiig~~G~pgrt~~g--ELSi~~~~~~lLspcLh--~lP~~~~gLkD~EtRyrqRylDlilN~~~r~~f~~ 227 (560)
T KOG1885|consen 153 LH-KFLKRGDIIGVSGYPGRTKSG--ELSIIPNEIILLSPCLH--MLPHEHFGLKDKETRYRKRYLDLILNPEVRDRFRI 227 (560)
T ss_pred HH-hhhhccCEEeeecCCCcCCCc--eEEEeecchheecchhc--cCChhhcCCCcHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 42 239999999999999998877 89999999999999984 555544444 32336899998754 68999999
Q ss_pred HHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCc--ccccCCccccCCCccccCcCcceeEEEecccc
Q 012529 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS--REAAESPVDAIPKTKDGLIDWSQVYTFGPTFR 228 (461)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~--~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR 228 (461)
|++||+.||.||+++||+||+||+|...++++.|.|| ||+++..+ -++..+|++++++++.| |++||||||+.||
T Consensus 228 RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPF-IT~hndldm~LylRiAPEL~lK~LvVG--GldrVYEIGr~FR 304 (560)
T KOG1885|consen 228 RAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPF-ITHHNDLDMDLYLRIAPELYLKMLVVG--GLDRVYEIGRQFR 304 (560)
T ss_pred HHHHHHHHHHHhhhcCceEecchhhccccCccccCce-eecccccCcceeeeechHHHHHHHHhc--cHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999 57776533 34556688888888877 4999999999999
Q ss_pred cCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCc------------chhccccccccchhhhhhhh
Q 012529 229 AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK------------EDMDFFNTWIEKGIIDRLST 296 (461)
Q Consensus 229 ~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~------------~~l~~~~~~~~~~~~~~l~~ 296 (461)
||+. +.+||||||.||+||||+||+|+|+++|+|+..+++.+.+..+ -++++-.+|.+..+++.|++
T Consensus 305 NEGI-DlTHNPEFTTcEfY~AYady~dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~~~~~~eldf~~pfrri~mi~~L~k 383 (560)
T KOG1885|consen 305 NEGI-DLTHNPEFTTCEFYMAYADYEDLMDMTEELLSGMVKNITGSYKITYHPNGPEEPELELDFTRPFRRIEMIEELEK 383 (560)
T ss_pred hcCc-ccccCCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCceeEeecCCCCCCCceeeeccCCeeeeeHHHHHHH
Confidence 9999 5899999999999999999999999999999999999987542 24667778888999999999
Q ss_pred hhcCCCcc---ccHHHHHHHHHHh----cccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCc
Q 012529 297 VAERDFVQ---LSYTDAIELLIKA----KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG 369 (461)
Q Consensus 297 ~~~~~~~~---it~~ea~~~l~~~----~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~ 369 (461)
.++.+|+. +.-.|+-++|... +++.+.+-.-+..|+...+.+|...+ . .|+||.|+|..+||+++.+....
T Consensus 384 ~lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE~~c-v-nPTFi~~hP~imSPLAK~hrs~~ 461 (560)
T KOG1885|consen 384 ELGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLEPTC-V-NPTFIIDHPQIMSPLAKYHRSKA 461 (560)
T ss_pred HhCCCCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhcccc-C-CCeeEcCCchhcCcccccccccc
Confidence 99988864 5566777766654 33332222223345555666565543 3 69999999999999999888778
Q ss_pred cceeccccccCCceeeechhhhcccHHHHHHHHHHc------CCCcccH--HHHHHHhccCCCCCccccccHHHHHHHHc
Q 012529 370 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFAT 441 (461)
Q Consensus 370 ~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~------~~~~~~~--~~yl~a~~~G~pP~gG~giGidRLvm~l~ 441 (461)
+.++|||||++| .||||++.++||+-.|+++++++ |-|.... +.|+.|++||+||+||||+|||||+|+||
T Consensus 462 glteRFElFi~~-kEicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~Fc~ALEYGlPPtgGwGmGIDRL~MllT 540 (560)
T KOG1885|consen 462 GLTERFELFIAG-KEICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDFCTALEYGLPPTGGWGMGIDRLVMLLT 540 (560)
T ss_pred chhhHHHHhhhh-HHHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHHHHHHHcCCCCCCccccchhhhhhhhc
Confidence 899999999999 59999999999999999998654 3332222 77999999999999999999999999999
Q ss_pred CCCCccccccCCCCC
Q 012529 442 GVENIRDAIPFPRTP 456 (461)
Q Consensus 442 g~~~Irdv~~FPr~~ 456 (461)
+..|||||++||-..
T Consensus 541 ds~~I~EVL~Fp~mk 555 (560)
T KOG1885|consen 541 DSNNIREVLLFPAMK 555 (560)
T ss_pred CCcchhheeeccccC
Confidence 999999999999643
|
|
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-80 Score=661.91 Aligned_cols=434 Identities=21% Similarity=0.297 Sum_probs=309.7
Q ss_pred cceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhhhhhcCCCCCcE
Q 012529 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGAS 85 (461)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~ 85 (461)
.|+|+|.+|... +.|++|+|+|||+++|.+|+++|++|||++|. ||||++++. ..|+.++. |+.||+
T Consensus 4 ~r~~~cg~l~~~------~~g~~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~~--L~~Esv 73 (706)
T PRK12820 4 NDRSFCGHLSLD------DTGREVCLAGWVDAFRDHGELLFIHLRDRNGF--IQAVFSPEAAPADVYELAAS--LRAEFC 73 (706)
T ss_pred ccccccccCChh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCcc--EEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 478999999875 78999999999999999999999999999985 999998653 23555667 999999
Q ss_pred EEEEeeEeecCC-------CCccEEEEEeEEEEeccCCCCCCCC--ccc-----------CChhhhh-cCccccCCCHHH
Q 012529 86 IWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQ--KKR-----------VSREFLR-TKAHLRPRTNTF 144 (461)
Q Consensus 86 V~v~G~~~~~~~-------~~~~~el~~~~i~vl~~~~~~~Pl~--~~~-----------~~~~~~r-~~r~l~~R~~~~ 144 (461)
|.|+|+|.+++. .++++||.+++++||++|.+ +|++ .+. ...+.+| ++||||+|++.+
T Consensus 74 V~V~G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~~-lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~ 152 (706)
T PRK12820 74 VALQGEVQKRLEETENPHIETGDIEVFVRELSILAASEA-LPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAM 152 (706)
T ss_pred EEEEeEEeccCccccCCCCCCCcEEEEeeEEEEEecCCC-CCCCCcccccccccccccccccCHhhhhhCceeecCCHHH
Confidence 999999988531 23679999999999999963 4544 331 1234455 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCc-ccccCCccccCCCccccCcCcceeEEE
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS-REAAESPVDAIPKTKDGLIDWSQVYTF 223 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~-~~~~~s~~~~l~~~~~~~~~~~rVfeI 223 (461)
+++|++||++++++|+||.++||+||+||+|+++++|||++.+...+..... +.|.+||.+.+..+ +.+|++|||||
T Consensus 153 ~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~~~~p~~~~~~~~y~L~qSPQlykq~l--m~~G~~rvfqI 230 (706)
T PRK12820 153 QDHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTPEGARDYLVPSRIHPKEFYALPQSPQLFKQLL--MIAGFERYFQL 230 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcceEEeeecCCCcceecCCCHHHHHHHH--HhccCCcEEEE
Confidence 9999999999999999999999999999999999999988743322222222 23566654332211 33479999999
Q ss_pred ecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcC----------cchhccccccccchh---
Q 012529 224 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC----------KEDMDFFNTWIEKGI--- 290 (461)
Q Consensus 224 ~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~----------~~~l~~~~~~~~~~~--- 290 (461)
|||||||++++.|| ||||||||||+|.|++|+|+++|+|++++++ +.+.. .+.++.++... +++
T Consensus 231 ~~~FR~E~~~t~r~-pEFT~LE~E~af~d~~dvm~l~E~li~~v~~-~~~~~~~~pf~r~ty~eA~~~yG~DK-PDlR~~ 307 (706)
T PRK12820 231 ARCFRDEDLRPNRQ-PEFTQLDIEASFIDEEFIFELIEELTARMFA-IGGIALPRPFPRMPYAEAMDTTGSDR-PDLRFD 307 (706)
T ss_pred echhcCCCCCCCcC-ccccccceeeccCCHHHHHHHHHHHHHHHHH-hcCcCCCCCceEEEHHHHHHHhCCCC-CccccC
Confidence 99999999998777 9999999999999999999999999999986 22110 01111111000 000
Q ss_pred ------hh--------hhhh------------hhcC--CCccccHHHHH--HHHHHhcc------cccc-c---------
Q 012529 291 ------ID--------RLST------------VAER--DFVQLSYTDAI--ELLIKAKK------KFEF-L--------- 324 (461)
Q Consensus 291 ------~~--------~l~~------------~~~~--~~~~it~~ea~--~~l~~~~~------~~~~-~--------- 324 (461)
.+ .++. +.+. .+.+-..++++ +..+..|. .... .
T Consensus 308 ~~l~d~~~~~~~~~f~~f~~~~~~~g~v~~i~~~~~~~~~s~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~ 387 (706)
T PRK12820 308 LKFADATDIFENTRYGIFKQILQRGGRIKGINIKGQSEKLSKNVLQNEYAKEIAPSFGAKGMTWMRAEAGGLDSNIVQFF 387 (706)
T ss_pred cEEEEHHHHhccCCchhhhhhhccCCeEEEEEeCCCccccCHHHHHHHHHHHHHHHcCCCceEEEEECCCCcCCchhccC
Confidence 00 0000 0000 01110011101 11111110 0000 0
Q ss_pred -------------ccccccC---C----hHhhhch-------hhhc-----ccCCCeeeeeCCc-----------cCCcc
Q 012529 325 -------------VKWGCDL---Q----SEHERYL-------TEEA-----FGGCPVIVSDYPK-----------EIKAF 361 (461)
Q Consensus 325 -------------~~~g~~l---~----~~~e~~l-------~e~~-----~~~~p~~i~~~P~-----------~~~pf 361 (461)
.+-|+.+ . ...-..| .+.+ ....++||+|||. .++||
T Consensus 388 ~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~~~~~flWV~dFPlfe~~~e~~~~a~HHPF 467 (706)
T PRK12820 388 SADEKEALKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGLIPEGVFHPLWITDFPLFEATDDGGVTSSHHPF 467 (706)
T ss_pred CHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCcccCCCCCCeeeeeCCC
Confidence 0011100 0 0000001 0000 0136899999999 47999
Q ss_pred ccccCCC--------cc--ceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcc----cHHHHHHHhccCCCCCc
Q 012529 362 YMRQNDD--------GR--TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHA 427 (461)
Q Consensus 362 ~~~~~~~--------~~--~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~a~~~G~pP~g 427 (461)
+++..+| +. .+.+|||++||+ ||+|||+|+|+++.|++.|+..|++++ .+++||+|++||+||||
T Consensus 468 T~p~~~d~~~l~~~~p~~~~~~~YDLV~nG~-E~ggGs~Rih~~~~q~~~f~~lg~~~~~~~~~Fgf~l~a~~~G~pphg 546 (706)
T PRK12820 468 TAPDREDFDPGDIEELLDLRSRAYDLVVNGE-ELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPPHG 546 (706)
T ss_pred CCcCccChhhhccCChHHhhhheeeEEecce-eeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9875432 11 346899999997 999999999999999999999999875 47899999999999999
Q ss_pred cccccHHHHHHHHcCCCCccccccCCCCCCCC
Q 012529 428 GFGLGFERLVQFATGVENIRDAIPFPRTPGSV 459 (461)
Q Consensus 428 G~giGidRLvm~l~g~~~Irdv~~FPr~~~~~ 459 (461)
|+|+|+|||+|+|+|.+||||||+||++....
T Consensus 547 G~a~G~dRlvm~l~~~~sirdviaFPK~~~g~ 578 (706)
T PRK12820 547 GIALGLDRVVSMILQTPSIREVIAFPKNRSAA 578 (706)
T ss_pred ceeccHHHHHHHHcCCccHHHhcccCCCCCCC
Confidence 99999999999999999999999999987653
|
|
| >KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-81 Score=604.13 Aligned_cols=415 Identities=29% Similarity=0.500 Sum_probs=365.0
Q ss_pred CCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCCCCcEEEEEeeEeecCCC---Cc
Q 012529 25 LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQGNVVPSQGS---KQ 100 (461)
Q Consensus 25 ~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~~g~~V~v~G~~~~~~~~---~~ 100 (461)
.++.|++|+|.||||++|++++++||+||||+|. ||||++.+.. .|+.+ . |..++.|.|.|++.+.|.+ .+
T Consensus 119 ~~~r~qrVkv~gWVhrlR~qk~l~FivLrdg~gf--lqCVl~~kl~~~yd~~-~--Ls~essv~vYG~i~~~p~GK~apg 193 (545)
T KOG0555|consen 119 TENRGQRVKVFGWVHRLRRQKSLIFIVLRDGTGF--LQCVLSDKLCQSYDAL-T--LSTESSVTVYGTIKKLPEGKSAPG 193 (545)
T ss_pred ccccCceEEeehhhHhhhhcCceEEEEEecCCce--EEEEEcchhhhhhccc-c--ccccceEEEEEEEecCcCCCCCCC
Confidence 3578999999999999999999999999999987 9999998764 34444 4 9999999999999998755 35
Q ss_pred cEEEEEeEEEEeccCCCC---CCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeec
Q 012529 101 KVELKVNKIVLVGKSDPS---YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITA 177 (461)
Q Consensus 101 ~~el~~~~i~vl~~~~~~---~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~ 177 (461)
+.||.|+-++|++.|... .|+. +..+.+.+.+||||-+|....+.+++.|+.+++++|++|.+.||.||.+|.|+.
T Consensus 194 ghEl~vdy~Eiig~Apag~~~n~ln-e~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQ 272 (545)
T KOG0555|consen 194 GHELNVDYWEIIGLAPAGGFDNPLN-EESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQ 272 (545)
T ss_pred CceEEeeeeeeecccCCCccccccc-ccCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEE
Confidence 799999999999998764 4554 346778888999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHH
Q 012529 178 SDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDM 257 (461)
Q Consensus 178 ~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm 257 (461)
...||++.+|.++|++. .+++.+|. +|++ ......+++||+|.++||||.|+|+|||+|||++|+|++|.+++++|
T Consensus 273 TQVEGGsTLFkldYyGE-eAyLTQSS--QLYL-EtclpAlgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afltfd~ll 348 (545)
T KOG0555|consen 273 TQVEGGSTLFKLDYYGE-EAYLTQSS--QLYL-ETCLPALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLTFDDLL 348 (545)
T ss_pred EEecCcceEEeecccCc-hhhccchh--HHHH-HHhhhhcCceeEecHhhhhhhhhhhhhhhhheeeeeecccccHHHHH
Confidence 99999999999999998 45666652 2221 12222378999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcc-hhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccc--ccccccCChH
Q 012529 258 ACATAYLQYVVRYILDNCKE-DMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL--VKWGCDLQSE 334 (461)
Q Consensus 258 ~~~e~li~~i~~~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~--~~~g~~l~~~ 334 (461)
+.+|+|+...+..+++.... .|..+++.+ +.+..||.|+.|+|||+.|++++++.+.. .++|+|+...
T Consensus 349 ~~iE~lvc~~vdr~l~dp~~~li~~lnP~f---------~~P~~PFkRm~Y~dAI~wLke~~vk~edg~~fefGdDI~eA 419 (545)
T KOG0555|consen 349 DRIEALVCDSVDRLLEDPIAPLIKQLNPDF---------KAPKRPFKRMNYSDAIEWLKEHDVKKEDGTDFEFGDDIPEA 419 (545)
T ss_pred HHHHHHHHHHHHHHHhChhhhhHHHhCCCC---------CCCCCchhcCCHHHHHHHHHhcCCcCccCcccccccchhhH
Confidence 99999999999999876432 333333211 23568999999999999999998765443 5789999999
Q ss_pred hhhchhhhcccCCCeeeeeCCccCCccccccCC-CccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHH
Q 012529 335 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW 413 (461)
Q Consensus 335 ~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~ 413 (461)
.|+++.+..+ .|+|++.||.++++|||+... |+..+++.|+++||+|||+|||+|+.+.+++.+.++..|+|+.+|.
T Consensus 420 aER~mtdtIg--~PIfLtrFpveiKsFYM~rc~dd~~lTESvD~LmPnVGEIvGGSMRi~d~eeLlagfkRegId~~pYY 497 (545)
T KOG0555|consen 420 AERKMTDTIG--VPIFLTRFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGEIVGGSMRIDDSEELLAGFKREGIDPDPYY 497 (545)
T ss_pred HHHhhhhhcC--CceEEeeccccccceeeecccCccccceeeeeecCCccccccceeeeccHHHHHHHHhhcCCCCCCce
Confidence 9999998764 799999999999999998765 5578999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 414 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 414 ~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
||+|.++||..||||+|||+||++|||++..+||||.+|||-.+||.
T Consensus 498 Wy~DqrkyGt~pHGGyGLGlERfL~wL~~r~~vre~cLyPRfv~RC~ 544 (545)
T KOG0555|consen 498 WYTDQRKYGTCPHGGYGLGLERFLAWLCDRYHVREVCLYPRFVGRCT 544 (545)
T ss_pred EEeeccccccCCCCcccccHHHHHHHHhcccchhheeecchhhccCC
Confidence 99999999999999999999999999999999999999999999995
|
|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-78 Score=603.20 Aligned_cols=319 Identities=43% Similarity=0.739 Sum_probs=283.0
Q ss_pred CChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccc
Q 012529 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205 (461)
Q Consensus 126 ~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~ 205 (461)
+++++++++||||+|++..++++++||.|++++|+||.++||+||+||+|+.+++|+++++|.++|++. ..+|++||++
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~~~~~~-~~yL~~Spql 80 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKVSYFGK-PAYLAQSPQL 80 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCccccccCCC-cceecCCHHH
Confidence 467888999999999999999999999999999999999999999999999999999999999988876 5778889876
Q ss_pred cCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHHHhcCcchhccccc
Q 012529 206 AIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNT 284 (461)
Q Consensus 206 ~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~ 284 (461)
.++.+.. +++|||+||||||||++++.||||||||||||++|. |++|+|+++|++|+++++.+.+.++.++.++..
T Consensus 81 ~lk~l~~---~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~~ 157 (322)
T cd00776 81 YKEMLIA---ALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQ 157 (322)
T ss_pred HHHHHHH---hhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhc
Confidence 6544333 389999999999999999999999999999999999 999999999999999999999888776654310
Q ss_pred cccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccc
Q 012529 285 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMR 364 (461)
Q Consensus 285 ~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~ 364 (461)
...+...+..||+++||.||++++++.+.. ....||.+++..+|++|++.+.+ +|+||+|||.+++|||++
T Consensus 158 ------~~~~~~~~~~~~~rit~~eA~~~l~~~~~~--~~~~~~~~l~~~~e~~l~~~~~~-~p~fi~~~P~~~~pfy~~ 228 (322)
T cd00776 158 ------LNRELLKPLEPFPRITYDEAIELLREKGVE--EEVKWGEDLSTEHERLLGEIVKG-DPVFVTDYPKEIKPFYMK 228 (322)
T ss_pred ------cCcccccCCCCceEEEHHHHHHHHHHcCCC--CCCCccchhcHHHHHHHHHHhCC-CcEEEECCccccCCceee
Confidence 011111235689999999999999987753 22579999999999999886534 799999999999999987
Q ss_pred cCCC-ccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCC
Q 012529 365 QNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 443 (461)
Q Consensus 365 ~~~~-~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~ 443 (461)
.+++ +++++|||||++|++||+||++|++|+++|.++++++|++++.++|||+|+++|+|||||||||||||+|++||.
T Consensus 229 ~~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRL~m~~~g~ 308 (322)
T cd00776 229 PDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGL 308 (322)
T ss_pred ecCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCceeeEhHHHHHHHHcCC
Confidence 7654 478999999999966999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCC
Q 012529 444 ENIRDAIPFPRTPG 457 (461)
Q Consensus 444 ~~Irdv~~FPr~~~ 457 (461)
+|||||++|||+++
T Consensus 309 ~~Irdv~~FPr~~~ 322 (322)
T cd00776 309 DNIREAILFPRDPK 322 (322)
T ss_pred CchheEeecCCCCC
Confidence 99999999999985
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-75 Score=584.04 Aligned_cols=316 Identities=27% Similarity=0.462 Sum_probs=273.0
Q ss_pred CChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCC-------CcceeeeecCCCccc
Q 012529 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA-------GEQFCVTTLIPSSRE 198 (461)
Q Consensus 126 ~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~-------~~~F~v~~~~~~~~~ 198 (461)
.+.++..++|++++|++.++++|++||+|++++|+||.++||+||+||+|++++++|. ...|.++|++. ..+
T Consensus 8 ~~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~-~~y 86 (335)
T PRK06462 8 KEYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGV-EYY 86 (335)
T ss_pred cchhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCC-cee
Confidence 3566677899999999999999999999999999999999999999999999877633 22455566655 567
Q ss_pred ccCCccccCCCccccCcCcceeEEEecccccCCCCC--CCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCc
Q 012529 199 AAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 276 (461)
Q Consensus 199 ~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~ 276 (461)
+++||.+. +++..+ +++||||||||||||++++ .||||||||||||++|.|++|+|+++|++|+++++.+.+.++
T Consensus 87 L~~Spql~-k~ll~~--g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~ 163 (335)
T PRK06462 87 LADSMILH-KQLALR--MLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHE 163 (335)
T ss_pred eccCHHHH-HHHHHh--hcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 88887654 343332 4899999999999999977 699999999999999999999999999999999999998887
Q ss_pred chhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCc
Q 012529 277 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 356 (461)
Q Consensus 277 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~ 356 (461)
+++..++... ..++.||++|||.||+++|++.+.. ..++.+++..+|++|.+.+ + .||||+|||.
T Consensus 164 ~~i~~~~~~~---------~~~~~p~~rit~~eA~~~l~~~~~~----~~~~~~l~~~~E~~l~~~~-~-~p~fi~~yP~ 228 (335)
T PRK06462 164 DELEFFGRDL---------PHLKRPFKRITHKEAVEILNEEGCR----GIDLEELGSEGEKSLSEHF-E-EPFWIIDIPK 228 (335)
T ss_pred HHHHhcCCcc---------ccCCCCCeEEEHHHHHHHHHhcCCC----cchHHHHhHHHHHHHHHHh-C-CCEEEECCCh
Confidence 7776554311 0124689999999999999887654 2346788889999998754 4 7999999999
Q ss_pred cCCccccccCC-CccceeccccccC-CceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHH
Q 012529 357 EIKAFYMRQND-DGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFE 434 (461)
Q Consensus 357 ~~~pf~~~~~~-~~~~~~~fdl~~~-G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGid 434 (461)
+++|||++.++ ++.+++|||||++ |+|||++|++|+|+++++.++++++|++++.++|||+|++||+|||||||||||
T Consensus 229 ~~~pfy~~~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~glGid 308 (335)
T PRK06462 229 GSREFYDREDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVE 308 (335)
T ss_pred hhCCcccccCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCCeEEEcHH
Confidence 99999987654 4467889999997 779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCccccccCCCCCCCCC
Q 012529 435 RLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 435 RLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
||+|++||.+|||||++|||++++..
T Consensus 309 RLvm~~~g~~~Irdv~~FPr~~g~~~ 334 (335)
T PRK06462 309 RLTRYICGLRHIREVQPFPRVPGIVA 334 (335)
T ss_pred HHHHHHcCCCchheeeeccCCCCCCC
Confidence 99999999999999999999999863
|
|
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-75 Score=588.91 Aligned_cols=311 Identities=38% Similarity=0.645 Sum_probs=256.1
Q ss_pred hhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeee-----ecCCCcccccCC
Q 012529 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVT-----TLIPSSREAAES 202 (461)
Q Consensus 128 ~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~-----~~~~~~~~~~~s 202 (461)
.++++++||+|+|++.++++|++||.+++++|+||.++||+||+||+|++++++|++++|.|+ +++ ...+|++|
T Consensus 2 ~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~-~~~~L~~S 80 (335)
T PF00152_consen 2 EETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFG-EPAYLTQS 80 (335)
T ss_dssp HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETT-EEEEE-SS
T ss_pred hhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcc-cceecCcC
Confidence 467889999999999999999999999999999999999999999999999999999999998 776 35788899
Q ss_pred ccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccc
Q 012529 203 PVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFF 282 (461)
Q Consensus 203 ~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~ 282 (461)
|.+.++.+.. +|++||||||||||||+++|.||||||||||||++|.|++++|+++|+||+++++.+.+..+. ...
T Consensus 81 pql~~k~ll~--~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~-~~~- 156 (335)
T PF00152_consen 81 PQLYLKRLLA--AGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKE-LSL- 156 (335)
T ss_dssp SHHHHHHHHH--TTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHH-HHT-
T ss_pred hHHHHhhhcc--ccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCcc-ccc-
Confidence 8765543333 359999999999999999999999999999999999999999999999999999998754211 110
Q ss_pred cccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccc-------------cccccccCChHhhhchhhhcccCCCe
Q 012529 283 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF-------------LVKWGCDLQSEHERYLTEEAFGGCPV 349 (461)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~-------------~~~~g~~l~~~~e~~l~e~~~~~~p~ 349 (461)
...+..+|++++|.||++++...+.+... ...+|.++...+|+.|++.... .|+
T Consensus 157 ------------~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~e~~L~~~~~~-~p~ 223 (335)
T PF00152_consen 157 ------------NIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEVGRLLSEEVEPYLVEKYFT-DPV 223 (335)
T ss_dssp ------------CEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHCHHHHHHHHHHHHHHHHSS-SEE
T ss_pred ------------cccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchHHHHHHHHHHHHhhhcccC-CcE
Confidence 11233569999999999998876432211 0123566778888888765554 899
Q ss_pred eeeeCCccCCccccccCCCc-cceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCccc----HHHHHHHhccCCC
Q 012529 350 IVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSV 424 (461)
Q Consensus 350 ~i~~~P~~~~pf~~~~~~~~-~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~----~~~yl~a~~~G~p 424 (461)
||+|||..++|||++.++++ .++++||||++| +||+|||+|+||+++|++++++.+++++. ++|||+|+++|+|
T Consensus 224 fI~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~g-~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~~~~~G~p 302 (335)
T PF00152_consen 224 FITDYPAEQSPFYKPPNDDDPGVAERFDLYIPG-GEIANGSQREHDPEELRERFEEQGIDPEEEMPIDEWYLEALKYGMP 302 (335)
T ss_dssp EEEEEBGGGSTTTBBBSSSTTTBBSEEEEEETT-EEEEEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHHHHHHHTT--
T ss_pred EEEecccccCcccccccccccccccceeEEEeC-EEEehHHhhhhHHHHHHHHhhhcccccccccchhHhHHHhhhccCc
Confidence 99999999999999888776 789999999999 59999999999999999999999988777 8999999999999
Q ss_pred CCccccccHHHHHHHHcCCCCccccccCCCCCC
Q 012529 425 PHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 457 (461)
Q Consensus 425 P~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~ 457 (461)
||||||||+|||+|++||.+|||||++|||+++
T Consensus 303 p~~G~glG~eRLvm~l~g~~~Irdv~~FPr~~~ 335 (335)
T PF00152_consen 303 PHGGFGLGLERLVMLLLGLKNIRDVIPFPRDRQ 335 (335)
T ss_dssp SEEEEEEEHHHHHHHHHT-SSGGGGSSS-CBT-
T ss_pred ccCcceehHHHHHHHHcCCCcHHheecCCCCCC
Confidence 999999999999999999999999999999863
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B .... |
| >KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-71 Score=544.84 Aligned_cols=409 Identities=23% Similarity=0.349 Sum_probs=312.9
Q ss_pred cceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhh--hhhcCCCCCcEE
Q 012529 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ--VKSGLITTGASI 86 (461)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~--~~~~~l~~g~~V 86 (461)
++++.|.++... .+|++|.+|||+...|.+|.+.|..|||..|. +|+.++.+.....+ .+. ++.+|+|
T Consensus 33 ~~t~~~~el~~~------~vg~kv~l~GWl~~~~~~k~~~F~~LRD~~G~--vq~lls~~s~~l~~~~~~~--v~~e~vv 102 (628)
T KOG2411|consen 33 SRTSLCGELSVN------DVGKKVVLCGWLELHRVHKMLTFFNLRDAYGI--VQQLLSPDSFPLAQKLEND--VPLEDVV 102 (628)
T ss_pred hhhccchhhccC------ccCCEEEEeeeeeeeeccccceEEEeeccCcc--eEEEecchhhhHHhcccCC--CChhheE
Confidence 456778888764 78999999999999999999999999999975 88888776532222 234 8999999
Q ss_pred EEEeeEeecCC-------CCccEEEEEeEEEEeccCCCCCCCCccc-------CChhhhhcCccccCCCHHHHHHHHHHH
Q 012529 87 WIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR-------VSREFLRTKAHLRPRTNTFGAVARVRN 152 (461)
Q Consensus 87 ~v~G~~~~~~~-------~~~~~el~~~~i~vl~~~~~~~Pl~~~~-------~~~~~~r~~r~l~~R~~~~~~~l~~Rs 152 (461)
.|+|++...+. .++.+|+.++++++++++...+|+...+ .+..+...+|||++|.+.++..+|+||
T Consensus 103 ~v~gtvv~Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS 182 (628)
T KOG2411|consen 103 QVEGTVVSRPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRS 182 (628)
T ss_pred eeeeeEecccccccCccccccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHH
Confidence 99999987632 3568999999999999998878875432 233344489999999999999999999
Q ss_pred HHHHHHHHHhhh-CCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccc------cCcCcceeEEEec
Q 012529 153 ALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKD------GLIDWSQVYTFGP 225 (461)
Q Consensus 153 ~i~~~iR~ff~~-~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~------~~~~~~rVfeI~~ 225 (461)
+++..+|+||.+ +||+||+||+|-..++|||.+ |.|..... ...+|+|+|++| |..|++|+|||++
T Consensus 183 ~~v~~iR~yl~n~~GFvevETPtLFkrTPgGA~E-FvVPtr~~------~g~FYaLpQSPQQfKQlLMvsGidrYyQiAR 255 (628)
T KOG2411|consen 183 NVVKKIRRYLNNRHGFVEVETPTLFKRTPGGARE-FVVPTRTP------RGKFYALPQSPQQFKQLLMVSGIDRYYQIAR 255 (628)
T ss_pred HHHHHHHHHHhhhcCeeeccCcchhccCCCccce-eecccCCC------CCceeecCCCHHHHHHHHHHhchhhHHhHHh
Confidence 999999999976 579999999999999999988 87765433 134677887764 4568999999999
Q ss_pred ccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccc
Q 012529 226 TFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQL 305 (461)
Q Consensus 226 ~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~i 305 (461)
|||+|+++.+|+ |||||+|+||+|.+.+|+|+++|+++.+++....+.. +..||++|
T Consensus 256 CfRDEdlR~DRQ-PEFTQvD~EMsF~~~~dim~liEdll~~~ws~~k~~~----------------------l~~PF~ri 312 (628)
T KOG2411|consen 256 CFRDEDLRADRQ-PEFTQVDMEMSFTDQEDIMKLIEDLLRYVWSEDKGIQ----------------------LPVPFPRI 312 (628)
T ss_pred hhcccccCcccC-CcceeeeeEEeccCHHHHHHHHHHHHHHhchhhcCCC----------------------CCCCcccc
Confidence 999999999999 9999999999999999999999999999998876521 11233333
Q ss_pred cHHHHHH-------------------------------------------------------------------------
Q 012529 306 SYTDAIE------------------------------------------------------------------------- 312 (461)
Q Consensus 306 t~~ea~~------------------------------------------------------------------------- 312 (461)
||+||++
T Consensus 313 TY~~Am~~YG~DKPD~Rf~l~l~dv~~~~~~~~~~~~~~d~l~~~~~vv~~~~~~~~s~~~~rk~~e~~~~~~~~~~~f~ 392 (628)
T KOG2411|consen 313 TYADAMDKYGSDKPDTRFPLKLKDVSESISKSFEEALLSDGLISVEIVVLGAKKYSNSNYKKRKIYESLGKSGFVGLPFP 392 (628)
T ss_pred cHHHHHHHhCCCCCcccCCcEecchHHhhhhhhhhhhhcCCccceEEEEeccccccchhhHHhHHHHHHhhcccccceee
Confidence 3333322
Q ss_pred ------------------------HHHHhccccccc--cccccc-------------CChHhhhchhhhcccCCCeeeee
Q 012529 313 ------------------------LLIKAKKKFEFL--VKWGCD-------------LQSEHERYLTEEAFGGCPVIVSD 353 (461)
Q Consensus 313 ------------------------~l~~~~~~~~~~--~~~g~~-------------l~~~~e~~l~e~~~~~~p~~i~~ 353 (461)
+.+..+..-.+. ..||.. +...+.+-+..+- ...++||+|
T Consensus 393 ~~~~~~~~w~~~~~~l~~e~~~~el~~~~~l~~~Div~~~~g~~~~~~~~LgrlRL~l~~l~~~~l~d~~-~~~~lWVvD 471 (628)
T KOG2411|consen 393 IEHDANKNWFKKFSSLTDEAVAIELIKQLGLAEGDIVLLCVGPKVSVNTPLGRLRLVLQDLLVKNLRDKS-KFSFLWVVD 471 (628)
T ss_pred eeccchhhhhhhchhhccchHHHHHHHHhCCCCCCEEEEeccCCccCCCchHHHHHHHHHHHhccccccc-cceEEEEEe
Confidence 111111110000 011110 0111111111111 125889999
Q ss_pred CCcc-------------CCccccccCCCc-------c--ceeccccccCCceeeechhhhcccHHHHHHHHHHc-CCCcc
Q 012529 354 YPKE-------------IKAFYMRQNDDG-------R--TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-KLNRD 410 (461)
Q Consensus 354 ~P~~-------------~~pf~~~~~~~~-------~--~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~-~~~~~ 410 (461)
||.. ++||.+++.+|- . ....|||++||+ ||+|||.|+|+++.|...++.. +++.+
T Consensus 472 FPLF~p~~E~~q~L~StHHPFTaP~~~Di~~L~s~p~~~rgqhYDlV~NGv-ElGGGSiRIhn~diQr~vLe~iLk~p~~ 550 (628)
T KOG2411|consen 472 FPLFSPWEEKNQRLESTHHPFTAPHPKDIDLLESAPEKIRGQHYDLVVNGV-ELGGGSIRIHNPDIQRYVLEDILKIPED 550 (628)
T ss_pred ccccCccccCCceeccccCCCCCCChhhhhHhhcCchhhhcceeeeEEccE-eecCceeEecCHHHHHHHHHHHhcCchh
Confidence 9985 689998765541 1 235799999998 9999999999999999999854 44444
Q ss_pred cH--HHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCC
Q 012529 411 SY--WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 459 (461)
Q Consensus 411 ~~--~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~ 459 (461)
.+ ++.|+|+.+|+|||||||+|+|||+|+|||++||||||+||++..+.
T Consensus 551 ~~s~gHLL~ALd~GaPPHGGiAlGlDRlvaml~~a~sIRDVIAFPKt~~G~ 601 (628)
T KOG2411|consen 551 AESKGHLLNALDMGAPPHGGIALGLDRLVAMLTGAPSIRDVIAFPKTTTGA 601 (628)
T ss_pred hhhHHHHHHHhhcCCCCCCceeecHHHHHHHHcCCCchheeeeccccCCcc
Confidence 34 47889999999999999999999999999999999999999987653
|
|
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-68 Score=534.22 Aligned_cols=296 Identities=21% Similarity=0.265 Sum_probs=239.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceee--eecCCCcccccCCccccCCCccccCcCcce
Q 012529 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV--TTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (461)
Q Consensus 142 ~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v--~~~~~~~~~~~~s~~~~l~~~~~~~~~~~r 219 (461)
+.++++|++||++++++|+||.++||+||+||+|+++++++++++|.+ .+++. ..+|++||.+.++++.+ ++++|
T Consensus 2 ~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~-~~yL~~Spql~~k~ll~--~g~~~ 78 (329)
T cd00775 2 EEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDM-DLYLRIAPELYLKRLIV--GGFER 78 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCc-ceeeccCHHHHHHHHHh--cCCCc
Confidence 567899999999999999999999999999999999888888899977 34443 46788888766544332 36899
Q ss_pred eEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhc
Q 012529 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 299 (461)
Q Consensus 220 VfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 299 (461)
||+||||||||++ ++||||||||||||++|.|++|+|+++|++|+++++.+.+.+ ++.+.+.. ....
T Consensus 79 vf~i~~~FR~E~~-~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~--~~~~~~~~----------~~~~ 145 (329)
T cd00775 79 VYEIGRNFRNEGI-DLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKT--KIEYGGKE----------LDFT 145 (329)
T ss_pred EEEEeccccCCCC-CCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCc--eeecCCcc----------ccCC
Confidence 9999999999999 589999999999999999999999999999999999987643 23222110 0123
Q ss_pred CCCccccHHHHHHHHHHhcc---------------------cccccccccccCChHhhhchhhhcccCCCeeeeeCCccC
Q 012529 300 RDFVQLSYTDAIELLIKAKK---------------------KFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 358 (461)
Q Consensus 300 ~~~~~it~~ea~~~l~~~~~---------------------~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~ 358 (461)
.||+++||.||++.+..... +++....|+..++..+++++.+.+ + +|+||+|||..+
T Consensus 146 ~pf~rity~eA~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~~-~-~p~fi~~yP~~~ 223 (329)
T cd00775 146 PPFKRVTMVDALKEKTGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGKLLDKLFEEFVEPTL-I-QPTFIIDHPVEI 223 (329)
T ss_pred CCceEEEHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcccc-C-CCEEEECCChHh
Confidence 58999999999986632111 010111244444555566655544 4 799999999999
Q ss_pred CccccccCCCccceeccccccCCceeeechhhhcccHHHHHHHHHHc------CCCccc--HHHHHHHhccCCCCCcccc
Q 012529 359 KAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS--YWWYLDLRHYGSVPHAGFG 430 (461)
Q Consensus 359 ~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~------~~~~~~--~~~yl~a~~~G~pP~gG~g 430 (461)
+|||+..++|+++++|||||++|+ ||+||++|++++++|++++++. +.+++. .+|||+|++||+|||||||
T Consensus 224 ~~f~~~~~~~~~~~~rfdl~~~G~-Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~g 302 (329)
T cd00775 224 SPLAKRHRSNPGLTERFELFICGK-EIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTGGLG 302 (329)
T ss_pred CcCcCcCCCCCCeeEEEEeEECCE-EEEcccchhCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHCCCCCCCcEE
Confidence 999986666678899999999998 9999999999999999998653 565543 4899999999999999999
Q ss_pred ccHHHHHHHHcCCCCccccccCCCCC
Q 012529 431 LGFERLVQFATGVENIRDAIPFPRTP 456 (461)
Q Consensus 431 iGidRLvm~l~g~~~Irdv~~FPr~~ 456 (461)
||+|||+|+++|.+|||||++||++.
T Consensus 303 lGleRL~m~~~g~~~Irdv~~Fp~~~ 328 (329)
T cd00775 303 IGIDRLVMLLTDSNSIRDVILFPAMR 328 (329)
T ss_pred ecHHHHHHHHcCCCcHHhcccCCCCC
Confidence 99999999999999999999999975
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=521.90 Aligned_cols=287 Identities=22% Similarity=0.279 Sum_probs=241.5
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEecceeecC-CCCCCCcceeeeecCC----CcccccCCccccCCCccccCcCcceeEE
Q 012529 148 ARVRNALAYATHKFFQENGFIWISSPIITAS-DCEGAGEQFCVTTLIP----SSREAAESPVDAIPKTKDGLIDWSQVYT 222 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~-~~eg~~~~F~v~~~~~----~~~~~~~s~~~~l~~~~~~~~~~~rVfe 222 (461)
+++||.+++++|+||.++||+||+||+|+++ .+|+++++|.++|++. ...+|++||++.++++.++ +++||||
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~--g~~rVfe 78 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAA--GSGPIFQ 78 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhc--cCCCEEE
Confidence 5789999999999999999999999999998 5678899999988763 3567888887766544333 5899999
Q ss_pred EecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCC
Q 012529 223 FGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF 302 (461)
Q Consensus 223 I~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 302 (461)
||||||||++ ++||||||||||||++|.|++|+|+++|++++++++.+ ..+|...++.+++++..+.++
T Consensus 79 igp~FRaE~~-~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~~----------~~~~~~it~~ea~~~~~~~~~ 147 (304)
T TIGR00462 79 ICKVFRNGER-GRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGDP----------FAPWERLSYQEAFLRYAGIDP 147 (304)
T ss_pred EcCceeCCCC-CCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHhc----------CCCcEEEEHHHHHHHHhCCCc
Confidence 9999999999 58999999999999999999999999999999998752 123333455556666666666
Q ss_pred ccccHHHHHHHHHHhcccccccccccccCChHhhhchhh---hcc-cCCCeeeeeCCccCCccccccCCCccceeccccc
Q 012529 303 VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAF-GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDML 378 (461)
Q Consensus 303 ~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e---~~~-~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~ 378 (461)
...+.+++.+++++.|.. ..++.+++..+|+++.+ +.+ .++|+||+|||..++|||+..+++++.++||||+
T Consensus 148 ~~~~~~~~~~~~~~~g~~----~~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP~~~~~~~~~~~~~~~~~~rfdl~ 223 (304)
T TIGR00462 148 LTASLDELAAAAAAHGVR----ASEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYPASQAALARISPDDPRVAERFELY 223 (304)
T ss_pred ccCCHHHHHHHHHHcCCC----CCCCCChhHHHHHHHHHHHHHhcCCCCCEEEEcCccccCcCccccCCCCCeeEEEEEE
Confidence 666777777777777654 34667888899988753 333 2479999999999999987555566788999999
Q ss_pred cCCceeeechhhhcccHHHHHHHHHH-------cCCCcccH-HHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccc
Q 012529 379 VPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 450 (461)
Q Consensus 379 ~~G~~Ei~~g~~r~~~~~~~~~~~~~-------~~~~~~~~-~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~ 450 (461)
++|+ ||+||++|++++++|++++++ .|+++..+ +|||+|++||+|||||||||||||+|++||.+|||||+
T Consensus 224 ~~G~-Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~yl~~~~~G~pP~~G~GiGieRL~m~l~g~~~Ir~vi 302 (304)
T TIGR00462 224 IKGL-ELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGLPECSGVALGVDRLLMLALGADSIDDVL 302 (304)
T ss_pred ECCE-EEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHcCCCCCCceEEcHHHHHHHHhCCCchhhcc
Confidence 9997 999999999999999998865 68888888 68999999999999999999999999999999999999
Q ss_pred cC
Q 012529 451 PF 452 (461)
Q Consensus 451 ~F 452 (461)
+|
T Consensus 303 ~F 304 (304)
T TIGR00462 303 AF 304 (304)
T ss_pred cC
Confidence 98
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. |
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-67 Score=506.83 Aligned_cols=262 Identities=25% Similarity=0.427 Sum_probs=228.5
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecC-CCcccccCCccccCCCccccCcCcceeEEEecc
Q 012529 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLI-PSSREAAESPVDAIPKTKDGLIDWSQVYTFGPT 226 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~-~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~ 226 (461)
+++||++++++|+||.++||+||+||+|+++++|+++++|.+.|+. ....+|.+||.+.+..+. .++++|||+|+||
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~--~~~~~~vf~i~~~ 78 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLM--VGGLDRVFEINRN 78 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHH--hcCCCcEEEEecc
Confidence 5789999999999999999999999999999999999999998772 224677888765432222 2368999999999
Q ss_pred cccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCcccc
Q 012529 227 FRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLS 306 (461)
Q Consensus 227 FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it 306 (461)
||+| ..+.||++||||||||++|.|++|+|+++|++|+++++.+.+.+..++... . ..++.||++||
T Consensus 79 fR~e-~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~~-----------~-~~~~~~~~rit 145 (269)
T cd00669 79 FRNE-DLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFE-----------L-EDFGLPFPRLT 145 (269)
T ss_pred eeCC-CCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccccccc-----------c-cccCCCceEee
Confidence 9999 558999999999999999999999999999999999999987765544211 0 12346899999
Q ss_pred HHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCC-CccceeccccccCCceee
Q 012529 307 YTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGEL 385 (461)
Q Consensus 307 ~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~Ei 385 (461)
|.||++++. +|+||+|||...+|||++.++ ++++++||||+++|+ ||
T Consensus 146 ~~ea~~~~~-------------------------------~p~fi~d~P~~~~~fy~~~~~~~~~~~~~fdl~~~g~-Ei 193 (269)
T cd00669 146 YREALERYG-------------------------------QPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGV-EV 193 (269)
T ss_pred HHHHHHHhC-------------------------------CceEEECCCcccCCCCCCcCCCCCCeEEEEEEeeCCE-EE
Confidence 999987632 499999999999999987765 457899999999996 99
Q ss_pred echhhhcccHHHHHHHHHHcCCCcc----cHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCC
Q 012529 386 IGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 456 (461)
Q Consensus 386 ~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~ 456 (461)
+||++|+|+++.|.+++++++++++ .++|||+|++||+|||||||||+|||+|++||.+|||||++|||++
T Consensus 194 ~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGieRL~m~~~g~~~Irdv~~FPr~~ 268 (269)
T cd00669 194 GNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPKMR 268 (269)
T ss_pred eeCchhcCCHHHHHHHHHHhCcChhhccccHHHHHHHHHcCCCCCceEeeHHHHHHHHHhCCCcHHHcccCCCCC
Confidence 9999999999999999999999988 8999999999999999999999999999999999999999999986
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-62 Score=476.63 Aligned_cols=270 Identities=28% Similarity=0.453 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecC--CCcccccCCccccCCCccccCcCcceeEEEec
Q 012529 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLI--PSSREAAESPVDAIPKTKDGLIDWSQVYTFGP 225 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~--~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~ 225 (461)
+++||++++++|+||.++||+||+||+|++++++|++. |.+.+.. ....+|++||++.++.+.++ +++|||+|||
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~-f~~~~~~~~~~~~~L~~Spql~lk~ll~~--g~~~v~~i~~ 77 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSRLHPGKFYALPQSPQLFKQLLMVS--GFDRYFQIAR 77 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCC-ceeccccCCCceeecccCHHHHHHHHHhc--CcCcEEEecc
Confidence 57899999999999999999999999999999988765 8776653 22334788876655433333 5899999999
Q ss_pred ccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccc
Q 012529 226 TFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQL 305 (461)
Q Consensus 226 ~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~i 305 (461)
|||+|++++.|| +||||||||++|.|++|+|+++|++|+++++.+.+. ..+.||+++
T Consensus 78 ~fR~e~~~~~r~-~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~----------------------~~~~p~~ri 134 (280)
T cd00777 78 CFRDEDLRADRQ-PEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGV----------------------ELTTPFPRM 134 (280)
T ss_pred ceeCCCCCCCcc-ceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCC----------------------CCCCCCcee
Confidence 999999987777 599999999999999999999999999999887642 123589999
Q ss_pred cHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeee-CCccCC---ccccccCCCccceeccccccCC
Q 012529 306 SYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD-YPKEIK---AFYMRQNDDGRTVAAMDMLVPR 381 (461)
Q Consensus 306 t~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~-~P~~~~---pf~~~~~~~~~~~~~fdl~~~G 381 (461)
||.||++.+ +. .+.|+.|+.. .+..+. .++++++++ ||.... |++ +.++++++++||||+++|
T Consensus 135 ty~eA~~~~---~~----~~~~~~d~~~-~~~~~~----~~~~~~~~~pf~~~~~~~~~~~-~~~~~~~~~~~fdl~~~G 201 (280)
T cd00777 135 TYAEAMERY---GF----KFLWIVDFPL-FEWDEE----EGRLVSAHHPFTAPKEEDLDLL-EKDPEDARAQAYDLVLNG 201 (280)
T ss_pred eHHHHHHHh---CC----CCccccCCcc-cCChhH----HHHHHHHhCCCcCCCcccchhh-hcCCccCeeEEEEEEeCC
Confidence 999999864 22 2346655431 010000 113344444 443322 232 223333689999999999
Q ss_pred ceeeechhhhcccHHHHHHHHHHcCCC----cccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCC
Q 012529 382 IGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 457 (461)
Q Consensus 382 ~~Ei~~g~~r~~~~~~~~~~~~~~~~~----~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~ 457 (461)
+ ||+||++|+|+++.|++++++.|++ ++.++|||+|++||+|||||||||||||+|++||.+|||||++|||+.+
T Consensus 202 ~-Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G~giGidRL~m~~~g~~~Irdv~~FPr~~~ 280 (280)
T cd00777 202 V-ELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDVIAFPKTQN 280 (280)
T ss_pred E-EEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCeEeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 7 9999999999999999999999998 4568999999999999999999999999999999999999999999864
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=478.87 Aligned_cols=287 Identities=18% Similarity=0.168 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCC-CCCcceeeeecCC-----CcccccCCccccCCCccccCcCcc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGEQFCVTTLIP-----SSREAAESPVDAIPKTKDGLIDWS 218 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~e-g~~~~F~v~~~~~-----~~~~~~~s~~~~l~~~~~~~~~~~ 218 (461)
..+|++|+++++++|+||.++||+||+||+|+..+.. ....+|.+.|+.. ...+|.+||...++++.+ .+++
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la--~~~~ 79 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLA--AGSG 79 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhh--cccc
Confidence 4689999999999999999999999999999976653 4457888877621 235677887766554333 2488
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhh
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 298 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 298 (461)
|||+||||||||++ +.||++||||||||++|.|++|+|+++|+||++++.. .+|...+..+.++++.
T Consensus 80 rvf~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~------------~~~~~i~~~eaf~~~~ 146 (306)
T PRK09350 80 PIFQICKSFRNEEA-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC------------EPAESLSYQQAFLRYL 146 (306)
T ss_pred ceEEecceeecCCC-CCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc------------CCceEEEHHHHHHHHh
Confidence 99999999999999 8999999999999999999999999999999998752 1122223344455555
Q ss_pred cCCCccccHHHHHHHHHHhcccccccccccccCChHhhhch---hhhc-ccCCCeeeeeCCccCCccccccCCCccceec
Q 012529 299 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL---TEEA-FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 374 (461)
Q Consensus 299 ~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l---~e~~-~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~ 374 (461)
+.+....++.++.+++.+.|.. .....+.++....++.+ +++. ..+.|+||+|||.+++|||++.++++++++|
T Consensus 147 g~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~l~~~~ve~~l~~~~p~fi~~yP~~~~~~a~~~~~~~~~~~r 224 (306)
T PRK09350 147 GIDPLSADKTQLREVAAKLGLS--NIADEEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQAALAKISTEDHRVAER 224 (306)
T ss_pred CCCCCcCCHHHHHHHHHHcCCC--CcCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEcCccccCccccccCCCCCeeEE
Confidence 5555555666666666655541 00112223333333322 3433 3236999999999999998765566678999
Q ss_pred cccccCCceeeechhhhcccHHHHHHHHHH-------cCCCcccH-HHHHHHhccCCCCCccccccHHHHHHHHcCCCCc
Q 012529 375 MDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 446 (461)
Q Consensus 375 fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-------~~~~~~~~-~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~I 446 (461)
||||++|+ ||+||++|++|+++|++++++ .|.++.++ +|||+|++||+|||||||||||||+|++||++||
T Consensus 225 fdl~i~G~-Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~~G~pp~~G~giGidRL~m~~~g~~~I 303 (306)
T PRK09350 225 FEVYFKGI-ELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAGLPDCSGVALGVDRLIMLALGAESI 303 (306)
T ss_pred EEEEECCE-EEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcHHHHHHHHcCCCCCCceEecHHHHHHHHcCCCCc
Confidence 99999997 999999999999999999864 67888888 5699999999999999999999999999999999
Q ss_pred ccc
Q 012529 447 RDA 449 (461)
Q Consensus 447 rdv 449 (461)
|||
T Consensus 304 rdv 306 (306)
T PRK09350 304 SEV 306 (306)
T ss_pred ccC
Confidence 997
|
|
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-52 Score=388.47 Aligned_cols=290 Identities=21% Similarity=0.224 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CCCCcceeeeecCCC-----cccccCCccccCCCccccCcCcc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPS-----SREAAESPVDAIPKTKDGLIDWS 218 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~~~F~v~~~~~~-----~~~~~~s~~~~l~~~~~~~~~~~ 218 (461)
.+.+..|+.|+++||.||.++||+||+||.|+.++. +..-.+|.+.+.+.. ..|+.+||++.++++.+. |-.
T Consensus 13 ~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAa--g~~ 90 (322)
T COG2269 13 IDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAA--GSG 90 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHc--cCC
Confidence 445899999999999999999999999999998876 456688998877542 246789999988876543 468
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhh
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 298 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 298 (461)
++||||+|||||+. +++|+|||||||||..+.||..+|+.+.+|++.++.... .+.+ +..+.+....
T Consensus 91 ~ifql~kvfRN~E~-G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~~---~E~l---------s~~eaF~r~~ 157 (322)
T COG2269 91 PIFQLGKVFRNEEM-GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECVE---AERL---------SYQEAFLRYL 157 (322)
T ss_pred cchhhhHHHhcccc-cccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHccCC---ccee---------eHHHHHHHHh
Confidence 99999999999985 899999999999999999999999999999998876421 0111 1122222333
Q ss_pred cCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchh---h-hcccCCCeeeeeCCccCCccccccCCCccceec
Q 012529 299 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT---E-EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 374 (461)
Q Consensus 299 ~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~---e-~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~ 374 (461)
+.+.....-++..+.+++.|+... -.++.++.+.+.++ | +++.++|+||+|||..+++++...+.|+..++|
T Consensus 158 gid~l~~~~~~L~~~~~~~~l~~~----~~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP~~qaaLA~i~~~D~rVAER 233 (322)
T COG2269 158 GIDPLSADKTELREAAAKLGLSAA----TDEDWDTLLQLLFVEGVEPNLGKERPTFLYHFPASQAALAQISTGDPRVAER 233 (322)
T ss_pred CCCcccccHHHHHHHHHhcCCCCC----CccCHHHHHHHHHHhhcCcccCCCCceEEEeCcHHHHHhhccCCCCcchhhh
Confidence 333222112222222333333311 12234455555443 2 345568999999999999999877778888899
Q ss_pred cccccCCceeeechhhhcccHHHHHHHHHH-------cCCCcccH-HHHHHHhccCCCCCccccccHHHHHHHHcCCCCc
Q 012529 375 MDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 446 (461)
Q Consensus 375 fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~-------~~~~~~~~-~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~I 446 (461)
||||+.|+ ||+||+-+.+|+++|+++++. .+...-++ +.||.|+.. ||||+|+++|+|||+|+++|.++|
T Consensus 234 FElY~kGi-ELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Ala~-mP~cSGvALG~DRLvmLalg~~~i 311 (322)
T COG2269 234 FELYYKGI-ELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALAR-MPPCSGVALGFDRLVMLALGAESI 311 (322)
T ss_pred hhheeeee-eecccchhcCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHh-CCCcccceecHHHHHHHHcCcchH
Confidence 99999999 999999999999999999853 23332333 779999998 999999999999999999999999
Q ss_pred cccccCCCC
Q 012529 447 RDAIPFPRT 455 (461)
Q Consensus 447 rdv~~FPr~ 455 (461)
.||+.||..
T Consensus 312 ~~Vi~f~v~ 320 (322)
T COG2269 312 DDVIAFPVA 320 (322)
T ss_pred HHHhhcccc
Confidence 999999975
|
|
| >cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=171.83 Aligned_cols=122 Identities=18% Similarity=0.354 Sum_probs=100.6
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc-hhhhhhcCCCCCcEEEEE
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~v~ 89 (461)
++.++++... ..|++|+|+|||+++|.+|+++|++|+|++|. +|||++.+..+ +..++. |+.||+|.|+
T Consensus 2 ~~~~~~~~~~------~~g~~V~i~Gwv~~~R~~gk~~Fi~LrD~~g~--~Q~v~~~~~~~~~~~~~~--l~~gs~V~V~ 71 (135)
T cd04317 2 THYCGELRES------HVGQEVTLCGWVQRRRDHGGLIFIDLRDRYGI--VQVVFDPEEAPEFELAEK--LRNESVIQVT 71 (135)
T ss_pred ceehhhCChh------HCCCEEEEEEeEehhcccCCEEEEEEecCCee--EEEEEeCCchhHHHHHhC--CCCccEEEEE
Confidence 4667777653 57899999999999999999999999999964 99999865433 556677 9999999999
Q ss_pred eeEeecCC-------CCccEEEEEeEEEEeccCCCCCCCCccc---CChhhhhcCccccCCCHH
Q 012529 90 GNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNT 143 (461)
Q Consensus 90 G~~~~~~~-------~~~~~el~~~~i~vl~~~~~~~Pl~~~~---~~~~~~r~~r~l~~R~~~ 143 (461)
|++.+++. ..+++||.++++++|++| .++|+..++ .+.++..+||||++|++.
T Consensus 72 G~~~~~~~~~~~~~~~~~~~El~~~~i~vl~~~-~~lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 72 GKVRARPEGTVNPKLPTGEIEVVASELEVLNKA-KTLPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred EEEECCCccccCCCCCCCcEEEEEeEEEEEECC-CCCCCccccccCCCHHHhhhcceeecCCCC
Confidence 99987643 345799999999999999 578887654 356677799999999863
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh |
| >cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-20 Score=156.10 Aligned_cols=101 Identities=27% Similarity=0.490 Sum_probs=89.3
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCC--CcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeE
Q 012529 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (461)
Q Consensus 31 ~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~--~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~ 108 (461)
+|+|+|||+++|.+|+++|++|||++|. +|||++.+ ...|+.++. |+.||+|.|+|++.+++...+++||.+++
T Consensus 1 ~V~v~Gwv~~~R~~gk~~Fi~lrD~~g~--iQ~v~~~~~~~~~~~~~~~--l~~~s~v~V~G~v~~~~~~~~~~Ei~~~~ 76 (103)
T cd04319 1 KVTLAGWVYRKREVGKKAFIVLRDSTGI--VQAVFSKDLNEEAYREAKK--VGIESSVIVEGAVKADPRAPGGAEVHGEK 76 (103)
T ss_pred CEEEEEEEEeEEcCCCeEEEEEecCCee--EEEEEeCCCCHHHHHHHhC--CCCCCEEEEEEEEEECCCCCCCEEEEEEE
Confidence 3899999999999999999999999975 99999865 234566777 99999999999999988877889999999
Q ss_pred EEEeccCCCCCCCCcccCChhhhhcCccc
Q 012529 109 IVLVGKSDPSYPIQKKRVSREFLRTKAHL 137 (461)
Q Consensus 109 i~vl~~~~~~~Pl~~~~~~~~~~r~~r~l 137 (461)
++++|+|. ++|++++. +.++++++|||
T Consensus 77 i~vl~~a~-~~pi~~~~-~~~~~~~~rhL 103 (103)
T cd04319 77 LEIIQNVE-FFPITEDA-SDEFLLDVRHL 103 (103)
T ss_pred EEEEecCC-CCccCCCC-CHHHHhhccCC
Confidence 99999996 69998764 88999999996
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. |
| >cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=151.93 Aligned_cols=102 Identities=19% Similarity=0.368 Sum_probs=87.6
Q ss_pred eeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhhhhhcCCCCCcEEEEE
Q 012529 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~v~ 89 (461)
++.++.+. ..|++|+|+|||+++|.+|+++|++|||++|. +|||++.+. ..|+.++. |+.||+|.|+
T Consensus 2 ~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~es~V~V~ 71 (108)
T cd04316 2 YSAEITPE------LDGEEVTVAGWVHEIRDLGGIKFVILRDREGI--VQVTAPKKKVDKELFKTVRK--LSRESVISVT 71 (108)
T ss_pred ChhhCchh------hCCCEEEEEEEEEeeeccCCeEEEEEecCCee--EEEEEeCCCCCHHHHHHHhC--CCCcCEEEEE
Confidence 45666643 57899999999999999999999999999974 999998653 23666777 9999999999
Q ss_pred eeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcc
Q 012529 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK 124 (461)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~ 124 (461)
|++.+++...+++||+++++++||+|+.++|++.+
T Consensus 72 G~v~~~~~~~~~~Ei~~~~i~il~~~~~~~P~~~~ 106 (108)
T cd04316 72 GTVKAEPKAPNGVEIIPEEIEVLSEAKTPLPLDPT 106 (108)
T ss_pred EEEEeCCCCCCCEEEEEeEEEEEeCCCCCCCcCcC
Confidence 99999988777899999999999999877998654
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes. |
| >cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.4e-19 Score=147.54 Aligned_cols=104 Identities=21% Similarity=0.311 Sum_probs=82.6
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEe
Q 012529 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (461)
Q Consensus 31 ~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~ 107 (461)
+|+|+|||+++|.+|+++|++|+|+++ .+|||++.+. ..|..+. ..|+.||+|.|+|++.+++.+ ++||.++
T Consensus 1 ~v~v~GwV~~~R~~g~~~Fi~lrd~~~--~lQ~v~~~~~~~~~~~~~~~-~~l~~g~~V~v~G~v~~~~~g--~~El~~~ 75 (108)
T cd04322 1 EVSVAGRIMSKRGSGKLSFADLQDESG--KIQVYVNKDDLGEEEFEDFK-KLLDLGDIIGVTGTPFKTKTG--ELSIFVK 75 (108)
T ss_pred CEEEEEEEEEEecCCCeEEEEEEECCe--EEEEEEECCCCCHHHHHHHH-hcCCCCCEEEEEEEEEecCCC--CEEEEeC
Confidence 388999999999999999999999995 5999998664 2344432 129999999999999998874 7999999
Q ss_pred EEEEeccCCCCCCCCccc-CChhhhhcCccccC
Q 012529 108 KIVLVGKSDPSYPIQKKR-VSREFLRTKAHLRP 139 (461)
Q Consensus 108 ~i~vl~~~~~~~Pl~~~~-~~~~~~r~~r~l~~ 139 (461)
+++|||+|..++|..... .+.++.+++||||+
T Consensus 76 ~~~ils~~~~plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 76 EFTLLSKSLRPLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred EeEEeeccCCCCCCCccCcCChhheeecccccC
Confidence 999999997444443322 24566668999875
|
These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein |
| >cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-17 Score=131.03 Aligned_cols=81 Identities=41% Similarity=0.808 Sum_probs=73.3
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEE
Q 012529 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (461)
Q Consensus 32 v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~v 111 (461)
|+|+|||+++|.+|+++|++|||+++.+++|||++++...|+.++. |+.||+|.|+|.+.+++.+++++||+++++++
T Consensus 2 v~v~Gwv~~~R~~g~~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~--l~~gs~V~v~G~v~~~~~~~~~~El~~~~i~i 79 (82)
T cd04318 2 VTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEILK--LSTGSSIRVEGVLVKSPGAKQPFELQAEKIEV 79 (82)
T ss_pred EEEEEeEEEEEcCCcEEEEEEECCCCccCEEEEEeCcccCHHHHhc--CCCceEEEEEEEEEeCCCCCCCEEEEEEEEEE
Confidence 8999999999999999999999999876899999877655666777 99999999999999998877899999999999
Q ss_pred ecc
Q 012529 112 VGK 114 (461)
Q Consensus 112 l~~ 114 (461)
++.
T Consensus 80 l~~ 82 (82)
T cd04318 80 LGE 82 (82)
T ss_pred ecC
Confidence 873
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial |
| >cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=137.41 Aligned_cols=90 Identities=24% Similarity=0.378 Sum_probs=75.7
Q ss_pred EEEEEEEEeeeecCC-CeEEEEEEcCccCccEEEEEeCCCc-----chhhhhhcCCCCCcEEEEEeeEeecCCC-----C
Q 012529 31 MIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQVKSGLITTGASIWIQGNVVPSQGS-----K 99 (461)
Q Consensus 31 ~v~v~G~v~~~R~~~-~~~Fi~l~D~s~~~~iQvv~~~~~~-----~~~~~~~~~l~~g~~V~v~G~~~~~~~~-----~ 99 (461)
+|+|+|||+++|.+| +++|++|||++|. +|||++.+.. .+..++. |+.||+|.|+|++.+++.. +
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg~--iQ~v~~~~~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~ 76 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYT--IQGVLAASAEGVSKQMVKWAGS--LSKESIVDVEGTVKKPEEPIKSCTQ 76 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCce--EEEEEeCCcccCCHHHHHHHhc--CCCccEEEEEEEEECCCCcccCCCc
Confidence 389999999999998 9999999999964 9999986531 2344567 9999999999999987653 2
Q ss_pred ccEEEEEeEEEEeccCCCCCCCCcc
Q 012529 100 QKVELKVNKIVLVGKSDPSYPIQKK 124 (461)
Q Consensus 100 ~~~el~~~~i~vl~~~~~~~Pl~~~ 124 (461)
+++||+++++++|++|..++|++.+
T Consensus 77 ~~~El~~~~i~il~~~~~~~P~~~~ 101 (102)
T cd04320 77 QDVELHIEKIYVVSEAAEPLPFQLE 101 (102)
T ss_pred CcEEEEEEEEEEEecCCCCCCCCCC
Confidence 6899999999999999767888643
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. |
| >cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.6e-17 Score=153.65 Aligned_cols=267 Identities=19% Similarity=0.182 Sum_probs=162.2
Q ss_pred HHHHHHHHhh-----hCCcEEEecceeecCCCC------CCCcc--eeeeecCCCcccccCCccccCCCccccCcCc---
Q 012529 154 LAYATHKFFQ-----ENGFIWISSPIITASDCE------GAGEQ--FCVTTLIPSSREAAESPVDAIPKTKDGLIDW--- 217 (461)
Q Consensus 154 i~~~iR~ff~-----~~gF~EV~TPiL~~~~~e------g~~~~--F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~--- 217 (461)
.|..+++||. +.+.+.|..|+++....+ |.-+| |.+...+........|...| ++......+|
T Consensus 3 aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f~~k~~~~~~~eiVhSLAKW-KR~aL~~y~f~~g 81 (309)
T cd00645 3 AIKFIKDFFQDNLAKELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSFKVKALPDATLEVVHSLAKW-KRLALARYGFSLG 81 (309)
T ss_pred hHHHHHHHHHHHHHHHhCeEEecCCeEEecCCCCccCCCCcccceEeecCCCCCceeEEeeehHHH-HHHHHHhcCCCCC
Confidence 3556666664 479999999999986654 22333 22222211111122333222 1100000112
Q ss_pred ceeEEEeccccc-CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhh
Q 012529 218 SQVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLST 296 (461)
Q Consensus 218 ~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 296 (461)
+-+|+=..+.|. |+. +..|.----|.|||.....-+.-++.+.+.++.++..+......-...+. .+..
T Consensus 82 eGlytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te~~~~~~y~---------~~~~ 151 (309)
T cd00645 82 EGLYTDMNAIRPDEDL-DNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKETELEVNEKYP---------QLEP 151 (309)
T ss_pred ceeccCCccccCCccc-CccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHch---------hhhh
Confidence 448888888885 665 68999889999999887666666777777777777666543211000010 1111
Q ss_pred hhcCCCccccHHHHHHHHHHhcccccccccccccC-ChHhhhchhhhcccCCCeeeeeCCccCC---ccccccCCCccce
Q 012529 297 VAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL-QSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQNDDGRTV 372 (461)
Q Consensus 297 ~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l-~~~~e~~l~e~~~~~~p~~i~~~P~~~~---pf~~~~~~~~~~~ 372 (461)
.+.. .|++-.+.++.... . +| ..+.|..+++++ ..|||+.--..++ |--.+..+.+.+.
T Consensus 152 ~Lp~---~i~FitsqeL~~~Y----------P-~l~~keRE~~i~ke~---gaVFi~~IG~~L~~g~~Hd~RapDYDDW~ 214 (309)
T cd00645 152 ILPE---EITFITSQELEDRY----------P-DLTPKEREDAICKEH---GAVFIIGIGGKLSDGKKHDGRAPDYDDWT 214 (309)
T ss_pred cCCC---ceEEecHHHHHHHC----------C-CCCHHHHHHHHHHHh---CcEEEEeccCcCCCCCcCCCCCCCCcCcc
Confidence 2222 33433333333221 1 12 235676677655 4688887554432 2222222223344
Q ss_pred ecccccc------CCceeeechhhhcccHHHHHHHHHHcC-CCcccHHHHHHHhccC-CCCCccccccHHHHHHHHcCCC
Q 012529 373 AAMDMLV------PRIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVE 444 (461)
Q Consensus 373 ~~fdl~~------~G~~Ei~~g~~r~~~~~~~~~~~~~~~-~~~~~~~~yl~a~~~G-~pP~gG~giGidRLvm~l~g~~ 444 (461)
..=|+++ ..+ ||.+|++|.++ +.+.++++..| .+...+.| ++++..| +|||+|+|||+|||+|+|+|..
T Consensus 215 LNGDil~w~~~l~~a~-ELSSmGiRVde-e~L~~Ql~~~g~~dr~~l~~-h~~ll~g~LP~TiGgGIGqsRL~M~LL~k~ 291 (309)
T cd00645 215 LNGDILVWNPVLQRAF-ELSSMGIRVDE-ESLQKQLKLAGDEDRLELPF-HKMLLNGELPQTIGGGIGQSRLCMFLLQKA 291 (309)
T ss_pred ccceEEEEchhcCcee-eecCcceEecH-HHHHHHHHHcCCCccccCHH-HHHHHcCCCCccccccccHHHHHHHHhccc
Confidence 3334443 256 99999999999 99999999988 56677776 9998888 8999999999999999999999
Q ss_pred Ccccccc
Q 012529 445 NIRDAIP 451 (461)
Q Consensus 445 ~Irdv~~ 451 (461)
+|.+|.+
T Consensus 292 HIgEVqa 298 (309)
T cd00645 292 HIGEVQA 298 (309)
T ss_pred hhcceee
Confidence 9999986
|
AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB. |
| >cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-17 Score=130.21 Aligned_cols=81 Identities=20% Similarity=0.391 Sum_probs=71.4
Q ss_pred EEEEEEEEeeeec-CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCC----ccEEEE
Q 012529 31 MIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK----QKVELK 105 (461)
Q Consensus 31 ~v~v~G~v~~~R~-~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~----~~~el~ 105 (461)
+|+|+|||+++|. +|+++|++|||++| ..+||+++++...|+.++. |+.||+|.|+|++.+++.+. +++||.
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g-~~iQvv~~~~~~~~~~~~~--l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~ 77 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNG-DIIQLVSTAKKDAFSLLKS--ITAESPVQVRGKLQLKEAKSSEKNDEWELV 77 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCC-CEEEEEECCCHHHHHHHhc--CCCCcEEEEEEEEEeCCCcCCCCCCCEEEE
Confidence 3899999999999 69999999999998 4699999876556777777 99999999999999988654 789999
Q ss_pred EeEEEEecc
Q 012529 106 VNKIVLVGK 114 (461)
Q Consensus 106 ~~~i~vl~~ 114 (461)
++++++|++
T Consensus 78 ~~~i~il~~ 86 (86)
T cd04321 78 VDDIQTLNA 86 (86)
T ss_pred EEEEEEecC
Confidence 999999984
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for |
| >PTZ00213 asparagine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-16 Score=150.42 Aligned_cols=274 Identities=17% Similarity=0.135 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHhhh-----CCcEEEecceeecCCCCC------CCcc--eeeeecCCCcccccCCcccc----CCC
Q 012529 147 VARVRNALAYATHKFFQE-----NGFIWISSPIITASDCEG------AGEQ--FCVTTLIPSSREAAESPVDA----IPK 209 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~-----~gF~EV~TPiL~~~~~eg------~~~~--F~v~~~~~~~~~~~~s~~~~----l~~ 209 (461)
.++.....|..+++||.. .+.+.|..|+++....+- .-+| |.+...+........|...| |++
T Consensus 7 ~~~~~q~aI~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~GlnDnLnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~ 86 (348)
T PTZ00213 7 AYIDLQEQILKVKQIFSEALAKELNLIRVEAPLLAEVGDGTQDNLSGVEKAVQVHVKGIPNSVFEVVHSLAKWKRLTLGE 86 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCeeEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCceeEEehhhHHHHHHHHHh
Confidence 455556677778888754 699999999999865531 1122 22222211111222333222 111
Q ss_pred ccccCcCcceeEEEeccccc-CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccc
Q 012529 210 TKDGLIDWSQVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEK 288 (461)
Q Consensus 210 ~~~~~~~~~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~ 288 (461)
+.- ..-+-+|+=.++.|. |+. +..|.----|.|||.....-+.-++.+.+.++.++..+......-...+.
T Consensus 87 y~f--~~geGlytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te~~~~~~yp----- 158 (348)
T PTZ00213 87 HKF--PVGEGIYTDMNALRVEEEL-DNIHSVYVDQWDWEMVIAPADRNLEYLKNTVRRLYAAIRKTEEAICNEYP----- 158 (348)
T ss_pred cCC--CCCceeeeccccccCCccc-CccceeEeccccHHHhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHch-----
Confidence 110 012448997888885 555 68999889999999987766666677777777776665533210000010
Q ss_pred hhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccC-ChHhhhchhhhcccCCCeeeeeCCccCC---ccccc
Q 012529 289 GIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL-QSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMR 364 (461)
Q Consensus 289 ~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l-~~~~e~~l~e~~~~~~p~~i~~~P~~~~---pf~~~ 364 (461)
.+...+.. .|++-.+.++++.. . +| ..+.|..++.++ ..|||+.--..++ |--.+
T Consensus 159 ----~l~~~Lp~---~I~FitsqeL~~~Y----------P-~lt~keRE~~i~ke~---gaVFi~~IG~~L~~G~~Hd~R 217 (348)
T PTZ00213 159 ----NLKRILPK---EITFLHTEHLLKMY----------P-NLSPKEREREIVKKY---GAVFLIGIGCKLSSGDTHDLR 217 (348)
T ss_pred ----hhhhcCCC---ceEEecHHHHHHHC----------C-CCCHHHHHHHHHHHh---CcEEEEeccCcCCCCCcCCCC
Confidence 01111111 22222222222210 0 11 122333333332 2344443222111 11001
Q ss_pred cCCCccce-------------------------ecccccc-----CCceeeechhhhcccHHHHHHHHHHcC-CCcccHH
Q 012529 365 QNDDGRTV-------------------------AAMDMLV-----PRIGELIGGSQREERLEYLEGRLDELK-LNRDSYW 413 (461)
Q Consensus 365 ~~~~~~~~-------------------------~~fdl~~-----~G~~Ei~~g~~r~~~~~~~~~~~~~~~-~~~~~~~ 413 (461)
..+.+.+. ..=|+++ .--.||.+|++|+ +++.+.++++..| .+...+.
T Consensus 218 ApDYDDW~t~~~~~~~~~~~~~~~~~~~~~~~gLNGDilvw~~~l~~a~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~ 296 (348)
T PTZ00213 218 APDYDDWSSPVSASKIGFPTADPTMNSLMSLQGLNGDILVYNPVLDDVLELSSMGIRV-DAEALRRQLEITNNTDRLKCM 296 (348)
T ss_pred CCCcccccccccccccccccccccccccccccCccceEEEechhcCceeecCCcceEE-cHHHHHHHHHHcCCCccccCH
Confidence 00000010 1123322 2225999999999 9999999999998 5778899
Q ss_pred HHHHHhccC-CCCCccccccHHHHHHHHcCCCCcccccc
Q 012529 414 WYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIP 451 (461)
Q Consensus 414 ~yl~a~~~G-~pP~gG~giGidRLvm~l~g~~~Irdv~~ 451 (461)
||++ +..| +|+|+|+|||+|||+|+|+|..+|.+|.+
T Consensus 297 ~h~~-ll~g~LP~TiGGGIGqsRL~M~LL~k~HIgEVQ~ 334 (348)
T PTZ00213 297 WHQM-LLNGELPQTIGGGIGQSRLCMFMLRKKHIGEVQC 334 (348)
T ss_pred HHHH-HHcCCCCCcccccccHHHHHHHHhCcchhcceee
Confidence 9999 5556 89999999999999999999999999976
|
|
| >PRK05425 asparagine synthetase AsnA; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-16 Score=149.49 Aligned_cols=269 Identities=17% Similarity=0.123 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHhh-----hCCcEEEecceeecCCCCCC------Ccc--eeeeecCCCcccccCCcccc----CCCcccc
Q 012529 151 RNALAYATHKFFQ-----ENGFIWISSPIITASDCEGA------GEQ--FCVTTLIPSSREAAESPVDA----IPKTKDG 213 (461)
Q Consensus 151 Rs~i~~~iR~ff~-----~~gF~EV~TPiL~~~~~eg~------~~~--F~v~~~~~~~~~~~~s~~~~----l~~~~~~ 213 (461)
....|+.++++|. +.+.+.|..|+++....+-+ -+| |.+...+........|...| |+++.-
T Consensus 11 tq~aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~F~~k~~~~~~~eiVhSLAKWKR~aL~~y~f- 89 (327)
T PRK05425 11 TQQAISFVKDFFERQLAKKLNLIRVSAPLFVRVGSGLNDNLNGVEKPVSFKVKDLPDATFEVVHSLAKWKRLALKRYGF- 89 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhhCeeEecCCeEEcCCCCcccCCCCeecceEeeccCCCCCeeEEEeehHHHHHHHHHhcCC-
Confidence 3455566666664 47999999999998655421 222 22222211111122333222 111100
Q ss_pred CcCcceeEEEeccccc-CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhh
Q 012529 214 LIDWSQVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 292 (461)
Q Consensus 214 ~~~~~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 292 (461)
..-+-+|+=..+.|. |+. +..|.----|.|||.....-+.-++.+.+.++.++..+......-...+.
T Consensus 90 -~~geGlytdMnAiR~dE~l-d~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~ik~te~~~~~~y~--------- 158 (327)
T PRK05425 90 -SAGEGLYTDMNAIRPDEDL-DNTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKAIKATEKAVSKKYP--------- 158 (327)
T ss_pred -CCCceeccCCccccCCccc-CcccceEeccccHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhCc---------
Confidence 012348888888885 565 68999889999999987656666777777777777766543211000010
Q ss_pred hhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCC---ccccccCCCc
Q 012529 293 RLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQNDDG 369 (461)
Q Consensus 293 ~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~---pf~~~~~~~~ 369 (461)
.+ +.+.. .|++-.+.++.+. +...-..+.|..++..+ ..|||+.--..++ |--.+..+.+
T Consensus 159 ~~-~~Lp~---~i~FitsqeL~~~----------YP~l~~keRE~~i~ke~---gaVFi~~IG~~L~~g~~Hd~RapDYD 221 (327)
T PRK05425 159 LL-PFLPE---EITFITSQELEDR----------YPDLTPKEREDAIAKEY---GAVFLIGIGGKLSDGKPHDGRAPDYD 221 (327)
T ss_pred cc-ccCCC---ceEEecHHHHHHH----------CCCCCHHHHHHHHHHHh---CcEEEEeccCcCCCCCcCCCCCCCCc
Confidence 00 11111 2333333333222 11111245666677655 4688887554432 2222222323
Q ss_pred cceeccccccC------CceeeechhhhcccHHHHHHHHHHcC-CCcccHHHHHHHhccC-CCCCccccccHHHHHHHHc
Q 012529 370 RTVAAMDMLVP------RIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFAT 441 (461)
Q Consensus 370 ~~~~~fdl~~~------G~~Ei~~g~~r~~~~~~~~~~~~~~~-~~~~~~~~yl~a~~~G-~pP~gG~giGidRLvm~l~ 441 (461)
.+...=|+++- .+ ||.+|++|++ ++.+.++++..| .+...+.||+++ ..| +|||+|+|||+|||+|+|+
T Consensus 222 DW~LNGDilvw~~~l~~a~-ELSSmGiRVd-~e~L~~Qlk~~g~~dr~~l~~h~~l-l~g~LP~TiGgGIGqsRL~M~LL 298 (327)
T PRK05425 222 DWGLNGDILVWNPVLDDAF-ELSSMGIRVD-EEALKRQLKLTGDEDRLELEWHQAL-LNGELPLTIGGGIGQSRLCMLLL 298 (327)
T ss_pred CcccCceEEEEccccCcee-eecCcceEec-HHHHHHHHHHcCCCccccCHHHHHH-HhCCCCCcccccccHHHHHHHHh
Confidence 34433344432 56 9999999998 999999999998 577888999999 667 8999999999999999999
Q ss_pred CCCCcccccc
Q 012529 442 GVENIRDAIP 451 (461)
Q Consensus 442 g~~~Irdv~~ 451 (461)
|.++|.+|.+
T Consensus 299 ~k~HIgEVq~ 308 (327)
T PRK05425 299 QKAHIGEVQA 308 (327)
T ss_pred ccchhccccc
Confidence 9999999986
|
|
| >cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=127.04 Aligned_cols=80 Identities=29% Similarity=0.559 Sum_probs=71.0
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc-hhhhhhcCCCCCcEEEEEeeEeecCCC---CccEEEEE
Q 012529 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGS---KQKVELKV 106 (461)
Q Consensus 31 ~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~v~G~~~~~~~~---~~~~el~~ 106 (461)
+|+|+|||+++|.+|+++|++|||+++. +|++++.+... ++.++. |+.||+|.|+|++.+++.+ .+++||++
T Consensus 1 ~V~v~Gwv~~~R~~g~~~Fi~LrD~~~~--iQ~v~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~~Ei~~ 76 (84)
T cd04323 1 RVKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKS--LTQESSVEVTGEVKEDPRAKQAPGGYELQV 76 (84)
T ss_pred CEEEEEEEEEEecCCCcEEEEEEcCCeE--EEEEEcCCcchhHHHHhc--CCCcCEEEEEEEEEECCcccCCCCCEEEEE
Confidence 3899999999999999999999999975 99999865433 666777 9999999999999999877 78899999
Q ss_pred eEEEEecc
Q 012529 107 NKIVLVGK 114 (461)
Q Consensus 107 ~~i~vl~~ 114 (461)
+++++||+
T Consensus 77 ~~i~vl~~ 84 (84)
T cd04323 77 DYLEIIGE 84 (84)
T ss_pred EEEEEEcC
Confidence 99999984
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with |
| >cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-16 Score=124.66 Aligned_cols=80 Identities=25% Similarity=0.548 Sum_probs=70.0
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc--hhhhhhcCCCCCcEEEEEeeEeecCC---CCccEEEE
Q 012529 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--YDQVKSGLITTGASIWIQGNVVPSQG---SKQKVELK 105 (461)
Q Consensus 31 ~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~--~~~~~~~~l~~g~~V~v~G~~~~~~~---~~~~~el~ 105 (461)
.|+|+|||+++|.+|+++|++|||+++ .+|++++.+..+ ++.++. |+.||+|.|+|++.+++. .++++||.
T Consensus 1 ~V~i~Gwv~~~R~~g~~~Fi~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~--l~~~s~V~v~G~~~~~~~~~~~~~~~El~ 76 (85)
T cd04100 1 EVTLAGWVHSRRDHGGLIFIDLRDGSG--IVQVVVNKEELGEFFEEAEK--LRTESVVGVTGTVVKRPEGNLATGEIELQ 76 (85)
T ss_pred CEEEEEEEehhccCCCEEEEEEEeCCe--eEEEEEECCcChHHHHHHhC--CCCCCEEEEEeEEEECCCCCCCCCCEEEE
Confidence 389999999999999999999999996 499999876533 555667 999999999999999885 56789999
Q ss_pred EeEEEEecc
Q 012529 106 VNKIVLVGK 114 (461)
Q Consensus 106 ~~~i~vl~~ 114 (461)
++++++|++
T Consensus 77 ~~~i~il~~ 85 (85)
T cd04100 77 AEELEVLSK 85 (85)
T ss_pred EeEEEEECC
Confidence 999999985
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A |
| >TIGR00669 asnA aspartate--ammonia ligase, AsnA-type | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.3e-15 Score=141.50 Aligned_cols=274 Identities=18% Similarity=0.176 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHHHhhh-----CCcEEEecceeecCCCC------CCCcc--eeeeecCCCcccccCCccccCCCcccc
Q 012529 147 VARVRNALAYATHKFFQE-----NGFIWISSPIITASDCE------GAGEQ--FCVTTLIPSSREAAESPVDAIPKTKDG 213 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~-----~gF~EV~TPiL~~~~~e------g~~~~--F~v~~~~~~~~~~~~s~~~~l~~~~~~ 213 (461)
.++.....|..+++||.. .+.++|..|+++....+ |.-+| |.+...+........|...| ++....
T Consensus 4 ~~~~tq~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sGlnD~LnG~ErpV~f~~k~~~~~~~evVhSLAKW-KR~aL~ 82 (330)
T TIGR00669 4 AFILQQQQISFVKSTFTQQLEERLGLIEVQGPILSQVGDGTQDNLSGREKAVQVKVKAIPDAQFEVVHSLAKW-KRHTLA 82 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCCCcCCCCCeecceEeecCCCCCceeEEehhhHHH-HHHHHH
Confidence 355556677778888754 69999999999986554 11233 22221111111222333222 110000
Q ss_pred CcCc---ceeEEEeccccc-CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccch
Q 012529 214 LIDW---SQVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKG 289 (461)
Q Consensus 214 ~~~~---~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~ 289 (461)
..+| +-+|+=.++-|. |++-+..|.----|.|||.....-+.-++.+.+.++.+++.+..... .+. ..+
T Consensus 83 ~y~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy~~ik~te~-~~~--~~y---- 155 (330)
T TIGR00669 83 RHDFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIYAAIRATEA-AVS--ERF---- 155 (330)
T ss_pred hcCCCCCceeeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHHHHHHHHHH-HHH--Hhc----
Confidence 0112 348988888885 66236899988999999988765666667777777777666654321 110 000
Q ss_pred hhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccC-ChHhhhchhhhcccCCCeeeeeCCccCC---cccccc
Q 012529 290 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL-QSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQ 365 (461)
Q Consensus 290 ~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l-~~~~e~~l~e~~~~~~p~~i~~~P~~~~---pf~~~~ 365 (461)
.+...+.. .|++-.+.+++... . ++ ..+.|..+++++ ..|||+.--..++ |--.+.
T Consensus 156 ---~l~~~Lp~---~I~FitsqeL~~~Y----------P-~lt~keRE~~i~ke~---gaVFi~~IG~~L~~G~~Hd~RA 215 (330)
T TIGR00669 156 ---GLAPFLPD---QIHFVHSEELVSRY----------P-DLDSKGRERAICKEL---GAVFLIGIGGKLSDGKPHDVRA 215 (330)
T ss_pred ---CccccCCC---ceEEecHHHHHHHC----------C-CCCHHHHHHHHHHHh---CcEEEEeccCcCCCCCcCCCCC
Confidence 01111211 34443333333321 1 12 235566676655 3678776544332 221121
Q ss_pred CCCccce---------ecccccc------CCceeeechhhhcccHHHHHHHHHHcC-CCcccHHHHHHHhccC-CCCCcc
Q 012529 366 NDDGRTV---------AAMDMLV------PRIGELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-SVPHAG 428 (461)
Q Consensus 366 ~~~~~~~---------~~fdl~~------~G~~Ei~~g~~r~~~~~~~~~~~~~~~-~~~~~~~~yl~a~~~G-~pP~gG 428 (461)
.+.+.+. ..=|+++ ..+ ||.+.+.|. |.+.+.++++..| .+...+.||+++ ..| +|||+|
T Consensus 216 pDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~-ElSSMGIRV-d~~~L~~Qlk~~g~~dr~~l~~h~el-l~g~LP~TiG 292 (330)
T TIGR00669 216 PDYDDWTTPSELGYKGLNGDILVWNPVLGDAF-ELSSMGIRV-DEDALRHQLALTGDEDRLELEWHQDL-LNGELPQTIG 292 (330)
T ss_pred CCcccccccccccccCcCceEEEEchhcCcee-eeecceeEE-CHHHHHHHHHHcCCCccccCHHHHHH-HcCCCCcccc
Confidence 2212222 2234433 256 999999999 7888888999988 677889999999 667 899999
Q ss_pred ccccHHHHHHHHcCCCCcccccc
Q 012529 429 FGLGFERLVQFATGVENIRDAIP 451 (461)
Q Consensus 429 ~giGidRLvm~l~g~~~Irdv~~ 451 (461)
+|||+|||+|+|+|..+|.+|.+
T Consensus 293 GGIGqsRL~MfLL~k~HIgEVQ~ 315 (330)
T TIGR00669 293 GGIGQSRLAMLLLQLKHIGEVQA 315 (330)
T ss_pred ccccHHHHHHHHhccccccceee
Confidence 99999999999999999999976
|
The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer. |
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-13 Score=139.13 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=70.0
Q ss_pred CCHHHHHHHHH-----HHHHHHHHHHHhhhCCcEEEecceeecCCC------CCCC----cceeeeecCCCcccccCCcc
Q 012529 140 RTNTFGAVARV-----RNALAYATHKFFQENGFIWISSPIITASDC------EGAG----EQFCVTTLIPSSREAAESPV 204 (461)
Q Consensus 140 R~~~~~~~l~~-----Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg~~----~~F~v~~~~~~~~~~~~s~~ 204 (461)
|.+..++++.+ .+.+.+++|++|...||.||.||+|+.... .++. ..|.+ .. ...+..+..
T Consensus 190 r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i---de-el~LRpsLt 265 (417)
T PRK09537 190 RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV---DK-NFCLRPMLA 265 (417)
T ss_pred cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee---CC-ceEehhhhH
Confidence 77889999999 999999999999999999999999975321 1111 11211 11 111111100
Q ss_pred ccCCCcccc-C--cC-cceeEEEecccccCCCCCCCCccccccceeeeccC
Q 012529 205 DAIPKTKDG-L--ID-WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 251 (461)
Q Consensus 205 ~~l~~~~~~-~--~~-~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~ 251 (461)
..+...... . .. --|+|+||+|||+|.. +.+|++||+|++++....
T Consensus 266 PsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiGs 315 (417)
T PRK09537 266 PGLYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMGS 315 (417)
T ss_pred HHHHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeCC
Confidence 001000000 0 01 1379999999999986 688999999999998754
|
|
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-12 Score=130.42 Aligned_cols=104 Identities=21% Similarity=0.252 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhhhCCcEEEecceeecCC----------CCCCCcceeeeecCCCcccccCCccccCCCcccc-C--c
Q 012529 149 RVRNALAYATHKFFQENGFIWISSPIITASD----------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG-L--I 215 (461)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----------~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~-~--~ 215 (461)
.-.+.+...+|++|...||.||.||+|+... .+...+.|.+. . ...+..+....|...... . .
T Consensus 240 ~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~e---e-~lvLRPdLTPsLaR~La~N~~~l 315 (453)
T TIGR02367 240 DYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD---K-NFCLRPMLAPNLYNYLRKLDRAL 315 (453)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEec---C-ceEecccCHHHHHHHHHHhhhhc
Confidence 3457899999999999999999999997311 11112333321 1 011111110011100000 0 0
Q ss_pred C-cceeEEEecccccCCCCCCCCccccccceeeeccCC--HHHHH
Q 012529 216 D-WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LKDDM 257 (461)
Q Consensus 216 ~-~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d--~~dlm 257 (461)
. --|+|+||+|||+|.. +.+|+.||+|++++.+..+ +.|+.
T Consensus 316 ~~PqKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG~~atfaDle 359 (453)
T TIGR02367 316 PDPIKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGSGCTRENLE 359 (453)
T ss_pred cCCeeEEEEcCeEecCCC-CCCCcCeEEEEEEEEECCCCCHHHHH
Confidence 1 2389999999999987 6899999999999987653 54443
|
PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase. |
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.8e-12 Score=123.28 Aligned_cols=114 Identities=12% Similarity=0.089 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCC----CcccccCCccccCCCc---c-c---cCcC---c
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP----SSREAAESPVDAIPKT---K-D---GLID---W 217 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~----~~~~~~~s~~~~l~~~---~-~---~~~~---~ 217 (461)
..++..++++|.+.||.+++.|.+.+.--.= -.+|.-.++.. ++.++..+....+.++ + | +... =
T Consensus 114 ~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NF-DaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~P 192 (335)
T COG0016 114 TQTIEEIEDIFLGMGFTEVEGPEIETDFYNF-DALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKIP 192 (335)
T ss_pred HHHHHHHHHHHHHcCceeccCCcccccccch-hhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhHHHHHhCCCCC
Confidence 4788899999999999999999666522110 00010000000 0011111100001000 0 0 0000 2
Q ss_pred ceeEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHHH
Q 012529 218 SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYV 267 (461)
Q Consensus 218 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--~d~~dlm~~~e~li~~i 267 (461)
-|+|++|+|||+|.. +.+|+|||+|+|-=... .++.+|+..++++++.+
T Consensus 193 ~k~~~~grvyR~D~~-DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~ 243 (335)
T COG0016 193 IKIFSPGRVYRNDTV-DATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKF 243 (335)
T ss_pred ceEecccceecCCCC-CcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHh
Confidence 379999999999988 58999999999953332 35667666666665544
|
|
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.9e-12 Score=121.63 Aligned_cols=113 Identities=15% Similarity=0.237 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecC---------CCC-CC---CcceeeeecCC--Cccc-c--cCCcc--ccCCCcc
Q 012529 152 NALAYATHKFFQENGFIWISSPIITAS---------DCE-GA---GEQFCVTTLIP--SSRE-A--AESPV--DAIPKTK 211 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~---------~~e-g~---~~~F~v~~~~~--~~~~-~--~~s~~--~~l~~~~ 211 (461)
+.+.+.+|++|...||.|+.+|.+.+. +.. .+ .+.|-+..... .... + ++++. ..|.
T Consensus 20 ~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~--- 96 (247)
T PF01409_consen 20 TKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLN--- 96 (247)
T ss_dssp HHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHH---
Confidence 478889999999999999999999651 111 11 12232210000 0000 0 01110 0000
Q ss_pred ccCcCcceeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHHH
Q 012529 212 DGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYVV 268 (461)
Q Consensus 212 ~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i~ 268 (461)
.....=-|+|+||+|||+|.. +.+|+|||+|+|.-.... ++.+++..++.++++++
T Consensus 97 ~~~~~p~kif~iG~VyR~D~~-D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lf 154 (247)
T PF01409_consen 97 KHRPPPIKIFEIGKVYRRDEI-DATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELF 154 (247)
T ss_dssp TTSHSSEEEEEEEEEESSSCS-BSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHH
T ss_pred HhcCCCeEEEecCceEecCCc-ccccCccceeEeeEEEecccchhHHHHHHHHHHHHHh
Confidence 000012479999999999988 589999999999876655 57777777666666553
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B .... |
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-12 Score=120.07 Aligned_cols=101 Identities=22% Similarity=0.239 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhhCCcEEEecceeecCCC-CCCC---c-ceeeeecCCCcccccCCccccCCCcccc--CcCcceeEEE
Q 012529 151 RNALAYATHKFFQENGFIWISSPIITASDC-EGAG---E-QFCVTTLIPSSREAAESPVDAIPKTKDG--LIDWSQVYTF 223 (461)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~---~-~F~v~~~~~~~~~~~~s~~~~l~~~~~~--~~~~~rVfeI 223 (461)
|+.+.+.+|++|.+.||.||.||.++.... +..+ + ...+.........+..+....+...... ...--|+|||
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfei 81 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEI 81 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEE
Confidence 678999999999999999999999987522 2111 1 1111111111112222222111110000 0123489999
Q ss_pred ecccccCCCCCC--CCccccccceeeeccCC
Q 012529 224 GPTFRAENSNTS--RHLAEFWMIEPELAFAD 252 (461)
Q Consensus 224 ~~~FR~E~~~t~--rHl~EFtmlE~e~a~~d 252 (461)
|+|||+|.. +. +|+.||+|+++++...+
T Consensus 82 g~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~ 111 (211)
T cd00768 82 GPAFRNEGG-RRGLRRVREFTQLEGEVFGED 111 (211)
T ss_pred cceeecCCC-ccccccceeEEEcCEEEEcCC
Confidence 999999976 33 78899999999998754
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=121.66 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCC---------CC-CCC---cceeeeecCCCcccccCCccccCCCccccCcCcc
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASD---------CE-GAG---EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~---------~e-g~~---~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~ 218 (461)
+.++..||++|...||.|+.+|.|++.. .. .+. +.|.++...- --.+++|.. +..+.... .=-
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~~~~l--LRThTSp~q-ir~L~~~~-~Pi 186 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYIDDGLL--LRTHTSPVQ-IRTMEKQK-PPI 186 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEcCCce--eeccCcHHH-HHHHHhcC-CCe
Confidence 4788899999999999999999997621 11 111 2333311000 001122210 00000000 012
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYVV 268 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--~d~~dlm~~~e~li~~i~ 268 (461)
|+|++|+|||++.. +.+|.|+|+|+|.=... .++.++...++.++++++
T Consensus 187 rif~~G~VyR~D~~-DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~f 237 (339)
T PRK00488 187 RIIAPGRVYRNDSD-DATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFF 237 (339)
T ss_pred EEEEeeeEEEcCCC-CcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHc
Confidence 79999999999977 58999999999976555 368888877777777665
|
|
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-10 Score=119.78 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=35.9
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQ 265 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--~d~~dlm~~~e~li~ 265 (461)
|+|.||+|||+|.. +.+|+|||+|+|.-... .++.+++.+++++++
T Consensus 344 k~fsigrVfR~d~i-DatH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~~ 391 (492)
T PLN02853 344 RYFSIDRVFRNEAV-DRTHLAEFHQVEGLVCDRGLTLGDLIGVLEDFFS 391 (492)
T ss_pred EEEeccceecCCCC-CcccCccceeEEEEEEeCCCCHHHHHHHHHHHHH
Confidence 79999999999998 58999999999965543 356776665555543
|
|
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.5e-10 Score=114.98 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=30.2
Q ss_pred ceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 218 SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 218 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
-|+|+||+|||+|.. +.+|+|||+|+|..+...+
T Consensus 358 ~k~fsigrVfR~d~~-DatH~~eFhQ~Eg~vi~~~ 391 (494)
T PTZ00326 358 KKYFSIDRVFRNETL-DATHLAEFHQVEGFVIDRN 391 (494)
T ss_pred ceEEecCCEecCCCC-CCCcCceeEEEEEEEEeCC
Confidence 389999999999998 5899999999999887654
|
|
| >COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.1e-09 Score=95.92 Aligned_cols=274 Identities=18% Similarity=0.169 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHhh-----hCCcEEEecceeecCCCC------CCCcceeeee--cCCCcccccCCccccCCCcc--c
Q 012529 148 ARVRNALAYATHKFFQ-----ENGFIWISSPIITASDCE------GAGEQFCVTT--LIPSSREAAESPVDAIPKTK--D 212 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~-----~~gF~EV~TPiL~~~~~e------g~~~~F~v~~--~~~~~~~~~~s~~~~l~~~~--~ 212 (461)
+..+.+-|+.+.++|. +.|.+||..|+|+....+ |..++..|.. ......+...|...| ++.. .
T Consensus 5 fI~qQ~~IsfvKn~Ft~~l~~~L~lieVq~Pils~vg~G~qDnLsg~ekaVsv~vk~~p~a~fEvVhSLAKW-KR~tL~r 83 (330)
T COG2502 5 FILQQQAISFVKNTFTQHLEERLGLIEVQAPILSRVGDGLQDNLSGTEKAVSVKVKKLPDATFEVVHSLAKW-KRHTLAR 83 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCeEEeecceEeccCCcccccccccccceEEEEeecCCchhhhhHHHHHH-HHHHHHh
Confidence 3334455555555553 479999999999985432 2222322221 111111111222222 1100 0
Q ss_pred -cCcCcceeEEEeccccc-CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchh
Q 012529 213 -GLIDWSQVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGI 290 (461)
Q Consensus 213 -~~~~~~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~ 290 (461)
+-..-+-+|.=.++-|. |++-+..|.---.|.|||....+-+.-++.+.+.++.+...+.... +.....+
T Consensus 84 ~~f~~~eGlythM~AlRpDeD~ld~~HSvYVDQWDWEkvi~~g~rNl~yLK~tV~kIY~~ir~te---~av~~~~----- 155 (330)
T COG2502 84 YGFSAGEGLYTHMKALRPDEDRLDPIHSVYVDQWDWEKVIPDGDRNLAYLKSTVEKIYAAIRETE---LAVSAEF----- 155 (330)
T ss_pred cCCcCCCceeeechhcCCCcccccchheEEecccchhhhcCCccccHHHHHHHHHHHHHHHHHHH---HHHHHhc-----
Confidence 10112458999999994 7766789988888999998877766667777777777776665331 1000000
Q ss_pred hhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCC-hHhhhchhhhcccCCCeeeeeCCccCC---ccccccC
Q 012529 291 IDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQN 366 (461)
Q Consensus 291 ~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~-~~~e~~l~e~~~~~~p~~i~~~P~~~~---pf~~~~~ 366 (461)
.+..++. ..|||-.+-++.... + +|+ ...|..++..+ ..||++..--.++ |---+.+
T Consensus 156 --~~~~~LP---~~ItFihseeL~~ry----P-------~L~~k~RE~ai~Ke~---gAvFligIGg~LsdG~~hd~RaP 216 (330)
T COG2502 156 --GLAPFLP---DQITFIHSQELVARY----P-------DLDPKGRERAIAKEL---GAVFLIGIGGKLSDGKPHDVRAP 216 (330)
T ss_pred --CCcccCc---cceEEeehHHHHHhC----C-------CCCcchhhHHHHHhh---CcEEEEecccccCCCCcCCCCCC
Confidence 0111111 234554443443321 1 122 23455555544 3566655322211 1111111
Q ss_pred CCccce---------ecccccc------CCceeeechhhhcccHHHHHHHHHHcCCC-cccHHHHHHHhccCCCCCcccc
Q 012529 367 DDGRTV---------AAMDMLV------PRIGELIGGSQREERLEYLEGRLDELKLN-RDSYWWYLDLRHYGSVPHAGFG 430 (461)
Q Consensus 367 ~~~~~~---------~~fdl~~------~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~-~~~~~~yl~a~~~G~pP~gG~g 430 (461)
+.+.++ ..=|+++ .++ |+.+.+.|. +.+.+.++++..|.. ...++|.-..+.--+|-+-|-|
T Consensus 217 dYDdWtt~se~~~~gLNGDilvwn~~l~~af-ElSSMGIRV-de~~l~~Ql~ltgdeDrl~~~wHq~llng~lP~TIGGG 294 (330)
T COG2502 217 DYDDWTTPSELGYKGLNGDILVWNPVLGDAF-ELSSMGIRV-DEDALKRQLALTGDEDRLELEWHQMLLNGELPQTIGGG 294 (330)
T ss_pred CccccCCcccccccccCCcEEEechhccchh-eeecceeEe-cHHHHHHHHhccCchhhhcCHHHHHHHcCCCCccccCc
Confidence 111111 1234333 256 999999998 777777777766543 3346777777777789999999
Q ss_pred ccHHHHHHHHcCCCCcccccc
Q 012529 431 LGFERLVQFATGVENIRDAIP 451 (461)
Q Consensus 431 iGidRLvm~l~g~~~Irdv~~ 451 (461)
||-.||+|+|++.+.|-+|..
T Consensus 295 IGQSRl~M~lL~k~HIGeVQ~ 315 (330)
T COG2502 295 IGQSRLCMLLLQKKHIGEVQA 315 (330)
T ss_pred ccHHHHHHHHhcccccceeee
Confidence 999999999999999999865
|
|
| >PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.9e-09 Score=81.17 Aligned_cols=74 Identities=24% Similarity=0.448 Sum_probs=60.8
Q ss_pred EEEEEEEeee-ecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEE
Q 012529 32 IVVAGWVRTL-RAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (461)
Q Consensus 32 v~v~G~v~~~-R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~ 110 (461)
|+|.|||.++ |..+++.|+.|+|++| .+||++..+. .....+. |..|+.|.|+|++...+.+ +++|.+++++
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg--~i~~~~~~~~-~~~~~~~--l~~g~~v~v~G~v~~~~~~--~~~l~~~~i~ 73 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTG--SIQVVFFNEE-YERFREK--LKEGDIVRVRGKVKRYNGG--ELELIVPKIE 73 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETHH-HHHHHHT--S-TTSEEEEEEEEEEETTS--SEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCc--cEEEEEccHH-hhHHhhc--CCCCeEEEEEEEEEEECCc--cEEEEECEEE
Confidence 7899999999 6679999999999996 5999998721 1222455 9999999999999998654 5999999998
Q ss_pred Ee
Q 012529 111 LV 112 (461)
Q Consensus 111 vl 112 (461)
+|
T Consensus 74 ~l 75 (75)
T PF01336_consen 74 IL 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 76
|
The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A .... |
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.1e-08 Score=99.30 Aligned_cols=107 Identities=13% Similarity=0.168 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCC-C-CCCC-----------cceeeeecCCCcccccCCccccCCCccccCcCc-
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASD-C-EGAG-----------EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW- 217 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~-~-eg~~-----------~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~- 217 (461)
..+...+|++|...||.|+.||.+.+.. . +.-. +.|.+. .. ..+.++....+ +..+....
T Consensus 75 ~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~--d~--~vLRtsl~p~l--l~~l~~N~~ 148 (294)
T TIGR00468 75 TRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK--DR--LLLRTHTTAVQ--LRTMEENEK 148 (294)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec--CC--cceecccHHHH--HHHHHhcCC
Confidence 3667788999999999999999998751 1 1100 122221 00 01111110000 00111111
Q ss_pred --ceeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHH
Q 012529 218 --SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQ 265 (461)
Q Consensus 218 --~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~ 265 (461)
-|+||||+|||++.. +.+|+|||+|++.-+... |+.++...++.++.
T Consensus 149 ~pirlFEiGrVfr~d~~-d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~ 199 (294)
T TIGR00468 149 PPIRIFSPGRVFRNDTV-DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLK 199 (294)
T ss_pred CCceEEEecceEEcCCC-CCccCChhhEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 389999999999876 578999999999775432 55565555555543
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. |
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.2e-08 Score=93.31 Aligned_cols=102 Identities=23% Similarity=0.313 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-------CCCCcceeeeecCCCcccccCCccccCC--Cccc--cC--
Q 012529 148 ARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLIPSSREAAESPVDAIP--KTKD--GL-- 214 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-------eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~--~~-- 214 (461)
.+.|..+.+.+++.|.++||.||.||++...+. +...+.|.+...+. ..+...|....+ +..+ ..
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g--~~l~LRpd~T~~iaR~~a~~~~~~ 79 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGG--RDLALRPDLTAPVARAVAENLLSL 79 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCC--CEEEeCCCCcHHHHHHHHhcCccC
Confidence 367889999999999999999999999988532 12234566532211 122222221111 1000 00
Q ss_pred cCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 215 IDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 215 ~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
..--|+|++|+|||+|... ..|.-||+|+++|+-..+
T Consensus 80 ~~p~k~~y~g~vfR~e~~~-~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 80 PLPLKLYYIGPVFRYERPQ-KGRYREFYQVGVEIIGSD 116 (261)
T ss_pred CCCeEEEEEcCEEecCCCC-CCCccceEEeceeeeCCC
Confidence 0124899999999999873 567899999999986553
|
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. |
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.4e-08 Score=103.16 Aligned_cols=45 Identities=20% Similarity=0.461 Sum_probs=34.0
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYL 264 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li 264 (461)
|+|+||+|||+|.. +..|++||+|+++.+... ++.+++.++++++
T Consensus 352 rlFeiGrVFR~e~~-d~~~l~Ef~ql~~~i~G~~~~f~elkg~l~~ll 398 (489)
T PRK04172 352 KYFSIGRVFRPDTI-DATHLPEFYQLEGIVMGEDVSFRDLLGILKEFY 398 (489)
T ss_pred EEEEecceEcCCCC-CcccCCchheEEEEEEeCCCCHHHHHHHHHHHH
Confidence 79999999999987 468899999999998875 3344444444433
|
|
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-07 Score=94.92 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=29.2
Q ss_pred cceeEEEecccccCCCCCCCCccccccceeeecc
Q 012529 217 WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 250 (461)
Q Consensus 217 ~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~ 250 (461)
-.+++.+|+|||++.. +++|.|+|+|+|.-+.+
T Consensus 147 ~~~~~~~g~VyRrD~i-D~tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 147 HTHFLVTGDVYRRDSI-DATHYPVFHQMEGVRVF 179 (402)
T ss_pred CCcEEEEeeEeecCCC-CcccCccceeEEEEEEe
Confidence 3589999999999998 58999999999987665
|
|
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-07 Score=94.50 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=40.6
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
|+|++|+|||+|...+.+|+++|+|+|.=++.. ++.|++..++.|++.+
T Consensus 209 RIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 209 KLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred EEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 699999999999643579999999999877655 5888888888777654
|
This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys. |
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.49 E-value=7e-07 Score=92.08 Aligned_cols=118 Identities=25% Similarity=0.356 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CCCC----CcceeeeecCCCcccccCCccccCCC--c-cc
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGA----GEQFCVTTLIPSSREAAESPVDAIPK--T-KD 212 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~----~~~F~v~~~~~~~~~~~~s~~~~l~~--~-~~ 212 (461)
+-...+..|...+|+-|.+.||.||.||++-... +|.. -+.|... ++...+++..|....|. . ..
T Consensus 16 ~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~--Dkggr~laLRpe~Tapv~R~~~e 93 (429)
T COG0124 16 EDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFK--DKGGRSLALRPELTAPVARAVAE 93 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEE--eCCCCEEEecccCcHHHHHHHHh
Confidence 3567888999999999999999999999987643 2221 2233222 22234444444322110 0 00
Q ss_pred cCcC---cceeEEEecccccCCCCCCCCccccccceeeeccCCH----HHHHHHHHHHHHH
Q 012529 213 GLID---WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL----KDDMACATAYLQY 266 (461)
Q Consensus 213 ~~~~---~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~----~dlm~~~e~li~~ 266 (461)
.... --|.|.+|||||.|.....|- =||+|+++|....+- -+++.++-+++..
T Consensus 94 n~~~~~~p~k~yy~g~vfRyErPQ~GR~-RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~ 153 (429)
T COG0124 94 NKLDLPKPLKLYYFGPVFRYERPQKGRY-RQFYQFGVEVIGSDSPDADAEVIALAVEILEA 153 (429)
T ss_pred ccccccCCeeEEEecceecCCCCCCCCc-eeeEEcCeEEeCCCCcccCHHHHHHHHHHHHH
Confidence 0001 238999999999999988887 499999999877642 4555555555543
|
|
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-06 Score=82.78 Aligned_cols=111 Identities=14% Similarity=0.217 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhCCcEEEecceeecCCC--CCCC-----------cceeeeecCCCcccccCCccccCCCccccCcCcce
Q 012529 153 ALAYATHKFFQENGFIWISSPIITASDC--EGAG-----------EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (461)
Q Consensus 153 ~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg~~-----------~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~r 219 (461)
.+.+.+|++|...||.||.|+.+++... +.-. +++.+ .++.-..+.+|....+.........--|
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l--~NP~~~~LR~sLlp~LL~~l~~N~~~~~ 82 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYI--NDPARLLLRTHTSAVQARALAKLKPPIR 82 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEE--CCCceEEEeccCcHHHHHHHHhcCCCee
Confidence 5667889999999999999999987621 1110 11111 1110011111211111100010012348
Q ss_pred eEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHH
Q 012529 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 266 (461)
Q Consensus 220 VfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~ 266 (461)
+||||+|||++.. +..|+|||+|+++.+++. |+.+++..+|.++..
T Consensus 83 lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~ 130 (218)
T cd00496 83 IFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKE 130 (218)
T ss_pred EEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999999999876 457899999999999987 899999999988863
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. |
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.6e-07 Score=81.30 Aligned_cols=120 Identities=23% Similarity=0.232 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhh-hCCcEEEecceeecCCC-CC-------CCcceeeeecCCCcccccCCccccC---CC-cccc-Cc
Q 012529 150 VRNALAYATHKFFQ-ENGFIWISSPIITASDC-EG-------AGEQFCVTTLIPSSREAAESPVDAI---PK-TKDG-LI 215 (461)
Q Consensus 150 ~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~~~~-eg-------~~~~F~v~~~~~~~~~~~~s~~~~l---~~-~~~~-~~ 215 (461)
++++|++.+++.+. +.||.||.||+|.+... .+ ....|.+...+.....|....+..+ .+ .... .-
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccc
Confidence 57899999999999 99999999999998432 11 1345665443322222322211111 00 0000 00
Q ss_pred Cc-ceeEEEecccccCCC--CCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHH
Q 012529 216 DW-SQVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 270 (461)
Q Consensus 216 ~~-~rVfeI~~~FR~E~~--~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~ 270 (461)
.+ =++|++|+|||+|.. ++-..+-||+|.|++....+ ++..+..++++..+..-
T Consensus 81 ~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~~~i 137 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELYKEI 137 (173)
T ss_dssp GSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHHHHH
T ss_pred cCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHHHHH
Confidence 11 269999999999932 23556779999999987666 78777777777655443
|
seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B .... |
| >TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-06 Score=89.33 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=40.7
Q ss_pred eccccccCCce--eeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccc
Q 012529 373 AAMDMLVPRIG--ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 448 (461)
Q Consensus 373 ~~fdl~~~G~~--Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Ird 448 (461)
...|+.++| . ||+|+++-. .+.++..|++++.+. | --||||+|||+|++.|.++||.
T Consensus 279 ~evdi~~~g-~WiEi~gcG~v~------p~vl~~~g~~~~~~~--------g----~AfGiGleRlaMl~~gi~DiR~ 337 (460)
T TIGR00469 279 WEIEIWFKD-EWLELCGCGIIR------HDILLRAGVHPSETI--------G----WAFGLGLDRIAMLLFDIPDIRL 337 (460)
T ss_pred eEEEEEECC-eeEEEeeeccCc------HHHHHHcCCCccceE--------E----EEEEecHHHHHHHHcCccHHHH
Confidence 446777777 5 999998754 334556677643211 0 1389999999999999999985
|
Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species. |
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.5e-06 Score=81.45 Aligned_cols=121 Identities=19% Similarity=0.071 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC------CCcceeeeecCCC----cccccCCccccCC----C
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLIPS----SREAAESPVDAIP----K 209 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg------~~~~F~v~~~~~~----~~~~~~s~~~~l~----~ 209 (461)
-.+++.+|++.+++.+.+.||.||.||.|...+. ++ ..+.|.+...+.. ...+....+..+. .
T Consensus 31 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~ 110 (261)
T cd00778 31 GYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSK 110 (261)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHh
Confidence 5678889999999999999999999999987532 11 2356766432211 1111111000000 0
Q ss_pred ccccCcCc-ceeEEEecccccCCCCC--CCCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 210 TKDGLIDW-SQVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 210 ~~~~~~~~-~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
...+...+ -|+|++++|||+|.+.+ --=.-||+|.|.+..+++.++..+..++++...
T Consensus 111 ~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~ 171 (261)
T cd00778 111 WIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLY 171 (261)
T ss_pred hccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHH
Confidence 00000011 25899999999998632 001349999999999999988888888776543
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. |
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-05 Score=76.31 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC-----CCcceeeeecCC--CcccccCCccccCC-----Cc-cc
Q 012529 149 RVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIP--SSREAAESPVDAIP-----KT-KD 212 (461)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~--~~~~~~~s~~~~l~-----~~-~~ 212 (461)
+++..|...+++.|.+.||.||.||.|..... .| ..+.|.++..+. .+..+...|....+ .. ..
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~ 82 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEIL 82 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCc
Confidence 57889999999999999999999999998542 11 123444432210 00111111211100 00 00
Q ss_pred cCcCc-ceeEEEecccccCCCCC--CCCccccccceeeeccCCHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACATAYLQY 266 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~ 266 (461)
....+ -|+|++|+|||+|.+.. ..-.-||+|.|+|.-..+ ++..+...+++..
T Consensus 83 ~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~-~~~~~~~~e~~~~ 138 (235)
T cd00670 83 SYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP-EEAEEERREWLEL 138 (235)
T ss_pred cchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH-HHHHHHHHHHHHH
Confidence 00012 37999999999997731 223469999999985443 3333333444433
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.2e-05 Score=74.72 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C--C-----C-CcceeeeecCCC--cccccCCccc-----cCCCc
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----A-GEQFCVTTLIPS--SREAAESPVD-----AIPKT 210 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~-~~~F~v~~~~~~--~~~~~~s~~~-----~l~~~ 210 (461)
-.+++..|.+.+++-+.+.||.||.||.|..... . | . .+.|.++..+.. ...+...|.. .+...
T Consensus 31 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~ 110 (264)
T cd00772 31 AKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAK 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHHh
Confidence 4567889999999999999999999999988432 1 1 1 234555432210 0111111110 00000
Q ss_pred c-ccCcCc-ceeEEEecccccCCCCCCC---CccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 211 K-DGLIDW-SQVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 211 ~-~~~~~~-~rVfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
. .....+ -|+|++++|||+|... .+ =.-||+|.|.+...++.++..+..+.++...
T Consensus 111 ~i~s~~~LPlrl~~~~~~fR~E~r~-~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~ 171 (264)
T cd00772 111 FIKSWKDLPQHLNQIGNKFRDEIRP-RFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAY 171 (264)
T ss_pred hhhhhhccCeeEEEEeCeEeCcCCC-CCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHH
Confidence 0 000012 2799999999999532 11 1249999999986688888877777776543
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.3e-05 Score=81.21 Aligned_cols=105 Identities=20% Similarity=0.270 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC------CC----CCcceeeeecCCCcccccCCccccCCC--cc-
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPK--TK- 211 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg----~~~~F~v~~~~~~~~~~~~s~~~~l~~--~~- 211 (461)
..-.+++..+...+++.|.++||.||.||++...+. +. ..+.|.+...+ ...+...|...++. ..
T Consensus 11 p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~--g~~l~LRpD~T~~iaR~~~ 88 (397)
T TIGR00442 11 PEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKG--GRSLTLRPEGTAPVARAVI 88 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCC--CCEEeecCCCcHHHHHHHH
Confidence 346778899999999999999999999999966321 11 12455543221 11222222111110 00
Q ss_pred cc--CcC-cceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 212 DG--LID-WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 212 ~~--~~~-~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
.. ... --|+|++|+|||.|.+.. -|.-||+|+++|....+
T Consensus 89 ~~~~~~~~p~r~~y~g~vfR~e~~~~-gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 89 ENKLLLPKPFKLYYIGPMFRYERPQK-GRYRQFHQFGVEVIGSD 131 (397)
T ss_pred hcccccCCCeEEEEEcCeecCCCCCC-CcccceEEcCeeeeCCC
Confidence 00 001 148999999999998754 45589999999986654
|
This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. |
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.2e-05 Score=74.39 Aligned_cols=119 Identities=14% Similarity=0.062 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC----C----CCCcceeeeecCCCcccccCCc---cccCCC-ccccC
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC----E----GAGEQFCVTTLIPSSREAAESP---VDAIPK-TKDGL 214 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----e----g~~~~F~v~~~~~~~~~~~~s~---~~~l~~-~~~~~ 214 (461)
-.+++..|.+.+++.|.+.||.||.||+|..... + -..+.|.++..+.....+.... ...+.. .....
T Consensus 30 g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~~~~l~LrPt~e~~~t~~~~~~i~s~ 109 (255)
T cd00779 30 GLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGKEFLLGPTHEEVITDLVANEIKSY 109 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCCCCeEEEecCCcHHHHHHHHhccccH
Confidence 5677889999999999999999999999987321 1 1235666643221111111110 000000 00000
Q ss_pred cCc-ceeEEEecccccC-CCCCC--CCccccccceeeeccCCHHHHHHHHHHHHHH
Q 012529 215 IDW-SQVYTFGPTFRAE-NSNTS--RHLAEFWMIEPELAFADLKDDMACATAYLQY 266 (461)
Q Consensus 215 ~~~-~rVfeI~~~FR~E-~~~t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~ 266 (461)
..+ -|+|++++|||+| ..... | .-||+|.|++....+..+..+..++++..
T Consensus 110 ~~LPlr~~~~~~~FR~E~~~~~Gl~R-~reF~q~e~~~~~~~~~~a~~~~~~i~~~ 164 (255)
T cd00779 110 KQLPLNLYQIQTKFRDEIRPRFGLMR-GREFLMKDAYSFDIDEESLEETYEKMYQA 164 (255)
T ss_pred hhCCHHHHhCcceecCCCCCCCceee-eeeEeHhhheeccCCHHHHHHHHHHHHHH
Confidence 012 2799999999999 43221 2 24999999998777766666655565543
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. |
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.7e-05 Score=79.70 Aligned_cols=123 Identities=16% Similarity=0.158 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--C------CCCcceeeeecCCCcccccCCcc-----ccCCC-cc
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--E------GAGEQFCVTTLIPSSREAAESPV-----DAIPK-TK 211 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e------g~~~~F~v~~~~~~~~~~~~s~~-----~~l~~-~~ 211 (461)
.-.+++.+|.+.+|+.|.+.||.||.||.|.+..- + -+.+.|.+..... ..+...|. ..+.. ..
T Consensus 45 ~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr~~--~~l~LrPT~Ee~~t~~~~~~i 122 (568)
T TIGR00409 45 LGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRKG--REFVLGPTHEEVITDLARNEI 122 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecCCC--CEEEEcCCCcHHHHHHHHHHH
Confidence 35778899999999999999999999999998321 1 1236777643221 11222220 00000 00
Q ss_pred ccCcCc-ceeEEEecccccC-CCCCC--CCccccccceeeeccCCHHHHHHHHHHHH---HHHHHHH
Q 012529 212 DGLIDW-SQVYTFGPTFRAE-NSNTS--RHLAEFWMIEPELAFADLKDDMACATAYL---QYVVRYI 271 (461)
Q Consensus 212 ~~~~~~-~rVfeI~~~FR~E-~~~t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li---~~i~~~~ 271 (461)
.+.-.+ -|+|+|++|||+| ..+.. | .-||+|.|.|.-..+.++.....+.++ ..+++.+
T Consensus 123 ~syr~LPlrlyqi~~~fR~E~rpr~Gl~R-~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 123 KSYKQLPLNLYQIQTKFRDEIRPRFGLMR-GREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred hhccccCeEEEEeeCEeeCCCCCCCCccc-cccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh
Confidence 000012 2799999999999 43322 2 249999999997777666655566554 5555554
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. |
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00012 Score=79.16 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--------CCCCcceeeeecCCCcccccCCcc---ccCCCcc-c
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--------EGAGEQFCVTTLIPSSREAAESPV---DAIPKTK-D 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--------eg~~~~F~v~~~~~~~~~~~~s~~---~~l~~~~-~ 212 (461)
-.-++++..|.+.+|+.|.+.||.||.||+|....- +-+.+.|.++........|....+ ..+.... .
T Consensus 44 P~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~l~LrPt~e~~~~~~~~~~~~ 123 (565)
T PRK09194 44 PLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRHGRDFVLGPTHEEVITDLVRNEIK 123 (565)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecCCCCEEEECCCChHHHHHHHHhhhh
Confidence 335778999999999999999999999999996321 112356766432221111211000 0010000 0
Q ss_pred cCcCc-ceeEEEecccccC-CCCCC--CCccccccceeeeccCCHHHHHHHHHHHH---HHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAE-NSNTS--RHLAEFWMIEPELAFADLKDDMACATAYL---QYVVRYI 271 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E-~~~t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li---~~i~~~~ 271 (461)
....+ -|+|+|++|||+| ..+.. | .-||+|.|.|....+-++.....++++ ..+++.+
T Consensus 124 s~~~LP~r~yqi~~~fR~E~rp~~Gl~R-~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 124 SYKQLPLNLYQIQTKFRDEIRPRFGLMR-GREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRL 188 (565)
T ss_pred hcccCCeEEEEeeCCccCCCCCCCcccc-cccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 00011 3799999999999 33221 2 249999999987666555554444444 5555544
|
|
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.6e-05 Score=77.64 Aligned_cols=105 Identities=19% Similarity=0.264 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CCC----CCcceeeeecCCCcccccCCccccCCC--ccc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEG----AGEQFCVTTLIPSSREAAESPVDAIPK--TKD 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg----~~~~F~v~~~~~~~~~~~~s~~~~l~~--~~~ 212 (461)
..-.+.+..+...+++.|.++||.||.||++...+ ++. ..+.|.+... ....+...|...++. ...
T Consensus 15 p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~--~g~~l~LRpd~T~~~ar~~~ 92 (412)
T PRK00037 15 PEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDK--GGRSLTLRPEGTAPVVRAVI 92 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcC--CCCEEEecCCCcHHHHHHHH
Confidence 44677788999999999999999999999996532 111 2345554321 112222222211110 000
Q ss_pred c-CcCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 213 G-LIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 213 ~-~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
. ...--|+|++|+|||+|.+. ..|.-||+|+++|.-..+
T Consensus 93 ~~~~~p~r~~~~g~vfR~e~~~-~gr~ref~Q~g~ei~g~~ 132 (412)
T PRK00037 93 EHKLQPFKLYYIGPMFRYERPQ-KGRYRQFHQFGVEVIGSD 132 (412)
T ss_pred hCCCCCeEEEEEcCccccCCCC-CCcccceEEcCeeeeCCC
Confidence 0 00124899999999999875 456689999999975543
|
|
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.76 E-value=2e-05 Score=76.64 Aligned_cols=100 Identities=27% Similarity=0.288 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHhhhCC--cEEEecceeecCCCCCCCcceeeeecCC---CcccccCCcccc------CCCcc-cc-
Q 012529 147 VARVRNALAYATHKFFQENG--FIWISSPIITASDCEGAGEQFCVTTLIP---SSREAAESPVDA------IPKTK-DG- 213 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~g--F~EV~TPiL~~~~~eg~~~~F~v~~~~~---~~~~~~~s~~~~------l~~~~-~~- 213 (461)
-.+++..|+..+|+.|...| |.||.||+|.+. ..|.+.. +. ........|... +.... +.
T Consensus 31 g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~~-g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~ 103 (254)
T cd00774 31 GVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTSI-GPVESGGNLGYLRPETAQGIFVNFKNLLEFNR 103 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheeee-cccCCCCcccccCCcccchHHHHHHHHHHHhC
Confidence 56788999999999999885 999999999986 4565431 00 000111111111 00000 00
Q ss_pred -CcCcceeEEEecccccCCCCC---CCCccccccceeeeccCCHHHH
Q 012529 214 -LIDWSQVYTFGPTFRAENSNT---SRHLAEFWMIEPELAFADLKDD 256 (461)
Q Consensus 214 -~~~~~rVfeI~~~FR~E~~~t---~rHl~EFtmlE~e~a~~d~~dl 256 (461)
..-+ ++||||+|||+|.+.. .| .=||||.|+|. |.+-+++
T Consensus 104 ~~lP~-~~~qig~~fR~E~~~~~gl~R-~ReF~q~d~~~-f~~~~~~ 147 (254)
T cd00774 104 RKLPF-GVAQIGKSFRNEISPRNGLFR-VREFTQAEIEF-FVDPEKS 147 (254)
T ss_pred CCCCc-hhhhhchhhccccCcccceee-eccchhhheee-eECCCCc
Confidence 1112 6999999999997632 12 35999999997 4443333
|
GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly |
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00011 Score=72.36 Aligned_cols=113 Identities=16% Similarity=0.242 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCC---CCCcceeeeecCCCcccccCCccccCC--Cccc--c-CcC
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAGEQFCVTTLIPSSREAAESPVDAIP--KTKD--G-LID 216 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~e---g~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~--~-~~~ 216 (461)
..-.+.+..+.+.+++.|..+||-||.||++.....- ...+.|.+... ....++..|...++ +..+ . ...
T Consensus 16 p~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~--~g~~l~LRpD~T~~iaR~~a~~~~~~~ 93 (281)
T PRK12293 16 GKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDE--KNHQISLRADSTLDVVRIVTKRLGRST 93 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECC--CCCEEEECCcCCHHHHHHHHHhcccCC
Confidence 3456778899999999999999999999999864331 22345654322 12233333322211 0000 0 001
Q ss_pred -cceeEEEecccccCCCCCCCCccccccceeeeccCC-HHHHHHHHHHHHHH
Q 012529 217 -WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQY 266 (461)
Q Consensus 217 -~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d-~~dlm~~~e~li~~ 266 (461)
--|.|.+|+|||.|. .||+|+.+|.-..+ ..+++.++-+.++.
T Consensus 94 ~p~r~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~~ 138 (281)
T PRK12293 94 EHKKWFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFEE 138 (281)
T ss_pred CceeEEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHHH
Confidence 238999999999873 49999999987764 55555555554443
|
|
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00023 Score=70.80 Aligned_cols=117 Identities=19% Similarity=0.201 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC----C----CCCcceeeeecCCCcccccCCccc-----cCCCc-cc
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC----E----GAGEQFCVTTLIPSSREAAESPVD-----AIPKT-KD 212 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----e----g~~~~F~v~~~~~~~~~~~~s~~~-----~l~~~-~~ 212 (461)
-.+++.+|.+.+++.+.++||.||.||+|..... + -..+.|.++.-+ ..+...|.. .+... ..
T Consensus 29 g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~---~~l~LRP~~~~~~~~~~~~~~~ 105 (298)
T cd00771 29 GAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEEED---EEYGLKPMNCPGHCLIFKSKPR 105 (298)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEeccCC---ceEEEcccCCHHHHHHHHhhcc
Confidence 5677889999999999999999999999987432 1 123456553211 111112210 00000 00
Q ss_pred cCcCc-ceeEEEecccccCCCCC----CCCccccccceeeeccCCHHHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENSNT----SRHLAEFWMIEPELAFADLKDDMACATAYLQYVV 268 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~~t----~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~ 268 (461)
....+ -|+|++|+|||+|.+.. .| .-||+|.|++.- +.-++..+.+++++..+.
T Consensus 106 s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R-~reF~q~e~~i~-~~~e~~~~e~~e~l~~~~ 164 (298)
T cd00771 106 SYRDLPLRLAEFGTVHRYEQSGALHGLTR-VRGFTQDDAHIF-CTPDQIKEEIKGVLDLIK 164 (298)
T ss_pred chhhCCeEEEEecCcccCCCCCCCCCccc-cccEEECCEEEE-eCCcchHHHHHHHHHHHH
Confidence 00012 27999999999997631 12 249999999985 433444444444444433
|
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00018 Score=74.32 Aligned_cols=120 Identities=17% Similarity=0.104 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-------CCCCcceeeeecCCCcccccCCccccCC--Cccc---
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLIPSSREAAESPVDAIP--KTKD--- 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-------eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~--- 212 (461)
..-.+.|..+...+++.|.++||.||.||++..... +...+.|.+...+ ....++..|...++ +..+
T Consensus 14 p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~-~g~~l~LRpD~T~~iaR~~a~~~ 92 (391)
T PRK12292 14 PEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQL-SGRTLGLRPDMTAQIARIAATRL 92 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecC-CCCEEEECCCCcHHHHHHHHHhc
Confidence 345678899999999999999999999999974211 1123456543320 12223333322211 1100
Q ss_pred -cCcCcceeEEEecccccCCCCCCCCccccccceeeeccCC-H---HHHHHHHHHHHHH
Q 012529 213 -GLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACATAYLQY 266 (461)
Q Consensus 213 -~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d-~---~dlm~~~e~li~~ 266 (461)
....--|+|++|+|||.|.... -+.-||+|+.+|.-..+ . -+++.++-+.++.
T Consensus 93 ~~~~~p~r~~y~g~vfR~~~~~~-gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~ 150 (391)
T PRK12292 93 ANRPGPLRLCYAGNVFRAQERGL-GRSREFLQSGVELIGDAGLEADAEVILLLLEALKA 150 (391)
T ss_pred cCCCCCeEEEeeceeeecCCCcC-CCccchhccceEEeCCCCchHHHHHHHHHHHHHHH
Confidence 0011248999999999998743 34579999999986653 2 3444444444443
|
|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00023 Score=78.76 Aligned_cols=124 Identities=16% Similarity=0.156 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CC-------CCcceeeeecCCCcccccCCcccc-----CCCc
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EG-------AGEQFCVTTLIPSSREAAESPVDA-----IPKT 210 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg-------~~~~F~v~~~~~~~~~~~~s~~~~-----l~~~ 210 (461)
.-.-.+++..++..+|+.+.++||.||.||.|.+..- ++ ..+.|.++- +.....+ .|... +...
T Consensus 317 lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~-~~~~~~L--rp~~~~~~~~~~~~ 393 (686)
T PLN02908 317 LPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEI-EKQEFGL--KPMNCPGHCLMFAH 393 (686)
T ss_pred echHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEec-CCeeEEE--cCCCcHHHHHHHhc
Confidence 3556789999999999999999999999999998431 11 123455421 1111111 11111 0000
Q ss_pred -cccCcCc-ceeEEEecccccCCCC---CCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHH
Q 012529 211 -KDGLIDW-SQVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 271 (461)
Q Consensus 211 -~~~~~~~-~rVfeI~~~FR~E~~~---t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~ 271 (461)
....-.+ -|+|++|+|||+|.+- +-.=.-||+|.|++. |+..+++.+.+++++..+..-+
T Consensus 394 ~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~~v~ 458 (686)
T PLN02908 394 RVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLDYVY 458 (686)
T ss_pred cccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHHHHH
Confidence 0000001 2799999999999772 111134999999998 8888888888888877665433
|
|
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00019 Score=75.94 Aligned_cols=121 Identities=18% Similarity=0.129 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC------CCcceeeeecCCC--cccccCCc--cccC---C-C
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLIPS--SREAAESP--VDAI---P-K 209 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg------~~~~F~v~~~~~~--~~~~~~s~--~~~l---~-~ 209 (461)
-.+++..|...+++-+.+.||.||.||.|.+..- +| ..+.|.++..+.. ...+...| +..+ . .
T Consensus 37 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~ 116 (472)
T TIGR00408 37 GFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKK 116 (472)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhc
Confidence 4566899999999999999999999999987331 12 3367777654320 01111111 1000 0 0
Q ss_pred ccccCcCc-ceeEEEecccccCCCCCC--CCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 210 TKDGLIDW-SQVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 210 ~~~~~~~~-~rVfeI~~~FR~E~~~t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
...+...+ -|+||+++|||+|.+.+. -=.-||+|.|.+..|++.++..+..++++...
T Consensus 117 ~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y 177 (472)
T TIGR00408 117 WVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIY 177 (472)
T ss_pred cccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHH
Confidence 01110012 269999999999987320 11359999999988999888887777776544
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. |
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00025 Score=70.87 Aligned_cols=118 Identities=22% Similarity=0.298 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CCCCCcceeeeecCCCcccccCCccccCC--Cccc--c-
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIP--KTKD--G- 213 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~--~- 213 (461)
..-.+.+..+.+.+++.|..+||.+|+||++.... ++...+.|.+.. .....+...|-..++ +... .
T Consensus 7 ~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D--~~G~~l~LR~D~T~~iaR~~a~~~~ 84 (311)
T PF13393_consen 7 PEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLD--RSGRVLALRPDLTVPIARYVARNLN 84 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEEC--TTSSEEEE-SSSHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEe--cCCcEeccCCCCcHHHHHHHHHhcC
Confidence 44677889999999999999999999999998642 222335555432 211222222211111 0000 0
Q ss_pred CcCcceeEEEecccccCCCCCCCCccccccceeeeccCC-HH---HHHHHHHHHHH
Q 012529 214 LIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMACATAYLQ 265 (461)
Q Consensus 214 ~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d-~~---dlm~~~e~li~ 265 (461)
.....|+|.+|+|||.+... ..+.-||+|+.+|.-..+ .. +++.++-+++.
T Consensus 85 ~~~~~r~~y~g~vfR~~~~~-~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~ 139 (311)
T PF13393_consen 85 LPRPKRYYYIGPVFRYERPG-KGRPREFYQCGFEIIGSSSLEADAEVIKLADEILD 139 (311)
T ss_dssp SSSSEEEEEEEEEEEEETTT-TTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEcceeeccccC-CCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 12357899999999999764 345579999999987654 33 55555555554
|
... |
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00038 Score=72.85 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC------CCC----CcceeeeecCCCcccccCCccccCCC--c-cc
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGA----GEQFCVTTLIPSSREAAESPVDAIPK--T-KD 212 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg~----~~~F~v~~~~~~~~~~~~s~~~~l~~--~-~~ 212 (461)
.-...|..+...+++.|..+||-||.||++..... +.. .+.|.+...+ ...++..|....+. . .+
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~--g~~l~LRpd~T~~iaR~~~~ 93 (430)
T CHL00201 16 DEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRS--NRDITLRPEGTAGIVRAFIE 93 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCC--CCEEEeCCCCcHHHHHHHHH
Confidence 45667899999999999999999999999987421 111 3456543221 12233333222111 0 00
Q ss_pred --c-CcCc-ceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 213 --G-LIDW-SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 213 --~-~~~~-~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
. .... -|.|++|+|||.|.+...|- -||+|+++|.-..+
T Consensus 94 ~~~~~~~~p~R~~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~~ 136 (430)
T CHL00201 94 NKMDYHSNLQRLWYSGPMFRYERPQSGRQ-RQFHQLGIEFIGSI 136 (430)
T ss_pred ccccccCCCeEEEEEcceecCCCCcCCcc-ceeEEeceEEECCC
Confidence 0 1112 48999999999998766665 49999999986553
|
|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00033 Score=77.09 Aligned_cols=122 Identities=18% Similarity=0.226 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC-----CCcceeeeecCCCcccccCCcccc-----CCCc
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDA-----IPKT 210 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~~~~~~s~~~~-----l~~~ 210 (461)
...-.+++..+.+.+++.|...||.||.||++....- .| ..+.|.+...+ ...+...|... +...
T Consensus 266 lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~--~~~~~LRP~~~~~~~r~~~~ 343 (638)
T PRK00413 266 HPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESD--GEEYALKPMNCPGHVQIYKQ 343 (638)
T ss_pred cccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCC--CcEEEEecCCcHHHHHHHhC
Confidence 4556788999999999999999999999999987431 12 22456543222 12222222111 0000
Q ss_pred -cccCcCc-ceeEEEecccccCCCCC--C--CCccccccceeeeccCCHHHHHHHHHHHHHHHHH
Q 012529 211 -KDGLIDW-SQVYTFGPTFRAENSNT--S--RHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 269 (461)
Q Consensus 211 -~~~~~~~-~rVfeI~~~FR~E~~~t--~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~ 269 (461)
......+ -|+|++|+|||+|.+.. . | .-||||+|+|. |..-+...+.+.+++..+.+
T Consensus 344 ~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R-~reF~q~~~~~-~g~~~~~~~e~~eii~l~~~ 406 (638)
T PRK00413 344 GLRSYRDLPLRLAEFGTVHRYEPSGALHGLMR-VRGFTQDDAHI-FCTPEQIEEEVKKVIDLILD 406 (638)
T ss_pred cCCChhhCCceeeeccCeecCCCCCCCcCcce-eeeeEEeeEEE-EcCHHHHHHHHHHHHHHHHH
Confidence 0000012 28999999999998731 1 2 14999999997 65544444444444444333
|
|
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00034 Score=76.74 Aligned_cols=121 Identities=12% Similarity=0.156 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CCCCCcceeeeecCCCcccccCCccccCC--Ccccc-
Q 012529 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIP--KTKDG- 213 (461)
Q Consensus 143 ~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~~- 213 (461)
....-..+|..+...+++.|..+||.||+||++.... ++...+.|.+.. .....+...|...+| +..+.
T Consensus 336 ~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D--~gGr~LaLRPDlTvPiAR~vA~n 413 (763)
T PLN02972 336 FAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLAD--QGGELCSLRYDLTVPFARYVAMN 413 (763)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEEC--CCCCEEEeCCCChHHHHHHHHhC
Confidence 4556778899999999999999999999999997532 222223454432 222223333322221 11111
Q ss_pred CcCcceeEEEecccccCCCCCCCCccccccceeeeccC-C-H---HHHHHHHHHHHHH
Q 012529 214 LIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D-L---KDDMACATAYLQY 266 (461)
Q Consensus 214 ~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-d-~---~dlm~~~e~li~~ 266 (461)
...--|.|+||+|||.|..... +.-||+|+++|.... + . -|++.++-+.++.
T Consensus 414 ~~~p~KrYyiG~VFR~e~pqkG-R~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~ 470 (763)
T PLN02972 414 GITSFKRYQIAKVYRRDNPSKG-RYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDE 470 (763)
T ss_pred CCCcceEEEeccEEecCCCCCC-CCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHh
Confidence 0012367889999999987444 457999999999764 2 1 3455555555543
|
|
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00039 Score=71.89 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--C--C---CCcceeeeecCCCcccccCCccccCC--Cccc---
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--G---AGEQFCVTTLIPSSREAAESPVDAIP--KTKD--- 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e--g---~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~--- 212 (461)
-.-.+.+..+.+.+++.|..+||-||+||++..... . | ....|.+.... ....++..|...++ +..+
T Consensus 18 p~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~-~g~~l~LRpD~T~~iaR~~a~~~ 96 (392)
T PRK12421 18 PEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQL-SGRLMGVRADITPQVARIDAHLL 96 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCC-CCcEEEECCcCCHHHHHHHHhhc
Confidence 345677889999999999999999999999985331 1 1 12345443211 12223333322211 1000
Q ss_pred cCcCcceeEEEecccccCCCCCCCCccccccceeeeccCC-HH---HHHHHHHHHHHHH
Q 012529 213 GLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMACATAYLQYV 267 (461)
Q Consensus 213 ~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d-~~---dlm~~~e~li~~i 267 (461)
....-.|.|.+|+|||.+.....|. -||+|+.+|.-..+ .. +++.++-+.++.+
T Consensus 97 ~~~~p~R~~Y~g~VfR~~~~~~gr~-rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 97 NREGVARLCYAGSVLHTLPQGLFGS-RTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred CCCCceEEEEeeeEEEcCCCcCCCc-CccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 0011358999999999987654554 69999999986653 32 5666666655544
|
|
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00041 Score=69.03 Aligned_cols=119 Identities=15% Similarity=0.207 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CC-------CCcceeeeecCCCcccccCCcccc---CCCcc-c
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EG-------AGEQFCVTTLIPSSREAAESPVDA---IPKTK-D 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg-------~~~~F~v~~~~~~~~~~~~s~~~~---l~~~~-~ 212 (461)
..-.+++.+|.+.+++.+.+.||.||.||.|....- ++ ..+.|.++. ....+....+.. +.... .
T Consensus 49 p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~~---~~~~L~pt~e~~~~~l~~~~~~ 125 (297)
T cd00770 49 GDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVEG---EDLYLIATAEVPLAALHRDEIL 125 (297)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEecC---CCEEEeecCCHHHHHHHhcccC
Confidence 346788899999999999999999999999998432 21 224555531 112221111100 11000 0
Q ss_pred cCcCc-ceeEEEecccccCCC------CCCCCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~------~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
....+ -|+|++|+|||+|.+ .+---.-||+|.|.+ .|+.-++..+..++++...
T Consensus 126 s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~-~f~~~e~~~~~~~~~l~~~ 186 (297)
T cd00770 126 EEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQF-VFTKPEESWEELEELISNA 186 (297)
T ss_pred CHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEE-EEECchHHHHHHHHHHHHH
Confidence 00011 269999999999965 121124599999997 4665566666666655544
|
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. |
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00051 Score=68.91 Aligned_cols=104 Identities=18% Similarity=0.131 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC------CCCCcceeeeecCCCcccccCCccccCCC--ccc----c
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPK--TKD----G 213 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg~~~~F~v~~~~~~~~~~~~s~~~~l~~--~~~----~ 213 (461)
.-.+++..+...+++.|.++||.||+||++..... +...+.|.+...+ ...+...|....+. ... .
T Consensus 6 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~--g~~l~LRpD~T~~iaR~~~~~~~~ 83 (314)
T TIGR00443 6 EEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSL--GRVLGLRPDMTTPIARAVSTRLRD 83 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCC--CCEEeecCcCcHHHHHHHHHhccc
Confidence 35677899999999999999999999999987322 1223455543221 12222233222110 000 1
Q ss_pred CcCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 214 LIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 214 ~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
...-.|+|++|+|||.|... .-+.-||+|+.+|.-..+
T Consensus 84 ~~~p~r~~y~g~VfR~~~~~-~gr~re~~Q~g~Eiig~~ 121 (314)
T TIGR00443 84 RPLPLRLCYAGNVFRTNESG-AGRSREFTQAGVELIGAG 121 (314)
T ss_pred CCCCeEEEEeceEeecCCCc-CCCcccccccceEEeCCC
Confidence 11135899999999999874 456689999999975543
|
Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit. |
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00036 Score=74.20 Aligned_cols=117 Identities=15% Similarity=0.174 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CC-CCCcceeeeecCCCcccccCCccccCCC--ccc--c
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD------CE-GAGEQFCVTTLIPSSREAAESPVDAIPK--TKD--G 213 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~e-g~~~~F~v~~~~~~~~~~~~s~~~~l~~--~~~--~ 213 (461)
..-.++|..+...+++.|...||-||.||++.... ++ -..+.|.+.. .....++..|...++. ... .
T Consensus 81 p~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D--~~g~~l~LRpD~T~~iaR~~~~~~ 158 (487)
T PLN02530 81 PEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFED--KGGRRVALRPELTPSLARLVLQKG 158 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEEC--CCCCEEecCCCCcHHHHHHHHhcc
Confidence 44677889999999999999999999999998732 11 1224554422 2122333333322211 100 0
Q ss_pred -CcCc-ceeEEEecccccCCCCCCCCccccccceeeeccCC----HHHHHHHHHHHH
Q 012529 214 -LIDW-SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYL 264 (461)
Q Consensus 214 -~~~~-~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d----~~dlm~~~e~li 264 (461)
...+ -|.|++|+|||.|.....| .-||+|+.+|.-..+ --+++.++.+.+
T Consensus 159 ~~~~~P~r~~y~g~vfR~e~~q~gr-~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l 214 (487)
T PLN02530 159 KSLSLPLKWFAIGQCWRYERMTRGR-RREHYQWNMDIIGVPGVEAEAELLAAIVTFF 214 (487)
T ss_pred cccCCCeEEEEEcCEEcCcCCCCCC-ccceEEcCeeEeCCCCcchhHHHHHHHHHHH
Confidence 0012 3899999999999875444 469999999986553 234444444433
|
|
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00049 Score=71.75 Aligned_cols=120 Identities=15% Similarity=0.217 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHhh-hCCcEEEecceeecCCC-CCC-------CcceeeeecCCCcccccCCccc---cCCCcc-
Q 012529 145 GAVARVRNALAYATHKFFQ-ENGFIWISSPIITASDC-EGA-------GEQFCVTTLIPSSREAAESPVD---AIPKTK- 211 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~~~~-eg~-------~~~F~v~~~~~~~~~~~~s~~~---~l~~~~- 211 (461)
..-.++..++++.+++.+. +.||.||.||.|..... ++. .+.|.|+. ...++....+. .+..-.
T Consensus 167 p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~~---~~~~L~pTsE~~l~~l~~~~~ 243 (425)
T PRK05431 167 GDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIED---DDLYLIPTAEVPLTNLHRDEI 243 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEecC---CCEEEEeCCcHHHHHHHhccc
Confidence 3467788999999999988 99999999999998432 222 24555531 11222111000 000000
Q ss_pred ccCcCc-ceeEEEecccccCCCCC--CC----CccccccceeeeccCCHHHHHHHHHHHHHHHH
Q 012529 212 DGLIDW-SQVYTFGPTFRAENSNT--SR----HLAEFWMIEPELAFADLKDDMACATAYLQYVV 268 (461)
Q Consensus 212 ~~~~~~-~rVfeI~~~FR~E~~~t--~r----Hl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~ 268 (461)
.....+ -|+|++++|||+|-.-. .+ =.-||+|.|.+ +|+.-++..+..++++...-
T Consensus 244 ~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~l~~~~ 306 (425)
T PRK05431 244 LDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEELTANAE 306 (425)
T ss_pred CCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHHHHHHH
Confidence 000011 26999999999996411 01 13499999999 58877887777777766543
|
|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00057 Score=74.07 Aligned_cols=119 Identities=19% Similarity=0.190 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--C-C-----CCcceeeeecCCCcccccCCcccc-----CCC-
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E-G-----AGEQFCVTTLIPSSREAAESPVDA-----IPK- 209 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e-g-----~~~~F~v~~~~~~~~~~~~s~~~~-----l~~- 209 (461)
.-.-.+++..|.+.+|+.+.+.||.||.||++....- . | ..+.|.++..+. ..+...|... +..
T Consensus 196 ~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~~~--~~~~LrP~~~~~i~~~~~~ 273 (563)
T TIGR00418 196 LPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTELDN--REFMLKPMNCPGHFLIFKS 273 (563)
T ss_pred eccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccCCC--ceEEEecCCCHHHHHHHhC
Confidence 3456778899999999999999999999999987432 1 2 123454432211 1111122111 000
Q ss_pred ccccCcCc-ceeEEEecccccCCCCCC-----CCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 210 TKDGLIDW-SQVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 210 ~~~~~~~~-~rVfeI~~~FR~E~~~t~-----rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
.......+ -|+|++|+|||+|.+ +. |- -||+|.|+|.- ...++.....++++..+
T Consensus 274 ~~~s~~~lP~rl~~~g~~fR~E~~-g~~~Gl~R~-reF~q~~~~~~-~~~~~~~~e~~~~i~~~ 334 (563)
T TIGR00418 274 SLRSYRDLPLRIAELGYSHRYEQS-GELHGLMRV-RGFTQDDAHIF-CTEDQIKEEFKNQFRLI 334 (563)
T ss_pred cCCChHHCCceeeEeccccCCCCC-cCCcCcccc-cceEEeeeEEE-cCHHHHHHHHHHHHHHH
Confidence 00000012 379999999999955 32 32 49999999974 34455555544444433
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. |
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00055 Score=74.40 Aligned_cols=124 Identities=20% Similarity=0.256 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC-----CCcceeeeecCCCcccccCCcccc-----CCCc
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDA-----IPKT 210 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~~~~~~s~~~~-----l~~~ 210 (461)
...-.+++..+.+.+++.|.+.||.||.||+|....- .| ..+.|.+...+. ..+...|... +...
T Consensus 202 ~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~~--~~~~LRP~~~~~~~~~~~~ 279 (575)
T PRK12305 202 HPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEIDE--EEYYLKPMNCPGHILIYKS 279 (575)
T ss_pred eccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccCC--ceEEEecCCCHHHHHHHhc
Confidence 4556788999999999999999999999999998431 12 124555422111 1122222111 0000
Q ss_pred -cccCcCc-ceeEEEecccccCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHHHHHH
Q 012529 211 -KDGLIDW-SQVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 271 (461)
Q Consensus 211 -~~~~~~~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~ 271 (461)
......+ -|.|++|+|||+|.+. .+| .-||+|.|+|. |++.+...+.+.+++..+.+-+
T Consensus 280 ~~~s~~~lP~r~~~~g~~fR~E~~~-~~~Gl~R~reF~q~~~~i-f~~~~~~~~e~~e~i~l~~~~~ 344 (575)
T PRK12305 280 RLRSYRDLPLRLAEFGTVYRYEKSG-VLHGLTRVRGFTQDDAHI-FCTPDQIEDEILKVLDFVLELL 344 (575)
T ss_pred ccCChhhCCHhhEEecccccCCCCC-CCcCcccccCeEEcceEE-EeCHHHHHHHHHHHHHHHHHHH
Confidence 0000012 2799999999999873 211 24999999995 7776666666666666555444
|
|
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00072 Score=70.97 Aligned_cols=119 Identities=16% Similarity=0.066 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCC----CC----CCCcceeeeecCCCcccccCCcc---ccCCCc-cccC
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASD----CE----GAGEQFCVTTLIPSSREAAESPV---DAIPKT-KDGL 214 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~e----g~~~~F~v~~~~~~~~~~~~s~~---~~l~~~-~~~~ 214 (461)
-.+++..|.+.+|+-+.+.||-||.||.|.+.. ++ -..+.|.+.........+....+ ..+... ..+-
T Consensus 46 g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~sy 125 (439)
T PRK12325 46 GLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRHDREMLYGPTNEEMITDIFRSYVKSY 125 (439)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecCCCCEEEEcCCCcHHHHHHHHHHhhhc
Confidence 577889999999999999999999999999742 11 12356766432221111111000 000000 0000
Q ss_pred cCc-ceeEEEecccccCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 215 IDW-SQVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 215 ~~~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
-++ -|+|||++|||+|.+ + +| .-||+|-|.|....+.+++.+..++++...
T Consensus 126 rdLPlrl~q~~~~fR~E~~-~-~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~ 181 (439)
T PRK12325 126 KDLPLNLYHIQWKFRDEIR-P-RFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAY 181 (439)
T ss_pred hhhchHheEecCEecCCCC-C-CCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHH
Confidence 012 379999999999954 2 22 359999999987678777776655555443
|
|
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00052 Score=71.74 Aligned_cols=119 Identities=19% Similarity=0.219 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC----C-CCC----CcceeeeecCCCcccccCCccccCC--Ccccc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD----C-EGA----GEQFCVTTLIPSSREAAESPVDAIP--KTKDG 213 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~-eg~----~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~~ 213 (461)
..-..++..+...+++.|..+||.||.||+|.... . +++ .+.|.+...+ ...+...|...++ +..+.
T Consensus 15 p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~--g~~l~LRpD~T~~iaR~va~ 92 (423)
T PRK12420 15 PEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQG--KRDLALRYDLTIPFAKVVAM 92 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCC--CceecccccccHHHHHHHHh
Confidence 44567788999999999999999999999998742 1 111 2355543222 2233333322221 11111
Q ss_pred --CcCcc-eeEEEecccccCCCCCCCCccccccceeeeccCC----HHHHHHHHHHHHHH
Q 012529 214 --LIDWS-QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQY 266 (461)
Q Consensus 214 --~~~~~-rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d----~~dlm~~~e~li~~ 266 (461)
..... |.|++|+|||.|.... -+.-||+|+.+|.-..+ --+++.++-+.++.
T Consensus 93 ~~~~~~p~r~~y~g~vfR~~~~~~-gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~ 151 (423)
T PRK12420 93 NPNIRLPFKRYEIGKVFRDGPIKQ-GRFREFIQCDVDIVGVESVMAEAELMSMAFELFRR 151 (423)
T ss_pred CcCCCCCeeEEEEcceECCCCCCC-CccceeEECCeeeECCCCCcccHHHHHHHHHHHHH
Confidence 11122 7899999999998743 45689999999986543 24556655555553
|
|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00047 Score=75.85 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CCC-----CcceeeeecCCCcccccCCccc-----cCCCc-cc
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVD-----AIPKT-KD 212 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~-----~~~F~v~~~~~~~~~~~~s~~~-----~l~~~-~~ 212 (461)
=.+++..|.+.+++.+.+.||.||.||+|....- .|. .+.|.++. + +......|.. .+... ..
T Consensus 273 g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d~-~--~~~~~LrP~~~~~~~~~~~~~~~ 349 (639)
T PRK12444 273 GQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSEV-D--NKSFALKPMNCPGHMLMFKNKLH 349 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCeecC-C--CcEEEEccCCCHHHHHHHhCccc
Confidence 3456777999999999999999999999998532 121 13332211 1 1111111110 01000 00
Q ss_pred cCcCc-ceeEEEecccccCCCCC--C--CCccccccceeeeccCCHHHHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENSNT--S--RHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 269 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~~t--~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~ 269 (461)
....+ -|+|++|+|||.|.+.+ . | .-||+|.|++ .|++-+++.+..++++..+..
T Consensus 350 sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R-~reF~q~d~~-~f~~~~~~~~e~~~~~~~~~~ 409 (639)
T PRK12444 350 SYRELPIRMCEFGQVHRHEFSGALNGLLR-VRTFCQDDAH-LFVTPDQIEDEIKSVMAQIDY 409 (639)
T ss_pred ChhhCCceeEEeccccCCCCCcCCcCcce-eeeeEEccEE-EECCHHHHHHHHHHHHHHHHH
Confidence 00011 37999999999998632 1 2 2499999999 688877777766666655443
|
|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00038 Score=74.57 Aligned_cols=124 Identities=14% Similarity=0.120 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--CCC------CcceeeeecCCCcccccCCcccc-----CCCc
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--EGA------GEQFCVTTLIPSSREAAESPVDA-----IPKT 210 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg~------~~~F~v~~~~~~~~~~~~s~~~~-----l~~~ 210 (461)
.-.-.++|..+...+|+.+.++||.||.||.|....- .++ .+.|.++. +. ......|... ++..
T Consensus 164 lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~~-~~--e~~~LrPm~cp~~~~~~~~ 240 (545)
T PRK14799 164 HPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNM-EG--DEYGVKPMNCPAHILIYKS 240 (545)
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceeec-cC--ceEEeccCCCHHHHHHHhc
Confidence 4557889999999999999999999999999876432 111 12343321 11 1112222111 1100
Q ss_pred -cccCcCc-ceeEEEecccccCCCCCC---CCccccccceeeeccCCHHHHHHHHHHHHHHHHHHH
Q 012529 211 -KDGLIDW-SQVYTFGPTFRAENSNTS---RHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 271 (461)
Q Consensus 211 -~~~~~~~-~rVfeI~~~FR~E~~~t~---rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~ 271 (461)
..+.-.+ =|.|++|+|||.|.+... -=.-||||.|+.. |++.+++.+.+.+++..+..-.
T Consensus 241 ~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~vy 305 (545)
T PRK14799 241 KPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLREEIKMLISKTVEVW 305 (545)
T ss_pred cccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHHHHHHHHHHHHHHHH
Confidence 0110011 279999999999988420 1235999999998 8888887777777776655443
|
|
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00037 Score=73.82 Aligned_cols=119 Identities=18% Similarity=0.085 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC------CCcceeeeecCCC----cccccCCccccC----CC
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLIPS----SREAAESPVDAI----PK 209 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg------~~~~F~v~~~~~~----~~~~~~s~~~~l----~~ 209 (461)
-++++..|...+++.|.+.||.||.||.|.+..- ++ ..+.|.|+..+.. ...+....+..+ ..
T Consensus 43 g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~ 122 (477)
T PRK08661 43 GYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKK 122 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHh
Confidence 5788899999999999999999999999987532 11 3356777543311 011111110000 00
Q ss_pred ccccCcCc-ceeEEEecccccCCCCCC--CCccccccceeeeccCCHHHHHHHHHHHHHH
Q 012529 210 TKDGLIDW-SQVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACATAYLQY 266 (461)
Q Consensus 210 ~~~~~~~~-~rVfeI~~~FR~E~~~t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~ 266 (461)
...+..++ -|+||+++|||+|.+ +. -=.-||+|.|.+.++++.++..+.+++++..
T Consensus 123 ~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~ 181 (477)
T PRK08661 123 WIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEI 181 (477)
T ss_pred hhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHH
Confidence 00010012 269999999999986 43 1245999999999999988887777777653
|
|
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00047 Score=71.72 Aligned_cols=119 Identities=14% Similarity=0.234 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CCC-------CcceeeeecCCCcccccCC---ccccCCCcc-c
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGA-------GEQFCVTTLIPSSREAAES---PVDAIPKTK-D 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-------~~~F~v~~~~~~~~~~~~s---~~~~l~~~~-~ 212 (461)
..-.++..++++.+++.+.+.||.||.||.|.+... ++. .+.|.++. ...++... +...+.... .
T Consensus 170 p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~~---~~~~L~pTsE~~~~~~~~~~i~ 246 (418)
T TIGR00414 170 NDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLED---TDLYLIPTAEVPLTNLHRNEIL 246 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEecC---CCEEEEeCCcHHHHHHHhCcCC
Confidence 456888999999999999999999999999998543 222 24455431 11122111 000000000 0
Q ss_pred cCcCc-ceeEEEecccccCCCC------CCCCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~~------t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
....+ -|+|++++|||+|-+- +--=.-||+|.|. ..|++-++..+..++++...
T Consensus 247 s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~~e~s~~~~~~~~~~~ 307 (418)
T TIGR00414 247 EEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCKPEESAEELEEMTSDA 307 (418)
T ss_pred ChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeE-EEEcCHHHHHHHHHHHHHHH
Confidence 00011 2699999999999531 1001349999999 45888788777777766654
|
This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. |
| >PLN02678 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0011 Score=69.34 Aligned_cols=120 Identities=16% Similarity=0.175 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CCCC-------cceeeeecCCCccccc-CC--ccccCCCccc-c
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAA-ES--PVDAIPKTKD-G 213 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~-------~~F~v~~~~~~~~~~~-~s--~~~~l~~~~~-~ 213 (461)
...+++.++++.+++++.++||.||.||.|..... ++.+ +.|.+..-+. +.++. ++ +.-.+..... .
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~-~~yLi~TaE~~l~~~h~~~~~s 250 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGD-DKYLIATSEQPLCAYHRGDWID 250 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCCC-ceeeecccccccChHHhcccCC
Confidence 36888999999999999999999999999987443 2322 3444421000 11111 11 0000000000 0
Q ss_pred CcCc-ceeEEEecccccCCCCCC--C----CccccccceeeeccCCHHH--HHHHHHHHHHHH
Q 012529 214 LIDW-SQVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFADLKD--DMACATAYLQYV 267 (461)
Q Consensus 214 ~~~~-~rVfeI~~~FR~E~~~t~--r----Hl~EFtmlE~e~a~~d~~d--lm~~~e~li~~i 267 (461)
...+ -|++++++|||+|-+... + =.-+|+++|.. +|+.-++ ..+..|+++...
T Consensus 251 ~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f-~~~~pe~~~s~~~~e~~l~~~ 312 (448)
T PLN02678 251 PKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNESWEMHEEMLKNS 312 (448)
T ss_pred HHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEE-EEECCCchhHHHHHHHHHHHH
Confidence 0001 269999999999975111 1 12389999994 4554444 566666666543
|
|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0013 Score=71.76 Aligned_cols=125 Identities=15% Similarity=0.121 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CCC-------CcceeeeecCCCcccccCCccc---cCCCc-c
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGA-------GEQFCVTTLIPSSREAAESPVD---AIPKT-K 211 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-------~~~F~v~~~~~~~~~~~~s~~~---~l~~~-~ 211 (461)
...-.+++.++++.+++...++||.||.||.|....- .+. .+.|.+........-+....+. .++.. .
T Consensus 243 ~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~ 322 (614)
T PLN02837 243 HPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKL 322 (614)
T ss_pred echHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCcc
Confidence 4557889999999999999999999999999998542 221 2344431111100111111000 00000 0
Q ss_pred ccCcCc-ceeEEEecccccCCCCCCC----CccccccceeeeccCCHHHHHHHHHHHHHHHHHH
Q 012529 212 DGLIDW-SQVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 270 (461)
Q Consensus 212 ~~~~~~-~rVfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~ 270 (461)
...-++ -|++|+++|||+|.+ +.+ =.-||+|.|.+. |+..++..+..++++..+-.-
T Consensus 323 ~SyrdLPlr~~~~~~~~R~E~~-g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~~ 384 (614)
T PLN02837 323 HSYRDLPIRVAELGTVYRYELS-GSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEEI 384 (614)
T ss_pred CChhHCCHhhEeecccccCCCC-CCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHHH
Confidence 000011 269999999999976 222 134999999996 998888888888877755443
|
|
| >KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0005 Score=67.90 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=41.4
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
|+|.|-+|||||-. +.+||+||.|+|--.+.. ++-++|.++++++..+
T Consensus 335 K~FSIDrVFRNEtv-DaTHLAEFHQVEGviad~gltLgdLig~l~~ff~~l 384 (483)
T KOG2784|consen 335 KYFSIDRVFRNETV-DATHLAEFHQVEGVIADKGLTLGDLIGILMEFFTKL 384 (483)
T ss_pred cccchhhhhhcccc-chHHHHHHhhhceeeecCCCcHHHHHHHHHHHHhcc
Confidence 69999999999999 589999999999776654 6899999998887643
|
|
| >cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0059 Score=47.42 Aligned_cols=73 Identities=15% Similarity=0.326 Sum_probs=54.2
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEE
Q 012529 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (461)
Q Consensus 32 v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~v 111 (461)
|.|.|-|.+.+..++=.|+.|+|+.+ .|.|++-+... ...... +..||-|.|.|.+.- +++ .+.|.++++++
T Consensus 1 v~v~GeVs~~~~~~GHvyfsLkD~~a--~i~cv~f~~~~-~~~~~~--l~~Gd~V~v~G~v~~-~~G--~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQTSGPTIFTLRDETG--TVWAAAFEEAG-VRAYPE--VEVGDIVRVTGEVEP-RDG--QLQIEVESLEV 72 (73)
T ss_pred CEEEEEEeccccCCCCEEEEEEcCCE--EEEEEEEchhc-cCCcCC--CCCCCEEEEEEEEec-CCe--EEEEEEeeEEE
Confidence 46788888765466668999999874 59998865432 111224 899999999999875 444 69999999987
Q ss_pred e
Q 012529 112 V 112 (461)
Q Consensus 112 l 112 (461)
|
T Consensus 73 ~ 73 (73)
T cd04487 73 L 73 (73)
T ss_pred C
Confidence 5
|
RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function. |
| >cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=46.15 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=54.6
Q ss_pred EEEEEEEeeeec-CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEE
Q 012529 32 IVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (461)
Q Consensus 32 v~v~G~v~~~R~-~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~ 110 (461)
++|.|-|.++|. .++++|+.|.|.++ .+.+++-++. ++..+ ..|..|+.|.|+|.+...+.+ .++.|.++++.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~--~i~~~~f~~~--~~~~~-~~l~~g~~v~v~g~v~~~~~~-~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDA--SIRCVMWRSN--ARRLG-FPLEEGMEVLVRGKVSFYEPR-GGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCe--EEEEEEEcch--hhhCC-CCCCCCCEEEEEEEEEEECCC-CEEEEEEEEEE
Confidence 678999999886 55699999999985 4999887653 23222 238999999999999865322 25788888764
|
E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis. |
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0027 Score=69.10 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--------CCCCcceeeeecCCCcccccCCcccc---CC-Cccc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--------EGAGEQFCVTTLIPSSREAAESPVDA---IP-KTKD 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--------eg~~~~F~v~~~~~~~~~~~~s~~~~---l~-~~~~ 212 (461)
-.-.+++..+.+.+++.+.+.||.+|.||.+..... .-..+.|.++.-+. ...+....+.. ++ ....
T Consensus 224 P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~~e-~l~Lrp~~c~~~~~~~~~~~~ 302 (613)
T PRK03991 224 PKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSDKK-DLMLRFAACFGQFLMLKDMTI 302 (613)
T ss_pred cHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCCCc-eEEEecCCCHHHHHHHhCCcC
Confidence 456889999999999999999999999999954311 11235565532111 11111000000 00 0000
Q ss_pred cCcCc-ceeEEEec-ccccCCCCCCC----CccccccceeeeccCCHHHHHHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGP-TFRAENSNTSR----HLAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 271 (461)
Q Consensus 213 ~~~~~-~rVfeI~~-~FR~E~~~t~r----Hl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~ 271 (461)
+.-++ -|+||+|+ |||+|.+ +.. =+-||||.|.+.--.+.++.++..++++..+..-+
T Consensus 303 SyrdLPlr~~e~~~~~fR~E~~-g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~ 366 (613)
T PRK03991 303 SYKNLPLKMYELSTYSFRLEQR-GELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETG 366 (613)
T ss_pred chhhCChhhheecchheeCCCC-CCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 00011 26999999 9999976 221 24599999999744458999998888887765544
|
|
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0024 Score=65.50 Aligned_cols=110 Identities=22% Similarity=0.189 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCC------CC-CCcceeeeecCCCcccccCCccccCCC--c-cc-cCcCccee
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDC------EG-AGEQFCVTTLIPSSREAAESPVDAIPK--T-KD-GLIDWSQV 220 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg-~~~~F~v~~~~~~~~~~~~s~~~~l~~--~-~~-~~~~~~rV 220 (461)
..+...+++.|..+||.||.||++..... +. ....|.+...+ ...+...|...++- . .. ....-.|.
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~--G~~l~LRpD~T~piaR~~~~~~~~~p~R~ 85 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDEN--GEELCLRPDFTIPVCRRHIATAGGEPARY 85 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCC--CCEEeeCCCCcHHHHHHHHHcCCCCCeEE
Confidence 37889999999999999999999987431 11 12355543221 22233333222110 0 00 11123589
Q ss_pred EEEecccccCCCCCCCCccccccceeeeccC-C-H---HHHHHHHHHHHHHH
Q 012529 221 YTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D-L---KDDMACATAYLQYV 267 (461)
Q Consensus 221 feI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-d-~---~dlm~~~e~li~~i 267 (461)
|++|+|||.|.. | .-||+|+.+|.-.. + . -|++.++-+.+..+
T Consensus 86 ~Y~g~VfR~~~g---r-~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l 133 (373)
T PRK12295 86 AYLGEVFRQRRD---R-ASEFLQAGIESFGRADPAAADAEVLALALEALAAL 133 (373)
T ss_pred EEEccEEECCCC---C-CCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc
Confidence 999999999822 2 35999999998764 3 2 36677766666543
|
|
| >PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0037 Score=65.88 Aligned_cols=50 Identities=22% Similarity=0.360 Sum_probs=38.3
Q ss_pred eeEEEecccccCCCCCCCCc----cccccceeeeccCCHHHHHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHL----AEFWMIEPELAFADLKDDMACATAYLQYVVRYI 271 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl----~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~ 271 (461)
++.|+|+|||+|-+ + +|- -||||.|.+ .|++.+++.+.+..++..+..-+
T Consensus 188 r~aq~g~~~RnE~s-~-~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~~~l 241 (456)
T PRK04173 188 GIAQIGKSFRNEIT-P-RNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRKNWL 241 (456)
T ss_pred eeeEEchhHhCccC-C-CCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHHHHH
Confidence 49999999999977 4 442 799999997 68888777777666665554443
|
|
| >cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.017 Score=47.04 Aligned_cols=76 Identities=24% Similarity=0.326 Sum_probs=56.2
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcch--hhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEE
Q 012529 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (461)
Q Consensus 32 v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~--~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i 109 (461)
|++.|+|.++...+.-.=+.|.|+||. |-+.+....... ..... +..|++|.|.|++..-+. ...|.+..+
T Consensus 2 v~~vG~V~~~~~~~~~~~~tL~D~TG~--I~~~~W~~~~~~~~~~~~~--~~~g~~v~v~G~v~~~~g---~~ql~i~~i 74 (95)
T cd04478 2 VTLVGVVRNVEEQSTNITYTIDDGTGT--IEVRQWLDDDNDDSSEVEP--IEEGTYVRVFGNLKSFQG---KKSIMAFSI 74 (95)
T ss_pred EEEEEEEEeeeEcccEEEEEEECCCCc--EEEEEeCCCCCcccccccc--cccCCEEEEEEEEcccCC---eeEEEEEEE
Confidence 789999999998765556789999974 998887654321 12334 899999999999976543 366777777
Q ss_pred EEecc
Q 012529 110 VLVGK 114 (461)
Q Consensus 110 ~vl~~ 114 (461)
..+..
T Consensus 75 ~~v~d 79 (95)
T cd04478 75 RPVTD 79 (95)
T ss_pred EEeCC
Confidence 76554
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam |
| >cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.028 Score=45.74 Aligned_cols=70 Identities=20% Similarity=0.367 Sum_probs=50.9
Q ss_pred EEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc-------------------hhhhhhcCCCCCcEEEEEeeEee
Q 012529 34 VAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-------------------YDQVKSGLITTGASIWIQGNVVP 94 (461)
Q Consensus 34 v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~-------------------~~~~~~~~l~~g~~V~v~G~~~~ 94 (461)
|.|+|.+++......-+.|.|+||. |-|++...... .+.... +..|++|.|.|++..
T Consensus 2 ivG~V~sv~~~~~~~~~tLdDgTG~--Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~G~vvrV~G~i~~ 77 (92)
T cd04483 2 ILGTVVSRRERETFYSFGVDDGTGV--VNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKV--LEIGDLLRVRGSIRT 77 (92)
T ss_pred eEEEEEEEEecCCeEEEEEecCCce--EEEEEEcCcCcccccccccccccccccccccccccc--cCCCCEEEEEEEEec
Confidence 6899999998866666789999984 99988754320 012345 999999999999977
Q ss_pred cCCCCccEEEEEeEEE
Q 012529 95 SQGSKQKVELKVNKIV 110 (461)
Q Consensus 95 ~~~~~~~~el~~~~i~ 110 (461)
-... ..|.++.+.
T Consensus 78 frg~---~ql~i~~~~ 90 (92)
T cd04483 78 YRGE---REINASVVY 90 (92)
T ss_pred cCCe---eEEEEEEEE
Confidence 5433 556666554
|
Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization. |
| >PLN02320 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.014 Score=61.56 Aligned_cols=117 Identities=19% Similarity=0.179 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CCCCc--------ceeeeecCCCccccc-CC--ccccCCCccc-c
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGE--------QFCVTTLIPSSREAA-ES--PVDAIPKTKD-G 213 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~~--------~F~v~~~~~~~~~~~-~s--~~~~l~~~~~-~ 213 (461)
..++..++++.++++..++||.||.||.|..... ++.+. +|.+. ..+.++. ++ |...+..... .
T Consensus 232 ~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie---~ed~~Li~TaE~Pl~~~~~~~ils 308 (502)
T PLN02320 232 AVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSID---GSDQCLIGTAEIPVGGIHMDSILL 308 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEEC---CCceEEeecccccccccccccccC
Confidence 4456678899999999999999999999998543 33331 22221 1112221 11 1111100000 0
Q ss_pred CcCc-ceeEEEecccccCCCC-C-------CCCccccccceeeeccCCHHHHHHHHHHHHHHHHH
Q 012529 214 LIDW-SQVYTFGPTFRAENSN-T-------SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 269 (461)
Q Consensus 214 ~~~~-~rVfeI~~~FR~E~~~-t-------~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~ 269 (461)
...+ -|++++++|||.|-+. + +-| +|++.|... |+..++..+..++++..+-.
T Consensus 309 ~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~Rvh--QF~KvE~~i-f~~peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 309 ESALPLKYVAFSHCFRTEAGAAGAATRGLYRVH--QFSKVEMFV-ICRPEESESFHEELIQIEED 370 (502)
T ss_pred HhhCCceeEEeccccccccccCCCcCCCceeee--eeecccEEE-EECHHHHHHHHHHHHHHHHH
Confidence 0011 2699999999999551 1 234 899999875 77778888888888776544
|
|
| >COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0026 Score=66.25 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhh--CCcEEEecceeec
Q 012529 148 ARVRNALAYATHKFFQE--NGFIWISSPIITA 177 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~~--~gF~EV~TPiL~~ 177 (461)
..++..|+++.|++|-. .+++||+||+|.+
T Consensus 40 ~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p 71 (558)
T COG0423 40 VELKNNIKEAWRKSFVTEREDVVEIDTPIILP 71 (558)
T ss_pred HHHHHHHHHHHHHHHeeccCCeEEecccccCc
Confidence 34677999999999954 6899999999998
|
|
| >cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.042 Score=44.61 Aligned_cols=74 Identities=19% Similarity=0.410 Sum_probs=54.5
Q ss_pred EEEEEEeeeec--CCCeEEEEEEcCccCccEEEEEeCCCcchhh-hhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEE
Q 012529 33 VVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (461)
Q Consensus 33 ~v~G~v~~~R~--~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i 109 (461)
.|.|.|.+++. .++-.|+.|.|.++ .|.|++-+..-.+.. ... |..||-|.|.|.+..-. .|.++++
T Consensus 2 ~v~GeVs~~~~~~~sGH~yFtlkD~~~--~i~cv~f~~~g~~~~~~~~--l~~Gd~V~v~G~v~~y~------ql~ve~l 71 (91)
T cd04482 2 RVTGKVVEEPRTIEGGHVFFKISDGTG--EIDCAAYEPTKEFRDVVRL--LIPGDEVTVYGSVRPGT------TLNLEKL 71 (91)
T ss_pred EEEEEEeCCeecCCCCCEEEEEECCCc--EEEEEEECcccccccccCC--CCCCCEEEEEEEEecCC------EEEEEEE
Confidence 68999998865 46678899999874 599877654311212 234 99999999999985543 5899999
Q ss_pred EEeccCC
Q 012529 110 VLVGKSD 116 (461)
Q Consensus 110 ~vl~~~~ 116 (461)
++++-..
T Consensus 72 ~~~glg~ 78 (91)
T cd04482 72 RVIRLAR 78 (91)
T ss_pred EECCCcc
Confidence 9877643
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende |
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.019 Score=56.21 Aligned_cols=106 Identities=10% Similarity=-0.091 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--CCC----CcceeeeecCCCcccccCCccccCC--Ccccc-Cc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--EGA----GEQFCVTTLIPSSREAAESPVDAIP--KTKDG-LI 215 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg~----~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~~-~~ 215 (461)
+..+..+..+.+.+++.|.++||-||+||++-..+. ..+ ...|...+ ......++..|...++ +..+. ..
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~-~~~Gr~laLRpD~T~~iAR~~a~~~~ 82 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFW-QHEHQIYALRNDFTDQLLRYYSMYPT 82 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeee-cCCCCEEEEcCCCCHHHHHHHHhcCC
Confidence 445667788999999999999999999999965432 111 11122111 1112223322322111 11111 01
Q ss_pred CcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHH
Q 012529 216 DWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMAC 259 (461)
Q Consensus 216 ~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~ 259 (461)
...|.|.+|+|||++. +|+|+-+|.-..+.+...+.
T Consensus 83 ~~~Rl~Y~g~VfR~~~--------~~~Q~GvEliG~~~~a~~e~ 118 (272)
T PRK12294 83 AATKVAYAGLIIRNNE--------AAVQVGIENYAPSLANVQQS 118 (272)
T ss_pred CCceEEEeccEeccCC--------CcceeceEEECCCchhHHHH
Confidence 2459999999999873 48999999876444333333
|
|
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.012 Score=62.20 Aligned_cols=115 Identities=22% Similarity=0.157 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--C-----C-CCcceeeeecCCCcccccCCc--c---c-----cCC
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC--E-----G-AGEQFCVTTLIPSSREAAESP--V---D-----AIP 208 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e-----g-~~~~F~v~~~~~~~~~~~~s~--~---~-----~l~ 208 (461)
-++++..|.+.+|+-|++.|..||--|+|+++.- | | +.++|.++..+.. .+...| + . ++.
T Consensus 46 g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg~~--~l~L~PTsEe~it~~~~~~i~ 123 (500)
T COG0442 46 GLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRGDR--PLALRPTSEEVITDMFRKWIR 123 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccCCc--eeeeCCCcHHHHHHHHHHHhh
Confidence 5788899999999999999999999999999321 2 2 3478888766532 222121 0 0 111
Q ss_pred CccccCcCcceeEEEecccccCCCCC--CCCccccccceeeeccCCHHHHHHHHHHHHHH
Q 012529 209 KTKDGLIDWSQVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACATAYLQY 266 (461)
Q Consensus 209 ~~~~~~~~~~rVfeI~~~FR~E~~~t--~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~ 266 (461)
...+.. -++|||..+||+|--.+ ---.-||+|=|.|....|.+++....++++..
T Consensus 124 SYkdLP---l~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~ 180 (500)
T COG0442 124 SYKDLP---LKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDA 180 (500)
T ss_pred hhhhCC---cceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHH
Confidence 111111 26999999999994311 11246999999999999999998888877753
|
|
| >PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.036 Score=53.73 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=55.7
Q ss_pred CCEEEEEEEEeeeecC----CCeEEEEEEcCccCccEEEEEeCCCcc--hhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 29 GLMIVVAGWVRTLRAQ----SSVTFIEVNDGSCLSNMQCVMTSDAEG--YDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~~----~~~~Fi~l~D~s~~~~iQvv~~~~~~~--~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
=+.|.|.|.|.++... .+.+|+.|-|+||...|.|++..+... .-.+.. + .|++|.|+|++. .+..
T Consensus 66 I~~v~i~G~Vv~~~~~~~~~~~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~--~-~G~~V~VkG~vs-----r~~~ 137 (256)
T PF10451_consen 66 IRWVRIVGVVVGIDYKWIENEDRIILTIDDSSGANTIECKCSKSSYLSMGLPIND--L-IGKVVEVKGTVS-----RNER 137 (256)
T ss_dssp E-EEEEEEEEEEEEEEE-BBTCEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT----TT-EEEEEEEEE-----SSSE
T ss_pred cEEEEEEEEEEEEEEEeecccceEEEEEeCCCCceeEEEEEEcccccccCCCccC--C-CCcEEEEEEEEc-----cCcE
Confidence 3579999999999765 788999999999833699998865210 011333 6 999999999998 2368
Q ss_pred EEEEeEEEEecc
Q 012529 103 ELKVNKIVLVGK 114 (461)
Q Consensus 103 el~~~~i~vl~~ 114 (461)
+|.++.+.++..
T Consensus 138 ql~ve~i~~~~~ 149 (256)
T PF10451_consen 138 QLDVERIELVRD 149 (256)
T ss_dssp EEEEEEEEEETS
T ss_pred EEEEEEEEccCC
Confidence 999999987753
|
Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A. |
| >PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.054 Score=44.65 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=59.0
Q ss_pred CCEEEEEEEEeeeec-CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEe
Q 012529 29 GLMIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~-~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~ 107 (461)
-+.|.|.|-|.+.+. .++-+|++|.|+. ..|+|++-+... ..+....+..|+-|.|.|.+.--+.. +.+.|.+.
T Consensus 21 ~~~vwV~GEIs~~~~~~~gh~YftLkD~~--a~i~~~~~~~~~--~~i~~~~l~~G~~V~v~g~~~~y~~~-G~~sl~v~ 95 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSSGHVYFTLKDEE--ASISCVIFRSRA--RRIRGFDLKDGDKVLVRGRVSFYEPR-GSLSLIVE 95 (99)
T ss_pred cCCEEEEEEEeecEECCCceEEEEEEcCC--cEEEEEEEHHHH--hhCCCCCCCCCCEEEEEEEEEEECCC-cEEEEEEE
Confidence 478999999999999 5888999999987 569999976532 11220128999999999999765443 25888888
Q ss_pred EEE
Q 012529 108 KIV 110 (461)
Q Consensus 108 ~i~ 110 (461)
+|+
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 774
|
|
| >PRK14894 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.071 Score=56.00 Aligned_cols=31 Identities=6% Similarity=0.084 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhh--hCCcEEEecceeecC
Q 012529 148 ARVRNALAYATHKFFQ--ENGFIWISSPIITAS 178 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~--~~gF~EV~TPiL~~~ 178 (461)
..+++.|+...|++|- ..+.+||+||+|.+.
T Consensus 40 ~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~ 72 (539)
T PRK14894 40 VELKNNIIADWWRTNVYERDDMEGLDAAILMNR 72 (539)
T ss_pred HHHHHHHHHHHHHHHeeccCCEEEeeccccCCH
Confidence 4567889999999883 567889999998873
|
|
| >cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.18 Score=37.58 Aligned_cols=67 Identities=18% Similarity=0.402 Sum_probs=49.1
Q ss_pred EEEEEeeeecCC---CeEEEEEEcCc-cCccEEEEEeCCCcchhhh-hhcCCCCCcEEEEEeeEeecCCCCccEEEEEeE
Q 012529 34 VAGWVRTLRAQS---SVTFIEVNDGS-CLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (461)
Q Consensus 34 v~G~v~~~R~~~---~~~Fi~l~D~s-~~~~iQvv~~~~~~~~~~~-~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~ 108 (461)
+.|.|.+++... .++++.|.|++ + .+.+++-.+. +... .. +..|+.|.|+|++.... +...+.+.+
T Consensus 2 v~g~v~~~~~~~~~~~~~~~~l~D~~~~--~i~~~~~~~~--~~~~~~~--~~~g~~v~v~g~v~~~~---~~~~l~~~~ 72 (75)
T cd03524 2 IVGIVVAVEEIRTEGKVLIFTLTDGTGG--TIRVTLFGEL--AEELENL--LKEGQVVYIKGKVKKFR---GRLQLIVES 72 (75)
T ss_pred eEEEEEeecccccCCeEEEEEEEcCCCC--EEEEEEEchH--HHHHHhh--ccCCCEEEEEEEEEecC---CeEEEEeee
Confidence 678888887753 78999999999 5 4898887653 2221 24 89999999999997642 246676654
Q ss_pred E
Q 012529 109 I 109 (461)
Q Consensus 109 i 109 (461)
+
T Consensus 73 ~ 73 (75)
T cd03524 73 I 73 (75)
T ss_pred e
Confidence 4
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco |
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.039 Score=58.11 Aligned_cols=79 Identities=15% Similarity=0.292 Sum_probs=57.8
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
+.|++|+|.|-|..++.-++-+-+.|+|++|. +++..-.. .+...--. +..||+|.|+|.|...... +.|.+
T Consensus 211 ~ig~tV~I~GeV~qikqT~GPTVFtltDetg~--i~aAAFe~-aGvRAyP~--IevGdiV~ViG~V~~r~g~---lQiE~ 282 (715)
T COG1107 211 MIGKTVRIEGEVTQIKQTSGPTVFTLTDETGA--IWAAAFEE-AGVRAYPE--IEVGDIVEVIGEVTRRDGR---LQIEI 282 (715)
T ss_pred hcCceEEEEEEEEEEEEcCCCEEEEEecCCCc--eehhhhcc-CCcccCCC--CCCCceEEEEEEEeecCCc---EEEee
Confidence 78999999999999999877788899999976 88744221 11111235 9999999999999876544 44555
Q ss_pred eEEEEec
Q 012529 107 NKIVLVG 113 (461)
Q Consensus 107 ~~i~vl~ 113 (461)
.+++.|.
T Consensus 283 ~~me~L~ 289 (715)
T COG1107 283 EAMEKLT 289 (715)
T ss_pred hhhHHhh
Confidence 5555443
|
|
| >PLN02734 glycyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.03 Score=61.08 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHh-hhCCcEEEecceeecCC
Q 012529 148 ARVRNALAYATHKFF-QENGFIWISSPIITASD 179 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff-~~~gF~EV~TPiL~~~~ 179 (461)
-.+++.|+...|++| .+.+.+||+||+|++..
T Consensus 109 ~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~ 141 (684)
T PLN02734 109 CAVKSNVLAFWRQHFVLEENMLEVECPCVTPEV 141 (684)
T ss_pred HHHHHHHHHHHHHHHhccCCeeEeeccccCCHh
Confidence 456789999999999 56677899999999843
|
|
| >COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.057 Score=55.82 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCC-CCC-------cceeeeecCCCcccccCC---ccccCCCcccc-C
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAG-------EQFCVTTLIPSSREAAES---PVDAIPKTKDG-L 214 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~e-g~~-------~~F~v~~~~~~~~~~~~s---~~~~l~~~~~~-~ 214 (461)
..++--++++.+=++..++||.|+.+|.|...... |.+ +.|.+..- +.+|... |...+..-... .
T Consensus 173 ~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~---~~~LipTaEvpl~~l~~~Eil~~ 249 (429)
T COG0172 173 GARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDP---DLYLIPTAEVPLTNLHRDEILDE 249 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEecCC---CEEEEecchhhhHHhhccccccc
Confidence 44444566666667777899999999999986553 222 33444211 1222211 11111110000 0
Q ss_pred cCc-ceeEEEecccccCCCC------C--CCCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 215 IDW-SQVYTFGPTFRAENSN------T--SRHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 215 ~~~-~rVfeI~~~FR~E~~~------t--~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
..+ -+++-.+||||.|..- + +.| +|..+|.-. |+..++.....|+|+...
T Consensus 250 ~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvH--QF~KVE~v~-~~~Pe~S~~~~E~m~~~a 308 (429)
T COG0172 250 EDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVH--QFDKVELVV-ITKPEESEEELEEMLGNA 308 (429)
T ss_pred ccCCeeeEEEChhhhcccccccccccceeeee--eeeeEEEEE-EeCcchhHHHHHHHHHHH
Confidence 011 3578889999999541 1 235 999999743 566666666666666543
|
|
| >COG3111 Periplasmic protein with OB-fold [Function unknown] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.25 Score=41.76 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=53.2
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
+.+..|++.|-|. |..+.=. ...||+|| .|+|.++.+.- . -.. +++.|-|.+.|.+-+.- ...||.|
T Consensus 55 ~Dda~V~l~GnIv--~qi~~D~-y~FrD~sG--eI~VeIdd~~w--~-g~t--v~P~dkV~I~GevDk~~---~~~eIdV 121 (128)
T COG3111 55 HDDAWVSLEGNIV--RQIGDDR-YVFRDASG--EINVDIDDKVW--N-GQT--VTPKDKVRIQGEVDKDW---NSVEIDV 121 (128)
T ss_pred ccCCeEEEEeeEE--EeeCCce-EEEEcCCc--cEEEEeccccc--C-Ccc--cCcccEEEEEeEEcCCC---ccceeEh
Confidence 5678999999984 4433334 37899997 49999886531 1 124 99999999999997652 2478888
Q ss_pred eEEEEe
Q 012529 107 NKIVLV 112 (461)
Q Consensus 107 ~~i~vl 112 (461)
+.|+.+
T Consensus 122 ~~I~k~ 127 (128)
T COG3111 122 KHIEKL 127 (128)
T ss_pred hheEec
Confidence 888765
|
|
| >TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.045 Score=58.62 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHh-hhCCcEEEecceeecC
Q 012529 147 VARVRNALAYATHKFF-QENGFIWISSPIITAS 178 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff-~~~gF~EV~TPiL~~~ 178 (461)
=..++..|+...|++| .+.+++||+||+|++.
T Consensus 36 G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~ 68 (551)
T TIGR00389 36 GAVLKNNIKNAWRKFFIKNERVLEIDTPIITPE 68 (551)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEeeccccCCH
Confidence 3567789999999999 5788999999999983
|
This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases. |
| >cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.49 Score=37.24 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=47.7
Q ss_pred EEEEEEEeeeecC--CCeEEEEEEcCccCccEEEEEeCCCcchh--hhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEe
Q 012529 32 IVVAGWVRTLRAQ--SSVTFIEVNDGSCLSNMQCVMTSDAEGYD--QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (461)
Q Consensus 32 v~v~G~v~~~R~~--~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~--~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~ 107 (461)
|.++|-|.++|.. |+. |+.|.|.+|. +.|++-++. |+ +.+ ..|..+.+|.|+|++.. . . + .+.++
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G~--~Ev~~F~~~--~~~~~~~-~~l~~d~~v~v~g~v~~-~-~--~-~l~~~ 70 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTGR--ITVLLTKDK--EELFEEA-EDILPDEVIGVSGTVSK-D-G--G-LIFAD 70 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCCE--EEEEEeCch--hhhhhhh-hhccCCCEEEEEEEEec-C-C--C-EEEEE
Confidence 6788999888732 556 9999999974 999887654 33 332 23889999999999954 2 2 2 56655
Q ss_pred EE
Q 012529 108 KI 109 (461)
Q Consensus 108 ~i 109 (461)
+|
T Consensus 71 ~I 72 (79)
T cd04490 71 EI 72 (79)
T ss_pred Ee
Confidence 43
|
PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain. |
| >cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.83 Score=35.43 Aligned_cols=61 Identities=16% Similarity=0.316 Sum_probs=45.3
Q ss_pred CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEecc
Q 012529 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (461)
Q Consensus 45 ~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~ 114 (461)
+.++++.|.|++|. +.+++-.+.. ..... +..|..|.|.|++... . +..++.+.++..+..
T Consensus 18 ~~~~~~~l~D~tg~--i~~~~f~~~~--~~~~~--l~~g~~v~v~G~v~~~-~--~~~~l~~~~i~~l~~ 78 (83)
T cd04492 18 KPYLALTLQDKTGE--IEAKLWDASE--EDEEK--FKPGDIVHVKGRVEEY-R--GRLQLKIQRIRLVTE 78 (83)
T ss_pred CcEEEEEEEcCCCe--EEEEEcCCCh--hhHhh--CCCCCEEEEEEEEEEe-C--CceeEEEEEEEECCc
Confidence 46899999999975 9998875433 12234 9999999999999763 2 257888888876654
|
Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases. |
| >cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.16 Score=39.31 Aligned_cols=71 Identities=20% Similarity=0.368 Sum_probs=48.6
Q ss_pred EEEEEeeeec----C-CCeEEEEEEcCccCccEEEEEeCCCcchhhh-hhcCCCCCcEEEEEeeEeecCCCCccEEEEEe
Q 012529 34 VAGWVRTLRA----Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (461)
Q Consensus 34 v~G~v~~~R~----~-~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~-~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~ 107 (461)
+.|.|.+++. . +.++++.|.|++|. +.+++-.+ .|... .. +..|..|.|.|++.... +..++.+.
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~--~~~~~f~~--~~~~~~~~--l~~g~~v~v~G~v~~~~---~~~~l~~~ 72 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGS--IEVVVFPE--TYEKYRDL--LKEDALLLVEGKVERRD---GGLRLIAE 72 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCe--EEEEECHH--HHHHHHHH--hcCCCEEEEEEEEEecC---CceEEEee
Confidence 4566655432 2 24799999999975 88887643 23222 24 89999999999997643 25788887
Q ss_pred EEEEec
Q 012529 108 KIVLVG 113 (461)
Q Consensus 108 ~i~vl~ 113 (461)
++..+.
T Consensus 73 ~i~~~~ 78 (84)
T cd04485 73 RIEDLE 78 (84)
T ss_pred ccccHH
Confidence 765554
|
The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >PRK07373 DNA polymerase III subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.25 Score=51.88 Aligned_cols=78 Identities=17% Similarity=0.272 Sum_probs=58.8
Q ss_pred CCCEEEEEEEEeeeecC-----CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 28 VGLMIVVAGWVRTLRAQ-----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~-----~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
.++.|+|.|.|.++|.. ..++|+.|.|.+|. +.+++-++. |++.+ ..|..+.+|.|+|++.... +.+
T Consensus 279 ~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~--ie~vvFp~~--y~~~~-~~l~~~~~v~v~G~v~~~~---~~~ 350 (449)
T PRK07373 279 EKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQ--SEAVVFPKS--YERIS-ELLQVDARLIIWGKVDRRD---DQV 350 (449)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecC---CeE
Confidence 47789999999998863 24999999999975 999887643 44433 2389999999999997632 246
Q ss_pred EEEEeEEEEec
Q 012529 103 ELKVNKIVLVG 113 (461)
Q Consensus 103 el~~~~i~vl~ 113 (461)
.+.++++.-+.
T Consensus 351 ~liv~~i~~l~ 361 (449)
T PRK07373 351 QLIVEDAEPIE 361 (449)
T ss_pred EEEEeEeecHh
Confidence 77887775443
|
|
| >PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6 | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.33 Score=45.96 Aligned_cols=121 Identities=11% Similarity=0.083 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhh-----CCcEEEecceeecCCCC------CCCcc--eeeeecCCCcccccCCcccc----CCCccccC
Q 012529 152 NALAYATHKFFQE-----NGFIWISSPIITASDCE------GAGEQ--FCVTTLIPSSREAAESPVDA----IPKTKDGL 214 (461)
Q Consensus 152 s~i~~~iR~ff~~-----~gF~EV~TPiL~~~~~e------g~~~~--F~v~~~~~~~~~~~~s~~~~----l~~~~~~~ 214 (461)
...|..|+++|.. .+.+.|..|+++....| |--+| |.+...+........|...| |+++.-
T Consensus 7 q~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpVsF~~k~~~~~~~EIVhSLAKWKR~aL~~y~f-- 84 (244)
T PF03590_consen 7 QKAIKFIKDTFERELSKALNLTRVSAPLFVEKGSGLNDNLNGVERPVSFDIKDIPDETAEIVHSLAKWKRMALKRYGF-- 84 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST----EE--TTSTT--EEE-S--TTHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHHHhCceEecCCeEEecCCCCcCCCCCeEeeEEEEccCCCCceeeeehhHHHHHHHHHHHcCC--
Confidence 5667777777754 79999999999986543 22233 22221111111222343332 111100
Q ss_pred cCcceeEEEecccc-cCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhc
Q 012529 215 IDWSQVYTFGPTFR-AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDN 274 (461)
Q Consensus 215 ~~~~rVfeI~~~FR-~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~ 274 (461)
..-+-+|+=..+-| .|+.-+..|.--.-|.|||.....-+.-++.+.+.++.|.+.+...
T Consensus 85 ~~geGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~~~Rnl~~Lk~tV~~Iy~aik~t 145 (244)
T PF03590_consen 85 PPGEGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISKEDRNLEFLKETVRKIYKAIKET 145 (244)
T ss_dssp -TT-EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--TT--SHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEeecCceeecchhccCcceEEEecccCHhhhcCcccccHHHHHHHHHHHHHHHHHH
Confidence 01245999999999 8865579999999999999988766667777788888877776543
|
3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A. |
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.14 Score=54.49 Aligned_cols=121 Identities=15% Similarity=0.140 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHH-hhhCCcEEEecceeecCCC-C--C-----CCcceeeeecCC-Cc------cccc-C------
Q 012529 145 GAVARVRNALAYATHKF-FQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIP-SS------REAA-E------ 201 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~f-f~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~-~~------~~~~-~------ 201 (461)
..-.++..++.+.+++. ..+.||.||.||.|.+... + | ..+.|.|+.... .+ .++. +
T Consensus 220 p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~ 299 (517)
T PRK00960 220 PPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIE 299 (517)
T ss_pred ChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhcccccccccc
Confidence 34677788888999877 4667999999999998432 1 1 124455542110 00 0000 0
Q ss_pred -------CccccCC--------Cc-cccCcCc----ceeEE-EecccccCCC--CCCCCccccccceeeeccCCHHHHHH
Q 012529 202 -------SPVDAIP--------KT-KDGLIDW----SQVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMA 258 (461)
Q Consensus 202 -------s~~~~l~--------~~-~~~~~~~----~rVfe-I~~~FR~E~~--~t~rHl~EFtmlE~e~a~~d~~dlm~ 258 (461)
.+.+.|+ .. ....... -|+|+ .|+|||+|.. ++-.=.-||+|.|.- .|++.+++.+
T Consensus 300 ~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~e 378 (517)
T PRK00960 300 KLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEE 378 (517)
T ss_pred ccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHH
Confidence 0001110 00 0000011 15899 5699999942 221123599999998 6889999999
Q ss_pred HHHHHHHH
Q 012529 259 CATAYLQY 266 (461)
Q Consensus 259 ~~e~li~~ 266 (461)
..++++.+
T Consensus 379 e~e~ll~~ 386 (517)
T PRK00960 379 IRDELLKY 386 (517)
T ss_pred HHHHHHHH
Confidence 99988844
|
|
| >PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif) | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.3 Score=40.54 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=50.4
Q ss_pred eeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEee
Q 012529 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (461)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~ 91 (461)
.++++++.. ..++.|++.|.|.+.-..-+ ..++|++| .|+|-++.+. +. -.. +++++-|.+.|.
T Consensus 23 ~TV~~a~~~------~Dd~~V~L~G~Iv~~l~~d~---Y~F~D~TG--~I~VeId~~~--w~-g~~--vt~~~~Vri~Ge 86 (103)
T PF04076_consen 23 TTVAQAKNA------KDDTPVTLEGNIVKQLGDDK---YLFRDATG--EIEVEIDDDV--WR-GQT--VTPDDKVRISGE 86 (103)
T ss_dssp --HHHHTTS-------SSEEEEEEEEEEEEEETTE---EEEEETTE--EEEEE--GGG--ST-T------TTSEEEEEEE
T ss_pred EeHHHHhhC------cCCCeEEEEEEEEEEecCCE---EEEECCCC--cEEEEEChhh--cC-Ccc--cCCCCEEEEEEE
Confidence 455666543 56889999999865443332 47799997 4888887642 11 124 899999999999
Q ss_pred EeecCCCCccEEEEEeEEE
Q 012529 92 VVPSQGSKQKVELKVNKIV 110 (461)
Q Consensus 92 ~~~~~~~~~~~el~~~~i~ 110 (461)
|.+.-. ..||.|..|+
T Consensus 87 VDk~~~---~~~IdV~~I~ 102 (103)
T PF04076_consen 87 VDKDWN---KTEIDVDRIE 102 (103)
T ss_dssp EEEETT---EEEEEEEEEE
T ss_pred EeCCCC---ceEEEEEEEE
Confidence 986542 4788887764
|
Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A. |
| >PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.23 Score=43.58 Aligned_cols=68 Identities=19% Similarity=0.304 Sum_probs=41.0
Q ss_pred CCCCCEEEEEEEEeeeecC-CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeec
Q 012529 26 DRVGLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS 95 (461)
Q Consensus 26 ~~~~~~v~v~G~v~~~R~~-~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~ 95 (461)
...|+.|.|.|.|.++... ++-.++...+..+...++|.++.+......... |+.||-|.|+|++..-
T Consensus 64 kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--l~~G~~Vti~G~~~g~ 132 (144)
T PF12869_consen 64 KYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQEKRASVAK--LKKGQKVTIKGICTGY 132 (144)
T ss_dssp HHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH----TTSEEEEEEE----
T ss_pred hcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchhhhhhHhc--CCCCCEEEEEEEEEee
Confidence 4579999999999999773 555666676655556799998876533323445 9999999999998543
|
; PDB: 3F1Z_I. |
| >TIGR00156 conserved hypothetical protein TIGR00156 | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.55 Score=40.35 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=50.7
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
..+..|++.|.|.+.-..-. ..++|++|. |+|-++.+. +....++++|-|.+.|.|-+.-. ..||.|
T Consensus 55 ~Ddt~V~L~G~Iv~~l~~d~---Y~F~D~TG~--I~VeId~~~-----w~G~~v~p~d~V~I~GeVDk~~~---~~~IdV 121 (126)
T TIGR00156 55 HDGASVTLRGNIISHIGDDR---YVFRDKSGE--INVVIPAAV-----WNGREVQPKDMVNISGSLDKKSA---PAEVDV 121 (126)
T ss_pred CCCCEEEEEEEEEEEeCCce---EEEECCCCC--EEEEECHHH-----cCCCcCCCCCEEEEEEEECCCCC---CeEEEE
Confidence 56889999999966444322 467999974 999887542 12222889999999999975422 367888
Q ss_pred eEEE
Q 012529 107 NKIV 110 (461)
Q Consensus 107 ~~i~ 110 (461)
+.|+
T Consensus 122 ~~I~ 125 (126)
T TIGR00156 122 THIQ 125 (126)
T ss_pred EEEE
Confidence 7765
|
As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. |
| >COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.38 Score=43.88 Aligned_cols=74 Identities=24% Similarity=0.321 Sum_probs=55.0
Q ss_pred CCCCEEEEEEEEeeeec--CCCeEEEEEEcCccCccEEEEEeCCCcchhh----hhhcCCCCCcEEEEEeeEeecCCCCc
Q 012529 27 RVGLMIVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ----VKSGLITTGASIWIQGNVVPSQGSKQ 100 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~--~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~----~~~~~l~~g~~V~v~G~~~~~~~~~~ 100 (461)
...+.|+|.|-|.+.+. .+++.++.|+|++|. |-+++..+...+-. .-- +..|++|.|+|.+..-+..
T Consensus 49 ~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtGt--i~vva~~~tee~l~~n~~~p~--~~eGe~veVtGrv~~yrG~-- 122 (204)
T COG4085 49 RLNEEVTVKGEVTADQNAIGGGIESLVLNDGTGT--ITVVASRSTEETLELNEGMPV--TVEGEIVEVTGRVEEYRGS-- 122 (204)
T ss_pred eeeccceeeeEEEeeecccccceEEEEEECCCCc--EEEEEecChhHhHhhcCCCCc--cccCcEEEEEEEEEEeCCC--
Confidence 46778999999999985 489999999999974 99888776532100 113 5689999999999876654
Q ss_pred cEEEEEe
Q 012529 101 KVELKVN 107 (461)
Q Consensus 101 ~~el~~~ 107 (461)
.|+.+.
T Consensus 123 -~eVkvn 128 (204)
T COG4085 123 -SEVKVN 128 (204)
T ss_pred -ceeecc
Confidence 455553
|
|
| >TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.39 Score=50.78 Aligned_cols=120 Identities=14% Similarity=0.059 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHh-hhCCcEEEecceeecCCC---CC-----CCcceeeeecCC-Cc--------------------
Q 012529 147 VARVRNALAYATHKFF-QENGFIWISSPIITASDC---EG-----AGEQFCVTTLIP-SS-------------------- 196 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff-~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~-~~-------------------- 196 (461)
..++..++.+.+.+.. .+.||.||.+|.|.+... +| ..+.|.|+..+. .+
T Consensus 222 ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L 301 (520)
T TIGR00415 222 ITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKL 301 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhccccccccccccccccc
Confidence 5667778888886655 556999999999998543 12 123444532110 00
Q ss_pred --------ccccCC---ccccCCCc-cccCcCc-ceeEEEe-cccccCCC--CCCCCccccccceeeeccCCHHHHHHHH
Q 012529 197 --------REAAES---PVDAIPKT-KDGLIDW-SQVYTFG-PTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACA 260 (461)
Q Consensus 197 --------~~~~~s---~~~~l~~~-~~~~~~~-~rVfeI~-~~FR~E~~--~t~rHl~EFtmlE~e~a~~d~~dlm~~~ 260 (461)
..+... +.+.+..- .....++ -++|++. +|||.|.. +.-.=.-||+|.|.-. +++.++..+..
T Consensus 302 ~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~~ 380 (520)
T TIGR00415 302 KNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEIR 380 (520)
T ss_pred cccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHHH
Confidence 000000 00000000 0000112 3689955 79999974 2222345999999988 88999998888
Q ss_pred HHHHHHH
Q 012529 261 TAYLQYV 267 (461)
Q Consensus 261 e~li~~i 267 (461)
++++...
T Consensus 381 e~mle~~ 387 (520)
T TIGR00415 381 DKTLELA 387 (520)
T ss_pred HHHHHHH
Confidence 8888644
|
The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. |
| >cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14) | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.86 Score=37.66 Aligned_cols=68 Identities=15% Similarity=0.284 Sum_probs=49.2
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
+.|+.|++-|+|.+.+.. . +.+.+.-| ..++|.++... . +..+-+|.|.|++.. ...|.+
T Consensus 13 f~gk~V~ivGkV~~~~~~---~-~~~~~~Dg-~~v~v~l~~~~-------~--~~~~~~vEViG~V~~------~~~I~~ 72 (101)
T cd04479 13 FVGKTVRIVGKVEKVDGD---S-LTLISSDG-VNVTVELNRPL-------D--LPISGYVEVIGKVSP------DLTIRV 72 (101)
T ss_pred hCCCEEEEEEEEEEecCC---e-EEEEcCCC-CEEEEEeCCCC-------C--cccCCEEEEEEEECC------CCeEEE
Confidence 789999999999998864 2 34443333 35899887642 3 788889999999954 356777
Q ss_pred eEEEEecc
Q 012529 107 NKIVLVGK 114 (461)
Q Consensus 107 ~~i~vl~~ 114 (461)
..+.-++.
T Consensus 73 ~~~~~~g~ 80 (101)
T cd04479 73 LSYIDFGD 80 (101)
T ss_pred EEEEECCC
Confidence 77666655
|
RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer. |
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.2 Score=54.31 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCC--CC----CC-cceeeeecCCCcc---cccCCccccCCCcc----ccCcCc
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDC--EG----AG-EQFCVTTLIPSSR---EAAESPVDAIPKTK----DGLIDW 217 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg----~~-~~F~v~~~~~~~~---~~~~s~~~~l~~~~----~~~~~~ 217 (461)
..+.+.+|++|...||.|+-|..+++..- .. .. ++.. -.++.+. .+.+|....|-... .+...
T Consensus 362 ~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~--l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~- 438 (552)
T PRK09616 362 EKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVE--VLNPISEDYTVVRTSLLPSLLEFLSNNKHREYP- 438 (552)
T ss_pred HHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCeEE--EcCCCccchheEeccchHHHHHHHHhccCCCCC-
Confidence 45677889999999999999999987521 10 00 1121 1222111 11122111110000 01111
Q ss_pred ceeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHH
Q 012529 218 SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 266 (461)
Q Consensus 218 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~ 266 (461)
-|+||||+||+.+.. +..|..|++++-+-++.. |+.++...+|.++..
T Consensus 439 ~~lFEiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 439 QKIFEIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred eeEEEeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 379999999998753 345778999998877763 788888888887753
|
|
| >PRK10053 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.68 Score=40.05 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=50.5
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
..+..|++.|.|.+-=..- - ...+|++|. |+|-++.+. +...-++++|-|.+.|.+-+.-. ..||.|
T Consensus 59 ~Dd~~V~L~G~Iv~~lg~d--~-Y~F~D~tG~--I~VeID~~~-----w~G~~v~p~~kV~I~GevDk~~~---~~~IdV 125 (130)
T PRK10053 59 HDGATVSLRGNLIDHKGDD--R-YVFRDKSGE--INVIIPAAV-----FDGREVQPDQMININGSLDKKSA---PPVVRV 125 (130)
T ss_pred cCCCeEEEEEEEEEEeCCc--e-EEEECCCCc--EEEEeCHHH-----cCCCcCCCCCEEEEEEEECCCCC---CeEEEE
Confidence 5678999999985433222 2 467999974 999887542 22223999999999999976522 478888
Q ss_pred eEEE
Q 012529 107 NKIV 110 (461)
Q Consensus 107 ~~i~ 110 (461)
+.|+
T Consensus 126 ~~i~ 129 (130)
T PRK10053 126 THLQ 129 (130)
T ss_pred EEEe
Confidence 8775
|
|
| >PRK15491 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.66 Score=47.65 Aligned_cols=92 Identities=22% Similarity=0.267 Sum_probs=65.6
Q ss_pred eeeccccCCCcCCCCCCCCEEEEEEEEeee-------ec---CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCC
Q 012529 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL-------RA---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (461)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~-------R~---~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~ 81 (461)
+.|++|.+ ....|+|.|+|.++ |. -|++.=+.|-|.||. |++++..+..+ .+..+.|.
T Consensus 58 ~kI~dL~~--------~~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~--ir~tlW~~~a~--~~~~~~le 125 (374)
T PRK15491 58 TKIADINE--------SSSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGS--IRLTLWDDLAD--LIKTGDIE 125 (374)
T ss_pred ccHHHCCC--------CCCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCe--EEEEEECchhh--hhccCCcC
Confidence 45666654 23679999999987 22 257777899999974 99999876532 12213389
Q ss_pred CCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCC
Q 012529 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (461)
Q Consensus 82 ~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~ 118 (461)
.|+++.|.|.+.+.- +.+||.+.+.+.+.+|+..
T Consensus 126 ~G~v~~I~~~~~~~y---~g~Ei~i~~~~~i~~~~~~ 159 (374)
T PRK15491 126 VGKSLNISGYAKEGY---SGIEVNIGRYGGISESDEN 159 (374)
T ss_pred CCCEEEEeeeeccCc---ccEEEEeCCCceeeecccc
Confidence 999999998754433 2489999988888888654
|
|
| >KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.28 Score=49.00 Aligned_cols=120 Identities=23% Similarity=0.217 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCC-------CC-CCCcceeeeecCCCcccccCCcccc--------CC-C
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASD-------CE-GAGEQFCVTTLIPSSREAAESPVDA--------IP-K 209 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-------~e-g~~~~F~v~~~~~~~~~~~~s~~~~--------l~-~ 209 (461)
-+|.-.++++.++.=|++-|=.+|.-|+|++.. .+ -+.+.|.+-..+.....++...+.. .+ .
T Consensus 51 g~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~gkq~cL~pThEE~iT~lmat~~~ls 130 (457)
T KOG2324|consen 51 GLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRKGKQMCLTPTHEEDITALMATYIPLS 130 (457)
T ss_pred hHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccCCCEeccCCchHHHHHHHHHhcCccc
Confidence 466678999999999999999999999999832 12 2457787644332222222111111 11 0
Q ss_pred ccccCcCcceeEEEecccccCCC-CC--CCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHHH
Q 012529 210 TKDGLIDWSQVYTFGPTFRAENS-NT--SRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYIL 272 (461)
Q Consensus 210 ~~~~~~~~~rVfeI~~~FR~E~~-~t--~rHl~EFtmlE~e~a~~-d~~dlm~~~e~li~~i~~~~~ 272 (461)
..|.. =+|||||+=||+|-- +. -| --||.|=|+|. |. |-++.|+ +-+++..+..++.
T Consensus 131 ykqlP---i~vYQigrKfRDElrpRfGLlR-gREFlMKDmYs-Fd~~~etA~q-Ty~~v~~aY~~iF 191 (457)
T KOG2324|consen 131 YKQLP---IRVYQIGRKFRDELRPRFGLLR-GREFLMKDMYS-FDSDEETAQQ-TYQLVDQAYDRIF 191 (457)
T ss_pred cccCc---EEeeeechhhhhccCccccchh-hHHHHHhhhhc-ccCCHHHHHH-HHHHHHHHHHHHH
Confidence 11211 279999999999932 10 11 24999999996 54 4555543 4444444444443
|
|
| >PRK14699 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.94 Score=48.09 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=61.9
Q ss_pred CCEEEEEEEEeeee-------cC---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCC
Q 012529 29 GLMIVVAGWVRTLR-------AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS 98 (461)
Q Consensus 29 ~~~v~v~G~v~~~R-------~~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~ 98 (461)
++.|++.|+|.++- .+ |++.=+.|-|.||. |.+++..+..+. +..+.|..||+|.|.|.++.-.
T Consensus 67 ~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG~--ir~tlW~~~a~~--~~~g~l~~GDvv~I~~~~r~~~-- 140 (484)
T PRK14699 67 SGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETGK--IKLTLWDNMADL--IKAGKIKAGQTLQISGYAKQGY-- 140 (484)
T ss_pred CceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCCe--EEEEEecCccch--hhhcCCCCCCEEEEcceeccCC--
Confidence 46799999999973 22 56777789999975 999998765321 2322399999999999643322
Q ss_pred CccEEEEEeEEEEeccCCCCCCCC
Q 012529 99 KQKVELKVNKIVLVGKSDPSYPIQ 122 (461)
Q Consensus 99 ~~~~el~~~~i~vl~~~~~~~Pl~ 122 (461)
++.||.+.+.+++.+++..++.+
T Consensus 141 -~g~el~~~~~~~i~~~~~~i~v~ 163 (484)
T PRK14699 141 -SGVEVNIGNNGVLTESEEEIDVA 163 (484)
T ss_pred -CCceEEeCCCceeeccCcccccC
Confidence 34799988777888765545554
|
|
| >COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.91 Score=41.94 Aligned_cols=64 Identities=14% Similarity=0.275 Sum_probs=49.4
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc-hhhhhhcCCCCCcEEEEEeeEeecCCC
Q 012529 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGS 98 (461)
Q Consensus 31 ~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~v~G~~~~~~~~ 98 (461)
.|.+.|||.++..+..-+|+.|-||+|. |-|-..+.... .++.+. +.-|-+|.|.|.++.-.++
T Consensus 68 ~V~fVGvvrni~~~ttn~~~~iEDGTG~--Ievr~W~~~~~~~e~~~d--~~~~~yvkV~G~lk~F~GK 132 (258)
T COG5235 68 NVQFVGVVRNIKTSTTNSMFVIEDGTGS--IEVRFWPGNSYEEEQCKD--LEEQNYVKVNGSLKTFNGK 132 (258)
T ss_pred eEEEEEEEEeeeecccceEEEEecCCce--EEEEecCCCchHHHhccc--cccccEEEEecceeeeCCe
Confidence 4789999999999977788999999985 88877765432 233455 7788899999999765433
|
|
| >PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.79 Score=38.37 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=38.2
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecC
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~ 96 (461)
+.|+.|++-|+|.+....|+.+-+.-.|+. .++|.+.... . +..+.+|.|.|++....
T Consensus 16 ~~gk~VrivGkv~~~~~~g~~~~l~~~d~~---~V~v~l~~~~-------~--~~~~~~vEviG~V~~~~ 73 (109)
T PF08661_consen 16 FVGKTVRIVGKVESVDPDGGSATLSTSDGG---QVTVSLNPPS-------D--EELSKYVEVIGKVNDDG 73 (109)
T ss_dssp GTTSEEEEEEEEEEE-TTSSEEEEE-TTS----EEEEEESS---------S--S---SEEEEEEEE-TTS
T ss_pred hCCCeEEEEEEEeeEcCCCCEEEEEcCCCC---EEEEEeCCCC-------C--CCCCCEEEEEEEEcCCC
Confidence 689999999999999977765544444663 5788776542 2 66789999999996643
|
; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D. |
| >PRK06826 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.7 Score=54.09 Aligned_cols=80 Identities=14% Similarity=0.309 Sum_probs=59.7
Q ss_pred CCCEEEEEEEEeeeecC----C-CeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~----~-~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
.|..|+|.|.|.++|.. | .++|+.|.|.+|. +.+++-++. |+..+ ..|..|.+|.|+|++.....+ .+
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~--~e~~vfp~~--~~~~~-~~l~~~~~~~v~g~v~~~~~~--~~ 1062 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGT--VEVIVFPKV--YEKYR-SLLNEDNIVLIKGRVSLREDE--EP 1062 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCc--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecCCC--ce
Confidence 46789999999998763 2 4999999999975 999887643 44432 238999999999999754322 47
Q ss_pred EEEEeEEEEecc
Q 012529 103 ELKVNKIVLVGK 114 (461)
Q Consensus 103 el~~~~i~vl~~ 114 (461)
.+.++++.-+..
T Consensus 1063 ~~~~~~~~~l~~ 1074 (1151)
T PRK06826 1063 KLICEEIEPLVI 1074 (1151)
T ss_pred EEEEeeeecHhh
Confidence 788887765543
|
|
| >PRK07374 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.68 Score=54.21 Aligned_cols=78 Identities=9% Similarity=0.213 Sum_probs=58.8
Q ss_pred CCCEEEEEEEEeeeecC---C--CeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 28 VGLMIVVAGWVRTLRAQ---S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~---~--~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
.|.+|+|.|.|.++|.. + .++|+.|.|.+|. +.+++-++. |.+.+ ..|..|.+|.|+|++.... +.+
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~--~e~vvFp~~--y~~~~-~~l~~~~~~~v~g~v~~~~---~~~ 1070 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGS--CEAVVFPKS--YERLS-DHLMTDTRLLVWAKVDRRD---DRV 1070 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecC---CeE
Confidence 46789999999998763 2 4999999999975 999887643 44433 2389999999999997642 246
Q ss_pred EEEEeEEEEec
Q 012529 103 ELKVNKIVLVG 113 (461)
Q Consensus 103 el~~~~i~vl~ 113 (461)
.+.++++.-+.
T Consensus 1071 ~~~~~~i~~l~ 1081 (1170)
T PRK07374 1071 QLIIDDCREID 1081 (1170)
T ss_pred EEEEeeeecHh
Confidence 77887776544
|
|
| >PRK05672 dnaE2 error-prone DNA polymerase; Validated | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.71 Score=53.57 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=60.2
Q ss_pred CCCEEEEEEEEeeeecC---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEE
Q 012529 28 VGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el 104 (461)
.|..|+|+|.|..++.. ++++|+.|.|.+|. +.+++-++. |++.+ ..|..|..+.|+|++.... +.+.+
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~--~e~~ifp~~--~~~~~-~~l~~~~~~~v~g~v~~~~---~~~~~ 1023 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGM--VNVVVWPGL--WERQR-REALGARLLLVRGRVQNAE---GVRHL 1023 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCceEEEEEecCCCC--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecC---CeEEE
Confidence 46789999999987763 34999999999975 999887653 44433 2389999999999997642 24778
Q ss_pred EEeEEEEecc
Q 012529 105 KVNKIVLVGK 114 (461)
Q Consensus 105 ~~~~i~vl~~ 114 (461)
.++++.-+..
T Consensus 1024 ~~~~i~~~~~ 1033 (1046)
T PRK05672 1024 VADRLEDLSP 1033 (1046)
T ss_pred EEeeeechHH
Confidence 8888865544
|
|
| >PRK06920 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=89.93 E-value=1.3 Score=51.54 Aligned_cols=79 Identities=15% Similarity=0.265 Sum_probs=59.1
Q ss_pred CCCEEEEEEEEeeeecC-----CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 28 VGLMIVVAGWVRTLRAQ-----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~-----~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
.|+.|+|.|.|.++|.. +.++|+.|.|.+|. +.+++-++. |++.+ ..|..|.+|.|+|++.... +..
T Consensus 942 ~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~--~e~~vFp~~--y~~~~-~~l~~~~~~~v~G~v~~~~---~~~ 1013 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDE--MEAVVFPET--YIHFS-DKLQEGAIVLVDGTIELRN---HKL 1013 (1107)
T ss_pred CCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCc--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecC---CcE
Confidence 46789999999998652 35999999999975 999887643 44432 2389999999999997642 246
Q ss_pred EEEEeEEEEecc
Q 012529 103 ELKVNKIVLVGK 114 (461)
Q Consensus 103 el~~~~i~vl~~ 114 (461)
.+.++++.-+..
T Consensus 1014 ~~~~~~i~~l~~ 1025 (1107)
T PRK06920 1014 QWIVNGLYPLEE 1025 (1107)
T ss_pred EEEEeecccHHH
Confidence 778877755543
|
|
| >PRK05673 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=89.89 E-value=1 Score=52.82 Aligned_cols=80 Identities=18% Similarity=0.346 Sum_probs=60.3
Q ss_pred CCCEEEEEEEEeeeecC-----CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 28 VGLMIVVAGWVRTLRAQ-----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R~~-----~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
.|..|.+.|.|.++|.. +.++|+.|.|.+|. +.+++-++. |++.+. .|..|++|.|+|++.... +.+
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~--iEvviFp~~--ye~~~~-~L~~g~iV~V~GkVe~~~---~~~ 1047 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGR--IEVMLFSEA--LEKYRD-LLEEDRIVVVKGQVSFDD---GGL 1047 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCc--EEEEECHHH--HHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 47789999999998773 24999999999975 999887643 443322 389999999999997632 257
Q ss_pred EEEEeEEEEeccC
Q 012529 103 ELKVNKIVLVGKS 115 (461)
Q Consensus 103 el~~~~i~vl~~~ 115 (461)
.|.++++.-+..+
T Consensus 1048 qlii~~I~~L~~~ 1060 (1135)
T PRK05673 1048 RLTAREVMDLEEA 1060 (1135)
T ss_pred EEEEeecccHHHH
Confidence 7888877665543
|
|
| >KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.17 Score=50.93 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=27.3
Q ss_pred CcceeEEEecccccCCCCCCCCccccccceeeeccC
Q 012529 216 DWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 251 (461)
Q Consensus 216 ~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~ 251 (461)
+.+.--..|-|||-..++ ++|.|=|.++|--..+.
T Consensus 150 ~~~~flv~~DVyrrdeid-sthypvfhq~eg~~~~s 184 (436)
T KOG2783|consen 150 GLDGFLVTGDVYRRDEID-STHYPVFHQMEGVRLWS 184 (436)
T ss_pred cccccceeeeeeeecccc-ccccceeccccceeEEe
Confidence 345566788999988884 89999999999765543
|
|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.65 E-value=0.73 Score=49.89 Aligned_cols=119 Identities=20% Similarity=0.291 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CCCC-----cceeeeecCCCcccccCCccccCCC---ccccCcC
Q 012529 148 ARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLIPSSREAAESPVDAIPK---TKDGLID 216 (461)
Q Consensus 148 l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg~~-----~~F~v~~~~~~~~~~~~s~~~~l~~---~~~~~~~ 216 (461)
..+|+.+.+.+|.-..+.||.||.||.|....- .|.- +.|.+..-+ ......|....-. ..+..-.
T Consensus 220 ~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~---~~~~lKpmNCpgh~~ifk~~~~S 296 (589)
T COG0441 220 ATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDD---REYALKPMNCPGHILIFKSGLRS 296 (589)
T ss_pred ccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCC---hhheeeeccCHhHHHHHhcCCcc
Confidence 468899999999999999999999999987432 1221 223221100 0011111111000 0011001
Q ss_pred c----ceeEEEecccccCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHHHHHH
Q 012529 217 W----SQVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYVVRYI 271 (461)
Q Consensus 217 ~----~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~ 271 (461)
+ -|++|+|.|||.|.| +.-| +=+|||=|.-. |+..+++.+.+.+.+..+..-.
T Consensus 297 YR~LP~r~~E~g~v~R~E~S-Gal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~~v~ 357 (589)
T COG0441 297 YRELPLRLAEFGYVYRYEKS-GALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELILEVY 357 (589)
T ss_pred eeccchhhhhcceeecccCc-chhhccccccceeecccce-eccHHHHHHHHHHHHHHHHHHH
Confidence 1 278999999999988 5555 47899988765 6778888888888777766544
|
|
| >PRK06461 single-stranded DNA-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=89.33 E-value=4.3 Score=35.05 Aligned_cols=83 Identities=22% Similarity=0.197 Sum_probs=55.6
Q ss_pred eeeccccCCCcCCCCCCCCEEEEEEEEeeeec------C---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCC
Q 012529 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (461)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~------~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~ 82 (461)
.+|+||.+. ...|.+.|.|.++.. . +.+.-+.|.|.||. |.+.+..+. +.. |..
T Consensus 5 ~kI~dL~~g--------~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~--I~~tlW~~~-----a~~--l~~ 67 (129)
T PRK06461 5 TKIKDLKPG--------MERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGR--VKLTLWGEQ-----AGS--LKE 67 (129)
T ss_pred eEHHHcCCC--------CCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCE--EEEEEeCCc-----ccc--CCC
Confidence 457777642 256888888885421 1 23666788999974 999887653 224 899
Q ss_pred CcEEEEE-eeEeecCCCCccEEEEEeE---EEEecc
Q 012529 83 GASIWIQ-GNVVPSQGSKQKVELKVNK---IVLVGK 114 (461)
Q Consensus 83 g~~V~v~-G~~~~~~~~~~~~el~~~~---i~vl~~ 114 (461)
||+|.|. |.+..- .+ .++|.+.+ +..+..
T Consensus 68 GdvV~I~na~v~~f-~G--~lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 68 GEVVEIENAWTTLY-RG--KVQLNVGKYGSISESDD 100 (129)
T ss_pred CCEEEEECcEEeee-CC--EEEEEECCCEEEEECCc
Confidence 9999999 555443 22 58888874 555554
|
|
| >KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.20 E-value=0.88 Score=46.68 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceee------cCCCCCCCcceeeeec-CCCcccc-cCCccccCC--CccccC
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIIT------ASDCEGAGEQFCVTTL-IPSSREA-AESPVDAIP--KTKDGL 214 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~------~~~~eg~~~~F~v~~~-~~~~~~~-~~s~~~~l~--~~~~~~ 214 (461)
-+-+.+|..+.+.+.+-|..+|..+|+||++. .-.+|... +-|- ..+...+ +..+.+..| ++.+|.
T Consensus 71 p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdsk----LiYdlkDQGGEl~SLRYDLTVPfARylAmN 146 (518)
T KOG1936|consen 71 PEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSK----LIYDLKDQGGELCSLRYDLTVPFARYLAMN 146 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccc----eeEehhhcCCcEEEeecccccHHHHHHHHc
Confidence 34678899999999999999999999999865 33344331 2221 1111111 111111111 111111
Q ss_pred -cCcceeEEEecccccCCC-CCCCCccccccceeeeccCCHHHHHH
Q 012529 215 -IDWSQVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFADLKDDMA 258 (461)
Q Consensus 215 -~~~~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~~d~~dlm~ 258 (461)
.--=+-|+||++||-+.. -|.=-.=||+|+|+-.|. +++.|+.
T Consensus 147 ki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG-~~d~M~p 191 (518)
T KOG1936|consen 147 KITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAG-QFDPMIP 191 (518)
T ss_pred ccccceeeeEEEEEeccCchhhchhhhhhhccCccccc-cCCCCCc
Confidence 001246999999997753 122233599999999885 3333433
|
|
| >cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.43 Score=44.35 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhCCcEEEecceeecC
Q 012529 153 ALAYATHKFFQENGFIWISSPIITAS 178 (461)
Q Consensus 153 ~i~~~iR~ff~~~gF~EV~TPiL~~~ 178 (461)
.+.+.+|++|...||.||-|..+++.
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~ 29 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSP 29 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCH
Confidence 45677899999999999999999875
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain. |
| >PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria | Back alignment and domain information |
|---|
Probab=87.96 E-value=12 Score=32.33 Aligned_cols=84 Identities=19% Similarity=0.353 Sum_probs=50.7
Q ss_pred eeccccCCCcCCCCCCCCEEEEEEEEe--eeec---CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEE
Q 012529 13 KIVDVKGGPNEGLDRVGLMIVVAGWVR--TLRA---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87 (461)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~v~v~G~v~--~~R~---~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~ 87 (461)
+..++.+.. ...++.|+|.|+|. ++.. ...+.| .|.|+. ..+.|+.+...++ . .+.|..|.
T Consensus 38 t~se~~~~~----~~~~~~vrv~G~V~~gSv~~~~~~~~~~F-~i~D~~--~~i~V~Y~G~~Pd-----~--F~eg~~VV 103 (131)
T PF03100_consen 38 TPSELAAEP----QKVGRKVRVGGLVVEGSVEYDPDGNTLTF-TITDGG--KEIPVVYTGPLPD-----L--FREGQGVV 103 (131)
T ss_dssp -TTTTTTTS----T-TTSEEEEEEEEECTTEEE-TTSSEEEE-EEE-SS---EEEEEEES--CT-----T----TTSEEE
T ss_pred CHHHHhhcc----ccCCceEEEeeEEccCCEEEcCCCCEEEE-EEEECC--cEEEEEECCCCCc-----c--ccCCCeEE
Confidence 345555431 24789999999998 5544 356776 667885 4699999876542 2 67799999
Q ss_pred EEeeEeecCCCCccEEEEEeEEEEeccCCCC
Q 012529 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (461)
Q Consensus 88 v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~ 118 (461)
|+|++.. . -.++++ +||.||+..
T Consensus 104 v~G~~~~--~----g~F~A~--~lL~Kcpsk 126 (131)
T PF03100_consen 104 VEGRLGE--D----GVFEAT--ELLAKCPSK 126 (131)
T ss_dssp EEEEECC--T----SEEEEE--EEEETS---
T ss_pred EEEEECC--C----CEEEEE--EEEeCCCCC
Confidence 9999922 1 134554 578888643
|
Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A. |
| >cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
Probab=87.47 E-value=3.4 Score=34.15 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=49.0
Q ss_pred CEEEEEEEEee---eec------CCCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCCCCcEEEEEe-eEeecCC-
Q 012529 30 LMIVVAGWVRT---LRA------QSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQG-NVVPSQG- 97 (461)
Q Consensus 30 ~~v~v~G~v~~---~R~------~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~~g~~V~v~G-~~~~~~~- 97 (461)
..++|+|||.+ +|. .|++.-++|.|..| +.|++.+-.+.. .|. .. |..|+++.++| .|.+..+
T Consensus 10 ~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~-~~I~~t~~~~~~~~f~--~~--l~eG~vy~i~~~~V~~a~~~ 84 (104)
T cd04474 10 NKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDG-GEIRATFFNDAVDKFY--DL--LEVGKVYYISKGSVKVANKK 84 (104)
T ss_pred CcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCC-CEEEEEEehHHHHHhh--cc--cccccEEEEeccEEeecccc
Confidence 45899999975 332 26788899999954 469999987542 232 23 89999999985 5555422
Q ss_pred ---CCccEEEEEe
Q 012529 98 ---SKQKVELKVN 107 (461)
Q Consensus 98 ---~~~~~el~~~ 107 (461)
....+||...
T Consensus 85 y~~~~~~yeI~f~ 97 (104)
T cd04474 85 FNTLKNDYEITFN 97 (104)
T ss_pred CCCCCCcEEEEEC
Confidence 1245677654
|
RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct |
| >COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.31 E-value=1 Score=46.29 Aligned_cols=102 Identities=21% Similarity=0.176 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---C-C---CCcceeeeecCCCcccccCCccccCCC--cc--ccCc
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---E-G---AGEQFCVTTLIPSSREAAESPVDAIPK--TK--DGLI 215 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---e-g---~~~~F~v~~~~~~~~~~~~s~~~~l~~--~~--~~~~ 215 (461)
-.+.+..|-..+++.|...||-.|+||+|...++ + | -.+.|.+..... ..+...|.+.+|- .. .+..
T Consensus 16 e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g--~~l~LRpD~T~pVaR~~~~~~~~ 93 (390)
T COG3705 16 EARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETG--GRLGLRPDFTIPVARIHATLLAG 93 (390)
T ss_pred HHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCC--CeEEecccccHHHHHHHHHhcCC
Confidence 3455678888899999999999999999998654 2 1 135777643221 2233333333221 00 0111
Q ss_pred CcceeEEEecccccCCCCCCCCccccccceeeeccC
Q 012529 216 DWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 251 (461)
Q Consensus 216 ~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~ 251 (461)
.-.|++..|++||+......+ ..||+|.=+|.=+.
T Consensus 94 ~P~Rl~Y~G~Vfr~~~~~~g~-~~Ef~QaGiEllG~ 128 (390)
T COG3705 94 TPLRLSYAGKVFRAREGRHGR-RAEFLQAGIELLGD 128 (390)
T ss_pred CCceeeecchhhhcchhccCc-ccchhhhhhHHhCC
Confidence 357999999999987332222 35999999887443
|
|
| >COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.19 E-value=0.35 Score=48.59 Aligned_cols=39 Identities=33% Similarity=0.684 Sum_probs=31.9
Q ss_pred HHHHhccCCC-CCccccccHHHHHHHHcCCCCccccccCCC
Q 012529 415 YLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPR 454 (461)
Q Consensus 415 yl~a~~~G~p-P~gG~giGidRLvm~l~g~~~Irdv~~FPr 454 (461)
-+.+-+||.| |---.|+|+|||.|.|.|.++||.. .+|.
T Consensus 313 P~ALaeY~Id~pVMNLGlGVERlaMIl~g~~DVR~m-vYpq 352 (536)
T COG2024 313 PIALAEYGIDYPVMNLGLGVERLAMILHGADDVRSM-VYPQ 352 (536)
T ss_pred hHHHHHcCCCCceeecchhHHHHHHHHhCchHHhhh-hccc
Confidence 3455678887 8889999999999999999999975 3443
|
|
| >PRK07279 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=87.01 E-value=2.3 Score=49.24 Aligned_cols=74 Identities=14% Similarity=0.326 Sum_probs=54.7
Q ss_pred CCEEEEEEEEeeeecC------CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 29 GLMIVVAGWVRTLRAQ------SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~~------~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
+..+.+.|+|.++|.. +.++|+.|.|.+|. +.+++-++. |.+.+ ..|..|.+|.|+|++.... +..
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~--ie~~vFp~~--y~~~~-~~l~~~~~~~v~G~v~~~~---~~~ 955 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKK--LDVTLFPET--YRQYK-DELKEGKFYYLKGKIQERD---GRL 955 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCc--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecC---Cee
Confidence 5568899999886642 24999999999975 999987653 44432 2389999999999997642 246
Q ss_pred EEEEeEEE
Q 012529 103 ELKVNKIV 110 (461)
Q Consensus 103 el~~~~i~ 110 (461)
.+.++++.
T Consensus 956 ~l~~~~i~ 963 (1034)
T PRK07279 956 QMVLQQIQ 963 (1034)
T ss_pred EEEEeeee
Confidence 77777764
|
|
| >cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG | Back alignment and domain information |
|---|
Probab=86.99 E-value=7.5 Score=29.01 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=41.2
Q ss_pred EEEEEeeeec----CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEE
Q 012529 34 VAGWVRTLRA----QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (461)
Q Consensus 34 v~G~v~~~R~----~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i 109 (461)
+.|.|.+.+. .+++.-+.+.|+++. +.+++-... .+. .+. +..|+.+.|.|++..... .++|.-.++
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g~--i~~~~F~~~-~~~-~~~--~~~G~~~~v~Gkv~~~~~---~~qi~~P~~ 72 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTGT--LTLVFFNFQ-PYL-KKQ--LPPGTRVRVSGKVKRFRG---GLQIVHPEY 72 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCCE--EEEEEECCC-HHH-Hhc--CCCCCEEEEEEEEeecCC---eeEEeCCcE
Confidence 4555555432 134666778999864 888775421 121 244 999999999999976532 355544333
|
RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha |
| >cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC) | Back alignment and domain information |
|---|
Probab=86.60 E-value=14 Score=29.11 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=45.8
Q ss_pred EEEEEEEeee--ec--CCC-eEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCC-CCcEEEEEeeEeecCCCCccEEEE
Q 012529 32 IVVAGWVRTL--RA--QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQGNVVPSQGSKQKVELK 105 (461)
Q Consensus 32 v~v~G~v~~~--R~--~~~-~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~-~g~~V~v~G~~~~~~~~~~~~el~ 105 (461)
|+|.|-|-.+ |. .|+ +.-+.|.|.+.. |-|..=.+ ...+.+.. |. .|+.|.|+|.+.-..-. +++.+.
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~S--i~~K~F~~-~~~~~~~~--ik~~G~~v~v~G~v~~D~f~-~e~~~~ 75 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSS--ITVKKFLR-KDEKDKEE--LKSKGDWVRVRGKVQYDTFS-KELVLM 75 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCC--EEEEEecc-CChhHHhh--cccCCCEEEEEEEEEEccCC-CceEEE
Confidence 6788887654 33 233 445789999854 66543322 11223445 88 99999999999765432 367777
Q ss_pred EeEEE
Q 012529 106 VNKIV 110 (461)
Q Consensus 106 ~~~i~ 110 (461)
+..+.
T Consensus 76 i~~i~ 80 (82)
T cd04484 76 INDIE 80 (82)
T ss_pred eeeEE
Confidence 76654
|
Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >PRK13480 3'-5' exoribonuclease YhaM; Provisional | Back alignment and domain information |
|---|
Probab=86.41 E-value=5.2 Score=40.09 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=53.5
Q ss_pred CCEEEEEEEEeeeec----CCC-eEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEE
Q 012529 29 GLMIVVAGWVRTLRA----QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~----~~~-~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~e 103 (461)
|++|..-.-|+++.. .|+ ...+.|.|.||. |...+....... ... +..|++|.|+|++..-+.+ +.
T Consensus 11 g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG~--I~ak~W~~~~~~--~~~--~~~g~vv~v~G~v~~y~g~---~Q 81 (314)
T PRK13480 11 GEQVDHFLLIKSATKGVASNGKPFLTLILQDKSGD--IEAKLWDVSPED--EAT--YVPETIVHVKGDIINYRGR---KQ 81 (314)
T ss_pred CCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCcE--EEEEeCCCChhh--Hhh--cCCCCEEEEEEEEEEECCc---ce
Confidence 455554445555432 233 556678899975 999887654321 334 8999999999999876443 66
Q ss_pred EEEeEEEEeccCC
Q 012529 104 LKVNKIVLVGKSD 116 (461)
Q Consensus 104 l~~~~i~vl~~~~ 116 (461)
+.+..+.++.+..
T Consensus 82 l~i~~i~~~~~~e 94 (314)
T PRK13480 82 LKVNQIRLATEED 94 (314)
T ss_pred EEEEEeEECCCCC
Confidence 8888998887753
|
|
| >PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed | Back alignment and domain information |
|---|
Probab=86.12 E-value=12 Score=33.55 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=54.2
Q ss_pred CCCCEEEEEEEEe--eeecCC---CeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCcc
Q 012529 27 RVGLMIVVAGWVR--TLRAQS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (461)
Q Consensus 27 ~~~~~v~v~G~v~--~~R~~~---~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~ 101 (461)
..|+.++|.|.|. |+...+ .+.| .|.|+.. +|.|....-.++ . .+-|.-|.|+|++... +
T Consensus 55 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~--~v~V~Y~GilPD-----l--FrEG~gVVveG~~~~~--g--- 119 (159)
T PRK13150 55 AVGQRLRVGGMVMPGSVRRDPDSLKVNF-SLYDAEG--SVTVSYEGILPD-----L--FREGQGVVVQGTLEKG--N--- 119 (159)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCcEEEE-EEEcCCc--EEEEEEeccCCc-----c--ccCCCeEEEEEEECCC--C---
Confidence 4689999999999 776652 3565 7889874 588888765542 1 6779999999999442 1
Q ss_pred EEEEEeEEEEeccCCCCC
Q 012529 102 VELKVNKIVLVGKSDPSY 119 (461)
Q Consensus 102 ~el~~~~i~vl~~~~~~~ 119 (461)
.+++ =+||.||+..|
T Consensus 120 -~F~A--~evLAKhdekY 134 (159)
T PRK13150 120 -HVLA--HEVLAKHDENY 134 (159)
T ss_pred -EEEE--eEEEeCCCCCC
Confidence 2344 46899998764
|
|
| >PRK14699 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=85.81 E-value=6.8 Score=41.69 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=58.2
Q ss_pred CEEEEEEEEeeeec-------C---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCC
Q 012529 30 LMIVVAGWVRTLRA-------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK 99 (461)
Q Consensus 30 ~~v~v~G~v~~~R~-------~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~ 99 (461)
..|+|.|+|.++-. . |++.=+.|-|.||. |.+++..+...+ ... |..||+|.+.+-..+.....
T Consensus 177 ~~V~i~gkVl~~~~~R~f~~~dG~~g~v~~~~igDeTG~--ir~tlW~~~a~~--~~~--l~~Gd~v~I~~a~vr~~~~~ 250 (484)
T PRK14699 177 GDLNLTGKVLEISEIRTFQRKDGTSGKVGNLLLGDETGT--LRVTLWDDKTDF--LNQ--IEYGDTVELINAYARENAFT 250 (484)
T ss_pred CceEEEEEEEeccCceEEecCCCCceEEEEEEEEcCCce--EEEEEECccccc--ccc--cCCCCEEEEecceEeecccC
Confidence 45999999987532 1 24555689999974 999998764322 335 89999999876543332222
Q ss_pred ccEEEEEeEEEEeccCCCC
Q 012529 100 QKVELKVNKIVLVGKSDPS 118 (461)
Q Consensus 100 ~~~el~~~~i~vl~~~~~~ 118 (461)
+.+||.+.+.+++.++...
T Consensus 251 ~~~el~~~~~s~i~~~~~~ 269 (484)
T PRK14699 251 QKVELQVGNRSIIRKSEKK 269 (484)
T ss_pred CceEEEecCceEeeccccc
Confidence 4799999988888887543
|
|
| >cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) | Back alignment and domain information |
|---|
Probab=85.07 E-value=7.3 Score=30.42 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=38.9
Q ss_pred CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE-eeEeecCCCCccEEEEEeEE
Q 012529 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQKVELKVNKI 109 (461)
Q Consensus 45 ~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~-G~~~~~~~~~~~~el~~~~i 109 (461)
+++.=+.|.|.|| .|.+++-.... ... +..|++|.++ |.+..-. +.++|.+.+.
T Consensus 22 ~~~~~~~l~D~TG--~i~~~~W~~~~----~~~--~~~G~vv~i~~~~v~~~~---g~~ql~i~~~ 76 (82)
T cd04491 22 GKVQSGLVGDETG--TIRFTLWDEKA----ADD--LEPGDVVRIENAYVREFN---GRLELSVGKN 76 (82)
T ss_pred eEEEEEEEECCCC--EEEEEEECchh----ccc--CCCCCEEEEEeEEEEecC---CcEEEEeCCc
Confidence 5666688899997 49998876542 234 8999999999 7775543 3577777553
|
SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating |
| >PRK12366 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=84.78 E-value=5.9 Score=43.74 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=56.6
Q ss_pred CCCEEEEEEEEeeee---c------CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeec---
Q 012529 28 VGLMIVVAGWVRTLR---A------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPS--- 95 (461)
Q Consensus 28 ~~~~v~v~G~v~~~R---~------~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~--- 95 (461)
.|..++|.|||.++- . .|++.-+.|.|.+| .|++++-.+... .+.. |..|+++.+.+-..+.
T Consensus 290 ~g~~~~I~grV~~~~~~R~f~~~~g~gkv~s~~l~D~tG--~IR~t~w~~~~d--~~~~--l~~G~vy~is~~~vk~y~~ 363 (637)
T PRK12366 290 DGEEVDVKGRIIAISDKREVERDDRTAEVQDIELADGTG--RVRVSFWGEKAK--ILEN--LKEGDAVKIENCKVRTYYD 363 (637)
T ss_pred CCCEEEEEEEEEecCCceEEEcCCCcEEEEEEEEEcCCC--eEEEEEeCchhh--hhcc--cCCCCEEEEecCEEeeccc
Confidence 567899999999863 2 37888899999997 499999876532 1224 7789999998644441
Q ss_pred CCCCccEEEEEeEEEEecc
Q 012529 96 QGSKQKVELKVNKIVLVGK 114 (461)
Q Consensus 96 ~~~~~~~el~~~~i~vl~~ 114 (461)
..+...+||.+..-..+.+
T Consensus 364 ~~~~~~~El~~~~~s~I~~ 382 (637)
T PRK12366 364 NEGEKRVDLNAGYSSEIIK 382 (637)
T ss_pred cCCCcCEEEEcCCceEEEe
Confidence 1233468998866544433
|
|
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.68 E-value=2 Score=49.69 Aligned_cols=118 Identities=11% Similarity=0.094 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeec-CCCC-CCCcceeeeecCCCcccccCCccccCC--Ccccc-CcCcce
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITA-SDCE-GAGEQFCVTTLIPSSREAAESPVDAIP--KTKDG-LIDWSQ 219 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~-~~~e-g~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~~-~~~~~r 219 (461)
-..-.+|+.+...+-+-|.++|++|++||-+.. ++|- +..++..+-..+.....+.- -+++| +..+. ....-|
T Consensus 929 ~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~sG~~v~Lp~--DLr~pfar~vs~N~~~~~K 1006 (1351)
T KOG1035|consen 929 EINNELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLDHSGDVVELPY--DLRLPFARYVSRNSVLSFK 1006 (1351)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeeecCCCCEEEeec--cccchHHHHhhhchHHHHH
Confidence 334567888999999999999999999996664 3332 23333333221110000100 01111 11111 111346
Q ss_pred eEEEecccccCCCCCCCCccccccceeeeccCC----HHHHHHHHHHHHHHH
Q 012529 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQYV 267 (461)
Q Consensus 220 VfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d----~~dlm~~~e~li~~i 267 (461)
-|+|++|||-+.. + |--|++.+++-....+ --+++.++-+++..+
T Consensus 1007 ry~i~rVyr~~~~--~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~ 1055 (1351)
T KOG1035|consen 1007 RYCISRVYRPAIH--N-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEI 1055 (1351)
T ss_pred Hhhhheeeccccc--C-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHH
Confidence 7999999999873 3 9999999999865543 245666666666553
|
|
| >PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=84.19 E-value=6.8 Score=41.16 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=59.7
Q ss_pred CCEEEEEEEEeeeecC-CCeEEEEEEcCccCccEEEEEeCCCcchhhh-hhcCCCCCcEEEEEeeEee-cCCCCccEEEE
Q 012529 29 GLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVP-SQGSKQKVELK 105 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~~-~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~-~~~~l~~g~~V~v~G~~~~-~~~~~~~~el~ 105 (461)
-..|.|.|=|.+.+.+ ++-+|+.|.|.. ..|-||+-+.... .+ -. +..|+-|.|.|.+.- .+.+ .+.|.
T Consensus 23 ~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~--a~i~~~~~~~~~~--~~~~~--~~~G~~v~v~g~~~~y~~~g--~~ql~ 94 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGHWYFTLKDEI--AQIRCVMFKGSAR--RLKFK--PEEGMKVLVRGKVSLYEPRG--DYQLI 94 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCeEEEEEEcCC--cEEEEEEEcChhh--cCCCC--CCCCCEEEEEEEEEEECCCC--CEEEE
Confidence 4679999999999876 667999999997 4599999875421 11 13 889999999999975 3443 69999
Q ss_pred EeEEEEec
Q 012529 106 VNKIVLVG 113 (461)
Q Consensus 106 ~~~i~vl~ 113 (461)
|++|...+
T Consensus 95 v~~i~~~g 102 (438)
T PRK00286 95 VEEIEPAG 102 (438)
T ss_pred EEEeeeCC
Confidence 99998755
|
|
| >KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=83.89 E-value=8 Score=37.67 Aligned_cols=76 Identities=22% Similarity=0.333 Sum_probs=53.2
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeE
Q 012529 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (461)
Q Consensus 30 ~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~ 108 (461)
..|.+.|||.++-....-++.+|-|++|. |=|....... .-.+... |..|.+|.|.|.++...++ ..|.+.+
T Consensus 69 ~~v~~VGivr~~e~~~t~i~y~I~D~tg~--id~r~W~~~~~~~~e~~~--l~~~~yVkv~G~Lk~f~Gk---~sl~~fk 141 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEKSATNITYEIEDGTGQ--IDVRQWFHDNAESEEMPA--LETGTYVKVYGHLKPFQGK---KSLQVFK 141 (265)
T ss_pred EEEEEEEEEEeceecCcceEEEEecCccc--EEEEEeccccchhhhCcc--cccCcEEEeeecccCCCCc---eeEEEEe
Confidence 35889999999998866678899999975 5555544321 1112335 9999999999999765433 4566666
Q ss_pred EEEe
Q 012529 109 IVLV 112 (461)
Q Consensus 109 i~vl 112 (461)
|.-+
T Consensus 142 I~pv 145 (265)
T KOG3108|consen 142 IRPV 145 (265)
T ss_pred eeee
Confidence 5433
|
|
| >COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=83.87 E-value=5.3 Score=41.58 Aligned_cols=79 Identities=13% Similarity=0.208 Sum_probs=58.2
Q ss_pred CCEEEEEEEEeeeecC-CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEe
Q 012529 29 GLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~~-~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~ 107 (461)
-..|.|.|-|.+++.. .+-.|+.|.|... .|+|++-+.....-. -. +..|+-|.|+|++.-=+.+ +.+.|.++
T Consensus 23 ~~~V~v~GEISn~t~~~sgH~YFtLKD~~A--~i~c~mf~~~~~~l~-f~--p~eG~~V~v~G~is~Y~~r-G~YQi~~~ 96 (440)
T COG1570 23 LGQVWVRGEISNFTRPASGHLYFTLKDERA--QIRCVMFKGNNRRLK-FR--PEEGMQVLVRGKISLYEPR-GDYQIVAE 96 (440)
T ss_pred CCeEEEEEEecCCccCCCccEEEEEccCCc--eEEEEEEcCcccccC-CC--ccCCCEEEEEEEEEEEcCC-CceEEEEe
Confidence 3569999999999965 3389999999984 599988775421101 13 8899999999999654332 26889998
Q ss_pred EEEEec
Q 012529 108 KIVLVG 113 (461)
Q Consensus 108 ~i~vl~ 113 (461)
+++--|
T Consensus 97 ~~~p~G 102 (440)
T COG1570 97 SMEPAG 102 (440)
T ss_pred cCCcCC
Confidence 887533
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=83.70 E-value=8.2 Score=43.04 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=52.5
Q ss_pred CCCCEEEEEEEEeeeecC---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEE
Q 012529 27 RVGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~e 103 (461)
..|+.|+|.|.|.+.+.. +++.-+.+.|++|. +++++=.-...|- .+. ++.|+.+.|.|++..... .++
T Consensus 57 ~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~--i~l~~F~~n~~~~-~~~--l~~G~~~~v~Gkv~~~~~---~~q 128 (681)
T PRK10917 57 RPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGN--LTLRFFNFNQPYL-KKQ--LKVGKRVAVYGKVKRGKY---GLE 128 (681)
T ss_pred CCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeE--EEEEEEccCcHHH-Hhh--CCCCCEEEEEEEEEecCC---eEE
Confidence 458899999999886433 35677888999974 8887752111221 244 999999999999976321 355
Q ss_pred EEEeEEEEe
Q 012529 104 LKVNKIVLV 112 (461)
Q Consensus 104 l~~~~i~vl 112 (461)
+.-.++.++
T Consensus 129 m~~P~~~~~ 137 (681)
T PRK10917 129 MVHPEYEVL 137 (681)
T ss_pred EEcCEEEec
Confidence 555555443
|
|
| >PRK07217 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=82.95 E-value=16 Score=36.32 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=65.6
Q ss_pred eeccccCCCcCCCCCCCCEEEEEEEEeee--ecCCCeEE-EEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE
Q 012529 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTL--RAQSSVTF-IEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~v~v~G~v~~~--R~~~~~~F-i~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~ 89 (461)
.|+||.. .++-|+|.|+|.++ +.+..++. -.|-|.||. |..++..+.. ... |..|++|.+.
T Consensus 74 kI~Di~~--------~~~~VsV~aKVl~l~e~~~~si~qvGllgDETG~--IkfT~W~~s~----~~~--leeGd~~rI~ 137 (311)
T PRK07217 74 NIADIDE--------PEQWVDVTAKVVQLWEPSSDSIAQVGLLGDETGT--IKFTKWAKSD----LPE--LEEGKSYLLK 137 (311)
T ss_pred eeeecCC--------CCCcEEEEEEEEEecCCCCCceEEEEEEEcCCce--EEEEEccCCC----CCc--ccCCCEEEEE
Confidence 4666654 46779999999987 33566777 457899975 8888876421 223 8999999999
Q ss_pred eeEeecCCCCccEEEEEeEEEEeccCCCCCCC
Q 012529 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (461)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl 121 (461)
+-.+..-.+ ..+|.+.+.+.+...+.+.++
T Consensus 138 na~v~ey~G--~~~lnlg~~t~I~~~de~IeV 167 (311)
T PRK07217 138 NVVTDEYQG--RFSVKLNRTTSIEELDEDIEV 167 (311)
T ss_pred eEEEeeECC--EEEEEeCCceEEEeCCCCccc
Confidence 887765544 689999888777776655554
|
|
| >PRK07211 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=82.81 E-value=8 Score=41.00 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=52.7
Q ss_pred CEEEEEEEEeeeec-----------CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCC
Q 012529 30 LMIVVAGWVRTLRA-----------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGS 98 (461)
Q Consensus 30 ~~v~v~G~v~~~R~-----------~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~ 98 (461)
..|+|.|||.++-. .|++.=++|-|.||. |++++..+...- .... |..|+++.|.|.+++.
T Consensus 64 ~~vtI~aRV~~~~~~Rt~~~~~~~~eGkv~~v~l~DeTG~--Ir~TlW~d~ad~-~~~~--Le~GdV~~I~~~~~~~--- 135 (485)
T PRK07211 64 DEVKFLAKVLSIGDLRTFERDGEDEDGRVINVEVADETGS--VRVAFWDEQAVA-AEEE--LEVGQVLRIKGRPKDG--- 135 (485)
T ss_pred CceEEEEEEeEccCceEEEeCCCCCCcEEEEEEEEcCCCe--EEEEEechHhHh-hhcc--cCCCCEEEEeceEecc---
Confidence 56999999988633 368899999999974 999998764211 1224 9999999999977532
Q ss_pred CccEEEEEeEE
Q 012529 99 KQKVELKVNKI 109 (461)
Q Consensus 99 ~~~~el~~~~i 109 (461)
-+.+||.+..+
T Consensus 136 ys~~El~i~~v 146 (485)
T PRK07211 136 YNGLEVSVDKV 146 (485)
T ss_pred ccceEEEEeeE
Confidence 23578888854
|
|
| >PRK15491 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=81.92 E-value=11 Score=38.83 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=57.3
Q ss_pred CEEEEEEEEeeeec-------C---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEe-eEeecCCC
Q 012529 30 LMIVVAGWVRTLRA-------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG-NVVPSQGS 98 (461)
Q Consensus 30 ~~v~v~G~v~~~R~-------~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G-~~~~~~~~ 98 (461)
..|.|.|+|.++-. . +++.=+.|.|.||. |.+++..+...+ +.. |..|++|.+.+ .++.+. -
T Consensus 177 ~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG~--Ir~t~W~~~a~~--~~~--l~~Gd~V~i~~~~~r~~~-~ 249 (374)
T PRK15491 177 SDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETGK--IRVTLWDGKTDL--ADK--LENGDSVEIINGYARTNN-Y 249 (374)
T ss_pred ccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCCe--EEEEEecchhcc--ccc--CCCCCEEEEEeceEEEec-c
Confidence 45999999988743 2 35666889999974 999998765322 234 89999999975 454432 2
Q ss_pred CccEEEEEeEEEEeccCCC
Q 012529 99 KQKVELKVNKIVLVGKSDP 117 (461)
Q Consensus 99 ~~~~el~~~~i~vl~~~~~ 117 (461)
.+.+||.+.+-..+.+|..
T Consensus 250 ~g~~El~~~~~s~I~~~~~ 268 (374)
T PRK15491 250 SQEVEIQIGNHGSLRKTDR 268 (374)
T ss_pred CCCEEEEeCCCceEEECCc
Confidence 3479999977666777753
|
|
| >PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed | Back alignment and domain information |
|---|
Probab=81.83 E-value=21 Score=32.00 Aligned_cols=75 Identities=20% Similarity=0.334 Sum_probs=53.6
Q ss_pred CCCCEEEEEEEEe--eeecC-C--CeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCcc
Q 012529 27 RVGLMIVVAGWVR--TLRAQ-S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (461)
Q Consensus 27 ~~~~~v~v~G~v~--~~R~~-~--~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~ 101 (461)
..|+.++|.|.|. |+... + .+.| .|.|+. .++.|....-.++ . .+-|.-|.|+|++... +
T Consensus 55 ~~g~~iRvgG~V~~GSi~r~~~~l~v~F-~vtD~~--~~v~V~Y~GilPD-----l--FrEG~gVVveG~~~~~--g--- 119 (160)
T PRK13165 55 EVGQRLRVGGMVMPGSVQRDPNSLKVSF-TLYDAG--GSVTVTYEGILPD-----L--FREGQGIVAQGVLEEG--N--- 119 (160)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCeEEEE-EEEcCC--eEEEEEEcccCCc-----c--ccCCCeEEEEEEECCC--C---
Confidence 4689999999999 77665 3 3566 778986 4588887755442 1 6779999999999532 1
Q ss_pred EEEEEeEEEEeccCCCCC
Q 012529 102 VELKVNKIVLVGKSDPSY 119 (461)
Q Consensus 102 ~el~~~~i~vl~~~~~~~ 119 (461)
.+++ =+||.||+..|
T Consensus 120 -~F~A--~~vLAKhdekY 134 (160)
T PRK13165 120 -HIEA--KEVLAKHDENY 134 (160)
T ss_pred -eEEE--EEEEecCCCCC
Confidence 2344 36899998764
|
|
| >TIGR00237 xseA exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Probab=81.28 E-value=9 Score=40.22 Aligned_cols=76 Identities=14% Similarity=0.328 Sum_probs=57.7
Q ss_pred CEEEEEEEEeeeecC-CCeEEEEEEcCccCccEEEEEeCCCcchhhhh-hcCCCCCcEEEEEeeEeec-CCCCccEEEEE
Q 012529 30 LMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVK-SGLITTGASIWIQGNVVPS-QGSKQKVELKV 106 (461)
Q Consensus 30 ~~v~v~G~v~~~R~~-~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~-~~~l~~g~~V~v~G~~~~~-~~~~~~~el~~ 106 (461)
..|.|.|=|.+.+.+ ++-+|+.|.|.. ..|.||+-+.... .++ . +..|+-|.|.|.+.-- +.+ .+.|.|
T Consensus 18 ~~v~V~GEisn~~~~~sGH~YFtLkD~~--a~i~~vmf~~~~~--~l~f~--~~~G~~V~v~g~v~~y~~~G--~~ql~v 89 (432)
T TIGR00237 18 LQVWIQGEISNFTQPVSGHWYFTLKDEN--AQVRCVMFRGNNN--RLKFR--PQNGQQVLVRGGISVYEPRG--DYQIIC 89 (432)
T ss_pred CcEEEEEEecCCeeCCCceEEEEEEcCC--cEEEEEEEcChhh--CCCCC--CCCCCEEEEEEEEEEECCCC--cEEEEE
Confidence 379999999999875 567889999987 4599998776421 111 3 7899999999999643 333 589999
Q ss_pred eEEEEec
Q 012529 107 NKIVLVG 113 (461)
Q Consensus 107 ~~i~vl~ 113 (461)
++++.-+
T Consensus 90 ~~i~~~G 96 (432)
T TIGR00237 90 FEMQPAG 96 (432)
T ss_pred EEeccCC
Confidence 9988644
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. |
| >COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.26 E-value=7.8 Score=40.08 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=53.2
Q ss_pred CEEEEEEEEeee--ecCCCeEEEEEEcCccCccEEEEEeCCCcchhh-hhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 30 LMIVVAGWVRTL--RAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 30 ~~v~v~G~v~~~--R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
..++|.|.|... ..-|+..|+.+.|+.|. |-+++-....+|.. +.. |.+||.|.+.|.++... |.+
T Consensus 267 ~~~~v~g~v~~~p~~ieGghv~v~i~d~~G~--I~~~A~eptk~fr~~a~~--L~pGD~i~~~G~~~~~~-------~n~ 335 (421)
T COG1571 267 SKYRVVGRVEAEPRAIEGGHVVVEITDGEGE--IGAVAFEPTKEFRELARK--LIPGDEITVYGSVKPGT-------LNL 335 (421)
T ss_pred cceEEEEEEecccEEeeCCEEEEEecCCCce--EEEEEecccccchHHHHh--cCCCCEEEEecCccccc-------eeE
Confidence 457888888764 33499999999999973 77777554434433 567 99999999999995532 666
Q ss_pred eEEEEecc
Q 012529 107 NKIVLVGK 114 (461)
Q Consensus 107 ~~i~vl~~ 114 (461)
+++.|+.-
T Consensus 336 ek~~v~~l 343 (421)
T COG1571 336 EKFQVLKL 343 (421)
T ss_pred EEEEEEEe
Confidence 66666443
|
|
| >PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed | Back alignment and domain information |
|---|
Probab=80.88 E-value=24 Score=31.30 Aligned_cols=75 Identities=20% Similarity=0.333 Sum_probs=53.0
Q ss_pred CCCCEEEEEEEEe--eeec-C-CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 27 RVGLMIVVAGWVR--TLRA-Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 27 ~~~~~v~v~G~v~--~~R~-~-~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
..|+.|+|.|+|. ++.. . ..+.| .|.|+. ..|.|..+...++ . .+-|..|.|+|++... -
T Consensus 49 ~~g~~vrvgG~V~~gSi~~~~~~~~~F-~ltD~~--~~i~V~Y~G~lPd-----~--F~eg~~VVv~G~~~~~------g 112 (148)
T PRK13254 49 PAGRRFRLGGLVEKGSVQRGDGLTVRF-VVTDGN--ATVPVVYTGILPD-----L--FREGQGVVAEGRLQDG------G 112 (148)
T ss_pred cCCCeEEEeEEEecCcEEeCCCCEEEE-EEEeCC--eEEEEEECCCCCc-----c--ccCCCEEEEEEEECCC------C
Confidence 5689999999996 3543 3 56676 678886 4688888765442 2 6779999999999431 1
Q ss_pred EEEEeEEEEeccCCCCC
Q 012529 103 ELKVNKIVLVGKSDPSY 119 (461)
Q Consensus 103 el~~~~i~vl~~~~~~~ 119 (461)
.++++ +||.||+..|
T Consensus 113 ~F~A~--~vLaKc~skY 127 (148)
T PRK13254 113 VFVAD--EVLAKHDENY 127 (148)
T ss_pred eEEEE--EEEecCCCCC
Confidence 34444 6889997654
|
|
| >COG3689 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.65 E-value=8 Score=37.27 Aligned_cols=89 Identities=11% Similarity=0.133 Sum_probs=57.2
Q ss_pred CCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc----chhhhhhcCCCCCcEEEEEeeEeecCC--
Q 012529 24 GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQVKSGLITTGASIWIQGNVVPSQG-- 97 (461)
Q Consensus 24 ~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~----~~~~~~~~~l~~g~~V~v~G~~~~~~~-- 97 (461)
+.+..|++|.+.|+|-+=-..++-.++..| -|+ +=|++++... ..+.... ++..+.|.|+|++....-
T Consensus 170 pdef~Gk~Ie~tGFVy~~~~~~~N~lflaR--Fgi--icC~ADa~vygl~v~~~~~~~--y~ndtWltvkGtl~~e~~~~ 243 (271)
T COG3689 170 PDEFAGKKIEFTGFVYNDESFPKNYLFLAR--FGI--ICCAADAGVYGLLVELDNQTD--YKNDTWLTVKGTLSSEYLSD 243 (271)
T ss_pred chhhcCceEEEEEEEECCCCCCcceeehhh--hhe--eeeeccceeEEEEEEcccccc--CCCCceEEEEeEEEeeecCc
Confidence 557889999999999663333333344444 222 4455555431 1212234 899999999999976422
Q ss_pred -CCccEEEEEeEEEEeccCCCC
Q 012529 98 -SKQKVELKVNKIVLVGKSDPS 118 (461)
Q Consensus 98 -~~~~~el~~~~i~vl~~~~~~ 118 (461)
.++-.-|+|++++++-+...+
T Consensus 244 ~~~~ipvi~v~sv~~I~kP~nP 265 (271)
T COG3689 244 FKKRIPVIEVDSVEVIPKPANP 265 (271)
T ss_pred hhhcCcEEEeeeeeecCCCCCC
Confidence 233467899999998887654
|
|
| >PRK07218 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=80.43 E-value=12 Score=39.12 Aligned_cols=82 Identities=16% Similarity=0.138 Sum_probs=56.5
Q ss_pred eeeccccCCCcCCCCCCCCEEEEEEEEeeee--------cCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCC
Q 012529 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR--------AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (461)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R--------~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (461)
..|+||.+ .++.|.|.|+|-++- .-+.+.=+.|-|.||. +.+++..+. . |..|
T Consensus 59 ~kI~Di~~--------~~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG~--Ir~tlW~~~-------~--l~~G 119 (423)
T PRK07218 59 KDIKELST--------DDKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETGT--ISYTAWKDF-------G--LSPG 119 (423)
T ss_pred ccHhhCCC--------CCceeEEEEEEEEecceeEecCCCceEEEEEEEECCCCe--EEEEEECCC-------C--CCCC
Confidence 45666654 247799999998873 2256777778888864 888887642 3 9999
Q ss_pred cEEEEEeeEeecCCCCccEEEEEeEEEEecc
Q 012529 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (461)
Q Consensus 84 ~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~ 114 (461)
|+|.+.+-..+.-.+ .++|.+.+-+-+..
T Consensus 120 dvv~I~na~vre~~g--~~el~ig~~t~I~~ 148 (423)
T PRK07218 120 DTVTIGNAGVREWDG--RPELNIGESTTVSL 148 (423)
T ss_pred CEEEEeccEeeccCC--ceEEeccCcceEEE
Confidence 999999766554333 58888765444443
|
|
| >PF15072 DUF4539: Domain of unknown function (DUF4539) | Back alignment and domain information |
|---|
Probab=80.20 E-value=8.9 Score=30.70 Aligned_cols=53 Identities=11% Similarity=0.247 Sum_probs=41.2
Q ss_pred EEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCCCCcEEEEEee
Q 012529 33 VVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQGN 91 (461)
Q Consensus 33 ~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~~g~~V~v~G~ 91 (461)
.+.|.|++++..+.=+|+.|.|.||. +++.+.++.. .| -.. |..|+++-.+-.
T Consensus 6 ~l~v~Iks~~~~~~D~~v~l~DpTG~--i~~tiH~~v~~~y--~~~--l~~GavLlLk~V 59 (86)
T PF15072_consen 6 CLVVIIKSIVPSSEDAFVVLKDPTGE--IRGTIHRKVLEEY--GDE--LSPGAVLLLKDV 59 (86)
T ss_pred EEEEEEEEeeccCCCeEEEEECCCCc--EEEEEeHHHHhhc--CCc--cccCEEEEEeee
Confidence 58899999999877789999999974 9999987642 22 123 888888887743
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 461 | ||||
| 1x54_A | 434 | Crystal Structure Of Asparaginyl-trna Synthetase Fr | 5e-52 | ||
| 3m4p_A | 456 | Entamoeba Histolytica Asparaginyl-Trna Synthetase ( | 1e-40 | ||
| 1b8a_A | 438 | Aspartyl-trna Synthetase Length = 438 | 2e-36 | ||
| 3nel_A | 438 | Aspartyl-Trna Synthetase Complexed With Aspartic Ac | 3e-36 | ||
| 1wyd_A | 429 | Crystal Structure Of Aspartyl-Trna Synthetase From | 4e-36 | ||
| 2xgt_A | 435 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 2e-34 | ||
| 2xti_A | 437 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 2e-34 | ||
| 1n9w_A | 422 | Crystal Structure Of The Non-Discriminating And Arc | 3e-24 | ||
| 1asy_A | 490 | Class Ii Aminoacyl Transfer Rna Synthetases: Crysta | 1e-23 | ||
| 1eov_A | 487 | Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 | 1e-23 | ||
| 3i7f_A | 548 | Aspartyl Trna Synthetase From Entamoeba Histolytica | 7e-20 | ||
| 1nnh_A | 294 | Hypothetical Protein From Pyrococcus Furiosus Pfu-1 | 3e-08 | ||
| 3e9h_A | 493 | Lysyl-Trna Synthetase From Bacillus Stearothermophi | 4e-08 | ||
| 1eqr_A | 590 | Crystal Structure Of Free Aspartyl-Trna Synthetase | 4e-08 | ||
| 1c0a_A | 585 | Crystal Structure Of The E. Coli Aspartyl-Trna Synt | 5e-08 | ||
| 3p8t_A | 294 | Crystal Structure Of The Archaeal Asparagine Synthe | 6e-08 | ||
| 1lyl_A | 504 | Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe | 2e-07 | ||
| 1bbu_A | 504 | Lysyl-Trna Synthetase (Lyss) Complexed With Lysine | 5e-07 | ||
| 4ah6_A | 617 | Human Mitochondrial Aspartyl-Trna Synthetase Length | 2e-04 | ||
| 1efw_A | 580 | Crystal Structure Of Aspartyl-Trna Synthetase From | 2e-04 | ||
| 4ex5_A | 529 | Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr | 5e-04 |
| >pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From Pyrococcus Horikoshii Complexed With Asparaginyl-adenylate Length = 434 | Back alignment and structure |
|
| >pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 | Back alignment and structure |
|
| >pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 | Back alignment and structure |
|
| >pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 | Back alignment and structure |
|
| >pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 | Back alignment and structure |
|
| >pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With The Sulphamoyl Analogue Of Asparaginyl-Adenylate Length = 435 | Back alignment and structure |
|
| >pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg Length = 437 | Back alignment and structure |
|
| >pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 | Back alignment and structure |
|
| >pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 | Back alignment and structure |
|
| >pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 | Back alignment and structure |
|
| >pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 | Back alignment and structure |
|
| >pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964 Length = 294 | Back alignment and structure |
|
| >pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 | Back alignment and structure |
|
| >pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 | Back alignment and structure |
|
| >pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 | Back alignment and structure |
|
| >pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A Length = 294 | Back alignment and structure |
|
| >pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase Length = 617 | Back alignment and structure |
|
| >pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus Thermophilus Complexed To Trnaasp From Escherichia Coli Length = 580 | Back alignment and structure |
|
| >pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From Burkholderia Thailandensis Bound To Lysine Length = 529 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 | Back alignment and structure |
|---|
Score = 602 bits (1555), Expect = 0.0
Identities = 148/463 (31%), Positives = 231/463 (49%), Gaps = 44/463 (9%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD- 68
+K+ +VK + G + +AGWV T F+ + D + + +Q V+ +
Sbjct: 3 EKVYCQEVKP------ELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNV 54
Query: 69 --AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS-YPIQKKR 125
E +++ K + +S+ ++G V + + E+ V K+ ++ P ++
Sbjct: 55 VGEETFEKAKK--LGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQ 112
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
S E L HL RT A+ +V+ L A ++ ++G+ + PI+ EG
Sbjct: 113 ASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGAT 172
Query: 186 QFCV------TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLA 239
F + L S++ E+ + + +V++ P+FRAE S T RHL
Sbjct: 173 LFKLKYFDKYAYLSQSAQLYLEAAIFGL----------EKVWSLTPSFRAEKSRTRRHLT 222
Query: 240 EFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 299
EFW +E E A+ DL D M + Y+V+ L+ K++++ F + E
Sbjct: 223 EFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTT------LKNTE 276
Query: 300 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 359
F ++SY +AI++L E WG DL ++ ER LTEE F P V YPK IK
Sbjct: 277 PPFPRISYDEAIDILQSKGVNVE----WGDDLGADEERVLTEE-FDR-PFFVYGYPKHIK 330
Query: 360 AFYMRQN-DDGRTVAAMDMLVPR-IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 417
AFYM+++ +D R V A DML P GE+IGGSQRE+ + L R+ E ++ Y WYLD
Sbjct: 331 AFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLD 390
Query: 418 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460
LR YGSVPH+GFGLG ERLV + +++IR A FPRTP +
Sbjct: 391 LRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARLY 433
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 | Back alignment and structure |
|---|
Score = 597 bits (1541), Expect = 0.0
Identities = 121/470 (25%), Positives = 203/470 (43%), Gaps = 49/470 (10%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
I D G ++ GW +R ++ F+E+ DGS QCV+
Sbjct: 17 PIVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFG 67
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ--------KVELKVNKIVLVGKSDP-S 118
+ L T S+ I G + G +E++V + ++G+S
Sbjct: 68 KELCEPEKVKLL-TRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDL 126
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
I K S H+ R+ V ++R+ + + K++ +N F I P I +
Sbjct: 127 ENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKT 186
Query: 179 DCEGAGEQFCV------TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENS 232
CEG F + L SS+ ES + ++ + + ++RAE S
Sbjct: 187 QCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIASL----------GKSFCMLSSYRAEQS 236
Query: 233 NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 292
T RHLAE+ +E EL F +D + + V+ ++ + + N ++
Sbjct: 237 RTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLK----- 291
Query: 293 RLSTVAERDFVQLSYTDAIELLIKAK-KKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIV 351
+ R F +++Y DAI+ + ++G D+ + ER +T+E GCP+ +
Sbjct: 292 ----LPTRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMTDEI--GCPIFM 345
Query: 352 SDYPKEIKAFYMRQ-NDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD 410
+P ++KAFYM + ++D+L+P +GE++GGS R + L G LN D
Sbjct: 346 IHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPD 405
Query: 411 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460
Y+WY R YGS PH G+GLG ERLV + G ++IR +PR E
Sbjct: 406 PYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCE 455
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 | Back alignment and structure |
|---|
Score = 594 bits (1535), Expect = 0.0
Identities = 113/450 (25%), Positives = 203/450 (45%), Gaps = 38/450 (8%)
Query: 23 EGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
+ + + + GW+ +R Q S+ F + DG+ +Q ++ + +
Sbjct: 5 DLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDALT--VN 60
Query: 82 TGASIWIQGNVVPSQGSKQK---VELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAH 136
T ++ I G + K+ EL + ++G + P + + S + + H
Sbjct: 61 TECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRH 120
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV------T 190
L R A+ R+R A A + F G++ ++ P + + EG F + +
Sbjct: 121 LVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYFGEQS 180
Query: 191 TLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 250
L SS+ E+ + + V+ ++RAE S T RHLAE+ +E E F
Sbjct: 181 FLTQSSQLYLETCIPTLGD----------VFCIAQSYRAEKSRTRRHLAEYAHVEAECPF 230
Query: 251 ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 310
L D M + V +L + + I ER F+++ Y DA
Sbjct: 231 ITLDDLMEKIEELVCDTVDRLLADE--EAKKLLEHINPKF-----QPPERPFLRMEYKDA 283
Query: 311 IELLIKA--KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-D 367
I+ L + + +F +G D+ ER++T+ P++++ +P EIKAFYM+++
Sbjct: 284 IKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI--NKPILLNRFPSEIKAFYMQRDAQ 341
Query: 368 DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHA 427
D ++D+L+P +GE++GGS R + + L ++++ Y+WYLD R YG+ PH
Sbjct: 342 DNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHG 401
Query: 428 GFGLGFERLVQFATGVENIRDAIPFPRTPG 457
G+GLG ER + + T +IRD +PR G
Sbjct: 402 GYGLGLERFICWLTNTNHIRDVCLYPRFVG 431
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
Score = 508 bits (1310), Expect = e-179
Identities = 121/450 (26%), Positives = 205/450 (45%), Gaps = 40/450 (8%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGA 84
+ G + VAGWV ++ + F+ + D + +Q + K + +
Sbjct: 13 ELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSED 70
Query: 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKRVSREFLRTKAHLRPRT 141
+ ++G V + +K E+ KIV++ +++ P+ K + + + R
Sbjct: 71 VVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRR 130
Query: 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV------TTLIPS 195
A+ ++R+++ A FF ENGFI I +P I A+ EG E F + L S
Sbjct: 131 PEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQS 190
Query: 196 SREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-ADLK 254
+ + + + +VY P FRAE NT+RHL E W I+ E+AF D +
Sbjct: 191 PQLYKQIMMAS---------GLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEE 241
Query: 255 DDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL 314
+ M+ + + + Y+ ++ +++D N +E+ + F ++SY A+E+L
Sbjct: 242 EVMSFLERLVAHAINYVREHNAKELDILNFELEEP---------KLPFPRVSYDKALEIL 292
Query: 315 IKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFY-MRQNDDGR 370
K+ WG D+ +E ER L + E + YP E K FY M+ ++
Sbjct: 293 GDLGKEIP----WGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPE 348
Query: 371 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFG 430
A D+ R E+ G QRE R + L ++ E LN +S+ +YL YG PH GFG
Sbjct: 349 ICRAFDLEY-RGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFG 407
Query: 431 LGFERLVQFATGVENIRDAIPFPRTPGSVE 460
LG ERL++ + NIR+ I FPR +
Sbjct: 408 LGAERLIKQMLDLPNIREVILFPRDRRRLT 437
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
Score = 506 bits (1306), Expect = e-179
Identities = 118/461 (25%), Positives = 203/461 (44%), Gaps = 43/461 (9%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+ I DV + G ++ AGWV LR FI + D + L Q V+ +
Sbjct: 2 YRSHFIADVTP------EYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKN 53
Query: 69 AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKR 125
+ + + +T + I ++G V + + + +EL +I L+ K+ P+ K +
Sbjct: 54 SSAFGISQE--LTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVK 111
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
+ + L R AV ++++ A + + GFI I +P I AS EG +
Sbjct: 112 ADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQ 171
Query: 186 QFCV------TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLA 239
F V L S + E + + V+ P +RAE S+T HLA
Sbjct: 172 LFPVIYFGKEAFLAQSPQLYKELMAGVVER----------VFEVAPAWRAEESDTPFHLA 221
Query: 240 EFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 299
EF ++ E+AFAD D M L +V+ I + KE++ N + +
Sbjct: 222 EFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPE---------VK 272
Query: 300 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK 359
+L YT+AIE+L + +G D+ + R L EE + D+P + +
Sbjct: 273 IPIKRLKYTEAIEILRSKGYNIK----FGDDIGTPELRILNEE-LKEDLYFIVDWPSDAR 327
Query: 360 AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLR 419
FY + + ++ L+ + E++ GS R + E LE L + L +S+ ++L
Sbjct: 328 PFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWF 387
Query: 420 HYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460
YG PHAGFG+G RL+ TG++++++ +PFPR +
Sbjct: 388 DYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRLT 428
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
Score = 463 bits (1195), Expect = e-162
Identities = 106/464 (22%), Positives = 194/464 (41%), Gaps = 58/464 (12%)
Query: 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE 70
++ + D+K VG + + G++ R + F+ + D S + +Q V
Sbjct: 2 RVLVRDLK-------AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGGLKL 52
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ----KKRV 126
+++ ++G VV + + +E++ ++ ++ + P++ + R
Sbjct: 53 ---------PLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRA 103
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
+ + L ++ R A +V+ AL ++ F I +P + + EG
Sbjct: 104 NPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGL 163
Query: 187 FCV------TTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAE 240
F V L S + + V + VY P +R E +TSRHL E
Sbjct: 164 FGVDYFEKRAYLAQSPQLYKQIMVGVFER----------VYEVAPVWRMEEHHTSRHLNE 213
Query: 241 FWMIEPELAF-ADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 299
+ ++ E+ F AD +D M A L ++ L+ +++
Sbjct: 214 YLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP---------SFP 264
Query: 300 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPK 356
+D +L++ +A +L K++ G DL E ER L E E +G + V+ YP+
Sbjct: 265 QDIPRLTHAEAKRIL---KEELG--YPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPR 319
Query: 357 EIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYL 416
++ FY +DG T + D+L + E+ G QR R E L L ++ +++ YL
Sbjct: 320 SVRPFYTYPEEDGTT-RSFDLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYL 377
Query: 417 DLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460
++ YG PH GF +G ERL Q G+ N+R A FPR +
Sbjct: 378 EVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRDRHRLT 421
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 | Back alignment and structure |
|---|
Score = 424 bits (1092), Expect = e-148
Identities = 70/334 (20%), Positives = 126/334 (37%), Gaps = 55/334 (16%)
Query: 135 AHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITA----SDCEGAGEQFCVT 190
+ + ++ + FF + GF W+ II+ + AGE
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPA 61
Query: 191 TLIPSSREA--AESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN--SNTSRHLAEFWMIEP 246
+ + S + K + +++ P R E+ + RH EF ++
Sbjct: 62 EVEIYGVKMRLTHSM--ILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDF 119
Query: 247 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLS 306
E+ A ++D M + + R + + F
Sbjct: 120 EVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTK-----------------RFEVFE 162
Query: 307 YTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN 366
Y++ +E ++G D ++ E P + + P+E FY R+
Sbjct: 163 YSEVLE-------------EFGSDEKASQEM--------EEPFWIINIPRE---FYDREV 198
Query: 367 DDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV- 424
D D+++P GE+ G +RE E + ++ + LN DS+ YL++ G +
Sbjct: 199 DG--FWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLK 256
Query: 425 PHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 458
P AG G+G ERLV+F G ++I + PFPR PG
Sbjct: 257 PSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGI 290
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
Score = 427 bits (1101), Expect = e-147
Identities = 108/500 (21%), Positives = 201/500 (40%), Gaps = 82/500 (16%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q ++ F+ + + L +Q ++ +
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKA 73
Query: 68 DAEGY---DQVKS-GLITTGASIWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPS 118
+ EG + VK G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 74 NKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEA 133
Query: 119 YPIQKKRVSR---------------EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163
PI + SR + + RT T A+ R++ + ++
Sbjct: 134 LPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLA 193
Query: 164 ENGFIWISSPIITASDCEGAGEQFCVT-----------------TLIPSSREAAESPVDA 206
F + +P + + EG F VT LI + E
Sbjct: 194 TKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFE-------- 245
Query: 207 IPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD-MACATAYLQ 265
+VY GP FRAENSNT RH+ EF ++ E+AF + + + +
Sbjct: 246 ------------RVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFV 293
Query: 266 YVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLV 325
++ + +++ ++ + V+L+Y + IE+L A K+
Sbjct: 294 FIFSELPKRFAHEIELVRKQYP---VEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIG--- 347
Query: 326 KWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRI 382
DL +E+E++L + + + I+ +P EI+ FY + + R
Sbjct: 348 -DFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRG 406
Query: 383 GELIGGSQREERLEYLEGRLDELKLNRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQFA 440
E++ G+QR L+ R+ L+ + Y D YG PHAG G+G ER+V F
Sbjct: 407 EEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFY 466
Query: 441 TGVENIRDAIPFPRTPGSVE 460
++NIR A FPR P +
Sbjct: 467 LDLKNIRRASLFPRDPKRLR 486
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
Score = 372 bits (958), Expect = e-125
Identities = 88/382 (23%), Positives = 150/382 (39%), Gaps = 31/382 (8%)
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVAR 149
+ K + + + + + +VS++ L RT T A+ R
Sbjct: 186 AKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFR 245
Query: 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV------TTLIPSSREAAESP 203
+++A +F F+ I +P + EG F V L S + +
Sbjct: 246 IQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMA 305
Query: 204 VDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD-MACATA 262
+ D+ +V+ GP FRAENSNT RHL EF ++ E+ + + +
Sbjct: 306 IMG---------DFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEK 356
Query: 263 YLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFE 322
++ I +++ + R F++L+Y +AIE+L + +
Sbjct: 357 LFTFIFDEIPKRFPDELKVIRKQYPF------EDLIYRPFLRLTYKEAIEMLRASGETIG 410
Query: 323 FLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDML 378
D + E L E + I+ +P I+ FY M DD + D+
Sbjct: 411 ----DYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVF 466
Query: 379 VPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQ 438
V E+ G+QR E+L R E ++ + Y++ +GS PHAG G+G ER+
Sbjct: 467 VRG-QEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITM 525
Query: 439 FATGVENIRDAIPFPRTPGSVE 460
G+ NIR FPR P +
Sbjct: 526 LYLGIPNIRKVTLFPRDPIRLN 547
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 421 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455
YG+ PH G G +RL+ TG +IR+ I FP+
Sbjct: 517 YGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKN 551
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 6e-05
Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 17/169 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L +Q V + Y + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVR 70
Query: 88 IQGNVVP-SQGSKQ----KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLR--- 138
+G V + + + +VE++++ + ++ ++ P +P+ E LR
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKY 130
Query: 139 ----PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
R R+R+ + A F GF+ + +P +T S EGA
Sbjct: 131 RYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA 179
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 421 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455
YG+ PHAG G +RL TG +NIRD I FP+T
Sbjct: 523 YGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKT 557
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 45/260 (17%), Positives = 77/260 (29%), Gaps = 56/260 (21%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK-ED 278
V+ +FR E H EF M+E D+ M L ++ +LD E
Sbjct: 112 VFQLCRSFRNEEMGR-YHNPEFTMLEWYRPHYDMYRLMN-EVDDL---LQQVLDCPAAES 166
Query: 279 MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD-LQSEH-E 336
+ + ++ ID + T E+ K + D L
Sbjct: 167 LSYQQAFLRYLEID---------PLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFT 217
Query: 337 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE----LIGGS--- 389
+ P V +P + +D R+ E G
Sbjct: 218 FGVEPNIGKEKPTFVYHFPASQASLAQISTED-----------HRVAERFEVYYKGIELA 266
Query: 390 -----------QREERLE-----YLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGF 433
Q++ R E L + ++++ ++ G +G LG
Sbjct: 267 NGFHELTDAREQQQ-RFEQDNRKRAARGLPQHPIDQN----LIEALKVGMPDCSGVALGV 321
Query: 434 ERLVQFATGVENIRDAIPFP 453
+RLV A G E + + I F
Sbjct: 322 DRLVMLALGAETLAEVIAFS 341
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 5e-07
Identities = 68/276 (24%), Positives = 102/276 (36%), Gaps = 74/276 (26%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 276
VY G FR E +T RH EF M+E A+AD +D M + ++ +L K
Sbjct: 245 VYEIGRVFRNEGIST-RHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQY 303
Query: 277 --EDMDFFNTWIEKGIIDRLSTVAERDF-VQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 333
+D W ++D + DF Q+S +A EL + + + +G
Sbjct: 304 GEHLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFG----- 358
Query: 334 EHERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPRIGE 384
++ E F P + +P EI A ++N D PR +
Sbjct: 359 ----HIVNEFFEQKVEDKLIQPTFIYGHPVEISPLA---KKNPDD----------PRFTD 401
Query: 385 ----LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLD 417
I G QR+ E L+ R +DE D +L+
Sbjct: 402 RFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDE-----D----FLE 452
Query: 418 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
YG P G G+G +RLV T +IRD + FP
Sbjct: 453 ALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFP 488
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 7e-07
Identities = 58/376 (15%), Positives = 101/376 (26%), Gaps = 132/376 (35%)
Query: 94 PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE----FLRTKA-HLRPRTNTF---- 144
PS ++ +E + +++ +D K VSR LR LRP N
Sbjct: 105 PSMMTRMYIE-QRDRL----YNDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 145 -GA-----VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSRE 198
G+ V L+Y + W++ T++
Sbjct: 159 LGSGKTWVALDV--CLSYKVQCKM-DFKIFWLN-----------LKNCNSPETVL----- 199
Query: 199 AAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA 258
+ +Y P + + + ++S +L ++ ++
Sbjct: 200 ---------------EMLQKLLYQIDPNWTSRSDHSSN---------IKLRIHSIQAELR 235
Query: 259 CATAYLQYVVRY-----ILDNC--KEDMDFFN-------TWIEKGIIDRLSTVAERDFVQ 304
L Y +L N + + FN T K + D LS
Sbjct: 236 ----RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT---H 288
Query: 305 LSYTDAIELLIKAKKKFEFLVKW-GCDLQSEHERYLTEEAFGGCPVIVS-------DYPK 356
+S L + K L+K+ C Q L E P +S D
Sbjct: 289 ISLDHHSMTLTPDEVK-SLLLKYLDCRPQD-----LPREVLTTNPRRLSIIAESIRDGLA 342
Query: 357 EIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE-----GRLDELKLNRDS 411
+ N D ++ +I S L LE D L + S
Sbjct: 343 TWD-NWKHVNCD------------KLTTIIESS-----LNVLEPAEYRKMFDRLSVFPPS 384
Query: 412 ----------YWWYLD 417
W+ +
Sbjct: 385 AHIPTILLSLIWFDVI 400
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 66/479 (13%), Positives = 135/479 (28%), Gaps = 134/479 (27%)
Query: 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDG------SCLSNMQCVMTSDAEGYDQVKSGLI 80
R+ + + + LR +V DG + ++ C + I
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLI----DGVLGSGKTWVALDVC----LSYKVQCKMDFKI 184
Query: 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIV-LVGKSDPSYPIQKKRVSREFLRTKAHLRP 139
W+ + + E + + L+ + DP++ + S LR + ++
Sbjct: 185 -----FWL------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQA 232
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASD--CEGAGEQFCVTTLIPSSR 197
N L + + ++ A + C + +TT +
Sbjct: 233 ELRRLLKSKPYENCLLVLLN--------VQ-NAKAWNAFNLSC-----KILLTT---RFK 275
Query: 198 EAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIE----PELA---- 249
+ + + A T L S T L ++ P
Sbjct: 276 QVTDF-LSAATTTHISLDHHSMTLT--------PDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 250 ------FADLKDDMACATAYLQYV----VRYILDNCKEDMD-------F-----F--NTW 285
A+ D ++V + I+++ ++ F F +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 286 IEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE-HERYLTEEAF 344
I ++ + + + +D + ++ K K + K + YL +
Sbjct: 387 IPTILLSLI-------WFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELK-- 436
Query: 345 GGCPV---------IVSDYPKEIKAFYMRQNDDGRTVAAMDM-LVPRIGELIGGSQREER 394
+ IV Y K F + D +D IG + + ER
Sbjct: 437 --VKLENEYALHRSIVDHY-NIPKTF----DSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 395 LE-----YLEGRLDELKLNRDSYWWY---------LDLRHYGS--VPHAGFGLGFERLV 437
+ +L+ R E K+ DS W L+ Y + +ERLV
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK---YERLV 545
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 54/276 (19%), Positives = 81/276 (29%), Gaps = 69/276 (25%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 276
V+ FR E + RH EF M+E A+ D + M ++ L
Sbjct: 275 VFEINRNFRNEGVSP-RHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQY 333
Query: 277 --EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKK-FEFLVKWGCDLQS 333
++D + I + A +D L + K+ + +
Sbjct: 334 QGRELDLAQPFHRLTITQAIQKYAPSYTDGQL-SDDAFLRSELKRLGVDVTQPAFLNAGI 392
Query: 334 EHERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPRIGE 384
L F P + DYP E+ A R++D I E
Sbjct: 393 GA---LQLALFEETAEAQLWEPTFIIDYPIEVSPLA---RESDTV----------AGITE 436
Query: 385 ----LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLD 417
I G Q + +E + D D Y+
Sbjct: 437 RFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDA-----D----YIR 487
Query: 418 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
YG P G G+G +RLV T IRD + FP
Sbjct: 488 ALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFP 523
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 60/271 (22%), Positives = 93/271 (34%), Gaps = 63/271 (23%)
Query: 220 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK--- 276
V+ FR E + RH EF M+E +A+AD D + + + + + +L K
Sbjct: 254 VFEINRNFRNEGISV-RHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTY 312
Query: 277 --EDMDFFNTWIEKGIIDRLSTVA-ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 333
DF + + + + + E D L DA + L + WG
Sbjct: 313 GEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAE-SIGITVEKSWGL---- 367
Query: 334 EHERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGEL- 385
+ E F P +++YP E+ R + + + R E
Sbjct: 368 ---GRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPE-------ITDRF-EFF 416
Query: 386 IGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDLRHYG 422
IGG Q E E + + DE D Y+ YG
Sbjct: 417 IGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDE-----D----YVTALEYG 467
Query: 423 SVPHAGFGLGFERLVQFATGVENIRDAIPFP 453
P AG G+G +R++ T IRD I FP
Sbjct: 468 LPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 461 | |||
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 100.0 | |
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 100.0 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 100.0 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 100.0 | |
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 100.0 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 100.0 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 100.0 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 100.0 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 100.0 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 100.0 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 100.0 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 100.0 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 100.0 | |
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 100.0 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 100.0 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 100.0 | |
| 12as_A | 330 | Asparagine synthetase; ligase, nitrogen fixation; | 99.9 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 99.79 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 99.63 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 99.45 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 99.24 | |
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 99.0 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 98.82 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 98.02 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 98.01 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 97.97 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 97.97 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 97.9 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 97.89 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 97.84 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 97.84 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 97.84 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 97.82 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 97.79 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 97.79 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 97.77 | |
| 3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.72 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 97.71 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 97.7 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 97.69 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 97.69 | |
| 4hvc_A | 519 | Bifunctional glutamate/proline--tRNA ligase; ligas | 97.68 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 97.67 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 97.63 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 97.63 | |
| 3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.62 | |
| 3qne_A | 485 | Seryl-tRNA synthetase, cytoplasmic; amino acid bio | 97.57 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 97.56 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 97.55 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 97.53 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 97.52 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 97.5 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 97.49 | |
| 3vbb_A | 522 | Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l | 97.41 | |
| 2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE | 97.41 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 97.4 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 97.39 | |
| 1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, liga | 97.17 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 97.04 | |
| 3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl- | 96.9 | |
| 3kdf_D | 132 | Replication protein A 32 kDa subunit; wheat GERM c | 96.78 | |
| 3kf6_A | 159 | Protein STN1; OB fold, chromosomal protein, DNA-bi | 96.77 | |
| 4gop_B | 136 | Putative uncharacterized protein; OB fold, ssDNA b | 96.74 | |
| 3ikl_A | 459 | DNA polymerase subunit gamma-2, mitochondrial; tra | 96.44 | |
| 3dm3_A | 105 | Replication factor A; probably plays AN essential | 96.42 | |
| 3e0e_A | 97 | Replication protein A; structural genomics, PSI-2, | 96.21 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 96.21 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 95.72 | |
| 2k50_A | 115 | Replication factor A related protein; uncharacteri | 95.71 | |
| 1g5h_A | 454 | Mitochondrial DNA polymerase accessory subunit; in | 95.51 | |
| 2pi2_A | 270 | Replication protein A 32 kDa subunit; FULL-length | 95.21 | |
| 1nnx_A | 109 | Protein YGIW; structural genomics, hypothetical pr | 95.16 | |
| 3au7_A | 402 | TIAS, putative uncharacterized protein; ATP hydrol | 95.11 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 94.86 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 94.72 | |
| 3kf8_A | 220 | Protein STN1; OB fold; 2.40A {Candida tropicalis m | 94.55 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 94.38 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 93.74 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 93.7 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 93.69 | |
| 2kbn_A | 109 | Conserved protein; nucleic acid binding protein, b | 93.6 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 93.56 | |
| 3kdf_A | 121 | Replication protein A 14 kDa subunit; wheat GERM c | 93.45 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 92.86 | |
| 1ynx_A | 114 | Replication factor-A protein 1; canonical OB fold, | 92.82 | |
| 2k75_A | 106 | Uncharacterized protein TA0387; closed beta barrel | 92.77 | |
| 2pi2_E | 142 | Replication protein A 14 kDa subunit; FULL-length | 92.01 | |
| 1o7i_A | 119 | SSB, SSO2364, single stranded DNA binding protein; | 91.95 | |
| 4gop_A | 114 | Putative uncharacterized protein; OB fold, ssDNA b | 91.91 | |
| 3fhw_A | 115 | Primosomal replication protein N; PRIB BPR162 X-RA | 91.52 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 90.43 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 89.18 | |
| 1sr3_A | 136 | APO-CCME; OB fold, beta barrel, flexible C-termina | 87.79 | |
| 1j6q_A | 136 | Cytochrome C maturation protein E; all-beta protei | 86.59 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 85.75 | |
| 2hpi_A | 1220 | DNA polymerase III alpha subunit; POL-beta-like nu | 85.53 | |
| 3k8a_A | 103 | Putative primosomal replication protein; beta-barr | 83.98 | |
| 1jmc_A | 246 | Protein (replication protein A (RPA)); human ssDNA | 82.85 | |
| 3f1z_A | 133 | Putative nucleic acid-binding lipoprotein; YP_0013 | 82.1 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 80.8 |
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-103 Score=810.71 Aligned_cols=425 Identities=28% Similarity=0.449 Sum_probs=380.1
Q ss_pred cceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc---chhhhhhcCCCCCcE
Q 012529 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKSGLITTGAS 85 (461)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~---~~~~~~~~~l~~g~~ 85 (461)
.|+|+|++|.+. +.|++|+|+|||+++|.+||++|++|||++|. ||||++++.. .|+.++. |+.||+
T Consensus 2 ~rt~~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~ 71 (438)
T 3nem_A 2 YRTHYSSEITEE------LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPK--LRSEDV 71 (438)
T ss_dssp CCSCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGG--CCTTCE
T ss_pred ceEEEHHHcchh------cCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 478999999874 67999999999999999999999999999975 9999998652 3666777 999999
Q ss_pred EEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCccc---CChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHh
Q 012529 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFF 162 (461)
Q Consensus 86 V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~---~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff 162 (461)
|.|+|+|.++++.++++||++++++|||+|..++|++.+. ++.++++++||||+|++.++++|++||++++++|+||
T Consensus 72 V~V~G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~ 151 (438)
T 3nem_A 72 VAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFF 151 (438)
T ss_dssp EEEEEEEEECTTSTTSEEEEEEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCCCCcEEEEEEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887779999999999999998779988664 6888999999999999999999999999999999999
Q ss_pred hhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccc
Q 012529 163 QENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFW 242 (461)
Q Consensus 163 ~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFt 242 (461)
.++||+||+||+|+++++||+++.|.+++++. ..+|.+||.+.++.+.. +|++||||||||||||+++++|||||||
T Consensus 152 ~~~gF~EVeTPiL~~~~~eg~~~~f~~~~~~~-~~yL~~Spql~~q~l~~--~g~~rvf~i~~~FR~E~~~t~RH~pEFt 228 (438)
T 3nem_A 152 HENGFIEIHTPKIIATATEGGTELFPMKYFEE-DAFLAQSPQLYKQIMMA--SGLDRVYEIAPIFRAEEHNTTRHLNEAW 228 (438)
T ss_dssp HHTTCEECCCCSEESSCSSCSSSCCEEEETTE-EEEECSCSHHHHHHGGG--TTCCEEEEEEEEECCCSSCCTTCCSEEE
T ss_pred HHCCcEEEeCCEEecCCCCCCccceeEeeCCc-cEEEecChHHHHHHHHh--cCCCceEEEcceEECCCCCCccccccee
Confidence 99999999999999999999999999998875 46788888655443332 3699999999999999999999999999
Q ss_pred cceeeeccCC-HHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccc
Q 012529 243 MIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKF 321 (461)
Q Consensus 243 mlE~e~a~~d-~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~ 321 (461)
|||||++|.| ++|+|+++|+||+++++.+.+.++.++++++.. + ..+..||+|+||.||+++|++.|.+
T Consensus 229 ~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~--------l-~~~~~pf~rity~eai~~l~~~g~~- 298 (438)
T 3nem_A 229 SIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFE--------L-EEPKLPFPRVSYDKALEILGDLGKE- 298 (438)
T ss_dssp EEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCC--------C-CCCCSSCCEEEHHHHHHHHHHTTCC-
T ss_pred eeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccc--------c-ccCCCCceEEEHHHHHHHHHHcCCC-
Confidence 9999999999 999999999999999999998887666655431 1 1245689999999999999988754
Q ss_pred cccccccccCChHhhhchhhhcc---cCCCeeeeeCCccCCccccccCC-CccceeccccccCCceeeechhhhcccHHH
Q 012529 322 EFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEY 397 (461)
Q Consensus 322 ~~~~~~g~~l~~~~e~~l~e~~~---~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~ 397 (461)
+.||.+++..+|++|.+.+. ..+|+||+|||.+++|||++.++ |+++++|||||++| +||+||++|+||++.
T Consensus 299 ---~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p~~~~rfdL~~~G-~Ei~nG~~el~d~~~ 374 (438)
T 3nem_A 299 ---IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRG-VEISSGGQREHRHDI 374 (438)
T ss_dssp ---CCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTSTTBBSEEEEEETT-EEEEEEEEBCCCHHH
T ss_pred ---CCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCccccccCCCCCCceEEEEEEECC-EEEEeCeeecCCHHH
Confidence 46899999999998876542 13899999999999999887765 45689999999999 699999999999999
Q ss_pred HHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 398 LEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 398 ~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
|.++++++|++++.++|||+|++||+|||||||||||||+|++||.+|||||++|||+++||.
T Consensus 375 l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~~~Irdvi~FPr~~~rl~ 437 (438)
T 3nem_A 375 LVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLT 437 (438)
T ss_dssp HHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCCSSCCC
T ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCceEEEEhHHHHHHHHhCCCcHHHcccCCCCccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999984
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-101 Score=798.96 Aligned_cols=424 Identities=28% Similarity=0.488 Sum_probs=361.1
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCccCccEEEEEeCCC-cchhhhhhcCCCCCcEEEE
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWI 88 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~-~~~Fi~l~D~s~~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~v 88 (461)
++.|+++. ++.|++|+|+|||+++|.+| +++|++|||++|. ||||++++. .....+.. |+.||+|.|
T Consensus 19 ~~~i~~~~-------~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~--l~~g~~V~V 87 (456)
T 3m4p_A 19 VCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFGKELCEPEKVKL--LTRECSLEI 87 (456)
T ss_dssp CEECCSTT-------CCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCE--EEEEEESTTTTCHHHHTT--CCTTCEEEE
T ss_pred EEEhhhhh-------hcCCCEEEEEEEEEEEecCCCceEEEEEEeCCcc--EEEEEecccchhhHHhhc--CCCccEEEE
Confidence 36788883 37899999999999999995 6999999999975 999998743 22223456 999999999
Q ss_pred EeeEeecCCCC--------ccEEEEEeEEEEeccCCCCCCC-CcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHH
Q 012529 89 QGNVVPSQGSK--------QKVELKVNKIVLVGKSDPSYPI-QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATH 159 (461)
Q Consensus 89 ~G~~~~~~~~~--------~~~el~~~~i~vl~~~~~~~Pl-~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR 159 (461)
+|+|++++.++ +++||+|++++|||+|..++|- ..+.++.++++++||||+|++.++++|++||++++++|
T Consensus 88 ~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~iR 167 (456)
T 3m4p_A 88 TGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFR 167 (456)
T ss_dssp EEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred EeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHHH
Confidence 99999887532 6899999999999999743321 12356788899999999999999999999999999999
Q ss_pred HHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCcc
Q 012529 160 KFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLA 239 (461)
Q Consensus 160 ~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~ 239 (461)
+||.++||+||+||+|+++++||++++|.+++++. ..+|.+||.+.+..+. ++++||||||||||||+++|+||||
T Consensus 168 ~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~~~~~~-~~~L~~SpqL~lq~l~---~g~~rVyeig~~FR~E~~~t~rH~p 243 (456)
T 3m4p_A 168 KYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQYFNE-PAYLTQSSQLYLESVI---ASLGKSFCMLSSYRAEQSRTVRHLA 243 (456)
T ss_dssp HHHHHTTCEECCCCSEEC------CCCCEEEETTE-EEEECSCCHHHHHTTH---HHHSSEEEEEEEECCCSCCCSSCCS
T ss_pred HHHHhCCCEEEeCCeeecCCCCCccccccccccCC-CcccccCHHHHHHHHH---hccCcEEEEEhheecCCCCCCcchH
Confidence 99999999999999999999999999999999876 4678888765544333 2599999999999999999999999
Q ss_pred ccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcc
Q 012529 240 EFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKK 319 (461)
Q Consensus 240 EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~ 319 (461)
|||||||||+|.|++|+|+++|+||+++++.+.+.+...+..+.. + + ..+..||+|+||.||+++|++.|+
T Consensus 244 EFtmlE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~----~----~-~~~~~pf~rity~eAi~~l~~~g~ 314 (456)
T 3m4p_A 244 EYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNP----H----L-KLPTRPFKRMTYADAIKYCNDHGI 314 (456)
T ss_dssp EEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----T----C-CCCCSSCEEEEHHHHHHHHHHHTC
T ss_pred HHHHhHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCc----c----c-ccCCCCCeEeeHHHHHHHHHHcCC
Confidence 999999999999999999999999999999998765433322211 0 1 123568999999999999999886
Q ss_pred ccc-ccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCC-CccceeccccccCCceeeechhhhcccHHH
Q 012529 320 KFE-FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEY 397 (461)
Q Consensus 320 ~~~-~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~ 397 (461)
+.+ ....||.+++.++|+++.+.+ . +|+||+|||.+++|||++.++ |+.+++|||||++|+|||+||++|+||+++
T Consensus 315 ~~~~~~~~~g~~l~~~~e~~l~~~~-~-~P~fv~~yP~~~~pfy~k~~~~dp~~~~rfdL~~~G~gEi~~G~~r~~d~~~ 392 (456)
T 3m4p_A 315 LNKDKPFEYGEDISEKPERQMTDEI-G-CPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDE 392 (456)
T ss_dssp CSSSSCCCTTCCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCEETTEEEEECEEEEEETTTEEEEEEEEBCCCHHH
T ss_pred CccccCcchHHHHHHHHHHHHHHHh-C-ceEEEECCCchhCccccccCCCCCCeeEEEEEEeCCceEEccceeecCCHHH
Confidence 543 235799999999999998865 4 799999999999999987665 446789999999999999999999999999
Q ss_pred HHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 398 LEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 398 ~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
|.+++++.|++++.++|||++++||+|||||||||||||+|++||++|||||++|||+++||.
T Consensus 393 l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Irdvi~FPr~~~r~~ 455 (456)
T 3m4p_A 393 LMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCE 455 (456)
T ss_dssp HHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCBBTTBCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHHHeeccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999984
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-99 Score=780.54 Aligned_cols=422 Identities=28% Similarity=0.435 Sum_probs=377.7
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~ 89 (461)
++++|++|... +.|++|+|+|||+++|.+|+++|++|||++|. ||||++++...|+.++. |+.||+|.|+
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~--l~~~~~v~v~ 72 (429)
T 1wyd_A 3 RSHFIADVTPE------YDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKNSSAFGISQE--LTQESVIQVR 72 (429)
T ss_dssp CSSCTTTCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCChHHHHHHHh--CCCCCEEEEE
Confidence 56788898763 68999999999999999999999999999975 99999876555666777 9999999999
Q ss_pred eeEeecCCCCccEEEEEeEEEEeccCCCCCCCCccc---CChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCC
Q 012529 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (461)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~---~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~g 166 (461)
|+|.+++++++++||+|++++|||+|..++|++.++ ++.++++++||||+|++.+++++++||++++++|+||.++|
T Consensus 73 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~~g 152 (429)
T 1wyd_A 73 GIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEG 152 (429)
T ss_dssp EEEEECSSSGGGEEEEEEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCCCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999988889999999999999997679988775 78899999999999999999999999999999999999999
Q ss_pred cEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCcccccccee
Q 012529 167 FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEP 246 (461)
Q Consensus 167 F~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~ 246 (461)
|+||+||+|+++++||++++|.+++++. ..+|.+||...+.. +.++++|||+||||||||++++.||+|||||||+
T Consensus 153 F~eV~TP~l~~~~~e~~~~~f~~~~~~~-~~~L~~Spql~~~~---~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~ 228 (429)
T 1wyd_A 153 FIEIFTPKIIASATEGGAQLFPVIYFGK-EAFLAQSPQLYKEL---MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDV 228 (429)
T ss_dssp CEECCCCSEESSCSSTTCCCCEEEETTE-EEEECSCCHHHHHH---HHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEE
T ss_pred CEEEECCEEEeeCCCCCceeEEEecCCc-eEEecCCcHHHHHH---HHhCcCceEEEcccccccCCccccccceeeEeee
Confidence 9999999999999999999999988775 46778887654322 2235899999999999999998999999999999
Q ss_pred eeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccc
Q 012529 247 ELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVK 326 (461)
Q Consensus 247 e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~ 326 (461)
|++|.|++|+|+++|++++++++.+.+.+..++++.+... . .++.||+++||.||++++++.|.+ ..
T Consensus 229 e~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~--------~-~l~~pf~rity~eA~~~~~~~g~~----~~ 295 (429)
T 1wyd_A 229 EMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEP--------P-EVKIPIKRLKYTEAIEILRSKGYN----IK 295 (429)
T ss_dssp EEETCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCC--------C-CCCSSCEEEEHHHHHHHHHHSSCC----CC
T ss_pred eecCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhccccc--------c-cCCCCccEEEHHHHHHHHHhcCCC----cc
Confidence 9999999999999999999999999988777776554311 1 124689999999999999877643 46
Q ss_pred ccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCC-ccceeccccccCCceeeechhhhcccHHHHHHHHHHc
Q 012529 327 WGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 405 (461)
Q Consensus 327 ~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~-~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~ 405 (461)
||.++...+|++|.+.+.. +|+||+|||.+++|||++.+++ +.++++||||++|+ ||+|||+|+||++.|.++++++
T Consensus 296 ~~~~l~~~~e~~l~~~~~~-~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~G~-Ei~~G~~r~~d~~~q~~rf~~~ 373 (429)
T 1wyd_A 296 FGDDIGTPELRILNEELKE-DLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFL-EIVSGSTRNHKREVLEEALKKK 373 (429)
T ss_dssp TTSCCCHHHHHHHHHHHCC-SEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHT
T ss_pred cCcccCcHHHHHHHHHhcc-CCEEEecCChhhChhhCCcCCCCCCeEEEEEEEECCE-EEEeCeeeeCCHHHHHHHHHHc
Confidence 8999999999999876543 6999999999999998877654 45899999999998 9999999999999999999999
Q ss_pred CCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 406 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 406 ~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
|++++.++|||+|++||+|||||||||+|||+|++||.+||||||+|||++++|.
T Consensus 374 g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~~ 428 (429)
T 1wyd_A 374 GLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRLT 428 (429)
T ss_dssp TCCGGGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCCCCGGGTSSSCCBTTBCC
T ss_pred CCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEecCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999986
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-99 Score=781.40 Aligned_cols=414 Identities=27% Similarity=0.516 Sum_probs=355.5
Q ss_pred CCCCEEEEEEEEeeeecC-CCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCCCCcEEEEEeeEeecC---CCCcc
Q 012529 27 RVGLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQGNVVPSQ---GSKQK 101 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~-~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~~g~~V~v~G~~~~~~---~~~~~ 101 (461)
+.|++|+|+|||+++|.+ |+++|++|||++|. ||||++++.. .|+.. . |+.||+|.|+|+|++++ +++++
T Consensus 9 ~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~-~--l~~~~~v~v~G~v~~~~~~~~~~g~ 83 (435)
T 2xgt_A 9 HRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDAL-T--VNTECTVEIYGAIKEVPEGKEAPNG 83 (435)
T ss_dssp GTTSEEEEEEEEEEEEECTTSEEEEEEECSSCE--EEEEEEGGGGSSHHHH-H--CCTTCEEEEEEEEEECC------TT
T ss_pred cCCCEEEEEEEEEEecccCCCcEEEEEEECCce--EEEEECCcchhHHHHh-c--CCCCCEEEEEEEEEecCCCcCCCCc
Confidence 679999999999999999 57999999999985 9999985432 34433 5 99999999999999977 44578
Q ss_pred EEEEEeEEEEeccCCC--CCCCCcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC
Q 012529 102 VELKVNKIVLVGKSDP--SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASD 179 (461)
Q Consensus 102 ~el~~~~i~vl~~~~~--~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~ 179 (461)
+||++++++|||++.+ .+|++.+.++.++++++||||+|++.++++|++||++++++|+||.++||+||+||+|++++
T Consensus 84 ~El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~ 163 (435)
T 2xgt_A 84 HELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQ 163 (435)
T ss_dssp EEEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCC
T ss_pred EEEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEeecc
Confidence 9999999999998643 26777777888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHH
Q 012529 180 CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMAC 259 (461)
Q Consensus 180 ~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~ 259 (461)
+||++++|.+++++. ..+|.+||.+.+..+. ++++||||||||||||+++++|||||||||||||+|+|++|+|++
T Consensus 164 ~eG~~~~F~~~~~g~-~~~L~~SpqLylq~l~---~g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~ 239 (435)
T 2xgt_A 164 VEGGSTLFNLDYFGE-QSFLTQSSQLYLETCI---PTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEK 239 (435)
T ss_dssp SSCTTSCCEEEETTE-EEEECSCSHHHHHHHH---HHHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHH
T ss_pred CCCchhceeeccCCc-ccccCCChHHHHHHhh---hccCceEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHH
Confidence 999999999998875 4567788764433222 259999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcch--hccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccc--cccccccCChHh
Q 012529 260 ATAYLQYVVRYILDNCKED--MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF--LVKWGCDLQSEH 335 (461)
Q Consensus 260 ~e~li~~i~~~~~~~~~~~--l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~--~~~~g~~l~~~~ 335 (461)
+|+||+++++.+.+.+..+ ++.+.. .+ .....||+|+||.||++++++.+...+. ...||.++...+
T Consensus 240 ~E~li~~~~~~v~~~~~~~~~~~~~~~--------~~-~~~~~pf~rity~ea~~~~~~~~~~~~~~~~~~~g~~l~~~~ 310 (435)
T 2xgt_A 240 IEELVCDTVDRLLADEEAKKLLEHINP--------KF-QPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAA 310 (435)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHST--------TC-CCCCSSCEEEEHHHHHHHHHHTTCBCTTSCBCCTTSCCCHHH
T ss_pred HHHHHHHHHHHHhccccchhhhhhccc--------cc-cccCCCceEEEHHHHHHHHHhcCCCcccccccchhhHHHHHH
Confidence 9999999999987654211 111110 00 0123589999999999999887654322 257899999999
Q ss_pred hhchhhhcccCCCeeeeeCCccCCccccccCC-CccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHH
Q 012529 336 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWW 414 (461)
Q Consensus 336 e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~ 414 (461)
|++|.+.+ . +|+||+|||.+++|||++.++ |+..+++|||+++|+|||+|||+|+||+++|.+++++.|+++++++|
T Consensus 311 e~~l~~~~-~-~p~fv~d~P~~~~~f~a~~~~~~p~~~~~fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~~~~ 388 (435)
T 2xgt_A 311 ERFMTDTI-N-KPILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYW 388 (435)
T ss_dssp HHHHHHHH-T-SCEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCGGGHH
T ss_pred HHHHHHhc-C-CcEEEECCChhhCcccCCCCCCCcCeEEEEEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHHHHHH
Confidence 99998765 3 799999999999999988765 45678999999999889999999999999999999999999999999
Q ss_pred HHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 415 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 415 yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
||+|++||+|||||||||+|||+|++||.+||||||+|||++++|.
T Consensus 389 yl~a~~yG~pPhgG~glGiDRLvmll~g~~~Irdvi~FPr~~~~~~ 434 (435)
T 2xgt_A 389 YLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCV 434 (435)
T ss_dssp HHHHHHSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCBTTBCC
T ss_pred HHHHHhCCCCCCceEEEhHHHHHHHHcCCCcHHhEecccCCcCCCC
Confidence 9999999999999999999999999999999999999999999985
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-99 Score=788.29 Aligned_cols=427 Identities=25% Similarity=0.363 Sum_probs=349.4
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC----cchhhhhhcCCCCCcE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKSGLITTGAS 85 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~----~~~~~~~~~~l~~g~~ 85 (461)
.++.|++|... +.|++|+|+|||+++|.+|+++|++|||++| .||||++++. ..++.++. |+.||+
T Consensus 49 ~~~~i~~l~~~------~~g~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~~--l~~es~ 118 (548)
T 3i7f_A 49 KYTEIEELVPA------MAEKTVTIRARVQAVRGKGNMVFLFLRKGIY--TCQALVMKSETISKEFVQFCQK--ISAESI 118 (548)
T ss_dssp CBCCGGGCSGG------GTTCEEEEEEEEEEEEECSSEEEEEEEETTE--EEEEEEECSSSSCHHHHHHHHT--CCTTEE
T ss_pred ceEEhhhcchh------cCCCEEEEEEEEEEEecCCCeEEEEEEECCe--eEEEEEECCCccCHHHHHHHhC--CCCCCE
Confidence 44677777753 7899999999999999999999999999997 5999998742 12334567 999999
Q ss_pred EEEEeeEeecCC-----CCccEEEEEeEEEEeccCCCCCCCCccc-----------------------------------
Q 012529 86 IWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR----------------------------------- 125 (461)
Q Consensus 86 V~v~G~~~~~~~-----~~~~~el~~~~i~vl~~~~~~~Pl~~~~----------------------------------- 125 (461)
|.|+|+|++++. +++++||++++|+|||+|..++|++.++
T Consensus 119 V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (548)
T 3i7f_A 119 CDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLT 198 (548)
T ss_dssp EEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-----------------
T ss_pred EEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhccccccccccccccccccccccccccccccccccc
Confidence 999999999874 3578999999999999998778987421
Q ss_pred -----------------------CChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCC
Q 012529 126 -----------------------VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182 (461)
Q Consensus 126 -----------------------~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg 182 (461)
.+.++..++||||+|++.++++|++||++++++|+||.++||+||+||+|++++|||
T Consensus 199 ~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~eg 278 (548)
T 3i7f_A 199 KRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEG 278 (548)
T ss_dssp --------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC------
T ss_pred cccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCC
Confidence 234555589999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHH
Q 012529 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACAT 261 (461)
Q Consensus 183 ~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-d~~dlm~~~e 261 (461)
++++|.|+|++. ..+|.+||.+.++.+. .+|++||||||||||||+++|+|||||||||||||+|. |++++|+++|
T Consensus 279 ga~~F~v~~~~~-~~yL~~Spql~~k~ll--~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E 355 (548)
T 3i7f_A 279 GSNIFEVKYFDR-KAYLAQSPQLYKQMAI--MGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVME 355 (548)
T ss_dssp --------------CCBCSCTHHHHHHHH--TTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHH
T ss_pred CcceeEEecCCC-ceEeccCHHHHHHHHH--hcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHH
Confidence 999999999876 4678888765443332 34699999999999999999999999999999999998 7999999999
Q ss_pred HHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhh
Q 012529 262 AYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE 341 (461)
Q Consensus 262 ~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e 341 (461)
+||+++++.+.+.+..+++.+....+.. .+. . .||+++||.||+++|++.|.+ ..|+.+++..+|++|.+
T Consensus 356 ~li~~i~~~~~~~~~~el~~~~~~~~~~---~~~--~-~pf~rit~~eai~~l~~~g~~----~~~~~dl~~~~e~~l~~ 425 (548)
T 3i7f_A 356 KLFTFIFDEIPKRFPDELKVIRKQYPFE---DLI--Y-RPFLRLTYKEAIEMLRASGET----IGDYDDFTTPQEVKLGE 425 (548)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHSCCC---CCC--C-CSCEEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhcCCcc---ccc--c-CCcceeEHHHHHHHHHHcCCC----CCCccccchHHHHHHHH
Confidence 9999999999888877665543322110 111 1 689999999999999998865 35888999999998764
Q ss_pred h---cccCCCeeeeeCCccCCccccccCC-CccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHH
Q 012529 342 E---AFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLD 417 (461)
Q Consensus 342 ~---~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~ 417 (461)
. .+...++||+|||.+++|||++.++ |+.+++|||||++| +||+||++|+||++.|++++++.|++++.++|||+
T Consensus 426 ~i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i~G-~Ei~nG~~rl~Dp~~~~~R~~~~G~d~~~~e~yl~ 504 (548)
T 3i7f_A 426 LIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIE 504 (548)
T ss_dssp HHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETT-EEEEEEEEECCCHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred HHHHHcCCCeEEEecCccccCchhhccCCCCCCeEEEEEEEECC-EEEeeCeeecCCHHHHHHHHHHcCCChHHHHHHHH
Confidence 2 2332456789999999999987654 56788999999999 69999999999999999999999999999999999
Q ss_pred HhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 418 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 418 a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
|++||+|||||||||||||+|++||.+|||||++|||+++||.
T Consensus 505 al~yG~PPhgG~GlGiDRLvMlltg~~nIRdVi~FPR~p~rl~ 547 (548)
T 3i7f_A 505 SFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIRLN 547 (548)
T ss_dssp TTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTTBCC
T ss_pred HHhCCCCCceEEEEcHHHHHHHHhCCccHHHhhcCCCCCCCCC
Confidence 9999999999999999999999999999999999999999984
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-98 Score=769.41 Aligned_cols=424 Identities=34% Similarity=0.581 Sum_probs=378.4
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhhhhhcCCCCCcEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~~~~~~l~~g~~V 86 (461)
++++|++|... +.|++|+|+|||+++|.+||++|++|||++|. ||||++++. ..|+.++. |+.||+|
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~v 72 (434)
T 1x54_A 3 EKVYCQEVKPE------LDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKK--LGRESSV 72 (434)
T ss_dssp CCCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECHHHHCHHHHHHHHT--CCTTCEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEECCcCCHHHHHHHhc--CCCCCEE
Confidence 57889999763 68999999999999999999999999999975 999997542 23666677 9999999
Q ss_pred EEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCC--CcccCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 012529 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI--QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (461)
Q Consensus 87 ~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl--~~~~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~ 164 (461)
.|+|+|.+++++++++||+|++++|||+| .++|+ +++.++.++++++||||+|++.+++++++||.+++++|+||.+
T Consensus 73 ~v~G~v~~~~~~~~~~el~~~~~~vl~~~-~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~ 151 (434)
T 1x54_A 73 IVEGIVKADERAPGGAEVHVEKLEVIQAV-SEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLK 151 (434)
T ss_dssp EEEEEEEECTTSGGGEEEEEEEEEEEECC-SCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCccEEEEEeEEEEeecC-CCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999 66998 7777899999999999999999999999999999999999999
Q ss_pred CCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccc
Q 012529 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMI 244 (461)
Q Consensus 165 ~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtml 244 (461)
+||+||+||+|+.+++||++++|.+++++. ..+|.+||...+.. +..+++|||+||||||||++++.||+||||||
T Consensus 152 ~gF~eVeTP~l~~~~~e~~~~~f~~~~~~~-~~~Lr~Spel~~~~---~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtql 227 (434)
T 1x54_A 152 DGWHEVFPPILVTGAVEGGATLFKLKYFDK-YAYLSQSAQLYLEA---AIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHL 227 (434)
T ss_dssp TTCEECCCCSEESCCSSCGGGCCEEEETTE-EEEECSCSHHHHHH---HHHHHSEEEEEEEEECCCCCCCSSCCSEEEEE
T ss_pred CCCEEEeCcEEEeecCCCCceeEEEeecCC-cEEeccChHHHHHH---HhcCccceEEEecceecCCCCCcccccEEEEe
Confidence 999999999999999999999999988765 46677887654322 22358999999999999999989999999999
Q ss_pred eeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccc
Q 012529 245 EPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL 324 (461)
Q Consensus 245 E~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~ 324 (461)
|+|++|.|++|+|+++|++++++++.+.+.+..++++++...+ .++. ++.||+++||.||++++++.|.+
T Consensus 228 e~e~~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~-----~~~~-~~~pf~rity~ea~~~~~~~g~~---- 297 (434)
T 1x54_A 228 ELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLT-----TLKN-TEPPFPRISYDEAIDILQSKGVN---- 297 (434)
T ss_dssp EEEEETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCH-----HHHT-CCSSCCEEEHHHHHHHHHHTTCC----
T ss_pred eEEEcCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCcccc-----cccc-cCCCCcEEEHHHHHHHHHhcCCC----
Confidence 9999999999999999999999999999888878877654321 1211 35699999999999999887743
Q ss_pred ccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCC-ccceeccccccC-CceeeechhhhcccHHHHHHHH
Q 012529 325 VKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRL 402 (461)
Q Consensus 325 ~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~-~~~~~~fdl~~~-G~~Ei~~g~~r~~~~~~~~~~~ 402 (461)
..||.+++.++|++|.+.+. +|+||+|||.+++|||++.+++ +.++++|||+++ |+|||+|||+|+||++.|.+++
T Consensus 298 ~~~~~dl~~~~e~~l~~~~~--~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf 375 (434)
T 1x54_A 298 VEWGDDLGADEERVLTEEFD--RPFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRI 375 (434)
T ss_dssp CCTTCCCCHHHHHHHHTTCS--SCEEEEEEEGGGSCTTBCBCSSCTTEEEEEEEEETTTTEEEEEEEEBCCCHHHHHHHH
T ss_pred cccCCccChHHHHHHHHHhC--CcEEEEcCChhhCcccCCcCCCCCCeEEEEEEEECCCceEEecCeEeeCCHHHHHHHH
Confidence 46899999999999987653 6999999999999998876654 458999999999 9999999999999999999999
Q ss_pred HHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 403 DELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 403 ~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
+++|++++.++|||+|++||+|||||||||+|||+|++||.+||||||+||+++++|.
T Consensus 376 ~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~~ 433 (434)
T 1x54_A 376 LEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARLY 433 (434)
T ss_dssp HHTTCCGGGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTTCSSGGGGSSSCCBTTBCC
T ss_pred HHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEEccCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999985
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-98 Score=768.44 Aligned_cols=411 Identities=25% Similarity=0.386 Sum_probs=313.9
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCC-CCcEEEEE
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQ 89 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~-~g~~V~v~ 89 (461)
+|+|++|. . +.|++|+|+|||+++|.+|+++|++|||++|. ||||+++ +. |+ .||+|.|+
T Consensus 2 ~~~~~~l~-~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~--------~~--l~~~~~~v~v~ 62 (422)
T 1n9w_A 2 RVLVRDLK-A------HVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGG--------LK--LPLPESALRVR 62 (422)
T ss_dssp BCCGGGGG-G------CTTSEEEEEEEEEEEEECSSEEEEEEEETTEE--EEEEEES--------CC--CCCTTCEEEEE
T ss_pred eEEHHHHH-h------cCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEEc--------cc--cCCCCCEEEEE
Confidence 46788887 3 67999999999999999999999999999975 9999985 24 99 99999999
Q ss_pred eeEeecCCCCccEEEEEeEEEEeccCCCCCCCCccc----CChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhC
Q 012529 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR----VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (461)
Q Consensus 90 G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~----~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~ 165 (461)
|+|.+++++++++||+|++++|||+|..++|++.++ ++.++++++||||+|++.+++++++||++++++|+||.++
T Consensus 63 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~ 142 (422)
T 1n9w_A 63 GLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQ 142 (422)
T ss_dssp EEEEECTTSTTSEEEEEEEEEEEECCCSCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999988889999999999999997779988776 7888888999999999999999999999999999999999
Q ss_pred CcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccce
Q 012529 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIE 245 (461)
Q Consensus 166 gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE 245 (461)
||+||+||+|+++++||++++|.+++++. ..+|.+||...+..+. .+++|||+||||||||++++.||+|||||||
T Consensus 143 gF~EV~TPil~~~~~e~~~~~f~~~~~g~-~~~L~~Spel~~~~l~---~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle 218 (422)
T 1n9w_A 143 DFTEIFTPKVVRAGAEGGSGLFGVDYFEK-RAYLAQSPQLYKQIMV---GVFERVYEVAPVWRMEEHHTSRHLNEYLSLD 218 (422)
T ss_dssp TCEECCCC-----------------------------CHHHHHHHH---HHHSEEEEEEEC-------------CCEEEE
T ss_pred CCEEEECCEEEEeCCCCCceeEEEeeCCC-cEEeeeCHHHHHHHHh---hCCCceeEEeCceECCCCCCCcccceeEEee
Confidence 99999999999999999999999987765 4567778765432222 2589999999999999999889999999999
Q ss_pred eeeccC-CHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccc
Q 012529 246 PELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL 324 (461)
Q Consensus 246 ~e~a~~-d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~ 324 (461)
+|++|. |++|+|+++|+|++++++.+.+.++.++++++... . ....||+++||.||++++++.| .
T Consensus 219 ~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~--------~-~~~~pf~rity~eA~~~~~~~~-----~ 284 (422)
T 1n9w_A 219 VEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATW--------P-SFPQDIPRLTHAEAKRILKEEL-----G 284 (422)
T ss_dssp EEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCC--------C-CCSSSCCEEEHHHHHHHHHHTS-----C
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCccc--------c-ccCCCcceeEHHHHHHHHHhcC-----C
Confidence 999999 99999999999999999999888877776654311 0 1115899999999999998766 2
Q ss_pred ccccccCChHhhhchhhhcc---cCCCeeeeeCCccCCccccccCCCccceeccccccCCceeeechhhhcccHHHHHHH
Q 012529 325 VKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGR 401 (461)
Q Consensus 325 ~~~g~~l~~~~e~~l~e~~~---~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~ 401 (461)
..||.++...+|++|.+.+. ..+|+||+|||..++|||++.++| .++++|||+++|+ ||+|||+|+||++.|+++
T Consensus 285 ~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~~d-~~~~~fDL~~~G~-Ei~~G~~r~~d~~~q~~r 362 (422)
T 1n9w_A 285 YPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEED-GTTRSFDLLFRGL-EITSGGQRIHRYEELLES 362 (422)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTT-SBBSEEEEEETTE-EEEEEEEBCCCHHHHHHH
T ss_pred cccccccCcHHHHHHHHHHHhhhCCceEEEECCChhhCcCcCCCCCC-CEEEEEEEEECCE-EEEeCEeecCCHHHHHHH
Confidence 56898999999988875432 126999999999999999988777 7889999999998 999999999999999999
Q ss_pred HHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 402 LDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 402 ~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
++++|++++.++|||+|++||+|||||||||+|||+|++||.+||||||+|||++++|.
T Consensus 363 f~~~g~~~~~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdvi~FPr~~~~~~ 421 (422)
T 1n9w_A 363 LKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRDRHRLT 421 (422)
T ss_dssp HHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCSCC-------
T ss_pred HHHcCCCHHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhEEecCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999985
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-95 Score=762.02 Aligned_cols=431 Identities=24% Similarity=0.387 Sum_probs=363.6
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCe-EEEEEEcCccCccEEEEEeCCC------cchhhhhhcCCCC
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSV-TFIEVNDGSCLSNMQCVMTSDA------EGYDQVKSGLITT 82 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~-~Fi~l~D~s~~~~iQvv~~~~~------~~~~~~~~~~l~~ 82 (461)
.++.|++|... ++.|++|+|+|||+++|.+|++ +|++|||++|. ||||++++. ..++.++. |+.
T Consensus 22 ~~~~~~~l~~~-----~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~~~~~~--l~~ 92 (487)
T 1eov_A 22 KRVKFVDLDEA-----KDSDKEVLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKANKEGTISKNMVKWAGS--LNL 92 (487)
T ss_dssp CCCCGGGCCTT-----TTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEE--EEEEEECCSSSSSCHHHHHHHTT--CCT
T ss_pred ceeEHHHhccc-----ccCCCEEEEEEEEEEeeccCCccEEEEEEECCcc--EEEEEeccccccccHHHHHHHhc--CCC
Confidence 34567777642 2679999999999999999997 99999999974 999998651 12445666 999
Q ss_pred CcEEEEEeeEeecCC-----CCccEEEEEeEEEEeccCCCCCCCCccc---------------CChhhhhcCccccCCCH
Q 012529 83 GASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR---------------VSREFLRTKAHLRPRTN 142 (461)
Q Consensus 83 g~~V~v~G~~~~~~~-----~~~~~el~~~~i~vl~~~~~~~Pl~~~~---------------~~~~~~r~~r~l~~R~~ 142 (461)
||+|.|+|+|.+++. +++++||+|++++|||+|..++|++.++ .+.++.+++||||+|++
T Consensus 93 e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~~ 172 (487)
T 1eov_A 93 ESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTV 172 (487)
T ss_dssp TCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTSH
T ss_pred CCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCCH
Confidence 999999999999984 3468999999999999998778986542 45677779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccccCcCcceeEE
Q 012529 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYT 222 (461)
Q Consensus 143 ~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfe 222 (461)
.+++++++||.|++++|+||.++||+||+||+|+++++|+++++|.+++++. ..+|.+||++.++.+. .++++||||
T Consensus 173 ~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~~~~~~-~~~L~~Spql~~k~l~--~~g~~rvy~ 249 (487)
T 1eov_A 173 TNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKG-KAYLAQSPQFNKQQLI--VADFERVYE 249 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEEETTE-EEEECSCTHHHHHHHH--HTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCcccceeccCCc-cEEcccChHHHHHHHH--hcCCCceEE
Confidence 9999999999999999999999999999999999999999999999988765 4678888765543222 236999999
Q ss_pred EecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCC
Q 012529 223 FGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERD 301 (461)
Q Consensus 223 I~~~FR~E~~~t~rHl~EFtmlE~e~a~~-d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 301 (461)
||||||||++++.||+|||||||||++|. +++|+|+++|+||+++++.+.+.+..++..+....... .+....+.+
T Consensus 250 ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~~~l~~~~~~~~~~---~~~~~~~~~ 326 (487)
T 1eov_A 250 IGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVE---EFKLPKDGK 326 (487)
T ss_dssp EEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCC---CCCCCTTCC
T ss_pred EeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhcCCc---ceecccCCC
Confidence 99999999999999999999999999997 69999999999999999999887776654433211110 111011237
Q ss_pred CccccHHHHHHHHHHhcccccccccccccCChHhhhchhhh---cccCCCeeeeeCCccCCcccccc-CCCccceecccc
Q 012529 302 FVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEE---AFGGCPVIVSDYPKEIKAFYMRQ-NDDGRTVAAMDM 377 (461)
Q Consensus 302 ~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~---~~~~~p~~i~~~P~~~~pf~~~~-~~~~~~~~~fdl 377 (461)
|++++|.||++++++.|.+ ..|+.++...+|+.|.+. .+...|+||+|||.+++|||++. ++|+.++++|||
T Consensus 327 ~~ri~~~ea~~~l~~~g~~----~~~~~d~~~~~e~~l~~~~~~~~~~~~~~v~dyP~~~~pfy~~~~~~dp~~~~~fDL 402 (487)
T 1eov_A 327 MVRLTYKEGIEMLRAAGKE----IGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDF 402 (487)
T ss_dssp CEEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHHHHHHHSCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEE
T ss_pred eeEEEHHHHHHHHHHhCCC----CCcccchhhHHHHHHHHHHHHHhCCCCEEEECCccccChhhcCcCCCCCCeEEEEEE
Confidence 8999999999999887754 457778888888887632 23335789999999999997554 445678999999
Q ss_pred ccCCceeeechhhhcccHHHHHHHHHHcCCCcc--cHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccccccCCCC
Q 012529 378 LVPRIGELIGGSQREERLEYLEGRLDELKLNRD--SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 455 (461)
Q Consensus 378 ~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~--~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~ 455 (461)
+++|+ ||+|||+|+||++.|++++++.|++++ .++|||+|++||+|||||||||||||+|++||.+||||||+|||+
T Consensus 403 ~~~G~-Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~ 481 (487)
T 1eov_A 403 FMRGE-EILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRD 481 (487)
T ss_dssp EETTE-EEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGGGGCSSCCB
T ss_pred EeCCE-EEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeEEEEhHHHHHHHHcCCCcHHheeecCCC
Confidence 99995 999999999999999999999999988 789999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 012529 456 PGSVE 460 (461)
Q Consensus 456 ~~~~~ 460 (461)
++||.
T Consensus 482 ~~r~~ 486 (487)
T 1eov_A 482 PKRLR 486 (487)
T ss_dssp TTBCC
T ss_pred CCCCC
Confidence 99985
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-94 Score=759.74 Aligned_cols=436 Identities=17% Similarity=0.203 Sum_probs=351.6
Q ss_pred CccccceeeeccccCCCcC---CCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCccCccEEEEEeCCCc----chhhh-
Q 012529 5 VGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAE----GYDQV- 75 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~---~~~~~~~~v~v~G~v~~~R~~~-~~~Fi~l~D~s~~~~iQvv~~~~~~----~~~~~- 75 (461)
.++|.++++++++.+.+++ +....|++|+|+|||+++|.+| |++|++|||++| .||||++++.. .|..+
T Consensus 28 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~~~~ 105 (521)
T 3bju_A 28 PHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV--KLQVMANSRNYKSEEEFIHIN 105 (521)
T ss_dssp CSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTE--EEEEEEEGGGSSCHHHHHHHH
T ss_pred CCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCE--EEEEEEECCccCCHHHHHHHH
Confidence 4678999999999764422 2334578999999999999998 999999999996 49999987542 35543
Q ss_pred hhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcc-cCChhhhhcCccccCC-CHHHHHHHHHHHH
Q 012529 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPR-TNTFGAVARVRNA 153 (461)
Q Consensus 76 ~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~-~~~~~~~r~~r~l~~R-~~~~~~~l~~Rs~ 153 (461)
+. |+.||+|.|+|+|.+++++ ++||+|++++|||+|..++|.... ..+.+...++||||+| ++.++++|++||+
T Consensus 106 ~~--l~~gd~V~V~G~v~~t~~g--e~ei~~~~i~~l~~~~~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~ 181 (521)
T 3bju_A 106 NK--LRRGDIIGVQGNPGKTKKG--ELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSK 181 (521)
T ss_dssp HH--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCCSCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHHHHH
T ss_pred hc--CCCCCEEEEEEEEEecCCC--CEEEEEeEEEEeecCCCCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHHHHH
Confidence 56 9999999999999999865 899999999999999866665433 2456666799999999 7899999999999
Q ss_pred HHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeee--ecCCCcccccCCccccCCCccccCcCcceeEEEecccccCC
Q 012529 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVT--TLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN 231 (461)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~--~~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~ 231 (461)
++++||+||.++||+||+||+|+++++|+++++|.+. +++. ..+|.+||++.++++.. +|++||||||||||||+
T Consensus 182 i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~~~~~~~-~~yL~~SpqL~lk~liv--~g~~rVyeig~~FR~E~ 258 (521)
T 3bju_A 182 IITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDM-NLYMRIAPELYHKMLVV--GGIDRVYEIGRQFRNEG 258 (521)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEETTTTE-EEEECSCSHHHHHHHHH--TTCCEEEEEEEEECCSC
T ss_pred HHHHHHHHHHHCCCEEEeCceeeccCCCccccceeeecccCCc-ceEeeCCHHHHHHHHHh--cCcCceEEEEcceeCCC
Confidence 9999999999999999999999998877778999653 2332 46788887655544433 36999999999999999
Q ss_pred CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHH
Q 012529 232 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 311 (461)
Q Consensus 232 ~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~ 311 (461)
+++ |||||||||||||||+||+|+|+++|+||+++++.+.+.+. +.+.....+. ..+...+..||+++||.||+
T Consensus 259 ~~t-rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~~--~~~~~~~~d~---~~~~~d~~~pf~rit~~eai 332 (521)
T 3bju_A 259 IDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYK--VTYHPDGPEG---QAYDVDFTPPFRRINMVEEL 332 (521)
T ss_dssp CBT-TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSSSE--EEECTTCTTS---CCEEEECCSSCEEEEHHHHH
T ss_pred CCC-ccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCce--EEeccccccc---ccceeccCCCcccccHHHHH
Confidence 975 99999999999999999999999999999999999987652 2222110000 00011133567777777776
Q ss_pred HHHHHh------------------------cccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCC
Q 012529 312 ELLIKA------------------------KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND 367 (461)
Q Consensus 312 ~~l~~~------------------------~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~ 367 (461)
+.+... +..+.....||..++..+|+++.+.+ . +|+||+|||.+++|||++.++
T Consensus 333 ~~~~g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~ve~~l-~-~P~fI~dyP~~~spla~~~~~ 410 (521)
T 3bju_A 333 EKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC-I-NPTFICDHPQIMSPLAKWHRS 410 (521)
T ss_dssp HHHHTSCCCCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHTGGGC-C-SCEEEECCBGGGCTTBCBCSS
T ss_pred HHHhCCCCCccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhc-C-CcEEEECCccccCcccccCCC
Confidence 655422 11111223456667777888877755 3 699999999999999988777
Q ss_pred CccceeccccccCCceeeechhhhcccHHHHHHHHHHc------CCCccc--HHHHHHHhccCCCCCccccccHHHHHHH
Q 012529 368 DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQF 439 (461)
Q Consensus 368 ~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~------~~~~~~--~~~yl~a~~~G~pP~gG~giGidRLvm~ 439 (461)
|+.+++|||||++| +||+||++|+||++.|+++++++ |.+++. ++|||+|++||||||||||||||||+|+
T Consensus 411 dp~~~~rfdL~i~G-~Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~yl~al~yG~PP~gG~GlGiDRLvMl 489 (521)
T 3bju_A 411 KEGLTERFELFVMK-KEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMF 489 (521)
T ss_dssp STTBBSEEEEEETT-EEEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHHHHHTTTCCSEEEEEEEHHHHHHH
T ss_pred CCCeeeeEEEEEcc-eeeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHHHHHHHhcCCCCceeEEEcHHHHHHH
Confidence 77899999999999 59999999999999999998654 776665 5999999999999999999999999999
Q ss_pred HcCCCCccccccCCCCCCC
Q 012529 440 ATGVENIRDAIPFPRTPGS 458 (461)
Q Consensus 440 l~g~~~Irdv~~FPr~~~~ 458 (461)
+||++||||||+||+++..
T Consensus 490 ltg~~~IRdVi~FP~~~~~ 508 (521)
T 3bju_A 490 LTDSNNIKEVLLFPAMKPE 508 (521)
T ss_dssp HTTCSSGGGSCSSCCCCCC
T ss_pred HhCCCcHHhEecCCCCCCc
Confidence 9999999999999998864
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-95 Score=757.85 Aligned_cols=427 Identities=20% Similarity=0.266 Sum_probs=343.6
Q ss_pred CccccceeeeccccCCCcCC----CCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhhhhh
Q 012529 5 VGEFRKKLKIVDVKGGPNEG----LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKS 77 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~----~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~~~~ 77 (461)
.++|.++|++.++.+.+.+- ....|++|+|+|||+++|.+||++|++|||++| .||||++++. ..|+.++.
T Consensus 58 p~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg--~iQvv~~~~~~~~~~~~~~~~ 135 (529)
T 4ex5_A 58 PNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGSG--QIQFFVTPADVGAETYDAFKK 135 (529)
T ss_dssp CCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEECSSC--EEEEEECHHHHCHHHHHHHHT
T ss_pred CCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCCCeEEEEEEeCCe--eEEEEEECCcCCHHHHHHHhc
Confidence 46889999999999764210 011278999999999999999999999999997 4999998753 23666777
Q ss_pred cCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCCh---hhhhcCccccCC-CHHHHHHHHHHHH
Q 012529 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPR-TNTFGAVARVRNA 153 (461)
Q Consensus 78 ~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~---~~~r~~r~l~~R-~~~~~~~l~~Rs~ 153 (461)
|+.||+|.|+|+|.+++++ ++||.|++++|||+|. +|+|.+.+++ +...++||||+| ++.++++|++||+
T Consensus 136 --l~~gd~V~V~G~v~~t~~g--elel~~~~i~vLs~a~--~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~ 209 (529)
T 4ex5_A 136 --WDLGDIVAARGVLFRTNKG--ELSVKCTQLRLLAKAL--RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTK 209 (529)
T ss_dssp --CCTTCEEEEEEEEEECTTS--CEEEEEEEEEEEECCS--SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHHHH
T ss_pred --CCCCCEEEEEEEEEEcCCC--cEEEEEEEEEEEecCC--CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 9999999999999998865 8999999999999997 5666665543 556689999997 7899999999999
Q ss_pred HHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCC--CcccccCCccccCCCccccCcCcceeEEEecccccCC
Q 012529 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP--SSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN 231 (461)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~--~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~ 231 (461)
|+++||+||.++||+||+||+|+++++|+++++|.+ +++. ...+|.+||++.++++.+ +|++||||||||||||+
T Consensus 210 i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~t-~~n~~~~~~yL~~SpqLylk~L~v--~G~~rVyeIg~~FR~E~ 286 (529)
T 4ex5_A 210 AIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVT-HHNALDMEMFLRIAPELYLKRLIV--GGFERVFEINRNFRNEG 286 (529)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEE-EETTTTEEEEECSCSHHHHHHHHH--TTCSEEEEEEEEECCSC
T ss_pred HHHHHHHHHHHCCCEEEeCCeeeccCCCCccccccc-ccccCCcceecccCHHHHHHHHHh--cCCCcEEEeehheecCC
Confidence 999999999999999999999998877777799964 3332 245678888765554443 36999999999999999
Q ss_pred CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHH
Q 012529 232 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 311 (461)
Q Consensus 232 ~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~ 311 (461)
++ .||||||||||||++|+|++|+|+++|+||+++++.+.+.+ ++.+.+... .+..||+||||.||+
T Consensus 287 ~~-~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~--~~~~~~~~i----------d~~~pf~Rity~eAi 353 (529)
T 4ex5_A 287 VS-PRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTA--TIQYQGREL----------DLAQPFHRLTITQAI 353 (529)
T ss_dssp CB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCS--EEEETTEEE----------ETTSCCEEEEHHHHH
T ss_pred CC-CCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcC--ceecCceee----------ccCCCceEEEHHHHH
Confidence 96 79999999999999999999999999999999999998765 233322111 145689999999999
Q ss_pred HHHHH-------------------hcccccccc--cccc-cCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCc
Q 012529 312 ELLIK-------------------AKKKFEFLV--KWGC-DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG 369 (461)
Q Consensus 312 ~~l~~-------------------~~~~~~~~~--~~g~-~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~ 369 (461)
+.+.. .|.+++... .|+. ++..+++..++++.+. +|+||+|||.+++|||++.++|+
T Consensus 354 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~~vE~~l~-~P~FI~dyP~~~splak~~~~~p 432 (529)
T 4ex5_A 354 QKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEAQLW-EPTFIIDYPIEVSPLARESDTVA 432 (529)
T ss_dssp HHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHHHTGGGCC-SCEEEEEEEGGGCTTBCBCSSST
T ss_pred HHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHhccccC-CCEEEECCchhhCCCcccCCCCC
Confidence 87543 122222100 3432 3334444445565665 79999999999999997777777
Q ss_pred cceeccccccCCceeeechhhhcccHHHHHHHHHH------cCCCcccH--HHHHHHhccCCCCCccccccHHHHHHHHc
Q 012529 370 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFAT 441 (461)
Q Consensus 370 ~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~------~~~~~~~~--~~yl~a~~~G~pP~gG~giGidRLvm~l~ 441 (461)
.+++|||||++|+ ||+||++|+||++.|.+++.+ .|.+++.+ +|||+|++||||||||||||||||+|++|
T Consensus 433 ~~~~rFeL~i~G~-EianG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~yl~aleyG~PP~gG~GlGiDRLvMllt 511 (529)
T 4ex5_A 433 GITERFELFITGR-EIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEYGMPPTGGCGIGIDRLVMLLT 511 (529)
T ss_dssp TEEEEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCCEEEEEEEHHHHHHHHH
T ss_pred CceEEEEEEECCE-EEecchhccCCHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHcCCCCCcEEEEeHHHHHHHHc
Confidence 8899999999995 999999999999999888753 24333332 89999999999999999999999999999
Q ss_pred CCCCccccccCCCCCC
Q 012529 442 GVENIRDAIPFPRTPG 457 (461)
Q Consensus 442 g~~~Irdv~~FPr~~~ 457 (461)
|++|||||++||+...
T Consensus 512 g~~~IRdVi~FP~~r~ 527 (529)
T 4ex5_A 512 DSPTIRDVLLFPHLRR 527 (529)
T ss_dssp TCSSGGGGCSSCCCCC
T ss_pred CCCcHHHeecCCccCC
Confidence 9999999999999764
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-94 Score=752.37 Aligned_cols=427 Identities=19% Similarity=0.281 Sum_probs=342.0
Q ss_pred CccccceeeeccccCCCcCCC----CCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchh-hhh
Q 012529 5 VGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD-QVK 76 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~~----~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~-~~~ 76 (461)
.++|.++|++.++.+.+.+-. ...|++|+|+|||+++|.+||++|++|||++|. ||||++++. ..|+ .++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg~--iQvv~~~~~~~~~~~~~~~~ 113 (504)
T 1e1o_A 36 PNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGR--IQLYVARDSLPEGVYNDQFK 113 (504)
T ss_dssp CCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEEETTTSSTTHHHHTGG
T ss_pred CCCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCCCcEEEEEEECCee--EEEEEECCcCCHHHHHHHHh
Confidence 467899999999997642100 012789999999999999999999999999974 999998764 2366 567
Q ss_pred hcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCC---hhhhhcCccccCC-CHHHHHHHHHHH
Q 012529 77 SGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRN 152 (461)
Q Consensus 77 ~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~---~~~~r~~r~l~~R-~~~~~~~l~~Rs 152 (461)
. |+.||+|.|+|+|.+++++ ++||+|++++|||+|.. |+|.+.++ .+...++||||+| ++.++++|++||
T Consensus 114 ~--l~~g~~V~V~G~v~~~~~g--e~ei~~~~i~vl~~a~~--plP~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs 187 (504)
T 1e1o_A 114 K--WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKALR--PLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRS 187 (504)
T ss_dssp G--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSS--CCCC-------TTHHHHTHHHHHHHCHHHHHHHHHHH
T ss_pred c--CCCCCEEEEEEEEEecCCc--eEEEEEEEEEEecccCC--CCCccccCCcChhhhhhccchhhhcCHHHHHHHHHHH
Confidence 7 9999999999999999875 89999999999999974 44455554 4556689999995 899999999999
Q ss_pred HHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeee--cCCCcccccCCccccCCCccccCcCcceeEEEecccccC
Q 012529 153 ALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTT--LIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAE 230 (461)
Q Consensus 153 ~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~--~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E 230 (461)
+|++++|+||.++||+||+||+|+++++|+++++|.+.+ ++. ..+|.+||++.++++.. +|++||||||||||||
T Consensus 188 ~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~~~~~~~-~~yL~~SpqLylk~L~v--~G~~rVyeIg~~FR~E 264 (504)
T 1e1o_A 188 KILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDL-DMYLRIAPELYLKRLVV--GGFERVFEINRNFRNE 264 (504)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTE-EEEECSCSHHHHHHHHH--HTCCEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEeccCCCCc-eEEeccCHHHHHHHHhh--cCCCcEEEEcccccCC
Confidence 999999999999999999999999887777789998742 332 45677887655443333 3699999999999999
Q ss_pred CCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHH
Q 012529 231 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDA 310 (461)
Q Consensus 231 ~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea 310 (461)
+++ .|||||||||||||+|+|++|+|+++|+||+++++.+.+.+. +.+.+.. + -+..||+|+||.||
T Consensus 265 ~~~-~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~--i~~~~~~--------i--~~~~pf~rity~eA 331 (504)
T 1e1o_A 265 GIS-VRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTK--VTYGEHV--------F--DFGKPFEKLTMREA 331 (504)
T ss_dssp CCC-C-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSE--EEETTEE--------E--ETTSCCEEEEHHHH
T ss_pred CCC-ccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCce--eeeCCEe--------e--ccCCCceEEeHHHH
Confidence 996 599999999999999999999999999999999999988763 4332211 1 13468999999999
Q ss_pred HHHHHH-hcc------------------cccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCccc
Q 012529 311 IELLIK-AKK------------------KFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRT 371 (461)
Q Consensus 311 ~~~l~~-~~~------------------~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~ 371 (461)
++.+.. .+. +++....+|..++..++.++ ++.+. +|+||+|||.+++||+++.++|+.+
T Consensus 332 i~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~v-e~~~~-~p~fV~dyP~~~~pf~~~~~~dp~~ 409 (504)
T 1e1o_A 332 IKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVA-EAHLI-QPTFITEYPAEVSPLARRNDVNPEI 409 (504)
T ss_dssp HHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHT-GGGCC-SCEEEECCBGGGCTTBCBCSSCTTB
T ss_pred HHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHHHh-hccCC-CeEEEECCCcccCcCcCCCCCCCCc
Confidence 987754 221 11100111222333445544 44444 7999999999999999877777788
Q ss_pred eeccccccCCceeeechhhhcccHHHHHHHHHHc-----CCCcccH---HHHHHHhccCCCCCccccccHHHHHHHHcCC
Q 012529 372 VAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWYLDLRHYGSVPHAGFGLGFERLVQFATGV 443 (461)
Q Consensus 372 ~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~-----~~~~~~~---~~yl~a~~~G~pP~gG~giGidRLvm~l~g~ 443 (461)
+++|||+++|+ ||+|||+|+||++.|+++++++ ..+++.+ +|||+|++||+|||||||||||||+|+|||.
T Consensus 410 ~~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~glGiDRLvmlltg~ 488 (504)
T 1e1o_A 410 TDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNS 488 (504)
T ss_dssp BSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEEEEEEHHHHHHHHHTC
T ss_pred eEEEEEEECCe-EEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHhcCCCCceeEEEcHHHHHHHHhCC
Confidence 99999999997 9999999999999999998753 1234443 9999999999999999999999999999999
Q ss_pred CCccccccCCCCCCC
Q 012529 444 ENIRDAIPFPRTPGS 458 (461)
Q Consensus 444 ~~Irdv~~FPr~~~~ 458 (461)
+||||||+||+++..
T Consensus 489 ~~IRdVi~FPr~~~~ 503 (504)
T 1e1o_A 489 HTIRDVILFPAMRPQ 503 (504)
T ss_dssp SSGGGTSSSCCCCC-
T ss_pred CcHHhEeccCCCCCC
Confidence 999999999998753
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-94 Score=749.01 Aligned_cols=426 Identities=19% Similarity=0.260 Sum_probs=343.5
Q ss_pred CccccceeeeccccCCCcCCC----CCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC---cchhhhhh
Q 012529 5 VGEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKS 77 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~~----~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~---~~~~~~~~ 77 (461)
.++|.++|++.++.+.+.+-. ...|++|+|+|||+++|.+||++|++|||++| .||||++++. ..|+.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~~~~ 105 (493)
T 3a74_A 28 GKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTG--QIQIYVRQDDVGEQQYELFKI 105 (493)
T ss_dssp CCCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEEHHHHHHHHHHHHHH
T ss_pred CCCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCCCcEEEEEEECCE--eEEEEEECCcCCHHHHHHHhc
Confidence 457899999999997642100 01278999999999999999999999999997 4999998653 23566777
Q ss_pred cCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCCCcccCC---hhhhhcCccccCC-CHHHHHHHHHHHH
Q 012529 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNA 153 (461)
Q Consensus 78 ~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~---~~~~r~~r~l~~R-~~~~~~~l~~Rs~ 153 (461)
|+.||+|.|+|+|.+++++ ++||+|++++|||+|.. |+|.+.++ .+...++||||+| ++.+++++++||+
T Consensus 106 --l~~g~~v~V~G~v~~~~~g--e~ei~~~~i~vl~~~~~--plP~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~ 179 (493)
T 3a74_A 106 --SDLGDIVGVRGTMFKTKVG--ELSIKVSSYEFLTKALR--PLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSL 179 (493)
T ss_dssp --CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSS--CCCCC-----CHHHHHHTHHHHHHHCTHHHHHHHHHHH
T ss_pred --CCCCCEEEEEEEEEeCCCC--cEEEEEEEEEEcccccC--CCCccccCCCCHhhhhhcchhhhhcCHHHHHHHHHHHH
Confidence 9999999999999999875 89999999999999974 45455554 5566699999996 8899999999999
Q ss_pred HHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeee--cCCCcccccCCccccCCCccccCcCcceeEEEecccccCC
Q 012529 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTT--LIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN 231 (461)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~--~~~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~ 231 (461)
|++++|+||.++||+||+||+|+++++|+++++|.+.+ ++. ..+|.+||++.++.+.. +|++||||||||||||+
T Consensus 180 i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~~~~~~~-~~yLr~SpqLylk~l~v--~G~~rVyeig~~FR~E~ 256 (493)
T 3a74_A 180 IIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDM-TLYMRIAIELHLKRLIV--GGLEKVYEIGRVFRNEG 256 (493)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTE-EEEECSCSHHHHHHHHH--TTCCEEEEEEEEECCCC
T ss_pred HHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEecccCCCc-eeEEecCHHHHHHHHhh--cccCceEEECccccCCC
Confidence 99999999999999999999999887777789998742 332 45677887655433333 36999999999999999
Q ss_pred CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHH
Q 012529 232 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 311 (461)
Q Consensus 232 ~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~ 311 (461)
++ .|||||||||||||+|+|++|+|+++|+||+++++.+.+.+. +.+.+.. + -+..||+++||.||+
T Consensus 257 ~~-~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~--i~~~~~~--------i--~~~~pf~rity~eai 323 (493)
T 3a74_A 257 IS-TRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTK--IQYGEHL--------V--DLTPEWRRLHMVDAI 323 (493)
T ss_dssp CB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSE--EEETTEE--------E--ECCSSCEEEEHHHHH
T ss_pred CC-cccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCce--EeeCCEe--------e--ccCCCcceeeHHHHH
Confidence 96 599999999999999999999999999999999999988763 3332210 0 123577777777777
Q ss_pred HHHHH------------------hcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCCCcccee
Q 012529 312 ELLIK------------------AKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 373 (461)
Q Consensus 312 ~~l~~------------------~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~ 373 (461)
+.+.. .|.+++....||..++..++.++.+ .+. +|+||+|||.+++|||++.++|+.+++
T Consensus 324 ~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~-~~~-~p~fv~dyP~~~~pf~~~~~~dp~~~~ 401 (493)
T 3a74_A 324 KEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVED-KLI-QPTFIYGHPVEISPLAKKNPDDPRFTD 401 (493)
T ss_dssp HHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGG-GCC-SCEEEECCBGGGCTTBCBCSSCTTBBS
T ss_pred HHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHhhc-ccC-CcEEEECCCcccCCccCcCCCCCCeEE
Confidence 66542 2322221122445555556665544 444 799999999999999987777778899
Q ss_pred ccccccCCceeeechhhhcccHHHHHHHHHHc-----CCCcccH---HHHHHHhccCCCCCccccccHHHHHHHHcCCCC
Q 012529 374 AMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWYLDLRHYGSVPHAGFGLGFERLVQFATGVEN 445 (461)
Q Consensus 374 ~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~-----~~~~~~~---~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~ 445 (461)
+|||+++|+ ||+||++|+||++.|+++++++ ..+++.+ +|||+|++||+|||||||||||||+|++||.+|
T Consensus 402 ~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG~glGiDRLvmlltg~~~ 480 (493)
T 3a74_A 402 RFELFIVGR-EHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTGGLGIGVDRLVMLLTNSPS 480 (493)
T ss_dssp EEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEEEEEEEHHHHHHHHHTCSS
T ss_pred EEEEEeCCe-EEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCceeEEEcHHHHHHHHhCCCc
Confidence 999999997 9999999999999999998653 1234433 999999999999999999999999999999999
Q ss_pred ccccccCCCCCC
Q 012529 446 IRDAIPFPRTPG 457 (461)
Q Consensus 446 Irdv~~FPr~~~ 457 (461)
|||||+||+.+.
T Consensus 481 IRdVi~FPr~~~ 492 (493)
T 3a74_A 481 IRDVLLFPQMRH 492 (493)
T ss_dssp GGGTSSSCCCCC
T ss_pred HHhEeccCCCCC
Confidence 999999999874
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-93 Score=752.70 Aligned_cols=412 Identities=22% Similarity=0.350 Sum_probs=330.0
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~ 89 (461)
++|+|.+|... +.|++|+|+|||+++|.+|+++|++|||++|. ||||++++...|+.++. |+.||+|.|+
T Consensus 3 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~--l~~e~~V~V~ 72 (580)
T 1l0w_A 3 RTHYAGSLRET------HVGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVRAK 72 (580)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred cEEEHHHhHHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCChhHHHHHhc--CCCCcEEEEE
Confidence 68899999874 67999999999999999999999999999975 99999876434666677 9999999999
Q ss_pred eeEeecCC-----CCccEEEEEeEEEEeccCCC-CCCCCc------ccCChhhhh-cCccccCCCHHHHHHHHHHHHHHH
Q 012529 90 GNVVPSQG-----SKQKVELKVNKIVLVGKSDP-SYPIQK------KRVSREFLR-TKAHLRPRTNTFGAVARVRNALAY 156 (461)
Q Consensus 90 G~~~~~~~-----~~~~~el~~~~i~vl~~~~~-~~Pl~~------~~~~~~~~r-~~r~l~~R~~~~~~~l~~Rs~i~~ 156 (461)
|+|.+++. +++++||+|++++|||+|.+ ++|+.. +....+.+| ++||||+|++.++++|++||++++
T Consensus 73 G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~ 152 (580)
T 1l0w_A 73 GLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIK 152 (580)
T ss_dssp EEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 99999852 35689999999999999974 355644 323334444 999999999999999999999999
Q ss_pred HHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCC-Cccc-ccCCccccCCCccccCcCcceeEEEecccccCCCCC
Q 012529 157 ATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP-SSRE-AAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNT 234 (461)
Q Consensus 157 ~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~-~~~~-~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t 234 (461)
++|+||.++||+||+||+|+++++||+++ |.|.+... ...+ |.+||.+.++.+ +.+|++||||||||||||++++
T Consensus 153 ~iR~fl~~~gF~EVeTPiL~~s~~eGAr~-F~v~~~~~~~~~y~L~qSPQl~kq~L--mv~G~~rvfqI~~~FR~E~~~~ 229 (580)
T 1l0w_A 153 AIWDFLDREGFVQVETPFLTKSTPEGARD-FLVPYRHEPGLFYALPQSPQLFKQML--MVAGLDRYFQIARCFRDEDLRA 229 (580)
T ss_dssp HHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEEECTTSTTEEEECCSCSHHHHHHH--HHTTCSEEEEEEEEECCCCCCS
T ss_pred HHHHHHHhCCcEEEeCCEEecCCCCCCCC-ccccccccCCceeECccCHHHHHHHH--HHhccCCeEEEeceeeCCCCCC
Confidence 99999999999999999999999998765 87754321 1223 666765443322 2346999999999999999986
Q ss_pred CCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHH
Q 012529 235 SRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL 314 (461)
Q Consensus 235 ~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l 314 (461)
+|| ||||||||||+|+|++|+|+++|+||+++++.+.+.. +..||+|+||.||++.+
T Consensus 230 ~r~-pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~----------------------~~~pf~rity~eA~~~~ 286 (580)
T 1l0w_A 230 DRQ-PDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVE----------------------LPLPFPRLSYEEAMERY 286 (580)
T ss_dssp SCC-SEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCCC----------------------CCSSCCEEEHHHHHHHH
T ss_pred CcC-CCccceeeeecCCCHHHHHHHHHHHHHHHHHHHhCCc----------------------cCCCccEEEHHHHHHHh
Confidence 655 6999999999999999999999999999999986421 12366777777776654
Q ss_pred H-------------------------------------------------------Hhccccccccccccc-CChHhhhc
Q 012529 315 I-------------------------------------------------------KAKKKFEFLVKWGCD-LQSEHERY 338 (461)
Q Consensus 315 ~-------------------------------------------------------~~~~~~~~~~~~g~~-l~~~~e~~ 338 (461)
. +.|.+--..+.|+.+ +.+.++++
T Consensus 287 g~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~k~ 366 (580)
T 1l0w_A 287 GSDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKRHKAQGLAWARVEEGGFSGGVAKF 366 (580)
T ss_dssp SSSSCCCSSCCCCEECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHHHHHHHHHTSCSCCEEEEEETTEEESTTHHH
T ss_pred cCCCcccccccchhhhhhhhhccccccccccceeEEEeccCccCHHHHHHHHHHHHHcCCCcceEEEecCccccchhhhh
Confidence 1 111000000112322 22222222
Q ss_pred ----------------------------------------------hhhhcccCCCeeeeeCCcc------------CCc
Q 012529 339 ----------------------------------------------LTEEAFGGCPVIVSDYPKE------------IKA 360 (461)
Q Consensus 339 ----------------------------------------------l~e~~~~~~p~~i~~~P~~------------~~p 360 (461)
|+++ . .+|+||+|||.. ++|
T Consensus 367 l~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~-~-~~p~fV~dfP~~~~~~~~~~~~a~~~P 444 (580)
T 1l0w_A 367 LEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKRE-G-FRFLWVVDFPLLEWDEEEEAWTYMHHP 444 (580)
T ss_dssp HGGGHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCC-S-CCEEEEECCBSBCCCTTTSCCCBSSCT
T ss_pred hhHHHHHHHHHhCCCcCceEEEecCccchhhhhHHHHHHHHHHHhccccc-c-cCeEEEEcCCcccccccccccccccCC
Confidence 2222 2 379999999996 899
Q ss_pred cccccCC-------Cc-cc-eeccccccCCceeeechhhhcccHHHHHHHHHHcCCCccc----HHHHHHHhccCCCCCc
Q 012529 361 FYMRQND-------DG-RT-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHA 427 (461)
Q Consensus 361 f~~~~~~-------~~-~~-~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~----~~~yl~a~~~G~pP~g 427 (461)
|||+.++ |+ .. +++|||++||+ ||+|||+|+||++.|+++++.+|+++++ ++|||+|++||+||||
T Consensus 445 Ft~~~~~dl~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~al~yG~PPhg 523 (580)
T 1l0w_A 445 FTSPHPEDLPLLEKDPGRVRALAYDLVLNGV-EVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHG 523 (580)
T ss_dssp TBCBCSTTTTHHHHCGGGCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEE
T ss_pred ccCCCchhhhhhcCCccceeeeEEEEEeCCE-EEEeCeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHHHHhcCCCCCc
Confidence 9998765 34 24 78999999997 9999999999999999999999998876 7899999999999999
Q ss_pred cccccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 428 GFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 428 G~giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
|||||||||+|++||.+||||||+||++++.+.
T Consensus 524 G~glGlDRLvMll~g~~sIRdVi~FP~~~~~~~ 556 (580)
T 1l0w_A 524 GIAWGLDRLLALMTGSPSIREVIAFPKNKEGKD 556 (580)
T ss_dssp EEEEEHHHHHHHHHTCSSGGGGSSSCCCTTSCB
T ss_pred eEEEcHHHHHHHHcCCCcHHeEecCCCCCCccc
Confidence 999999999999999999999999999998764
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-91 Score=746.32 Aligned_cols=434 Identities=21% Similarity=0.313 Sum_probs=337.7
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCC-cchhhhhhcCCCCCcEEEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWI 88 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~-~~~~~~~~~~l~~g~~V~v 88 (461)
++|+|.+|... +.|++|+|+|||+++|.+|+++|++|||++|. ||||++++. ..|+.++. |+.||+|.|
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~--l~~e~~V~V 71 (585)
T 1c0a_A 2 RTEYCGQLRLS------HVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASE--LRNEFCIQV 71 (585)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECGGGHHHHHHHTT--CCTTCEEEE
T ss_pred ceeEHHHHHHH------hCCCEEEEEEEEEEEecCCCcEEEEEEECCee--EEEEEeCCchHHHHHHhc--CCCCCEEEE
Confidence 57889999874 67999999999999999999999999999975 999997653 23556667 999999999
Q ss_pred EeeEeecCC-------CCccEEEEEeEEEEeccCCCCCCCCcc-cCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHH
Q 012529 89 QGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHK 160 (461)
Q Consensus 89 ~G~~~~~~~-------~~~~~el~~~~i~vl~~~~~~~Pl~~~-~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ 160 (461)
+|+|.+++. .++++||+|++++|||+|.+ +|++.. ..+.+..+++||||+|++.++++|++||++++++|+
T Consensus 72 ~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~~-lP~~~~~~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~ 150 (585)
T 1c0a_A 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRADV-LPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRR 150 (585)
T ss_dssp EEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCCS-CSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred EeEEEccCcccccccCCCccEEEEEeEEEEEeccCC-CCCCccccCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999865 35789999999999999973 444433 344454459999999999999999999999999999
Q ss_pred HhhhCCcEEEecceeecCCCCCCCcceeeeecCC-Ccc-cccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCc
Q 012529 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLIP-SSR-EAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHL 238 (461)
Q Consensus 161 ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~-~~~-~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl 238 (461)
||.++||+||+||+|+++++|||++ |.|.+... ... .|.+||.+.++.+ +.+|++||||||||||||+++++||
T Consensus 151 fl~~~gFlEVeTPiL~~s~~eGAr~-F~v~~~~~~~~~y~L~qSPQl~kq~L--mv~G~~rvfqI~~~FR~E~~~t~r~- 226 (585)
T 1c0a_A 151 FMDDHGFLDIETPMLTKATPEGARD-YLVPSRVHKGKFYALPQSPQLFKQLL--MMSGFDRYYQIVKCFRDEDLRADRQ- 226 (585)
T ss_dssp HHHHTTCEECCCCSSBCCCSSSSCC-CEEECSSSTTCEEECCSCSHHHHHHH--HHTTCCEEEEEEEEECCCCCBTTBC-
T ss_pred HHHhCCcEEEeCCEEecCCCCCCcc-ceecccccCCceEeCccCHHHHHHHH--HhcCCCceEEEeceeecCCCCCCcC-
Confidence 9999999999999999999998765 88754321 122 3666665433222 2347999999999999999986666
Q ss_pred cccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCc---------chhcccccccc-----------------chh--
Q 012529 239 AEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK---------EDMDFFNTWIE-----------------KGI-- 290 (461)
Q Consensus 239 ~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~---------~~l~~~~~~~~-----------------~~~-- 290 (461)
||||||||||+|+|++|+|+++|+||+++++.+.+.+. +.++.++...+ .++
T Consensus 227 pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~~~~f~r~ty~ea~~~~g~dkpd~r~~~~l~d~~~~~~~~~f~~ 306 (585)
T 1c0a_A 227 PEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAV 306 (585)
T ss_dssp SEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCCCSCCEEEHHHHHHHHSCSSCCTTSCCCEEECHHHHTTCSCHH
T ss_pred cccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCccccceeeHHHHHHHhcCCCccccCCceeEEehhhhccCCcce
Confidence 69999999999999999999999999999999976442 12222211100 000
Q ss_pred -hhhhhh----h-----h-cCCCccccHHHHHHHHHHhcccccccccccc------cCChHhhhc---------------
Q 012529 291 -IDRLST----V-----A-ERDFVQLSYTDAIELLIKAKKKFEFLVKWGC------DLQSEHERY--------------- 338 (461)
Q Consensus 291 -~~~l~~----~-----~-~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~------~l~~~~e~~--------------- 338 (461)
.+.+++ + . +.+|++.+++++.+++++.|.+--..+.|+. ++.+.++++
T Consensus 307 ~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~ 386 (585)
T 1c0a_A 307 FAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAA 386 (585)
T ss_dssp HHHHHHCTTEEEEEEEETTGGGCCHHHHHHHHHHHHHTTCSCCCEEEESCGGGGGGGEECTTGGGSCHHHHHHHHHHTTC
T ss_pred ehhhhhccCceEEEEEccccCccCHhhHHHHHHHHHHcCCCCceeEEecccccccccccchhhhhcCHHHHHHHHHHhCC
Confidence 000000 0 0 1236777888888888876532000112332 122222222
Q ss_pred --------------------------------hhhhcccCCCeeeeeCCcc-----------CCccccccCC-------C
Q 012529 339 --------------------------------LTEEAFGGCPVIVSDYPKE-----------IKAFYMRQND-------D 368 (461)
Q Consensus 339 --------------------------------l~e~~~~~~p~~i~~~P~~-----------~~pf~~~~~~-------~ 368 (461)
++++.. .+|+||||||.. ++||||+.++ |
T Consensus 387 ~~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~-~~p~fV~dfP~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~d 465 (585)
T 1c0a_A 387 QDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESK-WAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAA 465 (585)
T ss_dssp CTTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSC-CCEEEEECCBSEEECSSSCEEESSCTTBCBSSCCHHHHHHS
T ss_pred CcCcEEEEecCcccchhhhhHHHHHHHHHHhCcccccc-cccEEEEeCCccccccccccccccCCccCCCchhhhhhccC
Confidence 122212 269999999996 8999998765 3
Q ss_pred cc-c-eeccccccCCceeeechhhhcccHHHHHHHHHHcCCCccc----HHHHHHHhccCCCCCccccccHHHHHHHHcC
Q 012529 369 GR-T-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATG 442 (461)
Q Consensus 369 ~~-~-~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~----~~~yl~a~~~G~pP~gG~giGidRLvm~l~g 442 (461)
+. . +++|||++||+ ||+|||+|+||++.|+++++.+|+++++ ++|||+|++||+|||||||||||||+|+|||
T Consensus 466 p~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~al~yG~PPhgG~glGlDRLvmlltg 544 (585)
T 1c0a_A 466 PENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTG 544 (585)
T ss_dssp CTTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHT
T ss_pred CcceeeeEEEEEECCE-EEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHHHHhcCCCCceeEEEcHHHHHHHHcC
Confidence 42 4 78999999998 9999999999999999999999999876 8999999999999999999999999999999
Q ss_pred CCCccccccCCCCCCCCC
Q 012529 443 VENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 443 ~~~Irdv~~FPr~~~~~~ 460 (461)
.+||||||+||++++.+.
T Consensus 545 ~~sIRdVi~FPr~~~~~~ 562 (585)
T 1c0a_A 545 TDNIRDVIAFPKTTAAAC 562 (585)
T ss_dssp CSCGGGGSSSCCCTTSCB
T ss_pred CCcHHheecCCCCCCccc
Confidence 999999999999998774
|
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-81 Score=660.74 Aligned_cols=438 Identities=22% Similarity=0.301 Sum_probs=316.0
Q ss_pred CCCCCccc-cceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc---chhhhh
Q 012529 1 MGSKVGEF-RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVK 76 (461)
Q Consensus 1 ~~~~~~~~-~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~---~~~~~~ 76 (461)
|-|.+.+| .|+|+|.+|... +.|++|+|+|||+++|.+ +|++|||++|. ||||++++.. .++.++
T Consensus 1 ~~~~~~~~~~rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~---~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~~ 69 (617)
T 4ah6_A 1 MIPEFSSFVVRTNTCGELRSS------HLGQEVTLCGWIQYRRQN---TFLVLRDFDGL--VQVIIPQDESAASVKKILC 69 (617)
T ss_dssp --CCCSCSSSCSSCGGGCCGG------GTTCEEEEEEEECCCCTT---TEEEEECSSCE--EEEECCCSSSSHHHHHHHH
T ss_pred CCccccccccCceEHHHhHHH------hCCCEEEEEEEeeeecCe---EEEEEEeCCcC--EEEEEeCCcCcHHHHHHHh
Confidence 34555555 567999999875 689999999999999975 59999999974 9999987643 355677
Q ss_pred hcCCCCCcEEEEEeeEeecCC-------CCccEEEEEeEEEEeccCCCCCCCCcccCC--hhhhh-cCccccCCCHHHHH
Q 012529 77 SGLITTGASIWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKRVS--REFLR-TKAHLRPRTNTFGA 146 (461)
Q Consensus 77 ~~~l~~g~~V~v~G~~~~~~~-------~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~--~~~~r-~~r~l~~R~~~~~~ 146 (461)
. |+.||+|.|+|+|++++. .++++||++++++|||+|. ++|++.+++. .+.+| ++||||+|++.+++
T Consensus 70 ~--l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~ 146 (617)
T 4ah6_A 70 E--APVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK-KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQY 146 (617)
T ss_dssp H--CCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHH
T ss_pred c--CCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCcccccccccChhhhccceeeeecchHHHH
Confidence 8 999999999999998653 2468999999999999998 7888766543 34445 99999999999999
Q ss_pred HHHHHHHHHHHHHHHhh-hCCcEEEecceeecCCCCCCCcceeeeecCC-CcccccCCccccCCCccccCcCcceeEEEe
Q 012529 147 VARVRNALAYATHKFFQ-ENGFIWISSPIITASDCEGAGEQFCVTTLIP-SSREAAESPVDAIPKTKDGLIDWSQVYTFG 224 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~-~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~ 224 (461)
+|++||++++++|+||. ++||+||+||+|+++++||+. +|.+++... ...+|.+||.+.+..+ +.+|++||||||
T Consensus 147 ~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~-~F~v~~~~~g~~~~L~qSpql~kq~l--~v~g~~rvfqi~ 223 (617)
T 4ah6_A 147 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAK-EFLVPSREPGKFYSLPQSPQQFKQLL--MVGGLDRYFQVA 223 (617)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSC-CCEEECSSTTCEEECCSSTTHHHHHH--HHTSCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCc-CceeccccCCcccccccCHHHHHHHH--HhcccCcEEEEE
Confidence 99999999999999996 799999999999998888876 488776432 1235666664332212 234799999999
Q ss_pred cccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcC-------------------cchhccc---
Q 012529 225 PTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNC-------------------KEDMDFF--- 282 (461)
Q Consensus 225 ~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~-------------------~~~l~~~--- 282 (461)
||||||++++ +|+||||||||||+|+|++|+|+++|+|++++++.+.... ++|+.+-
T Consensus 224 ~~FR~E~~~t-~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~~~~~~~~pf~r~ty~eA~~~ygsDkPDlR~~~ei 302 (617)
T 4ah6_A 224 RCYRDEGSRP-DRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDKPDTRFGMKI 302 (617)
T ss_dssp EEECCCSSCS-SSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCSSSCCCCSSCCEEEHHHHHHHTSSSSCCSSSCCCE
T ss_pred hheecccCCC-CcCcceecceeeecCCCHHHHHHHHHHHHHHHHHHhcCccCCCceEeEHHHHHHHHcCCCCccccCccc
Confidence 9999999975 5699999999999999999999999999999986532111 1121110
Q ss_pred ---cccc-cc--hhh-hhhhh---------hhcC--CCccccHHHHHHHHHH----------------------------
Q 012529 283 ---NTWI-EK--GII-DRLST---------VAER--DFVQLSYTDAIELLIK---------------------------- 316 (461)
Q Consensus 283 ---~~~~-~~--~~~-~~l~~---------~~~~--~~~~it~~ea~~~l~~---------------------------- 316 (461)
.... .. .+. ..+.. +.+. .+.|-..++..+..+.
T Consensus 303 ~DVtdif~~s~FkVF~~~~~~~~g~VkAI~vpg~a~~lsRK~id~L~e~ak~~~g~ggl~~~~~~d~~~~~~I~Kflsee 382 (617)
T 4ah6_A 303 IDISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRNWNSPVANFIMES 382 (617)
T ss_dssp EECGGGGSSCCCHHHHHHTTSTTEEEEEEEEESCTTTSCTTTHHHHHHHHHHSSCCCEEEECSSTTTTSSCTTHHHHHHH
T ss_pred ccHHHHhccCCchhHhhhhhcCCCeEEEEEcCCCccccchhhHHHHHHHHHHhcCCceEEEEEecCCccccchhhhcCHH
Confidence 0000 00 000 00000 0000 0111111221111111
Q ss_pred --------hccccccccccccc--------CCh----Hhhhc------hhhhcccCCCeeeeeCCcc-------------
Q 012529 317 --------AKKKFEFLVKWGCD--------LQS----EHERY------LTEEAFGGCPVIVSDYPKE------------- 357 (461)
Q Consensus 317 --------~~~~~~~~~~~g~~--------l~~----~~e~~------l~e~~~~~~p~~i~~~P~~------------- 357 (461)
.+.+-.+.+-++.+ |.. ..+.. |.++- ...++||+|||..
T Consensus 383 ~~~~L~e~l~a~~GDlIff~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~l~~~~-~~~f~WvvdfPlf~~~~~~~~~~~a~ 461 (617)
T 4ah6_A 383 QRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPT-LFSFLWVVDFPLFLPKEENPRELESA 461 (617)
T ss_dssp HHHHHHHHHTCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTSCCSCCTT-SCCEEEEECCBSBCCCSSSSSSCCBS
T ss_pred HHHHHHHHhCCCCCCEEEEecCChHHHHHHHHHHHHHHHHHhhhccccccCCC-CeEEEEEeccCCcCCccccccceeec
Confidence 11110000000000 000 00110 11111 1268999999983
Q ss_pred CCccccccCCC-------cc--ceeccccccCCceeeechhhhcccHHHHHHHHH-HcCCCcccHHHHHHHhccCCCCCc
Q 012529 358 IKAFYMRQNDD-------GR--TVAAMDMLVPRIGELIGGSQREERLEYLEGRLD-ELKLNRDSYWWYLDLRHYGSVPHA 427 (461)
Q Consensus 358 ~~pf~~~~~~~-------~~--~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~-~~~~~~~~~~~yl~a~~~G~pP~g 427 (461)
++||+++..+| +. .+.+|||++||+ ||+|||+|+|+++.|+++++ ..|++.+.++|||+|++||+||||
T Consensus 462 HhPFT~P~~~d~~~l~~~p~~~~a~~ydlv~~g~-El~~gs~ri~~~~~q~~~f~~~~~~~~~~~~~~l~a~~~G~pphg 540 (617)
T 4ah6_A 462 HHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGN-EIGGGSIRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHG 540 (617)
T ss_dssp SCSSCCCCCTTSTHHHHSTTSSBCCCEEEEETTE-EEEEEECCCCSHHHHHHHHHHHCSSTHHHHHHHHHHHTBTCCCEE
T ss_pred cCCcCCCChhhHHHhhcChhhhhhceEEEEECCE-EEeeeeEEcCCHHHHHHHHHHhhccchhhHHHHHHHHHcCCCCCC
Confidence 68999876543 22 357899999996 99999999999999999998 789988889999999999999999
Q ss_pred cccccHHHHHHHHcCCCCccccccCCCCCCC
Q 012529 428 GFGLGFERLVQFATGVENIRDAIPFPRTPGS 458 (461)
Q Consensus 428 G~giGidRLvm~l~g~~~Irdv~~FPr~~~~ 458 (461)
|||+|+|||||+++|.+||||||+||++...
T Consensus 541 G~a~G~dRlvml~~g~~~irdvi~fP~~~~~ 571 (617)
T 4ah6_A 541 GIALGLDRLICLVTGSPSIRDVIAFPKSFRG 571 (617)
T ss_dssp EEEEEHHHHHHHHHTCSSGGGSSSSCCCSSS
T ss_pred ceeecHHHHHHHHcCCCchheEEecCCCCCc
Confidence 9999999999999999999999999998754
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-71 Score=555.45 Aligned_cols=299 Identities=18% Similarity=0.166 Sum_probs=229.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCC-CCCcceeeeecCC-----CcccccCCccccCCCcc
Q 012529 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGEQFCVTTLIP-----SSREAAESPVDAIPKTK 211 (461)
Q Consensus 138 ~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~e-g~~~~F~v~~~~~-----~~~~~~~s~~~~l~~~~ 211 (461)
+.|++ .+++|++||+|+++||+||.++||+||+||+|++++++ +++++|.++|++. ...+|.+||.+.++++.
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~ 105 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLL 105 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHH
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHH
Confidence 45555 78999999999999999999999999999999998876 4689999988752 24578888765543333
Q ss_pred ccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhh
Q 012529 212 DGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGII 291 (461)
Q Consensus 212 ~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~ 291 (461)
+ +|++||||||||||||++ +.||||||||||||++|.|++|+|+++|+||+++++. .+|.+.++.
T Consensus 106 ~--~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~~------------~~~~rity~ 170 (345)
T 3a5y_A 106 V--AGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC------------PAAESLSYQ 170 (345)
T ss_dssp H--TTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHCC------------CCCEEEEHH
T ss_pred H--cCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHcC------------CCCcEeeHH
Confidence 3 369999999999999999 8999999999999999999999999999999999861 123333444
Q ss_pred hhhhhhhcCCCccccHHHHHHHHHHhccccccccccc-ccCChHhhhchhh---hcc-cCCCeeeeeCCccCCccccccC
Q 012529 292 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG-CDLQSEHERYLTE---EAF-GGCPVIVSDYPKEIKAFYMRQN 366 (461)
Q Consensus 292 ~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g-~~l~~~~e~~l~e---~~~-~~~p~~i~~~P~~~~pf~~~~~ 366 (461)
+.+++.++.+.+.++++++.+++++.|.. .+.++ .++....|+++.+ +.+ ..+|+||+|||..++||++..+
T Consensus 171 ea~~~~~g~d~~~~~~~~l~~~~~~~g~~---~~~~~~~~~~~~~e~~l~~~ve~~lg~~~p~fv~dyP~~~~~~~~~~~ 247 (345)
T 3a5y_A 171 QAFLRYLEIDPLSADKTQLREVAAKLDLS---NVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASLAQIST 247 (345)
T ss_dssp HHHHHHTCCCTTCCC---------------------------HHHHHHHHHHTGGGSSSSSCEEEECCBGGGCTTBCBCS
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHcCCc---ccCCCcCCHhHHHHHHHHHHHHHHcCCCCEEEEECCChhhChhhCCCC
Confidence 55555545444455666666666665532 02344 4566667776643 223 2379999999999999986555
Q ss_pred CCccceeccccccCCceeeechhhhcccHHHHHHHHHHc-------CCCcccH-HHHHHHhccCCCCCccccccHHHHHH
Q 012529 367 DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-------KLNRDSY-WWYLDLRHYGSVPHAGFGLGFERLVQ 438 (461)
Q Consensus 367 ~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~-------~~~~~~~-~~yl~a~~~G~pP~gG~giGidRLvm 438 (461)
+++..+++|||+++|+ ||+||++|+|++++|+++++.. |++++.+ +|||+|++||+|||||||||||||+|
T Consensus 248 ~~~~~a~~fDL~~~G~-Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~~yl~al~yG~PPhgG~glGiDRLvm 326 (345)
T 3a5y_A 248 EDHRVAERFEVYYKGI-ELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVALGVDRLVM 326 (345)
T ss_dssp SCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHCCCSEEEEEEEHHHHHH
T ss_pred CCCCeEEEEEEEECCE-EEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCcEEEEcHHHHHH
Confidence 5556788999999998 9999999999999999999865 8888888 68999999999999999999999999
Q ss_pred HHcCCCCccccccCCCCC
Q 012529 439 FATGVENIRDAIPFPRTP 456 (461)
Q Consensus 439 ~l~g~~~Irdv~~FPr~~ 456 (461)
++||.+||||||+|||+.
T Consensus 327 ll~g~~~IRdVi~FPr~~ 344 (345)
T 3a5y_A 327 LALGAETLAEVIAFSVDR 344 (345)
T ss_dssp HHHTCSSGGGGSSSCTTT
T ss_pred HHcCCCcHheEecCCccc
Confidence 999999999999999984
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-65 Score=501.06 Aligned_cols=280 Identities=25% Similarity=0.416 Sum_probs=241.1
Q ss_pred cCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecC--------CCCCCCcceeeeecCCCcccccCCcc
Q 012529 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS--------DCEGAGEQFCVTTLIPSSREAAESPV 204 (461)
Q Consensus 133 ~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~--------~~eg~~~~F~v~~~~~~~~~~~~s~~ 204 (461)
+||++|+|++ +++++++||.+++++|+||.++||+||+||+|+.+ .+|| +++|.+++++. ..+|.+||+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~~~~~~-~~~L~~Spe 77 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEVEIYGV-KMRLTHSMI 77 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEEEETTE-EEEECSCSH
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEEEcCCC-CEEeccChH
Confidence 4899999999 99999999999999999999999999999999999 8888 88999887765 466777876
Q ss_pred ccCCCccccCcCcceeEEEecccccCC--CCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccc
Q 012529 205 DAIPKTKDGLIDWSQVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFF 282 (461)
Q Consensus 205 ~~l~~~~~~~~~~~rVfeI~~~FR~E~--~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~ 282 (461)
..+..+..+ ++.|||+||||||+|+ +++.||+|||||+|+|++|.|++|+|+++|++++++++.+.+..
T Consensus 78 ~~~~~l~~~--g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~------- 148 (294)
T 1nnh_A 78 LHKQLAIAM--GLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWT------- 148 (294)
T ss_dssp HHHHHHHHT--TCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHhhc--CccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhh-------
Confidence 543333332 5899999999999999 87789999999999999999999999999999999998875411
Q ss_pred cccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccc
Q 012529 283 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFY 362 (461)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~ 362 (461)
+. .+. .++. |+|++|.||++ + ||. .+|+ ++.. . .|+||+||| +|||
T Consensus 149 ~~--------~i~-~~~~-~~r~~y~ea~~---~----------~g~----~~er--~~~~-~-~P~~v~~~P---~pf~ 194 (294)
T 1nnh_A 149 GR--------EFP-KTKR-FEVFEYSEVLE---E----------FGS----DEKA--SQEM-E-EPFWIINIP---REFY 194 (294)
T ss_dssp SS--------CCC-CCSS-CEEEEHHHHHH---H----------TSS----HHHH--HHHC-S-SCEEEECCC---CCTT
T ss_pred cc--------ccc-cCCC-ceEeEHHHHHH---H----------hCC----hHhh--hhhc-C-CCEEEEcCC---hHHh
Confidence 10 011 1233 89999999985 2 332 3344 3332 3 799999999 9999
Q ss_pred cccCCCccceeccccccC-CceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCC-CCccccccHHHHHHHH
Q 012529 363 MRQNDDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFA 440 (461)
Q Consensus 363 ~~~~~~~~~~~~fdl~~~-G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~p-P~gG~giGidRLvm~l 440 (461)
++. |+..+++||+|++ |++||+||++|+|+++.|.++++..|++++.++|||+|++||+| ||||||||+|||+|++
T Consensus 195 ~~~--d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~~l~~l~~G~p~P~~G~glGieRL~mll 272 (294)
T 1nnh_A 195 DRE--VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFI 272 (294)
T ss_dssp BCE--ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHH
T ss_pred CCC--CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHHHHHHHhcCCCCCceEEEEcHHHHHHHH
Confidence 886 5678999999999 98999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCccccccCCCCCCCCC
Q 012529 441 TGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 441 ~g~~~Irdv~~FPr~~~~~~ 460 (461)
+|.+||||||+|||+++++.
T Consensus 273 ~g~~~Irdvi~Fp~~~~~~~ 292 (294)
T 1nnh_A 273 VGAKHIAEVQPFPRIPGIPA 292 (294)
T ss_dssp HTCSSGGGGCSSCCCTTSCC
T ss_pred hCCCCHHHEEeccCCCCccc
Confidence 99999999999999999973
|
| >12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-23 Score=198.14 Aligned_cols=277 Identities=14% Similarity=0.098 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHHHhh-----hCCcEEEecceeecCCCC------CCCcceeeeecC--CCcccccCCccccCCCcccc
Q 012529 147 VARVRNALAYATHKFFQ-----ENGFIWISSPIITASDCE------GAGEQFCVTTLI--PSSREAAESPVDAIPKTKDG 213 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~-----~~gF~EV~TPiL~~~~~e------g~~~~F~v~~~~--~~~~~~~~s~~~~l~~~~~~ 213 (461)
.++.....|+.+++||. +.|+++|..|+++....+ |..+|-.++... ........|...| ++....
T Consensus 4 ~~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKW-KR~aL~ 82 (330)
T 12as_A 4 AYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKW-KRQTLG 82 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTH-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHH-HHHHHH
Confidence 35667788999999999 899999999999985443 223443333321 1112233444332 111111
Q ss_pred CcCc---ceeEEEecccccCCC-CCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccch
Q 012529 214 LIDW---SQVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKG 289 (461)
Q Consensus 214 ~~~~---~rVfeI~~~FR~E~~-~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~ 289 (461)
..+| +.+|+-+++-|.++. .+.+|.-+|+|+|||......+..|+.++++++.|...+..... .+. ..+
T Consensus 83 ~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ik~tE~-~~~--~~y---- 155 (330)
T 12as_A 83 QHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEA-AVS--EEF---- 155 (330)
T ss_dssp HTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHHHHH-HHH--HHS----
T ss_pred hCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHHHHHHHH-HHH--HHh----
Confidence 1134 789999999996544 67999999999999999988899999999998888887764321 110 000
Q ss_pred hhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCC---ccccccC
Q 012529 290 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQN 366 (461)
Q Consensus 290 ~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~---pf~~~~~ 366 (461)
.+.+.+..++..+|.+|+.+. ++..-..+.|..+++.+ .+|||++.|..++ |.-.+..
T Consensus 156 ---~l~p~Lp~~i~fitsqeL~~~-------------YP~lt~keRE~~i~ke~---gaVFii~IG~~L~~g~~HD~RaP 216 (330)
T 12as_A 156 ---GLAPFLPDQIHFVHSQELLSR-------------YPDLDAKGRERAIAKDL---GAVFLVGIGGKLSDGHRHDVRAP 216 (330)
T ss_dssp ---CCCCCSCSSCEEEEHHHHHHH-------------SSSSCHHHHHHHHHHHH---SEEEEECCSSCCSSSCCSSCCCT
T ss_pred ---ccCcCCCCceEEEeHHHHHHH-------------cCCCChHHHHHHHHHhh---CCEEEEecCCccCCCCcCcCcCC
Confidence 111224456777787775543 33333445677777655 5999999997654 2222222
Q ss_pred CCccce---------ecccccc-C----CceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCC-CCCccccc
Q 012529 367 DDGRTV---------AAMDMLV-P----RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGS-VPHAGFGL 431 (461)
Q Consensus 367 ~~~~~~---------~~fdl~~-~----G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~-pP~gG~gi 431 (461)
+.+.+. ...||++ + +..||.++++| -+++.+.++++..|.+....-+|.+++..|- |++.|.||
T Consensus 217 DYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL~~~g~~er~~~~yh~~ll~g~LP~TiGGGI 295 (330)
T 12as_A 217 DYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDADTLKHQLALTGDEDRLELEWHQALLRGEMPQTIGGGI 295 (330)
T ss_dssp TTBCCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHHHHHHHHHHHTCTTGGGSHHHHHHHTTCSCCEEEEEE
T ss_pred CCCCccccccccccCccceEEEeccccCceeEEecceEE-eCHHHHHHHHHHcCCChhhccHHHHHHHcCCCCccccccc
Confidence 333455 6789998 3 55799999999 7999999999999988777777898877775 99999999
Q ss_pred cHHHHHHHHcCCCCcccccc
Q 012529 432 GFERLVQFATGVENIRDAIP 451 (461)
Q Consensus 432 GidRLvm~l~g~~~Irdv~~ 451 (461)
|.+||||+|++..+|-+|.+
T Consensus 296 GQSRLcmflL~k~HIGEVQ~ 315 (330)
T 12as_A 296 GQSRLTMLLLQLPHIGQVQA 315 (330)
T ss_dssp EHHHHHHHHHTCSCGGGTSC
T ss_pred cHHHHHHHHhccchhheeec
Confidence 99999999999999999976
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-21 Score=187.50 Aligned_cols=167 Identities=15% Similarity=0.160 Sum_probs=113.7
Q ss_pred cCCCCccEEEEEeEEEEeccCCCCCCCCcccCChhhhhcCccccCCCHHHHHHHHH-----HHHHHHHHHHHhhhCCcEE
Q 012529 95 SQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV-----RNALAYATHKFFQENGFIW 169 (461)
Q Consensus 95 ~~~~~~~~el~~~~i~vl~~~~~~~Pl~~~~~~~~~~r~~r~l~~R~~~~~~~l~~-----Rs~i~~~iR~ff~~~gF~E 169 (461)
.+++.+++||+|++++|||+|..++|++.+++ ...+++||||+|++.++++++. ++++.+.+|++|.++||.|
T Consensus 20 ~~~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~E 97 (290)
T 3qtc_A 20 GASAPALTKSQTDRLEVLLNPKDEISLNSGKP--FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLE 97 (290)
T ss_dssp ----CCCCHHHHHHHHHHCCTTCC----CCSC--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEE
T ss_pred ccCCCceEEEEhhhhhhhccCCCCCCCCcchh--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEE
Confidence 34556789999999999999987789876554 3366899999999999999999 9999999999999999999
Q ss_pred EecceeecCCCC------CCCccee-eeecCCCcccccCCccccCCCccc----cCcCcceeEEEecccccCCCCCCCCc
Q 012529 170 ISSPIITASDCE------GAGEQFC-VTTLIPSSREAAESPVDAIPKTKD----GLIDWSQVYTFGPTFRAENSNTSRHL 238 (461)
Q Consensus 170 V~TPiL~~~~~e------g~~~~F~-v~~~~~~~~~~~~s~~~~l~~~~~----~~~~~~rVfeI~~~FR~E~~~t~rHl 238 (461)
|.||+|++.... .....+. +.+++. ...+..+....+..... ...+..|+||||+|||+|+. +.+|+
T Consensus 98 V~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~-~~~~~ 175 (290)
T 3qtc_A 98 IKSPILIPLEYIERMGIDNDTELSKQIFRVDK-NFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHL 175 (290)
T ss_dssp ECCCSEEETHHHHHTTCCTTSSGGGGCCEETT-TEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSC-SSSCC
T ss_pred EECCceeeHHHHHhcCCCcCCchhhhheeeCC-CeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCC-CCcCc
Confidence 999999986531 1111111 112221 12222221111110000 01245799999999999976 67899
Q ss_pred cccccceeeeccCC--HHHHHHHHHHHHH
Q 012529 239 AEFWMIEPELAFAD--LKDDMACATAYLQ 265 (461)
Q Consensus 239 ~EFtmlE~e~a~~d--~~dlm~~~e~li~ 265 (461)
+||||+|+|+++.+ +.++..+++++++
T Consensus 176 ~Ef~ql~~~~~g~~~~f~elkg~le~ll~ 204 (290)
T 3qtc_A 176 EEFTMLVFWQMGSGCTRENLESIITDFLN 204 (290)
T ss_dssp SEEEEEEEEEESTTCCHHHHHHHHHHHHH
T ss_pred chheEEEEEEEcCChHHHHHHHHHHHHHH
Confidence 99999999999864 6666655555544
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-16 Score=152.60 Aligned_cols=60 Identities=22% Similarity=0.400 Sum_probs=48.8
Q ss_pred eeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccC-CCCCccccccHHHHHHHHcCCCCccccc
Q 012529 372 VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAI 450 (461)
Q Consensus 372 ~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G-~pP~gG~giGidRLvm~l~g~~~Irdv~ 450 (461)
..++|++++|. ||++|+.+.+..+. ++| .|||+|||||+|||+|+++|.+|||++.
T Consensus 218 ~~~~~l~~~~~-eig~~Gv~p~vl~~----------------------~~gi~~~~~gfglglerl~m~~~g~~~iR~~~ 274 (288)
T 3dsq_A 218 GDTVDVMKGDL-ELASGAMGPHFLDE----------------------KWEIFDPWVGLGFGLERLLMIREGTQHVQSMA 274 (288)
T ss_dssp CCCEEEEETTE-EEEEEEEESCTTTT----------------------TTTCCSCEEEEEEEHHHHHHHHHTCSCGGGGS
T ss_pred EEEEEEEeCCE-EEEEEEecHHHHHH----------------------hcCCCCCeEEEEECHHHHHHHHcCCchhhcCC
Confidence 45688889995 99999976654421 678 4799999999999999999999999987
Q ss_pred cCCC
Q 012529 451 PFPR 454 (461)
Q Consensus 451 ~FPr 454 (461)
.-.-
T Consensus 275 ~~~~ 278 (288)
T 3dsq_A 275 RSLS 278 (288)
T ss_dssp SCSS
T ss_pred CCcc
Confidence 5443
|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=135.59 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCC--CC----C-------CcceeeeecCCCc------------c-cc--cCCc
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDC--EG----A-------GEQFCVTTLIPSS------------R-EA--AESP 203 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg----~-------~~~F~v~~~~~~~------------~-~~--~~s~ 203 (461)
+.+++.||++|...||.||.+|.+.+... +. . .+.|.+. ++.+ . .+ +++|
T Consensus 104 ~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~--nP~s~~~~~~~~~~~~~~vLRt~tsp 181 (350)
T 1b7y_A 104 TLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLT--GEGFRLEGPLGEEVEGRLLLRTHTSP 181 (350)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEE--CSSCCCBCTTSCBCCSCEEECSSSTH
T ss_pred HHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEc--CccccccccccccccccceeeccchH
Confidence 47889999999999999999999976211 10 0 3344443 1100 0 01 1111
Q ss_pred cccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 204 VDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 204 ~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
. +.++.+....--|+||||+|||+|+. +.+|+|||+|||+++++. |+.+++..++.+++.+
T Consensus 182 ~--llr~l~~~~~piriFEiGrVFR~d~~-d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 182 M--QVRYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp H--HHHHHHHCCSSEEEEEEEEEECCCCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHhcCCCeeEEEeeeEEECCCC-CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 1 00111111112479999999999876 467999999999999886 6788888777766544
|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=120.69 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCC--C----CCC-------cceeeeecCCCcccccCCccccCCCcccc--CcC
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDC--E----GAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDG--LID 216 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e----g~~-------~~F~v~~~~~~~~~~~~s~~~~l~~~~~~--~~~ 216 (461)
+++.+.+|++|...||.||++|.+.+... + ... ++|.+. . ...+.++....+..+.+. ...
T Consensus 56 ~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~---e-~~vLRtsl~p~ll~~l~~N~~~~ 131 (294)
T 2rhq_A 56 TRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT---D-EILMRTHTSPVQARTMEKRNGQG 131 (294)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS---S-SEEECSSSHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEc---C-cceeeccCHHHHHHHHHhcCCCC
Confidence 57889999999999999999999876311 0 000 012211 0 011111111111111111 112
Q ss_pred cceeEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHHH
Q 012529 217 WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYV 267 (461)
Q Consensus 217 ~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--~d~~dlm~~~e~li~~i 267 (461)
--|+||||+|||+++. +.+|+|||+|||+++++ .|+.+++..++.+++.+
T Consensus 132 ~~riFEiG~Vfr~d~~-d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l 183 (294)
T 2rhq_A 132 PVKIICPGKVYRRDSD-DATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKL 183 (294)
T ss_dssp CEEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CccEEEEcCEEecCCC-CCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 4689999999998765 46799999999999998 57888888888877654
|
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.1e-10 Score=110.38 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCCC--CC-----------CcceeeeecCCCccccc--CCccccCCCccccCcC
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDCE--GA-----------GEQFCVTTLIPSSREAA--ESPVDAIPKTKDGLID 216 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~e--g~-----------~~~F~v~~~~~~~~~~~--~s~~~~l~~~~~~~~~ 216 (461)
+.+...||++|...||.|+.+|.+.+..-. .- .+.|.++ . ...+. ++|. +..+......
T Consensus 110 ~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~---e-~~vLRThtsp~--~lr~l~~~~~ 183 (327)
T 3pco_A 110 TRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFD---T-TRLLRTQTSGV--QIRTMKAQQP 183 (327)
T ss_dssp HHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSS---S-SCEECSCTHHH--HHHHHTTCCS
T ss_pred HHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeC---C-CceecccCCHH--HHHHHHhCCC
Confidence 467889999999999999999998653221 10 0122221 0 00011 1110 0000000101
Q ss_pred cceeEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHHHHHH
Q 012529 217 WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQYV 267 (461)
Q Consensus 217 ~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--~d~~dlm~~~e~li~~i 267 (461)
=-|+|++|+|||++ . +.+|+|+|+|+|..+.. .|+.++...++.+++.+
T Consensus 184 pirifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 184 PIRIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNF 234 (327)
T ss_dssp SCCBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred CeeEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 13799999999998 4 68999999999977653 35677766666666554
|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.3e-09 Score=108.37 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=33.9
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeecc--CCHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAY 263 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~--~d~~dlm~~~e~l 263 (461)
|+|+||+|||+|.. +.+|+|||+|+|..++. .++.+++..++.+
T Consensus 349 riFeiGrVFR~d~~-DatHlpeFhQlegl~~~~~v~f~dLKg~Le~~ 394 (508)
T 3l4g_A 349 KYFSIDRVFRNETL-DATHLAEFHQIEGVVADHGLTLGHLMGVLREF 394 (508)
T ss_dssp EEEEEEEEECCSCC-CSSSCSEEEEEEEEEEEESCCHHHHHHHHHHH
T ss_pred eEEEEccEEecCCC-CCCcCCeEEEEEEEEECCCCCHHHHHHHHHHH
Confidence 79999999999987 57999999999987653 2455555544443
|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.7e-05 Score=82.48 Aligned_cols=119 Identities=17% Similarity=0.120 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C--C------CCcceeeeecCCC--cccccCCcccc-----CC
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G------AGEQFCVTTLIPS--SREAAESPVDA-----IP 208 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g------~~~~F~v~~~~~~--~~~~~~s~~~~-----l~ 208 (461)
-.-.+++..|.+.+|+.|.+.||.||.||++.+..- . + +.+.|.++..+.. ...+...|... +.
T Consensus 41 P~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~ 120 (477)
T 1hc7_A 41 PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMW 120 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHH
Confidence 346778899999999999999999999999998542 1 1 2356766544310 11122222111 00
Q ss_pred C-ccccCcCc-ceeEEEecccccCCCCCC--CCccccccceeeeccCCHHHHHHHHHHHH
Q 012529 209 K-TKDGLIDW-SQVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACATAYL 264 (461)
Q Consensus 209 ~-~~~~~~~~-~rVfeI~~~FR~E~~~t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li 264 (461)
. ...+...+ -|+|+||+|||+|..... |- -||+|.|+|..+++.++....+..++
T Consensus 121 ~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~-REF~q~d~~~~~~~~~~ad~E~~~~l 179 (477)
T 1hc7_A 121 SKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRT-SEFLWQEGHTAHATREEAEEEVRRML 179 (477)
T ss_dssp HHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBC-SEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred HhhhhccccCCeeeEeecCEEeCCCCCCCccee-EEEEEccEEEEeCCHHHHHHHHHHHH
Confidence 0 00000011 379999999999954212 32 49999999999998777766666553
|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.1e-05 Score=82.80 Aligned_cols=120 Identities=12% Similarity=0.099 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--------CCCCcceeeeecCCCcccccCC---ccccCCCcc-c
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--------EGAGEQFCVTTLIPSSREAAES---PVDAIPKTK-D 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--------eg~~~~F~v~~~~~~~~~~~~s---~~~~l~~~~-~ 212 (461)
..-.+++..+.+.+++.|.++||.||.||+|..... ....+.|.++ + ...++... +...+.... .
T Consensus 169 p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--~-~~l~LrPt~e~~i~~~~~~~i~ 245 (425)
T 2dq3_A 169 GWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE--R-DNLYLIPTAEVPLTNLYREEIL 245 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT--T-TCCEECSSTHHHHHGGGTTEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEec--C-CeEEEcCCCcHHHHHHHHhhcc
Confidence 456778999999999999999999999999998541 1223455442 1 11112111 111111100 0
Q ss_pred cCcC-cceeEEEecccccCCCCCC--C----CccccccceeeeccCCHHHHHHHHHHHHHHHH
Q 012529 213 GLID-WSQVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFADLKDDMACATAYLQYVV 268 (461)
Q Consensus 213 ~~~~-~~rVfeI~~~FR~E~~~t~--r----Hl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~ 268 (461)
.... --|+|++|+|||+|.+... + -.-||+|+|++. |++-++..+..++++..+.
T Consensus 246 s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~~~~e~i~~~~ 307 (425)
T 2dq3_A 246 KEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYDELEKLVKDAE 307 (425)
T ss_dssp ETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHHH
T ss_pred ccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHHHHHHHHHHHH
Confidence 0001 2479999999999975211 1 124999999976 5655666656666665443
|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.3e-05 Score=79.87 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC-------C---CCCCcceeeeecCCCcccccCCccccCC--Cc-cc
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD-------C---EGAGEQFCVTTLIPSSREAAESPVDAIP--KT-KD 212 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-------~---eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~-~~ 212 (461)
.-.+++..+...+|+.|...||.||.||++.... + ....+.|.+...+ ...+...|....+ +. ..
T Consensus 34 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~--g~~l~LRpd~T~~~aR~~~~ 111 (344)
T 1z7m_A 34 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHE--GQSITLRYDFTLPLVRLYSQ 111 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTT--CCEEEECCCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCC--CCEEecCCCCcHHHHHHHHh
Confidence 4567888999999999999999999999998732 1 1233566553221 2222323321111 00 00
Q ss_pred cCc-CcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 213 GLI-DWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 213 ~~~-~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
... .--|.|+||+|||+|.+... +.-||+|+++|.-..+
T Consensus 112 ~~~~~P~rl~y~g~vfR~e~p~~g-R~REF~Q~g~ei~g~~ 151 (344)
T 1z7m_A 112 IKDSTSARYSYFGKIFRKEKRHKG-RSTENYQIGIELFGES 151 (344)
T ss_dssp CCSCCCEEEEEEEECCCCCC--------CCEEEEEEEESSC
T ss_pred cCCCCCeEEEEECcEEccCCCCCC-CcceeEEEEEEEEcCC
Confidence 000 12589999999999987533 5689999999986655
|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.3e-05 Score=83.03 Aligned_cols=118 Identities=16% Similarity=0.084 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC----CC----CCCcceeeeecCCCcccccCCc---cc--cCCCc
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD----CE----GAGEQFCVTTLIPSSREAAESP---VD--AIPKT 210 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~e----g~~~~F~v~~~~~~~~~~~~s~---~~--~l~~~ 210 (461)
.-.-.+++..|.+.+|+.|.+.||.||.||++.... ++ -+.+.|.+...+. ..+...| .. .+.+.
T Consensus 63 lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~~--~~~~LrPt~ee~t~~i~r~ 140 (458)
T 2i4l_A 63 LPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHK--RELLYGPTNEEMITEIFRA 140 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTTC--CEEEECSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCCC--CeEEECCCChHHHHHHHHH
Confidence 445688899999999999999999999999999843 11 1335666543222 1112222 00 00000
Q ss_pred -cccCcCc-ceeEEEecccccC-CCCCC-CCccccccceeeeccCCHHHHHHHHHHH
Q 012529 211 -KDGLIDW-SQVYTFGPTFRAE-NSNTS-RHLAEFWMIEPELAFADLKDDMACATAY 263 (461)
Q Consensus 211 -~~~~~~~-~rVfeI~~~FR~E-~~~t~-rHl~EFtmlE~e~a~~d~~dlm~~~e~l 263 (461)
......+ -|+|+||+|||+| ..+.. --.-||+|+|+|.-..+..++-..+..+
T Consensus 141 ~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~ 197 (458)
T 2i4l_A 141 YIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKM 197 (458)
T ss_dssp HCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHH
Confidence 0000011 3799999999999 33211 0236999999998665665554444433
|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1e-05 Score=82.47 Aligned_cols=118 Identities=15% Similarity=0.170 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC----CC----CCCcceeeeecCCCcccccCCcccc-----C-CCc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD----CE----GAGEQFCVTTLIPSSREAAESPVDA-----I-PKT 210 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~e----g~~~~F~v~~~~~~~~~~~~s~~~~-----l-~~~ 210 (461)
-.-.+++..|.+.+|+.|.+.||.||.||+|.... ++ -..+.|.++. +. ..+...|... + ...
T Consensus 27 P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d~-~~--~~~~LrP~~~~~~~~~~~~~ 103 (401)
T 1evl_A 27 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSS-EN--REYCIKPMNCPGHVQIFNQG 103 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEEE-TT--EEEEECSCSHHHHHHHHTSS
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEec-CC--ceEEEcCCCCHHHHHHHHhh
Confidence 34678889999999999999999999999999854 11 0224565322 11 1111122110 0 000
Q ss_pred cccCcCc-ceeEEEecccccCCC--CCC--CCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 211 KDGLIDW-SQVYTFGPTFRAENS--NTS--RHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 211 ~~~~~~~-~rVfeI~~~FR~E~~--~t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
......+ -|+|+||+|||+|.+ ... | .-||+|.|+|. |.+.+++....++++...
T Consensus 104 ~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R-~reF~q~d~~~-f~~~~~~~~e~~e~i~~~ 163 (401)
T 1evl_A 104 LKSYRDLPLRMAEFGSCHRNEPSGSLHGLMR-VRGFTQDDAHI-FCTEEQIRDEVNGCIRLV 163 (401)
T ss_dssp CCBGGGCSEEEEEEEEEECCCCGGGCBTTTB-CSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred hhhhhhCChhhccccceecCCCCcccccccc-cCcEEecceEE-eCCHHHHHHHHHHHHHHH
Confidence 0000011 389999999999986 222 2 36999999994 777666655544555433
|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.4e-05 Score=82.83 Aligned_cols=124 Identities=19% Similarity=0.164 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHh-hhCCcEEEecceeecCCC----C----CCCcceeeeecCCCcccccCCcccc-----CCCc
Q 012529 145 GAVARVRNALAYATHKFF-QENGFIWISSPIITASDC----E----GAGEQFCVTTLIPSSREAAESPVDA-----IPKT 210 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff-~~~gF~EV~TPiL~~~~~----e----g~~~~F~v~~~~~~~~~~~~s~~~~-----l~~~ 210 (461)
-.-.+++..|.+.+|+.+ .+.||.||.||+|..... + -..+.|.++..+.....+...|... +...
T Consensus 61 P~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~ 140 (460)
T 3uh0_A 61 PNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGK 140 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHh
Confidence 456888999999999999 999999999999987431 1 1224565542210011111122110 0000
Q ss_pred -cccCcCc-ceeEEEecccccCCCC--CC--CCccccccceeeeccCCHHHHHHHHHHHHHHHHHH
Q 012529 211 -KDGLIDW-SQVYTFGPTFRAENSN--TS--RHLAEFWMIEPELAFADLKDDMACATAYLQYVVRY 270 (461)
Q Consensus 211 -~~~~~~~-~rVfeI~~~FR~E~~~--t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~ 270 (461)
......+ -|+|++|+|||+|.+. .. | .-||+|.|++. |++-++..+.+++++..+..-
T Consensus 141 ~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R-~ReF~q~d~~~-f~~~e~~~~e~~~~i~~~~~~ 204 (460)
T 3uh0_A 141 KDRSYNELPLRFSDFSPLHRNEASGALSGLTR-LRKFHQDDGHI-FCTPSQVKSEIFNSLKLIDIV 204 (460)
T ss_dssp SCCBGGGCSEEEEECCEEECCCCTTTCBTTTB-CSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHH
T ss_pred ccccccccCeEEEEecCeeeCCCCCCCCCcee-eeeEEEeeEEE-EcCHHHHHHHHHHHHHHHHHH
Confidence 0000011 3799999999999772 11 2 24999999996 777666666666666554443
|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=3.4e-05 Score=79.32 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CC-CCCcceeeeecCCCcccccCCccccCC------Cccc
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD------CE-GAGEQFCVTTLIPSSREAAESPVDAIP------KTKD 212 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~e-g~~~~F~v~~~~~~~~~~~~s~~~~l~------~~~~ 212 (461)
.-.+++..|.+.+|+-|...||.||.||++.... ++ ...+.|.+...+. ..+...|....+ ...+
T Consensus 18 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g--~~l~LrPd~t~~~aR~~~~~~~ 95 (434)
T 1wu7_A 18 EDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGG--REVTLIPEATPSTVRMVTSRKD 95 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTS--CEEEECSCSHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCC--CEEEeCCCChHHHHHHHHhcCC
Confidence 4577889999999999999999999999999842 11 1235676543221 222333321110 0111
Q ss_pred cCcCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 213 GLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 213 ~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
. ..--|.|+||+|||+|.+...| .-||+|+++|.-..+
T Consensus 96 ~-~lP~rl~~~g~vfR~erp~~gR-~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 96 L-QRPLRWYSFPKVWRYEEPQAGR-YREHYQFNADIFGSD 133 (434)
T ss_dssp C-CSSEEEEECCEEECCCCSCSSC-CSEEEEEEEEEESCC
T ss_pred C-CCCeEEEEEcCeecCCCCCCCC-ccceEEeeEEEEcCC
Confidence 0 0124899999999999775444 579999999986555
|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=3.8e-05 Score=81.82 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC-----CCcceeeeecCCCcccccCCcccc-----CCC-
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDA-----IPK- 209 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~~~~~~s~~~~-----l~~- 209 (461)
.-.-.+++..|.+.+|+.|.+.||.||.||+|....- .| ..+.|.++..+. ..+...|... +..
T Consensus 43 lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~~--~~~~LrP~~~~~~~~~~~~ 120 (572)
T 2j3l_A 43 LPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRND--RDYILGPTHEETFTELIRD 120 (572)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTTC--CEEEECSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecCCC--CeEEEccccHHHHHHHHHh
Confidence 3456888999999999999999999999999998531 01 235666543221 1112222110 000
Q ss_pred ccccCcCc-ceeEEEecccccCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHH
Q 012529 210 TKDGLIDW-SQVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAY 263 (461)
Q Consensus 210 ~~~~~~~~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~l 263 (461)
.......+ -|+|+||+|||+|.+ + +| .-||+|.|+|.-..+-.++...++.+
T Consensus 121 ~~~s~~~lP~r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~ 177 (572)
T 2j3l_A 121 EINSYKRLPLNLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHADEASLDQSYRDY 177 (572)
T ss_dssp HCCBGGGCCEEEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred hccChhhcCHhhheecCeeccCcC-c-ccCccccceeEEeeeEEEcCCHHHHHHHHHHH
Confidence 00000011 389999999999987 2 22 25999999998666666655555543
|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=3.4e-05 Score=80.74 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CC--------CCcceeeeecCCC--cccccCCccc-----cCC
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EG--------AGEQFCVTTLIPS--SREAAESPVD-----AIP 208 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg--------~~~~F~v~~~~~~--~~~~~~s~~~-----~l~ 208 (461)
-.-.+++..|.+.+|+.|.+ ||.||.||+|.+... .+ +.+.|.++..+.. ...+...|.. .+.
T Consensus 68 P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~ 146 (501)
T 1nj1_A 68 PHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHH
Confidence 44677888999999999999 999999999998431 11 2467776543200 0111112211 010
Q ss_pred Cc-cccCcCc-ceeEEEecccccCCCCC-C--CCccccc-cceeeeccCCHHHHHHHHHHHHHH
Q 012529 209 KT-KDGLIDW-SQVYTFGPTFRAENSNT-S--RHLAEFW-MIEPELAFADLKDDMACATAYLQY 266 (461)
Q Consensus 209 ~~-~~~~~~~-~rVfeI~~~FR~E~~~t-~--rHl~EFt-mlE~e~a~~d~~dlm~~~e~li~~ 266 (461)
.. ......+ -|+|++|+|||+|..++ . | .-||+ |.|++..+++.++....+++++..
T Consensus 147 ~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R-~REF~~q~e~~~~~~~~e~a~~e~~~~l~~ 209 (501)
T 1nj1_A 147 ALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIR-VREITTFKEAHTIHATASEAEEQVERAVEI 209 (501)
T ss_dssp HHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTB-CSEEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HhhhcccccCCEEEEeecCEeeCCCCCCCCCce-eEEEeeeeeEEEEECCHHHHHHHHHHHHHH
Confidence 00 0000012 37999999999997621 1 2 13999 999999889887777766555543
|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=1.6e-05 Score=81.44 Aligned_cols=104 Identities=16% Similarity=0.167 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-----CC-----CCcceeeeecCCCcccccCCccccCC--C----
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-----EG-----AGEQFCVTTLIPSSREAAESPVDAIP--K---- 209 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-----eg-----~~~~F~v~~~~~~~~~~~~s~~~~l~--~---- 209 (461)
.-.+++..+.+.+|+.|.++||.||.||+|..... ++ ..+.|.+...+. ..+...|....+ .
T Consensus 14 ~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g--~~~~Lrp~~t~~~~r~~~~ 91 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGD--RSITLRPEGTAAVVRSYIE 91 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHH--CCEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCC--CEEEeCCCChHHHHHHHHh
Confidence 45778899999999999999999999999998431 11 124555422111 111112211100 0
Q ss_pred cccc--CcCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 210 TKDG--LIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 210 ~~~~--~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
.... ...--|+|++|+|||+|.+.. -+.-||+|+|+|.-..+
T Consensus 92 ~~~~~~~~lP~r~~~~g~vfR~E~~~~-gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 92 HKMQGNPNQPIKLYYNGPMFRYERKQK-GRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp TTGGGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCC
T ss_pred ccccccCCCCeEEEEecCEeecCCCcC-CCcccEEEeeEEEECCC
Confidence 0000 001248999999999997643 34679999999986654
|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
Probab=97.79 E-value=3.1e-05 Score=79.28 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---C-CC------CcceeeeecCCCcccccCCccccCC--Cc-cc
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIP--KT-KD 212 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---e-g~------~~~F~v~~~~~~~~~~~~s~~~~l~--~~-~~ 212 (461)
.-.+++..|.+.+|+-|...||.||.||++..... . |. .+.|.+...+ ...+...|....+ +. ..
T Consensus 15 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~--g~~l~Lrpd~t~~~ar~~~~ 92 (421)
T 1h4v_B 15 KELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRG--GRSLTLRPEGTAAMVRAYLE 92 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCC--CCEEeeCCcchHHHHHHHHh
Confidence 35678889999999999999999999999987431 1 11 2556553222 2223333321111 00 00
Q ss_pred cC----cCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 213 GL----IDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 213 ~~----~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
.. ..--|.|+||++||+|.+... +.-||+|+++|.-..+
T Consensus 93 ~~~~~~~lP~rl~~~g~vfR~e~p~~g-R~REf~Q~g~e~~g~~ 135 (421)
T 1h4v_B 93 HGMKVWPQPVRLWMAGPMFRAERPQKG-RYRQFHQVNYEALGSE 135 (421)
T ss_pred ccccccCCCeEEEEecCeecCCCCCCC-CcccEEEccEEEECCC
Confidence 00 012489999999999977544 4579999999986554
|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.9e-05 Score=82.01 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeec------CCCCCCCc-ceeeeec---CC----------CcccccCCcc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITA------SDCEGAGE-QFCVTTL---IP----------SSREAAESPV 204 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~------~~~eg~~~-~F~v~~~---~~----------~~~~~~~s~~ 204 (461)
-.-.+++..+...+|+.|..+||.||.||++.. + ++...+ .|.+... +. ....+...|.
T Consensus 23 P~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd 101 (465)
T 3net_A 23 PSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-GNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFD 101 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-GCC--CBEEEEEEEC----------------CCEEECSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-CCCCccceEEEecccccccccccccccCCCCCEEEeCCC
Confidence 345677899999999999999999999999943 3 333345 7776443 10 0112222222
Q ss_pred ccCCC--cc-c--cC-cCcceeEEEecccccCCCCCCCCccccccceeeeccC
Q 012529 205 DAIPK--TK-D--GL-IDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 251 (461)
Q Consensus 205 ~~l~~--~~-~--~~-~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~ 251 (461)
...+. .. . .. ..--|.|++|||||.|.+... +.-||+|+++|.-..
T Consensus 102 ~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~g-r~Ref~Q~g~ei~G~ 153 (465)
T 3net_A 102 QTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDG-RFRQFRQCDIDVVGR 153 (465)
T ss_dssp SHHHHHHHHHHHGGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECS
T ss_pred ChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCC-CcceeEEeeEEEECC
Confidence 21110 00 0 00 012389999999999987544 457999999998655
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=2.6e-05 Score=84.30 Aligned_cols=121 Identities=11% Similarity=0.120 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC----CC----CCCcceeeeecCCCcccccCCccccC-----C-C
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD----CE----GAGEQFCVTTLIPSSREAAESPVDAI-----P-K 209 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~e----g~~~~F~v~~~~~~~~~~~~s~~~~l-----~-~ 209 (461)
.-.-.+++..|.+.+|+.|.+.||.||.||+|.... ++ -..+.|.+...+. ...+...|.... . .
T Consensus 267 lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~~-~~~~~LrP~~~~~~~~~~~~ 345 (645)
T 1nyr_A 267 LPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDE-TESMVLRPMNCPHHMMIYAN 345 (645)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETT-TEEEEECSSSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEecCC-CeEEEeCCCCCHHHHHHHHh
Confidence 455688999999999999999999999999999853 11 1234555422221 011222221110 0 0
Q ss_pred ccccCcCc-ceeEEEecccccCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 210 TKDGLIDW-SQVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 210 ~~~~~~~~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
.......+ -|+|+||+|||+|.+. .+| .-||||.|+|. |++.+++.+...+++..+
T Consensus 346 ~~~syr~LPlrl~~~g~~fR~E~~~-~~~GL~R~ReF~Q~d~~~-f~~~~~~~d~~~e~i~~~ 406 (645)
T 1nyr_A 346 KPHSYRELPIRIAELGTMHRYEASG-AVSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVNMI 406 (645)
T ss_dssp SCCBGGGCCEEEEEEEEEECCCCTT-TCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred hhhhccCCCeEEEEeccEEecCCCc-cccCcceeeeEEEccEEE-EcCHHHHHHHHHHHHHHH
Confidence 00000011 3799999999999883 333 26999999998 777666655555555433
|
| >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=3.5e-05 Score=79.56 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CCC-------CcceeeeecCCCcccccCC---ccccCCCc-cc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGA-------GEQFCVTTLIPSSREAAES---PVDAIPKT-KD 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-------~~~F~v~~~~~~~~~~~~s---~~~~l~~~-~~ 212 (461)
..-.+++.++++.+++.+.++||.||.||.|..... ++. .+.|.++..+ ...+|... +...+... ..
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~~-~~~~L~PTaE~~l~~l~~~~i~ 283 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDG-DKKYLIATSEMPIAAYHRGRWF 283 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSS-SCEEECSSTHHHHHHHTTTCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecCC-cceEEeccCcHHHHHHHhcccc
Confidence 457889999999999999999999999999998543 222 2566654211 12222211 00011110 00
Q ss_pred cCcCc-ceeEEEecccccCC-CCC-------CCCccccccceeeeccCCHHH--HHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAEN-SNT-------SRHLAEFWMIEPELAFADLKD--DMACATAYLQYV 267 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~-~~t-------~rHl~EFtmlE~e~a~~d~~d--lm~~~e~li~~i 267 (461)
....+ -|+|++++|||+|- +.+ +-| ||+|.|.+. |+.-++ ..+..++++...
T Consensus 284 sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~Rvr--qF~kvE~~~-f~~pe~~~s~~e~e~~~~~~ 346 (484)
T 3lss_A 284 TELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVH--QFDKIEQFV-VCSPRQEESWRHLEDMITTS 346 (484)
T ss_dssp SCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCS--EEEEEEEEE-EECSSTTHHHHHHHHHHHHH
T ss_pred chhhCCeeEEeecCccCCCCCcCCcccCCcceee--eEEEEEEEE-EeCcchHHHHHHHHHHHHHH
Confidence 00011 26999999999996 321 224 999999985 665444 666666666543
|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=3.4e-05 Score=79.02 Aligned_cols=104 Identities=14% Similarity=0.223 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---C-CC------CcceeeeecCCCcccccCCccccCC--Cc-c-
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIP--KT-K- 211 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---e-g~------~~~F~v~~~~~~~~~~~~s~~~~l~--~~-~- 211 (461)
.-.+++..|.+.+|+-|...||.||.||++..... . |. .+.|.+...+. ..+...|....+ +. .
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g--~~l~Lrpd~t~~~aR~~~~ 93 (423)
T 1htt_A 16 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNG--DSLTLRPEGTAGCVRAGIE 93 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTS--CEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCC--CEEEeCCCchHHHHHHHHh
Confidence 35778899999999999999999999999997431 1 11 25676543222 223333321111 00 0
Q ss_pred cc--CcCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 212 DG--LIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 212 ~~--~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
.. ...--|.|+||+|||+|.+... +.-||+|+++|.-..+
T Consensus 94 ~~~~~~~P~rl~~~g~vfR~e~p~~g-R~Ref~Q~d~e~~g~~ 135 (423)
T 1htt_A 94 HGLLYNQEQRLWYIGPMFRHERPQKG-RYRQFHQLGCEVFGLQ 135 (423)
T ss_dssp HTCSTTCCEEEEEEEEEECCCCCCSS-CCSEEEEEEEEEESCC
T ss_pred cccccCCCeEEEEEcCEecCCCCCCC-ccceeEEeeEEEECCC
Confidence 00 0012489999999999977544 4579999999986655
|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=6.3e-05 Score=77.90 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC-----CC---C-CCcceeeeecCCC--cccccCCcccc-----CC
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD-----CE---G-AGEQFCVTTLIPS--SREAAESPVDA-----IP 208 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-----~e---g-~~~~F~v~~~~~~--~~~~~~s~~~~-----l~ 208 (461)
-.-.+++..|.+.+|+.|.+.||.||.||++.+.. ++ + +.+.|.++..+.. ...+...|... +.
T Consensus 35 P~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~ 114 (459)
T 1nj8_A 35 PYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMM 114 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHH
Confidence 44677889999999999999999999999998743 11 1 2356776543210 11122222111 00
Q ss_pred C-ccccCcCc-ceeEEEecccccCCC-CCC--CCccccc-cceeeeccCCHHHHHHHHHHHHH
Q 012529 209 K-TKDGLIDW-SQVYTFGPTFRAENS-NTS--RHLAEFW-MIEPELAFADLKDDMACATAYLQ 265 (461)
Q Consensus 209 ~-~~~~~~~~-~rVfeI~~~FR~E~~-~t~--rHl~EFt-mlE~e~a~~d~~dlm~~~e~li~ 265 (461)
. ...+...+ -|+|+||+|||+|.+ ... |- -||+ |.|.+..+++.++.....++++.
T Consensus 115 ~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~-REF~qq~d~~~~~~~~~~a~~e~~~~i~ 176 (459)
T 1nj8_A 115 KLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRL-REIMTFKEAHTAHSTKEEAENQVKEAIS 176 (459)
T ss_dssp HTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBC-SBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHhhhhcccCCeEEEEEccEecCccCCCCCceEe-eeeeccCcEEEEECCHHHHHHHHHHHHH
Confidence 0 00010011 279999999999976 222 22 4999 99999988887777665544444
|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.69 E-value=5.3e-05 Score=76.31 Aligned_cols=103 Identities=13% Similarity=0.038 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCC-----CC-CC-CcceeeeecCCCcccccCCccccCC--Ccc-c---c
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASD-----CE-GA-GEQFCVTTLIPSSREAAESPVDAIP--KTK-D---G 213 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-----~e-g~-~~~F~v~~~~~~~~~~~~s~~~~l~--~~~-~---~ 213 (461)
-.+++..+...+|+.|..+||.||.||++.... ++ .. .+.|.+...+ ...+...|....+ +.. . .
T Consensus 36 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~--g~~l~LRpd~T~~~aR~~~~~~~~ 113 (373)
T 3rac_A 36 FAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGG--GDAVALRPEMTPSIARMAAPRVAA 113 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCS--SSCEEECSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCC--CCEEEECCcCHHHHHHHHHhcccc
Confidence 467788999999999999999999999998632 11 12 3555442211 1222222221111 000 0 0
Q ss_pred CcCcceeEEEecccccCCC------CCCCCccccccceeeeccCC
Q 012529 214 LIDWSQVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 214 ~~~~~rVfeI~~~FR~E~~------~t~rHl~EFtmlE~e~a~~d 252 (461)
...--|.|++|+|||+|.+ ... +.-||+|+++|.-..+
T Consensus 114 ~~~P~r~~y~g~vfR~e~~g~~~~~~~g-R~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 114 GRTPIRWCYCERVYRRTDDPASLSWASG-KAAESTQVGIERIGEE 157 (373)
T ss_dssp TCCCCEEEEEEEEEECC-------------CEEEEEEEEEECSSC
T ss_pred CCCCeEEEEEcceEccCCCcccccccCC-ccceeEEeeeEEECCC
Confidence 0113589999999999976 333 4579999999985443
|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00012 Score=74.55 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=27.5
Q ss_pred cceeEEEecccccCCCCCCCCccccccceeeecc
Q 012529 217 WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 250 (461)
Q Consensus 217 ~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~ 250 (461)
..|+|++|.|||.+.. +..|.|+|.|+|--..|
T Consensus 132 ~~k~~~~G~VyR~D~~-da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 132 LDAFLVVGDVYRRDQI-DSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp CSEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEE
T ss_pred CCCEEEeeeEEeccch-hhhhhHHhcCCCcEEEE
Confidence 4599999999999977 58999999999954433
|
| >4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00012 Score=76.60 Aligned_cols=122 Identities=17% Similarity=0.088 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C---C-----CCcceeeeecCCCc--ccccCCcccc-----CC
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E---G-----AGEQFCVTTLIPSS--REAAESPVDA-----IP 208 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e---g-----~~~~F~v~~~~~~~--~~~~~s~~~~-----l~ 208 (461)
-.-.+++..|.+.+++.+.+.||.||.||+|.+... + | .-+.|.++..+... ..+...|... ++
T Consensus 58 P~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~ 137 (519)
T 4hvc_A 58 PWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAY 137 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHH
Confidence 346788899999999999999999999999976431 1 2 12456554332110 0111122110 00
Q ss_pred Cc-cccCcCc-ceeEEEecccccCCCCC-C--CCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 209 KT-KDGLIDW-SQVYTFGPTFRAENSNT-S--RHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 209 ~~-~~~~~~~-~rVfeI~~~FR~E~~~t-~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
.. ......+ -|+|++|+|||+|-+.+ . | .-||+|.|.+..|++.++..+.+++++...
T Consensus 138 ~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R-~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~ 200 (519)
T 4hvc_A 138 AKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLR-TREFLWQEGHSAFATMEEAAEEVLQILDLY 200 (519)
T ss_dssp HHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTB-CSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HhhccccccCCeEEEEEcCeeeCCCCCCCCCcc-eeEEEEeeEEEEecCHHHHHHHHHHHHHHH
Confidence 00 0000011 37999999999994421 1 2 139999999999999888888877766543
|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.67 E-value=9.1e-05 Score=75.28 Aligned_cols=105 Identities=12% Similarity=0.057 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC------CCCCcceeeeecCCCcccccCCccccCC--Ccc-c---
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIP--KTK-D--- 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~------eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~-~--- 212 (461)
-.-.+++..+...+|+.|..+||.||.||++..... ....+.|.+...+ ...+...|....+ +.. .
T Consensus 21 P~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~--g~~l~LRpd~T~~~aR~~~~~~~ 98 (400)
T 3od1_A 21 PEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQ--GNTLVLRPDMTAPIARLVASSLK 98 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTT--SCEEEECSCSHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCC--CCEEEECCCCHHHHHHHHHhhcc
Confidence 345678889999999999999999999999976432 1223566553222 1222323322111 000 0
Q ss_pred cCcCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 213 GLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 213 ~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
....--|.|++|+|||+|.+... +.-||+|+++|.-..+
T Consensus 99 ~~~~P~r~~y~g~vfR~e~~~~g-R~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 99 DRAYPLRLAYQSNVYRAQQNEGG-KPAEFEQLGVELIGDG 137 (400)
T ss_dssp SSCSCEEEEEEEEEECCCC---C-CCSEEEEEEEEEESCC
T ss_pred cCCCCeEEEEEcCEEeCCCCCCC-CCCccEEeEEEEECCC
Confidence 00012489999999999987544 4579999999986554
|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0002 Score=74.46 Aligned_cols=123 Identities=14% Similarity=0.069 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC----C----CCC-cceeeeecCCCcccccCC---ccccCCCc-
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----E----GAG-EQFCVTTLIPSSREAAES---PVDAIPKT- 210 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----e----g~~-~~F~v~~~~~~~~~~~~s---~~~~l~~~- 210 (461)
...-.++..++++.+++.+.++||.||.||.|..... + -.. +.|.++.-+....+|... +...+...
T Consensus 215 ~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~ 294 (501)
T 1wle_A 215 RGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDH 294 (501)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTE
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhc
Confidence 3456888899999999999999999999999998432 1 122 566653211111222111 00000000
Q ss_pred cccCcCc-ceeEEEecccccCCC-----C--CCCCccccccceeeeccCCH-HHHHHHHHHHHHHHH
Q 012529 211 KDGLIDW-SQVYTFGPTFRAENS-----N--TSRHLAEFWMIEPELAFADL-KDDMACATAYLQYVV 268 (461)
Q Consensus 211 ~~~~~~~-~rVfeI~~~FR~E~~-----~--t~rHl~EFtmlE~e~a~~d~-~dlm~~~e~li~~i~ 268 (461)
......+ -|+|++++|||+|-. + -+.| ||+|.|.+.--.+. ++..+..++++....
T Consensus 295 i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~Rvh--qF~kvE~~~f~~pe~e~s~~~~e~~l~~~~ 359 (501)
T 1wle_A 295 SVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVH--HFTKVEMFGVTGPGLEQSSELLEEFLSLQM 359 (501)
T ss_dssp EEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCS--EEEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCcccCCeeEEeccCcccCCCCCCCCCcCceeee--eeeeeeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 0000011 269999999999955 1 1234 99999998743343 688887777775543
|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0002 Score=73.13 Aligned_cols=118 Identities=15% Similarity=0.204 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C--C-----CCcceeeeecCCCcccccCC---ccccCCCcc-c
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAES---PVDAIPKTK-D 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~~s---~~~~l~~~~-~ 212 (461)
-.-.+++..|.+.+++.+.++||.||.||+|..... . | ..+.|.++ + ...++... +...+..-. .
T Consensus 163 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d-~~l~L~Pt~e~~~~~~~~~~~~ 239 (421)
T 1ses_A 163 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--E-TDLYLTGTAEVVLNALHSGEIL 239 (421)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBT--T-SSEEECSSTHHHHHHTTTTCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEc--C-CeEEEeecCcHHHHHHhccccc
Confidence 346788899999999999999999999999987432 1 1 12344432 1 11111110 000111000 0
Q ss_pred cCcCc-ceeEEEecccccCCC------CC--CCCccccccceeeeccCC-HHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENS------NT--SRHLAEFWMIEPELAFAD-LKDDMACATAYLQYV 267 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~------~t--~rHl~EFtmlE~e~a~~d-~~dlm~~~e~li~~i 267 (461)
....+ -|+|++|+|||+|-+ ++ +. -||+|+|++..-.. .++..+..++++...
T Consensus 240 s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~--rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~ 302 (421)
T 1ses_A 240 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRV--HQFHKVEQYVLTEASLEASDRAFQELLENA 302 (421)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSC--SEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred CchhCCEEEEecCCeecCCccccCcCCCCCeee--eeeeeeeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 00011 279999999999952 12 22 49999998874333 377766666666544
|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=97.62 E-value=6.8e-05 Score=78.39 Aligned_cols=125 Identities=16% Similarity=0.125 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC------CCcceeeeecCCC--cccccCCccc-----cC
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLIPS--SREAAESPVD-----AI 207 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg------~~~~F~v~~~~~~--~~~~~~s~~~-----~l 207 (461)
.-.-.+++..|.+.+|+.|.+.||.||.||+|.+... +. +.+.|.++..+.. ...+...|.. .+
T Consensus 51 lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~ 130 (518)
T 3ial_A 51 RPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSM 130 (518)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHH
Confidence 3556788999999999999999999999999987541 11 2356776543210 0111112211 00
Q ss_pred CCc-cccCcCc-ceeEEEecccccCC-CCCC-CCccccccceeeeccCCHHHHHHHHHHHHHHHH
Q 012529 208 PKT-KDGLIDW-SQVYTFGPTFRAEN-SNTS-RHLAEFWMIEPELAFADLKDDMACATAYLQYVV 268 (461)
Q Consensus 208 ~~~-~~~~~~~-~rVfeI~~~FR~E~-~~t~-rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~ 268 (461)
... ..+...+ -|+|++++|||+|- .... --.-||+|.|.+...++.+++.+.+++++....
T Consensus 131 ~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~ 195 (518)
T 3ial_A 131 FSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVID 195 (518)
T ss_dssp HHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHH
Confidence 000 0000011 37999999999993 3111 012499999999976898888888887775433
|
| >3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A | Back alignment and structure |
|---|
Probab=97.57 E-value=8.4e-05 Score=76.72 Aligned_cols=121 Identities=13% Similarity=0.133 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C--C-----CCcceeeeecCCCccccc-CC--ccccCCCc-cc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAA-ES--PVDAIPKT-KD 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~-~s--~~~~l~~~-~~ 212 (461)
..-.+++.++++.+++.+.++||.||.||.|..... + | ..+.|.++..+. ..++. ++ |...+... ..
T Consensus 182 p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~~~-~~~LipTaE~pl~~l~~~ei~ 260 (485)
T 3qne_A 182 NYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGED-EKYLIATSEQPISAYHAGEWF 260 (485)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEETTE-EEEECSSTHHHHHHHTTTCEE
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCCCC-eEEEeccccHHHHHHHhcccc
Confidence 357788999999999999999999999999998542 1 1 235677643111 11221 11 11111110 00
Q ss_pred c--CcCc-ceeEEEecccccCCCC------CCCCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 213 G--LIDW-SQVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 213 ~--~~~~-~rVfeI~~~FR~E~~~------t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
. ...+ -|+|++++|||+|-.- +---.-||+|.|.+. |+.-++..+..++++...
T Consensus 261 ~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe~s~~e~e~ml~~~ 323 (485)
T 3qne_A 261 ESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPEKSWEEFDRMIGCS 323 (485)
T ss_dssp SSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred ccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHHHHHHHHHHHHHHH
Confidence 0 0011 2699999999999641 101123999999986 677777777777776544
|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.56 E-value=6.7e-05 Score=77.90 Aligned_cols=105 Identities=14% Similarity=0.218 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CCC----CCcceeeeecCCCcccccCCccccCC--Cc-cc
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD------CEG----AGEQFCVTTLIPSSREAAESPVDAIP--KT-KD 212 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg----~~~~F~v~~~~~~~~~~~~s~~~~l~--~~-~~ 212 (461)
.-.+++..|...+|+.|..+||.||.||++.... ++. ..+.|.+...+. ...+...|....+ +. ..
T Consensus 44 ~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~-g~~l~LRPd~t~~~ar~~~~ 122 (467)
T 4e51_A 44 QDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALN-GENLTLRPENTAAVVRAAIE 122 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTT-CCEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCC-CCEEEeCcccHHHHHHHHHH
Confidence 4577889999999999999999999999998743 220 125666532220 1222222221111 00 00
Q ss_pred ---cCcCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 213 ---GLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 213 ---~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
....--|.|++|+|||+|.+... +.-||+|+++|.-..+
T Consensus 123 ~~~~~~lP~r~~~~g~vfR~E~~~~g-R~ReF~Q~d~ei~g~~ 164 (467)
T 4e51_A 123 HNMLYDGPKRLWYIGPMFRHERPQRG-RYRQFHQVGVEALGFA 164 (467)
T ss_dssp TTTTTTSCEEEEEEEEEECCCCC----CCSEEEEEEEEEETCC
T ss_pred cccccCCCEEEEEEccEEccCCCCCC-CcCceEEEEEEEEeCC
Confidence 00012489999999999987544 4579999999985443
|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00016 Score=74.85 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecC------CCCCCCcceeeeecCCCcccccCCccccCC--Cc-cccCc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITAS------DCEGAGEQFCVTTLIPSSREAAESPVDAIP--KT-KDGLI 215 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~------~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~-~~~~~ 215 (461)
-.-.+++..|...+|+.|..+||.||.||++... .++...+.|.+.. .....+...|....+ +. .+...
T Consensus 25 P~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D--~~g~~l~LRPd~T~~~aR~~~~~~~ 102 (464)
T 4g84_A 25 PRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKD--QGGELLSLRYDLTVPFARYLAMNKL 102 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCC--CSSCCEEECSCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEEC--CCCCEEEeCCcCcHHHHHHHHhcCC
Confidence 4467888999999999999999999999999653 2222234454322 222223333322111 00 00000
Q ss_pred CcceeEEEecccccCCCCCC-CCccccccceeeecc
Q 012529 216 DWSQVYTFGPTFRAENSNTS-RHLAEFWMIEPELAF 250 (461)
Q Consensus 216 ~~~rVfeI~~~FR~E~~~t~-rHl~EFtmlE~e~a~ 250 (461)
.--|.|+||++||.|..... -+.-||+|+++|.-.
T Consensus 103 ~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G 138 (464)
T 4g84_A 103 TNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 138 (464)
T ss_dssp SCEEEEEEEEEECCCC------CCSEEEEEEEEEES
T ss_pred CCceeEEEecceeccCCccccCccceeeecceeccC
Confidence 12378999999999965322 244699999999854
|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
Probab=97.53 E-value=6.3e-05 Score=77.60 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C--CCC-----cceeeeecCCCcccccCC---ccccCCCcc-c
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GAG-----EQFCVTTLIPSSREAAES---PVDAIPKTK-D 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g~~-----~~F~v~~~~~~~~~~~~s---~~~~l~~~~-~ 212 (461)
..-.+++..|.+.+++.+.++||.||.||+|..... + |-- +.|.++ ....+|... +...+.... .
T Consensus 190 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~---d~~l~LrPt~e~~~~~~~~~~~~ 266 (455)
T 2dq0_A 190 NEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVE---DEDLYLIPTAEHPLAGMHANEIL 266 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBT---TSSCEECSSTHHHHHHTTTTEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeec---CCcEEEcCcCcHHHHHHHHhCcc
Confidence 456788899999999999999999999999998432 1 211 334332 111122111 001111100 0
Q ss_pred cCcCc-ceeEEEecccccCCCCCC--C----CccccccceeeeccCCHHHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFADLKDDMACATAYLQYVV 268 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~~t~--r----Hl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~ 268 (461)
....+ -|+|++|+|||+|.+... + -.-||+|.|++ .|++-++..+..++++....
T Consensus 267 s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~~~e~l~~~~ 328 (455)
T 2dq0_A 267 DGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEWHEKIIRNAE 328 (455)
T ss_dssp ETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHHHHHHHHHHH
T ss_pred CchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHHHHHHHHHHH
Confidence 00011 379999999999975211 0 12399999998 57766777777777765443
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00012 Score=79.02 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C--C-----CCcceeeeecCCCcccccCCcccc-----CC-C
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDA-----IP-K 209 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~~s~~~~-----l~-~ 209 (461)
.-.-.+++..|.+.+|+.+.+.||.||.||+|....- + | ..+.|. ...+. ..+...|... +. .
T Consensus 267 lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~-~d~~~--~~~~LrP~~~~~~~~~~~~ 343 (642)
T 1qf6_A 267 HNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSEN--REYCIKPMNCPGHVQIFNQ 343 (642)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE-EEETT--EEEEECSSSHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee-eecCC--ceEEecCCCCHHHHHHHHh
Confidence 4567889999999999999999999999999998541 1 1 124555 22111 1111122110 00 0
Q ss_pred ccccCcCc-ceeEEEecccccCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 210 TKDGLIDW-SQVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 210 ~~~~~~~~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
.......+ -|+|+||+|||+|.+ +.+| .-||||.|+|. |++.+++....++++..+
T Consensus 344 ~~~syr~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~-f~~~~~~~~e~~~~i~~~ 404 (642)
T 1qf6_A 344 GLKSYRDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRLV 404 (642)
T ss_dssp SCEEGGGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred hhhhccccCeEEEEeccEEecCCC-ccccCCceeeeEEEccEEE-EcCHHHHHHHHHHHHHHH
Confidence 00000011 389999999999987 2221 35999999998 777666555554444433
|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00015 Score=75.23 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC---CC-----CCcceeeeecCCCcccccCCcccc-----CCCc--c
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDA-----IPKT--K 211 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~---eg-----~~~~F~v~~~~~~~~~~~~s~~~~-----l~~~--~ 211 (461)
-.+++..|.+.+|+.|.+.||.||.||+|..... .| ..+.|.++.-+ ..+...|... +... .
T Consensus 48 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~~~---~~l~LRP~~t~~i~~~~~~~~~ 124 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEG---HEFAVKPMNCPYHILLFLNEVA 124 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEETT---EEEEECSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEecCC---cEEEEccccHHHHHHHHHhhhh
Confidence 5778899999999999999999999999998531 11 23566653211 1222222111 0000 0
Q ss_pred ccC--cCc-ceeEEEecccccCCCC--CC--CCccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 212 DGL--IDW-SQVYTFGPTFRAENSN--TS--RHLAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 212 ~~~--~~~-~rVfeI~~~FR~E~~~--t~--rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
+.. ..+ -|+|+||+|||+|.+. .. | .-||+|.|+|.- .+.++..+...+++..+
T Consensus 125 s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R-~REF~Q~~~e~f-~~~~~~~de~~e~i~~~ 185 (471)
T 3a32_A 125 KHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLR-VRGFTQDDAHII-VPGGRVIDVVYDVFEEM 185 (471)
T ss_dssp HHGGGSCSSEEEEEEEEEECCCCGGGCBTTTB-CSEEEEEEEEEE-EEGGGHHHHHHHHHHHH
T ss_pred hccccccCCeEEeeccceeccCCCccccccee-EEEEEECCeEEE-cChHHHHHHHHHHHHHH
Confidence 000 011 3899999999999763 11 2 359999999974 44444444444444433
|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
Probab=97.49 E-value=8.8e-05 Score=76.70 Aligned_cols=104 Identities=14% Similarity=0.119 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--CC-C----CcceeeeecCCCcccccCCccccCC--Cc-cccC-
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--EG-A----GEQFCVTTLIPSSREAAESPVDAIP--KT-KDGL- 214 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--eg-~----~~~F~v~~~~~~~~~~~~s~~~~l~--~~-~~~~- 214 (461)
.-.+++..+...+|+.|..+||.||.||++..... .+ + .+.|.+...+ ...+...|....+ +. ....
T Consensus 41 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~--g~~l~LRpd~T~~~aR~~~~~~~ 118 (456)
T 3lc0_A 41 EAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKG--GHRVALRPEMTPSLARLLLGKGR 118 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSS--SCEEEECSCSHHHHHHHHHHSCT
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCC--CCEEecCCcCHHHHHHHHHhcCc
Confidence 34678899999999999999999999999987542 11 1 2456543222 2223333322111 00 0000
Q ss_pred --cCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 215 --IDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 215 --~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
..--|.|+||+|||+|.+... +.-||+|+++|.-..+
T Consensus 119 ~~~~P~r~~y~g~vfR~e~~~~g-R~ReF~Q~g~ei~G~~ 157 (456)
T 3lc0_A 119 SLLLPAKWYSIPQCWRYEAITRG-RRREHYQWNMDIVGVK 157 (456)
T ss_dssp TCCSSEEEEECCEEECCCC------CCEEEEEEEEEESCC
T ss_pred ccCCCEEEEEeccEEecCCCCCC-CccceEEEEEEEEcCC
Confidence 012489999999999987544 4579999999986553
|
| >3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00052 Score=71.39 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC--------CCCCcceeeeecC--------CCcccccCC---ccc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--------EGAGEQFCVTTLI--------PSSREAAES---PVD 205 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~--------eg~~~~F~v~~~~--------~~~~~~~~s---~~~ 205 (461)
..-.+++.++++.+++.+.++||.||.||.|.+... .-..+.|.++..+ ....+|... +..
T Consensus 198 p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~ 277 (522)
T 3vbb_A 198 GVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIA 277 (522)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHH
Confidence 346888999999999999999999999999987432 1123567664221 111222211 111
Q ss_pred cCCCcc-ccCcCc-ceeEEEecccccCCCCCC------CCccccccceeeeccCCHHH--HHHHHHHHHHHH
Q 012529 206 AIPKTK-DGLIDW-SQVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFADLKD--DMACATAYLQYV 267 (461)
Q Consensus 206 ~l~~~~-~~~~~~-~rVfeI~~~FR~E~~~t~------rHl~EFtmlE~e~a~~d~~d--lm~~~e~li~~i 267 (461)
.++... .....+ -|+|++++|||+|-+-.. --.-||+|.|.+. |+.-++ ..+..++++...
T Consensus 278 ~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~-f~~pe~e~s~~e~e~ml~~~ 348 (522)
T 3vbb_A 278 ALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV-YSSPHDNKSWEMFEEMITTA 348 (522)
T ss_dssp TTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHHHH
T ss_pred HHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE-EeCCChHHHHHHHHHHHHHH
Confidence 111100 000011 269999999999964100 1124999999985 554333 666666665543
|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00037 Score=72.81 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHH-HhhhCCcEEEecceeecCCC----C----CCCcceeeeecC----------------------
Q 012529 145 GAVARVRNALAYATHK-FFQENGFIWISSPIITASDC----E----GAGEQFCVTTLI---------------------- 193 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~-ff~~~gF~EV~TPiL~~~~~----e----g~~~~F~v~~~~---------------------- 193 (461)
..-.+++..|.+.+++ ++.+.||.||.||+|.+... + -+.+.|.++..+
T Consensus 228 P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~ 307 (522)
T 2cja_A 228 PQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPT 307 (522)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCH
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhccccccc
Confidence 4567788899999996 68899999999999998421 1 122455553211
Q ss_pred --------CCcccccCC---ccccCCCcc-ccCcCc-ceeEE-EecccccCCC--CCCCCccccccceeeeccCCHHHHH
Q 012529 194 --------PSSREAAES---PVDAIPKTK-DGLIDW-SQVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDM 257 (461)
Q Consensus 194 --------~~~~~~~~s---~~~~l~~~~-~~~~~~-~rVfe-I~~~FR~E~~--~t~rHl~EFtmlE~e~a~~d~~dlm 257 (461)
.....+... +...+.... .....+ -++|+ +|+|||+|.. ++---.-||+|.|++. |++.++..
T Consensus 308 ~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~pe~s~ 386 (522)
T 2cja_A 308 KLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGTKEEVL 386 (522)
T ss_dssp HHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEEHHHHH
T ss_pred cccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeChHHHH
Confidence 001111110 111111100 000011 26999 9999999932 1111234999999998 88888888
Q ss_pred HHHHHHHHHHHHHH
Q 012529 258 ACATAYLQYVVRYI 271 (461)
Q Consensus 258 ~~~e~li~~i~~~~ 271 (461)
+..++++......+
T Consensus 387 ee~ee~i~~~~~~~ 400 (522)
T 2cja_A 387 KCAEELHDRYMHIF 400 (522)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888874444433
|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00021 Score=75.10 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecC------CCCCCCcceeeeecCCCcccccCCccccCC--Cc-cccC
Q 012529 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITAS------DCEGAGEQFCVTTLIPSSREAAESPVDAIP--KT-KDGL 214 (461)
Q Consensus 144 ~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~------~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~-~~~~ 214 (461)
.-.-.++|..|...+|+.|..+||.||.||++... .++..-..|.+.. .....++..|....+ +. .+..
T Consensus 77 lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D--~~g~~l~LRPd~T~~~aR~~~~~~ 154 (517)
T 4g85_A 77 SPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKD--QGGELLSLRYDLTVPFARYLAMNK 154 (517)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCC--TTSCCEEECSCSHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEEC--CCCCEEEeCCcCcHHHHHHHHhCC
Confidence 34567888999999999999999999999999753 2222223443322 222223333321111 00 0000
Q ss_pred cCcceeEEEecccccCCCCC-CCCccccccceeeecc
Q 012529 215 IDWSQVYTFGPTFRAENSNT-SRHLAEFWMIEPELAF 250 (461)
Q Consensus 215 ~~~~rVfeI~~~FR~E~~~t-~rHl~EFtmlE~e~a~ 250 (461)
..--|.|+||+|||.|.+.. .=+.=||+|+++|.-.
T Consensus 155 ~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G 191 (517)
T 4g85_A 155 LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 191 (517)
T ss_dssp CSCEEEEEEEEEECCCC-------CCEEEEEEEEEES
T ss_pred CCCceeEEEeceEeccCcccccCccceeeeeceeccC
Confidence 11237899999999997521 1134699999999865
|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00042 Score=72.80 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C-------CCCcceeeeecCCCcccccCCc---cccCCCc-cc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E-------GAGEQFCVTTLIPSSREAAESP---VDAIPKT-KD 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e-------g~~~~F~v~~~~~~~~~~~~s~---~~~l~~~-~~ 212 (461)
..-.+++.++++.+++.+.++||.||.||.|.+... + -..+.|.++. ...+|.... ...+... ..
T Consensus 272 p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~~---~~~~L~PT~E~~~~~l~~~~i~ 348 (536)
T 3err_A 272 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE---TDLYLTGTAEVVLNALHSGEIL 348 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEETT---TTEEECSSTHHHHHHHTTTCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEecC---CCEEEccCCcHHHHHHHhcccc
Confidence 457889999999999999999999999999987432 1 1235666531 112222110 0011110 00
Q ss_pred cCcCc-ceeEEEecccccCCC-CC-----CCCccccccceeeeccCCH--HHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENS-NT-----SRHLAEFWMIEPELAFADL--KDDMACATAYLQYV 267 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~-~t-----~rHl~EFtmlE~e~a~~d~--~dlm~~~e~li~~i 267 (461)
....+ -|+|++++|||+|-+ .+ ---.-||+|.|.+. |+.- ++..+..++++...
T Consensus 349 s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~e~s~~~~e~~~~~~ 411 (536)
T 3err_A 349 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASLEASDRAFQELLENA 411 (536)
T ss_dssp EGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCHHHHHHHHHHHHHHH
T ss_pred cHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCchHHHHHHHHHHHHHH
Confidence 00011 269999999999963 11 11234999999985 6643 47777777776654
|
| >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0014 Score=68.47 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhh--hCCcEEEecceeecCC
Q 012529 146 AVARVRNALAYATHKFFQ--ENGFIWISSPIITASD 179 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~--~~gF~EV~TPiL~~~~ 179 (461)
.-.+++..|.+.+|+.|. +.||.||.||+|.+..
T Consensus 37 ~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 357788999999999999 8999999999999854
|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00043 Score=66.67 Aligned_cols=86 Identities=9% Similarity=-0.015 Sum_probs=52.4
Q ss_pred HHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCccc--cC-c-CcceeEEEecccccCCCC
Q 012529 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKD--GL-I-DWSQVYTFGPTFRAENSN 233 (461)
Q Consensus 158 iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~--~~-~-~~~rVfeI~~~FR~E~~~ 233 (461)
+++.|..+||.||.||++.....=.. +.|. + .....+...|....+.... .. . .--|.|++|+|||.|.+.
T Consensus 12 ~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f~-d---~~g~~l~LRpd~T~~~a~~~~~~~~~~p~R~~y~g~vfR~e~~~ 86 (275)
T 1usy_A 12 FYSKATKKGFSPFFVPALEKAEEPAG-NFFL-D---RKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYRYSGSD 86 (275)
T ss_dssp HHHHHHHTTCEECCCCSEEECSSCCS-SCEE-E---TTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEEEETTE
T ss_pred HHHHHHHCCCEEecCccccchhhhcc-cccC-C---CCCCEEEeCCcChHHHHHHHhhcCCCCceEEEEeceEEecCCCC
Confidence 34999999999999999997543111 2331 2 1122233333221111100 00 0 124899999999999874
Q ss_pred CCCCccccccceeeeccCC
Q 012529 234 TSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 234 t~rHl~EFtmlE~e~a~~d 252 (461)
. -||||+++|.-..+
T Consensus 87 ~----Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 87 L----VAEYQLGLEKVPRN 101 (275)
T ss_dssp E----EEEEEEEEEEESCC
T ss_pred C----CeeeEeCEEEecCC
Confidence 3 59999999986553
|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0014 Score=64.36 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CCC-------CcceeeeecCCC---------------------
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGA-------GEQFCVTTLIPS--------------------- 195 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-------~~~F~v~~~~~~--------------------- 195 (461)
...-+++..+.+.+++ ..++||.||.||.|.+... ++. ...|.+..+...
T Consensus 61 g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l 139 (346)
T 3mf2_A 61 ALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSL 139 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGE
T ss_pred chHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhcccccccccc
Confidence 4456777889999999 8899999999999987443 222 244555432210
Q ss_pred ---cccccCCccccCCCccc--cC--cCcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHH
Q 012529 196 ---SREAAESPVDAIPKTKD--GL--IDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVV 268 (461)
Q Consensus 196 ---~~~~~~s~~~~l~~~~~--~~--~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~ 268 (461)
+.++....+..+...-. +. ..=-|+-++++|||.|.+.+--.+-+|+|.|+-. |++-+++.+..++++..+-
T Consensus 140 ~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~l~~~ae 218 (346)
T 3mf2_A 140 SPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRERWMVRAQ 218 (346)
T ss_dssp EEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHHHHHHHH
Confidence 11111111111100001 00 0113577799999999876656667999998865 6789999999888887654
Q ss_pred H
Q 012529 269 R 269 (461)
Q Consensus 269 ~ 269 (461)
.
T Consensus 219 ~ 219 (346)
T 3mf2_A 219 A 219 (346)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B | Back alignment and structure |
|---|
Probab=96.78 E-value=0.013 Score=49.80 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=56.5
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcch-hhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeE
Q 012529 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (461)
Q Consensus 30 ~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~-~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~ 108 (461)
..|++.|+|.++.....-.-+.|.|+|| ..|.|....+...- ..... +..|++|.|.|.+..-.. ...|.+..
T Consensus 32 ~~V~iVG~V~~~~~~~~~~~~~ldD~TG-~~I~~~~W~~~~~~~~~~~~--~~~g~yVrV~G~l~~f~g---~~qi~~~~ 105 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPETYVKVAGHLRSFQN---KKSLVAFK 105 (132)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEEC---------CC--CCTTCEEEEEEEEEEETT---EEEEEEEE
T ss_pred EEEEEEEEEEEEEEcCCeEEEEEECCCC-CEEEEEEEccCCCccccccc--ccCCCEEEEEEEEEeECC---EEEEEEEE
Confidence 4689999999999987777789999998 14999887654211 11334 999999999999977543 36678877
Q ss_pred EEEecc
Q 012529 109 IVLVGK 114 (461)
Q Consensus 109 i~vl~~ 114 (461)
+..+..
T Consensus 106 ir~v~d 111 (132)
T 3kdf_D 106 IMPLED 111 (132)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 766644
|
| >3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.014 Score=51.22 Aligned_cols=79 Identities=15% Similarity=0.264 Sum_probs=61.7
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc-hhh-hhhcCCCCCcEEEEEeeEeecCCCCccEEEEEe
Q 012529 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (461)
Q Consensus 30 ~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~-~~~-~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~ 107 (461)
+.|+|.|.|.+++...+.....|-|+||. .|.|++..+... -.. ... +..|++|.|.|.+..-.. ..+|.++
T Consensus 48 ~~V~IvGiVv~~~~~~~~~~ytIDD~TG~-~I~cv~w~~~~~~~~~~~~~--l~~G~~VrV~G~v~~fr~---~rqI~~~ 121 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYEGKHVLTVDDCSGM-VLRVVFIIQDDFSMSKRAIS--MSPGNVVCVFGKINSFRS---EVELIAQ 121 (159)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEECSSSC-EEEEEEEGGGCHHHHHHHTT--CCTTCEEEEEEEEECSSS---SCEEEEE
T ss_pred EEEEEEEEEEEEEEeCCEEEEEEecCCCC-eEEEEEEccCCCCccccccc--CCCCCEEEEEEEEEeeCC---EEEEEEE
Confidence 56999999999999877788899999983 699998765421 111 123 899999999999966433 4689999
Q ss_pred EEEEecc
Q 012529 108 KIVLVGK 114 (461)
Q Consensus 108 ~i~vl~~ 114 (461)
++.++..
T Consensus 122 ~i~~v~d 128 (159)
T 3kf6_A 122 SFEELRD 128 (159)
T ss_dssp EEEEECS
T ss_pred EEEECCC
Confidence 9998875
|
| >4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.013 Score=50.04 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=56.7
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcch--hhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEe
Q 012529 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (461)
Q Consensus 30 ~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~--~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~ 107 (461)
..|++.|+|.+++....-.-+.|.|+||. |.|....+.... ..... +..|++|.|.|.+..-.. ...|.+.
T Consensus 37 ~~V~iVG~V~~~~~~~~~~~~~ldD~TG~--I~~~~W~~~~~~~~~~~~~--~~~g~yVrV~G~v~~f~g---~~qi~~~ 109 (136)
T 4gop_B 37 GQLTFVAVVRNISRNATNVAYSVEDGTGQ--IEVRQWLDSSSDDSSKASE--IRNNVYVRVLGTLKSFQN---RRSISSG 109 (136)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEECSSCE--EEEEEECC--------CCS--CCTTCEEEEEEEEEEETT---EEEEEES
T ss_pred EEEEEEEEEEEEEecCCeEEEEEECCCCC--EEEEEecccCCcccccccc--cCCCCEEEEEEEEEEeCC---EEEEEEE
Confidence 56999999999999877677889999974 999887643321 12334 999999999999976532 3667777
Q ss_pred EEEEecc
Q 012529 108 KIVLVGK 114 (461)
Q Consensus 108 ~i~vl~~ 114 (461)
.+..+..
T Consensus 110 ~ir~v~d 116 (136)
T 4gop_B 110 HMRPVID 116 (136)
T ss_dssp EEEECSS
T ss_pred EEEECCC
Confidence 7766544
|
| >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0063 Score=62.39 Aligned_cols=117 Identities=9% Similarity=-0.040 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHhh-hCC-cEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCcc-ccCcCc-ceeEE
Q 012529 147 VARVRNALAYATHKFFQ-ENG-FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTK-DGLIDW-SQVYT 222 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~-~~g-F~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~-~~~~~~-~rVfe 222 (461)
=..+|+.|++..|.-|. +++ +.||+||+...-..-|.-+-|. -+.-+. +++..+...+... +....+ =++.|
T Consensus 103 G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d~~~-~~LRPe---Taqg~~~nfk~~~~s~r~~LP~~iaq 178 (459)
T 3ikl_A 103 GVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFR-GGLREN---LLHGALEHYVNCLDLVNKRLPYGLAQ 178 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCSCCT-TB-CSC---SHHHHHHHTTTTTGGGTTBSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchhhhc-ceECCC---CChhHHHHHhhhhhhccccCCeEEEE
Confidence 45788999986665554 355 7779999955533334444443 011110 0000110001100 000011 25899
Q ss_pred EecccccCC--CCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHHHH
Q 012529 223 FGPTFRAEN--SNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYVVR 269 (461)
Q Consensus 223 I~~~FR~E~--~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~ 269 (461)
||+|||+|. + +.+| .-||||.|++. |++-++..+..+.++.....
T Consensus 179 ig~~FR~E~g~~-~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~~~~~~~ 229 (459)
T 3ikl_A 179 IGVCFHPVFDTK-QIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFWLRHRLQ 229 (459)
T ss_dssp EEEEECCC-----------CCCCEEEEEEEEE-EECGGGHHHHHHHHHHHHHH
T ss_pred Eeeeeecccccc-cCCCCcccccceeeeeEEE-EeChhHHHHHHHHHHHHHHH
Confidence 999999994 2 3333 25999999985 77777766666666655543
|
| >3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.035 Score=45.14 Aligned_cols=88 Identities=13% Similarity=0.207 Sum_probs=65.4
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeec-------C---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCC
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~-------~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l 80 (461)
...|++|.+ +..|.|.|+|.++.. . +++.=+.|.|.|| +|.+++-.+.... . +
T Consensus 5 ~~~I~dL~~---------~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG--~IrvtlW~~~a~~----~--l 67 (105)
T 3dm3_A 5 TYNIGELSP---------GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG--SIRVTLWDNLTDI----D--V 67 (105)
T ss_dssp EECGGGCCS---------SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE--EEEEEEEGGGGGS----C--C
T ss_pred ceEHHHCCC---------CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECccccc----c--c
Confidence 345666654 367999999988642 1 3355588999997 4999887654321 4 9
Q ss_pred CCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCC
Q 012529 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP 117 (461)
Q Consensus 81 ~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~ 117 (461)
.+||+|.+.|.+.....+ .+||.+.+...+.+|..
T Consensus 68 ~~Gdvv~i~g~vk~~~~g--~~eL~~g~~~~i~~~~~ 102 (105)
T 3dm3_A 68 GRGDYVRVRGYIREGYYG--GLECTANYVEILKKGEK 102 (105)
T ss_dssp CTTCEEEEEEEEEECTTS--SEEEEEEEEEEEECCC-
T ss_pred CCCCEEEEEEEEEEccCC--CEEEEeCCceEEEeccc
Confidence 999999999999886533 79999999999999863
|
| >3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.053 Score=43.34 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=61.2
Q ss_pred eeeccccCCCcCCCCCCCCEEEEEEEEeeee---c----C---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCC
Q 012529 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR---A----Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (461)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R---~----~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~ 81 (461)
..|+||.+ +..|.|.|+|.++- . . +++.=+.|.|.|| +|.+++-.+... + . +.
T Consensus 3 ~kI~dl~~---------g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG--~I~~tlW~~~~~---~-~--i~ 65 (97)
T 3e0e_A 3 YKISELMP---------NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG--SIRGTLWNELAD---F-E--VK 65 (97)
T ss_dssp ECGGGCCT---------TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE--EEEEEEEGGGGG---C-C--CC
T ss_pred eEHHHCCC---------CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECCccc---c-c--cC
Confidence 45666653 36799999998863 2 1 2466688899997 499988765321 1 4 99
Q ss_pred CCcEEEEEeeEeecCCCCccEEEEEeEEEEeccC
Q 012529 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (461)
Q Consensus 82 ~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~ 115 (461)
.||+|.|.|.+..... .+||.+.+...+-+|
T Consensus 66 ~Gdvv~i~g~v~~~~~---~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 66 KGDIAEVSGYVKQGYS---GLEISVDNIGIIEKS 96 (97)
T ss_dssp TTCEEEEEEEEEEC-----CEEEEEEEEEEEECC
T ss_pred CCCEEEEEEEEEEcCC---eEEEEECCCcEEEEC
Confidence 9999999999866533 699999998888776
|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0045 Score=64.52 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=38.7
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
|+||+|+|||.+...+.+|.+||+|++.-+... |+.|+...++.+++.+
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 699999999987541246999999999888775 6888888888776643
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.015 Score=62.86 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhh-hCCcEEEecceeec
Q 012529 145 GAVARVRNALAYATHKFFQ-ENGFIWISSPIITA 177 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~-~~gF~EV~TPiL~~ 177 (461)
-.=.+++..|.+.+|+.|. ..||.||.||+|++
T Consensus 98 P~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~ 131 (693)
T 2zt5_A 98 PVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTP 131 (693)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEE
T ss_pred CChHHHHHHHHHHHHHHHHHhcCcEEEEeCCccc
Confidence 4467889999999999998 56999999999997
|
| >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.036 Score=45.60 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=57.9
Q ss_pred CCCEEEEEEEEeee---e----cC---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCC
Q 012529 28 VGLMIVVAGWVRTL---R----AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (461)
Q Consensus 28 ~~~~v~v~G~v~~~---R----~~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~ 97 (461)
.|+.+.+.|.|.++ | .. +++..+.|.|+|| .|.+++-.+... .... +..|++|.|.|.+....-
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG--~I~~t~w~~~~~--~~~~--l~~G~vv~i~g~~v~~~f 88 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG--ELRAVFWTENIK--LLKK--FREGDVIRIKDVNIRGGF 88 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE--EEEEEEETTGGG--GGGT--CCTTSEEEEEEEEECCCS
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC--eEEEEEeCchhh--hhhc--CCCCCEEEEEeeEEcccc
Confidence 46789999999988 2 12 4688899999997 499988866432 1235 999999999999865422
Q ss_pred CCccEEEEEeEEEEeccC
Q 012529 98 SKQKVELKVNKIVLVGKS 115 (461)
Q Consensus 98 ~~~~~el~~~~i~vl~~~ 115 (461)
. +.++|.+.+...+.++
T Consensus 89 ~-g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 89 G-GRKEAHLMPRSTVEVL 105 (115)
T ss_dssp S-SSCEEEECTTCCEEEE
T ss_pred C-CeEEEEECCCceEEEC
Confidence 1 2578888665555444
|
| >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.018 Score=59.27 Aligned_cols=121 Identities=8% Similarity=-0.056 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHH-h-hhCCcEEEecceeecCCC-CCC--CcceeeeecCCC----c---------------ccccCC
Q 012529 147 VARVRNALAYATHKF-F-QENGFIWISSPIITASDC-EGA--GEQFCVTTLIPS----S---------------REAAES 202 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~f-f-~~~gF~EV~TPiL~~~~~-eg~--~~~F~v~~~~~~----~---------------~~~~~s 202 (461)
=.+++..|.+.+++- + .+.|+.||.||+|.+..- .+. ++.|..+.+... . ......
T Consensus 61 G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LR 140 (454)
T 1g5h_A 61 GVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLR 140 (454)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEEC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeec
Confidence 467889999988877 4 589999999999998652 211 121111111100 0 000001
Q ss_pred cccc------CCCcc-ccCcCc-ceeEEEecccc---cCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 203 PVDA------IPKTK-DGLIDW-SQVYTFGPTFR---AENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 203 ~~~~------l~~~~-~~~~~~-~rVfeI~~~FR---~E~~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
|+.+ .+... +....+ =+++|||+||| ||-+ .+| .-||||.|++. |++.++..+..+.++...
T Consensus 141 Peta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s--~~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~~~~ 217 (454)
T 1g5h_A 141 ATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQ--TPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRHR 217 (454)
T ss_dssp SCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCccccc--CCCCccccCceehhheEE-EeCHhhHHHHHHHHHHHH
Confidence 1000 00000 000011 25999999999 6854 244 45999999995 788887766666665554
Q ss_pred HHH
Q 012529 268 VRY 270 (461)
Q Consensus 268 ~~~ 270 (461)
..-
T Consensus 218 ~~~ 220 (454)
T 1g5h_A 218 LLW 220 (454)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.13 Score=48.99 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=56.8
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcch-hhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeE
Q 012529 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (461)
Q Consensus 30 ~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~-~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~ 108 (461)
..|++.|+|.++...+...-+.|.|+|| ..|.|.+..+...- ..... +..|++|.|.|++..-.. ...|.+..
T Consensus 72 ~~V~ivG~V~~i~~~~~~~~~~L~D~TG-~~I~~k~W~~~~~~~~~~~~--~~~G~yVrV~G~v~~f~g---~~qi~i~~ 145 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPETYVKVAGHLRSFQN---KKSLVAFK 145 (270)
T ss_dssp SEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEECC-------CCC--CCTTCEEEEEEEEEEETT---EEEEEEEE
T ss_pred EEEEEEEEEEEEEeccceEEEEEECCCC-CEEEEEEEcCcCcccchhhc--CCCCCEEEEEEEEEecCC---eeEEEEEE
Confidence 3699999999998887777778999997 14888887543210 01234 899999999999977543 46678877
Q ss_pred EEEecc
Q 012529 109 IVLVGK 114 (461)
Q Consensus 109 i~vl~~ 114 (461)
|..+..
T Consensus 146 ir~v~d 151 (270)
T 2pi2_A 146 IMPLED 151 (270)
T ss_dssp EEECSC
T ss_pred EEecCC
Confidence 776655
|
| >1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.062 Score=43.84 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=57.9
Q ss_pred eeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEee
Q 012529 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (461)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~ 91 (461)
.++++++.. ..+..|++.|.|.+.-..-. ..++|++| .|+|-++.+. ....-+++++-|.+.|.
T Consensus 26 ~TV~~a~~~------~Dd~~V~L~G~Iv~~~~~d~---Y~F~D~TG--~I~VeId~~~-----w~g~~v~p~~~Vri~Ge 89 (109)
T 1nnx_A 26 TTVESAKSL------RDDTWVTLRGNIVERISDDL---YVFKDASG--TINVDIDHKR-----WNGVTVTPKDTVEIQGE 89 (109)
T ss_dssp CCHHHHTTS------CSSEEEEEEEEEEEEEETTE---EEEEETTE--EEEEECCGGG-----STTCCCCTTSCEEEEEE
T ss_pred EeHHHHhhC------cCCCeEEEEEEEEEEeCCCe---EEEECCCc--cEEEEEChhh-----cCCcccCCCCEEEEEEE
Confidence 345555542 56789999999976443322 57799997 4888776542 22222899999999999
Q ss_pred EeecCCCCccEEEEEeEEEEecc
Q 012529 92 VVPSQGSKQKVELKVNKIVLVGK 114 (461)
Q Consensus 92 ~~~~~~~~~~~el~~~~i~vl~~ 114 (461)
|.+.-. ..||.|+.|++|.+
T Consensus 90 vDkd~~---~~eIdV~~i~~~~~ 109 (109)
T 1nnx_A 90 VDKDWN---SVEIDVKQIRKVNP 109 (109)
T ss_dssp EEEETT---EEEEEEEEEEEC--
T ss_pred ECCCCC---ceEEEEEEEEEccC
Confidence 986432 46899999988753
|
| >3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.13 Score=51.63 Aligned_cols=77 Identities=13% Similarity=0.245 Sum_probs=61.2
Q ss_pred CCCEEEEEEEEeee-ec-CCCeEEEEEEcCccCccEEEEEeCCCcchhh-hhhcCCCCCcEEEEEeeEeecCCCCccEEE
Q 012529 28 VGLMIVVAGWVRTL-RA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (461)
Q Consensus 28 ~~~~v~v~G~v~~~-R~-~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~-~~~~~l~~g~~V~v~G~~~~~~~~~~~~el 104 (461)
....+.|.|.|.+. +. .|+=.|+.|.|+++ .|.|++=.....|.. ++. |..||.|.|.|.+.. + .|
T Consensus 283 ~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~--~i~c~ayeptk~fr~~vr~--L~~GD~V~v~G~v~~------g-tL 351 (402)
T 3au7_A 283 NYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFG--SVKCAAFEPTKQFRNVIRL--LRKGDVVEVYGSMKK------D-TI 351 (402)
T ss_dssp TTCEEEEEEEEEEEEEEETTTEEEEEEEETTE--EEEEEECGGGTTHHHHHTT--CCTTCEEEEEEEEET------T-EE
T ss_pred cCceEEEEEEEecCcEeccCceEEEEEEcCCC--EEEEEEEccchHHHHHHhc--CCCCCEEEEEEeecC------C-EE
Confidence 45789999999998 65 48889999999864 599988553334544 456 999999999999755 1 79
Q ss_pred EEeEEEEeccC
Q 012529 105 KVNKIVLVGKS 115 (461)
Q Consensus 105 ~~~~i~vl~~~ 115 (461)
.++++.+++-+
T Consensus 352 nvEk~~v~~l~ 362 (402)
T 3au7_A 352 NLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEcccC
Confidence 99999999775
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.02 Score=59.58 Aligned_cols=48 Identities=21% Similarity=0.334 Sum_probs=38.6
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 266 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~ 266 (461)
|+||||+|||.|...+..|.+||+|++..+... |+.+++..++.++..
T Consensus 207 rLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~ 256 (534)
T 2du3_A 207 KLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQ 256 (534)
T ss_dssp EEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGG
T ss_pred eEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 699999999986541357999999999998874 688888877777654
|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.034 Score=59.13 Aligned_cols=112 Identities=10% Similarity=0.032 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCC--C------CCCcceeeeecCCCcc---cccCCccccCCCccc---cCcCc
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDC--E------GAGEQFCVTTLIPSSR---EAAESPVDAIPKTKD---GLIDW 217 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~--e------g~~~~F~v~~~~~~~~---~~~~s~~~~l~~~~~---~~~~~ 217 (461)
.++.+.+|+.|...||.|+-|+.+++..- + +..+.+.+ .|+.+. .+.+|....|-...+ ....=
T Consensus 394 ~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L--~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~ 471 (589)
T 3l4g_B 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHI--SNPKTAEFQVARTTLLPGLLKTIAANRKMPLP 471 (589)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBB--SSCSSGGGSEECSCSHHHHHHHHHHTTTSCSC
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEE--cCCCchhHhHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45678899999999999999999987421 1 11222322 122111 011121111000000 00001
Q ss_pred ceeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHH
Q 012529 218 SQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 266 (461)
Q Consensus 218 ~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~ 266 (461)
=|+||+|+|||.+.. ..+|.+|+.++..-+... ++.++...++.++..
T Consensus 472 vrlFEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 472 LKLFEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp EEEEEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred eEEEEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 379999999998755 467889999998765543 577776666655543
|
| >3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.24 Score=45.32 Aligned_cols=83 Identities=16% Similarity=0.233 Sum_probs=58.6
Q ss_pred CCEEEEEEEEeeeecCC--------CeEEEEEEcCccCc-cEEEEEeCCCcchhh----hhhcCCCCCcEEEEEeeEeec
Q 012529 29 GLMIVVAGWVRTLRAQS--------SVTFIEVNDGSCLS-NMQCVMTSDAEGYDQ----VKSGLITTGASIWIQGNVVPS 95 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~~~--------~~~Fi~l~D~s~~~-~iQvv~~~~~~~~~~----~~~~~l~~g~~V~v~G~~~~~ 95 (461)
=+.|.|.|.|..++..- ...|+.|-|.||.. .|.|.++... +.. +.. ...|.+|.|+|++..-
T Consensus 85 I~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~--~~~~gl~l~~--~~~G~iV~VkG~i~~~ 160 (220)
T 3kf8_A 85 VNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQ--FKEVGLTLDK--KNYGKIVELEGEIYNW 160 (220)
T ss_dssp ECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHH--HHTTTCCTTS--CCTTCEEEEEEEEEEC
T ss_pred cEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHH--hhccCccccc--cCCCeEEEEEEEEEee
Confidence 36799999999997652 45899999999852 4666655321 211 112 4589999999999875
Q ss_pred CC-----CCccEEEEEeEEEEeccC
Q 012529 96 QG-----SKQKVELKVNKIVLVGKS 115 (461)
Q Consensus 96 ~~-----~~~~~el~~~~i~vl~~~ 115 (461)
.. +.-.-||+++++++++..
T Consensus 161 r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 161 YDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred ccccccccccceEEEEEEEEEeccC
Confidence 32 111359999999999875
|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.059 Score=59.27 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhhhCCcEEEecceeecCCCC----CCCc-ceeeeecCCCcc---cccCCccccCCCcccc----CcCcc
Q 012529 151 RNALAYATHKFFQENGFIWISSPIITASDCE----GAGE-QFCVTTLIPSSR---EAAESPVDAIPKTKDG----LIDWS 218 (461)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~e----g~~~-~F~v~~~~~~~~---~~~~s~~~~l~~~~~~----~~~~~ 218 (461)
...+.+.+|+.|...||.|+.|..+++...- +..+ .+.+ .|+.+. .+.++....+-...+. +..==
T Consensus 495 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L--~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~v 572 (795)
T 2rhq_B 495 RQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISL--LMPMSEAHATLRQSLLPHLIEATAYNVARKNKDV 572 (795)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEEC--SSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEE--cCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCe
Confidence 3467788999999999999999999876321 1112 2222 122110 0111110000000000 00012
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeecc-------------CCHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~-------------~d~~dlm~~~e~li~~i 267 (461)
|+||+|+|||.+.. ...| +||+++..=++. .|+.++...+|.++..+
T Consensus 573 rlFEiG~Vf~~d~~-~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 573 RLYEIGRVFFGNGE-GELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEEEEECCCT-TSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCCc-ccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 79999999996543 2256 899999865443 57889999999988765
|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.052 Score=57.23 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=40.6
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
|+||+|+|||++..-+.+|.+||+|++.-+... |+.|+...+|.+++.+
T Consensus 226 RLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 699999999986531357999999999888774 7899999999988765
|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.053 Score=57.23 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=40.6
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
|+||+|+|||++..-+.+|.+||+|++.-+... |+.|+...+|.+++.+
T Consensus 226 RLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 699999999986541357999999999888774 7899999999988765
|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.053 Score=57.31 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=40.8
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
|+||+|+|||++...+.+|.+||+|++.-+... |+.|+...+|.+++.+
T Consensus 226 RLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred EEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 699999999986541357999999999888774 7899999999988765
|
| >2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A | Back alignment and structure |
|---|
Probab=93.60 E-value=0.88 Score=36.90 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=56.5
Q ss_pred CCEEEEEEEEeeeecC---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE-eeEeecCCCCccEEE
Q 012529 29 GLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQKVEL 104 (461)
Q Consensus 29 ~~~v~v~G~v~~~R~~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~-G~~~~~~~~~~~~el 104 (461)
++.|.+.|.|.++-.. +....+.|.|.||. |-+++..+. ++.. +..|++|.|. |.+..-+ +.++|
T Consensus 15 ~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~--I~~t~W~~~----~~~~--~~~G~~V~i~n~~v~~~~---G~~~L 83 (109)
T 2kbn_A 15 GQWANLKAKVIQLWENTHESISQVGLLGDETGI--IKFTIWKNA----ELPL--LEQGESYLLRSVVVGEYN---DRFQV 83 (109)
T ss_dssp TCEEEEEEEEEEEEECCCSSEEEEEEEECTTCC--EEEEEEGGG----CCCC--CCTTCEEEEEEEEEEEET---TEEEE
T ss_pred CCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCe--EEEEEECcc----cccc--cCCCCEEEEEEEEEEEEC---CEEEE
Confidence 5779999999887542 33445789999975 998887632 1234 9999999999 6776643 25899
Q ss_pred EEeEEEEeccCCCC
Q 012529 105 KVNKIVLVGKSDPS 118 (461)
Q Consensus 105 ~~~~i~vl~~~~~~ 118 (461)
.+.+...+.+.+..
T Consensus 84 ~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 84 QVNKNSSIEKLSEP 97 (109)
T ss_dssp EECSSSEEEECSSC
T ss_pred EECCceEEEECCCc
Confidence 99877666655433
|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.058 Score=57.18 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=40.8
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~i 267 (461)
|+||+|+|||++..-+.+|.+||+|++.-+... |+.|+...+|.+++.+
T Consensus 226 RLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 699999999986531357999999999888774 7899999999988765
|
| >3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A | Back alignment and structure |
|---|
Probab=93.45 E-value=0.38 Score=39.98 Aligned_cols=71 Identities=11% Similarity=0.203 Sum_probs=49.6
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
+.|++|++-|+|.+++..|+.+-+.-.|+ +.++|.++.... .. + +.+|.|.|+|.. ..+|.+
T Consensus 20 fvgk~VrivGkV~~~~~~g~~~~l~s~Dg---~~Vtv~l~~p~~-----~~--l--~~~vEViG~V~~------~~tI~~ 81 (121)
T 3kdf_A 20 FIDKPVCFVGRLEKIHPTGKMFILSDGEG---KNGTIELMEPLD-----EE--I--SGIVEVVGRVTA------KATILC 81 (121)
T ss_dssp GTTCEEEEEEEEEEECTTSSEEEEECTTS---CEEEEECSSCCS-----SC--C--CSEEEEEEEECT------TSCEEE
T ss_pred hCCCeEEEEEEEEEEcCCCCEEEEEeCCC---CEEEEEeCCCCC-----cc--c--CcEEEEEEEECC------CCeEEE
Confidence 78999999999999997777543444455 347777654211 02 3 459999999953 346888
Q ss_pred eEEEEeccC
Q 012529 107 NKIVLVGKS 115 (461)
Q Consensus 107 ~~i~vl~~~ 115 (461)
..+.-++..
T Consensus 82 ~~~~~fg~~ 90 (121)
T 3kdf_A 82 TSYVQFKED 90 (121)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 888777754
|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.06 Score=49.44 Aligned_cols=113 Identities=13% Similarity=0.086 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCC-CCC-----CcceeeeecCCCcc---cccCCccccCCCcccc--CcCcc--
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDC-EGA-----GEQFCVTTLIPSSR---EAAESPVDAIPKTKDG--LIDWS-- 218 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-----~~~F~v~~~~~~~~---~~~~s~~~~l~~~~~~--~~~~~-- 218 (461)
.++.+.+|+.|...||.||-|-.+++... +.- .+. |.-.|+.+. .+.+|....|-...+- .-+..
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~--v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v 84 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNL--VMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADL 84 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGC--EEBSSGGGCSCCEECSCSHHHHHHHHHHC------CC
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCe--EEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCe
Confidence 36778899999999999999999987432 100 111 111222110 0111111010000000 00122
Q ss_pred eeEEEecccccCCCCCC-----CCccccccceeeecc-------------CCHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAF-------------ADLKDDMACATAYLQY 266 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~-----rHl~EFtmlE~e~a~-------------~d~~dlm~~~e~li~~ 266 (461)
|+||||+||+.++.+.. .+..|..+|-.-++. .|+.|+...+|.++..
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~ 150 (213)
T 3ig2_A 85 KFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKR 150 (213)
T ss_dssp EEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHH
Confidence 69999999997653211 234577777765544 3566777766666654
|
| >1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.25 Score=40.55 Aligned_cols=91 Identities=10% Similarity=0.185 Sum_probs=62.5
Q ss_pred eeeccccCCCcCCCCCCCCEEEEEEEEeee---e------cCCCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCC
Q 012529 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R------AQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLIT 81 (461)
Q Consensus 12 ~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~---R------~~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~ 81 (461)
+.|++|... ...++|+|||.++ | ..|++.=++|.|.+| .|++++..+.. .|. .. |.
T Consensus 5 ~~Is~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~f~--~~--l~ 70 (114)
T 1ynx_A 5 FAIEQLSPY--------QNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG--EIRATAFNDFATKFN--EI--LQ 70 (114)
T ss_dssp CCGGGCCTT--------TCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE--EEEEEECHHHHHHHH--HH--SC
T ss_pred EEHHHCCCC--------CCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC--eEEEEECHHHHHHHH--hh--cc
Confidence 456677653 2348888998854 2 236788889999997 59999976532 232 24 99
Q ss_pred CCcEEEEEe-eEeecCCC----CccEEEEEeEEEEeccCC
Q 012529 82 TGASIWIQG-NVVPSQGS----KQKVELKVNKIVLVGKSD 116 (461)
Q Consensus 82 ~g~~V~v~G-~~~~~~~~----~~~~el~~~~i~vl~~~~ 116 (461)
.|+++.+.+ .|...... ...+||....-+.+.+|.
T Consensus 71 eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 71 EGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp SSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred cCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 999999995 55554321 357899988777777774
|
| >2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=92.77 E-value=1.1 Score=36.18 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=60.2
Q ss_pred eeccccCCCcCCCCCCCCEEEEEEEEeeee-----cCCC---eEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCc
Q 012529 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-----AQSS---VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (461)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R-----~~~~---~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~ 84 (461)
.|+||.+. ...|.+.|.|.++- +.|+ +.=+.|.|.||. |.+.+..+ . +..||
T Consensus 5 kI~dl~pg--------~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~--I~~tlW~~--------~--l~~Gd 64 (106)
T 2k75_A 5 KIRDVSLS--------TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTAR--IRISSFGK--------Q--LQDSD 64 (106)
T ss_dssp CSTTCCTT--------CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCE--EEEEEESS--------C--CCTTE
T ss_pred EHHHcCCC--------CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCe--EEEEEEcC--------c--cCCCC
Confidence 46666542 23477777776642 2343 666788999974 88887754 2 88999
Q ss_pred EEEEE-eeEeecCCCCccEEEEEeEEEEeccCCCCCCCCc
Q 012529 85 SIWIQ-GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQK 123 (461)
Q Consensus 85 ~V~v~-G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl~~ 123 (461)
+|.+. |.+..-+ +.++|.+.+...+.+.....|+..
T Consensus 65 vv~i~ng~v~~~~---g~~~L~v~~~~~I~~~~~~~~~~~ 101 (106)
T 2k75_A 65 VVRIDNARVAQFN---GYLSLSVGDSSRIESVNVNIPLEH 101 (106)
T ss_dssp EEEEEEEEEEEET---TEEEEEECTTSEEEECCSCCCCSC
T ss_pred EEEEEeeEEeEEC---CEEEEEECCcEEEEECCCCCcccc
Confidence 99999 7776543 358999988777777665466643
|
| >2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C | Back alignment and structure |
|---|
Probab=92.01 E-value=0.93 Score=38.67 Aligned_cols=71 Identities=11% Similarity=0.146 Sum_probs=46.2
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
+.|++|++.|+|.++-..|+.+ .+....+ ..|+|.++... . -..+-+|.|.|+|.. +.+|.+
T Consensus 41 fvGk~VriVGkV~~~~~~G~~~--~l~s~Dg-~~VtV~l~~pL-------~--~~~~~~VEViG~V~~------~~tI~~ 102 (142)
T 2pi2_E 41 FIDKPVCFVGRLEKIHPTGKMF--ILSDGEG-KNGTIELMEPL-------D--EEISGIVEVVGRVTA------KATILC 102 (142)
T ss_dssp STTCEEEEEEEEEEECTTSSEE--EEECTTS-CEEEEECSSCC-------S--SCCCSEEEEEEEECT------TSCEEE
T ss_pred hCCCEEEEEEEEeEEcCCCCEE--EEEeCCC-cEEEEEeCCCC-------C--ccCCCEEEEEEEECC------CCcEEE
Confidence 7899999999999884344433 5554433 34676654321 1 234779999999943 345777
Q ss_pred eEEEEeccC
Q 012529 107 NKIVLVGKS 115 (461)
Q Consensus 107 ~~i~vl~~~ 115 (461)
..+.-++..
T Consensus 103 ~~~~~fGd~ 111 (142)
T 2pi2_E 103 TSYVQFKED 111 (142)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 777666653
|
| >1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 | Back alignment and structure |
|---|
Probab=91.95 E-value=0.73 Score=37.95 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=52.3
Q ss_pred EEEEEEEEeee---ec----CC--CeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEE-eeEeecCCCCc
Q 012529 31 MIVVAGWVRTL---RA----QS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQ 100 (461)
Q Consensus 31 ~v~v~G~v~~~---R~----~~--~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~-G~~~~~~~~~~ 100 (461)
.|.+.|.|.++ |. .| .+.=+.|.|.||. |.+.+..+.. .. +..|++|.|. |.+..-+ +
T Consensus 14 ~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~--I~~tlW~~~~-----~~--~~~G~vv~i~~g~v~~~~---g 81 (119)
T 1o7i_A 14 SVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGR--VKLTLWGKHA-----GS--IKEGQVVKIENAWTTAFK---G 81 (119)
T ss_dssp SEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEE--EEEEEEGGGT-----TC--CCTTCEEEEEEEEEEEET---T
T ss_pred cEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCE--EEEEEECChh-----hc--CCCCCEEEEEeEEEEEeC---C
Confidence 58888999877 41 24 3566778899974 8988876432 24 8999999999 8886643 2
Q ss_pred cEEEEEeEEEEeccCC
Q 012529 101 KVELKVNKIVLVGKSD 116 (461)
Q Consensus 101 ~~el~~~~i~vl~~~~ 116 (461)
.++|.+.+...+.++.
T Consensus 82 ~~qL~i~~~~~i~~~~ 97 (119)
T 1o7i_A 82 QVQLNAGSKTKIAEAS 97 (119)
T ss_dssp EEEEEECTTCEEEECC
T ss_pred EEEEEECCCEEEEEcC
Confidence 5899988755555543
|
| >4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=91.91 E-value=0.3 Score=40.15 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=44.3
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
+.|+.|++-|+|.+.+. + . +.|..+.+ +.|+|.++... . +..+.+|.|.|++.....+-|+..|.+
T Consensus 16 ~~g~~VrivGkV~~~~g--~-~-~~l~s~d~-~~Vtv~l~~~~-------~--~~~~~~vEViG~V~~~~~~~~~~~I~~ 81 (114)
T 4gop_A 16 YVGQTVRIVGKVHKVTG--N-T-LLMQTSDL-GNVEIAMTPDS-------D--VSSSTFVEVTGKVSDAGSSFQANQIRE 81 (114)
T ss_dssp GTTSEEEEEEEEEEEET--T-E-EEEECTTS-CEEEEECCSSC-------C--GGGCSEEEEEEEECTTSSEEEEEEEEE
T ss_pred hCCCeEEEEEEEeeeCC--C-E-EEEEeCCC-CEEEEEeCCCC-------C--cccCcEEEEEEEEcCCCCcccCCeEEE
Confidence 68999999999999996 2 2 45664333 34777665432 2 557899999999964322212355555
Q ss_pred eE
Q 012529 107 NK 108 (461)
Q Consensus 107 ~~ 108 (461)
..
T Consensus 82 ~~ 83 (114)
T 4gop_A 82 FT 83 (114)
T ss_dssp CS
T ss_pred EE
Confidence 33
|
| >3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A | Back alignment and structure |
|---|
Probab=91.52 E-value=0.48 Score=39.00 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=40.8
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCCC
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~Pl 121 (461)
|+||+..+.... ++. |+.|+-|.|+|.+.........++|++++|+.|+.....-|+
T Consensus 49 i~vv~~Gk~AE~--~~~--l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~~~~~~~~ 105 (115)
T 3fhw_A 49 ISAVALGDLALL--LAD--TPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSMGRDPL 105 (115)
T ss_dssp EEEEEETHHHHH--HTT--CCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCCSCCC---
T ss_pred EEEEEEhHHHHh--hhc--cCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCCCCCCCCc
Confidence 788887654322 345 999999999999987433335799999999999876544555
|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=90.43 E-value=0.19 Score=46.05 Aligned_cols=114 Identities=16% Similarity=0.048 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhhCCcEEEecceeecCCC-CCC-----CcceeeeecCCCcc---cccCCccccCCCcccc--CcCcc--
Q 012529 152 NALAYATHKFFQENGFIWISSPIITASDC-EGA-----GEQFCVTTLIPSSR---EAAESPVDAIPKTKDG--LIDWS-- 218 (461)
Q Consensus 152 s~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~-----~~~F~v~~~~~~~~---~~~~s~~~~l~~~~~~--~~~~~-- 218 (461)
.++.+.+|+.|...||.||-|-.+++... +.. .+. |.-.|+.+. .+.+|....|-...+- .-+..
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~--v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~ 84 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMA--VELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSL 84 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGC--CBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCe--EEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCe
Confidence 36778899999999999999999987431 100 011 111122110 0111111000000000 01122
Q ss_pred eeEEEecccccCCCCC-----CCCccccccceeeecc-------------CCHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNT-----SRHLAEFWMIEPELAF-------------ADLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t-----~rHl~EFtmlE~e~a~-------------~d~~dlm~~~e~li~~i 267 (461)
|+||||+||+.++... ..+..|..+|-.-++. .|+.|+...+|.++..+
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 85 YLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred eEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 6999999999754210 1234577777665543 47888888888877654
|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
Probab=89.18 E-value=0.38 Score=52.69 Aligned_cols=106 Identities=10% Similarity=0.004 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhhCCcEEEecceeecCCC----CCCCcceeeeecCCCcc---cccCCccccCCCcccc----C-cCcc
Q 012529 151 RNALAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLIPSSR---EAAESPVDAIPKTKDG----L-IDWS 218 (461)
Q Consensus 151 Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----eg~~~~F~v~~~~~~~~---~~~~s~~~~l~~~~~~----~-~~~~ 218 (461)
..++.+.+|+.|...||.|+-|-.+++... ....+.+.+ .|+.+. .+.++....+-...+. + ..=-
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L--~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~v 568 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLL--LNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERA 568 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEE--SSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEE--cCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCe
Confidence 456788899999999999999988887531 001222333 122110 1111111000000000 0 0113
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeecc------------CCHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAF------------ADLKDDMACATAYLQYV 267 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~------------~d~~dlm~~~e~li~~i 267 (461)
|+||+|+||| + .|+.++..=++. .|+.|+...+|.++..+
T Consensus 569 rlFEiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 569 LLFEVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 7999999999 2 688888865544 47889999999888765
|
| >1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1 | Back alignment and structure |
|---|
Probab=87.79 E-value=4.5 Score=34.06 Aligned_cols=76 Identities=20% Similarity=0.347 Sum_probs=54.7
Q ss_pred CCCCCEEEEEEEEe--eeecC---CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCc
Q 012529 26 DRVGLMIVVAGWVR--TLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ 100 (461)
Q Consensus 26 ~~~~~~v~v~G~v~--~~R~~---~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~ 100 (461)
...|+.++|.|.|. ++... ..+.| .|.|+. ..|.|....-.++ . .+-|.-|.|+|++...
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~--~~v~V~Y~GilPD-----l--FrEGqgVVa~G~l~~~----- 89 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTF-TIYDAE--GSVDVSYEGILPD-----L--FREGQGVVVQGELEKG----- 89 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEE-EEECSS--CEEEEEEESCCCT-----T--CCTTSEEEEEEEECSS-----
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEE-EEEeCC--cEEEEEECCCCCc-----c--ccCCCeEEEEEEECCC-----
Confidence 35789999999998 45432 34676 668875 4699998876543 2 6779999999999541
Q ss_pred cEEEEEeEEEEeccCCCCC
Q 012529 101 KVELKVNKIVLVGKSDPSY 119 (461)
Q Consensus 101 ~~el~~~~i~vl~~~~~~~ 119 (461)
-.+.+++ ||.||+..|
T Consensus 90 -g~F~A~e--VLAKhdekY 105 (136)
T 1sr3_A 90 -NHILAKE--VLAKHDENY 105 (136)
T ss_dssp -SEEEESS--CBCCSCCCC
T ss_pred -CeEEEEE--EEecCCCCC
Confidence 2356655 899998764
|
| >1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A | Back alignment and structure |
|---|
Probab=86.59 E-value=5.6 Score=33.50 Aligned_cols=76 Identities=22% Similarity=0.306 Sum_probs=51.2
Q ss_pred CCCCCEEEEEEEEe--eeecC---CCeEEEEEEc-CccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCC
Q 012529 26 DRVGLMIVVAGWVR--TLRAQ---SSVTFIEVND-GSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK 99 (461)
Q Consensus 26 ~~~~~~v~v~G~v~--~~R~~---~~~~Fi~l~D-~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~ 99 (461)
...|+.++|.|.|. ++.+. ..+.| .|.| +. ..|.|+.+.-.++ . .+-|.-|.|+|++... +
T Consensus 29 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~--~~v~V~Y~GilPD-----l--FrEGqgVVa~G~l~~~--g- 95 (136)
T 1j6q_A 29 PEAGQRIRVGGMVTVGSMVRDPNSLHVQF-AVHDSLG--GEILVTYDDLLPD-----L--FREGQGIVAQGVLGED--G- 95 (136)
T ss_dssp SCTTCEEEEEEEECTTCCEECTTSSCEEE-EEECTTC--CCEEEEECSCCTT-----S--CCSSSEEEEEEEECST--T-
T ss_pred CCCCCEEEEeEEEeCCcEEecCCCCEEEE-EEEcCCC--CEEEEEECCCCCc-----c--ccCCCeEEEEEEECCC--C-
Confidence 36789999999996 45432 45776 5678 54 4589988765542 2 6789999999999542 1
Q ss_pred ccEEEEEeEEEEeccCCCCC
Q 012529 100 QKVELKVNKIVLVGKSDPSY 119 (461)
Q Consensus 100 ~~~el~~~~i~vl~~~~~~~ 119 (461)
.+++++ ||.||+..|
T Consensus 96 ---~F~A~e--VLaKhdekY 110 (136)
T 1j6q_A 96 ---KLAATE--VLAKHDENY 110 (136)
T ss_dssp ---SEEEEE--EECCC----
T ss_pred ---eEEEEE--EEecCCCCC
Confidence 255654 899998764
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
Probab=85.75 E-value=0.25 Score=51.42 Aligned_cols=29 Identities=34% Similarity=0.646 Sum_probs=25.0
Q ss_pred cCCC-CCccccccHHHHHHHHcCCCCcccc
Q 012529 421 YGSV-PHAGFGLGFERLVQFATGVENIRDA 449 (461)
Q Consensus 421 ~G~p-P~gG~giGidRLvm~l~g~~~Irdv 449 (461)
+|++ |.-.||||+|||+|++.|.++||+.
T Consensus 317 ~gi~~~v~afeLgLErLaMl~~gi~DIR~~ 346 (534)
T 2du3_A 317 YDIPYPVMNLGLGVERLAMILYGYDDVRKM 346 (534)
T ss_dssp TTCCSCEEEEEEEHHHHHHHHTTCSCHHHH
T ss_pred cCCCCcEEEEEecHHHHHHhhcCCchhhhh
Confidence 4554 6788999999999999999999875
|
| >2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* | Back alignment and structure |
|---|
Probab=85.53 E-value=0.81 Score=52.24 Aligned_cols=80 Identities=11% Similarity=0.202 Sum_probs=47.9
Q ss_pred CCCCEEEEEEEEeeeecC---C--CeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCcc
Q 012529 27 RVGLMIVVAGWVRTLRAQ---S--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~---~--~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~ 101 (461)
..|+.|+|+|.|.++|.. + .++|+.|.|.+|. +.|++-++. |++.+ ..|..+.+|.|+|+|.... .
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~--~evvvf~~~--~~~~~-~~l~~~~~~~v~G~v~~~~----~ 1110 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGA--LEVVVFGRA--YEGVS-PKLKEDIPLLVLAEVEKGE----E 1110 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEE--EEEC----------------CTTCEEEEEEEEC--------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCC--EEEEEcHHH--HHHHH-HHhccCCEEEEEEEEEECC----C
Confidence 357889999999998763 2 4999999999974 888876653 33332 2389999999999997643 3
Q ss_pred EEEEEeEEEEeccC
Q 012529 102 VELKVNKIVLVGKS 115 (461)
Q Consensus 102 ~el~~~~i~vl~~~ 115 (461)
+.|.++++.-++.+
T Consensus 1111 ~~l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1111 LRVLAQAVWTLEEV 1124 (1220)
T ss_dssp -CEEEEEEEEHHHH
T ss_pred cEEEEeeeecHHHH
Confidence 67888888877654
|
| >3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090} | Back alignment and structure |
|---|
Probab=83.98 E-value=1.7 Score=34.92 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=35.6
Q ss_pred EEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEe
Q 012529 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLV 112 (461)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl 112 (461)
++|++-.+.. + +.. |..|+-|.|+|.+.........+.|++++|+.+
T Consensus 55 i~vv~~gk~A--e-~~~--l~KG~~v~veGrL~~rs~~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQA--E-EWQ--YRQGDCATVEGFLAQKSRRSLMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHHH--H-HST--TCTTCEEEEEEEEEESSSSCCCEEEEEEEEEEC
T ss_pred EEEEEEhHHh--h-hhc--cCCCCEEEEEEEEEECccCCccEEEEEEEEEEc
Confidence 5666654432 2 444 999999999999987765555799999999876
|
| >1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A | Back alignment and structure |
|---|
Probab=82.85 E-value=1.9 Score=39.92 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=61.4
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCC
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLI 80 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~---R~------~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l 80 (461)
-+.|++|... ...++|+|||.++ |. .|++.-++|.|.+| .|++++..+.. .| ... |
T Consensus 8 ~~~I~~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~~--~~~--l 73 (246)
T 1jmc_A 8 VVPIASLTPY--------QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQVDKF--FPL--I 73 (246)
T ss_dssp BCCGGGCCTT--------CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHHHHH--GGG--C
T ss_pred eEEHHHCCCC--------CCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC--eEEEEEChHHHHHh--hhh--c
Confidence 3567777653 2357899999875 31 35667788999998 59999886432 12 123 9
Q ss_pred CCCcEEEEEe-eEeecC----CCCccEEEEEeEEEEeccCC
Q 012529 81 TTGASIWIQG-NVVPSQ----GSKQKVELKVNKIVLVGKSD 116 (461)
Q Consensus 81 ~~g~~V~v~G-~~~~~~----~~~~~~el~~~~i~vl~~~~ 116 (461)
..|+++.+++ .|.+.. ...+.+||....-+.+.+|.
T Consensus 74 ~~G~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 74 EVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp CTTCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred ccCCEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEcc
Confidence 9999999996 454432 12357899887655566654
|
| >3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=82.10 E-value=6 Score=30.76 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=46.6
Q ss_pred CCCCCEEEEEEEEeeeecC----CCeEEEE-EEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecC
Q 012529 26 DRVGLMIVVAGWVRTLRAQ----SSVTFIE-VNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (461)
Q Consensus 26 ~~~~~~v~v~G~v~~~R~~----~~~~Fi~-l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~ 96 (461)
+..|+-|.|+|-|..+|+. |...||. .||......-.+.++-..-+...... |..|++..+.|.+....
T Consensus 46 dylgkwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgshnsadvea--lsngsvativgqvhqvq 119 (133)
T 3f1z_A 46 DYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEA--LSNGSVATIVGQVHQVQ 119 (133)
T ss_dssp HHTTCEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEGGGHHHHTT--CCTTSEEEEEEECCCCC
T ss_pred hhhcceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccCCcchhhHh--hcCCceeeEeeeeeeee
Confidence 3578999999999999984 6677775 68875432223333322222233556 99999999999986543
|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=80.80 E-value=0.47 Score=47.82 Aligned_cols=48 Identities=23% Similarity=0.428 Sum_probs=32.5
Q ss_pred ccccccCCce-eeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCC
Q 012529 374 AMDMLVPRIG-ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 443 (461)
Q Consensus 374 ~fdl~~~G~~-Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~ 443 (461)
-|+.+.+|.| .|++|+- |+.|.+.+ | |-.|..||+||+|||+.++-..
T Consensus 282 vFe~~~~~~g~~i~~GGR----YD~L~~~f---G---------------~~~pavGfaiglerL~~~l~~~ 330 (400)
T 3od1_A 282 VFEGYGNRLGVPLCSGGR----YDELLSKF---H---------------RPAQATGFGVRIDLLVEALNGE 330 (400)
T ss_dssp EEEEEETTCSSEEEEEEE----CTTHHHHT---T---------------CCCCEEEEEEEHHHHHHHHCC-
T ss_pred EEEEEECCCCCeeecccc----cchhhhcc---C---------------CCCCEEEEEeeHHHHHHHHHhc
Confidence 4888888764 7777774 33333222 1 2258999999999999988654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 461 | ||||
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 5e-67 | |
| d1eova2 | 353 | d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As | 8e-63 | |
| d1nnha_ | 293 | d.104.1.1 (A:) Hypothetical protein PF1951 {Archae | 8e-60 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 4e-58 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 9e-55 | |
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 1e-51 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 7e-49 | |
| d1n9wa1 | 93 | b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) | 3e-12 | |
| d1b8aa1 | 103 | b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS | 1e-10 | |
| d1eova1 | 134 | b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspR | 7e-09 | |
| d1l0wa1 | 104 | b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS | 3e-05 | |
| d1c0aa1 | 106 | b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS | 7e-05 |
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 214 bits (546), Expect = 5e-67
Identities = 84/322 (26%), Positives = 138/322 (42%), Gaps = 24/322 (7%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
++ R A +V+ AL ++ F I +P + + EG F V
Sbjct: 3 YVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYF--- 59
Query: 196 SREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKD 255
+ A + + + +VY P +R E +TSRHL E+ ++ E+ F ++
Sbjct: 60 -EKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEE 118
Query: 256 D-MACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL 314
D M A L ++ L+ +++ +D +L++ +A +L
Sbjct: 119 DLMRLEEALLAEMLEEALNTAGDEIRLLGATWPS---------FPQDIPRLTHAEAKRIL 169
Query: 315 IKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRT 371
K E G DL E ER L E E +G + V+ YP+ ++ FY +DG T
Sbjct: 170 -----KEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTT 224
Query: 372 VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGL 431
+ L+ R E+ G QR R E L L ++ +++ YL++ YG PH GF +
Sbjct: 225 RS--FDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAI 282
Query: 432 GFERLVQFATGVENIRDAIPFP 453
G ERL Q G+ N+R A FP
Sbjct: 283 GAERLTQKLLGLPNVRYARAFP 304
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 205 bits (522), Expect = 8e-63
Identities = 80/328 (24%), Positives = 140/328 (42%), Gaps = 10/328 (3%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
+ RT T A+ R++ + ++ F + +P + + EG F VT
Sbjct: 32 VIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYF--- 88
Query: 196 SREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKD 255
+A + K + + D+ +VY GP FRAENSNT RH+ EF ++ E+AF +
Sbjct: 89 KGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYH 148
Query: 256 DMACATAYLQY-VVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL 314
++ + L + + +++ ++ + V+L+Y + IE+L
Sbjct: 149 EVLDTLSELFVFIFSELPKRFAHEIELVRKQYP---VEEFKLPKDGKMVRLTYKEGIEML 205
Query: 315 IKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAA 374
A K+ + + + L + + I+ +P EI+ FY + +
Sbjct: 206 RAAGKEIGDFEDLSTENEKFLGK-LVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSN 264
Query: 375 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD--SYWWYLDLRHYGSVPHAGFGLG 432
R E++ G+QR L+ R+ L+ + Y D YG PHAG G+G
Sbjct: 265 SYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIG 324
Query: 433 FERLVQFATGVENIRDAIPFPRTPGSVE 460
ER+V F ++NIR A FPR P +
Sbjct: 325 LERVVMFYLDLKNIRRASLFPRDPKRLR 352
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 195 bits (497), Expect = 8e-60
Identities = 64/329 (19%), Positives = 114/329 (34%), Gaps = 49/329 (14%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIW----ISSPIITASDCEGAGEQFCVTT 191
+ + ++ + FF + GF W I SPI + AGE
Sbjct: 2 AVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAE 61
Query: 192 LIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAEN--SNTSRHLAEFWMIEPELA 249
+ + + + K + +++ P R E+ + RH EF ++ E+
Sbjct: 62 VEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVE 121
Query: 250 FADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD 309
A ++D M + + R + + +
Sbjct: 122 RAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRF------------------------ 157
Query: 310 AIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG 369
+ FE+ SE + + + I + + DG
Sbjct: 158 ---------EVFEY---------SEVLEEFGSDEKASQEMEEPFWIINIPREFYDREVDG 199
Query: 370 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV-PHAG 428
+L GE+ G +RE E + ++ + LN DS+ YL++ G + P AG
Sbjct: 200 FWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAG 259
Query: 429 FGLGFERLVQFATGVENIRDAIPFPRTPG 457
G+G ERLV+F G ++I + PFPR PG
Sbjct: 260 AGIGVERLVRFIVGAKHIAEVQPFPRIPG 288
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 192 bits (489), Expect = 4e-58
Identities = 94/345 (27%), Positives = 152/345 (44%), Gaps = 14/345 (4%)
Query: 117 PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIIT 176
P P K + + + R A+ ++R+++ A FF ENGFI I +P I
Sbjct: 3 PLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKII 62
Query: 177 ASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSR 236
A+ EG E F + + A + GL + P FRAE NT+R
Sbjct: 63 ATATEGGTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYE---IAPIFRAEEHNTTR 119
Query: 237 HLAEFWMI-EPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLS 295
HL E W I D ++ M+ + + + Y+ ++ +++D N +E+ +
Sbjct: 120 HLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLP--- 176
Query: 296 TVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYP 355
F ++SY A+E+L K+ + + + +Y+ E + YP
Sbjct: 177 ------FPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGKYMMEN-ENAPLYFLYQYP 229
Query: 356 KEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWY 415
E K FY+ + D+ + L R E+ G QRE R + L ++ E LN +S+ +Y
Sbjct: 230 SEAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEFY 289
Query: 416 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 460
L YG PH GFGLG ERL++ + NIR+ I FPR +
Sbjct: 290 LKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLT 334
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 184 bits (467), Expect = 9e-55
Identities = 60/330 (18%), Positives = 107/330 (32%), Gaps = 20/330 (6%)
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
+ VR+ + A +F GF+ + +P++ + F +T +
Sbjct: 15 ANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPF-ITHHNALDLDM 73
Query: 200 AESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMAC 259
+ K ++ + + RH EF M+E +A+AD D +
Sbjct: 74 YLRIAPELYL-KRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIEL 132
Query: 260 ATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA------ERDFVQLSYTDAIEL 313
+ + + + +L K K A E D L DA +
Sbjct: 133 TESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKA 192
Query: 314 LIKAKKKFEFLVKWGCD-LQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTV 372
L + WG + +E + E P +++YP E+ R + +
Sbjct: 193 LAE-SIGITVEKSWGLGRIVTEIFDEVAEAHLI-QPTFITEYPAEVSPLARRNDVNPEIT 250
Query: 373 AAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS--------YWWYLDLRHYGSV 424
+ + E+ G E R E + + Y+ YG
Sbjct: 251 DRFEFFIGG-REIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLP 309
Query: 425 PHAGFGLGFERLVQFATGVENIRDAIPFPR 454
P AG G+G +R++ T IRD I FP
Sbjct: 310 PTAGLGIGIDRMIMLFTNSHTIRDVILFPA 339
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 176 bits (446), Expect = 1e-51
Identities = 76/348 (21%), Positives = 128/348 (36%), Gaps = 38/348 (10%)
Query: 120 PIQKKRVSREFLRTKA-HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
P+ V+ E R K +L R + R + +F ++GF+ I +P++T +
Sbjct: 3 PLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKA 62
Query: 179 DCEGAGEQFCVTTLIPSSREA-AESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRH 237
EGA + + + A +SP D Y FR E+ R
Sbjct: 63 TPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDR--YYQIVKCFRDEDLRADRQ 120
Query: 238 LAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 297
EF I+ E +F A ++++ L+ D+ F R +
Sbjct: 121 -PEFTQIDVETSFMTAPQVREVMEALVRHLW---LEVKGVDLGDFPVMTFAEAERRYGSD 176
Query: 298 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL---QSEHERYLTEEAFGGCPVIVSDY 354
+ + ++ W D + + E LT
Sbjct: 177 KP----------------DLRDESKWAPLWVIDFPMFEDDGEGGLTAMHH------PFTS 214
Query: 355 PKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RD 410
PK++ A ++ + A DM++ E+ GGS R + + L +N R+
Sbjct: 215 PKDMTAAELKAAPENAVANAYDMVING-YEVGGGSVRIHNGDMQQTVFGILGINEEEQRE 273
Query: 411 SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 458
+ + LD YG+ PHAG G +RL TG +NIRD I FP+T +
Sbjct: 274 KFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAA 321
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 168 bits (427), Expect = 7e-49
Identities = 71/353 (20%), Positives = 124/353 (35%), Gaps = 37/353 (10%)
Query: 117 PSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169
P +P+ S E +L R R+R+ + A F GF+
Sbjct: 2 PPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQ 61
Query: 170 ISSPIITASDCEGAGEQFCVTTLIPSSREA-AESPVDAIPKTKDGLIDWSQVYTFGPTFR 228
+ +P +T S EGA + P A +SP + K + + + FR
Sbjct: 62 VETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSP--QLFKQMLMVAGLDRYFQIARCFR 119
Query: 229 AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEK 288
E+ +F ++ E++F +++D + + +V R L ++ E
Sbjct: 120 DEDLRA-DRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEA 178
Query: 289 GIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCP 348
Y L + +F ++V + E E T
Sbjct: 179 MER---------------YGSDKPDLRREGFRFLWVVDFPLLEWDEEEEAWTYM----HH 219
Query: 349 VIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN 408
S +P++ + + D GR A LV E+ GGS R L +
Sbjct: 220 PFTSPHPED---LPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIG 276
Query: 409 RDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 457
+ + ++L+ YG+ PH G G +RL+ TG +IR+ I FP+
Sbjct: 277 EEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKE 329
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 60.2 bits (146), Expect = 3e-12
Identities = 12/95 (12%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS 85
VG + + G++ R + F+ + D S + + +
Sbjct: 10 AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPES-----------A 58
Query: 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+ ++G VV + + +E++ ++ ++ + P
Sbjct: 59 LRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTP 93
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 56.2 bits (135), Expect = 1e-10
Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + + + + +
Sbjct: 15 NGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQI-TAPKKKVDPELFKLIPKLRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSD 116
++G V + +K E+ KIV++ +++
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAE 102
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.0 bits (124), Expect = 7e-09
Identities = 16/117 (13%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q + + F+ + + L
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANK 75
Query: 68 DAEGYDQ--VKSGLITTGASIWIQGNVVPS-----QGSKQKVELKVNKIVLVGKSDP 117
+ +G + + + ++G V + Q +E+ + KI + ++
Sbjct: 76 EGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPE 132
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 40.8 bits (95), Expect = 3e-05
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L + + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVA----HPASPAYATAERVRPEWVVR 70
Query: 88 IQGNVVPSQGSKQK-----VELKVNKIVLVGKS 115
+G V + VE++++ + ++ ++
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 39.6 bits (92), Expect = 7e-05
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R S+ FI++ D + + + + I
Sbjct: 14 VGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRA---DALKLASELRNEFCIQ 70
Query: 88 IQGNVVPSQGSKQ-------KVELKVNKIVLVGKSD 116
+ G V ++E+ + + ++ ++D
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD 106
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 461 | |||
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 100.0 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 100.0 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 100.0 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 100.0 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 100.0 | |
| d1b8aa1 | 103 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 99.87 | |
| d1n9wa1 | 93 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.85 | |
| d1l0wa1 | 104 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.84 | |
| d1c0aa1 | 106 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 99.82 | |
| d1e1oa1 | 143 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 99.77 | |
| d1eova1 | 134 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 99.74 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 99.19 | |
| d12asa_ | 327 | Asparagine synthetase {Escherichia coli [TaxId: 56 | 99.16 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 98.39 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 98.24 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 98.06 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 97.94 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 97.71 | |
| d1qf6a4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Escherichia coli | 97.6 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 97.47 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 97.28 | |
| d1b76a2 | 331 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 97.11 | |
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 96.94 | |
| d2pi2a1 | 128 | Replication protein A 32 KDa subunit (RPA32) fragm | 96.35 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 96.3 | |
| d1nj1a3 | 265 | Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth | 96.25 | |
| d1seta2 | 311 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 96.01 | |
| d1nnxa_ | 106 | Hypothetical protein YgiW {Escherichia coli [TaxId | 95.61 | |
| d1usya_ | 275 | ATP phosphoribosyltransferase regulatory subunit H | 95.16 | |
| d1jmca1 | 116 | Replication protein A 70 KDa subunit (RPA70) {Huma | 94.69 | |
| d1o7ia_ | 115 | Archaeal ssDNA-binding protein {Archaeon Sulfolobu | 94.65 | |
| d2pi2e1 | 115 | Replication protein A 14 KDa (RPA14) subunit {Huma | 94.26 | |
| d1g5ha2 | 290 | The aaRS-like accessory subunit of mitochondrial p | 92.34 | |
| d1gm5a2 | 180 | RecG "wedge" domain {Thermotoga maritima [TaxId: 2 | 89.83 | |
| d1jjcb5 | 207 | Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, | 82.66 | |
| d1sr3a_ | 114 | Heme chaperone CcmE {Escherichia coli [TaxId: 562] | 81.3 |
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-76 Score=596.67 Aligned_cols=323 Identities=26% Similarity=0.408 Sum_probs=271.3
Q ss_pred CChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccc
Q 012529 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205 (461)
Q Consensus 126 ~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~ 205 (461)
.+.++..++||||+|++.++++||+||+|++++|+||.++||+||+||+|++++|||++++|.+++++. ..+|.+||++
T Consensus 22 ~~~e~r~~~R~lDlr~~~~~~ilr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~eg~~~~f~~~~~~~-~~yL~~Spel 100 (353)
T d1eova2 22 VNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKG-KAYLAQSPQF 100 (353)
T ss_dssp CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEEETTE-EEEECSCTHH
T ss_pred CCHHHHhhhhHHhhCCHhHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCcchhccccceeeCC-cceeccchhh
Confidence 356666699999999999999999999999999999999999999999999999999999999998876 4679999987
Q ss_pred cCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCC-HHHHHHHHHHHHHHHHHHHHhcCcchhccccc
Q 012529 206 AIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQYVVRYILDNCKEDMDFFNT 284 (461)
Q Consensus 206 ~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d-~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~ 284 (461)
+++++..+ |++||||||||||||++++.||||||||||||++|.| ++++|+++|++++++++.+...+...++.+..
T Consensus 101 ~lk~ll~~--g~~~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d~~~~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~ 178 (353)
T d1eova2 101 NKQQLIVA--DFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRK 178 (353)
T ss_dssp HHHHHHHT--TCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hhhhhhhc--ccccceeechhhhccccccccccchhcccccccccchhhHHHHHHHHHHHhhhccccchhhhhhhhhhcc
Confidence 77665443 5999999999999999988899999999999999997 89999999999999999998877665544432
Q ss_pred cccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhc----hhhhcccCCCeeeeeCCccCCc
Q 012529 285 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERY----LTEEAFGGCPVIVSDYPKEIKA 360 (461)
Q Consensus 285 ~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~----l~e~~~~~~p~~i~~~P~~~~p 360 (461)
..... ........++.++++.||+++|++.+.... ...++....++. +.+.+ ...++||+|||.+++|
T Consensus 179 ~~~~~---~~~~~~~~~~~ri~~~ea~~~l~~~~~~~~----~~~~~~~~~~~~l~~~i~~~~-~~~~~~i~~~P~~~~p 250 (353)
T d1eova2 179 QYPVE---EFKLPKDGKMVRLTYKEGIEMLRAAGKEIG----DFEDLSTENEKFLGKLVRDKY-DTDFYILDKFPLEIRP 250 (353)
T ss_dssp HSCCC---CCCCCTTCCCEEEEHHHHHHHHHHTTCCCC----TTCCCCHHHHHHHHHHHHHHS-CCSEEEEECCBGGGSC
T ss_pred cCccc---eeeccCCCceeeeehHhhHHHHHHHhhhcc----cccccchhhHHHHHHHHHhhc-cCCcccccCCcHHHhh
Confidence 21110 011123457889999999999998764422 233444444443 33333 3357799999999999
Q ss_pred cccccCC-CccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCccc--HHHHHHHhccCCCCCccccccHHHHH
Q 012529 361 FYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS--YWWYLDLRHYGSVPHAGFGLGFERLV 437 (461)
Q Consensus 361 f~~~~~~-~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~--~~~yl~a~~~G~pP~gG~giGidRLv 437 (461)
||++.++ +++++++||||++|+ ||+|||+|+|++++|++++++.|++++. ++|||+|++||+|||||||||||||+
T Consensus 251 ~~~~~~~~~~~~a~rfeL~~~G~-El~nG~~e~~d~~~~~~r~~~~~~~~~~~~~~~yl~al~~G~PP~~G~glGiDRL~ 329 (353)
T d1eova2 251 FYTMPDPANPKYSNSYDFFMRGE-EILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVV 329 (353)
T ss_dssp TTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHH
T ss_pred hhhCCChhhhhhhhceeeeeece-EEcceecccCCHHHHHHHHHHcCCChhhhHHHHHHHHhHcCCCCCceeeeHHHHHH
Confidence 9977654 456789999999994 9999999999999999999999998764 79999999999999999999999999
Q ss_pred HHHcCCCCccccccCCCCCCCCC
Q 012529 438 QFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 438 m~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
|++||.+|||||++|||+++||.
T Consensus 330 m~l~~~~~Irdvi~FPr~~~~~~ 352 (353)
T d1eova2 330 MFYLDLKNIRRASLFPRDPKRLR 352 (353)
T ss_dssp HHHTTCSSGGGGCSSCCBTTBCC
T ss_pred HHHhCCCcHHheeCCCCCCCCCC
Confidence 99999999999999999999985
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=100.00 E-value=4.8e-72 Score=560.90 Aligned_cols=324 Identities=31% Similarity=0.522 Sum_probs=276.5
Q ss_pred CCCCcc---cCChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCC
Q 012529 119 YPIQKK---RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195 (461)
Q Consensus 119 ~Pl~~~---~~~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~ 195 (461)
+|++.. +.+.++..++||||+|++.++++|++||+++++||+||.++||+||+||+|+.++++|++++|.+++.+.
T Consensus 2 lp~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gflEV~TPil~~~~~~~~~~~f~~~~~~~- 80 (335)
T d1b8aa2 2 LPLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEE- 80 (335)
T ss_dssp CSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCCSSSSSCCEEEETTE-
T ss_pred CCCCcCCCCCCCHHHHhhchhheeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCccCCchhhhhcccccccc-
Confidence 455433 3355666689999999999999999999999999999999999999999999999999999999887765
Q ss_pred cccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHHHhc
Q 012529 196 SREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDN 274 (461)
Q Consensus 196 ~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-d~~dlm~~~e~li~~i~~~~~~~ 274 (461)
..++++||+++++++.++ |+++|||||||||||++++.||++||||+|+|+++. +++++|+++++++..+.+.+...
T Consensus 81 ~~yL~~SpE~~lkrll~~--g~~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~ 158 (335)
T d1b8aa2 81 DAFLAESPQLYKEIMMAS--GLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREH 158 (335)
T ss_dssp EEEECSCSHHHHHHGGGT--TCCEEEEEEEEECCCSSCCSSCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccChHHHHHHHHhh--hhhhHHHhhcccccccccccccchHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhc
Confidence 578899998887765554 589999999999999998889999999999888875 89999999999999999998877
Q ss_pred CcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhh----hchhhhcccCCCee
Q 012529 275 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHE----RYLTEEAFGGCPVI 350 (461)
Q Consensus 275 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e----~~l~e~~~~~~p~~ 350 (461)
+..++++++... ...+.+|++++|.+|++++++.+.+. .++.++....+ .++.+.... .++|
T Consensus 159 ~~~~~~~~~~~~---------~~~~~~~~r~~~~e~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~f 224 (335)
T d1b8aa2 159 NAKELDILNFEL---------EEPKLPFPRVSYDKALEILGDLGKEI----PWGEDIDTEGERLLGKYMMENENA-PLYF 224 (335)
T ss_dssp CHHHHHHTTCCC---------CCCCSSCCEEEHHHHHHHHHHTTCCC----CTTSCCCHHHHHHHHHHHHHHHCC-SEEE
T ss_pred ccchhhhhcccc---------ccCCCCcccccHHHHHHHHHhhcccc----Ccccccccccccceeeeeeccccc-ccce
Confidence 665555443211 12456899999999999999877543 45566655443 334443333 5789
Q ss_pred eeeCCccCCccccccCCC-ccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccc
Q 012529 351 VSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGF 429 (461)
Q Consensus 351 i~~~P~~~~pf~~~~~~~-~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~ 429 (461)
|+|||.+++|||+..+++ +..+++||||++|+ ||+||++|++++++|.+++++.|++++.++|||+|++||+||||||
T Consensus 225 i~~~P~~~~pl~~~~~~~~~~~a~rfel~~~G~-El~nG~~e~~~~~~~~~r~~~~~~~~e~~e~yl~al~~G~Pp~~G~ 303 (335)
T d1b8aa2 225 LYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGV-EISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGF 303 (335)
T ss_dssp EESCBGGGSCTTBCEETTEEEEESEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSBCCCCEEEE
T ss_pred eecChHHhhhccccccCCCcHHHHhhccccCce-eeecccchhcCHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCcee
Confidence 999999999999776544 35778999999996 9999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHcCCCCccccccCCCCCCCCC
Q 012529 430 GLGFERLVQFATGVENIRDAIPFPRTPGSVE 460 (461)
Q Consensus 430 giGidRLvm~l~g~~~Irdv~~FPr~~~~~~ 460 (461)
|||||||+|++||.+|||||++|||+++||.
T Consensus 304 glGiDRLvm~l~~~~~IrdVi~FPr~~~~~~ 334 (335)
T d1b8aa2 304 GLGAERLIKQMLDLPNIREVILFPRDRRRLT 334 (335)
T ss_dssp EEEHHHHHHHHTTCSCGGGGSSSCCBTTBCC
T ss_pred eeHHHHHHHHHhCCCcHHheEcCCCCCCCCC
Confidence 9999999999999999999999999999984
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=100.00 E-value=7.2e-71 Score=553.66 Aligned_cols=308 Identities=20% Similarity=0.295 Sum_probs=242.3
Q ss_pred hhhhcCccccC-CCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeee--cCCCcccccCCccc
Q 012529 129 EFLRTKAHLRP-RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTT--LIPSSREAAESPVD 205 (461)
Q Consensus 129 ~~~r~~r~l~~-R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~--~~~~~~~~~~s~~~ 205 (461)
++..+|||||+ |++.++++|++||++++++|+||.++||+||+||+|++++|||++++|.+.. ++. ..+|++||.+
T Consensus 3 ~~Rl~~R~lDl~r~~~~~~~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~~~~~~~~f~~~~~~~~~-~~yL~~Spql 81 (342)
T d1e1oa2 3 EVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDL-DMYLRIAPEL 81 (342)
T ss_dssp THHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTE-EEEECSCSHH
T ss_pred HhhhhcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCccccCCCCCCcceeecccCCCc-ccccchhhHH
Confidence 34458999998 8889999999999999999999999999999999999999999999998754 332 4678888765
Q ss_pred cCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhcccccc
Q 012529 206 AIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTW 285 (461)
Q Consensus 206 ~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~ 285 (461)
.++++. .++++||||||||||||++ ++||+||||||||||+|+|++|+|+++|+++++++..+.+.+........
T Consensus 82 ~~k~~l--~~g~~~vf~i~p~FR~E~~-~~rHl~EFtmlE~e~a~~~~~d~m~~~e~l~~~i~~~~~~~~~~~~~~~~-- 156 (342)
T d1e1oa2 82 YLKRLV--VGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHV-- 156 (342)
T ss_dssp HHHHHH--HHTCCEEEEEEEEECCCCC-CC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEE--
T ss_pred HHHHHh--hhcccceeeeccccccccc-cccchHHHHHHHHHHHhhhhhhHHHhhhHHHHHHHHHHhCcchhhccchh--
Confidence 543332 2369999999999999988 57999999999999999999999999999999999999877643221110
Q ss_pred ccchhhhhhhhhhcCCCccccHHHHHHHH-------------------HHhcccccccccccc-cCChHhhhchhhhccc
Q 012529 286 IEKGIIDRLSTVAERDFVQLSYTDAIELL-------------------IKAKKKFEFLVKWGC-DLQSEHERYLTEEAFG 345 (461)
Q Consensus 286 ~~~~~~~~l~~~~~~~~~~it~~ea~~~l-------------------~~~~~~~~~~~~~g~-~l~~~~e~~l~e~~~~ 345 (461)
.....+++++++.+|++.+ +..+...+. .||. ++..+.+..+.+.+++
T Consensus 157 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 224 (342)
T d1e1oa2 157 ----------FDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEK--SWGLGRIVTEIFDEVAEAHLI 224 (342)
T ss_dssp ----------EETTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCT--TCCHHHHHHHHHHHHTGGGCC
T ss_pred ----------cccCCchhhhhHHHHHHHHhccccHhhhhhhHHHHHHHHHcCCCccc--ccchhHHHHHHHHHhhHhhcc
Confidence 0122344445554444322 222333222 3432 1223334445555665
Q ss_pred CCCeeeeeCCccCCccccccCCCccceeccccccCCceeeechhhhcccHHHHHHHHHH------cCCCccc--HHHHHH
Q 012529 346 GCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDS--YWWYLD 417 (461)
Q Consensus 346 ~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~------~~~~~~~--~~~yl~ 417 (461)
.|+||+|||.+++|||++.++++..+++|||+++| +||+|||+|+|+++.+.+++++ .+.++.. .+|||+
T Consensus 225 -~p~fi~~~P~~~~~f~~~~~~~~~~~~~fdl~~~g-~El~~G~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~~d~~yl~ 302 (342)
T d1e1oa2 225 -QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG-REIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVT 302 (342)
T ss_dssp -SCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETT-EEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHH
T ss_pred -CCCcCCCCccccChhhccccccchhhhhhhcccCC-EeecCCccccCCHHHHHHHHHHHHHHHhcCcchhhhhhHHHHH
Confidence 89999999999999998877777889999999999 5999999999999999988753 2333322 389999
Q ss_pred HhccCCCCCccccccHHHHHHHHcCCCCccccccCCCCC
Q 012529 418 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 456 (461)
Q Consensus 418 a~~~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~ 456 (461)
|++||+|||||||||+|||+|++||.+|||||++|||+.
T Consensus 303 a~~~G~pPh~G~glG~dRlvm~l~g~~nIrdvi~FPr~r 341 (342)
T d1e1oa2 303 ALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMR 341 (342)
T ss_dssp HHHHHCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCCCC
T ss_pred HhhCCCCCccchhHHHHHHHHHHhCCCcHHHhccCCCCC
Confidence 999999999999999999999999999999999999964
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=100.00 E-value=4.1e-70 Score=539.69 Aligned_cols=299 Identities=27% Similarity=0.401 Sum_probs=221.5
Q ss_pred CccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCCCcccc
Q 012529 134 KAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (461)
Q Consensus 134 ~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~~~~~~ 213 (461)
|||||+|++.++++|++||+|++++|+||.++||+||+||+|++++++|++++|.+++++. ..++++||++. +++..
T Consensus 1 yR~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~e~~~~~f~~~~~~~-~~~L~~Spel~-k~ll~- 77 (304)
T d1n9wa2 1 YRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEK-RAYLAQSPQLY-KQIMV- 77 (304)
T ss_dssp CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC-----------------------------CHHH-HHHHH-
T ss_pred CCeEEecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCCCCCceECCccccc-chhccccHHHH-HHHhh-
Confidence 6999999999999999999999999999999999999999999999999999999988876 46788888764 44333
Q ss_pred CcCcceeEEEecccccCCCCCCCCccccccceeeeccC-CHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhhh
Q 012529 214 LIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGIID 292 (461)
Q Consensus 214 ~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~-d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 292 (461)
+++++|||||||||||++.++||+|||||||||++|. +++++|+++|++++.++..+.+.+...+..++...
T Consensus 78 -~g~~~if~i~~~FR~ee~~~~rh~~EF~~le~~~~~~~~~~~~~~l~E~l~~~~~~~~~~~~~~~~~~~~~~~------ 150 (304)
T d1n9wa2 78 -GVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATW------ 150 (304)
T ss_dssp -HHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCC------
T ss_pred -cccccceeehhhcccccccccccccHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccce------
Confidence 3589999999999999988889999999999999986 68999999999999999999888766665443211
Q ss_pred hhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchh----hhcccCCCeeeeeCCccCCccccccCCC
Q 012529 293 RLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT----EEAFGGCPVIVSDYPKEIKAFYMRQNDD 368 (461)
Q Consensus 293 ~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~----e~~~~~~p~~i~~~P~~~~pf~~~~~~~ 368 (461)
.....+++++++.||+++++..- ...++.++....++.+. ++... .|+||+|||.+++|||+...+
T Consensus 151 ---~~~~~~~~~~~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~fi~~~P~~~~p~~~~~~~- 220 (304)
T d1n9wa2 151 ---PSFPQDIPRLTHAEAKRILKEEL-----GYPVGQDLSEEAERLLGEYAKERWGS-DWLFVTRYPRSVRPFYTYPEE- 220 (304)
T ss_dssp ---CCCSSSCCEEEHHHHHHHHHHTS-----CCCCCSSCCHHHHHHHHHHHHHHTCC-SEEEEECCBGGGSCTTBCBCT-
T ss_pred ---ecccchhhhhhHHHHHHHHHHHh-----CCCcCCCccHHHHHHHHHHHHhhcCC-ceEEEeCChhhhCchhhcccc-
Confidence 12345778899999999887641 12456667766666554 33344 799999999999999976544
Q ss_pred ccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccCCCCCccccccHHHHHHHHcCCCCccc
Q 012529 369 GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 448 (461)
Q Consensus 369 ~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pP~gG~giGidRLvm~l~g~~~Ird 448 (461)
+++++|||||++|+ ||+||++|++|+++|.++++++|++++.++|||+|++||+|||||||||+|||+|++||.+||||
T Consensus 221 ~~~a~rfel~~~G~-El~nG~~e~~d~~~l~~r~~~~~~~~e~~~~yl~al~~G~PP~~G~glGiDRL~m~l~g~~~Ird 299 (304)
T d1n9wa2 221 DGTTRSFDLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRY 299 (304)
T ss_dssp TSBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGG
T ss_pred cceeehhccccCcE-EEeccccccCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCceeehHHHHHHHHHhCCCcHHh
Confidence 46889999999996 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 012529 449 AIPFP 453 (461)
Q Consensus 449 v~~FP 453 (461)
|++||
T Consensus 300 v~~FP 304 (304)
T d1n9wa2 300 ARAFP 304 (304)
T ss_dssp GCSCC
T ss_pred eecCC
Confidence 99999
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-69 Score=542.74 Aligned_cols=311 Identities=22% Similarity=0.320 Sum_probs=252.0
Q ss_pred CCCCcccCChhhhh-cCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCC-Cc
Q 012529 119 YPIQKKRVSREFLR-TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP-SS 196 (461)
Q Consensus 119 ~Pl~~~~~~~~~~r-~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~-~~ 196 (461)
+|++.+..+.+..| ++||||+|++.++++|++||++++++|+||.++||+||+||+|++++++|++..|..++... ..
T Consensus 2 lP~~~~~~~~~e~Rl~~R~LdLr~~~~~~ilr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~~g~~~~~~~~~~~~~~~ 81 (346)
T d1c0aa3 2 LPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKF 81 (346)
T ss_dssp CSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECSSSTTCE
T ss_pred CCCCCCCCCCHHHHhhchHHhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCccccccccccccCCCcc
Confidence 68876655555555 99999999999999999999999999999999999999999999999999998776544322 23
Q ss_pred ccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCc
Q 012529 197 REAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCK 276 (461)
Q Consensus 197 ~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~ 276 (461)
.+|++||+++++++..+ |++||||||||||||+++ .||+|||||||||++|.|++++|+++|+|+++++..+.+..
T Consensus 82 ~~L~~Spel~lk~ll~~--g~~~Vf~i~~~FR~E~~~-~~H~~EFtmLE~e~a~~~~~~~m~~~E~li~~l~~~~~~~~- 157 (346)
T d1c0aa3 82 YALPQSPQLFKQLLMMS--GFDRYYQIVKCFRDEDLR-ADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVD- 157 (346)
T ss_dssp EECCSCSHHHHHHHHHT--TCCEEEEEEEEECCCCCB-TTBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred ccCCcCHHHHHHHHhhc--CCCceEEEeeeccccccC-chhhhHhhhhccccccccHhHhHHHHHHHHHHHHHHHhCCc-
Confidence 46888988776544433 589999999999999995 57779999999999999999999999999999998876431
Q ss_pred chhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccc----ccccccCChHhhhchhhhcccCCCeeee
Q 012529 277 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL----VKWGCDLQSEHERYLTEEAFGGCPVIVS 352 (461)
Q Consensus 277 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~----~~~g~~l~~~~e~~l~e~~~~~~p~~i~ 352 (461)
-.+|++++|.||+..+......+... ..|+.++....+ ..+.... .+++++
T Consensus 158 ----------------------~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~l~-~~~~~~ 212 (346)
T d1c0aa3 158 ----------------------LGDFPVMTFAEAERRYGSDKPDLRDESKWAPLWVIDFPMFED--DGEGGLT-AMHHPF 212 (346)
T ss_dssp ----------------------CCSCCEEEHHHHHHHHSCSSCCTTCSSCCCEEEEECCBSEEE--CSSSCEE-ESSCTT
T ss_pred ----------------------CCccceeeHHHHHHHhcccccchhhHhhhhhhccccccccch--hccccee-eeEeec
Confidence 13678899999876543221111111 112222211111 1111222 467788
Q ss_pred eCCccCCccccccCCCccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCc----ccHHHHHHHhccCCCCCcc
Q 012529 353 DYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR----DSYWWYLDLRHYGSVPHAG 428 (461)
Q Consensus 353 ~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~----~~~~~yl~a~~~G~pP~gG 428 (461)
++|...+|+++..++++.++++|||+++|+ ||+||++|++++++|++++++.|+++ +.++|||+|++||+|||||
T Consensus 213 ~~p~~~~~~~~~~~~~~~~a~~fdl~~~G~-El~nG~~rl~d~~~~~~r~~~~~~~~~~~~e~~~~ylda~~~G~PP~~G 291 (346)
T d1c0aa3 213 TSPKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAG 291 (346)
T ss_dssp BCBSSCCHHHHHHSCTTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEE
T ss_pred cccchhhHHHhccCCccccccccccCcCCE-EEechhhhhchHHHHHHHHHHhCccccchHHHHHHHHHHHHCCCCCcee
Confidence 899999999988777778899999999995 99999999999999999999999987 5689999999999999999
Q ss_pred ccccHHHHHHHHcCCCCccccccCCCCCCCC
Q 012529 429 FGLGFERLVQFATGVENIRDAIPFPRTPGSV 459 (461)
Q Consensus 429 ~giGidRLvm~l~g~~~Irdv~~FPr~~~~~ 459 (461)
||||+|||+|++||.+|||||++|||++++.
T Consensus 292 ~glGldRL~m~l~g~~~Irdvi~FPRt~~~~ 322 (346)
T d1c0aa3 292 LAFGLDRLTMLLTGTDNIRDVIAFPKTTAAA 322 (346)
T ss_dssp EEEEHHHHHHHHHTCSCGGGGSSSCCCTTSC
T ss_pred EeEHHHHHHHHHcCCCcHHheecCCCCCCCC
Confidence 9999999999999999999999999999754
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=100.00 E-value=2e-69 Score=544.66 Aligned_cols=312 Identities=21% Similarity=0.309 Sum_probs=247.3
Q ss_pred CCCCCcccC-------ChhhhhcCccccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCCCCCCcceeee
Q 012529 118 SYPIQKKRV-------SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVT 190 (461)
Q Consensus 118 ~~Pl~~~~~-------~~~~~r~~r~l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~ 190 (461)
++|++.+.+ +.+...++||||+|++.++++||+||++++++|+||.++||+||+||+|++++|+|++..|.+.
T Consensus 3 ~~p~~~~~~~~~~~~~~~~~Rl~~R~LdLR~~~~~~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~~~ 82 (356)
T d1l0wa3 3 PFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPY 82 (356)
T ss_dssp SSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEEC
T ss_pred CcccCcccccccccccCHHHHhhchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCcccccchhhh
Confidence 588876533 3333339999999999999999999999999999999999999999999999999999877643
Q ss_pred ecC-CCcccccCCccccCCCccccCcCcceeEEEecccccCCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHH
Q 012529 191 TLI-PSSREAAESPVDAIPKTKDGLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVR 269 (461)
Q Consensus 191 ~~~-~~~~~~~~s~~~~l~~~~~~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~ 269 (461)
... ....+|++||++.++.+.. +|++|||+||||||||+++ +||+|||||||||++|.|++++|+++|++++++++
T Consensus 83 ~~~~~~~~yL~~Spel~lk~ll~--~g~~~Vf~i~~~FRaE~~~-t~H~~EFtmLE~e~~~~~~~~~m~~~E~li~~v~~ 159 (356)
T d1l0wa3 83 RHEPGLFYALPQSPQLFKQMLMV--AGLDRYFQIARCFRDEDLR-ADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFR 159 (356)
T ss_dssp TTSTTEEEECCSCSHHHHHHHHH--TTCSEEEEEEEEECCCCCC-SSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred hcccccccCCCcChhHHHHHhhh--cccCcEEEEeccccccccC-CcchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 211 1234688888766554333 3589999999999999996 58999999999999999999999999999999998
Q ss_pred HHHhcCcchhccccccccchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccc---cccccccCCh--Hhhhchhhhcc
Q 012529 270 YILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF---LVKWGCDLQS--EHERYLTEEAF 344 (461)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~---~~~~g~~l~~--~~e~~l~e~~~ 344 (461)
.+.+.. ...+|++++|.+|+..+......+.. ...|+.++.. ..+...... .
T Consensus 160 ~~~~~~----------------------~~~~f~r~~~~~a~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~-~ 216 (356)
T d1l0wa3 160 EALGVE----------------------LPLPFPRLSYEEAMERYGSDKPDLRREGFRFLWVVDFPLLEWDEEEEAWT-Y 216 (356)
T ss_dssp HHTCCC----------------------CCSSCCEEEHHHHHHHHSSSSCCCSCCSCCEEEEECCBSBCCCTTTSCCC-B
T ss_pred HHhCCC----------------------CCCCCCcchHHhhHHHHhcCcHhHHHHhhhhhhccccccccccchhccee-e
Confidence 875432 23578999999998775432211110 1223333221 111110111 2
Q ss_pred cCCCeeeeeCCccCCccccccCCCccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcc----cHHHHHHHhc
Q 012529 345 GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRH 420 (461)
Q Consensus 345 ~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~----~~~~yl~a~~ 420 (461)
. .++|+++||....++++ +++...+++||||++|+ ||+|||+|++|++.|.+++++++++++ .++|||+|++
T Consensus 217 ~-~~~f~~~~p~~~~~~~~--~~~~~~a~~FdL~~~G~-ElanG~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~yl~a~~ 292 (356)
T d1l0wa3 217 M-HHPFTSPHPEDLPLLEK--DPGRVRALAYDLVLNGV-EVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALE 292 (356)
T ss_dssp S-SCTTBCBCSTTTTHHHH--CGGGCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTT
T ss_pred e-eCCcccCChhhhchhhc--CCCcceeeeeecccCCE-EeeccEEEeCcHHHHHHHHHHHcCCchhhHHHHHHHHHHhh
Confidence 2 58899999998776543 33345678999999997 999999999999999999999888764 3689999999
Q ss_pred cCCCCCccccccHHHHHHHHcCCCCccccccCCCCCCCC
Q 012529 421 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 459 (461)
Q Consensus 421 ~G~pP~gG~giGidRLvm~l~g~~~Irdv~~FPr~~~~~ 459 (461)
||+|||||||||+|||+|++||.+|||||++|||+++|+
T Consensus 293 ~G~PP~~G~glGldRLlm~l~g~~~Irdvi~FPR~~~r~ 331 (356)
T d1l0wa3 293 YGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGK 331 (356)
T ss_dssp BTCCCEEEEEEEHHHHHHHHHTCSSGGGGSSSCCCTTSC
T ss_pred CCCCCcceEEEcHHHHHHHHcCCCcHHheecCCCCCCCC
Confidence 999999999999999999999999999999999999986
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.7e-67 Score=512.78 Aligned_cols=277 Identities=23% Similarity=0.379 Sum_probs=233.2
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC----C---CCCcceeeeecCCCcccccCCccccCCC
Q 012529 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----E---GAGEQFCVTTLIPSSREAAESPVDAIPK 209 (461)
Q Consensus 137 l~~R~~~~~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~----e---g~~~~F~v~~~~~~~~~~~~s~~~~l~~ 209 (461)
||+|++.++++|++||.+++++|+||.++||+||+||+|++... + .+..+|.++|++. ..+|++||++.+++
T Consensus 3 l~l~~~~~~~il~~Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~~~~~~~~~~~~~~~-~~yL~~SPel~lk~ 81 (293)
T d1nnha_ 3 VEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGV-KMRLTHSMILHKQL 81 (293)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEEEETTE-EEEECSCSHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCcccccCCCCCCccccCccccccccCCCc-eeecccChhhhHHH
Confidence 68899999999999999999999999999999999999987432 2 3457888888876 57899999877654
Q ss_pred ccccCcCcceeEEEecccccCCC--CCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhcccccccc
Q 012529 210 TKDGLIDWSQVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIE 287 (461)
Q Consensus 210 ~~~~~~~~~rVfeI~~~FR~E~~--~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~ 287 (461)
+.+ +|++||||||||||||++ +|.||||||||||||++|.|++|+|+++|++++++++.+.+.+..++
T Consensus 82 lla--~g~~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d~~d~m~~~e~li~~~~~~~~~~~~~~~-------- 151 (293)
T d1nnha_ 82 AIA--MGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREF-------- 151 (293)
T ss_dssp HHH--TTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSSCC--------
T ss_pred HHH--hccccceeechhhhcCcccCCCCccchhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCccc--------
Confidence 433 368999999999999964 56799999999999999999999999999999999998865433222
Q ss_pred chhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCChHhhhchhhhcccCCCeeeeeCCccCCccccccCC
Q 012529 288 KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND 367 (461)
Q Consensus 288 ~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~e~~~~~~p~~i~~~P~~~~pf~~~~~~ 367 (461)
....+|++++|.||++. +|.|.. ..+ .+. .|+|++||| ++||++.++
T Consensus 152 ---------~~~~~~~~~~~~eal~~-------------~g~d~~------~~~-~~~-~p~~~~~~p---~~f~~~~~~ 198 (293)
T d1nnha_ 152 ---------PKTKRFEVFEYSEVLEE-------------FGSDEK------ASQ-EME-EPFWIINIP---REFYDREVD 198 (293)
T ss_dssp ---------CCCSSCEEEEHHHHHHH-------------TSSHHH------HHH-HCS-SCEEEECCC---CCTTBCEET
T ss_pred ---------ccCCccccccHHhhhcc-------------cCcccc------ccc-ccc-cceeccccc---hhhcccccc
Confidence 12257889999998753 222211 111 123 799999999 468877665
Q ss_pred CccceeccccccCCceeeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHhccC-CCCCccccccHHHHHHHHcCCCCc
Q 012529 368 DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENI 446 (461)
Q Consensus 368 ~~~~~~~fdl~~~G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~~~~~~yl~a~~~G-~pP~gG~giGidRLvm~l~g~~~I 446 (461)
+...+.+|+++++| +||+||++|+||+++|.+++++.|++++.++|||+|++|| ||||||||||+|||+|+++|.+||
T Consensus 199 ~~~~~~~~~l~~~g-~Elang~~el~d~~~~~~r~~~~gl~~e~~~~yl~a~~~G~mPP~~G~glGiDRL~m~l~g~~~I 277 (293)
T d1nnha_ 199 GFWRNYDLILPYGY-GEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHI 277 (293)
T ss_dssp TEECEEEEEETTTT-EEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSG
T ss_pred cccccceeEecccC-cccccccccccCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCeEeehHHHHHHHHhCCCcH
Confidence 55566789999999 5999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred cccccCCCCCCC
Q 012529 447 RDAIPFPRTPGS 458 (461)
Q Consensus 447 rdv~~FPr~~~~ 458 (461)
|||++|||+||-
T Consensus 278 rdv~~FPR~~g~ 289 (293)
T d1nnha_ 278 AEVQPFPRIPGI 289 (293)
T ss_dssp GGGCSSCCCTTS
T ss_pred HheecCCCCCCC
Confidence 999999999984
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=99.87 E-value=6.3e-22 Score=161.79 Aligned_cols=97 Identities=16% Similarity=0.317 Sum_probs=88.5
Q ss_pred ceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc---hhhhhhcCCCCCcEE
Q 012529 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG---YDQVKSGLITTGASI 86 (461)
Q Consensus 10 ~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~---~~~~~~~~l~~g~~V 86 (461)
|+|+|.+|.+. +.|++|+|+|||+++|.+|+++|++|||++|. +|||++++..+ |+.++. |+.||+|
T Consensus 3 RTh~~~el~~~------~~G~~V~v~Gwv~~~R~~g~i~Fi~LrD~sg~--iQ~v~~~~~~~~~~~~~~~~--l~~es~v 72 (103)
T d1b8aa1 3 RTHYSSEITEE------LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPK--LRSEDVV 72 (103)
T ss_dssp CSCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGG--CCTTCEE
T ss_pred cccChhhCChh------HCCCEEEEEEEEehhccCCCcEEEEEEcCCEe--eeEEEeccccchhhhhHHhh--CCcceEE
Confidence 68999999874 78999999999999999999999999999975 99999887532 666788 9999999
Q ss_pred EEEeeEeecCCCCccEEEEEeEEEEeccCC
Q 012529 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSD 116 (461)
Q Consensus 87 ~v~G~~~~~~~~~~~~el~~~~i~vl~~~~ 116 (461)
.|+|++.++|.+++++||++++++|||+|+
T Consensus 73 ~V~G~v~~~~~~~~~iEi~v~~i~ils~a~ 102 (103)
T d1b8aa1 73 AVEGVVNFTPKAKLGFEILPEKIVVLNRAE 102 (103)
T ss_dssp EEEEEEEECTTSTTSEEEEEEEEEEEECBC
T ss_pred EEEEEEEECCCCCccEEEEeeEEEEEEecC
Confidence 999999999988889999999999999986
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=99.85 E-value=5.1e-21 Score=153.51 Aligned_cols=92 Identities=17% Similarity=0.290 Sum_probs=82.5
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEe
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G 90 (461)
++.|+|+.+ +.|++|+|+|||+++|.+|+++|++|||++|. +||++++.. . +..||+|.|+|
T Consensus 2 R~~I~dl~~-------~~g~~V~v~GwV~~~R~~gk~~Fi~LrD~sg~--iQ~v~~~~~-------~--~~~e~~v~v~G 63 (93)
T d1n9wa1 2 RVLVRDLKA-------HVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGGLK-------L--PLPESALRVRG 63 (93)
T ss_dssp BCCGGGGGG-------CTTSEEEEEEEEEEEEECSSEEEEEEEETTEE--EEEEEESCC-------C--CCTTCEEEEEE
T ss_pred cEEhHHhhh-------cCCCEEEEEEEEEeEEeCCCcEEEEEEcCCcc--ceEEecccc-------c--cccceEEEEEE
Confidence 457888853 78999999999999999999999999999975 999998752 4 88999999999
Q ss_pred eEeecCCCCccEEEEEeEEEEeccCCCCCC
Q 012529 91 NVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120 (461)
Q Consensus 91 ~~~~~~~~~~~~el~~~~i~vl~~~~~~~P 120 (461)
++.+++.+++++||+++++++||+|..++|
T Consensus 64 ~v~~~~~~~~~~Ei~v~~i~il~~a~~plP 93 (93)
T d1n9wa1 64 LVVENAKAPGGLEVQAKEVEVLSPALEPTP 93 (93)
T ss_dssp EEEECTTSTTSEEEEEEEEEEEECCCSCCC
T ss_pred EEEECCCCCCCEEEEEeEEEEEecCCCCCC
Confidence 999999888899999999999999986565
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=99.84 E-value=5.8e-21 Score=155.82 Aligned_cols=98 Identities=18% Similarity=0.353 Sum_probs=87.6
Q ss_pred cceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEE
Q 012529 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (461)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v 88 (461)
.|||+|.+|.+. +.|++|+|+|||+++|.+|+++|++|||++|. +||+++.+...|+.++. |+.||+|.|
T Consensus 2 ~RTh~~geL~~~------~~g~~V~l~GWV~~~R~~g~i~Fi~LRD~~G~--iQ~v~~~~~~~~~~~~~--l~~Es~I~V 71 (104)
T d1l0wa1 2 RRTHYAGSLRET------HVGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVRA 71 (104)
T ss_dssp CCSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEE
T ss_pred ccccccccCChH------HCCCEEEEEEEEEehhcCCCeEEEEEECCCCc--eEEecccchhHHHHHhh--cCcccEEEE
Confidence 478999999874 79999999999999999999999999999975 99999988777888888 999999999
Q ss_pred EeeEeecCC-----CCccEEEEEeEEEEeccCC
Q 012529 89 QGNVVPSQG-----SKQKVELKVNKIVLVGKSD 116 (461)
Q Consensus 89 ~G~~~~~~~-----~~~~~el~~~~i~vl~~~~ 116 (461)
+|+|.++|. .++++||++++++|||+|.
T Consensus 72 ~G~V~~r~~~n~~~~tG~iEi~v~~i~iL~~ak 104 (104)
T d1l0wa1 72 KGLVRLRPEPNPRLATGRVEVELSALEVLAEAK 104 (104)
T ss_dssp EEEEEECSSCCTTSTTTTEEEEEEEEEEEECCC
T ss_pred EEEEeeCCccCCCCCCCCEEEEEeEEEEEEcCC
Confidence 999987664 2357999999999999983
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.9e-20 Score=153.59 Aligned_cols=98 Identities=17% Similarity=0.357 Sum_probs=84.9
Q ss_pred cceeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCCCCcEEE
Q 012529 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIW 87 (461)
Q Consensus 9 ~~~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~~g~~V~ 87 (461)
.|+|+|.+|.+. +.|++|+|+|||+++|.+|+++|++|||++|. +||++.++.. .++.++. |+.||+|.
T Consensus 1 mRth~cgeL~~~------~~g~~V~v~GWv~~~R~~g~i~Fi~LRD~~G~--~Q~v~~~~~~~~~~~~~~--l~~Es~v~ 70 (106)
T d1c0aa1 1 MRTEYCGQLRLS------HVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASE--LRNEFCIQ 70 (106)
T ss_dssp CCSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECGGGHHHHHHHTT--CCTTCEEE
T ss_pred CCceEcccCChH------HCCCEEEEEEEEEEeeeCCCcEEEEEEcCCeE--EeEEecccchhHHHHHHh--hCccceEE
Confidence 378999999874 79999999999999999999999999999975 9999987653 3445677 99999999
Q ss_pred EEeeEeecCCC-------CccEEEEEeEEEEeccCC
Q 012529 88 IQGNVVPSQGS-------KQKVELKVNKIVLVGKSD 116 (461)
Q Consensus 88 v~G~~~~~~~~-------~~~~el~~~~i~vl~~~~ 116 (461)
|+|+|.++|.+ ++++||++++++|||+|+
T Consensus 71 V~G~V~~r~~~~~n~~~~tg~iEi~v~~i~vl~~ad 106 (106)
T d1c0aa1 71 VTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD 106 (106)
T ss_dssp EEEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCC
T ss_pred EEeEEeccCccccCCCCCCCcEEEEEeEEEEEeCCC
Confidence 99999887653 246999999999999984
|
| >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=99.77 E-value=4.5e-19 Score=152.91 Aligned_cols=110 Identities=19% Similarity=0.313 Sum_probs=91.8
Q ss_pred CccccceeeeccccCCCcCC----CCCCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCc---chhh-hh
Q 012529 5 VGEFRKKLKIVDVKGGPNEG----LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQ-VK 76 (461)
Q Consensus 5 ~~~~~~~~~i~~i~~~~~~~----~~~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~---~~~~-~~ 76 (461)
.++|.++|+++++.+.++.. ....+..|+|+|||+++|.+||++|++|+|.+| .||++++++.. .|.. .+
T Consensus 26 P~~~~~t~~~~ei~~~~~~~~~~~~~~~~~~V~vaGRI~~~R~~Gk~~F~~i~D~~g--~iQi~~~~~~~~~~~~~~~~k 103 (143)
T d1e1oa1 26 PNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQFK 103 (143)
T ss_dssp CCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSSTTHHHHTGG
T ss_pred CCCCcCCccHHHHHHHHhcccchhhhccCceEEEEEEEEEEcccCCeeEEEEEeCCc--eEEEEEccccchhhhHHHHHh
Confidence 57899999999998765321 112367899999999999999999999999996 59999998753 3544 35
Q ss_pred hcCCCCCcEEEEEeeEeecCCCCccEEEEEeEEEEeccCCCCCC
Q 012529 77 SGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120 (461)
Q Consensus 77 ~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~~~~~P 120 (461)
. |+.||+|.|+|.+.+|+++ +++|.|+++++|+||..++|
T Consensus 104 ~--ld~GDiIgv~G~~~~TktG--Elsi~~~~~~lLsK~l~PLP 143 (143)
T d1e1oa1 104 K--WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKALRPLP 143 (143)
T ss_dssp G--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSSCCC
T ss_pred c--CCcccEEEeecccEECCCC--cEEEEeeEEEEeccccCCCC
Confidence 6 9999999999999999877 79999999999999986555
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=1.2e-17 Score=142.68 Aligned_cols=98 Identities=18% Similarity=0.350 Sum_probs=81.6
Q ss_pred eeeeccccCCCcCCCCCCCCEEEEEEEEeeeecCC-CeEEEEEEcCccCccEEEEEeCCCcc------hhhhhhcCCCCC
Q 012529 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAEG------YDQVKSGLITTG 83 (461)
Q Consensus 11 ~~~i~~i~~~~~~~~~~~~~~v~v~G~v~~~R~~~-~~~Fi~l~D~s~~~~iQvv~~~~~~~------~~~~~~~~l~~g 83 (461)
++.+.++... ++.|++|+|+|||+++|.+| +++|++|||++|. +|+++..+... ++.++. |+.|
T Consensus 23 r~~i~dl~~~-----~~~g~~V~v~GwV~~~R~~G~kl~F~~LrD~sg~--iQ~~v~~~~~~~~~~~~~~~~~~--l~~e 93 (134)
T d1eova1 23 RVKFVDLDEA-----KDSDKEVLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKANKEGTISKNMVKWAGS--LNLE 93 (134)
T ss_dssp CCCGGGCCTT-----TTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEE--EEEEEECCSSSSSCHHHHHHHTT--CCTT
T ss_pred EEEeccccch-----hcCCCEEEEEEEEEEEEeCCCcEEEEEEEcCCCc--EEEEEEeccccchhHHHHHHHhc--CCCC
Confidence 4556666543 57899999999999999997 6999999999974 99999876421 344667 9999
Q ss_pred cEEEEEeeEeecCCC-----CccEEEEEeEEEEeccCCC
Q 012529 84 ASIWIQGNVVPSQGS-----KQKVELKVNKIVLVGKSDP 117 (461)
Q Consensus 84 ~~V~v~G~~~~~~~~-----~~~~el~~~~i~vl~~~~~ 117 (461)
|+|.|+|+|.+++.. ++++||++++++|||+|..
T Consensus 94 s~V~V~G~v~~~~~~~~~~~~~~~Ei~v~~i~vls~a~~ 132 (134)
T d1eova1 94 SIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPE 132 (134)
T ss_dssp CEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCS
T ss_pred CEEEEEEEEEeCCccCCCCCCCcEEEEEEEEEEEeCCCC
Confidence 999999999998753 5789999999999999974
|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS species: Thermus thermophilus [TaxId: 274]
Probab=99.19 E-value=1.4e-11 Score=115.29 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=36.0
Q ss_pred eeEEEecccccCCCCCCCCccccccceeeeccC--CHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQY 266 (461)
Q Consensus 219 rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~--d~~dlm~~~e~li~~ 266 (461)
|++.+|+|||+|.. +++|.|+|.|+|.-.... ++.+++..++++++.
T Consensus 111 ~~~~~g~VyRrd~i-D~tH~p~FhQ~eg~~vd~~~~~~~Lk~~l~~~~~~ 159 (266)
T d1jjca_ 111 RIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQA 159 (266)
T ss_dssp EEEEEEEEECCSCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred eEEecccceecCCC-CCcccccceeeeeeeccccccHHHHHHHHHHHHHH
Confidence 79999999999998 589999999999765432 466666555555544
|
| >d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Asparagine synthetase species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=2.9e-10 Score=105.52 Aligned_cols=271 Identities=18% Similarity=0.142 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHhhh-----CCcEEEecceeecCCCC------CCCcc--eeeeecCCCcccccCCcccc----CCCccc
Q 012529 150 VRNALAYATHKFFQE-----NGFIWISSPIITASDCE------GAGEQ--FCVTTLIPSSREAAESPVDA----IPKTKD 212 (461)
Q Consensus 150 ~Rs~i~~~iR~ff~~-----~gF~EV~TPiL~~~~~e------g~~~~--F~v~~~~~~~~~~~~s~~~~----l~~~~~ 212 (461)
...+.|..++++|.. .+.++|..|+++....+ |.-+| |.+...+....+...|...| |+++.-
T Consensus 4 ~tq~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpV~F~ik~~~~~~~EiVhSLAKWKR~aL~~y~f 83 (327)
T d12asa_ 4 AKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDF 83 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcEEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCCeeEEEeehHHHHHHHHHhcCC
Confidence 345667777777754 69999999999986553 11223 22221111111222343332 111100
Q ss_pred cCcCcceeEEEeccccc-CCCCCCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHHhcCcchhccccccccchhh
Q 012529 213 GLIDWSQVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYILDNCKEDMDFFNTWIEKGII 291 (461)
Q Consensus 213 ~~~~~~rVfeI~~~FR~-E~~~t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~ 291 (461)
..-+-+|+=..+.|. |+.-+..|.--.-|.|||.....-+.-++.+.+.++.+++.+......-...++
T Consensus 84 --~~geGlytdMnAiR~DEd~ldn~HSiyVDQWDWEkvI~~~dR~l~~Lk~tV~~Iy~~ik~te~~v~~~y~-------- 153 (327)
T d12asa_ 84 --SAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFG-------- 153 (327)
T ss_dssp --CTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHSC--------
T ss_pred --CCCceeccCCccccCCcccCCCceeEEEcccchhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------
Confidence 012348988888885 663368999999999999987766666777777777777766543211000010
Q ss_pred hhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccCC-hHhhhchhhhcccCCCeeeeeCCccCC---ccccccCC
Q 012529 292 DRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAFGGCPVIVSDYPKEIK---AFYMRQND 367 (461)
Q Consensus 292 ~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~-~~~e~~l~e~~~~~~p~~i~~~P~~~~---pf~~~~~~ 367 (461)
+...+. ..|++-.+.+++... . +|+ .+.|..+++++ ..|||+.--..++ |--.+..+
T Consensus 154 --~~~~Lp---~~I~FitsqeL~~~Y----------P-~Lt~keRE~~i~ke~---gAVFi~~IG~~L~~G~~Hd~RApD 214 (327)
T d12asa_ 154 --LAPFLP---DQIHFVHSQELLSRY----------P-DLDAKGRERAIAKDL---GAVFLVGIGGKLSDGHRHDVRAPD 214 (327)
T ss_dssp --CCCCSC---SSCEEEEHHHHHHHS----------S-SSCHHHHHHHHHHHH---SEEEEECCSSCCSSSCCSSCCCTT
T ss_pred --cccCCC---CceEEEehHHHHHHC----------C-CCChHHHHHHHHHHh---CcEEEEecCCcCCCCCcCCCCCCC
Confidence 011111 223332233333321 1 222 34566666655 3678776544332 22222222
Q ss_pred Cccce---------eccccccC------CceeeechhhhcccHHHHHHHHHHcCCCc-ccHHHHHHHhccCCCCCccccc
Q 012529 368 DGRTV---------AAMDMLVP------RIGELIGGSQREERLEYLEGRLDELKLNR-DSYWWYLDLRHYGSVPHAGFGL 431 (461)
Q Consensus 368 ~~~~~---------~~fdl~~~------G~~Ei~~g~~r~~~~~~~~~~~~~~~~~~-~~~~~yl~a~~~G~pP~gG~gi 431 (461)
.+.+. ..=|+++- .+ ||.+.+.|. |.+.|.++++..|-+. ..+.|.-..+.--+|-|-|.||
T Consensus 215 YDDW~t~~~~~~~gLNGDIlvw~~vl~~a~-ElSSMGIRV-d~~~L~~QL~~~~~~~r~~l~~Hk~ll~~~LP~TIGGGI 292 (327)
T d12asa_ 215 YDDWSTPSELGHAGLNGDILVWNPVLEDAF-ELSSMGIRV-DADTLKHQLALTGDEDRLELEWHQALLRGEMPQTIGGGI 292 (327)
T ss_dssp TBCCSSBCTTSSBCSEEEEEEEETTTTEEE-EEEEEEEBC-CHHHHHHHHHHHTCTTGGGSHHHHHHHTTCSCCEEEEEE
T ss_pred CCcccCcccccccCccceEEEechhcCcee-eeecceeEE-CHHHHHHHHHHcCChhhhcCHHHHHHHcCCCCccccccc
Confidence 22233 23344332 46 999999999 5588999998776543 3445444444544899999999
Q ss_pred cHHHHHHHHcCCCCcccccc
Q 012529 432 GFERLVQFATGVENIRDAIP 451 (461)
Q Consensus 432 GidRLvm~l~g~~~Irdv~~ 451 (461)
|-.||+|+|++..+|-+|.+
T Consensus 293 GQSRlcM~lL~KaHIGEVQa 312 (327)
T d12asa_ 293 GQSRLTMLLLQLPHIGQVQA 312 (327)
T ss_dssp EHHHHHHHHHTCSCGGGTSC
T ss_pred cHHHHHHHHHccCcccceee
Confidence 99999999999999999976
|
| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=98.39 E-value=1.2e-07 Score=91.50 Aligned_cols=104 Identities=17% Similarity=0.222 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CCCC----CcceeeeecCCCcccccCCccccCCCc-----
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGA----GEQFCVTTLIPSSREAAESPVDAIPKT----- 210 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~----~~~F~v~~~~~~~~~~~~s~~~~l~~~----- 210 (461)
.-.+.|..+.+.+++.|..+||-+|.||++...+ ++.. ...|.+.. .....+...+-...+..
T Consensus 14 ~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d--~~~~~~~lr~d~t~~~~r~~~~ 91 (325)
T d1qe0a2 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKD--KGDRSITLRPEGTAAVVRSYIE 91 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECH--HHHCCEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeCcccccHHHhccccCCchhHHHHHHhhhhc--cccccccccccccccHHHHHHh
Confidence 4567889999999999999999999999997532 1111 12332211 10011111111100000
Q ss_pred --cccCc-CcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 211 --KDGLI-DWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 211 --~~~~~-~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
.+... .--|+|.+|+|||.+.....|. -||+|+.+|.-..+
T Consensus 92 ~~~~~~~~~p~R~~Y~g~VfR~~~~~~~~~-rE~~Q~G~EiiG~~ 135 (325)
T d1qe0a2 92 HKMQGNPNQPIKLYYNGPMFRYERKQKGRY-RQFNQFGVEAIGAE 135 (325)
T ss_dssp TTGGGCSSCSEEEEEEEEEECC-------C-CEEEEEEEEEESCC
T ss_pred hccccccccchhhheecceeeeccccCCcc-ceeeecceeecCCc
Confidence 00000 1138999999999998755555 69999999987664
|
| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=1.9e-06 Score=82.59 Aligned_cols=104 Identities=15% Similarity=0.227 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CCCC----CcceeeeecCCCcccccCCccccCC--Ccc-c
Q 012529 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGA----GEQFCVTTLIPSSREAAESPVDAIP--KTK-D 212 (461)
Q Consensus 146 ~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg~----~~~F~v~~~~~~~~~~~~s~~~~l~--~~~-~ 212 (461)
.-.+.|..+...+++.|..+||.+|.||++...+ ++.. ...+..+... ...+...|....+ +.. +
T Consensus 14 ~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~~~~~~d~~--g~~l~Lr~D~T~~iaR~~~~ 91 (322)
T d1kmma2 14 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRN--GDSLTLRPEGTAGCVRAGIE 91 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCTTSHHHHHTCEEEECTT--SCEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEeECcccccHHHhhcccCcchhhhHHHHhhhhhcc--cccccccccccchhhHHHHh
Confidence 3566778899999999999999999999997533 1111 1223222211 1112111111000 000 0
Q ss_pred -c--CcCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 213 -G--LIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 213 -~--~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
. ...--|+|++|+|||.|.....|. -||+|+.+|.-..+
T Consensus 92 ~~~~~~~p~r~~y~g~v~r~~~~~~gr~-re~~Q~g~EiiG~~ 133 (322)
T d1kmma2 92 HGLLYNQEQRLWYIGPMFRHERPQKGRY-RQFHQLGCEVFGLQ 133 (322)
T ss_dssp TTCSTTCCEEEEEEEEEECCCCCBTTBC-SEEEEEEEEEESCC
T ss_pred hhhhhhhhhhHhhcccccccCCCCCCcc-chhhhhhHHHhccc
Confidence 0 011247999999999998755555 69999999987664
|
| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.06 E-value=1.5e-05 Score=76.36 Aligned_cols=105 Identities=19% Similarity=0.299 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CCC----CCcceeeeecCCCcccccCCccccCCC---cc
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEG----AGEQFCVTTLIPSSREAAESPVDAIPK---TK 211 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg----~~~~F~v~~~~~~~~~~~~s~~~~l~~---~~ 211 (461)
..-.+.|..+...+++.|..+||.||.||++...+ ++. ....|.+...+ ...+...|....+. ..
T Consensus 13 p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~~--g~~l~LRpD~T~~iar~~~ 90 (324)
T d1h4vb2 13 GKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRG--GRSLTLRPEGTAAMVRAYL 90 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC------CCSCEEECTT--SCEEEECCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCccccHHHhhcccCCchhHHHHHHhhhhccC--CcccccccccccHHHHHHH
Confidence 45678888999999999999999999999996432 111 12334332211 11222222111110 00
Q ss_pred -ccCc---CcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 212 -DGLI---DWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 212 -~~~~---~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
.... .--|.|.+|+|||.+.....| .-||+|+.+|.-..+
T Consensus 91 ~~~~~~~~~p~r~~Y~g~VfR~~~~~~gr-~re~~Q~g~EiiG~~ 134 (324)
T d1h4vb2 91 EHGMKVWPQPVRLWMAGPMFRAERPQKGR-YRQFHQVNYEALGSE 134 (324)
T ss_dssp HTTGGGSSSSEEEEEEEEEECCCCC-----CCEEEEEEEEEESCC
T ss_pred HhhhhhhchhhhheeeCcccccCcccCCC-cceeccccccccCCC
Confidence 0000 124899999999999875444 479999999987654
|
| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Lactococcus lactis [TaxId: 1358]
Probab=97.94 E-value=1.3e-05 Score=76.42 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CCC----CCcceeeeecCCCcccccCCccccCC--Cc-cc-
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASD------CEG----AGEQFCVTTLIPSSREAAESPVDAIP--KT-KD- 212 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg----~~~~F~v~~~~~~~~~~~~s~~~~l~--~~-~~- 212 (461)
-++.+..+...+++.|..+||.||.||++...+ +.+ ..+.|.+... ....+...|...++ +. .+
T Consensus 14 ~~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~d~--~g~~l~LRpD~T~~iaR~~~~~ 91 (318)
T d1z7ma1 14 QVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKH--EGQSITLRYDFTLPLVRLYSQI 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECT--TCCEEEECCCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHhhccCCCcccccccceeEeecC--CccEEEeeccccchHHHHHHHh
Confidence 466777899999999999999999999995422 111 1245554322 22223322221111 00 00
Q ss_pred cCcCcceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 213 GLIDWSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 213 ~~~~~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
......|+|++|+|||+|... .-+..||+|+.+|.-..+
T Consensus 92 ~~~~~~r~~Y~g~vfR~~~~~-~~r~rE~~Q~g~EiiG~~ 130 (318)
T d1z7ma1 92 KDSTSARYSYFGKIFRKEKRH-KGRSTENYQIGIELFGES 130 (318)
T ss_dssp CSCCCEEEEEEEECCCCCC--------CCEEEEEEEESSC
T ss_pred cccCCcccccccceeEEcccc-ccccchhhhhheeccccc
Confidence 111346899999999999774 334579999999987665
|
| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.71 E-value=1.6e-05 Score=75.13 Aligned_cols=119 Identities=12% Similarity=0.100 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CC-------CCcceeeeecCCC-cccccCCcccc---CCC-cccc
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-EG-------AGEQFCVTTLIPS-SREAAESPVDA---IPK-TKDG 213 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg-------~~~~F~v~~~~~~-~~~~~~s~~~~---l~~-~~~~ 213 (461)
-.+++.++++.+|+.+.+.||.||.||.|.+... ++ ..+.|.+...... ...+....+.. +.. ....
T Consensus 29 G~~l~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~~~~~~~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~~~s 108 (291)
T d1nyra4 29 GATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHS 108 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCCB
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECccccchhHhhhhccccccccceEEEeeccccccccccccchhHHHHhhhcEecc
Confidence 4678889999999999999999999999998643 11 2344544322111 11111110000 000 0000
Q ss_pred CcCc-ceeEEEecccccCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHHH
Q 012529 214 LIDW-SQVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQYV 267 (461)
Q Consensus 214 ~~~~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~i 267 (461)
.-.+ -|+|++++|||+|.+. ..| .-||+|.|.+. |+..++..+.+++++..+
T Consensus 109 y~dLPlr~~~~~~~fR~E~~~-~~~Gl~Rvr~F~~~d~~~-f~~~eq~~~e~~~~~~~~ 165 (291)
T d1nyra4 109 YRELPIRIAELGTMHRYEASG-AVSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVNMI 165 (291)
T ss_dssp GGGCCEEEEEEEEEECCCCTT-TCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred ccccceEEeeccceeecCCCc-ccccccceeeeeeeehee-ecCCcccHHHHHHHHHHH
Confidence 0012 2799999999999762 221 34999999986 677677777676666554
|
| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=3.5e-05 Score=72.61 Aligned_cols=123 Identities=13% Similarity=0.100 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-C--C-----CCcceeeeecCCCcccccCCcccc---CCCc-cccC
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-E--G-----AGEQFCVTTLIPSSREAAESPVDA---IPKT-KDGL 214 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-e--g-----~~~~F~v~~~~~~~~~~~~s~~~~---l~~~-~~~~ 214 (461)
=.+++.+|.+.+|+-+.+.||.||.||.|.+... + | ..+.|.++..+. ...+....+.. +.+. +.+.
T Consensus 29 G~~l~~~L~~~i~e~~~~~G~~eV~~P~L~~~~l~~~sG~~~~~~~~~~~~~~~~~-~~~L~Pt~e~~~~~~~~~~~~sy 107 (291)
T d1qf6a4 29 GWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENR-EYCIKPMNCPGHVQIFNQGLKSY 107 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEETTE-EEEECSSSHHHHHHHHTTSCEEG
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEcccccchhHHhhhchhhhccchhccccccch-hhcccccCcHHHHHHHHccccch
Confidence 4677899999999999999999999999998532 1 1 124454432221 11111110000 0000 0000
Q ss_pred cCc-ceeEEEecccccCCCC---CCCCccccccceeeeccCCHHHHHHHHHHHHHHHHHHHH
Q 012529 215 IDW-SQVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDMACATAYLQYVVRYIL 272 (461)
Q Consensus 215 ~~~-~rVfeI~~~FR~E~~~---t~rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~~~~ 272 (461)
..+ -|+||+++|||+|.+- +-.=.-||+|-|.+. |+.-++.++.++++++.+. .+.
T Consensus 108 ~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~-f~~~e~~~~e~~~~~~~~~-~i~ 167 (291)
T d1qf6a4 108 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRLVY-DMY 167 (291)
T ss_dssp GGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHH-HHH
T ss_pred hhcCeeEeecceeeecccccccccccccccceecccee-EecchhhHHHHHHHHHHHH-HHH
Confidence 011 3799999999999541 111246999999998 7766777777777765444 344
|
| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.47 E-value=0.00014 Score=69.39 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC------CCC-CCcceeeeecCCCcccccCCccccCC--Cccc--c
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEG-AGEQFCVTTLIPSSREAAESPVDAIP--KTKD--G 213 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~------~eg-~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~--~ 213 (461)
.+-...+..+...+++.|.++||.+|.||++...+ ++. ..+.|.+...+ ...+...|...++ +..+ .
T Consensus 15 p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~f~D~~--g~~l~LRpD~T~~iar~~~~~~ 92 (327)
T d1wu7a2 15 PEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKG--GREVTLIPEATPSTVRMVTSRK 92 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTT--SCEEEECSCSHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeECCccchHhhccccCchhHHHHHhhhhccc--chhhcccccccchhhhHhhhhh
Confidence 44677788999999999999999999999886532 221 23456543222 2222222221111 0000 1
Q ss_pred CcC-cceeEEEecccccCCCCCCCCccccccceeeeccCC
Q 012529 214 LID-WSQVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 252 (461)
Q Consensus 214 ~~~-~~rVfeI~~~FR~E~~~t~rHl~EFtmlE~e~a~~d 252 (461)
... --|+|++|+|||.+... .-+.-||+|+.+|.-..+
T Consensus 93 ~~~~p~k~~y~g~VfR~~~~~-~g~~re~~Q~G~EiiG~~ 131 (327)
T d1wu7a2 93 DLQRPLRWYSFPKVWRYEEPQ-AGRYREHYQFNADIFGSD 131 (327)
T ss_dssp TCCSSEEEEECCEEECCCCSC-SSCCSEEEEEEEEEESCC
T ss_pred hccccceeeccCcceeccccc-cCCcchhhhhhhhhcCCc
Confidence 111 24899999999999874 444569999999987765
|
| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.28 E-value=0.00076 Score=62.07 Aligned_cols=122 Identities=15% Similarity=0.073 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCC-CCCC--------CcceeeeecCCCc----ccccCCccccC---C
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASD-CEGA--------GEQFCVTTLIPSS----REAAESPVDAI---P 208 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-~eg~--------~~~F~v~~~~~~~----~~~~~s~~~~l---~ 208 (461)
-.=.+++.+|.+.+++.+.+.||.||.||+|.... ..+. .+.|.+...+... ..+....+..+ .
T Consensus 37 P~G~~l~~~l~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sg~~~~~~~~~m~~~~~~~~~~~~~~~~L~pt~e~~~~~~~ 116 (272)
T d1hc7a2 37 PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMW 116 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCeEEeeccccchHHhhhcccchhhcccceeeeeccccccccchhhcccccccceeehh
Confidence 33578899999999999999999999999887644 2221 1334443322110 11111100000 0
Q ss_pred Cc-cccCcCc-ceeEEEecccccCCCCCC-CCccccccceeeeccCCHHHHHHHHHHHHHH
Q 012529 209 KT-KDGLIDW-SQVYTFGPTFRAENSNTS-RHLAEFWMIEPELAFADLKDDMACATAYLQY 266 (461)
Q Consensus 209 ~~-~~~~~~~-~rVfeI~~~FR~E~~~t~-rHl~EFtmlE~e~a~~d~~dlm~~~e~li~~ 266 (461)
.. ....-.+ -|+|++++|||+|.+-.. .=.-+|+|.|.+....+.++.....++.+..
T Consensus 117 ~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (272)
T d1hc7a2 117 SKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSI 177 (272)
T ss_dssp HHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred hceeccccccceeeeecccccccccccccccceEEEEEEhhhhhhcccccchhHHHHHHHH
Confidence 00 0000011 379999999999965221 0124889999998777777766666555443
|
| >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.11 E-value=0.00041 Score=66.29 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHh--hhCCcEEEecceeecCCC-CCCC--cceee----------------------eecCCCcccc
Q 012529 147 VARVRNALAYATHKFF--QENGFIWISSPIITASDC-EGAG--EQFCV----------------------TTLIPSSREA 199 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff--~~~gF~EV~TPiL~~~~~-eg~~--~~F~v----------------------~~~~~~~~~~ 199 (461)
=.++|..|.+.+|+.| .+.|+.||.||+|++..- +..+ +.|.= +.......
T Consensus 38 G~~l~~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~d~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 115 (331)
T d1b76a2 38 GVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQDLRGPRGG-- 115 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCEEEECBSSSCBCCCCCEEEECCEEEECSSSCC--
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEeccccCChHHhccCccccccCCceeeecccccccCccchhhccccccccccc--
Confidence 5678899999999987 478999999999988431 1111 11110 00000000
Q ss_pred cCCccccCCCccccC------------cCc-ceeEEEecccccCCCCCCCC---ccccccceeeeccCCHHHHHHHHHHH
Q 012529 200 AESPVDAIPKTKDGL------------IDW-SQVYTFGPTFRAENSNTSRH---LAEFWMIEPELAFADLKDDMACATAY 263 (461)
Q Consensus 200 ~~s~~~~l~~~~~~~------------~~~-~rVfeI~~~FR~E~~~t~rH---l~EFtmlE~e~a~~d~~dlm~~~e~l 263 (461)
.....+-++-+.++. -.+ =+++|||.|||+|-+ .... .=||||.|+|. |++-++..+.....
T Consensus 116 ~~~~~~lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s-~~~gl~RvReFtq~D~~~-F~~~~q~~~~~~~~ 193 (331)
T d1b76a2 116 RGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT-PRNFIFRVREFEQMEIEY-FVRPGEDEYWHRYW 193 (331)
T ss_dssp GGGEEEECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSS-CCTTTTSCSEEEEEEEEE-EECGGGHHHHHHHH
T ss_pred cCCcccccCcchhhHHHHHHhHHhccccccchhhhhccceeccccc-ccccccccchhhhhhhhh-hcCCcchhHHHHHH
Confidence 000000011010000 001 159999999999976 3322 23999999997 77877777777777
Q ss_pred HHHHHHHHH
Q 012529 264 LQYVVRYIL 272 (461)
Q Consensus 264 i~~i~~~~~ 272 (461)
+..+.+.+.
T Consensus 194 ~~~~~~~~~ 202 (331)
T d1b76a2 194 VEERLKWWQ 202 (331)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
|
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Probab=96.94 E-value=0.002 Score=59.40 Aligned_cols=117 Identities=16% Similarity=0.150 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCC----CC----C-CCcceeeeecCCCc----ccccCCcccc---CCCc
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASD----CE----G-AGEQFCVTTLIPSS----REAAESPVDA---IPKT 210 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~----~e----g-~~~~F~v~~~~~~~----~~~~~s~~~~---l~~~ 210 (461)
=.+++..|...+|+.+.+.||.||.||.|.+.. .+ + ..+.|.++..+... ..+....+.. +...
T Consensus 34 G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~L~P~~~~~~~~i~~~ 113 (268)
T d1nj8a3 34 GFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKL 113 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccceeEEeccccccchhhhhcccCCCchhHHhhhh
Confidence 467899999999999999999999999987522 11 1 22445554433211 1111111000 0000
Q ss_pred -cccCcCc-ceeEEEecccccCCCCCCCC----ccccccce-eeeccCCHHHHHHHHHHHHH
Q 012529 211 -KDGLIDW-SQVYTFGPTFRAENSNTSRH----LAEFWMIE-PELAFADLKDDMACATAYLQ 265 (461)
Q Consensus 211 -~~~~~~~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE-~e~a~~d~~dlm~~~e~li~ 265 (461)
..+.-.+ -|+||+|+|||+|.+ .+| .-||+++| .+....+.++..+..+.++.
T Consensus 114 ~~~Syr~LP~r~~e~~~~fR~E~~--~~~GllR~reF~~~dd~~~~~~~~~~~~~~~~~~~~ 173 (268)
T d1nj8a3 114 WVKVHTDLPIKIYQIVNTFRYETK--HTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAIS 173 (268)
T ss_dssp TCCBTTSCCCCEEEEECCBCCCCS--CCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred hccchhhhheEEeecccccccccc--ccccceeEEEEeeechhceeccccchhhHHHHHHHH
Confidence 0000011 279999999999943 222 35998655 56555677666665555543
|
| >d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 32 KDa subunit (RPA32) fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.018 Score=46.62 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=55.2
Q ss_pred CEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcc-hhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEEeE
Q 012529 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (461)
Q Consensus 30 ~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~-~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~~~ 108 (461)
..|++.|+|.++.....-.-..|.|+|| ..|.|....+... ...... +..|++|.|.|+++.-.. ...|.+..
T Consensus 29 ~~V~iVG~V~~i~~~~t~~~y~idDgTG-~~i~v~~w~~~~~~~~~~~~--i~~g~yVrV~G~lk~f~~---~~~i~~~~ 102 (128)
T d2pi2a1 29 SQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPETYVKVAGHLRSFQN---KKSLVAFK 102 (128)
T ss_dssp SEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEECC-------CCC--CCTTCEEEEEEEEEEETT---EEEEEEEE
T ss_pred EEEEEEEEEEEEEecCCEEEEEEECCCC-CcEEEEEECCCCCCcccccc--ccCCCEEEEEEEEEeeCC---eEEEEEEE
Confidence 4689999999999986666679999998 2488877654321 112234 899999999999976532 35677777
Q ss_pred EEEecc
Q 012529 109 IVLVGK 114 (461)
Q Consensus 109 i~vl~~ 114 (461)
+..+..
T Consensus 103 i~~v~d 108 (128)
T d2pi2a1 103 IMPLED 108 (128)
T ss_dssp EEECSC
T ss_pred EEEeCC
Confidence 665544
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=96.30 E-value=0.0043 Score=59.66 Aligned_cols=44 Identities=27% Similarity=0.383 Sum_probs=31.2
Q ss_pred eEEEecccccCCCCCCCC----ccccccceeeeccCCHHHHHHHHHHHHHH
Q 012529 220 VYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMACATAYLQY 266 (461)
Q Consensus 220 VfeI~~~FR~E~~~t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~ 266 (461)
+.|||+|||||= ++|+ .=||+|+|+|. |++-++-.....-.+..
T Consensus 212 iAQIGk~FRNEI--sPr~~l~R~REF~q~EiE~-Fv~P~~~~~~~~yw~~~ 259 (394)
T d1atia2 212 IAQIGKAFRNEI--TPRNFIFRVREFEQMEIEY-FVRPGEDEYWHRYWVEE 259 (394)
T ss_dssp EEEEEEEEBCCS--SCCTGGGSCSEEEEEEEEE-EECGGGHHHHHHHHHHH
T ss_pred eeeecccccccc--CcccCCcccccceeeeeEE-EEeCCcchHHHHHHHHH
Confidence 899999999994 3454 56999999998 77766554443333333
|
| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Probab=96.25 E-value=0.0046 Score=56.66 Aligned_cols=115 Identities=14% Similarity=0.073 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEecceeecCC-C--C------CCCcceeeeecCCCc----ccccCCcccc---CCC-
Q 012529 147 VARVRNALAYATHKFFQENGFIWISSPIITASD-C--E------GAGEQFCVTTLIPSS----REAAESPVDA---IPK- 209 (461)
Q Consensus 147 ~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~-~--e------g~~~~F~v~~~~~~~----~~~~~s~~~~---l~~- 209 (461)
=.+++..|...+|+.+ ++||.||.||.|.+.. . . -+.+.|.+...+... ..+....+.. +..
T Consensus 32 G~~i~~~i~~~~~~~~-~~G~~ev~~P~l~~~~~l~~~sgh~~~~~~e~f~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~ 110 (265)
T d1nj1a3 32 GFMIRKNTLKILRRIL-DRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFAL 110 (265)
T ss_dssp HHHHHHHHHHHHHHHH-TTTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HhcCceehhhhhhhhhhhhhcccccccccccceeeeccCccccceeEEeecccccceEEeeee
Confidence 4577888999999876 5699999999876432 1 1 123667765432210 1111110000 000
Q ss_pred ccccCcCc-ceeEEEecccccCCCCCCCC----ccccccce-eeeccCCHHHHHHHHHHHH
Q 012529 210 TKDGLIDW-SQVYTFGPTFRAENSNTSRH----LAEFWMIE-PELAFADLKDDMACATAYL 264 (461)
Q Consensus 210 ~~~~~~~~-~rVfeI~~~FR~E~~~t~rH----l~EFtmlE-~e~a~~d~~dlm~~~e~li 264 (461)
...+--.+ -|+||+|+|||+|.+ .+| .=|||++| .+....+.++.....+.++
T Consensus 111 ~~~SyrdLPlr~~q~~~~fR~E~~--~~~Gl~R~reF~~~~d~~~~~~~~~~~~~e~~~~~ 169 (265)
T d1nj1a3 111 WVRSHTDLPMRFYQVVNTFRYETK--HTRPLIRVREITTFKEAHTIHATASEAEEQVERAV 169 (265)
T ss_dssp HCCBTTTCCEEEEEEEEEECCCCS--CCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred eeccccccceEEEeeccceeeecc--cCcCCEEEEEEEEeccceeecCCHHHHHHHhhhhH
Confidence 00000012 279999999999943 222 34998665 5544456665555444443
|
| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Seryl-tRNA synthetase (SerRS) species: Thermus thermophilus, strain hb27 [TaxId: 274]
Probab=96.01 E-value=0.0046 Score=58.10 Aligned_cols=120 Identities=17% Similarity=0.237 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCcEEEecceeecCCC-CCCC-------cceeeeecCCCccccc-CC--ccccCCCccc-
Q 012529 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAA-ES--PVDAIPKTKD- 212 (461)
Q Consensus 145 ~~~l~~Rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~-eg~~-------~~F~v~~~~~~~~~~~-~s--~~~~l~~~~~- 212 (461)
....++.-++++.+.+++.++||.||.||.|..... +|++ +.|.+. ....++. +| +...++....
T Consensus 53 g~~a~Le~AL~~~~ld~~~~~gy~~v~~P~lv~~~~~~~~G~~p~f~~~~y~~~---~~~~~LipTsE~~l~~~~~~~i~ 129 (311)
T d1seta2 53 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA---ETDLYLTGTAEVVLNALHSGEIL 129 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBT---TSSEEECSSTHHHHHHTTTTCEE
T ss_pred CHHHHHHHHHHHHHHHhhhcccceEEeechhhccchhhhccccccccccccccc---ccceeecccccchhhhhhhhhhh
Confidence 456777889999999999999999999999998543 2222 223221 1112221 11 0001111000
Q ss_pred cCcCc-ceeEEEecccccCCCC------CCCCccccccceeeec-cCCHHHHHHHHHHHHHHH
Q 012529 213 GLIDW-SQVYTFGPTFRAENSN------TSRHLAEFWMIEPELA-FADLKDDMACATAYLQYV 267 (461)
Q Consensus 213 ~~~~~-~rVfeI~~~FR~E~~~------t~rHl~EFtmlE~e~a-~~d~~dlm~~~e~li~~i 267 (461)
....+ -|+++.+||||.|... +--...+|+.+|.... ..+.++.....++++...
T Consensus 130 ~~~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~ 192 (311)
T d1seta2 130 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENA 192 (311)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHH
T ss_pred hhhhccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHHHHHHHHH
Confidence 00012 2699999999999532 2223469999997643 236777777777777654
|
| >d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Hypothetical protein YgiW family: Hypothetical protein YgiW domain: Hypothetical protein YgiW species: Escherichia coli [TaxId: 562]
Probab=95.61 E-value=0.017 Score=44.97 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=53.6
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
..+..|++.|.|.+.-..-+. .++|++|. |+|-++.+. +...-+++++-|.+.|.+-+.- + ..||.|
T Consensus 34 ~Ddt~V~L~G~Iv~~l~~d~Y---~F~D~TG~--I~VeId~~~-----w~g~~v~p~~kV~i~GevDk~~-~--~~eIdV 100 (106)
T d1nnxa_ 34 RDDTWVTLRGNIVERISDDLY---VFKDASGT--INVDIDHKR-----WNGVTVTPKDTVEIQGEVDKDW-N--SVEIDV 100 (106)
T ss_dssp CSSEEEEEEEEEEEEEETTEE---EEEETTEE--EEEECCGGG-----STTCCCCTTSCEEEEEEEEEET-T--EEEEEE
T ss_pred cCCCeEEEEEEEEEEeCCceE---EEECCCCc--EEEEEChhh-----cCCcccCCCCEEEEEEEEcCCC-C--ceEEEE
Confidence 457789999999776555443 45999974 888776542 1112289999999999998763 2 479999
Q ss_pred eEEEEe
Q 012529 107 NKIVLV 112 (461)
Q Consensus 107 ~~i~vl 112 (461)
+.|++|
T Consensus 101 ~~I~~l 106 (106)
T d1nnxa_ 101 KQIRKV 106 (106)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 998875
|
| >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Thermotoga maritima [TaxId: 2336]
Probab=95.16 E-value=0.0073 Score=55.58 Aligned_cols=85 Identities=11% Similarity=0.008 Sum_probs=49.4
Q ss_pred HHHHhhhCCcEEEecceeecCCCCCCCcceeeeecCCCcccccCCccccCC--Cccc--cCcCcceeEEEecccccCCCC
Q 012529 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP--KTKD--GLIDWSQVYTFGPTFRAENSN 233 (461)
Q Consensus 158 iR~ff~~~gF~EV~TPiL~~~~~eg~~~~F~v~~~~~~~~~~~~s~~~~l~--~~~~--~~~~~~rVfeI~~~FR~E~~~ 233 (461)
+++-..++||-||.||++.......+. .| .+.. ...+...|...++ +..+ ....-.|+|.+|+|||.++.
T Consensus 12 f~~~~~~~Gy~~i~tP~~E~~e~~~~~-~F-~D~~---g~~l~LRpD~T~~iaR~~~~~~~~~p~k~~Y~g~VfR~~~~- 85 (275)
T d1usya_ 12 FYSKATKKGFSPFFVPALEKAEEPAGN-FF-LDRK---GNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYRYSGS- 85 (275)
T ss_dssp HHHHHHHTTCEECCCCSEEECSSCCSS-CE-EETT---SCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEEEETT-
T ss_pred HHHHHHHcCCceeecCccccccccccc-ee-EcCC---CCEEEECCCCcHHHHHHHHHcCCCCCeeeeEEeeEEEeCCC-
Confidence 344446799999999999986643333 34 2322 1223222221111 0000 11012389999999998754
Q ss_pred CCCCccccccceeeeccC
Q 012529 234 TSRHLAEFWMIEPELAFA 251 (461)
Q Consensus 234 t~rHl~EFtmlE~e~a~~ 251 (461)
+.-||+|+.+|.-..
T Consensus 86 ---~~re~~Q~G~EiiG~ 100 (275)
T d1usya_ 86 ---DLVAEYQLGLEKVPR 100 (275)
T ss_dssp ---EEEEEEEEEEEEESC
T ss_pred ---cccceeecCceeech
Confidence 245999999998654
|
| >d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 70 KDa subunit (RPA70) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.023 Score=45.05 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=61.6
Q ss_pred eeccccCCCcCCCCCCCCEEEEEEEEeee---e---c---CCCeEEEEEEcCccCccEEEEEeCCCc-chhhhhhcCCCC
Q 012529 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R---A---QSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITT 82 (461)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~v~v~G~v~~~---R---~---~~~~~Fi~l~D~s~~~~iQvv~~~~~~-~~~~~~~~~l~~ 82 (461)
.|++|... ...++|.|||.++ | . .|++.-++|.|.+| .|++++..+.. .|. .. |..
T Consensus 4 PI~~L~p~--------~~~~~I~~RV~~k~~~r~f~~~~~~g~v~~~~l~De~G--~I~~t~~~~~~~~f~--~~--l~~ 69 (116)
T d1jmca1 4 PIASLTPY--------QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQVDKFF--PL--IEV 69 (116)
T ss_dssp CGGGCCTT--------CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHHHHHG--GG--CCT
T ss_pred eHHHcCCC--------CCCEEEEEEEEEeccceEEECCCCCceEEEEEEEcCCC--CEEEEEchhhhhhhH--hh--ccc
Confidence 45666643 3458899999654 2 2 25778889999998 39999986543 221 24 999
Q ss_pred CcEEEEEe-eEeecCC----CCccEEEEEeEEEEeccCCC
Q 012529 83 GASIWIQG-NVVPSQG----SKQKVELKVNKIVLVGKSDP 117 (461)
Q Consensus 83 g~~V~v~G-~~~~~~~----~~~~~el~~~~i~vl~~~~~ 117 (461)
|++..++| .|..... ..+.+||....-+.+.+|+.
T Consensus 70 G~vy~i~~~~V~~~~~~y~~~~~~yei~f~~~T~I~~~~d 109 (116)
T d1jmca1 70 NKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCED 109 (116)
T ss_dssp TCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECCS
T ss_pred CCEEEEcceEEEEccCcEeccCCcEEEEECCCcEEEECCC
Confidence 99999985 5654322 23568999887766666643
|
| >d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Archaeal ssDNA-binding protein species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.65 E-value=0.052 Score=42.77 Aligned_cols=84 Identities=15% Similarity=0.130 Sum_probs=56.8
Q ss_pred eeccccCCCcCCCCCCCCEEEEEEEEeee---ec------CCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCC
Q 012529 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (461)
Q Consensus 13 ~i~~i~~~~~~~~~~~~~~v~v~G~v~~~---R~------~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g 83 (461)
+|++|.+. ...|+|.|+|.++ |. .+++..+.|.|.+|. |.+++..+. +.. |..|
T Consensus 4 kI~dL~pg--------~~~v~i~~~V~~~~~~r~~~~~~g~~~v~~~~i~DeTG~--i~~~~W~~~-----~~~--l~~G 66 (115)
T d1o7ia_ 4 KVGNLKPN--------MESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGR--VKLTLWGKH-----AGS--IKEG 66 (115)
T ss_dssp CGGGCCTT--------CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEE--EEEEEEGGG-----TTC--CCTT
T ss_pred cHHHCCCC--------CCCEEEEEEEEECCCCceeecCCCCEEEEEEEEEcCCCe--EEEEEeccc-----ccc--CCCC
Confidence 56666652 2348899999886 33 257788899999974 999887542 334 9999
Q ss_pred cEEEEEeeEeecCCCCccEEEEEeEEEEeccC
Q 012529 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (461)
Q Consensus 84 ~~V~v~G~~~~~~~~~~~~el~~~~i~vl~~~ 115 (461)
|+|.++|--++.-. +.+||.+.+-..+.++
T Consensus 67 dvv~i~na~v~~~~--g~~el~~~~~s~i~~~ 96 (115)
T d1o7ia_ 67 QVVKIENAWTTAFK--GQVQLNAGSKTKIAEA 96 (115)
T ss_dssp CEEEEEEEEEEEET--TEEEEEECTTCEEEEC
T ss_pred CEEEEeeEEEEEEC--CeEEEEECCCeEEEEC
Confidence 99999854433322 3689999664334443
|
| >d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 14 KDa (RPA14) subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.26 E-value=0.15 Score=40.09 Aligned_cols=70 Identities=11% Similarity=0.161 Sum_probs=49.9
Q ss_pred CCCCEEEEEEEEeeeecCCCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccEEEEE
Q 012529 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~~~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~el~~ 106 (461)
+.|+.|++.|+|.+++..|+. +.+++.-+ ..++|.+.... . ...+.+|.|.|++.. +..|.+
T Consensus 18 ~~Gk~V~ivGkV~~v~~~g~~--~~~~s~D~-~~V~v~l~~~~-------~--~~~~~~vEViG~V~~------~~sI~~ 79 (115)
T d2pi2e1 18 FIDKPVCFVGRLEKIHPTGKM--FILSDGEG-KNGTIELMEPL-------D--EEISGIVEVVGRVTA------KATILC 79 (115)
T ss_dssp STTCEEEEEEEEEEECTTSSE--EEEECTTS-CEEEEECSSCC-------S--SCCCSEEEEEEEECT------TSCEEE
T ss_pred hCCCeEEEEEEEEEEcCCCCE--EEEEcCCC-CEEEEEeCCCC-------C--CccCCeEEEEEEECC------CCcEEE
Confidence 789999999999999987754 35665443 24666655432 2 677889999999932 345788
Q ss_pred eEEEEecc
Q 012529 107 NKIVLVGK 114 (461)
Q Consensus 107 ~~i~vl~~ 114 (461)
..+.-++.
T Consensus 80 ~~~~~fg~ 87 (115)
T d2pi2e1 80 TSYVQFKE 87 (115)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 77776664
|
| >d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.34 E-value=0.045 Score=50.53 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=33.6
Q ss_pred eeEEEecccccCCCC-CCCC----ccccccceeeeccCCHHHHHHHHHHHHHHHHH
Q 012529 219 QVYTFGPTFRAENSN-TSRH----LAEFWMIEPELAFADLKDDMACATAYLQYVVR 269 (461)
Q Consensus 219 rVfeI~~~FR~E~~~-t~rH----l~EFtmlE~e~a~~d~~dlm~~~e~li~~i~~ 269 (461)
++-|||+|||+|.+. ++++ .=||||+|++. |++-++..+..+.++.....
T Consensus 141 ~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~-F~~pe~~~~~~~~~~~~~~~ 195 (290)
T d1g5ha2 141 GLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRHRLL 195 (290)
T ss_dssp EEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccccccccCCcccccceeeEeEeeeeEE-EeCCcchHHHHHHHHHHHHH
Confidence 489999999966321 1221 23999999997 78888877766666655433
|
| >d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RecG "wedge" domain domain: RecG "wedge" domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.83 E-value=0.33 Score=40.89 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=43.5
Q ss_pred CCCCEEEEEEEEeeeec--C--CCeEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecC
Q 012529 27 RVGLMIVVAGWVRTLRA--Q--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (461)
Q Consensus 27 ~~~~~v~v~G~v~~~R~--~--~~~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~ 96 (461)
..|+.|+|.|.|.+.+. . ..+.-+.+.|++|. |.+++=...-....+ . ...|+.|.|.|++....
T Consensus 58 ~~g~~vti~g~V~~~~~~~~~~~~~~~~~v~D~~g~--i~l~fFn~~~~~~~~-k--~~~G~~v~v~Gkvk~~~ 126 (180)
T d1gm5a2 58 LPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVH--VPLKWFNQDYLQTYL-K--QLTGKEVFVTGTVKSNA 126 (180)
T ss_dssp CSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCC--EEEEECSCCTTHHHH-H--TTCSSCEEEEEEECSCC
T ss_pred CcceeeeeeeEEEeeccccccccceeEEEEEeccce--EEEEEeCcHHHHHHH-h--hhcCceEEEEEEEeecc
Confidence 45788999999987643 2 34445778899874 888765432111112 2 45799999999997654
|
| >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain species: Thermus thermophilus [TaxId: 274]
Probab=82.66 E-value=0.55 Score=40.46 Aligned_cols=26 Identities=8% Similarity=0.041 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhCCcEEEecceeecCC
Q 012529 154 LAYATHKFFQENGFIWISSPIITASD 179 (461)
Q Consensus 154 i~~~iR~ff~~~gF~EV~TPiL~~~~ 179 (461)
..+.+|++|...||.||-|-.+++..
T Consensus 20 ~~~~ir~~L~~~Gf~Ev~tysf~s~~ 45 (207)
T d1jjcb5 20 KEQRLREVLSGLGFQEVYTYSFMDPE 45 (207)
T ss_dssp HHHHHHHHHHHHTCEECCCCSEECTT
T ss_pred HHHHHHHHHHHCCcchhcCCCcCCHH
Confidence 34568999999999999999998743
|
| >d1sr3a_ b.40.9.1 (A:) Heme chaperone CcmE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Heme chaperone CcmE family: Heme chaperone CcmE domain: Heme chaperone CcmE species: Escherichia coli [TaxId: 562]
Probab=81.30 E-value=5.7 Score=30.41 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=51.8
Q ss_pred CCCCEEEEEEEEee--e-ecCCC-eEEEEEEcCccCccEEEEEeCCCcchhhhhhcCCCCCcEEEEEeeEeecCCCCccE
Q 012529 27 RVGLMIVVAGWVRT--L-RAQSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (461)
Q Consensus 27 ~~~~~v~v~G~v~~--~-R~~~~-~~Fi~l~D~s~~~~iQvv~~~~~~~~~~~~~~~l~~g~~V~v~G~~~~~~~~~~~~ 102 (461)
..|++++|.|.|.. + |..++ -.-..|.|+.. .|.|..+.-.++ ..+-|.-|.|+|++... -
T Consensus 26 ~~g~~iRvgG~V~~gSi~~~~~~~~~~F~itD~~~--~i~V~Y~GilPd-------lF~eg~~VVveG~~~~~------~ 90 (114)
T d1sr3a_ 26 EVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEG--SVDVSYEGILPD-------LFREGQGVVVQGELEKG------N 90 (114)
T ss_dssp CTTSEEEEEEEECTTTCEECSSSSEEEEEEECSSC--EEEEEEESCCCT-------TCCTTSEEEEEEEECSS------S
T ss_pred cCCcEEEEeeEEEEeEEEeecCcceEEEEEccCCc--EEEEEecCCCCh-------hhcCCCeEEEEEEECCC------C
Confidence 45899999999963 4 44433 23346789874 599998865443 16779999999998432 1
Q ss_pred EEEEeEEEEeccCCCCC
Q 012529 103 ELKVNKIVLVGKSDPSY 119 (461)
Q Consensus 103 el~~~~i~vl~~~~~~~ 119 (461)
.+.++ +||.||+..|
T Consensus 91 ~f~A~--~vlaKh~e~Y 105 (114)
T d1sr3a_ 91 HILAK--EVLAKHDENY 105 (114)
T ss_dssp EEEES--SCBCCSCCCC
T ss_pred EEEEE--EEEecCCCCC
Confidence 23443 5889998664
|