Citrus Sinensis ID: 012667

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLYKE
cHHHHHHHHHHHHccccccccEEEEccHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccHHHHHccccccccccHHHHHHHHHccccEEccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHHHcHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHcccccccccHHHHHHHccc
cHHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccHHHHHHHccccccccHHHHHHHHHcccEEEEcccccHHccccccEEcccEEccccccccEccccccHHHHHHHHcccccEEEEEEcccccHHHHHHcccEEEEcccccEccccEccccccccEEEEEEccHHHHHHHHHHHEccccccHHHHHcccccHHHHHcccccccEEEEEcHHHHcccccHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEEEEEEccHHHHHHHHHHHHHHHccccccEEEEEEEccHcHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccEccccccccccccccEEEHccEEEEEEHccccccEEcccccccccccEEEEEEcccccHHHHHHHHHHHHHHccHHHcccHHHHHHHccc
MVAERFIAAVressnppmkmsfFINYNEEDILKQATEStlrykkgepisvLDGVLIAVkdeidcspypttggtkwlhkvrpctgdacCVMRLRLCGAILVgktnmhelgagtsginphygvarnpydpskitggsssgSAAVVAAGLCPvalgvdgggsvrmpaalcgvvgfkptfgriplsgvlplnwtVGMVGILAATVEDALVVYAAingplpsqqptvslpkvsfpllksatsISAIKLAKYdawfndcsddIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKincsdqgwDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGnflglpavtvpvgydtaglpiglqfigkpwseptLMHIAFAMQALCIsefrkpkvfhdllyke
MVAERFIaavressnppmkMSFFINYNEEDILKQATEStlrykkgepiSVLDGVLIAVKDEIDCSPypttggtkwlhkvRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTayeikddalktGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLYKE
MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITggsssgsaavvaagLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLYKE
********************SFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVA*****************AAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLP****TVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLY**
MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLYK*
MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKI*********AVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLYKE
MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSS********AGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLYK*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLYKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query458 2.2.26 [Sep-21-2011]
Q7XJJ7607 Fatty acid amide hydrolas yes no 0.989 0.746 0.471 1e-120
B2V855485 Glutamyl-tRNA(Gln) amidot yes no 0.954 0.901 0.310 3e-56
A0Q2Q0485 Glutamyl-tRNA(Gln) amidot yes no 0.914 0.863 0.313 2e-50
Q1IUE4480 Glutamyl-tRNA(Gln) amidot yes no 0.917 0.875 0.310 2e-50
B8I601486 Glutamyl-tRNA(Gln) amidot yes no 0.923 0.870 0.312 1e-49
Q9JTZ5481 Glutamyl-tRNA(Gln) amidot yes no 0.919 0.875 0.306 2e-48
Q93LE2485 Glutamyl-tRNA(Gln) amidot N/A no 0.914 0.863 0.337 6e-47
B3QQF5481 Glutamyl-tRNA(Gln) amidot yes no 0.945 0.900 0.311 1e-46
Q8PXJ1476 Glutamyl-tRNA(Gln) amidot yes no 0.932 0.897 0.304 1e-46
Q97EX8478 Glutamyl-tRNA(Gln) amidot yes no 0.908 0.870 0.294 1e-46
>sp|Q7XJJ7|FAAH_ARATH Fatty acid amide hydrolase OS=Arabidopsis thaliana GN=FAAH PE=1 SV=1 Back     alignment and function desciption
 Score =  432 bits (1111), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/458 (47%), Positives = 300/458 (65%), Gaps = 5/458 (1%)

Query: 2   VAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDE 61
           VA+R I+ + E         F I ++  +++KQA  ST R+++G PISVLDG+ + +KD+
Sbjct: 148 VAKRIISIIEEFGYDKPPTPFLIRFDANEVIKQAEASTRRFEQGNPISVLDGIFVTIKDD 207

Query: 62  IDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGV 121
           IDC P+PT GGT WLH+ R    D+  V +LR CGAIL+GK NMHELG GT+G N +YG 
Sbjct: 208 IDCLPHPTNGGTTWLHEDRSVEKDSAVVSKLRSCGAILLGKANMHELGMGTTGNNSNYGT 267

Query: 122 ARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPL 181
            RNP+DP + TGGSSSGSAA+VAAGLC  ALG DGGGSVR+P+ALCG+ G K T+GR  +
Sbjct: 268 TRNPHDPKRYTGGSSSGSAAIVAAGLCSAALGTDGGGSVRIPSALCGITGLKTTYGRTDM 327

Query: 182 SGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKS---ATSI 238
           +G L    TV ++G LA+++EDA +VYAAI G   + +  +      FP L S   + +I
Sbjct: 328 TGSLCEGGTVEIIGPLASSLEDAFLVYAAILGSSSADRYNLKPSPPCFPKLLSHNGSNAI 387

Query: 239 SAIKLAKYDAWFND-CSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGS 297
            +++L KY  WFND  S DI   C   +  L   +G KVVE+ +P +E MR AH ++IGS
Sbjct: 388 GSLRLGKYTKWFNDVSSSDISDKCEDILKLLSNNHGCKVVEIVVPELEEMRAAHVISIGS 447

Query: 298 ECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADV 357
              +SL+ Y +    S   +D R + +++ SFS+ +YI AQ +R   M+ H N+F   DV
Sbjct: 448 PTLSSLTPYCEAGKNSKLSYDTRTSFAIFRSFSASDYIAAQCLRRRLMEYHLNIFKDVDV 507

Query: 358 IVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIG 417
           IV PTTG+TA  I  DALK GE +      L+R+ +A N LG PA++VPVGYD  GLPIG
Sbjct: 508 IVTPTTGMTAPVIPPDALKNGETNIQVTTDLMRFVLAANLLGFPAISVPVGYDKEGLPIG 567

Query: 418 LQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLL 455
           LQ +G+PW+E T++ +A A++ L     +KP +F+D+L
Sbjct: 568 LQIMGRPWAEATVLGLAAAVEELA-PVTKKPAIFYDIL 604
Degrades bioactive fatty acid amides to their corresponding acids, thereby serving to terminate the signaling functions of these molecules. Converts N-actylethanolamine (NAE) to ethanolamine. Can also use oleamide or 2-arachidonylglycerol as substrates, but not indole-3-acetamide, 1-naphtalene-acetamide, nicotinic acid amide or L-asparagine. Might be involved in abscisic acid signaling and plant defense through distinctly different mechanisms not involving the catalytic activity.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 9
>sp|B2V855|GATA_SULSY Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|A0Q2Q0|GATA_CLONN Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium novyi (strain NT) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q1IUE4|GATA_KORVE Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Koribacter versatilis (strain Ellin345) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B8I601|GATA_CLOCE Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q9JTZ5|GATA_NEIMA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q93LE2|GATA_GEOSE Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus stearothermophilus GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B3QQF5|GATA_CHLP8 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobaculum parvum (strain NCIB 8327) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q8PXJ1|GATA_METMA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q97EX8|GATA2_CLOAB Glutamyl-tRNA(Gln) amidotransferase subunit A 2 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gatA2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query458
224081068 611 predicted protein [Populus trichocarpa] 1.0 0.749 0.764 0.0
224093658 578 predicted protein [Populus trichocarpa] 0.997 0.790 0.759 0.0
449457323 608 PREDICTED: fatty acid amide hydrolase-li 0.993 0.748 0.765 0.0
357520143 609 Glutamyl-tRNA(Gln) amidotransferase subu 0.991 0.745 0.758 0.0
225438343 610 PREDICTED: fatty acid amide hydrolase [V 0.997 0.749 0.781 0.0
356511201 608 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.995 0.75 0.742 0.0
356527536 609 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.995 0.748 0.750 0.0
356518808 621 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.997 0.735 0.722 0.0
356507431 620 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.997 0.737 0.718 0.0
357160660 606 PREDICTED: glutamyl-tRNA(Gln) amidotrans 0.991 0.749 0.684 1e-179
>gi|224081068|ref|XP_002306283.1| predicted protein [Populus trichocarpa] gi|222855732|gb|EEE93279.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/459 (76%), Positives = 405/459 (88%), Gaps = 1/459 (0%)

Query: 1   MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKD 60
           MVAE+ + A+RESS+PPM M+FFINY+ EDIL+QA EST RY++GEPIS LDGV IA+KD
Sbjct: 153 MVAEQLVTAIRESSSPPMDMAFFINYDAEDILRQAKESTRRYERGEPISALDGVPIAIKD 212

Query: 61  EIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYG 120
           EIDCSPYPTTGGTKWLHK R C GDACCVMRLR CGA+++GKTNMHELGAGTSGINPHYG
Sbjct: 213 EIDCSPYPTTGGTKWLHKFRSCKGDACCVMRLRSCGAVIIGKTNMHELGAGTSGINPHYG 272

Query: 121 VARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIP 180
             RNPY+P  I+GGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGR+P
Sbjct: 273 ATRNPYNPGMISGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRVP 332

Query: 181 LSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPT-VSLPKVSFPLLKSATSIS 239
            SGVLPLNWTVGMVG+LA T+EDA +VYAAINGPLPS + + + LPKV FPLL+S  S+S
Sbjct: 333 HSGVLPLNWTVGMVGVLAGTIEDAFIVYAAINGPLPSHETSAIPLPKVYFPLLQSTNSVS 392

Query: 240 AIKLAKYDAWFNDCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSEC 299
            + LA+Y  WF+DC DDIR CCS+A+ +L E++GWK V+VTIP+IE MRLAHYLTIGSEC
Sbjct: 393 NVILARYGEWFSDCGDDIRTCCSQALHQLSEKFGWKTVDVTIPDIESMRLAHYLTIGSEC 452

Query: 300 STSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIV 359
           + +LSSYL+K++ ++ GWD RVAL VYGSFS +EYIKAQK+R+ QMQ HRN+F KADVIV
Sbjct: 453 TAALSSYLEKLDNAESGWDLRVALCVYGSFSGEEYIKAQKLRSRQMQFHRNIFTKADVIV 512

Query: 360 VPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQ 419
            PT GVTAY I DDALKTGELDYI GAALVRYQIAGNFLGLPAVTVPVGYD  GLPIGLQ
Sbjct: 513 TPTVGVTAYPIFDDALKTGELDYINGAALVRYQIAGNFLGLPAVTVPVGYDKNGLPIGLQ 572

Query: 420 FIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLLYKE 458
           FIG+PWSEPTL+HIA+AMQ LC+S++RKP+VF+DLL K+
Sbjct: 573 FIGRPWSEPTLIHIAYAMQTLCVSKYRKPQVFYDLLEKD 611

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224093658|ref|XP_002309950.1| predicted protein [Populus trichocarpa] gi|222852853|gb|EEE90400.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449457323|ref|XP_004146398.1| PREDICTED: fatty acid amide hydrolase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357520143|ref|XP_003630360.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] gi|355524382|gb|AET04836.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] Back     alignment and taxonomy information
>gi|225438343|ref|XP_002272907.1| PREDICTED: fatty acid amide hydrolase [Vitis vinifera] gi|296082617|emb|CBI21622.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356511201|ref|XP_003524317.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] Back     alignment and taxonomy information
>gi|356527536|ref|XP_003532365.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] Back     alignment and taxonomy information
>gi|356518808|ref|XP_003528069.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] Back     alignment and taxonomy information
>gi|356507431|ref|XP_003522470.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] Back     alignment and taxonomy information
>gi|357160660|ref|XP_003578835.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query458
TAIR|locus:2179371607 FAAH "AT5G64440" [Arabidopsis 0.989 0.746 0.443 5.3e-104
UNIPROTKB|F1NQ46481 LOC418339 "Uncharacterized pro 0.973 0.927 0.355 9.6e-73
DICTYBASE|DDB_G0275967637 DDB_G0275967 "fatty acid amid 0.967 0.695 0.359 2.6e-70
ASPGD|ASPL0000052374619 AN0828 [Emericella nidulans (t 0.960 0.710 0.321 1.2e-49
TIGR_CMR|CBU_1474483 CBU_1474 "glutamyl-tRNA(Gln) a 0.646 0.612 0.311 1.2e-47
UNIPROTKB|F1NLA0514 QRSL1 "Uncharacterized protein 0.646 0.575 0.329 2.3e-46
TAIR|locus:2102380537 AT3G25660 [Arabidopsis thalian 0.652 0.556 0.320 1.6e-45
TIGR_CMR|CHY_1102485 CHY_1102 "glutamyl-tRNA(Gln) a 0.622 0.587 0.301 2.7e-45
RGD|1359490525 Qrsl1 "glutaminyl-tRNA synthas 0.620 0.540 0.318 4.2e-44
MGI|MGI:1923813525 Qrsl1 "glutaminyl-tRNA synthas 0.620 0.540 0.308 1e-42
TAIR|locus:2179371 FAAH "AT5G64440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 203/458 (44%), Positives = 286/458 (62%)

Query:     2 VAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDE 61
             VA+R I+ + E         F I ++  +++KQA  ST R+++G PISVLDG+ + +KD+
Sbjct:   148 VAKRIISIIEEFGYDKPPTPFLIRFDANEVIKQAEASTRRFEQGNPISVLDGIFVTIKDD 207

Query:    62 IDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGV 121
             IDC P+PT GGT WLH+ R    D+  V +LR CGAIL+GK NMHELG GT+G N +YG 
Sbjct:   208 IDCLPHPTNGGTTWLHEDRSVEKDSAVVSKLRSCGAILLGKANMHELGMGTTGNNSNYGT 267

Query:   122 ARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPL 181
              RNP+DP + T              LC  ALG DGGGSVR+P+ALCG+ G K T+GR  +
Sbjct:   268 TRNPHDPKRYTGGSSSGSAAIVAAGLCSAALGTDGGGSVRIPSALCGITGLKTTYGRTDM 327

Query:   182 SGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKS---ATSI 238
             +G L    TV ++G LA+++EDA +VYAAI G   + +  +      FP L S   + +I
Sbjct:   328 TGSLCEGGTVEIIGPLASSLEDAFLVYAAILGSSSADRYNLKPSPPCFPKLLSHNGSNAI 387

Query:   239 SAIKLAKYDAWFNDCSD-DIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGS 297
              +++L KY  WFND S  DI   C   +  L   +G KVVE+ +P +E MR AH ++IGS
Sbjct:   388 GSLRLGKYTKWFNDVSSSDISDKCEDILKLLSNNHGCKVVEIVVPELEEMRAAHVISIGS 447

Query:   298 ECSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADV 357
                +SL+ Y +    S   +D R + +++ SFS+ +YI AQ +R   M+ H N+F   DV
Sbjct:   448 PTLSSLTPYCEAGKNSKLSYDTRTSFAIFRSFSASDYIAAQCLRRRLMEYHLNIFKDVDV 507

Query:   358 IVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIG 417
             IV PTTG+TA  I  DALK GE +      L+R+ +A N LG PA++VPVGYD  GLPIG
Sbjct:   508 IVTPTTGMTAPVIPPDALKNGETNIQVTTDLMRFVLAANLLGFPAISVPVGYDKEGLPIG 567

Query:   418 LQFIGKPWSEPTLMHIAFAMQALCISEFRKPKVFHDLL 455
             LQ +G+PW+E T++ +A A++ L     +KP +F+D+L
Sbjct:   568 LQIMGRPWAEATVLGLAAAVEELA-PVTKKPAIFYDIL 604
GO:0004040 "amidase activity" evidence=ISS
GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0047412 "N-(long-chain-acyl)ethanolamine deacylase activity" evidence=IMP
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0070291 "N-acylethanolamine metabolic process" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=IDA
UNIPROTKB|F1NQ46 LOC418339 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275967 DDB_G0275967 "fatty acid amid hydrolase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000052374 AN0828 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1474 CBU_1474 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLA0 QRSL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2102380 AT3G25660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1102 CHY_1102 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
RGD|1359490 Qrsl1 "glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1923813 Qrsl1 "glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A9N8Z4GATA_COXBR6, ., 3, ., 5, ., -0.31570.94750.8985yesno
Q46E35GATA_METBF6, ., 3, ., 5, ., -0.31820.88640.8547yesno
Q5N0K5GATA_SYNP66, ., 3, ., 5, ., -0.32180.92350.8830yesno
Q83BM9GATA_COXBU6, ., 3, ., 5, ., -0.31570.94750.8985yesno
B2IYD7GATA_NOSP76, ., 3, ., 5, ., -0.30710.92570.8724yesno
Q3J7V7GATA_NITOC6, ., 3, ., 5, ., -0.31410.91700.8695yesno
Q8KFQ4GATA_CHLTE6, ., 3, ., 5, ., -0.30470.90170.8586yesno
Q8THJ1GATA_METAC6, ., 3, ., 5, ., -0.31590.84710.8151yesno
A9KBI0GATA_COXBN6, ., 3, ., 5, ., -0.31570.94750.8985yesno
Q8YY02GATA_NOSS16, ., 3, ., 5, ., -0.32470.91260.8600yesno
A4IJZ2GATA_GEOTN6, ., 3, ., 5, ., -0.32890.91480.8639yesno
B2V855GATA_SULSY6, ., 3, ., 5, ., -0.31070.95410.9010yesno
Q31LC2GATA_SYNE76, ., 3, ., 5, ., -0.32180.92350.8830yesno
B0C269GATA_ACAM16, ., 3, ., 5, ., -0.32510.89510.8506yesno
B7KLL5GATA_CYAP76, ., 3, ., 5, ., -0.32590.90170.8550yesno
F7A3P2GATA_ORNAN6, ., 3, ., 5, ., -0.31130.93440.8167yesno
Q2RGY4GATA_MOOTA6, ., 3, ., 5, ., -0.30850.91920.8644yesno
B0JSX3GATA_MICAN6, ., 3, ., 5, ., -0.31480.95190.9026yesno
Q12VH1GATA_METBU6, ., 3, ., 5, ., -0.32540.83400.8042yesno
B8I601GATA_CLOCE6, ., 3, ., 5, ., -0.31290.92350.8703yesno
B6J4H5GATA_COXB16, ., 3, ., 5, ., -0.31570.94750.8985yesno
B1I3K2GATA_DESAP6, ., 3, ., 5, ., -0.32010.91480.8516yesno
Q9JTZ5GATA_NEIMA6, ., 3, ., 5, ., -0.30600.91920.8752yesno
B3QQF5GATA_CHLP86, ., 3, ., 5, ., -0.31110.94540.9002yesno
Q2YU51GATA_STAAB6, ., 3, ., 5, ., -0.32080.89950.8494yesno
A4SGD2GATA_PROVI6, ., 3, ., 5, ., -0.32190.88200.8381yesno
B8GL95GATA_THISH6, ., 3, ., 5, ., -0.32320.91480.8657yesno
B1XJG8GATA_SYNP26, ., 3, ., 5, ., -0.32310.92790.8762yesno
B6IZ25GATA_COXB26, ., 3, ., 5, ., -0.31570.94750.8985yesno
Q49YU4GATA_STAS16, ., 3, ., 5, ., -0.31860.89950.8494yesno
Q1IUE4GATA_KORVE6, ., 3, ., 5, ., -0.31040.91700.875yesno
Q8PXJ1GATA_METMA6, ., 3, ., 5, ., -0.30420.93230.8970yesno
C0QRF9GATA_PERMH6, ., 3, ., 5, ., -0.32420.85370.8061yesno
A0Q2Q0GATA_CLONN6, ., 3, ., 5, ., -0.31330.91480.8639yesno
Q8DK65GATA_THEEB6, ., 3, ., 5, ., -0.32670.91480.8692yesno
Q3A2K0GATA_PELCD6, ., 3, ., 5, ., -0.31630.90170.8515yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00050093
hypothetical protein (611 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_LG_VIII001519
glutamyl-tRNA(Gln) amidotransferase (EC-6.3.5.7) (506 aa)
• • • • 0.721
estExt_fgenesh4_pm.C_LG_X0145
glutamyl-tRNA(Gln) amidotransferase (529 aa)
• • • • 0.628
fgenesh4_pg.C_scaffold_21769000001
Predicted protein (281 aa)
• •     0.504

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
COG0154475 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf 1e-108
pfam01425431 pfam01425, Amidase, Amidase 1e-95
PRK00012459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 5e-93
TIGR00132460 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a 4e-84
PRK09201465 PRK09201, PRK09201, amidase; Provisional 2e-72
PRK07488472 PRK07488, PRK07488, indole acetimide hydrolase; Va 1e-69
TIGR02715452 TIGR02715, amido_AtzE, amidohydrolase, AtzE family 2e-69
PRK06169466 PRK06169, PRK06169, putative amidase; Provisional 1e-60
PRK06102452 PRK06102, PRK06102, hypothetical protein; Provisio 8e-59
PRK05962424 PRK05962, PRK05962, amidase; Validated 7e-58
PRK07056454 PRK07056, PRK07056, amidase; Provisional 1e-51
PRK08137497 PRK08137, PRK08137, amidase; Provisional 2e-50
TIGR02713 561 TIGR02713, allophanate_hyd, allophanate hydrolase 2e-46
PRK08310395 PRK08310, PRK08310, amidase; Provisional 1e-45
PRK07235502 PRK07235, PRK07235, amidase; Provisional 1e-45
PRK07042464 PRK07042, PRK07042, amidase; Provisional 2e-42
PRK07487469 PRK07487, PRK07487, amidase; Provisional 6e-42
PRK12470462 PRK12470, PRK12470, amidase; Provisional 2e-41
PRK06707536 PRK06707, PRK06707, amidase; Provisional 3e-41
PRK08186 600 PRK08186, PRK08186, allophanate hydrolase; Provisi 6e-40
PRK06061483 PRK06061, PRK06061, amidase; Provisional 7e-40
PRK07486484 PRK07486, PRK07486, amidase; Provisional 9e-34
PRK06170490 PRK06170, PRK06170, amidase; Provisional 4e-33
PRK07139439 PRK07139, PRK07139, amidase; Provisional 3e-31
PLN02722422 PLN02722, PLN02722, indole-3-acetamide amidohydrol 1e-29
PRK07869468 PRK07869, PRK07869, amidase; Provisional 5e-29
PRK11910615 PRK11910, PRK11910, amidase; Provisional 2e-26
PRK06828491 PRK06828, PRK06828, amidase; Provisional 3e-26
PRK06529482 PRK06529, PRK06529, amidase; Provisional 9e-23
PRK06565566 PRK06565, PRK06565, amidase; Validated 3e-17
PRK06061483 PRK06061, PRK06061, amidase; Provisional 5e-09
PRK07486484 PRK07486, PRK07486, amidase; Provisional 1e-08
PRK12470462 PRK12470, PRK12470, amidase; Provisional 2e-07
PRK06828491 PRK06828, PRK06828, amidase; Provisional 2e-07
PRK06170490 PRK06170, PRK06170, amidase; Provisional 9e-05
PRK07869468 PRK07869, PRK07869, amidase; Provisional 9e-05
PRK08186 600 PRK08186, PRK08186, allophanate hydrolase; Provisi 4e-04
PRK06565566 PRK06565, PRK06565, amidase; Validated 0.002
PRK07042464 PRK07042, PRK07042, amidase; Provisional 0.004
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  328 bits (844), Expect = e-108
 Identities = 156/445 (35%), Positives = 220/445 (49%), Gaps = 23/445 (5%)

Query: 7   IAAVRESSNPPMKMSFFINYNEEDILK--QATESTLRYKKGEPISVLDGVLIAVKDEIDC 64
           I A+    N       F+  + E  L   +A  +  R   GEP+  L GV IAVKD ID 
Sbjct: 34  IEALNPDLN------AFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVKDNIDT 87

Query: 65  SPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARN 124
           +  PTT G+K L    P   DA  V RLR  GA+++GKTNM E   G+S  N  +G  RN
Sbjct: 88  AGLPTTAGSKALEDYVP-PYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRN 146

Query: 125 PYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGV 184
           P++  ++ GGSS GSAA VAAGL P+ALG D GGS+R+PAA CG+VG KPT+GR+   GV
Sbjct: 147 PWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGV 206

Query: 185 LPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLA 244
           +PL  ++  +G LA TV DA ++   I GP P   P    P V   L      +  +++ 
Sbjct: 207 VPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPPPPPVPPALAG--KDLKGLRIG 264

Query: 245 KYDAWFNDC--SDDIRVCCSRAVDKLCERYGWKVVEVTIPN-IEVMRLAHY---LTIGSE 298
                        D+R     AV  L E  G +VVEV++P   +   LA Y      G  
Sbjct: 265 VPKELGGGGPLDPDVRAAFEAAVKAL-EAAGAEVVEVSLPLLSDDYALAAYYLARFDGER 323

Query: 299 CSTSLSSYLQKINCSDQGWDARVALSVYGSFSSQEYIKAQKIRNHQMQIHR---NVFAKA 355
                +    K      G + +  + +     S  Y  A   R  +  I R    +F + 
Sbjct: 324 YGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFDKLFEEV 383

Query: 356 DVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLP 415
           DV++ PTT   A +I +      +   +Y   L  + +  N  GLPA++VP G+   GLP
Sbjct: 384 DVLLTPTTPTPAPKIGESESDGDDPLEMY--LLDVFTVPANLAGLPAISVPAGFTADGLP 441

Query: 416 IGLQFIGKPWSEPTLMHIAFAMQAL 440
           +GLQ IG  + + TL+ +A A++  
Sbjct: 442 VGLQLIGPAFDDATLLRLAAALEQA 466

Length = 475
>gnl|CDD|216494 pfam01425, Amidase, Amidase Back     alignment and domain information
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit Back     alignment and domain information
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated Back     alignment and domain information
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family Back     alignment and domain information
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional Back     alignment and domain information
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated Back     alignment and domain information
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional Back     alignment and domain information
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase Back     alignment and domain information
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional Back     alignment and domain information
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional Back     alignment and domain information
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated Back     alignment and domain information
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 458
COG0154475 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su 100.0
PRK06169466 putative amidase; Provisional 100.0
PRK09201465 amidase; Provisional 100.0
PRK07042464 amidase; Provisional 100.0
TIGR02715452 amido_AtzE amidohydrolase, AtzE family. Members of 100.0
PRK06102452 hypothetical protein; Provisional 100.0
PRK07486484 amidase; Provisional 100.0
PRK07487469 amidase; Provisional 100.0
PRK05962424 amidase; Validated 100.0
PRK06170490 amidase; Provisional 100.0
PRK06061483 amidase; Provisional 100.0
PRK07056454 amidase; Provisional 100.0
PRK00012459 gatA aspartyl/glutamyl-tRNA amidotransferase subun 100.0
TIGR00132460 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) 100.0
PRK12470462 amidase; Provisional 100.0
PRK07488472 indole acetimide hydrolase; Validated 100.0
PRK08137497 amidase; Provisional 100.0
PRK08186 600 allophanate hydrolase; Provisional 100.0
PRK06529482 amidase; Provisional 100.0
PF01425441 Amidase: Amidase; InterPro: IPR000120 Amidase sign 100.0
PRK07235502 amidase; Provisional 100.0
PRK07869468 amidase; Provisional 100.0
PRK06828491 amidase; Provisional 100.0
TIGR02713 561 allophanate_hyd allophanate hydrolase. Allophanate 100.0
PRK11910615 amidase; Provisional 100.0
PRK06707536 amidase; Provisional 100.0
PRK07139439 amidase; Provisional 100.0
PRK08310395 amidase; Provisional 100.0
PLN02722422 indole-3-acetamide amidohydrolase 100.0
PRK06565566 amidase; Validated 100.0
KOG1211506 consensus Amidases [Translation, ribosomal structu 100.0
KOG1212560 consensus Amidases [Translation, ribosomal structu 100.0
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=7.3e-105  Score=798.30  Aligned_cols=439  Identities=35%  Similarity=0.546  Sum_probs=376.2

Q ss_pred             CHHHHHHHHHHhhCCCCCCceEEEecCHHHHHH--HHHHHHHHHHcCCCCCCCcCcEEEEeeccCCCCccCCCCcccccc
Q 012667            1 MVAERFIAAVRESSNPPMKMSFFINYNEEDILK--QATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK   78 (458)
Q Consensus         1 ~~~~~~~~~i~~~~~~~~~~na~~~~~~~~a~~--~A~~~d~~~~~g~~~~~L~Gipi~vKD~~~v~g~~tt~Gs~~~~~   78 (458)
                      |+++++++||++.|   +.+|+|+.+++|.+++  +|+++|+++++|+..|||+||||+|||||+|+|++||+||+.+.+
T Consensus        25 e~~~~~l~ri~~~~---~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~~gpL~GvPiavKDn~~~~G~~Tt~gS~~l~~  101 (475)
T COG0154          25 ELVEAYLARIEALN---PDLNAFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVKDNIDTAGLPTTAGSKALED  101 (475)
T ss_pred             HHHHHHHHHHHHhC---CCCCEEEEeChhhcchHHHHHHHHHHHhcCCCCCCcCCceEEEeeccccCCCccCccChhhcc
Confidence            68999999999998   8899999999998866  999999999999889999999999999999999999999999988


Q ss_pred             CCCCCCCHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCccceeeccCCC
Q 012667           79 VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGG  158 (458)
Q Consensus        79 ~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaava~g~~~~a~gtD~gG  158 (458)
                      +.+ ++||++|+||+++|||++||||||||+|+.+|.|++||+|+||||++|+|||||||||++||+|++++|+||||||
T Consensus       102 ~~p-~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~~pGGSSgGSAaAVAag~~~~alGSDtGG  180 (475)
T COG0154         102 YVP-PYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGG  180 (475)
T ss_pred             CCC-CcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHhCCcchhcccCCCC
Confidence            755 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccceeecCCCCcccCCCCCCCCCCCceeccCCCCHHHHHHHHHHHcCCCCCCCCCCCCCCCcccccccCCCC
Q 012667          159 SVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSI  238 (458)
Q Consensus       159 SiR~PAa~~Gv~G~kPt~g~~s~~G~~p~~~~ld~~Gpmarsv~Dl~~l~~~l~~~d~~d~~~~~~p~~~~~~~~~~~~~  238 (458)
                      |||+||+||||||||||+||||++|++|+++++|++|||||||+|+++++++|.|+|+.|... ..+ ...+.......+
T Consensus       181 SIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v~~g~D~~d~~~-~~~-~~~~~~~~~~~~  258 (475)
T COG0154         181 SIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPL-PPP-PPVPPALAGKDL  258 (475)
T ss_pred             chhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHHHHHHHHHHcCCCCccccc-ccc-cCccchhhccCC
Confidence            999999999999999999999999999999999999999999999999999999998887411 111 111111124568


Q ss_pred             CCeEEEEeCCCCcC--CCHHHHHHHHHHHHHHHHhcCcEEEEeeCCChHH-HH-HHHH-HHHHHHHHHHHHHH-HHhcCC
Q 012667          239 SAIKLAKYDAWFND--CSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEV-MR-LAHY-LTIGSECSTSLSSY-LQKINC  312 (458)
Q Consensus       239 ~~lrIgv~~~~~~~--~~~~v~~a~~~a~~~L~~~~G~~Vv~~~~p~~~~-~~-~~~~-~~~~~e~~~~~~~~-~~~~~~  312 (458)
                      +++|||++.++...  .++++.++++++++.|+++ |++|+++++|.+.. .. ..++ .....+.+...... +...+.
T Consensus       259 ~~lrigv~~~~~~~~~~~~~v~~~~~~a~~~l~~~-Ga~v~~v~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (475)
T COG0154         259 KGLRIGVPKELGGGGPLDPDVRAAFEAAVKALEAA-GAEVVEVSLPLLSDDYALAAYYLARFDGERYGLRAADLYGKTRA  337 (475)
T ss_pred             CCcEEEEECcccccCCCcHHHHHHHHHHHHHHHHC-CCEEEeccCCchhhhhhhhHHHHHHhhhhhhhhcchhhhhhhhh
Confidence            88999999988653  7889999999999999998 99999999995443 22 2231 12222333222211 222245


Q ss_pred             CCCCHHHHHHHHhccCCCHHHHHHHHHHHHHH---HHHHHHHhccCCEEEccCCCCCcccccchhhhcCcchhhhhhhhh
Q 012667          313 SDQGWDARVALSVYGSFSSQEYIKAQKIRNHQ---MQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALV  389 (458)
Q Consensus       313 ~~~~~~~~~~l~~~~~~s~~~y~~a~~~r~~~---~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~  389 (458)
                      ..++++++.++..+..++..+|.++...|.+.   ++.+.++|+++|+||+||+|.++|++++  ......+......+.
T Consensus       338 ~~~~~~v~~ri~~G~~~~~~~~~~a~~~~~~~~~i~~~~~~~f~~~D~ll~Pt~~~~a~~ig~--~~~~~~~~~~~~~~~  415 (475)
T COG0154         338 EGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFDKLFEEVDVLLTPTTPTPAPKIGE--SESDGDDPLEMYLLD  415 (475)
T ss_pred             hcccHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEeCCCCCCCccccc--ccccccCHHHHhhhc
Confidence            67899999999999999999999998888554   8999999999999999999999999986  111111222333334


Q ss_pred             cccccccccCCCeEEEecccCCCCCceEEEEEcCCCChHHHHHHHHHHHHhccccCCCC
Q 012667          390 RYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKP  448 (458)
Q Consensus       390 ~~t~~~Nl~g~PaisvP~g~~~~glPvGlQlvg~~~~D~~ll~~a~~lE~~~~~~~~~p  448 (458)
                      .||.++|++|+|+||||+|++.+|||+||||+|++|+|..||++|++||++.++..++|
T Consensus       416 ~~t~~~Nl~G~PaisvP~g~~~~GlPvGlqlig~~~~d~~LL~~a~~~E~~~~~~~~~~  474 (475)
T COG0154         416 VFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLLRLAAALEQALGWHRRPP  474 (475)
T ss_pred             cccccccccCCCeEEeccCCCCCCCCeeEEEecCCCCHHHHHHHHHHHHHhhCCCCCCC
Confidence            68999999999999999999888999999999999999999999999999998866555

>PRK06169 putative amidase; Provisional Back     alignment and domain information
>PRK09201 amidase; Provisional Back     alignment and domain information
>PRK07042 amidase; Provisional Back     alignment and domain information
>TIGR02715 amido_AtzE amidohydrolase, AtzE family Back     alignment and domain information
>PRK06102 hypothetical protein; Provisional Back     alignment and domain information
>PRK07486 amidase; Provisional Back     alignment and domain information
>PRK07487 amidase; Provisional Back     alignment and domain information
>PRK05962 amidase; Validated Back     alignment and domain information
>PRK06170 amidase; Provisional Back     alignment and domain information
>PRK06061 amidase; Provisional Back     alignment and domain information
>PRK07056 amidase; Provisional Back     alignment and domain information
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Back     alignment and domain information
>PRK12470 amidase; Provisional Back     alignment and domain information
>PRK07488 indole acetimide hydrolase; Validated Back     alignment and domain information
>PRK08137 amidase; Provisional Back     alignment and domain information
>PRK08186 allophanate hydrolase; Provisional Back     alignment and domain information
>PRK06529 amidase; Provisional Back     alignment and domain information
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence Back     alignment and domain information
>PRK07235 amidase; Provisional Back     alignment and domain information
>PRK07869 amidase; Provisional Back     alignment and domain information
>PRK06828 amidase; Provisional Back     alignment and domain information
>TIGR02713 allophanate_hyd allophanate hydrolase Back     alignment and domain information
>PRK11910 amidase; Provisional Back     alignment and domain information
>PRK06707 amidase; Provisional Back     alignment and domain information
>PRK07139 amidase; Provisional Back     alignment and domain information
>PRK08310 amidase; Provisional Back     alignment and domain information
>PLN02722 indole-3-acetamide amidohydrolase Back     alignment and domain information
>PRK06565 amidase; Validated Back     alignment and domain information
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
2df4_A485 Structure Of Trna-Dependent Amidotransferase Gatcab 3e-43
3h0l_A478 Structure Of Trna-Dependent Amidotransferase Gatcab 5e-39
3al0_A475 Crystal Structure Of The Glutamine Transamidosome F 4e-37
2gi3_A476 Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf 4e-35
3kfu_E471 Crystal Structure Of The Transamidosome Length = 47 2e-34
1m21_A503 Crystal Structure Analysis Of The Peptide Amidase P 1e-27
2dc0_A434 Crystal Structure Of Amidase Length = 434 1e-27
3a1k_A521 Crystal Structure Of Rhodococcus Sp. N771 Amidase L 2e-23
3a1i_A521 Crystal Structure Of Rhodococcus Sp. N-771 Amidase 4e-23
3a2p_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 6e-18
4gyr_A 621 Granulibacter Bethesdensis Allophanate Hydrolase Ap 7e-18
3a2q_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 2e-17
1obk_A414 Crystal Structure Of The R158q Mutant Of Malonamida 6e-17
1ock_A412 The Crystal Structure Of Malonamidase E2 From Brady 7e-17
1obj_A414 Crystal Structure Of The T150a Mutant Of Malonamida 9e-17
1obi_A414 Crystal Structure Of The G130a Mutant Of Malonamida 9e-17
1obl_A414 Crystal Structure Of The S133a Mutant Of Malonamida 1e-16
1o9o_A414 Crystal Structure Of The S131a Mutant Of Malonamida 1e-16
1o9q_A414 Crystal Structure Of The S155c Mutant Of Malonamida 3e-16
1o9n_A414 Crystal Structure Of The K62a Mutant Of Malonamidas 4e-16
1mt5_A537 Crystal Structure Of Fatty Acid Amide Hydrolase Len 5e-07
4hbp_A550 Crystal Structure Of Faah In Complex With Inhibitor 6e-07
2wap_A543 3d-Crystal Structure Of Humanized-Rat Fatty Acid Am 6e-07
2wj1_A573 3d-Crystal Structure Of Humanized-Rat Fatty Acid Am 8e-07
4do3_A571 Structure Of Faah With A Non-steroidal Anti-inflamm 8e-07
2vya_A587 Crystal Structure Of Fatty Acid Amide Hydrolase Con 8e-07
3qk5_A587 Crystal Structure Of Fatty Acid Amide Hydrolase Wit 8e-07
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485 Back     alignment and structure 
Iteration: 1

 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/455 (29%), Positives = 216/455 (47%), Gaps = 43/455 (9%)
Query: 12  ESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTG 71
           E ++P +K   F+  ++E+ +K+A E      K +    L G+ + +KD I  +   TT 
Sbjct: 34  EETDPTIKS--FLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTC 91
Query: 72  GTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKI 131
            +K L    P   ++  + +L    A+L+GK NM E   G S    ++    NP+D   +
Sbjct: 92  ASKMLEGFVPIY-ESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAV 150
Query: 132 TXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTV 191
                          L P++LG D GGS+R PAA CGVVG KPT+GR+   G++    ++
Sbjct: 151 PGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSL 210
Query: 192 GMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLAKYDAWFN 251
             +G L   V+D  +V  AI+G   +   +  +  V F   +    I  +K+A    +  
Sbjct: 211 DQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDF-TSEIGKDIKGLKVALPKEYLG 269
Query: 252 D-CSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSY---- 306
           +  +DD++     AV+ L +  G  V EV++PN +    ++Y+   SE S++LS +    
Sbjct: 270 EGVADDVKEAVQNAVETL-KSLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIR 328
Query: 307 -------------LQKINCSDQGWDARVALSVY-GSFSSQE------YIKAQKIRNHQMQ 346
                        L K++ S +G+   V   ++ G+F+         Y K+QK+R     
Sbjct: 329 YGYHSKEAHSLEELYKMSRS-EGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKN 387
Query: 347 IHRNVFAKADVIVVPTTGVTAYEIK---DDALKTGELDYIYGAALVRYQIAGNFLGLPAV 403
               VF   DV+V PT   TA+ +    DD L       +Y   L+   +  N  GLP +
Sbjct: 388 DFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLT------MYANDLLTTPV--NLAGLPGI 439
Query: 404 TVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQ 438
           +VP G  + G PIGLQFIGKP+ E TL  +A+  +
Sbjct: 440 SVPCG-QSNGRPIGLQFIGKPFDEKTLYRVAYQYE 473
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478 Back     alignment and structure
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475 Back     alignment and structure
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476 Back     alignment and structure
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471 Back     alignment and structure
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503 Back     alignment and structure
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434 Back     alignment and structure
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521 Back     alignment and structure
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521 Back     alignment and structure
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Length = 493 Back     alignment and structure
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621 Back     alignment and structure
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Complexed With Substrate Length = 493 Back     alignment and structure
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412 Back     alignment and structure
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Length = 537 Back     alignment and structure
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor Length = 550 Back     alignment and structure
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide Hydrolase (Faah) Conjugated With The Drug-Like Urea Inhibitor Pf-3845 Length = 543 Back     alignment and structure
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide Hydrolase (Faah) Conjugated With 7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One, An Alpha-Ketooxazole Length = 573 Back     alignment and structure
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory Drug Length = 571 Back     alignment and structure
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated With The Drug-Like Inhibitor Pf-750 Length = 587 Back     alignment and structure
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small Molecule Inhibitor Length = 587 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 1e-97
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 6e-97
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 4e-89
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 1e-86
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 6e-83
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 2e-80
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 2e-78
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 2e-78
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 1e-76
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 2e-64
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 Back     alignment and structure
 Score =  299 bits (768), Expect = 1e-97
 Identities = 115/434 (26%), Positives = 183/434 (42%), Gaps = 54/434 (12%)

Query: 23  FINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPC 82
               +EE   K+A   T   ++G+    L G+ + VKD       PT  GTK      P 
Sbjct: 37  LAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKGMPTRAGTKAPLPPLP- 95

Query: 83  TGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAV 142
             +A  V RLR  GA+L  KTNMHE+  G +G NP  G  RN  DPS+  GGSS GSA  
Sbjct: 96  -EEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVA 154

Query: 143 VAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVE 202
           VA G+   +LG D GGS+R+PA   GVVGFKP++GR+ L G LPL+ +    G L  +V 
Sbjct: 155 VALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVR 214

Query: 203 DALVVYAAINGPLPSQQP----TVSLPKVSFPLLKSATSISAIKLAKYDAWFNDCSDDIR 258
           DA  +   + G     +        +P                     D        ++R
Sbjct: 215 DAHFLTEILAGESIPLEGVQNPVFGVPL--------------------DFLEGRLGVEVR 254

Query: 259 VCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSY------LQKINC 312
              +R ++ L      +V EV++P   V           E  T L  Y       + +  
Sbjct: 255 KAFTRLLEDL-PALRAEVREVSLPLEGV----------YEVYTRLVRYEAARIHEKALKE 303

Query: 313 SDQGWDA----RVALSVYGSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAY 368
             +G+       +   +    + ++Y  A   R              D +++P   + A 
Sbjct: 304 HPEGFSPQVREALLAGLA--LTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAP 361

Query: 369 EI--KDDALKTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWS 426
            +  ++  L++G   +    A +   +  + LG+P + +P      G+P+GLQ +G    
Sbjct: 362 PLGTEEVELESGRKGHRE--AFITLTLPFSLLGVPTLALPFA-KVEGMPVGLQVVGAYGE 418

Query: 427 EPTLMHIAFAMQAL 440
           +  ++ +   ++A 
Sbjct: 419 DGKVLALGGWLEAR 432
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414 Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query458
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 100.0
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 100.0
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 100.0
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 100.0
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 100.0
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 100.0
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 100.0
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 100.0
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Back     alignment and structure
Probab=100.00  E-value=7.3e-106  Score=816.82  Aligned_cols=436  Identities=31%  Similarity=0.455  Sum_probs=378.2

Q ss_pred             CHHHHHHHHHHhhCCCCCCceEEEecCHHHHHHHHHHHHHHH-HcCCCCCCCcCcEEEEeeccCCCCccCCCCccccccC
Q 012667            1 MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRY-KKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKV   79 (458)
Q Consensus         1 ~~~~~~~~~i~~~~~~~~~~na~~~~~~~~a~~~A~~~d~~~-~~g~~~~~L~Gipi~vKD~~~v~g~~tt~Gs~~~~~~   79 (458)
                      ||+++|++||+++|   +.+|||+++++|+|+++|+++|+++ ++|++ ||||||||+|||||+|+|++||+||..+.++
T Consensus        24 el~~a~l~ri~~~~---~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~   99 (485)
T 3ip4_A           24 DVVKDIYDAIEETD---PTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKDNIITNGLETTCASKMLEGF   99 (485)
T ss_dssp             HHHHHHHHHHHHHH---HHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEETTBCBTTBCCCTTSGGGTTC
T ss_pred             HHHHHHHHHHHHhC---CCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEcCcccCCCccCCCChhhcCC
Confidence            68999999999998   8999999999999999999999999 89998 9999999999999999999999999988765


Q ss_pred             CCCCCCHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCccceeeccCCCc
Q 012667           80 RPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGS  159 (458)
Q Consensus        80 ~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaava~g~~~~a~gtD~gGS  159 (458)
                      . +++|+++|++||++|||++||||||||+++.+|.|++||+|+||||++|+|||||||||++||+|++++|+|||||||
T Consensus       100 ~-~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGS  178 (485)
T 3ip4_A          100 V-PIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGS  178 (485)
T ss_dssp             C-CSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEECSSST
T ss_pred             C-CCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHHHHHhhcCCCceeeeccCCcc
Confidence            4 579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccceeecCCCCcccCCCCCCCCCCCceeccCCCCHHHHHHHHHHHcCCCCCCCCCCCCCCCcccccccCCCCC
Q 012667          160 VRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSIS  239 (458)
Q Consensus       160 iR~PAa~~Gv~G~kPt~g~~s~~G~~p~~~~ld~~Gpmarsv~Dl~~l~~~l~~~d~~d~~~~~~p~~~~~~~~~~~~~~  239 (458)
                      ||+||+||||||||||+||+|+.|++|+++++|++|||||||+|+++++++|.++|+.|+.+...|..++... ....++
T Consensus       179 IRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~~~~~~~~~~~~~~-~~~~~~  257 (485)
T 3ip4_A          179 IRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDFTSE-IGKDIK  257 (485)
T ss_dssp             THHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCCCCCCCCSTT-TTCCCT
T ss_pred             hhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCcccccccccCccchhhh-hccCcc
Confidence            9999999999999999999999999999999999999999999999999999999988876554433222111 123578


Q ss_pred             CeEEEEeCCCCc-CCCHHHHHHHHHHHHHHHHhcCcEEEEeeCCChHHHHHHHHHHHHHHHHHHHHHH------------
Q 012667          240 AIKLAKYDAWFN-DCSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSY------------  306 (458)
Q Consensus       240 ~lrIgv~~~~~~-~~~~~v~~a~~~a~~~L~~~~G~~Vv~~~~p~~~~~~~~~~~~~~~e~~~~~~~~------------  306 (458)
                      ++||||+.+++. .++++++++++++++.|+++ ||+|+++++|.++.....+..++..|+..++.++            
T Consensus       258 ~lrigv~~~~~~~~~~~~v~~a~~~a~~~L~~~-G~~v~~~~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~  336 (485)
T 3ip4_A          258 GLKVALPKEYLGEGVADDVKEAVQNAVETLKSL-GAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEA  336 (485)
T ss_dssp             TCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHT-TCEEEEECCTTGGGHHHHHHHHHHHHHHHHTTTCSSSSSSCCCTTC
T ss_pred             CcEEEEECCcccCCCCHHHHHHHHHHHHHHHHC-CCEEEEeCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccc
Confidence            999999988664 48999999999999999998 9999999999877777777777888887654322            


Q ss_pred             ------HHhcCCCCCCHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHHHHhccCCEEEccCCCCCcccccchhh
Q 012667          307 ------LQKINCSDQGWDARVALSVYG-----SFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDAL  375 (458)
Q Consensus       307 ------~~~~~~~~~~~~~~~~l~~~~-----~~s~~~y~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~  375 (458)
                            +...+.+.+.++++.++..+.     .....+|.++++.|+++++.+.++|+++|+||+||++.+||+++....
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~  416 (485)
T 3ip4_A          337 HSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEID  416 (485)
T ss_dssp             CSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTT
T ss_pred             ccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccC
Confidence                  111112346777776665443     223346889999999999999999999999999999999999875321


Q ss_pred             hcCcchhhhhhhhhcccccccccCCCeEEEecccCCCCCceEEEEEcCCCChHHHHHHHHHHHHhccccCCCCc
Q 012667          376 KTGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPK  449 (458)
Q Consensus       376 ~~~~~~~~~~~~~~~~t~~~Nl~g~PaisvP~g~~~~glPvGlQlvg~~~~D~~ll~~a~~lE~~~~~~~~~p~  449 (458)
                         +  .........||.+||++|+|+++||+|++ +|||+||||||++|+|+.||++|++||+.++|..++|+
T Consensus       417 ---~--~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGlqlvg~~~~d~~lL~~A~~lE~~~~~~~~~p~  484 (485)
T 3ip4_A          417 ---D--PLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGKPFDEKTLYRVAYQYETQYNLHDVYEK  484 (485)
T ss_dssp             ---C--HHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHHHHHHHHSCCTTTGGG
T ss_pred             ---C--hHHHhhhhhhhhhhHhhCCCeEEEeCCcC-CCCCEeEEEEcCCCCHHHHHHHHHHHHHhcCcccCCCC
Confidence               1  11111122489999999999999999997 89999999999999999999999999999999888775
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Back     alignment and structure
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 458
d2f2aa1485 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf 2e-85
d2gi3a1475 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf 2e-70
d1m22a_490 c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon 5e-49
d1mt5a_537 c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid 3e-38
d1ocka_412 c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap 9e-37
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  268 bits (685), Expect = 2e-85
 Identities = 137/462 (29%), Positives = 216/462 (46%), Gaps = 36/462 (7%)

Query: 2   VAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDE 61
           V +    A+ E ++P   +  F+  ++E+ +K+A E      K +    L G+ + +KD 
Sbjct: 25  VVKDIYDAI-EETDP--TIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDN 81

Query: 62  IDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGV 121
           I  +   TT  +K L        ++  + +L    A+L+GK NM E   G S    ++  
Sbjct: 82  IITNGLETTCASKMLEG-FVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKK 140

Query: 122 ARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPL 181
             NP+D   + GGSS GSAA VAAGL P++LG D GGS+R PAA CGVVG KPT+GR+  
Sbjct: 141 TVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSR 200

Query: 182 SGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAI 241
            G++    ++  +G L   V+D  +V  AI+G   +   +  +  V F        I  +
Sbjct: 201 FGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDFTSEIGK-DIKGL 259

Query: 242 KLAKYDAWFND-CSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECS 300
           K+A    +  +  +DD++     AV+ L +  G  V EV++PN +    ++Y+   SE S
Sbjct: 260 KVALPKEYLGEGVADDVKEAVQNAVETL-KSLGAVVEEVSLPNTKFGIPSYYVIASSEAS 318

Query: 301 TSLSSY------------------LQKINCSDQGWDARVALSVYGSFSSQEYIKA----- 337
           ++LS +                   +       G + +  + +     S  Y  A     
Sbjct: 319 SNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKS 378

Query: 338 QKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALKTGELDYIYGAALVRYQIAGNF 397
           QK+R         VF   DV+V PT   TA+ + ++       D +   A        N 
Sbjct: 379 QKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEI-----DDPLTMYANDLLTTPVNL 433

Query: 398 LGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQA 439
            GLP ++VP G    G PIGLQFIGKP+ E TL  +A+  + 
Sbjct: 434 AGLPGISVPCGQSN-GRPIGLQFIGKPFDEKTLYRVAYQYET 474
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537 Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query458
d2f2aa1485 Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta 100.0
d2gi3a1475 Glutamyl-tRNA(Gln) amidotransferase subunit A {The 100.0
d1m22a_490 Peptide amidase Pam {Stenotrophomonas maltophilia 100.0
d1mt5a_537 Fatty acid amide hydrolase (oleamide hydrolase) {R 100.0
d1ocka_412 Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 100.0
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.1e-100  Score=784.98  Aligned_cols=438  Identities=31%  Similarity=0.455  Sum_probs=381.0

Q ss_pred             CHHHHHHHHHHhhCCCCCCceEEEecCHHHHHHHHHHHHHHHHcCCCCCCCcCcEEEEeeccCCCCccCCCCccccccCC
Q 012667            1 MVAERFIAAVRESSNPPMKMSFFINYNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVR   80 (458)
Q Consensus         1 ~~~~~~~~~i~~~~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~g~~~~~L~Gipi~vKD~~~v~g~~tt~Gs~~~~~~~   80 (458)
                      ||+++|++||+++|   +.+|||+++++|+|+++|+++|+++++|+.+||||||||+|||+|+|+|++||+||..+.+..
T Consensus        24 e~~~~~l~ri~~~~---~~lna~~~~~~~~a~~~A~~~d~~~~~~~~~gpL~GiPi~vKD~~~v~g~~tt~Gs~~~~~~~  100 (485)
T d2f2aa1          24 DVVKDIYDAIEETD---PTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFV  100 (485)
T ss_dssp             HHHHHHHHHHHHHH---HHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBCBTTBCCCTTCGGGTTCC
T ss_pred             HHHHHHHHHHHHhC---CCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCcCeEEEEcccccCCCccCCcChhhccCC
Confidence            68999999999998   999999999999999999999999999999999999999999999999999999999887664


Q ss_pred             CCCCCHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhCCccceeeccCCCcc
Q 012667           81 PCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITGGSSSGSAAVVAAGLCPVALGVDGGGSV  160 (458)
Q Consensus        81 ~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaava~g~~~~a~gtD~gGSi  160 (458)
                       +.+|+++|++|+++|||++|||||+||+++.++.|.+||+|+||||++|+|||||||||++||+|++++|+||||||||
T Consensus       101 -~~~d~~~v~~l~~~Gai~~gkt~~~e~~~~~~~~n~~~g~~~NP~~~~~~~GGSSgGsaaavA~g~~~~alGtDt~GSi  179 (485)
T d2f2aa1         101 -PIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSI  179 (485)
T ss_dssp             -CSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSCEEEECSSSTT
T ss_pred             -ccccccccccccccccccccccchhhhcccccccCccccCcCCCCCcccccCCccccchhhHHhccCceEEecCCCchh
Confidence             4799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccceeecCCCCcccCCCCCCCCCCCceeccCCCCHHHHHHHHHHHcCCCCCCCCCCCCCCCcccccccCCCCCC
Q 012667          161 RMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISA  240 (458)
Q Consensus       161 R~PAa~~Gv~G~kPt~g~~s~~G~~p~~~~ld~~Gpmarsv~Dl~~l~~~l~~~d~~d~~~~~~p~~~~~~~~~~~~~~~  240 (458)
                      |+||+||||||||||+|++|+.|++|+++++|++|||||||+|+++++++|.++++.|+.+...+..++.... ...+++
T Consensus       180 R~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~~~~d~~~~~~~~~~~~~~~-~~~~~~  258 (485)
T d2f2aa1         180 RQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDFTSEI-GKDIKG  258 (485)
T ss_dssp             HHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCBTTBTTSCCCCCCCCSTTT-TCCCTT
T ss_pred             hhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHHHHHHHhhcccccccccccCCCCccchhhhh-cCCccC
Confidence            9999999999999999999999999999999999999999999999999999999888766554443332221 345889


Q ss_pred             eEEEEeCCCCcC-CCHHHHHHHHHHHHHHHHhcCcEEEEeeCCChHHHHHHHHHHHHHHHHHHHHHH-------------
Q 012667          241 IKLAKYDAWFND-CSDDIRVCCSRAVDKLCERYGWKVVEVTIPNIEVMRLAHYLTIGSECSTSLSSY-------------  306 (458)
Q Consensus       241 lrIgv~~~~~~~-~~~~v~~a~~~a~~~L~~~~G~~Vv~~~~p~~~~~~~~~~~~~~~e~~~~~~~~-------------  306 (458)
                      +|||++.+++.. ++++++++++++++.|+++ |++|+++++|........+..+...|+..++..+             
T Consensus       259 lrig~~~~~~~~~~~~~i~~a~~~a~~~L~~~-G~~v~ev~lp~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~  337 (485)
T d2f2aa1         259 LKVALPKEYLGEGVADDVKEAVQNAVETLKSL-GAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAH  337 (485)
T ss_dssp             CEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHT-TCEEEEECCTTGGGHHHHHHHHHHHHHHHHTTTCSSSSSSCCCSSCC
T ss_pred             CEEEEEcccccCcCCHHHHHHHHHHHHHHHHC-CCEEEEeCCCchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccc
Confidence            999999887654 8999999999999999998 9999999999876666666666667776554322             


Q ss_pred             -----HHhcCCCCCCHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHHHhccCCEEEccCCCCCcccccchhhh
Q 012667          307 -----LQKINCSDQGWDARVALSVY-----GSFSSQEYIKAQKIRNHQMQIHRNVFAKADVIVVPTTGVTAYEIKDDALK  376 (458)
Q Consensus       307 -----~~~~~~~~~~~~~~~~l~~~-----~~~s~~~y~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~  376 (458)
                           ....+.+.+.++++.++..+     ..+....|.++++.++.+.+.|+++|+++|+||+||++.++|++++....
T Consensus       338 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~  417 (485)
T d2f2aa1         338 SLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDD  417 (485)
T ss_dssp             SHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBTTTSTTC
T ss_pred             CHHHHHHHhhhhhcCHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHccCCEEEeCCCCCCCCCcccccCC
Confidence                 11111233566666654433     55666778888999999999999999999999999999999998753211


Q ss_pred             cCcchhhhhhhhhcccccccccCCCeEEEecccCCCCCceEEEEEcCCCChHHHHHHHHHHHHhccccCCCCch
Q 012667          377 TGELDYIYGAALVRYQIAGNFLGLPAVTVPVGYDTAGLPIGLQFIGKPWSEPTLMHIAFAMQALCISEFRKPKV  450 (458)
Q Consensus       377 ~~~~~~~~~~~~~~~t~~~Nl~g~PaisvP~g~~~~glPvGlQlvg~~~~D~~ll~~a~~lE~~~~~~~~~p~~  450 (458)
                           .........||.+||++|+|+++||+|+. +|||+||||||++|+|+.||++|++||+++.|+.+.|++
T Consensus       418 -----~~~~~~~~~~t~~~Nl~G~PaisvP~G~~-dGlPvGlQiig~~~~D~~LL~~A~~~E~~~~~~~~~p~l  485 (485)
T d2f2aa1         418 -----PLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGLQFIGKPFDEKTLYRVAYQYETQYNLHDVYEKL  485 (485)
T ss_dssp             -----HHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTTCHHHHHHHHHHHHHHSCCTTTGGGC
T ss_pred             -----HHHHhhhhHHHHHHHHHCCCeEEEECCCC-CCCCEeEEEECCCCCHHHHHHHHHHHHhhCCCCcCCCCC
Confidence                 11112223489999999999999999984 899999999999999999999999999999998888864
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure