Citrus Sinensis ID: 013050

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
Protein Sequence
MCKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILAT
Secondary Structure (PSIPRED)
cccccEEEEccEEEEEccccccccccccccEEEccccEEcccccccccccccccccccccHHHHHHHHHHcccEEEEccccccccccccHHHHHHHHHHHccccEEEEEEEEEEEccccccHHHHHHHHHcccEEEEEccccccccccccccHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccHHHHHHHHHHHHHccccEEEEcccccccccccccccccccEEEccccccHHHHHHHHHHHHcccccEEccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcccEEEEcccccccccccccccccccEEEEEEEEEEEccEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccEEEEEcccccccccccccEEEEcccEEEEcccccccccccccccccHccHccHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHccccEEEEEEEEEEcccccHHHHHHHHHHHccccEEEEEEEEccccccEEEcHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccHHHHHHHHHHHHHcccEEEEEccccEEEcccHHcccccccEEccccccccccHHHHHHHHHcccEEEEEcccccccHHHHHcccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHccccccEEEEcccccEEEEccccEEEEccccccHcccccccccccEEEEcEEEEEEEccEEEEEcccEccccccEEEccc
Coil and Loop (DISEMBL)
MCKRAVeikegniisivseedwprnsktgqvvdygeavimpglidvhahlddpgrtewegfpsgtkaaaaggittlidmplnsdpstisteTLKLKVDAAEKRIYVdvgfwgglvpenaYNASALEALLNAGVLglksfmcpsgindfpmtnasHIKEGLSVLARYKRPLLVHaemekgserhvkleddtldtrsystylktrppsweEAAIRELLTVAKdtrtdgpaegaHLHIVHLSDASSSLDLLMEAktngdsitvetcphylafsaeeipdgdtrfkcappirdAANKEKLWEALMDGHIdmlssdhsptvpelklldegnflkawggisslqfvLPVTwsygrkygvTLEQLASWwserpaklagqVSKGAIaignhadlvvwepeaefeldndhpvhmkhpsisaylgrrlSGKVLATISrgnlvykegnhapaacgspilat
Flexible Loop (DISEMBL)
mckraveikegniisivseedwprnsKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHaemekgserhvkleddtldtrsystylktrppsweeaAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSaeeipdgdtRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNlvykegnhapaacgspilat
Low Complexity Region (SEG)
MCKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSgtkaaaaggittLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHlsdasssldllMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILAT
Disordered region (IsUnstruct)
*********EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL******ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA***********************TYL******WEEAAIRELLTVAK*********GAHLHIVHLSDA**SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML******TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG**************
Disordered Region (DISOPRED)
MCKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH**********RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA*
Disordered Region (DISEMBL)
MCKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILAT
Disordered Region (DISPRO)
MCKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILAT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	450	2.2.26 [Sep-21-2011]
Q54SV3	649	Probable allantoinase 1 O	yes	no	0.866	0.600	0.419	6e-89
Q82LL4	445	Allantoinase OS=Streptomy	yes	no	0.904	0.914	0.423	3e-86
Q9RKU5	445	Allantoinase OS=Streptomy	yes	no	0.848	0.858	0.440	2e-85
P32375	460	Allantoinase OS=Saccharom	yes	no	0.853	0.834	0.420	1e-84
Q55C91	510	Probable allantoinase 2 O	no	no	0.871	0.768	0.419	2e-82
P40757	484	Allantoinase, mitochondri	N/A	no	0.771	0.716	0.435	9e-75
Q9RV76	448	Allantoinase OS=Deinococc	yes	no	0.904	0.908	0.369	3e-71
B7N966	453	Allantoinase OS=Escherich	yes	no	0.86	0.854	0.362	3e-70
Q9KAH8	438	Allantoinase OS=Bacillus	yes	no	0.911	0.936	0.377	4e-70
Q57S43	453	Allantoinase OS=Salmonell	yes	no	0.891	0.885	0.358	4e-70

>sp|Q54SV3|ALN1_DICDI Probable allantoinase 1 OS=Dictyostelium discoideum GN=allB1 PE=3 SV=1

 Score =  328 bits (840), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 173/412 (41%), Positives = 259/412 (62%), Gaps = 22/412 (5%)

Query: 38  VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 97
           VIM GL+D H H+++PGRTEWEGF S T AAA+GG+TT+IDMPLNS P T + E L+ K+
Sbjct: 57  VIMGGLVDSHVHINEPGRTEWEGFLSATSAAASGGVTTIIDMPLNSSPVTTTFENLQTKI 116

Query: 98  DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 157
           ++   ++ VDVG  GG++P N+   S +  +L  GV+G KSF+  SGI++FP      I+
Sbjct: 117 ESMPGKLRVDVGLLGGIIPGNSSEISRM--VLEGGVVGFKSFLVHSGIDEFPHVKEDDIQ 174

Query: 158 EGLSVLARYKRP-------LLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEE 209
           E ++V+ + K         ++ HAE+E+   E   +L+ +  D + Y T+LK+RP   E 
Sbjct: 175 EAMNVMKKLKDEQGGRDVVMMFHAEIEEPIKEATERLQRENADPKLYDTFLKSRPRVSEN 234

Query: 210 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTN-GDSITVETCPHYLA 268
            AI +++ + K             HIVHLS +S +++ + EA  N G  IT ET  HYL 
Sbjct: 235 IAIDKVIELTKKNMIKT-------HIVHLS-SSDAIEAIHEAVHNDGVPITAETTYHYLY 286

Query: 269 FSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFL 328
           F +E++P G+T +KC PP+R++ NK+ LW+A+ +G I+++ SDHSP   +LKL+++G+F+
Sbjct: 287 FESEQVPYGNTLYKCCPPVRESENKDLLWKAVTNGTINIIVSDHSPCTLDLKLIEQGDFM 346

Query: 329 KAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLV 387
           KAWGGISSLQ  LP+ W+   K GV L +L+ + S+ P++L G    KG+I IG  AD V
Sbjct: 347 KAWGGISSLQLGLPIIWTEASKRGVPLAKLSEYMSDAPSRLVGLNDRKGSIKIGRDADFV 406

Query: 388 VWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 439
           +W+PE  F +  D  + M     S Y G +L G V  TI RGN ++ +G+  
Sbjct: 407 IWDPEESFTV--DQGLLMVKNKNSPYHGEKLLGVVHHTILRGNKIFSKGDQT 456

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 5EC: .EC: 2EC: .EC: 5

>sp|Q82LL4|ALLB_STRAW Allantoinase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) GN=allB PE=3 SV=1

 Score =  319 bits (817), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 184/434 (42%), Positives = 262/434 (60%), Gaps = 27/434 (6%)

Query: 5   AVEIKEGNIISIVSEE-DWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 63
           AV +  G I +++  + + P  ++   + D G+ V++PGL+D H H++DPGRT WEGF +
Sbjct: 23  AVAVAAGKITAVLPHDAEVPAGAR---LEDLGDDVLLPGLVDTHVHVNDPGRTHWEGFWT 79

Query: 64  GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
            T+AAAAGGITTL+DMPLNS P T +   L+ K D A  + ++DVGFWGG +P+N  +  
Sbjct: 80  ATRAAAAGGITTLVDMPLNSLPPTTTVGNLRTKRDVAADKAHIDVGFWGGALPDNVKD-- 137

Query: 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 183
            L  L +AGV G K+F+ PSG+++FP  +   +   ++ +A +   L+VHAE       H
Sbjct: 138 -LRPLHDAGVFGFKAFLSPSGVDEFPELDQERLARSMAEIAGFGGLLIVHAE----DPHH 192

Query: 184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 243
           +         R Y+ +L +RP   E+ AI  LL  AK          A +H++HLS +S 
Sbjct: 193 LAAAPQRGGPR-YTDFLASRPRDAEDTAIANLLAQAKRL-------NARVHVLHLS-SSD 243

Query: 244 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 303
           +L L+  AK  G  +TVETCPHYL  +AEE+PDG + FKC PPIR+AAN++ LW+AL DG
Sbjct: 244 ALPLIAGAKAEGVRVTVETCPHYLTLTAEEVPDGASEFKCCPPIREAANQDLLWQALADG 303

Query: 304 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWS 363
            ID + +DHSP+  +LK  D   F  AWGGIS LQ  LP  W+  R+ G +LE +  W S
Sbjct: 304 TIDCVVTDHSPSTADLKTDD---FATAWGGISGLQLSLPAIWTEARRRGHSLEDVVRWMS 360

Query: 364 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPS-ISAYLGRRLSGKV 422
            R A+L G   KGAI  G  AD  V  P+  F +D   P  ++H + ++AY G+ LSG V
Sbjct: 361 ARTARLVGLAQKGAIEAGRDADFAVLAPDETFTVD---PAALQHRNRVTAYAGKTLSGVV 417

Query: 423 LATISRGNLVYKEG 436
            +T  RG  +  +G
Sbjct: 418 KSTWLRGERIMADG 431

Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring.

Streptomyces avermitilis (taxid: 33903)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 5

>sp|Q9RKU5|ALLB_STRCO Allantoinase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=allB PE=3 SV=1

 Score =  316 bits (810), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 179/406 (44%), Positives = 250/406 (61%), Gaps = 24/406 (5%)

Query: 33  DYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET 92
           D G+ V++PGL+D H H++DPGRTEWEGF + T+AAAAGGITTL+DMPLNS P T + + 
Sbjct: 49  DVGDHVVLPGLVDTHVHVNDPGRTEWEGFWTATRAAAAGGITTLVDMPLNSIPPTTTVDN 108

Query: 93  LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTN 152
           L+ K + A  + ++DVGFWGG +P+N  +   L  L  AGV G K+F+ PSG+++FP  +
Sbjct: 109 LRTKREVAADKAHIDVGFWGGALPDNVKD---LRPLHEAGVFGFKAFLSPSGVDEFPHLD 165

Query: 153 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 212
              +   L+ +A +   L+VHAE     + H            Y+ +L +RP   E+ AI
Sbjct: 166 QEQLARSLAEIAAFDGLLIVHAE-----DPHHLAAAPQQGGPKYTHFLASRPRDAEDTAI 220

Query: 213 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 272
             LL  AK          A +H++HLS +S +L L+ EA+ +G  +TVETCPHYL  +AE
Sbjct: 221 ATLLAQAKRF-------NARVHVLHLS-SSDALPLIAEARADGVRVTVETCPHYLTLTAE 272

Query: 273 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWG 332
           E+PDG + FKC PPIR+AAN++ LW+AL DG ID + +DHSP+  +LK  D   F  AWG
Sbjct: 273 EVPDGASEFKCCPPIREAANQDLLWQALADGTIDCVVTDHSPSTADLKTDD---FATAWG 329

Query: 333 GISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEP 391
           GI+ LQ  LP  W+  R  G+ LE +  W SER A L G    KGAIA G+ AD  V  P
Sbjct: 330 GIAGLQLSLPAMWTAARGRGLGLEDVVRWMSERTAALVGLDARKGAIAPGHDADFAVLAP 389

Query: 392 EAEFELDNDHPVHMKHPS-ISAYLGRRLSGKVLATISRGNLVYKEG 436
           +  F +D   P  ++H + ++AY G+ L G V +T  RG  +  +G
Sbjct: 390 DETFTVD---PAALQHRNRVTAYAGKTLYGVVKSTWLRGERIVADG 432

Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring.

Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 5

>sp|P32375|ALN_YEAST Allantoinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DAL1 PE=3 SV=2

 Score =  314 bits (804), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 169/402 (42%), Positives = 249/402 (61%), Gaps = 18/402 (4%)

Query: 37  AVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLK 96
             I+PGL+D H HL++PGRT WEGF +GT+AA +GG+TT++DMPLN+ P T + E  ++K
Sbjct: 60  CTILPGLVDSHVHLNEPGRTSWEGFETGTQAAISGGVTTVVDMPLNAIPPTTNVENFRIK 119

Query: 97  VDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHI 156
           ++AAE +++ DVGFWGGLVP   +N   L  L+ AGV G K F+  SG+ +FP     +I
Sbjct: 120 LEAAEGQMWCDVGFWGGLVP---HNLPDLIPLVKAGVRGFKGFLLDSGVEEFPPIGKEYI 176

Query: 157 KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 216
           +E L VLA     ++ HAE+ K  E   + E      R YS++L +RP S+E  AI  +L
Sbjct: 177 EEALKVLAEEDTMMMFHAELPKAHEDQQQPEQ---SHREYSSFLSSRPDSFEIDAINLIL 233

Query: 217 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 276
              +    +GP     +HIVHL+ +  ++ L+ +A+ +G  +T ETC HYL  +AE+IPD
Sbjct: 234 ECLR--ARNGPV--PPVHIVHLA-SMKAIPLIRKARASGLPVTTETCFHYLCIAAEQIPD 288

Query: 277 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 336
           G T FKC PPIR  +N++ LW+AL +G I  + SDHSP  PELK L +G+F  +WGGI+S
Sbjct: 289 GATYFKCCPPIRSESNRQGLWDALREGVIGSVVSDHSPCTPELKNLQKGDFFDSWGGIAS 348

Query: 337 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEF 395
           +   LP+ ++     G +L  + +W  +  +   G    KG IA G  ADLVV++  ++ 
Sbjct: 349 VGLGLPLMFT----QGCSLVDIVTWCCKNTSHQVGLSHQKGTIAPGYDADLVVFDTASKH 404

Query: 396 ELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 437
           ++ N   V+ K+  ++AY G  + G VL TI RG +VY   N
Sbjct: 405 KISNSS-VYFKN-KLTAYNGMTVKGTVLKTILRGQVVYTNAN 444

Utilization of purines as secondary nitrogen sources, when primary sources are limiting.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 5

>sp|Q55C91|ALN2_DICDI Probable allantoinase 2 OS=Dictyostelium discoideum GN=allB2 PE=3 SV=1

 Score =  306 bits (783), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 175/417 (41%), Positives = 258/417 (61%), Gaps = 25/417 (5%)

Query: 36  EAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKL 95
           + +IM GL+D H H+++PGRTEWEGF S T AAAAGG+TT++DMPLNS P T S + L  
Sbjct: 86  DFIIMGGLVDSHVHVNEPGRTEWEGFESATSAAAAGGVTTIVDMPLNSSPVTTSFKNLLD 145

Query: 96  KVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASH 155
           K+++ + ++ VDVG  GG+VP N+     +  +L  GVLG KSF+ PSGI++FP  N + 
Sbjct: 146 KIESMKGKLRVDVGLLGGIVPGNSKEIKKM--VLQGGVLGFKSFLLPSGIDEFPPVNEND 203

Query: 156 IKEGLSVLARYKRP-------LLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSW 207
           I+E ++ +   K         ++ HAE+E+   E  V+L+++  D + Y TYL +RP   
Sbjct: 204 IQEAMNEMKLLKCQYNNSDVIMMFHAEVEEPIKEATVRLKNENADPKLYKTYLDSRPKIS 263

Query: 208 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 267
           E  AI +L+ + +  +          HIVHLS +S S++ + EA   G  I+ ET  +YL
Sbjct: 264 ENQAISKLIDITRQNQI------VSTHIVHLS-SSESIEQIREAMDQGVPISAETTYNYL 316

Query: 268 AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDE--- 324
             ++E +P G+T FK APP+R+  NKE LW A+++G I ++ SDHSP    LK L E   
Sbjct: 317 HLTSESVPYGNTLFKSAPPVREHENKELLWNAIINGTIKLIVSDHSPCTINLKQLKEDNQ 376

Query: 325 --GNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIG 381
             G+FLKAWGGISSL+  LP+ W+  +  G+ + QL+ W S  P+KL G    KG+I IG
Sbjct: 377 SIGDFLKAWGGISSLELGLPIIWTECKNRGIPITQLSEWLSNGPSKLVGLNDRKGSIEIG 436

Query: 382 NHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 438
             AD V++ P   F + N+  + +K+   SAY G +L G V  TI RGN ++K+G++
Sbjct: 437 RDADFVIFNPNESF-IVNEKKLFLKN-KFSAYNGEKLFGVVYETILRGNSIFKKGDN 491

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 5

>sp|P40757|ALN_LITCT Allantoinase, mitochondrial OS=Lithobates catesbeiana GN=ALN PE=1 SV=1

 Score =  281 bits (718), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 160/367 (43%), Positives = 226/367 (61%), Gaps = 20/367 (5%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
           + I +G I S+++   W ++  +G +++D G+ V+M G+ID H H+++PGRT+WEG+ + 
Sbjct: 37  IIISDGKISSVLA---WGKHVTSGAKLLDVGDLVVMAGIIDPHVHVNEPGRTDWEGYRTA 93

Query: 65  TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
           T AAAAGGIT ++DMPLNS P T S      K+ AA+++ YVDV FWGG++P+N      
Sbjct: 94  TLAAAAGGITAIVDMPLNSLPPTTSVTNFHTKLQAAKRQCYVDVAFWGGVIPDNQVE--- 150

Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 184
           L  +L AGV G K F+  SG+ +FP  + + +   +S L      LL HAE+E       
Sbjct: 151 LIPMLQAGVAGFKCFLINSGVPEFPHVSVTDLHTAMSELQGTNSVLLFHAELEIA----- 205

Query: 185 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 244
           K   +  D+  Y T+L +RP   E AA++ +  + +  +          HIVHLS A S 
Sbjct: 206 KPAPEIGDSTLYQTFLDSRPDDMEIAAVQLVADLCQQYK-------VRCHIVHLSSAQS- 257

Query: 245 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
           L ++ +AK  G  +TVET  HYL+ S+E IP G T FKC PP+R   NKE LW AL+ GH
Sbjct: 258 LTIIRKAKEAGAPLTVETTHHYLSLSSEHIPPGATYFKCCPPVRGHRNKEALWNALLQGH 317

Query: 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSE 364
           IDM+ SDHSP  P+LKLL EG+++KAWGGISSLQF LP+ W+  R  G +L  ++   S 
Sbjct: 318 IDMVVSDHSPCTPDLKLLKEGDYMKAWGGISSLQFGLPLFWTSARTRGFSLTDVSQLLSS 377

Query: 365 RPAKLAG 371
             AKL G
Sbjct: 378 NTAKLCG 384

Lithobates catesbeiana (taxid: 8400)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 5

>sp|Q9RV76|ALLB_DEIRA Allantoinase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=allB PE=3 SV=1

 Score =  269 bits (688), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 159/430 (36%), Positives = 231/430 (53%), Gaps = 23/430 (5%)

Query: 8   IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKA 67
           I  G I  +  E   P      Q +D     + PG++D H HL++PGRT WEGF +GT+A
Sbjct: 25  IVGGQIAELTDEIATP----AAQTLDVSGLHVFPGVLDDHVHLNEPGRTHWEGFETGTQA 80

Query: 68  AAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEA 127
            AAGG T+ +DMPLNS P  ++ E  + K    E++  +D G WGGL P    N   L+ 
Sbjct: 81  LAAGGATSFLDMPLNSSPPVLTRERFEDKARLGEEKSLIDFGLWGGLTP---LNLDQLDD 137

Query: 128 LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLE 187
           L   GV+GLK+FM  SG+++FP  +   + EG+    R+   +  HAE  + + R  +  
Sbjct: 138 LAECGVIGLKAFMSHSGLDEFPAADDLTLYEGMRTAKRHGLVVATHAESNEFTRRLTETA 197

Query: 188 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDL 247
                      YL++RP   E  A++  L  A+DT       GA LH+VH+S + +++ L
Sbjct: 198 -RAQGKSGVRDYLESRPVVTELEAVQRALLFAQDT-------GAALHLVHVS-SGAAVAL 248

Query: 248 LMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDM 307
             E K  G  +T+ETCPHYL F+ E++       KCAPP+RD A +E+LW  L+ GHID 
Sbjct: 249 AYEGKQKGIDVTIETCPHYLHFTGEDVERVGAALKCAPPLRDPAVQEELWRELLAGHIDT 308

Query: 308 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERP 366
           + SDHSP  P++K  +  +F   WGGIS  Q  L V    G  + G+ LE +A+  +  P
Sbjct: 309 VGSDHSPAPPDMKTSE--DFFSLWGGISGAQSTLNVMLEDGYAQRGLPLEIIAALLALNP 366

Query: 367 AKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 426
           A+  G   KG +A+G  AD  +     +F LD  +    ++P    Y G+   G+V AT 
Sbjct: 367 AQRFGLPQKGRLAVGADADFALVALGEKFTLDTLYDRWQQNP----YRGQSFQGRVHATY 422

Query: 427 SRGNLVYKEG 436
            RG  VY+ G
Sbjct: 423 LRGQPVYQNG 432

Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring.

Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) (taxid: 243230)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 5

>sp|B7N966|ALLB_ECOLU Allantoinase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=allB PE=3 SV=1

 Score =  266 bits (680), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 155/427 (36%), Positives = 226/427 (52%), Gaps = 40/427 (9%)

Query: 30  QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIS 89
           +V+D    V+ PG++D H H+ +PGR+ WEG+ +GT+AAA GGITT+I+MPLN  P+T+ 
Sbjct: 42  EVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVD 101

Query: 90  TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG----I 145
             +++LK DAA+ ++ +D    GGLV   +YN   L  L   GV+G K F+   G     
Sbjct: 102 RASIELKFDAAKGKLTIDAAQLGGLV---SYNIDRLHELDEVGVVGFKCFVATCGDRGID 158

Query: 146 NDFPMTNASHIKEGLSVLARYKRPLLVHAEM---------EKGSERHVKLEDDTLDTRSY 196
           NDF   N     +G   L    +P+LVH E          E  SE  V   D        
Sbjct: 159 NDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDALGEEAKSEGRVTAHD-------- 210

Query: 197 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD 256
             Y+ +RP   E  AIR +L +AK         G  LHI H+S +   ++ +  A+  G 
Sbjct: 211 --YVASRPVFTEVEAIRRVLYLAK-------VAGCRLHICHIS-SPEGVEEVTRARQEGQ 260

Query: 257 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV 316
            +T E+CPHY     E+  +  T  KC+PPIRD  N++ +WE L +G ID L SDHSP  
Sbjct: 261 DVTCESCPHYFVLDTEQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCP 320

Query: 317 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSK 375
           PE+K    GN ++AWGGI+ LQ  + V +    +K G++L       +   A + G   K
Sbjct: 321 PEMK---AGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQK 377

Query: 376 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435
           G IA G  AD V  +P + + L ND  +  +H  +S Y+GR +  ++  TI RG+++Y  
Sbjct: 378 GRIAPGKDADFVFIQPNSSYVLTNDD-LEYRH-KVSPYVGRTIGARITKTILRGDVIYDI 435

Query: 436 GNHAPAA 442
               P A
Sbjct: 436 EQGFPVA 442

Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring.

Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) (taxid: 585056)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 5

>sp|Q9KAH8|ALLB_BACHD Allantoinase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=allB PE=1 SV=1

 Score =  265 bits (678), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 164/434 (37%), Positives = 239/434 (55%), Gaps = 24/434 (5%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           V I+ G I+S ++E     +S  G  +D     + PG++DVH H ++PGRTEWEGF SG+
Sbjct: 24  VAIRNG-IVSAITEPG-SISSDDGPAIDGTGLHLFPGMVDVHVHFNEPGRTEWEGFASGS 81

Query: 66  KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
           K+ AAGG+TT  DMPLNS+P TI+ E L  K   A ++  VD  FWGGLVP    N   L
Sbjct: 82  KSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVPG---NIDHL 138

Query: 126 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK--GSERH 183
           + L + GV+G K+FM   G +DF  ++   + +G+  +A     L VHAE  +   +   
Sbjct: 139 QDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAALGSILAVHAESNEMVNALTT 198

Query: 184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 243
           + +E+  L  + YS   + RP   E  A+  +L  A+ T          +HI H+S +  
Sbjct: 199 IAIEEQRLTVKDYS---EARPIVSELEAVERILRFAQLT-------CCPIHICHVS-SRK 247

Query: 244 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 303
            L  + +AK  G +++VETCPHYL FS +E  +     KCAPP+R+    E LW+ LM G
Sbjct: 248 VLKRIKQAKGEGVNVSVETCPHYLLFSLDEFAEIGYLAKCAPPLRERQEVEDLWDGLMAG 307

Query: 304 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWW 362
            ID++SSDHSP++P++K        + WGGI+  Q  L V  + G  K  + L Q+    
Sbjct: 308 EIDLISSDHSPSLPQMK--TGKTIFEVWGGIAGCQNTLAVMLTEGYHKRKMPLTQIVQLL 365

Query: 363 SERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGK 421
           S  PAK  G    KG I +G  A   + +    + L N   ++ +HP IS Y+G+R  GK
Sbjct: 366 STEPAKRFGLYPQKGTIQVGAEASFTLIDLNESYTL-NASDLYYRHP-ISPYVGQRFRGK 423

Query: 422 VLATISRGNLVYKE 435
           V  TI +G  VY++
Sbjct: 424 VKHTICQGKHVYQD 437

Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring.

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 5

>sp|Q57S43|ALLB_SALCH Allantoinase OS=Salmonella choleraesuis (strain SC-B67) GN=allB PE=3 SV=1

 Score =  265 bits (678), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 157/438 (35%), Positives = 237/438 (54%), Gaps = 37/438 (8%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           + ++ G I +I    +  +N     V+D    ++ PG++D H H+ +PGRT WEG+ +GT
Sbjct: 23  IAVQGGKIAAIGENLEEAKN-----VLDATGLIVSPGMVDAHTHISEPGRTHWEGYETGT 77

Query: 66  KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
           +AAA GGITT+I+MPLN  P+T+  ET++LK DAA+ ++ +D    GGLV   +YN   L
Sbjct: 78  RAAAKGGITTMIEMPLNQLPATVDRETIELKFDAAKGKLTIDAAQLGGLV---SYNLDRL 134

Query: 126 EALLNAGVLGLKSFMCPSG----INDFPMTNASHIKEGLSVLARYKRPLLVHAEM----- 176
             L   GV+G K F+   G     NDF   N     +G   L    + +LVH E      
Sbjct: 135 HELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFYKGAQKLGEMDQTVLVHCENALICD 194

Query: 177 EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIV 236
           E G E   K E       +   Y+ +RP   E  AIR +L +AK       A G  LH+ 
Sbjct: 195 ELGEE--AKREGRV----TAHDYVASRPVFTEVEAIRRVLYLAK-------AAGCRLHVC 241

Query: 237 HLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKL 296
           H+S +   ++ +  A+  G  +T E+CPHY     ++  +  T  KC+PPIRD  N++ +
Sbjct: 242 HIS-SPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDQENQKGM 300

Query: 297 WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTL 355
           WE L +G ID L SDHSP  PE+K    GN ++AWGGI+ LQ  + V +    +K G++L
Sbjct: 301 WEKLFNGEIDCLVSDHSPCPPEMK---AGNIMQAWGGIAGLQNCMDVMFDEAVQKRGMSL 357

Query: 356 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 415
                  +   A + G   KG IA G  ADLV  +P++ + L N+  +  +H  +S Y+G
Sbjct: 358 PMFGKLMATNAADIFGLKHKGRIAPGKDADLVFIQPDSSYVLKNED-LEYRH-KVSPYVG 415

Query: 416 RRLSGKVLATISRGNLVY 433
           R +  ++  TI RG+++Y
Sbjct: 416 RTIGARITKTILRGDVIY 433

Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring.

Salmonella choleraesuis (strain SC-B67) (taxid: 321314)

EC: 3

EC: .

EC: 5

EC: .

EC: 2

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
224079243	504	predicted protein [Populus trichocarpa]	0.986	0.880	0.809	0.0
255556025	500	allantoinase, putative [Ricinus communis	0.984	0.886	0.793	0.0
18412757	506	allantoinase [Arabidopsis thaliana] gi|1	0.982	0.873	0.765	0.0
297813881	505	hypothetical protein ARALYDRAFT_490140 [	0.982	0.875	0.772	0.0
21555036	506	unknown [Arabidopsis thaliana]	0.982	0.873	0.763	0.0
39653353	512	allantoinase [Robinia pseudoacacia]	0.986	0.867	0.716	0.0
356555194	513	PREDICTED: probable allantoinase 1-like	0.988	0.867	0.710	0.0
356549345	512	PREDICTED: probable allantoinase 1-like	0.986	0.867	0.703	0.0
356549347	513	PREDICTED: probable allantoinase 1-like	0.988	0.867	0.698	0.0
356555198	512	PREDICTED: probable allantoinase 1-like	0.986	0.867	0.701	0.0

>gi|224079243|ref|XP_002305806.1| predicted protein [Populus trichocarpa] gi|222848770|gb|EEE86317.1| predicted protein [Populus trichocarpa]

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/446 (80%), Positives = 405/446 (90%), Gaps = 2/446 (0%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
           AVE+KE  I+SI+ EEDW  N K GQ++DYGEAV+MPGLIDVHAHL+DPGRTEWEGFPSG
Sbjct: 61  AVEVKEEKIVSIIKEEDWHGNLKKGQIIDYGEAVVMPGLIDVHAHLNDPGRTEWEGFPSG 120

Query: 65  TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
           T+AAAAGGITTLIDMPLN+ P+T+S ETLKLK+DAAEK IYVDVGFWGGLVPENA++A++
Sbjct: 121 TRAAAAGGITTLIDMPLNNFPATVSAETLKLKIDAAEKNIYVDVGFWGGLVPENAFDANS 180

Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 184
           LEALL+AG LGLKSFMCPSGINDFPMTN+SHIKEGLS+LA+Y+RPLLVHAE+ + SE H 
Sbjct: 181 LEALLSAGALGLKSFMCPSGINDFPMTNSSHIKEGLSILAKYRRPLLVHAEIPQDSESH- 239

Query: 185 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 244
            LED   D RSYSTYLKTRPPSWEEAAIRELLTV+KDTR  GPAEGAHLH+VHLSDA SS
Sbjct: 240 -LEDGENDPRSYSTYLKTRPPSWEEAAIRELLTVSKDTRIGGPAEGAHLHVVHLSDAGSS 298

Query: 245 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
           L LL EAK+NGDS+TVETCPHYLAFSAEEI DGDT FKCAPPIRDAANKE+LW AL++G 
Sbjct: 299 LQLLKEAKSNGDSVTVETCPHYLAFSAEEIKDGDTCFKCAPPIRDAANKERLWTALLEGD 358

Query: 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSE 364
           IDMLSSDHSP+VP+LKL DEGNFLKAWGGISSLQFVLPVTWS+GR+YGVTLEQLA WWSE
Sbjct: 359 IDMLSSDHSPSVPDLKLFDEGNFLKAWGGISSLQFVLPVTWSHGRQYGVTLEQLALWWSE 418

Query: 365 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLA 424
           RPAKLAGQ  KGAIA+GNHAD+ VWEP  EFEL+ND PV++KHPSISAY+G +LSGKV++
Sbjct: 419 RPAKLAGQDLKGAIAVGNHADITVWEPNVEFELNNDLPVYLKHPSISAYMGSKLSGKVMS 478

Query: 425 TISRGNLVYKEGNHAPAACGSPILAT 450
           T  RGNLVYKEG HAPAACG+PILAT
Sbjct: 479 TFVRGNLVYKEGKHAPAACGAPILAT 504

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556025|ref|XP_002519047.1| allantoinase, putative [Ricinus communis] gi|223541710|gb|EEF43258.1| allantoinase, putative [Ricinus communis]

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/445 (79%), Positives = 397/445 (89%), Gaps = 2/445 (0%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
           AVE+KEGNI+S+V EEDW  N K G ++DYGE V+MPG IDVHAHLDDPGRTEWEGFPSG
Sbjct: 57  AVEVKEGNIVSVVKEEDWHVNFKRGHMIDYGEVVVMPGFIDVHAHLDDPGRTEWEGFPSG 116

Query: 65  TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
           TKAAAAGGITTLIDMPLNSDPST+S ETL+LK++AAEK IYVDVGFWGGLVPENA+N S+
Sbjct: 117 TKAAAAGGITTLIDMPLNSDPSTVSVETLRLKLEAAEKNIYVDVGFWGGLVPENAFNGSS 176

Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 184
           LEALL+AGVLGLKSFMCPSGINDFPMT+A+HIKEGLSVLA+Y+RPLLVHAE+++ SE ++
Sbjct: 177 LEALLSAGVLGLKSFMCPSGINDFPMTDATHIKEGLSVLAKYRRPLLVHAEIQQDSESYI 236

Query: 185 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 244
             ED   D R YSTYLKTRP SWEEAAIRELLTV+KDTR  GPAEG+HLHIVHLSD+ SS
Sbjct: 237 --EDGMDDPRHYSTYLKTRPASWEEAAIRELLTVSKDTRIGGPAEGSHLHIVHLSDSGSS 294

Query: 245 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
           L LL +AK +GDS+TVETCPHYLAFSAEEI DGDTRFKCAPPIRDA NKE LW+AL+ G 
Sbjct: 295 LQLLKQAKRSGDSVTVETCPHYLAFSAEEIQDGDTRFKCAPPIRDATNKEALWKALLKGD 354

Query: 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSE 364
           IDMLSSDHSPTVPELKLL+EGNFL+AWGGISSLQFV PVTW+YGRKYGVTLEQLA WWSE
Sbjct: 355 IDMLSSDHSPTVPELKLLNEGNFLRAWGGISSLQFVFPVTWTYGRKYGVTLEQLALWWSE 414

Query: 365 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLA 424
           RPAKLAGQ SKG I +G HAD+V+W+P AEF+L +D P+++KH SISAY G +LSGKVLA
Sbjct: 415 RPAKLAGQESKGGIVVGKHADIVIWDPNAEFDLSDDLPIYIKHSSISAYKGTKLSGKVLA 474

Query: 425 TISRGNLVYKEGNHAPAACGSPILA 449
           T  RGNLVY+EG HAP ACGSPILA
Sbjct: 475 TFVRGNLVYREGKHAPTACGSPILA 499

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412757|ref|NP_567276.1| allantoinase [Arabidopsis thaliana] gi|15028089|gb|AAK76575.1| unknown protein [Arabidopsis thaliana] gi|21281139|gb|AAM44996.1| unknown protein [Arabidopsis thaliana] gi|332657048|gb|AEE82448.1| allantoinase [Arabidopsis thaliana]

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/448 (76%), Positives = 396/448 (88%), Gaps = 6/448 (1%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 63
           +VE+K G I+S+V E DW ++ ++  +V+DYGEAV+MPGLIDVH HLDDPGR+EWEGFPS
Sbjct: 62  SVEVKGGIIVSVVKEVDWHKSQRSRVKVIDYGEAVLMPGLIDVHVHLDDPGRSEWEGFPS 121

Query: 64  GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
           GTKAAAAGGITTL+DMPLNS PST+S ETLKLK++AA+ RI+VDVGFWGGLVP+NA N+S
Sbjct: 122 GTKAAAAGGITTLVDMPLNSFPSTVSPETLKLKIEAAKNRIHVDVGFWGGLVPDNALNSS 181

Query: 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 183
           ALE+LL+AGVLGLKSFMCPSGINDFPMTN +HIKEGLSVLA+YKRPLLVHAE+E    R 
Sbjct: 182 ALESLLDAGVLGLKSFMCPSGINDFPMTNITHIKEGLSVLAKYKRPLLVHAEIE----RD 237

Query: 184 VKLEDDTL-DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS 242
           +++ED +  D RSY TYLKTRP SWEE AIR LL+V ++TR  G AEGAHLHIVHLSDAS
Sbjct: 238 LEIEDGSENDPRSYLTYLKTRPTSWEEGAIRNLLSVTENTRIGGSAEGAHLHIVHLSDAS 297

Query: 243 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 302
           SSLDL+ EAK  GDS+TVETCPHYLAFSAEEIP+GDTRFKC+PPIRDAAN+EKLWEALM+
Sbjct: 298 SSLDLIKEAKGKGDSVTVETCPHYLAFSAEEIPEGDTRFKCSPPIRDAANREKLWEALME 357

Query: 303 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWW 362
           G IDMLSSDHSPT PELKL+ +GNFLKAWGGISSLQFVLP+TWSYG+KYGVTLEQ+ SWW
Sbjct: 358 GDIDMLSSDHSPTKPELKLMSDGNFLKAWGGISSLQFVLPITWSYGKKYGVTLEQVTSWW 417

Query: 363 SERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKV 422
           S+RP+KLAG  SKGA+ +G HADLVVWEPEAEF++D DHP+H KHPSISAYLGRRLSGKV
Sbjct: 418 SDRPSKLAGLHSKGAVTVGKHADLVVWEPEAEFDVDEDHPIHFKHPSISAYLGRRLSGKV 477

Query: 423 LATISRGNLVYKEGNHAPAACGSPILAT 450
           ++T  RGNLV+ EG HA  ACGS  LAT
Sbjct: 478 VSTFVRGNLVFGEGKHASDACGSLQLAT 505

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813881|ref|XP_002874824.1| hypothetical protein ARALYDRAFT_490140 [Arabidopsis lyrata subsp. lyrata] gi|297320661|gb|EFH51083.1| hypothetical protein ARALYDRAFT_490140 [Arabidopsis lyrata subsp. lyrata]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/448 (77%), Positives = 393/448 (87%), Gaps = 6/448 (1%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 63
           +VE+K G I+S+V E DW ++ ++  +V+DYGEAVIMPGLIDVH HLDDPGR+EWEGF S
Sbjct: 62  SVEVKGGIIVSVVKEVDWHKSQRSRVKVIDYGEAVIMPGLIDVHVHLDDPGRSEWEGFSS 121

Query: 64  GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
           GTKAAAAGGITTL+DMPLNS PST+S ETLKLK++AAE RI+VDVGFWGGLVP+NA NAS
Sbjct: 122 GTKAAAAGGITTLVDMPLNSYPSTVSPETLKLKIEAAENRIHVDVGFWGGLVPDNALNAS 181

Query: 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 183
           ALE+LL+AGVLGLKSFMCPSGINDFPMTN +HIKEGLSVLA+Y+RPLLVHAE+EK  E  
Sbjct: 182 ALESLLDAGVLGLKSFMCPSGINDFPMTNITHIKEGLSVLAKYRRPLLVHAEVEKDLE-- 239

Query: 184 VKLED-DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS 242
             +ED +  D RSY TYLKTRP SWEE AIR LL+V ++TR  G AEGAH+HIVHLSDAS
Sbjct: 240 --IEDGNDNDPRSYLTYLKTRPTSWEEGAIRNLLSVTENTRIGGSAEGAHVHIVHLSDAS 297

Query: 243 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 302
           SSLDL+ EAK  GDS+TVETCPHYLAFSAEEIP GDTRFKC+PPIRDA N+EKLWEA+M+
Sbjct: 298 SSLDLIKEAKGKGDSVTVETCPHYLAFSAEEIPKGDTRFKCSPPIRDATNREKLWEAMME 357

Query: 303 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWW 362
           G IDMLSSDHSPT PELKLL +GNFLKAWGGISSLQFVLP+TWSYG+KYGVTLEQ+ASWW
Sbjct: 358 GDIDMLSSDHSPTKPELKLLSDGNFLKAWGGISSLQFVLPITWSYGKKYGVTLEQVASWW 417

Query: 363 SERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKV 422
           S+RP+KLAG  SKGAI +G HADLVVWEPEAEF+LD DHP+H KHPSISAYLGRRLSGKV
Sbjct: 418 SDRPSKLAGLHSKGAITVGKHADLVVWEPEAEFDLDEDHPIHFKHPSISAYLGRRLSGKV 477

Query: 423 LATISRGNLVYKEGNHAPAACGSPILAT 450
           ++T  RGNLV+ EG HA  ACGS  LAT
Sbjct: 478 VSTFVRGNLVFGEGKHASDACGSLQLAT 505

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21555036|gb|AAM63760.1| unknown [Arabidopsis thaliana]

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/448 (76%), Positives = 395/448 (88%), Gaps = 6/448 (1%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 63
           +VE+K G I+S+V E DW ++ ++  +V+DYGEAV+MPGLIDVH HLDDPGR+EWEGFPS
Sbjct: 62  SVEVKGGIIVSVVKEVDWHKSQRSRVKVIDYGEAVLMPGLIDVHVHLDDPGRSEWEGFPS 121

Query: 64  GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
           GTKAAAAGGITTL+DMPLNS PST+S ETLKLK++AA+ RI+VDVGFWGGLVP+NA N+S
Sbjct: 122 GTKAAAAGGITTLVDMPLNSFPSTVSPETLKLKIEAAKNRIHVDVGFWGGLVPDNALNSS 181

Query: 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 183
           ALE+LL+AGVLGLKSFMCPSGINDFPMTN +HIKEGLSVLA+YKRPLLVHAE+E    R 
Sbjct: 182 ALESLLDAGVLGLKSFMCPSGINDFPMTNITHIKEGLSVLAKYKRPLLVHAEIE----RD 237

Query: 184 VKLEDDTL-DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS 242
           +++ED +  D RSY TYLKTRP SWEE AIR LL+V ++TR  G AEGAHLHIVHLSDAS
Sbjct: 238 LEIEDGSENDPRSYLTYLKTRPTSWEEGAIRNLLSVTENTRIGGSAEGAHLHIVHLSDAS 297

Query: 243 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 302
           SSLDL+ EAK  GDS+TVETCPHYLAFSAEEIP+GDTRFKC+PPIRDAAN+EKLWEALM+
Sbjct: 298 SSLDLIKEAKGKGDSVTVETCPHYLAFSAEEIPEGDTRFKCSPPIRDAANREKLWEALME 357

Query: 303 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWW 362
           G IDMLSSDHSPT PELKL+ +GNFLKAWGGISSLQFVLP+TWSYG+KYGVTLEQ+ SWW
Sbjct: 358 GDIDMLSSDHSPTKPELKLMSDGNFLKAWGGISSLQFVLPITWSYGKKYGVTLEQVTSWW 417

Query: 363 SERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKV 422
           S+RP+KLA   SKGA+ +G HADLVVWEPEAEF++D DHP+H KHPSISAYLGRRLSGKV
Sbjct: 418 SDRPSKLARLHSKGAVTVGKHADLVVWEPEAEFDVDEDHPIHFKHPSISAYLGRRLSGKV 477

Query: 423 LATISRGNLVYKEGNHAPAACGSPILAT 450
           ++T  RGNLV+ EG HA  ACGS  LAT
Sbjct: 478 VSTFVRGNLVFGEGKHASDACGSLQLAT 505

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|39653353|gb|AAR29343.1| allantoinase [Robinia pseudoacacia]

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/445 (71%), Positives = 389/445 (87%), Gaps = 1/445 (0%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
           +VEI EG I+SI+       NS    V+DYGEAV+MPGLIDVH HLD+PGRTEWEGF +G
Sbjct: 68  SVEINEGEIVSIIEGYGKQGNSMQEAVIDYGEAVVMPGLIDVHVHLDEPGRTEWEGFDTG 127

Query: 65  TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
           T+AAAAGG+TT++DMPLN+ P+T+S ETL+LK++AAEK++YVDVGFWGGL+PENA N S 
Sbjct: 128 TRAAAAGGVTTVVDMPLNNYPTTVSKETLQLKLEAAEKKLYVDVGFWGGLIPENALNTSI 187

Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 184
           LE LL+AGVLG+KSFMCPSGI+DFPMT   HIKEGLSVLA+Y+RPLLVHAE+++ S+ H+
Sbjct: 188 LEGLLSAGVLGVKSFMCPSGIDDFPMTTIDHIKEGLSVLAKYRRPLLVHAEIQQDSKNHL 247

Query: 185 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 244
           +L+ +  D R+Y TYL TRPPSWE+AAI+EL+ V KDT   GP EGAH+HIVHLSD+S+S
Sbjct: 248 ELKGNG-DPRAYLTYLNTRPPSWEQAAIKELVDVTKDTIIGGPLEGAHVHIVHLSDSSAS 306

Query: 245 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
           LDL+ EAK+ GDSI+VETCPHYLAFS+EEIPD DTRFKC+PPIRDA NKEKLWEA+++GH
Sbjct: 307 LDLIKEAKSRGDSISVETCPHYLAFSSEEIPDRDTRFKCSPPIRDALNKEKLWEAVLEGH 366

Query: 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSE 364
           ID+LSSDHSPTVPELKLL+EG+FL+AWGGISSLQF LPVTWSYG+K+G+TLEQL+  WS+
Sbjct: 367 IDLLSSDHSPTVPELKLLEEGDFLRAWGGISSLQFDLPVTWSYGKKHGLTLEQLSLLWSK 426

Query: 365 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLA 424
           +PA  AG  SKGAIA+GNHAD+VVW+PE EF+L++D+PV +KHPS+SAY+GRRLSGKVL 
Sbjct: 427 KPATFAGLESKGAIAVGNHADIVVWQPELEFDLNDDYPVFIKHPSLSAYMGRRLSGKVLD 486

Query: 425 TISRGNLVYKEGNHAPAACGSPILA 449
           T  RGNLV+K+G HAPAACG PILA
Sbjct: 487 TFVRGNLVFKDGKHAPAACGVPILA 511

Source: Robinia pseudoacacia

Species: Robinia pseudoacacia

Genus: Robinia

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555194|ref|XP_003545920.1| PREDICTED: probable allantoinase 1-like [Glycine max]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/445 (71%), Positives = 382/445 (85%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
           +VEI +G IIS+V         K  +V+DYG+AVIMPGLIDVH HLD+PGRTEWEGF +G
Sbjct: 68  SVEINDGKIISVVEGHANQGKPKQEEVIDYGDAVIMPGLIDVHVHLDEPGRTEWEGFDTG 127

Query: 65  TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
           T+AAAAGG+TT++DMPLN+ P+T+S E LKLK+DAAE +IYVDVGFWGGL+PENA N S 
Sbjct: 128 TRAAAAGGVTTVVDMPLNNYPTTVSKEKLKLKLDAAEDKIYVDVGFWGGLIPENALNTSI 187

Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 184
           LE LL+AGVLG+KSFMCPSGINDFPMT   HIK GL VLA+YKRP++VHAE+++  E H+
Sbjct: 188 LEGLLSAGVLGMKSFMCPSGINDFPMTTIDHIKAGLPVLAKYKRPIVVHAEVQQDFENHL 247

Query: 185 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 244
           +L +D LD R+Y TYL  RPPSWEEAAI++L+ V KDTR  GP EGAH+HIVHLSD+S+S
Sbjct: 248 ELNEDNLDPRAYLTYLNARPPSWEEAAIKQLVGVTKDTRKGGPLEGAHVHIVHLSDSSAS 307

Query: 245 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
           LDL+ EAK+ GDSI+VETCPHYLAFS+EEIP+GDTRFKC+PPIRDA N+EKLW A+++GH
Sbjct: 308 LDLIKEAKSRGDSISVETCPHYLAFSSEEIPNGDTRFKCSPPIRDAYNREKLWGAVLEGH 367

Query: 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSE 364
           ID+LSSDHSPTVPELKL++EG+FLKAWGGISSLQF LPVTWSYG+KYG+TLEQL+  WS+
Sbjct: 368 IDLLSSDHSPTVPELKLMEEGDFLKAWGGISSLQFNLPVTWSYGKKYGLTLEQLSLLWSK 427

Query: 365 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLA 424
           +PA LAG  SKGAIA+GNHAD+VVW+PE EF+LD+D+PV +KH  +SAY+GRRLSGKVL 
Sbjct: 428 KPATLAGLESKGAIAVGNHADIVVWQPELEFDLDDDYPVFIKHSELSAYMGRRLSGKVLE 487

Query: 425 TISRGNLVYKEGNHAPAACGSPILA 449
           T  RGNLV+K+G HAPA CG  ILA
Sbjct: 488 TFVRGNLVFKDGKHAPAPCGVQILA 512

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549345|ref|XP_003543054.1| PREDICTED: probable allantoinase 1-like [Glycine max]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/445 (70%), Positives = 387/445 (86%), Gaps = 1/445 (0%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
           +VEI EG IIS++        SK  +++DYG AV+MPGLIDVH HLD+PGRT WEGF +G
Sbjct: 68  SVEINEGKIISVIKGYSKQGKSKQEKIIDYGGAVVMPGLIDVHVHLDEPGRTAWEGFDTG 127

Query: 65  TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
           T+AAAAGG+TT++DMPLN+ P+T+S ETLKLK++AAE +IYVDVGFWGGL+PENA+N S 
Sbjct: 128 TRAAAAGGVTTVVDMPLNNHPTTVSRETLKLKLEAAENKIYVDVGFWGGLIPENAHNTSI 187

Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 184
           LE LL+AGVLGLKSFMCPSGI+DFP+T   HIKEGLSVLA+Y+RPLLVH+E+++ S++H+
Sbjct: 188 LEGLLSAGVLGLKSFMCPSGISDFPLTTIHHIKEGLSVLAKYRRPLLVHSEIQQHSKKHL 247

Query: 185 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 244
           +L D     R+Y TYL TRPPSWEEAAI+EL+ V KDTR  GP EGAH+H+VHLSD+S+S
Sbjct: 248 ELNDKG-GPRAYLTYLHTRPPSWEEAAIKELVGVTKDTRKGGPLEGAHVHVVHLSDSSAS 306

Query: 245 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
           LDL+ EAK  GDSI+VETCPHYLAFS+EEIP+GDTRFKC+PPIRDA N+EKLWEA+++GH
Sbjct: 307 LDLIKEAKRRGDSISVETCPHYLAFSSEEIPNGDTRFKCSPPIRDAYNREKLWEAVLEGH 366

Query: 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSE 364
           ID+LSSDHSPTVP+LKLL+EG+FLKAWGG++SLQF LPVTWSYG+K+G+TLEQL+  WS+
Sbjct: 367 IDLLSSDHSPTVPQLKLLEEGDFLKAWGGVTSLQFDLPVTWSYGKKHGLTLEQLSLLWSK 426

Query: 365 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLA 424
           +PA  AG  SKGAIA+GNHAD+VVW+PE EF+L+ D+PV +KHPS+SAY+GRRLSGKVL 
Sbjct: 427 KPATFAGLESKGAIAVGNHADIVVWKPEVEFDLNEDYPVFLKHPSLSAYMGRRLSGKVLE 486

Query: 425 TISRGNLVYKEGNHAPAACGSPILA 449
           T  RGNLV+K+G HAP+ACG PILA
Sbjct: 487 TFVRGNLVFKKGKHAPSACGVPILA 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549347|ref|XP_003543055.1| PREDICTED: probable allantoinase 1-like [Glycine max]

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/445 (69%), Positives = 384/445 (86%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
           +VEI +G IIS+V         K  +V+DYG+AVIMPGLIDVH HL++PGRTEWEGF +G
Sbjct: 68  SVEINDGKIISVVEGHAIQGKPKQEEVIDYGDAVIMPGLIDVHVHLNEPGRTEWEGFDTG 127

Query: 65  TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
           T+AAAAGG+TT++DMPLN  P+T+S E LKLK+DAAE +IYVDVGFWGGL+PENA N S 
Sbjct: 128 TRAAAAGGVTTVVDMPLNCYPTTVSKEKLKLKLDAAEDKIYVDVGFWGGLIPENALNTSI 187

Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 184
           L+ LL+AGVLG+KSFMCPSGI+DFPM    HIK GLSVLA+Y+RP++VHAE+++  E H+
Sbjct: 188 LDGLLSAGVLGVKSFMCPSGIDDFPMATIDHIKAGLSVLAKYRRPIVVHAEIQQDFENHL 247

Query: 185 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 244
           +L +D LD R+Y TYL TRPPSWEEAAI++L++V KDTR  GP EGAH+HIVHLSD+S+S
Sbjct: 248 ELNEDNLDPRAYLTYLNTRPPSWEEAAIKQLVSVTKDTRKGGPLEGAHVHIVHLSDSSAS 307

Query: 245 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
           LDL+ EAK++GDSI+VETCPHYLAF++EEIP+GDTRFKC+PPIRDA NK+KLWEA+++GH
Sbjct: 308 LDLIKEAKSHGDSISVETCPHYLAFTSEEIPNGDTRFKCSPPIRDAYNKDKLWEAVLEGH 367

Query: 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSE 364
           ID+LS+DHSPTVPELKL++EG+FLKAWGGISSLQF LPVTWSYG+KYG+TLEQL+  WS+
Sbjct: 368 IDLLSTDHSPTVPELKLMEEGDFLKAWGGISSLQFNLPVTWSYGKKYGLTLEQLSLLWSK 427

Query: 365 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLA 424
           +PA LAG  SKG IA+GNHAD+VVW+PE EF+LD+D+PV +KH  +SAY+GRRLSGKVL 
Sbjct: 428 KPATLAGLESKGTIAVGNHADIVVWQPELEFDLDDDYPVFIKHSELSAYMGRRLSGKVLE 487

Query: 425 TISRGNLVYKEGNHAPAACGSPILA 449
           T  RGNLV+K+G HAPA CG  ILA
Sbjct: 488 TFVRGNLVFKDGKHAPAPCGVQILA 512

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555198|ref|XP_003545922.1| PREDICTED: probable allantoinase 1-like [Glycine max]

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/445 (70%), Positives = 387/445 (86%), Gaps = 1/445 (0%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
           +VEI EG IIS++        SK  +++DYG+AV+MPGLIDVH HLD+PGRT WEGF +G
Sbjct: 68  SVEINEGKIISVIEGYSKQGKSKQEKIIDYGDAVVMPGLIDVHVHLDEPGRTAWEGFDTG 127

Query: 65  TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
           T+AA+AGG+TT++DMPLN+ P+T+S ETLKLK++AAE +IYVDVGFWGGL+PENA+N S 
Sbjct: 128 TRAASAGGVTTVVDMPLNNHPTTVSKETLKLKLEAAENKIYVDVGFWGGLIPENAHNTSI 187

Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 184
           LE LL+AGVLGLKSFMC SGI+DFP+T   HIKEGLSVLA+Y+RPLLVH+E+++ S++H+
Sbjct: 188 LEGLLSAGVLGLKSFMCSSGISDFPLTTIHHIKEGLSVLAKYRRPLLVHSEIQQHSKKHL 247

Query: 185 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 244
           +L D     R+Y TYL TRPPSWEEAAI+EL+ V KDTR  GP EGAH+HIVHLSD+S+S
Sbjct: 248 ELNDKG-GPRAYLTYLHTRPPSWEEAAIKELVGVTKDTRKGGPLEGAHVHIVHLSDSSAS 306

Query: 245 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
           LDL+ EAK+ GDSI+VETCPHYLAFS+EEIP+GDTRFKC+PPIRDA N+EKLW A+++GH
Sbjct: 307 LDLIKEAKSRGDSISVETCPHYLAFSSEEIPNGDTRFKCSPPIRDAYNREKLWGAVLEGH 366

Query: 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSE 364
           ID+LSSDHSPTVP+LKLL+EG+FLKAWGG++SLQF LPVTWSYG+K+G+TLEQL+  WS+
Sbjct: 367 IDLLSSDHSPTVPQLKLLEEGDFLKAWGGVTSLQFDLPVTWSYGKKHGLTLEQLSLLWSK 426

Query: 365 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLA 424
           +PA LAG  SKGAIA+GNHAD+VVW+PE EF+L+ D+PV +KHPS+SAY+GRRLSGKVL 
Sbjct: 427 KPATLAGLESKGAIAVGNHADIVVWKPEVEFDLNEDYPVFLKHPSLSAYMGRRLSGKVLE 486

Query: 425 TISRGNLVYKEGNHAPAACGSPILA 449
           T  RGNLV+K+G HA AACG PILA
Sbjct: 487 TFVRGNLVFKKGKHAHAACGVPILA 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
TAIR|locus:505006432	506	ALN "allantoinase" [Arabidopsi	0.982	0.873	0.716	1.9e-177
TIGR_CMR|CPS_4867	473	CPS_4867 "putative allantoinas	0.897	0.854	0.417	1.2e-88
DICTYBASE|DDB_G0282199	649	allB1 "allantoinase" [Dictyost	0.931	0.645	0.376	5.5e-77
CGD|CAL0005274	586	DAL1 [Candida albicans (taxid:	0.553	0.424	0.367	4.7e-74
UNIPROTKB|Q5A7L5	586	DAL1 "Putative uncharacterized	0.553	0.424	0.367	4.7e-74
DICTYBASE|DDB_G0270162	510	allB2 "allantoinase" [Dictyost	0.866	0.764	0.390	1.1e-73
ZFIN|ZDB-GENE-041212-22	459	zgc:103559 "zgc:103559" [Danio	0.893	0.875	0.391	1.4e-73
SGD|S000001466	460	DAL1 "Allantoinase" [Saccharom	0.915	0.895	0.378	3.6e-73
FB|FBgn0030914	492	CG6106 [Drosophila melanogaste	0.877	0.802	0.397	8.9e-70
ASPGD|ASPL0000076835	506	AN4603 [Emericella nidulans (t	0.651	0.579	0.396	4.2e-69

TAIR|locus:505006432 ALN "allantoinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1723 (611.6 bits), Expect = 1.9e-177, P = 1.9e-177
 Identities = 321/448 (71%), Positives = 373/448 (83%)

Query:     5 AVEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 63
             +VE+K G I+S+V E DW ++ ++  +V+DYGEAV+MPGLIDVH HLDDPGR+EWEGFPS
Sbjct:    62 SVEVKGGIIVSVVKEVDWHKSQRSRVKVIDYGEAVLMPGLIDVHVHLDDPGRSEWEGFPS 121

Query:    64 XXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
                         L+DMPLNS PST+S ETLKLK++AA+ RI+VDVGFWGGLVP+NA N+S
Sbjct:   122 GTKAAAAGGITTLVDMPLNSFPSTVSPETLKLKIEAAKNRIHVDVGFWGGLVPDNALNSS 181

Query:   124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 183
             ALE+LL+AGVLGLKSFMCPSGINDFPMTN +HIKEGLSVLA+YKRPLLVHAE+E    R 
Sbjct:   182 ALESLLDAGVLGLKSFMCPSGINDFPMTNITHIKEGLSVLAKYKRPLLVHAEIE----RD 237

Query:   184 VKLEDDTL-DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXX 242
             +++ED +  D RSY TYLKTRP SWEE AIR LL+V ++TR  G AEGAHLHIVH     
Sbjct:   238 LEIEDGSENDPRSYLTYLKTRPTSWEEGAIRNLLSVTENTRIGGSAEGAHLHIVHLSDAS 297

Query:   243 XXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 302
                    EAK  GDS+TVETCPHYLAFSAEEIP+GDTRFKC+PPIRDAAN+EKLWEALM+
Sbjct:   298 SSLDLIKEAKGKGDSVTVETCPHYLAFSAEEIPEGDTRFKCSPPIRDAANREKLWEALME 357

Query:   303 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWW 362
             G IDMLSSDHSPT PELKL+ +GNFLKAWGGISSLQFVLP+TWSYG+KYGVTLEQ+ SWW
Sbjct:   358 GDIDMLSSDHSPTKPELKLMSDGNFLKAWGGISSLQFVLPITWSYGKKYGVTLEQVTSWW 417

Query:   363 SERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKV 422
             S+RP+KLAG  SKGA+ +G HADLVVWEPEAEF++D DHP+H KHPSISAYLGRRLSGKV
Sbjct:   418 SDRPSKLAGLHSKGAVTVGKHADLVVWEPEAEFDVDEDHPIHFKHPSISAYLGRRLSGKV 477

Query:   423 LATISRGNLVYKEGNHAPAACGSPILAT 450
             ++T  RGNLV+ EG HA  ACGS  LAT
Sbjct:   478 VSTFVRGNLVFGEGKHASDACGSLQLAT 505

GO:0000256 "allantoin catabolic process" evidence=IEA

GO:0004038 "allantoinase activity" evidence=IEA;IGI;IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0050897 "cobalt ion binding" evidence=IEA

GO:0010136 "ureide catabolic process" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006995 "cellular response to nitrogen starvation" evidence=IEP

TIGR_CMR|CPS_4867 CPS_4867 "putative allantoinase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 175/419 (41%), Positives = 252/419 (60%)

Query:    31 VVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIST 90
             + D GE V+MPGL+D H H+++PGRTEWEGF +            L+DMPLN  P T + 
Sbjct:    65 ITDLGEQVLMPGLVDSHVHINEPGRTEWEGFNTATQAAAAGGITTLVDMPLNCIPVTTTK 124

Query:    91 ETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPM 150
                + K+ +   +++VD GFWGG++P+N      L+ LL AGVLG+KSF+  SGI +FP 
Sbjct:   125 AAFEEKLASVHDKLWVDCGFWGGVIPDNI---DELDDLLTAGVLGVKSFLIDSGIEEFPN 181

Query:   151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 210
               A  I+  + +LA++  P L+HAE++ GS   VK+ D       Y+++L++RP SWE  
Sbjct:   182 VAAKDIRAAMPILAKHDVPYLIHAELDCGSFDDVKITD------KYNSFLESRPKSWENN 235

Query:   211 AIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFS 270
             AI  ++ +A++++  G  +   +HIVH            +AK  G   T ETCPHYL  +
Sbjct:   236 AISLMVDMARESKAAG--DNCKIHIVHLSSDEALDTIA-KAKAEGLRFTAETCPHYLTIA 292

Query:   271 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKA 330
             +E IPDG T FKC PPIR+  N+E+LW+A+ DG I  + SDHSP  P+LK +D G+  KA
Sbjct:   293 SENIPDGKTLFKCCPPIRENKNREQLWQAVTDGRISFIVSDHSPCTPQLKHIDTGDIEKA 352

Query:   331 WGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVW 389
             WGGIS+LQF LP+ W+  +    TL  LA   S   AK AG    KG I++G+HADL+V+
Sbjct:   353 WGGISALQFGLPLIWTEAKNRDFTLVDLARLMSHETAKFAGLDKIKGQISVGHHADLMVF 412

Query:   390 EPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 448
             +  A F +  D   H KH  I+ Y+GR++ G+++ T  RG  VY       +  G P+L
Sbjct:   413 DDTASFIISTDMIKH-KH-KITPYVGRKVDGQIMQTFVRGQQVYCNDQFISSPIGRPLL 469

GO:0000256 "allantoin catabolic process" evidence=ISS

GO:0004038 "allantoinase activity" evidence=ISS

DICTYBASE|DDB_G0282199 allB1 "allantoinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 167/444 (37%), Positives = 258/444 (58%)

Query:     5 AVEIKEGNIISIVSEEDWPRNSKTGQ--VVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 62
             ++ IK G II I   +D+    K     +++  + VIM GL+D H H+++PGRTEWEGF 
Sbjct:    25 SILIKNGIIIDI---KDYSSEIKEEHEVLIEEEKLVIMGGLVDSHVHINEPGRTEWEGFL 81

Query:    63 SXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 122
             S            +IDMPLNS P T + E L+ K+++   ++ VDVG  GG++P N+   
Sbjct:    82 SATSAAASGGVTTIIDMPLNSSPVTTTFENLQTKIESMPGKLRVDVGLLGGIIPGNSSEI 141

Query:   123 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP-------LLVHAE 175
             S +  +L  GV+G KSF+  SGI++FP      I+E ++V+ + K         ++ HAE
Sbjct:   142 SRM--VLEGGVVGFKSFLVHSGIDEFPHVKEDDIQEAMNVMKKLKDEQGGRDVVMMFHAE 199

Query:   176 MEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLH 234
             +E+   E   +L+ +  D + Y T+LK+RP   E  AI +++ + K             H
Sbjct:   200 IEEPIKEATERLQRENADPKLYDTFLKSRPRVSENIAIDKVIELTKKNMIK-------TH 252

Query:   235 IVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKE 294
             IVH                +G  IT ET  HYL F +E++P G+T +KC PP+R++ NK+
Sbjct:   253 IVHLSSSDAIEAIHEAVHNDGVPITAETTYHYLYFESEQVPYGNTLYKCCPPVRESENKD 312

Query:   295 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVT 354
              LW+A+ +G I+++ SDHSP   +LKL+++G+F+KAWGGISSLQ  LP+ W+   K GV 
Sbjct:   313 LLWKAVTNGTINIIVSDHSPCTLDLKLIEQGDFMKAWGGISSLQLGLPIIWTEASKRGVP 372

Query:   355 LEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY 413
             L +L+ + S+ P++L G    KG+I IG  AD V+W+PE  F +D    + +K+ + S Y
Sbjct:   373 LAKLSEYMSDAPSRLVGLNDRKGSIKIGRDADFVIWDPEESFTVDQGL-LMVKNKN-SPY 430

Query:   414 LGRRLSGKVLATISRGNLVYKEGN 437
              G +L G V  TI RGN ++ +G+
Sbjct:   431 HGEKLLGVVHHTILRGNKIFSKGD 454

GO:0050897 "cobalt ion binding" evidence=IEA

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

GO:0016812 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004038 "allantoinase activity" evidence=IEA;ISS

GO:0000256 "allantoin catabolic process" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0006144 "purine nucleobase metabolic process" evidence=IEA

CGD|CAL0005274 DAL1 [Candida albicans (taxid:5476)]

 Score = 414 (150.8 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
 Identities = 96/261 (36%), Positives = 144/261 (55%)

Query:   191 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXME 250
             +D  +Y+T+L +RP ++E  AI E++  +    T        LHIVH             
Sbjct:   330 IDPTAYATFLASRPDNFETTAIAEIINCSTLLPT------VPLHIVHLATHEAVPLLRA- 382

Query:   251 AKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 310
             AK  G  +T ETC HYL+  AE I    T FKC PPIR   N++ LW+AL +  I  + S
Sbjct:   383 AKAKGLPVTAETCFHYLSLCAERIGSCSTHFKCCPPIRTDDNRKLLWKALRNDVITTVVS 442

Query:   311 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG--VTLEQLASWWSERPAK 368
             DHSP  P+LK +++G+F +AWGGISS+ F LP+ ++ G K    ++L ++  W S   AK
Sbjct:   443 DHSPCTPDLKGMEKGDFFEAWGGISSVGFGLPILYTEGLKLDPPISLAEINKWCSWNTAK 502

Query:   369 LAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 427
               G    KG I +G  ADL++++ +A++ ++N    + K+  ++AY G    G+VL T+ 
Sbjct:   503 QVGLSHCKGTIRVGYDADLLIFDTDAKYVVENKE-TYFKN-KLTAYDGMEFRGRVLETLV 560

Query:   428 RGNLVYKEGNHAPAACGSPIL 448
             RGN V+  G       G  IL
Sbjct:   561 RGNTVFAMGRGFSGPKGKLIL 581

GO:0005575 "cellular_component" evidence=ND

GO:0004038 "allantoinase activity" evidence=IEA

GO:0009442 "allantoin assimilation pathway" evidence=IEA

UNIPROTKB|Q5A7L5 DAL1 "Putative uncharacterized protein DAL1" [Candida albicans SC5314 (taxid:237561)]

 Score = 414 (150.8 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
 Identities = 96/261 (36%), Positives = 144/261 (55%)

Query:   191 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXME 250
             +D  +Y+T+L +RP ++E  AI E++  +    T        LHIVH             
Sbjct:   330 IDPTAYATFLASRPDNFETTAIAEIINCSTLLPT------VPLHIVHLATHEAVPLLRA- 382

Query:   251 AKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 310
             AK  G  +T ETC HYL+  AE I    T FKC PPIR   N++ LW+AL +  I  + S
Sbjct:   383 AKAKGLPVTAETCFHYLSLCAERIGSCSTHFKCCPPIRTDDNRKLLWKALRNDVITTVVS 442

Query:   311 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG--VTLEQLASWWSERPAK 368
             DHSP  P+LK +++G+F +AWGGISS+ F LP+ ++ G K    ++L ++  W S   AK
Sbjct:   443 DHSPCTPDLKGMEKGDFFEAWGGISSVGFGLPILYTEGLKLDPPISLAEINKWCSWNTAK 502

Query:   369 LAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 427
               G    KG I +G  ADL++++ +A++ ++N    + K+  ++AY G    G+VL T+ 
Sbjct:   503 QVGLSHCKGTIRVGYDADLLIFDTDAKYVVENKE-TYFKN-KLTAYDGMEFRGRVLETLV 560

Query:   428 RGNLVYKEGNHAPAACGSPIL 448
             RGN V+  G       G  IL
Sbjct:   561 RGNTVFAMGRGFSGPKGKLIL 581

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0270162 allB2 "allantoinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 162/415 (39%), Positives = 240/415 (57%)

Query:    38 VIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKV 97
             +IM GL+D H H+++PGRTEWEGF S            ++DMPLNS P T S + L  K+
Sbjct:    88 IIMGGLVDSHVHVNEPGRTEWEGFESATSAAAAGGVTTIVDMPLNSSPVTTSFKNLLDKI 147

Query:    98 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 157
             ++ + ++ VDVG  GG+VP N+     +  +L  GVLG KSF+ PSGI++FP  N + I+
Sbjct:   148 ESMKGKLRVDVGLLGGIVPGNSKEIKKM--VLQGGVLGFKSFLLPSGIDEFPPVNENDIQ 205

Query:   158 EGLSVL----ARYKRP---LLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEE 209
             E ++ +     +Y      ++ HAE+E+   E  V+L+++  D + Y TYL +RP   E 
Sbjct:   206 EAMNEMKLLKCQYNNSDVIMMFHAEVEEPIKEATVRLKNENADPKLYKTYLDSRPKISEN 265

Query:   210 AAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAF 269
              AI +L+ + +  +          HIVH            EA   G  I+ ET  +YL  
Sbjct:   266 QAISKLIDITRQNQI------VSTHIVHLSSSESIEQIR-EAMDQGVPISAETTYNYLHL 318

Query:   270 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDE----- 324
             ++E +P G+T FK APP+R+  NKE LW A+++G I ++ SDHSP    LK L E     
Sbjct:   319 TSESVPYGNTLFKSAPPVREHENKELLWNAIINGTIKLIVSDHSPCTINLKQLKEDNQSI 378

Query:   325 GNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNH 383
             G+FLKAWGGISSL+  LP+ W+  +  G+ + QL+ W S  P+KL G    KG+I IG  
Sbjct:   379 GDFLKAWGGISSLELGLPIIWTECKNRGIPITQLSEWLSNGPSKLVGLNDRKGSIEIGRD 438

Query:   384 ADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 438
             AD V++ P   F + N+  + +K+   SAY G +L G V  TI RGN ++K+G++
Sbjct:   439 ADFVIFNPNESF-IVNEKKLFLKN-KFSAYNGEKLFGVVYETILRGNSIFKKGDN 491

GO:0050897 "cobalt ion binding" evidence=IEA

GO:0016812 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004038 "allantoinase activity" evidence=IEA;ISS

GO:0000256 "allantoin catabolic process" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006144 "purine nucleobase metabolic process" evidence=IEA

ZFIN|ZDB-GENE-041212-22 zgc:103559 "zgc:103559" [Danio rerio (taxid:7955)]

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 165/421 (39%), Positives = 227/421 (53%)

Query:    29 GQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTI 88
             G+V+D G+++IMPG++D H H+++PGRT+WEG+ +            + DMPLN+ P T 
Sbjct:    48 GKVLDVGDSLIMPGIVDSHVHVNEPGRTDWEGYWTATRAAAAGGITTIADMPLNTIPPTT 107

Query:    89 STETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDF 148
             +      K+ AA  + +VD  FWGG++P N      L+ +  AGV G K F+  SG+ +F
Sbjct:   108 TLRNFNEKLCAATGQCFVDTAFWGGVIPGNQME---LKPMCQAGVAGFKCFLIHSGVEEF 164

Query:   149 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWE 208
             P    + +   +  L      LL HAE E     H   E    D + YST+LK+RP   E
Sbjct:   165 PHVTDADLHAAMKQLQGTNSVLLFHAEQELS---HPVAEKG--DPQEYSTFLKSRPDIME 219

Query:   209 EAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLA 268
               AI  ++      +          HIVH             AK  G  +TVET  HYL 
Sbjct:   220 LEAIHTVIEFCLQYQV-------RCHIVHLSSAEPLELIRA-AKQAGAPLTVETTHHYLN 271

Query:   269 FSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFL 328
              SAE+IP   T+FKC PPIR  AN+E LW AL  G IDM+ SDHSP  P+LK LD G+F 
Sbjct:   272 LSAEDIPGRATQFKCCPPIRGTANQELLWSALKAGDIDMVVSDHSPCTPDLKCLDSGDFT 331

Query:   329 KAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLV 387
             +AWGGISSLQF L + W+   K G +    A    E PA+L      KG++  G+ ADLV
Sbjct:   332 QAWGGISSLQFGLSLFWTSASKRGFSFSDAARLLREEPARLCRLDNQKGSLIPGHDADLV 391

Query:   388 VWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 447
             +W+PE EF +  D+ +H K+  ++ YL R L G V   I RG +VY  G+ +    G  +
Sbjct:   392 IWDPEKEFTVKEDN-IHHKN-KLTPYLDRVLRGMVRFPIVRGQVVYSHGSFSSQPLGKHL 449

Query:   448 L 448
             L
Sbjct:   450 L 450

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000256 "allantoin catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0050897 "cobalt ion binding" evidence=IEA

GO:0016812 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides" evidence=IEA

GO:0004038 "allantoinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

SGD|S000001466 DAL1 "Allantoinase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 164/433 (37%), Positives = 244/433 (56%)

Query:     6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXX 65
             +++ EG   S+V E+      +   + +     I+PGL+D H HL++PGRT WEGF +  
Sbjct:    32 LDVLEG---SVVMEKTEITKYEIHTLENVSPCTILPGLVDSHVHLNEPGRTSWEGFETGT 88

Query:    66 XXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
                       ++DMPLN+ P T + E  ++K++AAE +++ DVGFWGGLVP   +N   L
Sbjct:    89 QAAISGGVTTVVDMPLNAIPPTTNVENFRIKLEAAEGQMWCDVGFWGGLVP---HNLPDL 145

Query:   126 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK 185
               L+ AGV G K F+  SG+ +FP     +I+E L VLA     ++ HAE+ K  E   +
Sbjct:   146 IPLVKAGVRGFKGFLLDSGVEEFPPIGKEYIEEALKVLAEEDTMMMFHAELPKAHEDQQQ 205

Query:   186 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXX 245
              E      R YS++L +RP S+E  AI  +L   +    +GP     +HIVH        
Sbjct:   206 PEQSH---REYSSFLSSRPDSFEIDAINLILECLR--ARNGPVPP--VHIVHLASMKAIP 258

Query:   246 XXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI 305
                 +A+ +G  +T ETC HYL  +AE+IPDG T FKC PPIR  +N++ LW+AL +G I
Sbjct:   259 LIR-KARASGLPVTTETCFHYLCIAAEQIPDGATYFKCCPPIRSESNRQGLWDALREGVI 317

Query:   306 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSER 365
               + SDHSP  PELK L +G+F  +WGGI+S+   LP+ ++ G     +L  + +W  + 
Sbjct:   318 GSVVSDHSPCTPELKNLQKGDFFDSWGGIASVGLGLPLMFTQG----CSLVDIVTWCCKN 373

Query:   366 PAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLA 424
              +   G    KG IA G  ADLVV++  ++ ++ N   V+ K+  ++AY G  + G VL 
Sbjct:   374 TSHQVGLSHQKGTIAPGYDADLVVFDTASKHKISNSS-VYFKN-KLTAYNGMTVKGTVLK 431

Query:   425 TISRGNLVYKEGN 437
             TI RG +VY   N
Sbjct:   432 TILRGQVVYTNAN 444

GO:0000256 "allantoin catabolic process" evidence=IEA

GO:0004038 "allantoinase activity" evidence=IEA;IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0016812 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides" evidence=IEA

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

GO:0050897 "cobalt ion binding" evidence=IEA

GO:0006144 "purine nucleobase metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0009442 "allantoin assimilation pathway" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0030914 CG6106 [Drosophila melanogaster (taxid:7227)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 170/428 (39%), Positives = 233/428 (54%)

Query:    25 NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSD 84
             N+++  V D+G+ V+MPGLID + H+++PGR +WEGF +            +ID P N+ 
Sbjct:    55 NTESESVYDFGDLVLMPGLIDPNVHINEPGRKDWEGFATATKAAAAGGFTTIIDRPTNAQ 114

Query:    85 PSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMC-PS 143
             P T+S   LK K   A  +IYVDVGFWGGLVP N      L ALL AGV+GL+  +C P+
Sbjct:   115 PPTVSVAHLKAKTSTARGKIYVDVGFWGGLVPGNG---DQLAALLGAGVMGLQCTLCDPA 171

Query:   144 G--INDFPMTNASHIKEGLSVL----ARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 197
                  +FP  N S ++E LS L    A  +  + VHAE+   +E H     D    R Y 
Sbjct:   172 APVSQEFPAVNESQLEEALSQLDKDQAEGEAIVAVHAELPLTTEIH----PDEEAPREYG 227

Query:   198 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDS 257
             T+L TRPP  E +A + L  +A       P     +HI++            E +  G +
Sbjct:   228 TFLVTRPPQMEISATQLLCRLANRH----PRRC--IHILNCSSGESLPLVE-ECRRQGGN 280

Query:   258 ITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTV 316
             +TV+TCPHYLA +AE++PD  T FK  PPIR+  N+E+LW+AL  G  I M+ SDHSP  
Sbjct:   281 LTVDTCPHYLALAAEDVPDCGTEFKTWPPIRERRNQEQLWQALRPGGAIRMIGSDHSPAT 340

Query:   317 PELKLLD----EGNFLKAWGGISSLQFVLPVTWSYG-RKYG---VTLEQLASWWSERPAK 368
             P  + L      GNFLKAW GI+SLQ  L V W+    + G   +T+  +     + PA 
Sbjct:   341 PGARALTCGRGRGNFLKAWPGINSLQLSLSVVWTAAANRRGSANLTIADIHRLMCQEPAN 400

Query:   369 LAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 427
             L G   SKG IA G  AD  VW PE EF +  +  +       + Y G++L G V AT+ 
Sbjct:   401 LCGLSASKGRIAEGYDADFCVWSPEEEFTVGPE--LLYTATKATPYAGQKLRGVVHATVV 458

Query:   428 RGNLVYKE 435
             RG  VY++
Sbjct:   459 RGLHVYQQ 466

GO:0004038 "allantoinase activity" evidence=ISS

GO:0000256 "allantoin catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0050897 "cobalt ion binding" evidence=IEA

ASPGD|ASPL0000076835 AN4603 [Emericella nidulans (taxid:162425)]

 Score = 569 (205.4 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
 Identities = 125/315 (39%), Positives = 181/315 (57%)

Query:    15 SIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXX 74
             S++   D+P  +      D+   V++PGL+D H HL++PGRTEWEGF +           
Sbjct:    42 SVIPASDFPDGTP---YTDFSPYVLLPGLVDAHVHLNEPGRTEWEGFYTGTQAAAFGGVT 98

Query:    75 XLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVL 134
              +IDMPLN+ P T + E  KLK+ AAE + +VDVGF+GG++P NA     L+AL+  GV 
Sbjct:    99 TVIDMPLNAIPPTTTVENFKLKLKAAEGKCWVDVGFYGGIIPGNA---GELKALVREGVR 155

Query:   135 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM---EKGSERHVKLEDDTL 191
             G K F+  SG+++FP  ++  +++ ++ LA     L+ HAEM   +  SE    + +   
Sbjct:   156 GFKGFLIDSGVDEFPAVSSEDVRKAMAELADEPTTLMFHAEMVPPKTPSELPEVMPEGAP 215

Query:   192 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEA 251
             +  +YST+L +RP  +E  A+ E+L+++        A    LHIVH            +A
Sbjct:   216 E--AYSTFLASRPSEYELCAVEEILSLSH------LAPKLPLHIVHLSAMEAIPLLR-KA 266

Query:   252 KTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEAL----MDGHIDM 307
             +  G  IT ETC HYL+ +AEEI DGDTR KC PPIR  +N++ LW  L     DG I  
Sbjct:   267 RAEGVPITAETCYHYLSLAAEEIRDGDTRHKCCPPIRSKSNQDALWAELDRHAEDGVIKT 326

Query:   308 LSSDHSPTVPELKLL 322
             + SDHSP  P+LKLL
Sbjct:   327 IVSDHSPCTPDLKLL 341

GO:0004038 "allantoinase activity" evidence=RCA;IMP

GO:0006139 "nucleobase-containing compound metabolic process" evidence=RCA

GO:0006145 "purine nucleobase catabolic process" evidence=IMP

GO:0005575 "cellular_component" evidence=ND

GO:0009442 "allantoin assimilation pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B1XGB0	ALLB_ECODH	3, ., 5, ., 2, ., 5	0.3640	0.8688	0.8631	yes	no
O32137	ALLB_BACSU	3, ., 5, ., 2, ., 5	0.3566	0.8444	0.8520	yes	no
Q82LL4	ALLB_STRAW	3, ., 5, ., 2, ., 5	0.4239	0.9044	0.9146	yes	no
A1A8H7	ALLB_ECOK1	3, ., 5, ., 2, ., 5	0.3481	0.9022	0.8962	yes	no
Q02C42	ALLB_SOLUE	3, ., 5, ., 2, ., 5	0.3665	0.8466	0.8336	yes	no
Q9RV76	ALLB_DEIRA	3, ., 5, ., 2, ., 5	0.3697	0.9044	0.9084	yes	no
B6I0G2	ALLB_ECOSE	3, ., 5, ., 2, ., 5	0.3559	0.86	0.8543	yes	no
A9MW45	ALLB_SALPB	3, ., 5, ., 2, ., 5	0.3704	0.8466	0.8410	yes	no
B5EYC3	ALLB_SALA4	3, ., 5, ., 2, ., 5	0.3704	0.8466	0.8410	yes	no
Q24PT9	ALLB_DESHY	3, ., 5, ., 2, ., 5	0.3545	0.9066	0.9086	yes	no
Q82ZQ1	ALLB_ENTFA	3, ., 5, ., 2, ., 5	0.3424	0.9088	0.9008	yes	no
P32375	ALN_YEAST	3, ., 5, ., 2, ., 5	0.4203	0.8533	0.8347	yes	no
Q9KAH8	ALLB_BACHD	3, ., 5, ., 2, ., 5	0.3778	0.9111	0.9360	yes	no
Q5PCG0	ALLB_SALPA	3, ., 5, ., 2, ., 5	0.3704	0.8466	0.8410	yes	no
A7ZIR8	ALLB_ECO24	3, ., 5, ., 2, ., 5	0.3559	0.86	0.8543	yes	no
B1IZ89	ALLB_ECOLC	3, ., 5, ., 2, ., 5	0.3606	0.86	0.8543	yes	no
B5FLN3	ALLB_SALDC	3, ., 5, ., 2, ., 5	0.3704	0.8466	0.8410	yes	no
Q1J391	ALLB_DEIGD	3, ., 5, ., 2, ., 5	0.3685	0.8511	0.8530	yes	no
B7N966	ALLB_ECOLU	3, ., 5, ., 2, ., 5	0.3629	0.86	0.8543	yes	no
Q0TKD0	ALLB_ECOL5	3, ., 5, ., 2, ., 5	0.3481	0.9022	0.8962	yes	no
B7M4L5	ALLB_ECO8A	3, ., 5, ., 2, ., 5	0.3559	0.86	0.8543	yes	no
B1LKD0	ALLB_ECOSM	3, ., 5, ., 2, ., 5	0.3640	0.8688	0.8631	yes	no
Q5WBJ6	ALLB_BACSK	3, ., 5, ., 2, ., 5	0.3623	0.9	0.9040	yes	no
Q65LN0	ALLB_BACLD	3, ., 5, ., 2, ., 5	0.3509	0.9066	0.8986	yes	no
B7L7D8	ALLB_ECO55	3, ., 5, ., 2, ., 5	0.3559	0.86	0.8543	yes	no
A7ZXG5	ALLB_ECOHS	3, ., 5, ., 2, ., 5	0.3583	0.86	0.8543	yes	no
Q8FK60	ALLB_ECOL6	3, ., 5, ., 2, ., 5	0.3481	0.9022	0.8962	yes	no
C4ZUW1	ALLB_ECOBW	3, ., 5, ., 2, ., 5	0.3640	0.8688	0.8631	yes	no
Q1AS71	ALLB_RUBXD	3, ., 5, ., 2, ., 5	0.3808	0.8666	0.8590	yes	no
Q7CR08	ALLB_SALTY	3, ., 5, ., 2, ., 5	0.3704	0.8466	0.8410	yes	no
B8G120	ALLB_DESHD	3, ., 5, ., 2, ., 5	0.3485	0.9088	0.9109	yes	no
A7Z8F5	ALLB_BACA2	3, ., 5, ., 2, ., 5	0.3665	0.8644	0.8568	yes	no
B5BD11	ALLB_SALPK	3, ., 5, ., 2, ., 5	0.3704	0.8466	0.8410	yes	no
B4T9L5	ALLB_SALHS	3, ., 5, ., 2, ., 5	0.3704	0.8466	0.8410	yes	no
Q1RF23	ALLB_ECOUT	3, ., 5, ., 2, ., 5	0.3481	0.9022	0.8962	yes	no
B5R646	ALLB_SALG2	3, ., 5, ., 2, ., 5	0.3680	0.8466	0.8410	yes	no
B0K2E8	PYRC_THEPX	3, ., 5, ., 2, ., 3	0.3065	0.84	0.8770	yes	no
B4SXM8	ALLB_SALNS	3, ., 5, ., 2, ., 5	0.3704	0.8466	0.8410	yes	no
B5QUT6	ALLB_SALEP	3, ., 5, ., 2, ., 5	0.3704	0.8466	0.8410	yes	no
B0KA35	PYRC_THEP3	3, ., 5, ., 2, ., 3	0.3065	0.84	0.8770	yes	no
B7MQM2	ALLB_ECO81	3, ., 5, ., 2, ., 5	0.3481	0.9022	0.8962	yes	no
Q57S43	ALLB_SALCH	3, ., 5, ., 2, ., 5	0.3584	0.8911	0.8852	yes	no
B7ME34	ALLB_ECO45	3, ., 5, ., 2, ., 5	0.3481	0.9022	0.8962	yes	no
B7UKI9	ALLB_ECO27	3, ., 5, ., 2, ., 5	0.3481	0.9022	0.8962	yes	no
Q9RKU5	ALLB_STRCO	3, ., 5, ., 2, ., 5	0.4408	0.8488	0.8584	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.2.5	0.914
3rd Layer	3.5.2	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_IV0194	allantoinase (EC-3.5.2.5) (504 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_290028	hypothetical protein (442 aa)	•					•	•		0.986
	fgenesh4_pg.C_LG_II002390	hypothetical protein (289 aa)	•					•			0.940
	fgenesh4_pg.C_scaffold_13902000001	Predicted protein (319 aa)	•		•		•	•	•		0.894
	fgenesh4_pg.C_LG_X000698	hypothetical protein (442 aa)	•					•	•		0.866
	estExt_fgenesh4_pg.C_LG_X2235	RecName- Full=Uricase; EC=1.7.3.3;; Catalyzes the oxidation of uric acid to 5- hydroxyisourate, [...] (308 aa)	•		•				•		0.822
	eugene3.00012554	aspartate carbamoyltransferase (EC-2.1.3.2) (332 aa)	•					•	•		0.713
	eugene3.00290107	hypothetical protein (253 aa)	•								0.608
	grail3.3134000101	Predicted protein (100 aa)							•		0.596
	fgenesh4_pg.C_scaffold_2544000001	Predicted protein (312 aa)							•		0.523
	eugene3.19380001	Predicted protein (500 aa)	•								0.505

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	450
PLN02795	505	PLN02795, PLN02795, allantoinase	0.0
cd01315	447	cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and A	0.0
TIGR03178	443	TIGR03178, allantoinase, allantoinase	1e-152
PRK06189	451	PRK06189, PRK06189, allantoinase; Provisional	1e-119
COG0044	430	COG0044, PyrC, Dihydroorotase and related cyclic a	1e-110
PRK08044	449	PRK08044, PRK08044, allantoinase; Provisional	1e-97
cd01318	361	cd01318, DHOase_IIb, Dihydroorotase (DHOase), subg	2e-71
PRK09357	423	PRK09357, pyrC, dihydroorotase; Validated	1e-67
cd01302	337	cd01302, Cyclic_amidohydrolases, Cyclic amidohydro	7e-67
cd01317	374	cd01317, DHOase_IIa, Dihydroorotase (DHOase), subg	6e-65
TIGR00857	411	TIGR00857, pyrC_multi, dihydroorotase, multifuncti	9e-65
cd01314	447	cd01314, D-HYD, D-hydantoinases (D-HYD) also calle	8e-64
PRK02382	443	PRK02382, PRK02382, dihydroorotase; Provisional	2e-54
PRK08323	459	PRK08323, PRK08323, phenylhydantoinase; Validated	7e-54
PRK09060	444	PRK09060, PRK09060, dihydroorotase; Validated	9e-54
TIGR02033	454	TIGR02033, D-hydantoinase, D-hydantoinase	1e-50
PRK07575	438	PRK07575, PRK07575, dihydroorotase; Provisional	3e-47
PRK09236	444	PRK09236, PRK09236, dihydroorotase; Reviewed	1e-44
PRK13404	477	PRK13404, PRK13404, dihydropyrimidinase; Provision	1e-42
PRK04250	398	PRK04250, PRK04250, dihydroorotase; Provisional	5e-40
PRK01211	409	PRK01211, PRK01211, dihydroorotase; Provisional	3e-36
PRK00369	392	PRK00369, pyrC, dihydroorotase; Provisional	6e-31
PRK07627	425	PRK07627, PRK07627, dihydroorotase; Provisional	9e-27
PLN02942	486	PLN02942, PLN02942, dihydropyrimidinase	3e-26
PRK08417	386	PRK08417, PRK08417, dihydroorotase; Provisional	1e-23
PRK07369	418	PRK07369, PRK07369, dihydroorotase; Provisional	1e-23
cd01316	344	cd01316, CAD_DHOase, The eukaryotic CAD protein is	3e-22
PRK09059	429	PRK09059, PRK09059, dihydroorotase; Validated	4e-13
pfam13594	66	pfam13594, Amidohydro_5, Amidohydrolase	6e-12
pfam01979	307	pfam01979, Amidohydro_1, Amidohydrolase family	3e-10
cd01292	275	cd01292, metallo-dependent_hydrolases, Superfamily	5e-10
PRK09059	429	PRK09059, PRK09059, dihydroorotase; Validated	7e-09
pfam13147	304	pfam13147, Amidohydro_4, Amidohydrolase	4e-08
cd01297	415	cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D	2e-06
COG0402	421	COG0402, SsnA, Cytosine deaminase and related meta	2e-05
COG1228	406	COG1228, HutI, Imidazolonepropionase and related a	6e-05
PRK13308	569	PRK13308, ureC, urease subunit alpha; Reviewed	6e-05
PRK09356	406	PRK09356, PRK09356, imidazolonepropionase; Validat	1e-04
cd00854	374	cd00854, NagA, N-acetylglucosamine-6-phosphate dea	2e-04
cd01296	371	cd01296, Imidazolone-5PH, Imidazolonepropionase/im	4e-04
COG1574	535	COG1574, COG1574, Predicted metal-dependent hydrol	6e-04
PRK09045	443	PRK09045, PRK09045, N-ethylammeline chlorohydrolas	6e-04
cd01306	325	cd01306, PhnM, PhnM is believed to be a subunit of	7e-04
cd01299	342	cd01299, Met_dep_hydrolase_A, Metallo-dependent hy	0.001
cd01307	338	cd01307, Met_dep_hydrolase_B, Metallo-dependent hy	0.002
cd01309	359	cd01309, Met_dep_hydrolase_C, Metallo-dependent hy	0.002
cd01300	479	cd01300, YtcJ_like, YtcJ_like metal dependent amid	0.003
cd01303	429	cd01303, GDEase, Guanine deaminase (GDEase)	0.003

>gnl|CDD|178392 PLN02795, PLN02795, allantoinase

 Score =  797 bits (2060), Expect = 0.0
 Identities = 324/446 (72%), Positives = 376/446 (84%), Gaps = 3/446 (0%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
           AVE++ G I+S+  EE+ P++ K   V+DYG AV+MPGLIDVH HL++PGRTEWEGFP+G
Sbjct: 63  AVEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLIDVHVHLNEPGRTEWEGFPTG 122

Query: 65  TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
           TKAAAAGGITTL+DMPLNS PST S ETL+LK++AA+ ++YVDVGFWGGLVPENA+NAS 
Sbjct: 123 TKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVPENAHNASV 182

Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 184
           LE LL+AG LGLKSFMCPSGINDFPMT A+HIK  L VLA+Y RPLLVHAE+    E   
Sbjct: 183 LEELLDAGALGLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVESDS 242

Query: 185 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 244
           +L+ D    RSYSTYLK+RPPSWE+ AIR+LL VAKDTR  G AEGAH+HIVHLSDA SS
Sbjct: 243 RLDADP---RSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIVHLSDAESS 299

Query: 245 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
           L+L+ EAK  GDS+TVETCPHYLAFSAEEIPDGDTR+KCAPPIRDAAN+E LW+AL+DG 
Sbjct: 300 LELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGD 359

Query: 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSE 364
           IDMLSSDHSP+ P+LKLL+EGNFL+AWGGISSLQFVLP TW+ GR YG+TLEQLA WWSE
Sbjct: 360 IDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQFVLPATWTAGRAYGLTLEQLARWWSE 419

Query: 365 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLA 424
           RPAKLAG  SKGAIA G  AD+VVW+PEAEF LD  +P++ KH S+S YLG +LSGKV+A
Sbjct: 420 RPAKLAGLDSKGAIAPGKDADIVVWDPEAEFVLDESYPIYHKHKSLSPYLGTKLSGKVIA 479

Query: 425 TISRGNLVYKEGNHAPAACGSPILAT 450
           T  RGNLV+ EG HA  ACGSPILA 
Sbjct: 480 TFVRGNLVFLEGKHAKQACGSPILAK 505

Length = 505

>gnl|CDD|238640 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology)

 Score =  583 bits (1504), Expect = 0.0
 Identities = 217/445 (48%), Positives = 283/445 (63%), Gaps = 19/445 (4%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           + +K G I +I  +       +   V+D G  V+MPGLID H H+++PGRTEWEGF +GT
Sbjct: 20  IAVKGGKIAAIGPDIANTEAEE---VIDAGGLVVMPGLIDTHVHINEPGRTEWEGFETGT 76

Query: 66  KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
           KAAAAGGITT+IDMPLNS P T + E L+ K++AA+ +++VDVGFWGGLVP    N   L
Sbjct: 77  KAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVP---GNLDQL 133

Query: 126 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK 185
             L  AGV+G K F+CPSG+++FP  +   ++E +  LA+    L VHAE  + +E   +
Sbjct: 134 RPLDEAGVVGFKCFLCPSGVDEFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITEALQE 193

Query: 186 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSL 245
                   R Y  YL +RP   E  AI+ +L +AK+T       G  LHIVHLS A + +
Sbjct: 194 QAKAK-GKRDYRDYLASRPVFTEVEAIQRILLLAKET-------GCRLHIVHLSSAEA-V 244

Query: 246 DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI 305
            L+ EA+  G  +TVETCPHYL F+AE++PDG T FKCAPPIRDAAN+E+LWEAL +G I
Sbjct: 245 PLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAANQEQLWEALENGDI 304

Query: 306 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASWWSE 364
           DM+ SDHSP  PELKLL +G+F KAWGGIS LQ  LPV  +        +LE +A    E
Sbjct: 305 DMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLEDIARLMCE 364

Query: 365 RPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVL 423
            PAKL G    KG IA+G  AD VVW+PE EF +D +   +     IS Y+GR L G+V 
Sbjct: 365 NPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDAEDLYY--KNKISPYVGRTLKGRVH 422

Query: 424 ATISRGNLVYKEGNHAPAACGSPIL 448
           ATI RG +VY++G       G  +L
Sbjct: 423 ATILRGTVVYQDGEVVGEPLGQLLL 447

But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. Length = 447

>gnl|CDD|163175 TIGR03178, allantoinase, allantoinase

 Score =  440 bits (1133), Expect = e-152
 Identities = 197/445 (44%), Positives = 268/445 (60%), Gaps = 21/445 (4%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
            V +K G I +I  +   P      +++D G  V+ PG++D H H+++PGRTEWEGF +G
Sbjct: 19  DVGVKGGKIAAIGPDILGP----AAKIIDAGGLVVFPGVVDTHVHINEPGRTEWEGFETG 74

Query: 65  TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
           T+AAAAGGITT IDMPLNS P+T +  +L+ K +AA+ ++ VDVGFWGGLVP   YN   
Sbjct: 75  TRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFWGGLVP---YNLDD 131

Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 184
           L  L  AGV+G K+F+ PSG ++FP  +   + +G+  LAR  + LLVHAE    +   +
Sbjct: 132 LRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMRELARLGQLLLVHAENPAITSA-L 190

Query: 185 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 244
             E           YL +RP   E  AIR  L +AK T       G  +H+VHLS ++ +
Sbjct: 191 GEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVT-------GCRVHVVHLS-SAEA 242

Query: 245 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
           ++L+ EAK  G  +TVETCPHYL  +AEE+PDG T  KCAPPIRD AN+E LWEAL++G 
Sbjct: 243 VELITEAKQEGLDVTVETCPHYLTLTAEEVPDGGTLAKCAPPIRDLANQEGLWEALLNGL 302

Query: 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWS 363
           ID + SDHSP  P+LK    G+F KAWGGI+ LQ  L V +    +K G+ LE +A   +
Sbjct: 303 IDCVVSDHSPCTPDLK--RAGDFFKAWGGIAGLQSTLDVMFDEAVQKRGLPLEDIARLMA 360

Query: 364 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVL 423
             PAK  G   KG IA G  AD V  +P+  + L  D   + +H  +S Y+GR + G+V 
Sbjct: 361 TNPAKRFGLAQKGRIAPGKDADFVFVDPDESYTLTPDDLYY-RHK-VSPYVGRTIGGRVR 418

Query: 424 ATISRGNLVYKEGNHAPAACGSPIL 448
           AT  RG  +Y +     A  G  +L
Sbjct: 419 ATYLRGQCIYDDEQFIGAPKGQLLL 443

This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. Length = 443

>gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional

 Score =  354 bits (910), Expect = e-119
 Identities = 168/433 (38%), Positives = 236/433 (54%), Gaps = 27/433 (6%)

Query: 8   IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKA 67
           IK G I  I  E   P      +++D     + PG+IDVH H ++PGRT WEGF +G+ A
Sbjct: 25  IKNGKIAEIAPEISSP----AREIIDADGLYVFPGMIDVHVHFNEPGRTHWEGFATGSAA 80

Query: 68  AAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEA 127
            AAGG TT  DMPLNS P T++ E L  K + A ++  VD   WGGLVP    N   L  
Sbjct: 81  LAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALWGGLVPG---NLEHLRE 137

Query: 128 LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE---MEKGSERHV 184
           L  AGV+G K+FM  SG ++F  ++   + EG+  +A   + L +HAE   + +      
Sbjct: 138 LAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRHLTTQA 197

Query: 185 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 244
           + +  T D R    YL++RP   E  A++  L  A++T       G  LH VH+S    +
Sbjct: 198 RQQGKT-DVRD---YLESRPVVAELEAVQRALLYAQET-------GCPLHFVHISSG-KA 245

Query: 245 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
           + L+ EAK  G  ++VETCPHYL F+ E+        KCAPP+R  + KE+LW  L+ G 
Sbjct: 246 VALIAEAKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLLAGE 305

Query: 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWS 363
           IDM+SSDHSP  PELK  +  +F   WGGIS  Q  L V  + G  + G+ LE +A   +
Sbjct: 306 IDMISSDHSPCPPELK--EGDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLETIARLLA 363

Query: 364 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVL 423
             PAK  G   KG + +G  AD V+ + +  + L  +  +  +H   S Y GR   G+V+
Sbjct: 364 TNPAKRFGLPQKGRLEVGADADFVLVDLDETYTLTKED-LFYRHK-QSPYEGRTFPGRVV 421

Query: 424 ATISRGNLVYKEG 436
           AT  RG  VY++G
Sbjct: 422 ATYLRGQCVYQDG 434

Length = 451

>gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]

 Score =  331 bits (851), Expect = e-110
 Identities = 150/432 (34%), Positives = 224/432 (51%), Gaps = 28/432 (6%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           + IK+G I +I         +   +++D    +++PGL+D+H H  +PG    E F +G+
Sbjct: 21  ILIKDGKIAAIGKN---LEPTSGAEIIDAKGLLVLPGLVDLHVHFREPGFEHKETFETGS 77

Query: 66  KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
           +AAAAGG+TT++DMP    P   + E L+ K++ A+ +  VD  F+GGL      N   L
Sbjct: 78  RAAAAGGVTTVVDMPNTKPPID-TAEALEDKLERAKGKSVVDYAFYGGLTK---GNLGKL 133

Query: 126 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK 185
           E        G K FM  S        +   ++E L   A     +LVHAE +      V 
Sbjct: 134 ELTERGVEAGFKGFMDDST----GALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVM 189

Query: 186 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSL 245
            E      R+    L  RPP  E +AI   L +A+ T       GA +HI H+S   S +
Sbjct: 190 NEG----LRAPELGLAGRPPIAEASAIARDLELARAT-------GARVHICHISTKES-V 237

Query: 246 DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI 305
           +L+  AK  G  +T E  PH+L    E+I D  T  K  PP+RD  ++E LWEAL DG I
Sbjct: 238 ELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGTLAKVNPPLRDEEDREALWEALKDGVI 297

Query: 306 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSER 365
           D+++SDH+P   E K L    F +A  GI  L+  LP+  +  +K  ++LE+L    S  
Sbjct: 298 DVIASDHAPHTLEEKRLP---FEEAPSGIPGLETALPLLLTLVKKGRLSLERLVELLSTN 354

Query: 366 PAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 425
           PA++ G   KGAI  G  ADLV+ +P+ E+ +     ++ K  + S + G  L G+V+AT
Sbjct: 355 PARIFGLPPKGAIEEGADADLVLVDPDEEWTIRA-EELYSKAKN-SPFEGFELKGRVVAT 412

Query: 426 ISRGNLVYKEGN 437
           I RG +VY++G 
Sbjct: 413 ILRGKVVYEDGE 424

Length = 430

>gnl|CDD|169193 PRK08044, PRK08044, allantoinase; Provisional

 Score =  299 bits (768), Expect = 1e-97
 Identities = 154/438 (35%), Positives = 232/438 (52%), Gaps = 37/438 (8%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           + +K G I +I  +          +V+D    V+ PG++D H H+ +PGR+ WEG+ +GT
Sbjct: 23  IAVKGGKIAAIGQD-----LGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGT 77

Query: 66  KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
           +AAA GGITT+I+MPLN  P+T+   +++LK DAA+ ++ +D    GGLV    YN   L
Sbjct: 78  RAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVS---YNLDRL 134

Query: 126 EALLNAGVLGLKSFMCPSGI----NDFPMTNASHIKEGLSVLARYKRPLLVHAEM----- 176
             L   GV+G K F+   G     NDF   N     +G   L    +P+LVH E      
Sbjct: 135 HELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICD 194

Query: 177 EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIV 236
           E G E   K E       +   Y+ +RP   E  AIR +L +AK         G  LH+ 
Sbjct: 195 ELGEE--AKREGRV----TAHDYVASRPVFTEVEAIRRVLYLAKVA-------GCRLHVC 241

Query: 237 HLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKL 296
           H+S +   ++ +  A+  G  +T E+CPHY     ++  +  T  KC+PPIRD  N++ +
Sbjct: 242 HIS-SPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGM 300

Query: 297 WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTL 355
           WE L +G ID L SDHSP  PE+K    GN ++AWGGI+ LQ  + V +    +K G++L
Sbjct: 301 WEKLFNGEIDCLVSDHSPCPPEMK---AGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSL 357

Query: 356 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 415
                  +   A + G   KG IA G  AD V  +P + + L N+  +  +H  +S Y+G
Sbjct: 358 PMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLKNED-LEYRH-KVSPYVG 415

Query: 416 RRLSGKVLATISRGNLVY 433
           R +  ++  TI RG+++Y
Sbjct: 416 RTIGARITKTILRGDVIY 433

Length = 449

>gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis

 Score =  229 bits (586), Expect = 2e-71
 Identities = 118/393 (30%), Positives = 177/393 (45%), Gaps = 35/393 (8%)

Query: 38  VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 97
           +I+PG+ID+H H  +PG T  E F SG++AAAAGG+TT++DMP N+ P T + E L  K+
Sbjct: 3   LILPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMP-NTKPPTTTAEALYEKL 61

Query: 98  DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 157
             A  +  VD G + G+      +   L+    AG    K FM  S  +          +
Sbjct: 62  RLAAAKSVVDYGLYFGVTGSE--DLEELDKAPPAGY---KIFMGDSTGDLL------DDE 110

Query: 158 EGL-SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 216
           E L  + A     +  HAE E     + K                 R       A    L
Sbjct: 111 ETLERIFAEGSVLVTFHAEDEDRLRENRKELKGESAHPRI------RDAEAAAVATARAL 164

Query: 217 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 276
            +A+         GA LHI H+S      + L   K     +TVE  PH+L    E+   
Sbjct: 165 KLARRH-------GARLHICHVSTP----EELKLIKKAKPGVTVEVTPHHLFLDVEDYDR 213

Query: 277 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 336
             T  K  PP+R   +++ L +AL DG ID+++SDH+P   E K      +  A  GI  
Sbjct: 214 LGTLGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEK---RKGYPAAPSGIPG 270

Query: 337 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE 396
           ++  LP+  +   K  ++L ++    S  PA++ G  +KG IA G  ADL V + + E  
Sbjct: 271 VETALPLMLTLVNKGILSLSRVVRLTSHNPARIFGIKNKGRIAEGYDADLTVVDLKEERT 330

Query: 397 LDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 429
           +      H K    + + G  ++G  + TI RG
Sbjct: 331 I-RAEEFHSKAG-WTPFEGFEVTGFPVMTIVRG 361

This group contains the archeal members of the DHOase family. Length = 361

>gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated

 Score =  221 bits (565), Expect = 1e-67
 Identities = 138/455 (30%), Positives = 221/455 (48%), Gaps = 82/455 (18%)

Query: 8   IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKA 67
           I +G I +I    +    ++  +V+D    V+ PGL+D+H HL +PG+ + E   +G++A
Sbjct: 24  IDDGKIAAIGENIE----AEGAEVIDATGLVVAPGLVDLHVHLREPGQEDKETIETGSRA 79

Query: 68  AAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV--------GFWGGLVPENA 119
           AAAGG TT++ MP N+ P   + E ++  +D A++   VDV        G  G  + E  
Sbjct: 80  AAAGGFTTVVAMP-NTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKGLAGEELTE-- 136

Query: 120 YNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKEGLSVLARYKRPL-LVHAEME 177
                  AL  AGV+           +D  P+ +A  ++  L     Y + L L+ A+  
Sbjct: 137 -----FGALKEAGVVAFS--------DDGIPVQDARLMRRAL----EYAKALDLLIAQHC 179

Query: 178 KGSERHVKLEDDTLDTRSYSTY--------------LKTRPPSWEEAAI-RELLTVAKDT 222
                    ED +L      T               L   P   EE  I R++L  A+ T
Sbjct: 180 ---------EDPSL------TEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLL-AEAT 223

Query: 223 RTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFK 282
                  GA +HI H+S A S ++L+  AK  G  +T E  PH+L  + E++   D  +K
Sbjct: 224 -------GARVHICHVSTAGS-VELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYK 275

Query: 283 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 342
             PP+R   ++E L E L DG ID +++DH+P   E K  +   F  A  GI+ L+  L 
Sbjct: 276 VNPPLRTEEDREALIEGLKDGTIDAIATDHAPHAREEKECE---FEAAPFGITGLETALS 332

Query: 343 VTWSYGRKYGV-TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH 401
           + ++   K G+  LEQL    +  PA++ G +  G +A G  ADLV+++PEAE+ +D + 
Sbjct: 333 LLYTTLVKTGLLDLEQLLEKMTINPARILG-LPAGPLAEGEPADLVIFDPEAEWTVDGE- 390

Query: 402 PVHMKHPSI-SAYLGRRLSGKVLATISRGNLVYKE 435
                     + ++G +L GKV+ TI  G +VY++
Sbjct: 391 --DFASKGKNTPFIGMKLKGKVVYTIVDGKIVYQD 423

Length = 423

>gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids

 Score =  216 bits (553), Expect = 7e-67
 Identities = 121/389 (31%), Positives = 191/389 (49%), Gaps = 54/389 (13%)

Query: 38  VIMPGLIDVHAHLDDPGRTEWEG-FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLK 96
           +++PG ID+H HL DPG T ++  F SG++AAAAGG+TT+IDMP N+ P  I    ++LK
Sbjct: 2   LVLPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMP-NTGPPPIDLPAIELK 60

Query: 97  VDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHI 156
           +  AE+  YVD  F  G+ P +  +   L+ L +AG+  LK FM       F + + + +
Sbjct: 61  IKLAEESSYVDFSFHAGIGPGDVTDE--LKKLFDAGINSLKVFMNYYFGELFDVDDGT-L 117

Query: 157 KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 216
                 +A    P++VHAE                                         
Sbjct: 118 MRTFLEIASRGGPVMVHAER--------------------------------------AA 139

Query: 217 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 276
            +A++        GA++HI H+S   + L+L+  AK  G  +T E CPH+L      +  
Sbjct: 140 QLAEEA-------GANVHIAHVSSGEA-LELIKFAKNKGVKVTCEVCPHHLFLDESMLRL 191

Query: 277 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 336
                K  PP+R   ++E LWE + +G ID ++SDH+P   E K     +  KA  G   
Sbjct: 192 NGAWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPG 250

Query: 337 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE 396
           L+  LP+  + G K G++LE L    SE PA++ G   KG IA+G  ADLV+ +P+ E++
Sbjct: 251 LETRLPILLTEGVKRGLSLETLVEILSENPARIFGLYPKGTIAVGYDADLVIVDPKKEWK 310

Query: 397 LDNDHPVHMKHPSISAYLGRRLSGKVLAT 425
           +  +          + + G  ++GK ++T
Sbjct: 311 VTAEE--IESKADWTPFEGMEVTGKPVST 337

Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. Length = 337

>gnl|CDD|238642 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis

 Score =  212 bits (543), Expect = 6e-65
 Identities = 131/400 (32%), Positives = 199/400 (49%), Gaps = 28/400 (7%)

Query: 28  TGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPST 87
             +V+D    ++ PGL+D+H HL +PG    E   SG KAAAAGG TT++ MP N++P  
Sbjct: 1   DAEVIDAEGKILAPGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMP-NTNPVI 59

Query: 88  ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA-SALEALLNAGVLGLKSFMCPSGIN 146
            +   ++L  + A+    V V   G L         + +  LL AG +G          +
Sbjct: 60  DNPAVVELLKNRAKDVGIVRVLPIGALTKGLKGEELTEIGELLEAGAVGF-------SDD 112

Query: 147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS 206
             P+ +A  ++  L   A    P++VH E +        + +  + +R     L   PP 
Sbjct: 113 GKPIQDAELLRRALEYAAMLDLPIIVHPE-DPSLAGGGVMNEGKVASRLG---LPGIPPE 168

Query: 207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 266
            E   +   L +A+ T       GA +H  HLS A S L+L+ +AK  G  +T E  PH+
Sbjct: 169 AETIMVARDLELAEAT-------GARVHFQHLSTARS-LELIRKAKAKGLPVTAEVTPHH 220

Query: 267 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGN 326
           L    E +   DT  K  PP+R   ++E L EAL DG ID ++SDH+P   E K L    
Sbjct: 221 LLLDDEALESYDTNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDLP--- 277

Query: 327 FLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASWWSERPAKLAGQVSKGAIAIGNHAD 385
           F +A  GI  L+  LP+ W+   K G+ TL  L    S  PAK+ G +  G + +G  AD
Sbjct: 278 FAEAPPGIIGLETALPLLWTLLVKGGLLTLPDLIRALSTNPAKILG-LPPGRLEVGAPAD 336

Query: 386 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 425
           LV+++P+AE+ +D +     K    + + G++L G+VLAT
Sbjct: 337 LVLFDPDAEWIVDEET-FRSK-SKNTPFDGQKLKGRVLAT 374

This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. Length = 374

>gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex type

 Score =  213 bits (545), Expect = 9e-65
 Identities = 136/408 (33%), Positives = 200/408 (49%), Gaps = 28/408 (6%)

Query: 31  VVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST 90
           V+D    +++PG ID+H HL DPG    E   SG+KAAA GG TT+ DMP N+ P   + 
Sbjct: 29  VIDAKGLLVLPGFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMP-NTKPPIDTP 87

Query: 91  ETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEA--LLNAGVLGLKSFMCPSGI-ND 147
           ETL+ K+   +K   VDV  +GG V +        EA  L  AG +G       S + + 
Sbjct: 88  ETLEWKLQRLKKVSLVDVHLYGG-VTQGNQGKELTEAYELKEAGAVGRMFTDDGSEVQDI 146

Query: 148 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 207
             M  A        V      P+ +HAE        V  E       +    L  RPP  
Sbjct: 147 LSMRRALEYAAIAGV------PIALHAEDPDLIYGGVMHE----GPSAAQLGLPARPPEA 196

Query: 208 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 267
           EE A+  LL +AK         G  +HI H+S    SL+L+++AK+ G  IT E  PH+L
Sbjct: 197 EEVAVARLLELAKHA-------GCPVHICHISTK-ESLELIVKAKSQGIKITAEVTPHHL 248

Query: 268 AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 327
             S E++   D   K  PP+R+  ++  L E L DG ID++++DH+P   E K      F
Sbjct: 249 LLSEEDVARLDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEEKTK---EF 305

Query: 328 LKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLV 387
             A  GI  L+  LP+      K  ++L+ L    S  PA++ G   KG +  GN AD+ 
Sbjct: 306 AAAPPGIPGLETALPLLLQLLVKGLISLKDLIRMLSINPARIFGLPDKGTLEEGNPADIT 365

Query: 388 VWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435
           V++ + E+ ++ +   + K    + + G  L GK +ATI RG +VY++
Sbjct: 366 VFDLKKEWTINAET-FYSK-AKNTPFEGMSLKGKPIATILRGKVVYED 411

In contrast to the homodimeric type of dihydroorotase found in E. coli, this class tends to appear in a large, multifunctional complex with aspartate transcarbamoylase. Homologous domains appear in multifunctional proteins of higher eukaryotes. In some species, including Pseudomonas putida and P. aeruginosa, this protein is inactive but is required as a non-catalytic subunit of aspartate transcarbamoylase (ATCase). In these species, a second, active dihydroorotase is also present. The seed for this model does not include any example of the dihydroorotase domain of eukaryotic multidomain pyrimidine synthesis proteins. All proteins described by This model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 411

>gnl|CDD|238639 cd01314, D-HYD, D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin

 Score =  212 bits (541), Expect = 8e-64
 Identities = 128/442 (28%), Positives = 204/442 (46%), Gaps = 31/442 (7%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPS 63
           + I++G I++I    + P   +    +D     ++PG ID H HL+ P  G    + F S
Sbjct: 19  ILIEDGKIVAIGPNLEAPGGVEV---IDATGKYVLPGGIDPHTHLELPFMGTVTADDFES 75

Query: 64  GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
           GT+AAAAGG TT+ID  + +   ++  E ++     A+ +  +D GF   +         
Sbjct: 76  GTRAAAAGGTTTIIDFAIPNKGQSL-LEAVEKWRGKADGKSVIDYGFHMIITDWTDSVIE 134

Query: 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS--- 180
            L  L+  G+   K FM   G+    M +   + + L         ++VHAE   G    
Sbjct: 135 ELPELVKKGISSFKVFMAYKGLL---MVDDEELLDVLKRAKELGALVMVHAE--NGDVIA 189

Query: 181 ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 240
           E   KL         Y     +RPP  E  A    + +A+         GA L+IVH+S 
Sbjct: 190 ELQKKLLAQGKTGPEYHAL--SRPPEVEAEATARAIRLAELA-------GAPLYIVHVS- 239

Query: 241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT---RFKCAPPIRDAANKEKLW 297
           +  + D +  A+  G  +  ETCP YL     +         ++ C+PP+R   ++E LW
Sbjct: 240 SKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALW 299

Query: 298 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLE 356
           + L  G +  + SDH P     K   + +F K   G+  ++  +P+ WS G   G +TLE
Sbjct: 300 DGLSSGTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLE 359

Query: 357 QLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 415
           +     S  PAK+ G    KG IA+G+ ADLV+W+P AE  +  D   H      + + G
Sbjct: 360 KFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAEKTISADTH-HHN-VDYNIFEG 417

Query: 416 RRLSGKVLATISRGNLVYKEGN 437
            ++ G  + TISRG +V ++G 
Sbjct: 418 MKVKGWPVVTISRGKVVVEDGE 439

The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. Length = 447

>gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional

 Score =  187 bits (476), Expect = 2e-54
 Identities = 132/391 (33%), Positives = 195/391 (49%), Gaps = 30/391 (7%)

Query: 4   RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 63
           R V I  G I ++  + D    S + +V+D    +++PG IDVH H  +PG T  E + +
Sbjct: 20  RDVRIDGGKITAVGKDLD---GSSSEEVIDARGMLLLPGGIDVHVHFREPGYTHKETWYT 76

Query: 64  GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
           G+++AAAGG+TT++D P N+DP T+  E+   K + A ++  VD G  GG+      N  
Sbjct: 77  GSRSAAAGGVTTVVDQP-NTDPPTVDGESFDEKAELAARKSIVDFGINGGVTG----NWD 131

Query: 124 ALEALLNAGVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 182
            LE+L   GV  L + FM  S      + +    +E L+  AR      VHAE E   + 
Sbjct: 132 PLESLWERGVFALGEIFMADS-TGGMGI-DEELFEEALAEAARLGVLATVHAEDEDLFDE 189

Query: 183 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS 242
             KL     D  ++S Y   RP + E AA+   L VA +T       GA +HI H+S   
Sbjct: 190 LAKLLKGDADADAWSAY---RPAAAEAAAVERALEVASET-------GARIHIAHIS-TP 238

Query: 243 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 302
             +D           IT E  PH+L  S  +     T  K  PP+R    +E LWE L D
Sbjct: 239 EGVDAARREG-----ITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKRREALWERLND 293

Query: 303 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWW 362
           G ID+++SDH+P   E K  D      A  G+  ++ +LP+  +  RK  + LE++    
Sbjct: 294 GTIDVVASDHAPHTREEKDAD---IWDAPSGVPGVETMLPLLLAAVRKNRLPLERVRDVT 350

Query: 363 SERPAKLAGQVSKGAIAIGNHADLVVWEPEA 393
           +  PA++ G   KG IA G  ADLV+ +P+A
Sbjct: 351 AANPARIFGLDGKGRIAEGYDADLVLVDPDA 381

Length = 443

>gnl|CDD|236240 PRK08323, PRK08323, phenylhydantoinase; Validated

 Score =  186 bits (474), Expect = 7e-54
 Identities = 121/438 (27%), Positives = 196/438 (44%), Gaps = 68/438 (15%)

Query: 30  QVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPST 87
           +V+D     +MPG ID H H++ P  G    + F +GT+AAA GG TT+ID  L      
Sbjct: 38  EVIDATGKYVMPGGIDPHTHMEMPFGGTVSSDDFETGTRAAACGGTTTIIDFALQP---- 93

Query: 88  ISTETLKLKVDA----AEKRIYVDVGFWGGL--VPENAYNASALEALLNAGVLGLKSFMC 141
              ++L+  ++A    A  +  +D GF   +    E   +   +  L+  G+   K FM 
Sbjct: 94  -KGQSLREALEAWHGKAAGKAVIDYGFHMIITDWNEVVLDE--MPELVEEGITSFKLFM- 149

Query: 142 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE------------MEKGSERHVKLEDD 189
                   M +   +   L   A      +VHAE            + +G          
Sbjct: 150 --AYKGALMLDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEG---------- 197

Query: 190 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLM 249
              T      L +RPP  E  A    + +A+         GA L+IVH+S    +L+ + 
Sbjct: 198 --KTGPEYHAL-SRPPEVEGEATNRAIMLAELA-------GAPLYIVHVS-CKEALEAIR 246

Query: 250 EAKTNGDSITVETCPHYLAFSAEEI--PDGDT--RFKCAPPIRDAANKEKLWEALMDGHI 305
            A+  G  +  ETCP YL     E   PD     ++  +PP+RD  +++ LW  L DG +
Sbjct: 247 RARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDL 306

Query: 306 DMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWS 363
            ++++DH P    + K L  G+F K   G   ++  +P+ +S G   G +TL +     S
Sbjct: 307 QVVATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTS 366

Query: 364 ERPAKLAG---QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI--SAYLGRRL 418
             PAK+ G   +  KG IA+G  AD+V+W+P A   +         H ++  + Y G  +
Sbjct: 367 TNPAKIFGLYPR--KGTIAVGADADIVIWDPNATKTISAS----TLHSNVDYNPYEGFEV 420

Query: 419 SGKVLATISRGNLVYKEG 436
           +G  + T+SRG +V ++G
Sbjct: 421 TGWPVTTLSRGEVVVEDG 438

Length = 459

>gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated

 Score =  185 bits (472), Expect = 9e-54
 Identities = 133/466 (28%), Positives = 220/466 (47%), Gaps = 72/466 (15%)

Query: 3   KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 62
           +  + I++G I +I         +  G+V+D     ++PG+ID   H  +PG    E   
Sbjct: 22  RADIGIRDGRIAAIGD----LSGASAGEVIDCRGLHVLPGVIDSQVHFREPGLEHKEDLE 77

Query: 63  SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 122
           +G++AA  GG+T + +MP N++P T + E L  K+  A  R++ D  F+ G   +NA   
Sbjct: 78  TGSRAAVLGGVTAVFEMP-NTNPLTTTAEALADKLARARHRMHCDFAFYVGGTRDNADEL 136

Query: 123 SALEALLNAGVLGLKSFMCPSG----INDFPMTNASHIKEGL-SVLARYKRPLLVHAEME 177
           + LE L   G  G+K FM  S     + D          EGL  +L   +R    H+E E
Sbjct: 137 AELERL--PGCAGIKVFMGSSTGDLLVED---------DEGLRRILRNGRRRAAFHSEDE 185

Query: 178 K--GSERHVKLEDDTLDTRSYSTYLKTRPPSW--EEAAI---RELLTVAKDTRTDGPAEG 230
                 + +++E D       S++     P W  EEAA+   R L+ +A++T       G
Sbjct: 186 YRLRERKGLRVEGD------PSSH-----PVWRDEEAALLATRRLVRLARET-------G 227

Query: 231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG-DTRFKCAPPIRD 289
             +H++H+S A   +D L + K   D  TVE  PH+L  +A E  +   T  +  PPIRD
Sbjct: 228 RRIHVLHVSTA-EEIDFLADHK---DVATVEVTPHHLTLAAPECYERLGTLAQMNPPIRD 283

Query: 290 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW----GGISSLQFVLPVTW 345
           A +++ LW  +  G +D+L SDH+P   E K        K +     G++ +Q ++P+  
Sbjct: 284 ARHRDGLWRGVRQGVVDVLGSDHAPHTLEEK-------AKPYPASPSGMTGVQTLVPIML 336

Query: 346 SY---GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHP 402
            +   GR   ++LE+     S  PA++ G   KG IA+G  AD  + + +    + N+  
Sbjct: 337 DHVNAGR---LSLERFVDLTSAGPARIFGIAGKGRIAVGYDADFTIVDLKRRETITNE-- 391

Query: 403 VHMKHPS-ISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 447
             +      + Y G+ ++G  + TI RG  V  +G       G P+
Sbjct: 392 -WIASRCGWTPYDGKEVTGWPVGTIVRGQRVMWDGELVGPPTGEPV 436

Length = 444

>gnl|CDD|233694 TIGR02033, D-hydantoinase, D-hydantoinase

 Score =  177 bits (451), Expect = 1e-50
 Identities = 119/422 (28%), Positives = 196/422 (46%), Gaps = 34/422 (8%)

Query: 30  QVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDM--PLNSDP 85
           +V+D     ++PG IDVH HL+ P  G    + F +GTKAAAAGG TT+ID   P   + 
Sbjct: 40  EVIDATGKYVLPGGIDVHTHLEMPFGGTVTADDFFTGTKAAAAGGTTTIIDFALPSKGES 99

Query: 86  STISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI 145
            T + ET   K   AE +  +D GF   +   N +        +     G+ SF      
Sbjct: 100 LTEALETWHEK---AEGKSVIDYGFHMMITDWNDHVLEEHIPEVVEE--GITSFKVFMAY 154

Query: 146 NDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLK 201
            +  M +   + E L         L VHAE    + +   R +       +  + S    
Sbjct: 155 KNLLMVDDEELFEILKRAKELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALS---- 210

Query: 202 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 261
            RPP  E  A+   + +A     D P     L++VH+S A + +D + EA+  G  +  E
Sbjct: 211 -RPPESEAEAVARAIALAA--LADAP-----LYVVHVSTADA-VDEIAEAREKGQPVYGE 261

Query: 262 TCPHYLAFSAE--EIPDGD-TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVP 317
           TCP YL       + P  +  ++ C+PP+R+  +++ LW AL  G +  + SDH P    
Sbjct: 262 TCPQYLVLDDTAYDKPGFEGAKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPFNFA 321

Query: 318 ELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SK 375
           + K + + +F K   G   ++  + + +  G   G +TLE+     S  PAK+      K
Sbjct: 322 QKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVAKGRITLEKFVELTSTNPAKIFNMYPQK 381

Query: 376 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435
           G IA+G+ AD+V+W+P     +  +   H  +   + + G ++ G V++ +SRG +V ++
Sbjct: 382 GTIAVGSDADIVIWDPNRTTVISAET--HHDNADYNPFEGFKVQGAVVSVLSRGRVVVED 439

Query: 436 GN 437
           G 
Sbjct: 440 GQ 441

This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. Length = 454

>gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional

 Score =  167 bits (426), Expect = 3e-47
 Identities = 123/457 (26%), Positives = 198/457 (43%), Gaps = 61/457 (13%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           V +++G I++I  E      +    V+D     ++PG+ID   H  +PG    E   + +
Sbjct: 24  VLVEDGKIVAIAPEIS---ATAVDTVIDAEGLTLLPGVIDPQVHFREPGLEHKEDLFTAS 80

Query: 66  KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
           +A A GG+T+ ++MP N+ P T +   L  K+  A ++  V+ GF+ G  P+N      L
Sbjct: 81  RACAKGGVTSFLEMP-NTKPLTTTQAALDDKLARAAEKCVVNYGFFIGATPDN------L 133

Query: 126 EALLNA-GVLGLKSFMCPSGINDFPMTNASH-----IKEGL--SVLARYKRPLLVHAEME 177
             LL A    G+K FM            +SH      +E     + A   R + VHAE +
Sbjct: 134 PELLTANPTCGIKIFM-----------GSSHGPLLVDEEAALERIFAEGTRLIAVHAEDQ 182

Query: 178 KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI---RELLTVAKDTRTDGPAEGAHLH 234
                         D   +S          EEAA+   R  L ++K  +         LH
Sbjct: 183 ARIRARRAEFAGISDPADHSQIQD------EEAALLATRLALKLSKKYQR-------RLH 229

Query: 235 IVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKE 294
           I+HLS A    +LL + K +   +T E  P +L  + +      T  +  PP+R   + E
Sbjct: 230 ILHLSTAIE-AELLRQDKPS--WVTAEVTPQHLLLNTDAYERIGTLAQMNPPLRSPEDNE 286

Query: 295 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVT 354
            LW+AL DG ID +++DH+P   E K      +  +  G+  ++  LP+  +   +   T
Sbjct: 287 ALWQALRDGVIDFIATDHAPHTLEEKAQP---YPNSPSGMPGVETSLPLMLTAAMRGKCT 343

Query: 355 LEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVH----MKHPSI 410
           + Q+  W S   A+  G  +KG IA G  ADLV+       +L+   PV     +     
Sbjct: 344 VAQVVRWMSTAVARAYGIPNKGRIAPGYDADLVL------VDLNTYRPVRREELLTKCGW 397

Query: 411 SAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 447
           S + G  L+G  + TI  G +V+  G       G  +
Sbjct: 398 SPFEGWNLTGWPVTTIVGGQIVFDRGQVNTEVRGQAL 434

Length = 438

>gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed

 Score =  161 bits (409), Expect = 1e-44
 Identities = 123/465 (26%), Positives = 188/465 (40%), Gaps = 69/465 (14%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           V I+ G I  I S            V+D     ++PG+ID   H  +PG T      S +
Sbjct: 22  VLIENGRIAKIASSIS---AKSADTVIDAAGRYLLPGMIDDQVHFREPGLTHKGDIASES 78

Query: 66  KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
           +AA AGGIT+ ++MP N++P T + E L+ K   A +R   +  F+ G    +  N   +
Sbjct: 79  RAAVAGGITSFMEMP-NTNPPTTTLEALEAKYQIAAQRSLANYSFYFG-ATND--NLDEI 134

Query: 126 EALLNAGVLGLKSFMCPSGIN---DFPMTNASHIKEGLSVLARYKR----PLLVHAEME- 177
           + L    V G+K FM  S  N   D P             L R  R     +  H E   
Sbjct: 135 KRLDPKRVCGVKVFMGASTGNMLVDNP-----------ETLERIFRDAPTLIATHCEDTP 183

Query: 178 ---KGSERHVKLEDDTLDT------RSYSTYLKTRPPSWEEAAIR------ELLTVAKDT 222
                  ++ +   D +        RS             EA  +       L   AK  
Sbjct: 184 TIKANLAKYKEKYGDDIPAEMHPLIRS------------AEACYKSSSLAVSL---AKKH 228

Query: 223 RTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFK 282
                  G  LH++H+S A   L L          IT E C H+L F   +        K
Sbjct: 229 -------GTRLHVLHISTAKE-LSLFENGPLAEKRITAEVCVHHLWFDDSDYARLGNLIK 280

Query: 283 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 342
           C P I+ A+++E L +AL D  ID++++DH+P   E K   +G + +A  G+  +Q  LP
Sbjct: 281 CNPAIKTASDREALRQALADDRIDVIATDHAPHTWEEK---QGPYFQAPSGLPLVQHALP 337

Query: 343 VTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHP 402
                  +  ++LE++    S  PA L     +G I  G  ADLV+ +  + + +  +  
Sbjct: 338 ALLELVHEGKLSLEKVVEKTSHAPAILFDIKERGFIREGYWADLVLVDLNSPWTVTKE-N 396

Query: 403 VHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 447
           +  K    S + GR    +V  T   G LVY  G    +  G  +
Sbjct: 397 ILYK-CGWSPFEGRTFRSRVATTFVNGQLVYHNGQLVESCRGQRL 440

Length = 444

>gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional

 Score =  156 bits (396), Expect = 1e-42
 Identities = 125/451 (27%), Positives = 201/451 (44%), Gaps = 57/451 (12%)

Query: 30  QVVDYGEAVIMPGLIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPS 86
           + +D    +++PG +D H H+D P   G    + F +GT +AA GG TT+I         
Sbjct: 43  REIDATGRLVLPGGVDSHCHIDQPSGDGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQ 102

Query: 87  TISTETLKLKVDAAEKRIYVDVGFWGGLV---PENAYNASALEALLNAGVLGLKSFMCPS 143
           ++  E ++     A  +  +D  F   L+   P        L AL+  G    K FM   
Sbjct: 103 SLR-EAVEDYHRRAAGKAVIDYAF--HLIVADPTEEVLTEELPALIAQGYTSFKVFMTYD 159

Query: 144 G--INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST--- 198
              ++D  +       + L+V  R+   ++VHAE    +   +      L     +    
Sbjct: 160 DLKLDDRQIL------DVLAVARRHGAMVMVHAE----NHDMIAWLTKRLLAAGLTAPKY 209

Query: 199 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSI 258
           +  +RP   E  A    + +A+    D P     + IVH+S   +  + +  A+  G  I
Sbjct: 210 HAISRPMLAEREATHRAIALAE--LVDVP-----ILIVHVSGREA-AEQIRRARGRGLKI 261

Query: 259 TVETCPHYLAFSAEEIPDGD----TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP 314
             ETCP YL  +AE++ D       ++ C+PP RD AN+E +W  L DG  ++ SSDH+P
Sbjct: 262 FAETCPQYLFLTAEDL-DRPGMEGAKYICSPPPRDKANQEAIWNGLADGTFEVFSSDHAP 320

Query: 315 ---TVPELKLL--DEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAK 368
                 + KL      +F     GI  ++  LP+ +S G   G ++L +  +  S  PAK
Sbjct: 321 FRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAK 380

Query: 369 LAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI--SAYLGRRLSGKVLAT 425
           L G    KGAIAIG  AD+ +W+P+ E  + N       H +   + Y G R++G  +  
Sbjct: 381 LYGLYPRKGAIAIGADADIAIWDPDREVTITNA----DLHHAADYTPYEGMRVTGWPVTV 436

Query: 426 ISRGNLVYKEGN-HAPA------ACGSPILA 449
           +SRG +V ++G   A        A   P  A
Sbjct: 437 LSRGRVVVEDGELVAERGSGQFLARSLPDRA 467

Length = 477

>gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional

 Score =  147 bits (373), Expect = 5e-40
 Identities = 118/431 (27%), Positives = 188/431 (43%), Gaps = 60/431 (13%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           + I+ G I  I       R+ K  +V+     +I+PGLIDVH HL D   +  E   SGT
Sbjct: 17  IGIENGRISKI-----SLRDLKGKEVIKVKGGIILPGLIDVHVHLRDFEESYKETIESGT 71

Query: 66  KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
           KAA  GGIT + DMP N+ P  +  +T + ++  AEK+ Y D      L+  N   A  +
Sbjct: 72  KAALHGGITLVFDMP-NTKPPIMDEKTYEKRMRIAEKKSYADY-ALNFLIAGNCEKAEEI 129

Query: 126 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK 185
           +A         K FM  S       T     +      A     + VHAE          
Sbjct: 130 KADFY------KIFMGAS-------TGGIFSENFEVDYACAPGIVSVHAE---------- 166

Query: 186 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSL 245
                 D      + + RPP  E  AI   L   K  +         LHI H+S     L
Sbjct: 167 ------DPELIREFPE-RPPEAEVVAIERALEAGKKLKKP-------LHICHISTK-DGL 211

Query: 246 DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI 305
            L++++  N   ++ E  PH+L  + ++        K  PP+R   +++ LWE      I
Sbjct: 212 KLILKS--NLPWVSFEVTPHHLFLTRKDYERNP-LLKVYPPLRSEEDRKALWENF--SKI 266

Query: 306 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSER 365
            +++SDH+P   E K  + G       GI  L+  +P+      K  ++L  +     + 
Sbjct: 267 PIIASDHAPHTLEDK--EAGA-----AGIPGLETEVPLLLDAANKGMISLFDIVEKMHDN 319

Query: 366 PAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 425
           PA++ G  + G I  GN+A+  V++ + E+ +  +  ++ K    + Y G +L GKV+ T
Sbjct: 320 PARIFGIKNYG-IEEGNYANFAVFDMKKEWTIKAEE-LYTK-AGWTPYEGFKLKGKVIMT 376

Query: 426 ISRGNLVYKEG 436
           I RG +V ++ 
Sbjct: 377 ILRGEVVMEDD 387

Length = 398

>gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional

 Score =  137 bits (347), Expect = 3e-36
 Identities = 106/405 (26%), Positives = 175/405 (43%), Gaps = 56/405 (13%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
            +E+++G I SI  ++D     K        +  I+P   D+H H   PG TE E F +G
Sbjct: 17  EIEVEDGKIKSI--KKDAGNIGKK-----ELKGAILPAATDIHVHFRTPGETEKEDFSTG 69

Query: 65  TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
           T +A  GG T ++DMP N++           K+     + YVD   +      NA     
Sbjct: 70  TLSAIFGGTTFIMDMP-NNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNA----- 123

Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG-LSVLARYKRPLLVHAEMEKGSERH 183
              +L+   +GLK +M  +       TN + I+ G +  +     P+  HAE+ +   +H
Sbjct: 124 --LILDERSIGLKVYMGGT-----TNTNGTDIEGGEIKKINEANIPVFFHAELSECLRKH 176

Query: 184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 243
                   ++++   +   RP   E  A++ +  +   T+           I H+S    
Sbjct: 177 ------QFESKNLRDHDLARPIECEIKAVKYVKNLDLKTK----------IIAHVSSIDV 220

Query: 244 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 303
               L E             PH+L    +++P G +  K  PP+RD   +E+L E  + G
Sbjct: 221 IGRFLREVT-----------PHHL-LLNDDMPLG-SYGKVNPPLRDRWTQERLLEEYISG 267

Query: 304 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWS 363
             D+LSSDH+P   E    D+  F  A  GI  ++  +P+  +  +K  + L+ L     
Sbjct: 268 RFDILSSDHAPHTEE----DKQEFEYAKSGIIGVETRVPLFLALVKKKILPLDVLYKTAI 323

Query: 364 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHP 408
           ERPA L G + KG I  G  AD + ++     ++ ND  +H K P
Sbjct: 324 ERPASLFG-IKKGKIEEGYDADFMAFDFTNIKKI-NDKRLHSKCP 366

Length = 409

>gnl|CDD|234738 PRK00369, pyrC, dihydroorotase; Provisional

 Score =  122 bits (308), Expect = 6e-31
 Identities = 110/442 (24%), Positives = 175/442 (39%), Gaps = 85/442 (19%)

Query: 10  EGNIISIVSEEDWPRNSKTGQ-----VVDYGE-AVIMPGLIDVHAHLDDPGRTEWEGFPS 63
              I  I    D  R  K  +      +D  +  +I+PG ID+H HL     +  E   S
Sbjct: 12  GKEIKEICINFD--RRIKEIKSRCKPDLDLPQGTLILPGAIDLHVHLRGLKLSYKEDVAS 69

Query: 64  GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
           GT  AA GG+T + DMP N+ P   + E +  K+   E    VD   + G V ++     
Sbjct: 70  GTSEAAYGGVTLVADMP-NTIPPLNTPEAITEKLAELEYYSRVDYFVYSG-VTKD----- 122

Query: 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 183
             E +    + G K F  P  +           +E   VL + ++  ++H E+       
Sbjct: 123 -PEKVDKLPIAGYKIF--PEDLER---------EETFRVLLKSRKLKILHPEV------P 164

Query: 184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 243
           + L+ +           K R   W E A    +            +  ++HI H S+  +
Sbjct: 165 LALKSNR----------KLRRNCWYEIAALYYVK-----------DYQNVHITHASNPRT 203

Query: 244 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 303
               +  AK  G   TV+  PH+L  + E     D   K  PPIRD   +  L +AL + 
Sbjct: 204 ----VRLAKELG--FTVDITPHHLLVNGE----KDCLTKVNPPIRDINERLWLLQALSE- 252

Query: 304 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWS 363
            +D ++SDH+P     KL     +     GI++L F  P  ++   K  +++++     S
Sbjct: 253 -VDAIASDHAPHSSFEKLQ---PYEVCPPGIAALSFTPPFIYTLVSKGILSIDRAVELIS 308

Query: 364 ERPAKLAGQVSKGAIAIGNHADLVV-----WEPEAEFELDNDHPVHMKHPSISAYLGRRL 418
             PA++ G +  G I  G  A+  V     W    ++    + P+           G  L
Sbjct: 309 TNPARILG-IPYGEIKEGYRANFTVIQFEDWRYSTKYSKVIETPL----------DGFEL 357

Query: 419 SGKVLATISRGNLVYKEGNHAP 440
              V ATI +G L Y EG   P
Sbjct: 358 KASVYATIVQGKLAYLEGEVFP 379

Length = 392

>gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional

 Score =  111 bits (279), Expect = 9e-27
 Identities = 110/442 (24%), Positives = 195/442 (44%), Gaps = 60/442 (13%)

Query: 8   IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKA 67
           +  G I +I      P      + +D    ++ PGL+D+ A L +PG        S   A
Sbjct: 25  VAAGKIAAIGQA---PAGFNADKTIDASGLIVCPGLVDLSARLREPGYEYKATLESEMAA 81

Query: 68  AAAGGITTLI-----DMPLNSDPSTISTETLKLKVDAAEK-RIY----VDVGFWGGLVPE 117
           A AGG+T+L+     D  L+ +P  +  E LK +     +  +Y    + VG  G ++ E
Sbjct: 82  AVAGGVTSLVCPPDTDPVLD-EPGLV--EMLKFRARNLNQAHVYPLGALTVGLKGEVLTE 138

Query: 118 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK-----RPLLV 172
                     L  AG +G           + P+ +   +   L   + +      RPL  
Sbjct: 139 MV-------ELTEAGCVGFSQ-------ANVPVVDTQVLLRALQYASTFGFTVWLRPLDA 184

Query: 173 HAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 232
              + +G           + +R     L   P + E  A+  +  + + T       GA 
Sbjct: 185 F--LGRGGVAA----SGAVASR---LGLSGVPVAAETIALHTIFELMRVT-------GAR 228

Query: 233 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAAN 292
           +H+  LS A+  + L+  AK  G  +T +   +++     +I   D++F+  PP+R   +
Sbjct: 229 VHLARLSSAAG-VALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPPLRSQRD 287

Query: 293 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG 352
           +E +  AL DG ID + SDH+P   + KLL    F +A  G + L+ +LP+T  +  +  
Sbjct: 288 REAIRAALADGTIDAICSDHTPVDDDEKLLP---FAEATPGATGLELLLPLTLKWADEAK 344

Query: 353 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI-S 411
           V L +  +  +  PA++ G +  G +A G  ADL V++P+A + ++   P  +K     +
Sbjct: 345 VPLARALARITSAPARVLG-LPAGRLAEGAPADLCVFDPDAHWRVE---PRALKSQGKNT 400

Query: 412 AYLGRRLSGKVLATISRGNLVY 433
            +LG  L G+V AT+  G + +
Sbjct: 401 PFLGYELPGRVRATLVAGQVAF 422

Length = 425

>gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase

 Score =  110 bits (276), Expect = 3e-26
 Identities = 114/445 (25%), Positives = 192/445 (43%), Gaps = 39/445 (8%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPS 63
           V +++G I+++      P + +   V+D     +MPG ID H HL  P  G    + F S
Sbjct: 25  VYVEDGIIVAVAPNLKVPDDVR---VIDATGKFVMPGGIDPHTHLAMPFMGTETIDDFFS 81

Query: 64  GTKAAAAGGITTLIDMPLNSDPSTIST-ETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 122
           G  AA AGG T  ID  +  + + ++  E  + K   AEK   +D GF   +   +   +
Sbjct: 82  GQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKK---AEKSC-MDYGFHMAITKWDDTVS 137

Query: 123 SALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----ME 177
             +E L+   G+   K FM   G     M     + EG           +VHAE    + 
Sbjct: 138 RDMETLVKEKGINSFKFFMAYKGS---LMVTDELLLEGFKRCKSLGALAMVHAENGDAVF 194

Query: 178 KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH 237
           +G +R ++L     +  + S     RPP  E  A    + +AK   T        L++VH
Sbjct: 195 EGQKRMIELGITGPEGHALS-----RPPLLEGEATARAIRLAKFVNTP-------LYVVH 242

Query: 238 LSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC----APPIRDAANK 293
           +  +  +++ +  A+ +G  +  E     L     ++ D D         +PPIR A + 
Sbjct: 243 VM-SIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHG 301

Query: 294 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG- 352
           + L  AL  G + ++ +DH P     K   + +F K   G++ ++  + + W    + G 
Sbjct: 302 KALQAALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQ 361

Query: 353 VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSIS 411
           ++        S   AK+      KGAI  G+ AD+++  P + F +      H      +
Sbjct: 362 ISPTDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNSTFTISAK--THHSRIDTN 419

Query: 412 AYLGRRLSGKVLATISRGNLVYKEG 436
            Y GRR  GKV  TIS+G +V++ G
Sbjct: 420 VYEGRRGKGKVEVTISQGRVVWENG 444

Length = 486

>gnl|CDD|236262 PRK08417, PRK08417, dihydroorotase; Provisional

 Score =  102 bits (255), Expect = 1e-23
 Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 18/194 (9%)

Query: 244 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 303
           SL+LL + K+ G+ +  E   H+L        + +T  K  PP+R   ++  L EAL +G
Sbjct: 208 SLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEG 267

Query: 304 HIDMLSSDHSPTVPELKLL--DEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLAS 360
            ID L+S HS      K L  DE  F     GI S+     + ++Y  K G +T  +L+ 
Sbjct: 268 KIDFLTSLHSAKSNSKKDLAFDEAAF-----GIDSICEYFSLCYTYLVKEGIITWSELSR 322

Query: 361 WWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG 420
           + S  PA+  G  + G I +G  ADLV+++P     +D+         + S Y G  L G
Sbjct: 323 FTSYNPAQFLGL-NSGEIEVGKEADLVLFDPNESTIIDD---------NFSLYSGDELYG 372

Query: 421 KVLATISRGNLVYK 434
           K+ A I +G L  +
Sbjct: 373 KIEAVIIKGKLYLE 386

Length = 386

>gnl|CDD|236002 PRK07369, PRK07369, dihydroorotase; Provisional

 Score =  101 bits (255), Expect = 1e-23
 Identities = 109/423 (25%), Positives = 187/423 (44%), Gaps = 33/423 (7%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           V I++G I +I  E          Q++D    ++ PGL+D+++H  +PG  E E   S  
Sbjct: 24  VLIEDGKIQAI--EPHIDPIPPDTQIIDASGLILGPGLVDLYSHSGEPGFEERETLASLA 81

Query: 66  KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA-SA 124
            AAAAGG T +  +P ++ P   +  TL      A++   V + FWG L         + 
Sbjct: 82  AAAAAGGFTRVAILP-DTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQGKQLTE 140

Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 184
           L  L  AGV+G          +  P+ N + ++  L  L    +P+ +       +   V
Sbjct: 141 LAELAAAGVVGFT--------DGQPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNGV 192

Query: 185 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 244
             E       +    L   P S E  A+  LL +     T        +H++ +S A S 
Sbjct: 193 MREGLL----ALRLGLPGDPASAETTALAALLELVAAIGTP-------VHLMRISTARS- 240

Query: 245 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 304
           ++L+ +AK  G  IT  T   +L    E +   D   +  PP+ + ++++ L E +  G 
Sbjct: 241 VELIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGV 300

Query: 305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW-SYGRKYGVTLEQLASWWS 363
           ID ++ DH+P   E K +    F +A  G   L+  LP+ W +      ++  QL    S
Sbjct: 301 IDAIAIDHAPYTYEEKTV---AFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALS 357

Query: 364 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI-SAYLGRRLSGKV 422
             PA+  GQ    ++A G  A+L++++P+  + +       +   S  + +LG+ L G+V
Sbjct: 358 TNPARCLGQEPP-SLAPGQPAELILFDPQKTWTVSAQ---TLHSLSRNTPWLGQTLKGRV 413

Query: 423 LAT 425
           L T
Sbjct: 414 LQT 416

Length = 418

>gnl|CDD|238641 cd01316, CAD_DHOase, The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis

 Score = 97.1 bits (242), Expect = 3e-22
 Identities = 83/283 (29%), Positives = 130/283 (45%), Gaps = 64/283 (22%)

Query: 38  VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 97
           + +PGLIDVH HL +PG T  E F SGTKAA AGG T +  MP N++PS +   +LKL  
Sbjct: 3   IRLPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMP-NTNPSIVDVASLKLVQ 61

Query: 98  DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 157
             A+ +   D  F  G    NA         L +  +GLK ++     N+   T ++ I 
Sbjct: 62  SLAQAKARCDYAFSIGATSTNAATVGE----LASEAVGLKFYL-----NE---TFSTLIL 109

Query: 158 EGLSVLARY------KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 211
           + ++  A +       +P++ HA+                     S  L         AA
Sbjct: 110 DKITAWASHFNAWPSTKPIVTHAK---------------------SQTL---------AA 139

Query: 212 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 271
           +  LL  +   R         +HI H+S     ++L+  AK  G  +T E  PH+L  S 
Sbjct: 140 V--LLLASLHNR--------SIHICHVSSKEE-INLIRLAKARGLKVTCEVSPHHLFLSQ 188

Query: 272 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP 314
           +++P G  +++  P +    ++E LWE L   +ID  ++DH+P
Sbjct: 189 DDLPRG--QYEVRPFLPTREDQEALWENL--DYIDCFATDHAP 227

Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate. Length = 344

>gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated

 Score = 70.4 bits (173), Expect = 4e-13
 Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 9/206 (4%)

Query: 230 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 289
               H   +S A S  + L  AK  G  +T     ++L+ +  +I +  T FK +PP+R 
Sbjct: 231 RGRYHAAQISCAES-AEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRT 289

Query: 290 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 349
             ++  + EA+  G ID++ S H P   + K L    F +A  G   L+ +L        
Sbjct: 290 EDDRVAMVEAVASGTIDIIVSSHDPQDVDTKRLP---FSEAAAGAIGLETLLAAALRLYH 346

Query: 350 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPS 409
              V L +L    S RPA++ G +  G +  G  AD++V + +  + +D   P  +K  S
Sbjct: 347 NGEVPLLRLIEALSTRPAEIFG-LPAGTLKPGAPADIIVIDLDEPWVVD---PEDLKSRS 402

Query: 410 I-SAYLGRRLSGKVLATISRGNLVYK 434
             + +   R  G+V+ TI  G  VY+
Sbjct: 403 KNTPFEEARFQGRVVRTIVAGKTVYE 428

Length = 429

>gnl|CDD|222250 pfam13594, Amidohydro_5, Amidohydrolase

 Score = 60.4 bits (147), Expect = 6e-12
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 8  IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKA 67
          I++G I +I  ++         +V+D     ++PGLID+H HL        E   +G  A
Sbjct: 3  IEDGKIAAIGGDDLPDA---EAEVIDAEGKYVLPGLIDMHVHLG--EEPGRETLETGAAA 57

Query: 68 AAAGGITTL 76
          A AGG+TT+
Sbjct: 58 ALAGGVTTV 66

This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 66

>gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 69/362 (19%), Positives = 114/362 (31%), Gaps = 64/362 (17%)

Query: 38  VIMPGLIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLK 94
           +++PGLID H HL+ P   G   +E   +G KA    G TT++D P +++ S    + + 
Sbjct: 1   IVLPGLIDAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDTPTSANTSIPLRKEIM 60

Query: 95  LKVDAAEKR-----IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFP 149
             + AA K      + +     G           A E         L   +         
Sbjct: 61  EGLAAAPKLEPNVELLLKGSVGGRAELGEVVIDGAGEEAKAGA--DLIKVIE--DGGKTA 116

Query: 150 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 209
                     L  LA +  P + H  ++   E   +  ++                S E 
Sbjct: 117 KAIDGV----LPALAPHDPPTVSHEGLKNEVE-LAEETEEAEKLGLLVHIH-AAEASGEV 170

Query: 210 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 269
            AI   + +               H +HL D +     L++   +G +            
Sbjct: 171 NAILGGVDLLA-------------HCLHLDDEAI---ELLKEAGSGIAHCP--------L 206

Query: 270 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLK 329
           S E I     RF                 +     I  L S  +      +L D+G  + 
Sbjct: 207 SNESILHRGGRF--------------SLMSGDAQGIGELGSGGARLA---RLADKGGVVG 249

Query: 330 AWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVV 388
                + L         Y    G++  +     +  PAK  G     G+I +G  ADLVV
Sbjct: 250 LGTDGAGLNGKD----FYLDPDGLSPIEALRMATINPAKALGLDDRVGSIEVGKDADLVV 305

Query: 389 WE 390
            +
Sbjct: 306 VD 307

This family of enzymes are a a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 307

>gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

 Score = 59.7 bits (144), Expect = 5e-10
 Identities = 56/309 (18%), Positives = 87/309 (28%), Gaps = 89/309 (28%)

Query: 43  LIDVHAHLDDPGRTEWEGFP------------------SGTKAAAAGGITTLIDMPLNSD 84
            ID H HLD                                +A  AGG+TT++DM  ++ 
Sbjct: 1   FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMG-STP 59

Query: 85  PSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS--------ALEALLNAGVLGL 136
           P T +   ++   +AA     + V    G+    A             L   L  G +GL
Sbjct: 60  PPTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGL 119

Query: 137 KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 196
           K     +        +   ++  L    +   P+++HA                      
Sbjct: 120 KLAGPYT----ATGLSDESLRRVLEEARKLGLPVVIHAG--------------------- 154

Query: 197 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS-SLDLLMEAKTNG 255
                         A+ +L+             G  + I H+S      L+LL EA    
Sbjct: 155 -------ELPDPTRALEDLV--------ALLRLGGRVVIGHVSHLDPELLELLKEAG--- 196

Query: 256 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 315
             +++E CP                       RD    E L   L  G    L +D  P 
Sbjct: 197 --VSLEVCPLSNYLLG----------------RDGEGAEALRRLLELGIRVTLGTDGPPH 238

Query: 316 VPELKLLDE 324
                LL  
Sbjct: 239 PLGTDLLAL 247

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. Length = 275

>gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 31  VVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDP 85
           +VD     + PGL+D    + +PG    E   S ++AAAAGG+T++I MP ++DP
Sbjct: 50  IVDCAGKAVAPGLVDARVFVGEPGAEHRETIASASRAAAAGGVTSIIMMP-DTDP 103

Length = 429

>gnl|CDD|221936 pfam13147, Amidohydro_4, Amidohydrolase

 Score = 54.5 bits (130), Expect = 4e-08
 Identities = 67/363 (18%), Positives = 104/363 (28%), Gaps = 67/363 (18%)

Query: 33  DYGEAVIMPGLIDVHAHLDDPGRTE-----WEGFPSGTKAAAAGGITTLIDMPLNSDPST 87
           D    +++PGL+D+H H     ++E          +G  A A  G+T+ +          
Sbjct: 1   DAKGRLVLPGLVDLHVHGRPLDKSEDGGPYRAEAEAGLAALAGAGVTSALLDGGWEPELL 60

Query: 88  ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYN-ASALEALLNAGVLGLKSFMCPSGIN 146
                          R+ V V   G +   N      AL+ L+        +    S ++
Sbjct: 61  T--------------RLLVRVLVDGLIGLGNLGATLEALKRLVELLEAEGVALPLASVLD 106

Query: 147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS 206
                       GL  L R                 H   +            L      
Sbjct: 107 G----------PGLEALLRE-----AKKAGLILLVGHAPADLGDGAVEKGLDALFLLALG 151

Query: 207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 266
            E A    L           P  G  LH++  +       L+        +         
Sbjct: 152 HEVAEDLHLA------EILDPGAGLGLHVIAAAADLLLEGLVA-------AHAGGLAVVP 198

Query: 267 LAFSAEEIPDGDTRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEG 325
           L     +       FK  PP+R    ++E L E L  G    L SDH+P  P        
Sbjct: 199 LELLLRDAAAAGVAFKVLPPLRLRERDREALRELLAAGVPVALGSDHAPDSP-------- 250

Query: 326 NFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK-GAIAIGNHA 384
                    +    +L          G+T E+     +  PA+L G     G + +G  A
Sbjct: 251 ---------AGPGDLLEAALFLAALAGLTPEEALRLATLNPARLLGLGDDLGRLEVGKRA 301

Query: 385 DLV 387
           DLV
Sbjct: 302 DLV 304

This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 304

>gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 92/445 (20%), Positives = 146/445 (32%), Gaps = 148/445 (33%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           V I++G I +I             +V+D    V+ PG IDVH H D  G+  W+      
Sbjct: 22  VGIRDGRIAAIGPILSTSAR----EVIDAAGLVVAPGFIDVHTHYD--GQVFWD---PDL 72

Query: 66  KAAAAGGITTLIDM-------PLNSD-----PSTISTETLKLK------------VDAAE 101
           + ++  G+TT++         P N D        +       +            +DA E
Sbjct: 73  RPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLDALE 132

Query: 102 KRIY-VDVGFWGGLVPENAYNASAL--------------------EALLNAGVLGLKSFM 140
            R   V+V     LV   A   + +                    EAL  AG LG+    
Sbjct: 133 ARPPAVNVAA---LVGHAALRRAVMGLDAREATEEELAKMRELLREAL-EAGALGI---- 184

Query: 141 CPSGINDFPMTNASHIKEGL----SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 196
                              L     V ARY      H          V+ E D++     
Sbjct: 185 ---STGLAYAPRLYAGTAELVALARVAARYGGVYQTH----------VRYEGDSILE--- 228

Query: 197 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS--------SLDLL 248
                         A+ ELL + ++T       G  +HI HL  A +         L L+
Sbjct: 229 --------------ALDELLRLGRET-------GRPVHISHLKSAGAPNWGKIDRLLALI 267

Query: 249 MEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 308
             A+  G  +T +  P Y A S ++                          +M   + M 
Sbjct: 268 EAARAEGLQVTADVYP-YGAGSEDD-----------------------VRRIMAHPVVMG 303

Query: 309 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAK 368
            SD                 +++G  +    VL   +   RK  ++LE+     +  PA+
Sbjct: 304 GSD--------GGALGKPHPRSYGDFT---RVLGH-YVRERK-LLSLEEAVRKMTGLPAR 350

Query: 369 LAGQVSKGAIAIGNHADLVVWEPEA 393
           + G   +G IA G  AD+VV++P+ 
Sbjct: 351 VFGLADRGRIAPGYRADIVVFDPDT 375

Length = 415

>gnl|CDD|223479 COG0402, SsnA, Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 79/470 (16%), Positives = 130/470 (27%), Gaps = 114/470 (24%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD------------ 52
            + I++G I++I +  +        +V+D    +++PG ++ H HLD             
Sbjct: 24  DLVIEDGKIVAIGANAE---GPPDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLADDLPL 80

Query: 53  ---PGRTEWEGFPSGTKA-------------AAAGGITTLIDMPLNSDPS--TISTETLK 94
                R  W                          G TT          S        L+
Sbjct: 81  LEWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHVDVVAESADAAFEAALE 140

Query: 95  LKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLG-LKSFMCPSGINDFPMTNA 153
           + + A    +  DV F       +       E L  A  LG     + P           
Sbjct: 141 VGLRAVLGPVLQDVAFPDPGAETDEELEETEELLREAHGLGRDVVGLAPHFPYTVSPELL 200

Query: 154 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 213
             + E   +  +Y  P+ +H               +TLD               E    R
Sbjct: 201 ESLDE---LARKYGLPVHIHL-------------AETLDEVERVL---------EPYGAR 235

Query: 214 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCP---HYLAFS 270
            +  +               H VHLS+     +L + A++     +V  CP     L   
Sbjct: 236 PVERLDLLGLLGSHT--LLAHCVHLSEE----ELELLAESG---ASVVHCPRSNLKLG-- 284

Query: 271 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKA 330
                 G                      L  G    L +D + +   L +L E   ++ 
Sbjct: 285 -----SGIAPV---------------RRLLERGVNVALGTDGAASNNVLDMLRE---MRT 321

Query: 331 WGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVW 389
              +  L   L      G      TL           AK  G    G++ +G  ADLVV 
Sbjct: 322 ADLLQKLAGGLLAAQLPGEALDMATL---------GGAKALGLDDIGSLEVGKKADLVV- 371

Query: 390 EPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 439
                 +    H   ++  S   +        V   +  G LV ++G   
Sbjct: 372 -----LDASAPHLAPLRPVSRLVFAAGGK--DVDRVLVDGRLVMEDGRLL 414

Length = 421

>gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 13/107 (12%)

Query: 3   KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL--DDPGRTEWE- 59
             AV I++G I+++  EE         +V+D     + PGLID H HL        E+E 
Sbjct: 28  DGAVLIEDGKIVAVGPEE--IDIPAGAEVIDAKGKTVTPGLIDAHTHLGFGGSRGGEFEL 85

Query: 60  ---GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR 103
              G       AA GGI  L         +T     LK       KR
Sbjct: 86  REAGASYTEILAAGGGILPLD-----RGFTTARDGGLKATALPRLKR 127

Length = 406

>gnl|CDD|183965 PRK13308, ureC, urease subunit alpha; Reviewed

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 33/106 (31%), Positives = 42/106 (39%), Gaps = 16/106 (15%)

Query: 35  GEAVIM-PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST--E 91
            E +I  PG IDVH H D     +          A A GITT++   L       S    
Sbjct: 126 AEGLIATPGAIDVHVHFDSAQLVD---------HALASGITTMLGGGLGPTVGIDSGGPF 176

Query: 92  TLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 137
                + AAE    V+ GF G     N+   +AL   + AG  GLK
Sbjct: 177 NTGRMLQAAEA-WPVNFGFLG---RGNSSKPAALIEQVEAGACGLK 218

Length = 569

>gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated

 Score = 43.6 bits (104), Expect = 1e-04
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 5  AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
          A+ I++G I+ +  E D P  +   +V+D G  ++ PGLID H HL
Sbjct: 30 AIAIEDGKIVWVGPEADLPA-AYAAEVIDAGGKLVTPGLIDCHTHL 74

Length = 406

>gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 5  AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 49
          AV +++G I++I  E++     +  +++D     ++PG ID+H H
Sbjct: 18 AVLVEDGKIVAIGPEDE---LEEADEIIDLKGQYLVPGFIDIHIH 59

This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. Length = 374

>gnl|CDD|238621 cd01296, Imidazolone-5PH, Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 6  VEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDPG--RTEWE--- 59
          + I++G I ++      P       + +D G   + PGL+D H HL   G    E+    
Sbjct: 1  IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARL 60

Query: 60 -GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLK 94
           G       AA GGI + +     +    +    L+
Sbjct: 61 AGASYEEILAAGGGILSTVRATRAASEDELFASALR 96

In bacteria, the enzyme is part of histidine utilization (hut) operon. Length = 371

>gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5  AVEIKEGNIISIVSEEDW-PRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 63
          AV IK+G I+++ S+ +         +V+D     ++PG +D H HL   G +  E    
Sbjct: 26 AVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVDAHLHLISGGLSLLELNLD 85

Query: 64 GTKAAAA 70
          G ++   
Sbjct: 86 GVRSLDD 92

Length = 535

>gnl|CDD|236366 PRK09045, PRK09045, N-ethylammeline chlorohydrolase; Provisional

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 28/103 (27%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DD--- 52
           AV I++G I++I+   +        + V+  + V++PGLI+ H H          DD   
Sbjct: 30  AVAIRDGRIVAILPRAEARARYAAAETVELPDHVLIPGLINAHTHAAMSLLRGLADDLPL 89

Query: 53  ---------PGRTEW--EGF-PSGTKAAAA----GGITTLIDM 79
                    P    W  E F   GT  A A    GG T   DM
Sbjct: 90  MTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDM 132

Length = 443

>gnl|CDD|238631 cd01306, PhnM, PhnM is believed to be a subunit of the membrane associated C-P lyase complex

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 29/106 (27%)

Query: 298 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 357
           E    G +D+LSSD+ P                    +SL   L   +      G +L +
Sbjct: 241 ELAAHGLLDILSSDYVP--------------------ASL---LHAAFRLADLGGWSLPE 277

Query: 358 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPV 403
             +  S  PA+  G   +G+IA G  ADL++       +  +  PV
Sbjct: 278 AVALVSANPARAVGLTDRGSIAPGKRADLIL------VDDMDGVPV 317

C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria. Length = 325

>gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 11/61 (18%)

Query: 30 QVVDYGEAVIMPGLIDVHAHL--DDPGRTEWEGFPSGTKAAAAG---------GITTLID 78
          QV+D G   +MPGLID H HL  D          P   +   A          G TT+ D
Sbjct: 2  QVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRD 61

Query: 79 M 79
           
Sbjct: 62 A 62

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 342

>gnl|CDD|238632 cd01307, Met_dep_hydrolase_B, Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 36/182 (19%)

Query: 10  EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG----T 65
           E   I+ V            Q+VD G   + PG ID+H H+       ++G         
Sbjct: 5   ENGKIAAVGAALAA--PAATQIVDAGGCYVSPGWIDLHVHV-------YQGGTRYGDRPD 55

Query: 66  KAAAAGGITTLIDMPLNSDPSTISTETLKLKV-DAAEKRIY--VDVGFWGGLVPENAYN- 121
                 G+TT++D          + +  +  V + +  R+Y  +++   G +  +   + 
Sbjct: 56  MIGVKSGVTTVVDA---GSAGADNIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDP 112

Query: 122 ----ASALEALLNAG---VLGLKSFMCPSGINDF---PMTNASHIKEGLSVLARYKRPLL 171
                 A+ A        ++GLK+    S + ++   P+  A  I +   +      PL+
Sbjct: 113 DNIDEDAVVAAAREYPDVIVGLKARASKSVVGEWGIKPLELAKKIAKEADL------PLM 166

Query: 172 VH 173
           VH
Sbjct: 167 VH 168

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 338

>gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 23/94 (24%)

Query: 341 LPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK-GAIAIGNHADLVVWEPEAEFELDN 399
           L +  +   KYG++ E+     +  PAK+ G   + G++  G  ADLVVW         N
Sbjct: 288 LNLEAAKAVKYGLSYEEALKAITINPAKILGIEDRVGSLEPGKDADLVVW---------N 338

Query: 400 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 433
             P+                 K       G LVY
Sbjct: 339 GDPLEPT-------------SKPEQVYIDGRLVY 359

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 359

>gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 5  AVEIKEGNIISIVSEED-WPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE----WE 59
          AV +++G I+++ S+ +         +V+D     ++PG ID H+HL   G +       
Sbjct: 1  AVAVRDGRIVAVGSDAEAKALKGPATEVIDLKGKTVLPGFIDSHSHLLLGGLSLLWLDLS 60

Query: 60 GFPSGTKAAAA 70
          G  S  +A A 
Sbjct: 61 GVTSKEEALAR 71

YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. Length = 479

>gnl|CDD|238628 cd01303, GDEase, Guanine deaminase (GDEase)

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 8  IKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAH 49
          + +GNII+  + E   R +K G +V+D     I+PG ID H H
Sbjct: 31 VVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIH 73

Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool. Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	450
PLN02795	505	allantoinase	100.0
COG0044	430	PyrC Dihydroorotase and related cyclic amidohydrol	100.0
PRK06189	451	allantoinase; Provisional	100.0
PRK07627	425	dihydroorotase; Provisional	100.0
PRK13404	477	dihydropyrimidinase; Provisional	100.0
PRK08044	449	allantoinase; Provisional	100.0
TIGR03178	443	allantoinase allantoinase. This enzyme carries out	100.0
cd01315	447	L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinas	100.0
PLN02942	486	dihydropyrimidinase	100.0
PRK09059	429	dihydroorotase; Validated	100.0
PRK08417	386	dihydroorotase; Provisional	100.0
PRK07369	418	dihydroorotase; Provisional	100.0
cd01314	447	D-HYD D-hydantoinases (D-HYD) also called dihydrop	100.0
PRK08323	459	phenylhydantoinase; Validated	100.0
TIGR02033	454	D-hydantoinase D-hydantoinase. This model represen	100.0
TIGR00857	411	pyrC_multi dihydroorotase, multifunctional complex	100.0
PRK07575	438	dihydroorotase; Provisional	100.0
PRK09236	444	dihydroorotase; Reviewed	100.0
PRK01211	409	dihydroorotase; Provisional	100.0
PRK09060	444	dihydroorotase; Validated	100.0
PRK02382	443	dihydroorotase; Provisional	100.0
PRK09357	423	pyrC dihydroorotase; Validated	100.0
PRK04250	398	dihydroorotase; Provisional	100.0
KOG2584	522	consensus Dihydroorotase and related enzymes [Nucl	100.0
cd01318	361	DHOase_IIb Dihydroorotase (DHOase), subgroup IIb;	100.0
PRK00369	392	pyrC dihydroorotase; Provisional	100.0
cd01317	374	DHOase_IIa Dihydroorotase (DHOase), subgroup IIa;	100.0
cd01302	337	Cyclic_amidohydrolases Cyclic amidohydrolases, inc	100.0
cd01316	344	CAD_DHOase The eukaryotic CAD protein is a trifunc	100.0
PRK09061	509	D-glutamate deacylase; Validated	100.0
cd01297	415	D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci	100.0
PRK15446	383	phosphonate metabolism protein PhnM; Provisional	100.0
TIGR02318	376	phosphono_phnM phosphonate metabolism protein PhnM	100.0
PRK06687	419	chlorohydrolase; Validated	100.0
PRK15493	435	5-methylthioadenosine/S-adenosylhomocysteine deami	100.0
PRK08203	451	hydroxydechloroatrazine ethylaminohydrolase; Revie	100.0
cd01294	335	DHOase Dihydroorotase (DHOase) catalyzes the rever	100.0
cd01298	411	ATZ_TRZ_like TRZ/ATZ family contains enzymes from	100.0
PRK06380	418	metal-dependent hydrolase; Provisional	100.0
PRK09045	443	N-ethylammeline chlorohydrolase; Provisional	100.0
PRK07228	445	N-ethylammeline chlorohydrolase; Provisional	100.0
COG1228	406	HutI Imidazolonepropionase and related amidohydrol	100.0
PRK08204	449	hypothetical protein; Provisional	100.0
PRK13985	568	ureB urease subunit beta; Provisional	100.0
PRK12394	379	putative metallo-dependent hydrolase; Provisional	100.0
PRK07203	442	putative chlorohydrolase/aminohydrolase; Validated	100.0
PRK06151	488	N-ethylammeline chlorohydrolase; Provisional	100.0
PRK09228	433	guanine deaminase; Provisional	100.0
PRK13308	569	ureC urease subunit alpha; Reviewed	100.0
TIGR03314	441	Se_ssnA putative selenium metabolism protein SsnA.	100.0
TIGR01975	389	isoAsp_dipep isoaspartyl dipeptidase IadA. The L-i	100.0
cd00375	567	Urease_alpha Urease alpha-subunit; Urease is a nic	100.0
PRK12393	457	amidohydrolase; Provisional	100.0
PRK13309	572	ureC urease subunit alpha; Reviewed	100.0
PRK08393	424	N-ethylammeline chlorohydrolase; Provisional	100.0
TIGR00856	341	pyrC_dimer dihydroorotase, homodimeric type. This	100.0
TIGR02967	401	guan_deamin guanine deaminase. This model describe	100.0
PRK13206	573	ureC urease subunit alpha; Reviewed	100.0
COG1574	535	Predicted metal-dependent hydrolase with the TIM-b	99.98
cd01303	429	GDEase Guanine deaminase (GDEase). Guanine deamina	99.98
PRK10657	388	isoaspartyl dipeptidase; Provisional	99.98
cd01293	398	Bact_CD Bacterial cytosine deaminase and related m	99.97
PRK06038	430	N-ethylammeline chlorohydrolase; Provisional	99.97
PRK13207	568	ureC urease subunit alpha; Reviewed	99.97
cd01308	387	Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy	99.97
PRK07213	375	chlorohydrolase; Provisional	99.97
TIGR01178	552	ade adenine deaminase. The family described by thi	99.97
PRK09229	456	N-formimino-L-glutamate deiminase; Validated	99.97
TIGR02022	455	hutF formiminoglutamate deiminase. In some species	99.97
PRK09356	406	imidazolonepropionase; Validated	99.97
TIGR01224	377	hutI imidazolonepropionase. This enzyme catalyzes	99.97
PRK05451	345	dihydroorotase; Provisional	99.97
PRK09237	380	dihydroorotase; Provisional	99.97
cd01313	418	Met_dep_hydrolase_E Metallo-dependent hydrolases,	99.97
PRK07583	438	cytosine deaminase-like protein; Validated	99.97
PRK08418	408	chlorohydrolase; Provisional	99.97
cd01312	381	Met_dep_hydrolase_D Metallo-dependent hydrolases,	99.97
TIGR01792	567	urease_alph urease, alpha subunit. This model desc	99.97
PRK05985	391	cytosine deaminase; Provisional	99.97
PRK09230	426	cytosine deaminase; Provisional	99.97
COG0402	421	SsnA Cytosine deaminase and related metal-dependen	99.97
PLN02303	837	urease	99.96
cd01296	371	Imidazolone-5PH Imidazolonepropionase/imidazolone-	99.96
COG1001	584	AdeC Adenine deaminase [Nucleotide transport and m	99.96
PRK14085	382	imidazolonepropionase; Provisional	99.96
cd01299	342	Met_dep_hydrolase_A Metallo-dependent hydrolases,	99.96
PRK07572	426	cytosine deaminase; Validated	99.96
PLN02599	364	dihydroorotase	99.96
cd01307	338	Met_dep_hydrolase_B Metallo-dependent hydrolases,	99.96
PRK10027	588	cryptic adenine deaminase; Provisional	99.95
PRK06846	410	putative deaminase; Validated	99.95
KOG3968	439	consensus Atrazine chlorohydrolase/guanine deamina	99.95
cd01309	359	Met_dep_hydrolase_C Metallo-dependent hydrolases,	99.95
PRK11170	382	nagA N-acetylglucosamine-6-phosphate deacetylase;	99.95
TIGR00221	380	nagA N-acetylglucosamine-6-phosphate deacetylase.	99.94
cd01304	541	FMDH_A Formylmethanofuran dehydrogenase (FMDH) sub	99.94
COG1820	380	NagA N-acetylglucosamine-6-phosphate deacetylase [	99.94
cd01295	422	AdeC Adenine deaminase (AdeC) directly deaminates	99.94
TIGR03121	556	one_C_dehyd_A formylmethanofuran dehydrogenase sub	99.94
cd01300	479	YtcJ_like YtcJ_like metal dependent amidohydrolase	99.93
cd00854	374	NagA N-acetylglucosamine-6-phosphate deacetylase,	99.93
TIGR03583	365	EF_0837 probable amidohydrolase EF_0837/AHA_3915.	99.93
COG0804	568	UreC Urea amidohydrolase (urease) alpha subunit [A	99.93
COG3454	377	Metal-dependent hydrolase involved in phosphonate	99.93
COG3964	386	Predicted amidohydrolase [General function predict	99.92
COG3653	579	N-acyl-D-aspartate/D-glutamate deacylase [Secondar	99.92
cd01306	325	PhnM PhnM is believed to be a subunit of the membr	99.86
PF13147	304	Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2	99.85
PF01979	333	Amidohydro_1: Amidohydrolase family; InterPro: IPR	99.77
KOG3892	407	consensus N-acetyl-glucosamine-6-phosphate deacety	99.72
PF07969	404	Amidohydro_3: Amidohydrolase family; InterPro: IPR	99.7
COG1229	575	FwdA Formylmethanofuran dehydrogenase subunit A [E	99.65
PF13594	68	Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1	99.62
PRK06886	329	hypothetical protein; Validated	99.57
cd01292	275	metallo-dependent_hydrolases Superfamily of metall	99.55
cd01305	263	archeal_chlorohydrolases Predicted chlorohydrolase	99.54
COG0418	344	PyrC Dihydroorotase [Nucleotide transport and meta	99.53
KOG2902	344	consensus Dihydroorotase [Nucleotide transport and	99.28
PRK10812	265	putative DNAse; Provisional	99.06
cd01310	251	TatD_DNAse TatD like proteins; E.coli TatD is a cy	99.05
COG0084	256	TatD Mg-dependent DNase [DNA replication, recombin	99.02
TIGR00010	252	hydrolase, TatD family. Several genomes have multi	98.97
PRK11449	258	putative deoxyribonuclease YjjV; Provisional	98.91
PRK10425	258	DNase TatD; Provisional	98.88
PF01026	255	TatD_DNase: TatD related DNase The Pfam entry find	98.75
cd00530	293	PTE Phosphotriesterase (PTE) catalyzes the hydroly	98.69
PF12890	142	DHOase: Dihydro-orotase-like; InterPro: IPR024403	98.5
PRK09875	292	putative hydrolase; Provisional	98.38
TIGR01430	324	aden_deam adenosine deaminase. This family include	98.21
cd01320	325	ADA Adenosine deaminase (ADA) is a monomeric zinc	98.21
PRK09358	340	adenosine deaminase; Provisional	98.04
COG1099	254	Predicted metal-dependent hydrolases with the TIM-	97.97
PF07908	48	D-aminoacyl_C: D-aminoacylase, C-terminal region;	97.82
cd01311	263	PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC)	97.7
PF02126	308	PTE: Phosphotriesterase family; InterPro: IPR00155	97.66
PF04909	273	Amidohydro_2: Amidohydrolase; InterPro: IPR006992	97.51
COG1831	285	Predicted metal-dependent hydrolase (urease superf	97.11
COG1735	316	Php Predicted metal-dependent hydrolase with the T	97.04
cd00443	305	ADA_AMPD Adenosine/AMP deaminase. Adenosine deamin	96.69
PTZ00124	362	adenosine deaminase; Provisional	96.48
cd01321	345	ADGF Adenosine deaminase-related growth factors (A	96.42
PF00962	331	A_deaminase: Adenosine/AMP deaminase immunodeficie	95.76
COG2159	293	Predicted metal-dependent hydrolase of the TIM-bar	95.24
COG1816	345	Add Adenosine deaminase [Nucleotide transport and	94.54
TIGR01431	479	adm_rel adenosine deaminase-related growth factor.	92.7
KOG3020	296	consensus TatD-related DNase [Replication, recombi	92.44
PRK08392	215	hypothetical protein; Provisional	91.66
PRK08609	570	hypothetical protein; Provisional	91.54
COG3618	279	Predicted metal-dependent hydrolase of the TIM-bar	91.37
COG4464	254	CapC Capsular polysaccharide biosynthesis protein	88.01
KOG1097	399	consensus Adenine deaminase/adenosine deaminase [N	83.71
PF00449	121	Urease_alpha: Urease alpha-subunit, N-terminal dom	82.91
PRK06361	212	hypothetical protein; Provisional	82.64
PRK00912	237	ribonuclease P protein component 3; Provisional	81.19

>PLN02795 allantoinase

Probab=100.00  E-value=7.1e-58  Score=448.21  Aligned_cols=445  Identities=73%  Similarity=1.191  Sum_probs=370.1

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      ..++|+|+||+|++|++..+.+...++.+++|+.|++|+|||||+|+|+..++...++++....+.++.+|||++++++.
T Consensus        60 ~~~~v~i~dG~I~~I~~~~~~~~~~~~~~~ida~G~~v~PG~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTtv~dmp~  139 (505)
T PLN02795         60 IPGAVEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLIDVHVHLNEPGRTEWEGFPTGTKAAAAGGITTLVDMPL  139 (505)
T ss_pred             EEEEEEEECCEEEEecCccccccccCCCEEEECCCCEEecCEEecccCcCCCCccchhHHHHHHHHHHcCCcEEEECCCC
Confidence            35799999999999997543211113568999999999999999999998877777889999999999999999999984


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS  161 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (450)
                      ++.|.......+....+.......+++.++...........+.+.++.+.|+.+++.|+++.+....+..+.+.+.++++
T Consensus       140 ~~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~l~~~~~~G~~g~k~f~~~~~~~~~~~~~~~~l~~~~~  219 (505)
T PLN02795        140 NSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVPENAHNASVLEELLDAGALGLKSFMCPSGINDFPMTTATHIKAALP  219 (505)
T ss_pred             CCCCCCChHHHHHHHHHHhccCceeeeeceecccCcchhHHHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHH
Confidence            45666777777777766665666777777765443333456677777888999999987664433445678899999999


Q ss_pred             HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050          162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA  241 (450)
Q Consensus       162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~  241 (450)
                      .++++|+++.+|+++...+......   ..+......+....|..+|...+.+++.+++.....+..++.++|+.|+++.
T Consensus       220 ~a~~~g~~v~iH~E~~~l~~~~~~~---~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~lhi~HiSt~  296 (505)
T PLN02795        220 VLAKYGRPLLVHAEVVSPVESDSRL---DADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIVHLSDA  296 (505)
T ss_pred             HHHHhCCEEEEecCChhHhhhhhhh---hcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCEEEEECCCh
Confidence            9999999999999998764422110   1122222334677899999999999999999765555556899999999985


Q ss_pred             hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhc
Q 013050          242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL  321 (450)
Q Consensus       242 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~  321 (450)
                      .++++.++++++.|..+++++||||+.++.+.+..++..++++||+|...+++.+|+++.+|...+++|||.|++...+.
T Consensus       297 ~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~aL~~al~~G~Id~i~sDHap~~~~~K~  376 (505)
T PLN02795        297 ESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPPDLKL  376 (505)
T ss_pred             HHHHHHHHHHHHCCCcEEEEeChhhhcccHHHccCCCCceEEcCCCCChHHHHHHHHHHhCCCceEEecCCCCCChHHhc
Confidence            58999999999999999999999999999988877788999999999999999999999999999999999999988887


Q ss_pred             ccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCC
Q 013050          322 LDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH  401 (450)
Q Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~  401 (450)
                      ....+|+.++.|+.+++..++.++....+.++|++++++++|.|||+++|+++.|+|++|+.|||+|+|.+..+++....
T Consensus       377 ~~~~~~~~a~~G~~gle~~l~~~~~~~~~~~l~l~~~v~~~s~~pA~~~gl~~~G~l~~G~~ADlvi~d~~~~~~v~~~~  456 (505)
T PLN02795        377 LEEGNFLRAWGGISSLQFVLPATWTAGRAYGLTLEQLARWWSERPAKLAGLDSKGAIAPGKDADIVVWDPEAEFVLDESY  456 (505)
T ss_pred             cCcCCHhhCCCCceeHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCccCEEEEcCCcceEECcch
Confidence            66667999999999999999999988888899999999999999999999966899999999999999999888887652


Q ss_pred             CcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCccccc
Q 013050          402 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA  449 (450)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~~  449 (450)
                      .+.+...+++||.|..+.++|.+|+++|++||++|+++.+..|+++.+
T Consensus       457 ~~~s~~~~~sp~~G~~l~g~v~~tiv~G~~v~~~g~~~~~~~G~~~~~  504 (505)
T PLN02795        457 PIYHKHKSLSPYLGTKLSGKVIATFVRGNLVFLEGKHAKQACGSPILA  504 (505)
T ss_pred             hhhhcCCCcCCCCCeEEEeEEEEEEECCEEEEECCeEcCCCCCeEecC
Confidence            234444238999999999999999999999999999997788999875

>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]

Probab=100.00  E-value=7.8e-57  Score=425.90  Aligned_cols=412  Identities=36%  Similarity=0.538  Sum_probs=368.0

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      +.+||.|++|+|++|+......   .+.+++|+.|++|+||+||.|+|+..+++.+++++.++.+.+++.|+|++++|| 
T Consensus        17 ~~~di~i~~g~I~~Ig~~l~~~---~~~~iiD~~g~~v~PG~ID~HVH~repg~~~ke~~~tgs~AAa~GG~Ttv~dmP-   92 (430)
T COG0044          17 EVADILIKDGKIAAIGKNLEPT---SGAEIIDAKGLLVLPGLVDLHVHFREPGFEHKETFETGSRAAAAGGVTTVVDMP-   92 (430)
T ss_pred             eEecEEEECCEEEEeccCCCCC---CCCcEEECCCCEEccCeeEEEEecCCCCcchhhhHHHHHHHHHcCCceEEEECC-
Confidence            4689999999999999874432   478999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS  161 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (450)
                      ++.|.....+.+....+.+.....+++.+++++...+....+......   ..+++.|+..+.    +..+.+.+++.++
T Consensus        93 nt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~~~~~~~~~~~---~~g~~~F~~~~~----~~~~~~~~~~~~~  165 (430)
T COG0044          93 NTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNLGKLELTERGV---EAGFKGFMDDST----GALDDDVLEEALE  165 (430)
T ss_pred             CCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEeccccchhhhhhhhh---ccceEEEecCCc----CcCCHHHHHHHHH
Confidence            999998999999999999988999999999998887765332222222   456677765543    4688999999999


Q ss_pred             HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050          162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA  241 (450)
Q Consensus       162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~  241 (450)
                      .+...|..+.+|+++...+...+..    .+......++...|..+|...+.+.+++++.+       +.++|+.|+++.
T Consensus       166 ~~~~~~~~~~~H~Ed~~~~~~~~~~----~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~-------g~~vhi~HiSt~  234 (430)
T COG0044         166 YAAELGALILVHAEDDDLIAEGVMN----EGLRAPELGLAGRPPIAEASAIARDLELARAT-------GARVHICHISTK  234 (430)
T ss_pred             HHHhcCCeEEEecCChhHhhhHHHh----cCccchhhccCCCChHHHHHHHHHHHHHHHHh-------CCcEEEEEcCCH
Confidence            9999999999999999876655553    34555556778889999999999999999977       899999999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhc
Q 013050          242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL  321 (450)
Q Consensus       242 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~  321 (450)
                       ++++.++.++..|++++++++|||++++.+++..++..++++||+|...++..+|+++..|...+++|||.|+....+.
T Consensus       235 -~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~~~~~~k~nPPLR~~~dr~aL~~~l~~G~ID~iasDHaPht~eeK~  313 (430)
T COG0044         235 -ESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGTLAKVNPPLRDEEDREALWEALKDGVIDVIASDHAPHTLEEKR  313 (430)
T ss_pred             -HHHHHHHHHhhcCCceEEeecchheEccHhHhhccCcceEECCCCCCHHHHHHHHHHHhCCCCcEEEcCCCCCCHHHhc
Confidence             9999999999999999999999999999999988999999999999999999999999999999999999999999885


Q ss_pred             ccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCC
Q 013050          322 LDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH  401 (450)
Q Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~  401 (450)
                      .   .|..++.|+.+++..++.++.++.+..+|+++++++.|.|||++||++..|.|++|+.|||+|+|.+.++++..+ 
T Consensus       314 ~---~f~~ap~G~~glE~~lpl~l~lv~~g~lsl~~~v~~~S~nPA~ifgl~~~g~i~~G~~ADl~lvD~~~~~~i~~~-  389 (430)
T COG0044         314 L---PFEEAPSGIPGLETALPLLLTLVKKGRLSLERLVELLSTNPARIFGLPPKGAIEEGADADLVLVDPDEEWTIRAE-  389 (430)
T ss_pred             c---chhhCCCCCccHHHHHHHHHHHHHcCCcCHHHHHHHHhhCHHHHhCCCCCCcccCCCccCEEEEcCCCCeEEchh-
Confidence            2   399999999999999999999777888999999999999999999995578899999999999999999999988 


Q ss_pred             CcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC
Q 013050          402 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA  441 (450)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~  441 (450)
                      .+.++.. ++||+|..+.+.|.+|+++|+++|++++....
T Consensus       390 ~~~sk~~-~sPf~G~~~~g~v~~Ti~rG~~v~~~~~~~~~  428 (430)
T COG0044         390 ELYSKAK-NSPFEGFELKGRVVATILRGKVVYEDGEVIAK  428 (430)
T ss_pred             hhccccC-CCCcCCCEEeeeEEEEEECCEEEEECCcEecC
Confidence            8999999 99999999999999999999999999986643

>PRK06189 allantoinase; Provisional

Probab=100.00  E-value=1.6e-55  Score=429.67  Aligned_cols=427  Identities=39%  Similarity=0.680  Sum_probs=361.4

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN   82 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~   82 (450)
                      .++|.|+||+|++|++....    +..++||++|++|+|||||+|+|+..++...++++.+..+.++++|+|++++++.+
T Consensus        20 ~~~v~i~~G~I~~i~~~~~~----~~~~~iD~~g~~vlPG~ID~H~H~~~~~~~~~~~~~~~~~aa~~gGvTt~~~~p~~   95 (451)
T PRK06189         20 RADIGIKNGKIAEIAPEISS----PAREIIDADGLYVFPGMIDVHVHFNEPGRTHWEGFATGSAALAAGGCTTYFDMPLN   95 (451)
T ss_pred             EEEEEEECCEEEEecCCCCC----CCCeEEECCCCEEecCEEEeeeccCCCCCCCcccHHHHHHHHHhCCEEEEEECCCC
Confidence            57999999999999875331    34678999999999999999999988776678889999999999999999999855


Q ss_pred             CCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHH
Q 013050           83 SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSV  162 (450)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (450)
                      +.|.....+.+....+.+.....+++.++......   ..+.+.++.+.|+.+++.|+.+.+..+.+..+...+.+.++.
T Consensus        96 t~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~l~~l~~~Gv~~~k~f~~~~~~~~~~~~~~~~l~~~~~~  172 (451)
T PRK06189         96 SIPPTVTREALDAKAELARQKSAVDFALWGGLVPG---NLEHLRELAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMKE  172 (451)
T ss_pred             CCCCCCcHHHHHHHHHHhCcCceEeEEEEeccccc---CHHHHHHHHHcCCcEEEEEccccCCCCcCcCCHHHHHHHHHH
Confidence            55667777778777777777778888887544322   356788888899999999876543333445677889999999


Q ss_pred             HHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChh
Q 013050          163 LARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS  242 (450)
Q Consensus       163 a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~  242 (450)
                      +++.+..+.+|+++...+..... .....+......++...|..+|...+.+++.++++.       +.++|+.|+++. 
T Consensus       173 ~~~~~~~~~~H~e~~~~~~~~~~-~~~~~g~~~~~~~~~~~P~~~E~~~v~~~l~la~~~-------g~~~hi~HiSt~-  243 (451)
T PRK06189        173 IAALGKILALHAESDALTRHLTT-QARQQGKTDVRDYLESRPVVAELEAVQRALLYAQET-------GCPLHFVHISSG-  243 (451)
T ss_pred             HHhcCCeEEEECCChHHHHHHHH-HHHhcCCCChhHccccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEECCCH-
Confidence            99999999999988776442211 111222223334667789999999999999999977       999999999998 


Q ss_pred             HHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcc
Q 013050          243 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLL  322 (450)
Q Consensus       243 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~  322 (450)
                      ++++.+++++..|..+++++|||++.++.+.+...+..++++||++...+++.+|+++++|..++++||+.|+....+. 
T Consensus       244 ~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~~~K~-  322 (451)
T PRK06189        244 KAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLLAGEIDMISSDHSPCPPELKE-  322 (451)
T ss_pred             HHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhCcCCceEEeCCCCChhhHHHHHHHHhCCCceEEECCCCCCCHHHcC-
Confidence            9999999999999999999999999999988777788899999999999999999999999999999999999877653 


Q ss_pred             cCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCC
Q 013050          323 DEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH  401 (450)
Q Consensus       323 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~  401 (450)
                       ..+|+..+.|+.+++..++.+++.. .+.++|++++++++|.|||++||+++.|+|++|++|||+|+|.+.++++..+ 
T Consensus       323 -~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~npA~~lgl~~~G~l~~G~~ADlvi~d~~~~~~~~~~-  400 (451)
T PRK06189        323 -GDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLETIARLLATNPAKRFGLPQKGRLEVGADADFVLVDLDETYTLTKE-  400 (451)
T ss_pred             -cCCcccCCCCceeHHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHhCCCCCCcccCCCcCCEEEEcCCCCEEECHH-
Confidence             2468899999999999999988775 5667999999999999999999996589999999999999999888888766 


Q ss_pred             CcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCccccc
Q 013050          402 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA  449 (450)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~~  449 (450)
                      ++.+... ++||.|..+.++|..|+++|++||++|++++...|+++++
T Consensus       401 ~~~~~~~-~~p~~g~~~~g~v~~tiv~G~~v~~~g~~~~~~~G~~~~~  447 (451)
T PRK06189        401 DLFYRHK-QSPYEGRTFPGRVVATYLRGQCVYQDGEVFPPPRGQLLRP  447 (451)
T ss_pred             HhhhcCC-CCCcCCcEEEeEEEEEEECCEEEEECCEEccCCCCcEecC
Confidence            6666777 9999999999999999999999999999998889999986

>PRK07627 dihydroorotase; Provisional

Probab=100.00  E-value=1.8e-55  Score=423.19  Aligned_cols=406  Identities=24%  Similarity=0.373  Sum_probs=346.2

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      ..++|+|+||||++|++....   ..+.++||++|++|+|||||+|+|+..++...++++.+..+.++.+||||+++++ 
T Consensus        19 ~~~~I~I~~g~I~~i~~~~~~---~~~~~~iDa~g~~vlPG~iD~H~H~~~~g~~~~e~~~t~s~aa~~gGvTtv~~~p-   94 (425)
T PRK07627         19 RQADLYVAAGKIAAIGQAPAG---FNADKTIDASGLIVCPGLVDLSARLREPGYEYKATLESEMAAAVAGGVTSLVCPP-   94 (425)
T ss_pred             ceeEEEEECCEEEEecCCCcC---CCCCeEEECCCCEEeccEEeccccccCCCccccCcHHHHHHHHHhCCeeEEEeCC-
Confidence            357999999999999875321   1357899999999999999999999888777788999999999999999999998 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC-CccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL  160 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (450)
                      ++.+.......+............+++..++.+... ....+.++.++.+.|+.+++.+       ..+..+...+.+.+
T Consensus        95 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~l~~~G~~~fk~~-------~~~~~~~~~l~~~~  167 (425)
T PRK07627         95 DTDPVLDEPGLVEMLKFRARNLNQAHVYPLGALTVGLKGEVLTEMVELTEAGCVGFSQA-------NVPVVDTQVLLRAL  167 (425)
T ss_pred             CCCCCCCCHHHHHHHHHHhhccCceeEEEeCeEEcCCCccCHHHHHHHHhCCEEEEEcC-------CcccCCHHHHHHHH
Confidence            777777766666555555554445665556554433 4456778888888999999963       22346778899999


Q ss_pred             HHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050          161 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD  240 (450)
Q Consensus       161 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~  240 (450)
                      +.+++.|.++.+|+++.......+.    +.+......+....|..+|...+.+++.+++.+       +.++|+.|+++
T Consensus       168 ~~~~~~~~~v~~H~E~~~~~~~~~~----~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~-------~~~~hi~HvSs  236 (425)
T PRK07627        168 QYASTFGFTVWLRPLDAFLGRGGVA----ASGAVASRLGLSGVPVAAETIALHTIFELMRVT-------GARVHLARLSS  236 (425)
T ss_pred             HHHHhcCCEEEEecCChhhhhCCCc----CCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHH-------CCcEEEEeCCC
Confidence            9999999999999998765433222    333334445567889999999999999999987       99999999999


Q ss_pred             hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050          241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK  320 (450)
Q Consensus       241 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~  320 (450)
                      . ++++.++++++.|..+++++||||++++.+.+..++..++++||+|...+++.+|+++.+|..++++|||+|.....+
T Consensus       237 ~-~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~SDHaP~~~~~k  315 (425)
T PRK07627        237 A-AGVALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPPLRSQRDREAIRAALADGTIDAICSDHTPVDDDEK  315 (425)
T ss_pred             H-HHHHHHHHHHHCCCCeEEEeccchheEeHhHHhccCCceEEeCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHc
Confidence            9 999999999999999999999999999998887778899999999999999999999999999999999999976665


Q ss_pred             cccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCC
Q 013050          321 LLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND  400 (450)
Q Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~  400 (450)
                      .   .+|+..+.|+.+.+..++.++....+.++|++++++++|.|||+++|+ +.|+|++|+.|||+++|.+.++++..+
T Consensus       316 ~---~~~~~~~~G~~g~e~~~pl~~~~~~~~~i~~~~~l~~~t~~pA~~lg~-~~G~l~~G~~ADlvv~d~~~~~~v~~~  391 (425)
T PRK07627        316 L---LPFAEATPGATGLELLLPLTLKWADEAKVPLARALARITSAPARVLGL-PAGRLAEGAPADLCVFDPDAHWRVEPR  391 (425)
T ss_pred             c---CCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCC-CCCcccCCCcCCEEEECCCCcEEEChh
Confidence            3   469999999999999999888877788999999999999999999999 579999999999999999988999887


Q ss_pred             CCcccCCCCccccCCceEeeEEEEEEECCeEEEecC
Q 013050          401 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG  436 (450)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g  436 (450)
                       ++.++.. ++||.+..+.++|.+||++|++||++.
T Consensus       392 -~~~s~~~-~sp~~g~~~~g~v~~t~v~G~~v~~~~  425 (425)
T PRK07627        392 -ALKSQGK-NTPFLGYELPGRVRATLVAGQVAFERR  425 (425)
T ss_pred             -hccccCC-CCCCcCCEeeeEEEEEEECCEEEeecC
Confidence             7888888 999999999999999999999999863

>PRK13404 dihydropyrimidinase; Provisional

Probab=100.00  E-value=2e-55  Score=429.50  Aligned_cols=426  Identities=28%  Similarity=0.420  Sum_probs=354.9

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC---CCCcccchHHHHHHHHhCCceEEEeC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDM   79 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~---~~~~~~~~~~~~~~~~~~GvT~~~~~   79 (450)
                      .++|+|+||+|++|++..  +   .+.++||++|++|+|||||+|+|+..+   +....+++.+..+.++.+|||+++++
T Consensus        21 ~~~i~I~dg~I~~i~~~~--~---~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~e~~~~~s~aa~~gGvTtv~~~   95 (477)
T PRK13404         21 QADIGIRGGRIAALGEGL--G---PGAREIDATGRLVLPGGVDSHCHIDQPSGDGIMMADDFYTGTVSAAFGGTTTVIPF   95 (477)
T ss_pred             EEEEEEECCEEEEecCCC--C---CCCeEEECCCCEEecCEEEeEEcCCccccCCccccchHHHHHHHHHcCCccEEEEc
Confidence            479999999999998642  1   356899999999999999999999764   34456789999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccch-HHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHH
Q 013050           80 PLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA-SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE  158 (450)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~  158 (450)
                      + .+.+.....+.+............++++++........+.. +++.++.+.|+.++|.|+.+.+    +..+.+++.+
T Consensus        96 ~-~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~v~~l~~~G~~~iKi~~~~~~----~~~~~~~l~~  170 (477)
T PRK13404         96 A-AQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIVADPTEEVLTEELPALIAQGYTSFKVFMTYDD----LKLDDRQILD  170 (477)
T ss_pred             c-CCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEecCCChhhHHHHHHHHHHcCCCEEEEEecCCC----CCCCHHHHHH
Confidence            7 55555566666666666666666778877765554444433 6788889999999999875422    3567899999


Q ss_pred             HHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEec
Q 013050          159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL  238 (450)
Q Consensus       159 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~  238 (450)
                      +++.|+++|.+|.+|+++...+...... ....+......++...|..+|...+.+++.+++++       +.++|+.|+
T Consensus       171 ~~~~a~~~g~~V~~Hae~~~~i~~~~~~-~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~-------g~~~hi~Hv  242 (477)
T PRK13404        171 VLAVARRHGAMVMVHAENHDMIAWLTKR-LLAAGLTAPKYHAISRPMLAEREATHRAIALAELV-------DVPILIVHV  242 (477)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHHHHH-HHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEEC
Confidence            9999999999999999988775421111 01222333344567789999999999999999987       999999999


Q ss_pred             CChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC---CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC
Q 013050          239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD---GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT  315 (450)
Q Consensus       239 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~  315 (450)
                      ++. .+++.++++++.|..+++++|||++.++.+.+..   ++..++++||++...+++.+|+++..|..++++|||.|.
T Consensus       243 s~~-~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~Pplr~~~d~~aL~~~l~~G~id~i~sDHap~  321 (477)
T PRK13404        243 SGR-EAAEQIRRARGRGLKIFAETCPQYLFLTAEDLDRPGMEGAKYICSPPPRDKANQEAIWNGLADGTFEVFSSDHAPF  321 (477)
T ss_pred             CCH-HHHHHHHHHHHCCCeEEEEEChhhhccCHHHhcCccccCCceEECCCCCChHHHHHHHHHHhCCCceEEecCCCCC
Confidence            998 9999999999999999999999999999988765   678899999999999999999999999999999999999


Q ss_pred             Chhhh---ccc--CCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEE
Q 013050          316 VPELK---LLD--EGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVV  388 (450)
Q Consensus       316 ~~~~~---~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv  388 (450)
                      ....+   +..  ..+|+.++.|+.+++..++.+++... ..++|++++++++|.|||++||+ ++.|+|++|+.|||++
T Consensus       322 ~~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~ll~~~v~~~~ls~~~~~~~~t~~pA~~lgl~~~~G~i~~G~~ADlvi  401 (477)
T PRK13404        322 RFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAKLYGLYPRKGAIAIGADADIAI  401 (477)
T ss_pred             CcccchhhhhccCCCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCceecCCCcCCEEE
Confidence            75433   111  23688899999999999999998754 55799999999999999999999 7789999999999999


Q ss_pred             EeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050          389 WEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA  449 (450)
Q Consensus       389 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~  449 (450)
                      +|.+.++++... .+.+... ++||.+..+.++|.+|||+|++||+||+++.. ..|+++++
T Consensus       402 vd~~~~~~v~~~-~~~~~~~-~sp~~g~~~~g~v~~tiv~G~vv~~~g~~~~~~~~G~~~~~  461 (477)
T PRK13404        402 WDPDREVTITNA-DLHHAAD-YTPYEGMRVTGWPVTVLSRGRVVVEDGELVAERGSGQFLAR  461 (477)
T ss_pred             EcCCccEEEchH-HhcccCC-CCcccceEEeeeEEEEEECCEEEEECCEEecCCCceeEecC
Confidence            999999999876 6777777 99999999999999999999999999999954 57999875

>PRK08044 allantoinase; Provisional

Probab=100.00  E-value=9.6e-55  Score=422.09  Aligned_cols=424  Identities=36%  Similarity=0.643  Sum_probs=362.4

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN   82 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~   82 (450)
                      .++|+|+||+|++|++...     .+.++||+.|++++|||||+|+|+..++....+++.+..+.+++.|||++.+++.+
T Consensus        20 ~~~i~I~dg~I~~i~~~~~-----~~~~~iD~~G~~v~Pg~iD~h~h~~~~~~~~~e~~~~~~~aa~~gGvTtv~d~~~~   94 (449)
T PRK08044         20 VVDIAVKGGKIAAIGQDLG-----DAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLN   94 (449)
T ss_pred             EEEEEEECCEEEEecCCCC-----CCCeEEECCCCEEcCCeeccccccCCCCccccccHHHHHHHHHhCCceEEECCccC
Confidence            4799999999999986432     25689999999999999999999988877667889999999999999999999856


Q ss_pred             CCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCC----CCCCCCCHHHHHH
Q 013050           83 SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI----NDFPMTNASHIKE  158 (450)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~l~~  158 (450)
                      +.|.....+.+....+.....+.+++.+++++...   ...++.++.+.|+.++|.|+.+.+.    .+.+..+...+.+
T Consensus        95 ~~p~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~~---~~~ei~~l~~~gv~~fk~~~~~~~~~~~~~~~~~~~~~~l~~  171 (449)
T PRK08044         95 QLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY---NLDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFYK  171 (449)
T ss_pred             CCCCCCcHHHHHHHHHHhccCCeeeEEEEeeeCCC---CHHHHHHHHHcCceEEEEEecccCcccccCCccCcCHHHHHH
Confidence            66778888888888888877888888888766533   4667788888999999999765321    1123346678889


Q ss_pred             HHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEec
Q 013050          159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL  238 (450)
Q Consensus       159 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~  238 (450)
                      .++.+++.|.++.+|+++...+.... ......+......++...|..+|.+.+.+++.++++.       +.++|+.|+
T Consensus       172 ~~~~~~~~~~~v~~H~E~~~l~~~~~-~~~~~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~~~-------g~~vhi~Hi  243 (449)
T PRK08044        172 GAQKLGELGQPVLVHCENALICDELG-EEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVA-------GCRLHVCHI  243 (449)
T ss_pred             HHHHHHhcCCEEEEecCCHHHHHHHH-HHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeC
Confidence            99999999999999999988755321 1111222333444567789999999999999999987       999999999


Q ss_pred             CChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChh
Q 013050          239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPE  318 (450)
Q Consensus       239 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~  318 (450)
                      ++. ++++.++++++.|..+++++|+|++.++.+.+...+..++++||+|...+++.+|+++..|..++++|||.|....
T Consensus       244 St~-~~~~~i~~ak~~G~~it~e~~~h~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~sDH~P~~~~  322 (449)
T PRK08044        244 SSP-EGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPE  322 (449)
T ss_pred             CCH-HHHHHHHHHHHCCCCEEEEcChhhhcccHHHhhCCCCcEEEcCCCCChHHHHHHHHHHhCCCceEEEcCCCCCChH
Confidence            998 8999999999999999999999999999998877788999999999999999999999999999999999998766


Q ss_pred             hhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceee
Q 013050          319 LKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFEL  397 (450)
Q Consensus       319 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~  397 (450)
                      .+.   .+|+.++.|+.+.+..++.++..+. ..+++++++++++|.|||++||+++.|+|++|++|||+++|.+..|++
T Consensus       323 ~K~---~~~~~~~~g~~g~e~~l~~~~~~~v~~~~l~~~~~v~~~s~npA~~lgl~~~G~i~~G~~ADlvi~d~~~~~~v  399 (449)
T PRK08044        323 MKA---GNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVL  399 (449)
T ss_pred             Hcc---CChhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCCCCCcCCCCCccCEEEECCCCcEEE
Confidence            653   4799999999999999999887654 668999999999999999999995479999999999999999999999


Q ss_pred             CCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc-CCCCCcccc
Q 013050          398 DNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA-PAACGSPIL  448 (450)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~-~~~~g~~~~  448 (450)
                      ..+ .+.++.. ++||+|..+.++|.+||++|++||++|+.+ .+..|+|++
T Consensus       400 ~~~-~~~s~~~-~sp~~G~~l~G~v~~t~~~G~~v~~~~~~~~~~~~G~~~~  449 (449)
T PRK08044        400 KNE-DLEYRHK-VSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFIL  449 (449)
T ss_pred             CHH-HccccCC-CCCCCCCEEeeeEEEEEECCEEEEECCccccCCCCcccCC
Confidence            888 8888888 999999999999999999999999999854 667899985

>TIGR03178 allantoinase allantoinase

Probab=100.00  E-value=1e-54  Score=423.88  Aligned_cols=427  Identities=46%  Similarity=0.767  Sum_probs=359.8

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      ..++|+|+||+|++|++....    .+.++||++|++|+|||||+|+|+..++...++++.+..+.++++|||++++++.
T Consensus        16 ~~~~v~i~dg~I~~i~~~~~~----~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~gGvTtv~dmp~   91 (443)
T TIGR03178        16 READVGVKGGKIAAIGPDILG----PAAKIIDAGGLVVFPGVVDTHVHINEPGRTEWEGFETGTRAAAAGGITTYIDMPL   91 (443)
T ss_pred             eEEEEEEECCEEEEeeCCCCC----CCCeEEECCCCEEeccEeccccccCCCCccccchHHHHHHHHHcCCeEEEEECCC
Confidence            357999999999999875321    3568999999999999999999998877667888999999999999999999974


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS  161 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (450)
                      ++.|.....+.+....+.......+++..+++..   ....+++..+.+.|+.+++.|+.+.+....+..+.+.+.++++
T Consensus        92 ~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~i~~~~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~  168 (443)
T TIGR03178        92 NSIPATTTRASLEAKFEAAKGKLAVDVGFWGGLV---PYNLDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMR  168 (443)
T ss_pred             CCCCCCCcHHHHHHHHHHhccCCceeEEEEeccC---CCCHHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHH
Confidence            4556666777777777776666677887765443   2446678888889999999997664433345678899999999


Q ss_pred             HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050          162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA  241 (450)
Q Consensus       162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~  241 (450)
                      .++++|+++.+|+++...+..... .....+......++...|..++.+.+.++++++++.       +.++|+.|+++.
T Consensus       169 ~a~~~g~~v~~H~E~~~~~~~~~~-~~~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~-------g~~vhi~Hiss~  240 (443)
T TIGR03178       169 ELARLGQLLLVHAENPAITSALGE-EAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVT-------GCRVHVVHLSSA  240 (443)
T ss_pred             HHHhcCCeEEEeccChHHHHHHHH-HHHhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH
Confidence            999999999999988766443211 111233334445567789999999999999999987       899999999998


Q ss_pred             hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhc
Q 013050          242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL  321 (450)
Q Consensus       242 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~  321 (450)
                       ++++.++++++.|+.++++++||++.++.+.+...+..++++||++...++..+|++++.|..++++||+.|.....+.
T Consensus       241 -~~~~~i~~~~~~g~~it~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~SDh~p~~~~~K~  319 (443)
T TIGR03178       241 -EAVELITEAKQEGLDVTVETCPHYLTLTAEEVPDGGTLAKCAPPIRDLANQEGLWEALLNGLIDCVVSDHSPCTPDLKR  319 (443)
T ss_pred             -HHHHHHHHHHHCCCcEEEEECccceEecHHHhhCcCcceEEcCCCCChHHHHHHHHHHHcCCccEEeCCCCCCChHHcC
Confidence             8999999999999999999999999999888777788899999999999999999999999999999999999876653


Q ss_pred             ccCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCC
Q 013050          322 LDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND  400 (450)
Q Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~  400 (450)
                        .++|+.++.|+.+++..++.++... .+.++|++++++++|.|||+++|+++.|+|++|+.|||+|+|.+.++++...
T Consensus       320 --~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~pA~~~g~~~~G~l~~G~~Ad~vi~d~~~~~~~~~~  397 (443)
T TIGR03178       320 --AGDFFKAWGGIAGLQSTLDVMFDEAVQKRGLPLEDIARLMATNPAKRFGLAQKGRIAPGKDADFVFVDPDESYTLTPD  397 (443)
T ss_pred             --cCChhhCCCCeeEHHHhHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCCCCCCccCCCCcCCEEEEcCCCcEEEcHH
Confidence              3578899999999999999888766 4678999999999999999999995579999999999999999887888766


Q ss_pred             CCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCcccc
Q 013050          401 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL  448 (450)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~  448 (450)
                       .+.+... ++||.+..+.++|.+||++|++||++|++++...|++|.
T Consensus       398 -~~~~~~~-~~p~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~g~~~~  443 (443)
T TIGR03178       398 -DLYYRHK-VSPYVGRTIGGRVRATYLRGQCIYDDEQFIGAPKGQLLL  443 (443)
T ss_pred             -HhhhcCC-CCCcCCcEEeeEEEEEEECCEEEEECCeeccCCCCcccC
Confidence             5666777 999999999999999999999999999999777999873

This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.

>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology)

Probab=100.00  E-value=3.2e-54  Score=422.53  Aligned_cols=430  Identities=51%  Similarity=0.872  Sum_probs=360.7

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      .+++|+|+||||++|++....+   .+.++||++|++|+|||||+|+|+..++...++++.+..+.++.+||||+++++.
T Consensus        16 ~~~~v~I~~g~I~~i~~~~~~~---~~~~~iDa~G~~v~PG~ID~H~H~~~~~~~~~e~~~~~s~aal~gGvTtv~d~p~   92 (447)
T cd01315          16 READIAVKGGKIAAIGPDIANT---EAEEVIDAGGLVVMPGLIDTHVHINEPGRTEWEGFETGTKAAAAGGITTIIDMPL   92 (447)
T ss_pred             eEeEEEEECCEEEEEeCCCCCC---CCCeEEECCCCEEeccEeeceeccCCCCccccccHHHHHHHHHhCCceEEEeCCC
Confidence            4579999999999998764311   3678999999999999999999998777777888999999999999999999984


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS  161 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (450)
                      +..|.......+....+.......+++..++....   ...+++.++.+.|+.+++.++.+......+..+.+.+.++++
T Consensus        93 ~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~ei~~l~~~G~~giKv~~~~~~~~~~~~~~~~~l~~~~~  169 (447)
T cd01315          93 NSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVP---GNLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVDDEQLEEAMK  169 (447)
T ss_pred             CCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecC---CCHHHHHHHHHcCCcEEEEEecccCCCCcccCCHHHHHHHHH
Confidence            55566677777777777666556777777654332   246677888889999999987654433344578899999999


Q ss_pred             HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050          162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA  241 (450)
Q Consensus       162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~  241 (450)
                      .++++|+++.+|+++...+........ ..+......+....|...+...+.+++.++++.       +.++|+.|+++.
T Consensus       170 ~a~~~g~~v~vH~e~~~~~~~~~~~~~-~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~-------g~~ihi~h~s~~  241 (447)
T cd01315         170 ELAKTGSVLAVHAENPEITEALQEQAK-AKGKRDYRDYLASRPVFTEVEAIQRILLLAKET-------GCRLHIVHLSSA  241 (447)
T ss_pred             HHHhcCCeEEEEcCCHHHHHHHHHhHh-hcCCCChHHhhccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH
Confidence            999999999999998877554443222 222223344567789999999999999999977       899999999998


Q ss_pred             hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhc
Q 013050          242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL  321 (450)
Q Consensus       242 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~  321 (450)
                       .+++.+++++..|..+++++++|++.++.+.+...+..++++||++...++..+|++++.|..++++||+.|.....+.
T Consensus       242 -~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~g~i~~i~SDh~p~~~~~k~  320 (447)
T cd01315         242 -EAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAANQEQLWEALENGDIDMVVSDHSPCTPELKL  320 (447)
T ss_pred             -HHHHHHHHHHHCCCceEEEeccccEEEcHHHccCCCCceEECCCCCChHHHHHHHHHHhCCceeEEeCCCCCCCHHHhc
Confidence             9999999999999999999999999999888877788899999999999999999999999999999999999877665


Q ss_pred             ccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCC
Q 013050          322 LDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDN  399 (450)
Q Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~  399 (450)
                      ....+|+.++.|+.+.+..++.++..+. ..++|++++++++|.|||+++|+ ++.|+|++|++|||+|+|.+..+.+..
T Consensus       321 ~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~~~G~l~~g~~Ad~~v~d~~~~~~~~~  400 (447)
T cd01315         321 LGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDA  400 (447)
T ss_pred             cCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCccccCCCCCCEEEEcCCCCEEEcH
Confidence            3345788889999999999988876654 56899999999999999999999 578999999999999999988787766


Q ss_pred             CCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCcccc
Q 013050          400 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL  448 (450)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~  448 (450)
                      + .+.+... ++||.+..+.++|.+||++|++||++|+++....||+|+
T Consensus       401 ~-~~~~~~~-~~~~~g~~~~g~v~~ti~~G~~v~~~~~~~~~~~G~~~~  447 (447)
T cd01315         401 E-DLYYKNK-ISPYVGRTLKGRVHATILRGTVVYQDGEVVGEPLGQLLL  447 (447)
T ss_pred             H-HccccCC-CCCccCeEEeeeEEEEEECCEEEEECCeEccCCCceEeC
Confidence            5 5566677 999999999999999999999999999999766899985

But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.

>PLN02942 dihydropyrimidinase

Probab=100.00  E-value=2.2e-54  Score=424.21  Aligned_cols=427  Identities=25%  Similarity=0.339  Sum_probs=347.1

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC--CCcccchHHHHHHHHhCCceEEEeCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG--RTEWEGFPSGTKAAAAGGITTLIDMP   80 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~--~~~~~~~~~~~~~~~~~GvT~~~~~~   80 (450)
                      .++|+|+||+|++|++....+   ...++||++|++|+|||||+|+|+..+.  ....+++.++++.++.+||||+.|+.
T Consensus        22 ~~~i~I~~g~I~~i~~~~~~~---~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~~~~~ed~~s~s~aAl~gGvTTv~D~~   98 (486)
T PLN02942         22 LADVYVEDGIIVAVAPNLKVP---DDVRVIDATGKFVMPGGIDPHTHLAMPFMGTETIDDFFSGQAAALAGGTTMHIDFV   98 (486)
T ss_pred             EeEEEEECCEEEEEcCCCCCC---CCCeEEECCCCEEecCEeeeeeccCcccCCCcccchHHHHHHHHHcCCCeEEEeCC
Confidence            478999999999998754321   2568999999999999999999998763  44678899999999999999999985


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHH
Q 013050           81 LNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEG  159 (450)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~  159 (450)
                       ... .......+......+. +..++++.+...........+++.++.+ .|+.+++.++.+.+   ....+.+.+.+.
T Consensus        99 -~~~-~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~e~~~l~~~~gv~~~k~~~~~~~---~~~~~~~~l~~~  172 (486)
T PLN02942         99 -IPV-NGNLLAGYEAYEKKAE-KSCMDYGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMAYKG---SLMVTDELLLEG  172 (486)
T ss_pred             -CCC-CCCHHHHHHHHHHHHh-hcCCCEEEEEEecCCcHhHHHHHHHHHHhCCCceEEEEEecCC---CCCCCHHHHHHH
Confidence             222 1222455555444444 4457777765544333333456666644 68888998876532   234578999999


Q ss_pred             HHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecC
Q 013050          160 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS  239 (450)
Q Consensus       160 ~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~  239 (450)
                      ++.++++|.++.+|+++........+... ..+......+....|..+|...+.+++.++...       +.++|+.|++
T Consensus       173 ~~~a~~~~~~v~~HaE~~~~~~~~~~~~~-~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~-------g~~~~i~H~s  244 (486)
T PLN02942        173 FKRCKSLGALAMVHAENGDAVFEGQKRMI-ELGITGPEGHALSRPPLLEGEATARAIRLAKFV-------NTPLYVVHVM  244 (486)
T ss_pred             HHHHHhcCCeEEEEcCCHHHHHHHHHHHH-HcCCCChhhhhccCCchHHHHHHHHHHHHHHHh-------CCCEEEEECC
Confidence            99999999999999988776554443221 112222233456688899999999999999977       9999999999


Q ss_pred             ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC
Q 013050          240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT  315 (450)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~  315 (450)
                      +. ++++.++.+++.|..++++++|+++.++.+.+..    .+..++++||+|...+++.+|++++.|+.++++||+.|+
T Consensus       245 ~~-~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G~i~~igTDh~p~  323 (486)
T PLN02942        245 SI-DAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTDHCPF  323 (486)
T ss_pred             CH-HHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHHHHhcCCceEEEECCCCCC
Confidence            98 8999999999999999999999999999877653    577889999999999999999999999999999999999


Q ss_pred             ChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhc-CCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCC
Q 013050          316 VPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY-GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEA  393 (450)
Q Consensus       316 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~  393 (450)
                      +...++...++|+..+.|+.+.+..++.+++.+.+. .+|++++++++|.|||+++|+ +++|+|++|++|||+++|.++
T Consensus       324 ~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~i~~~~~l~~~t~~pA~~lgl~~~~G~l~~G~~ADlv~vd~~~  403 (486)
T PLN02942        324 NSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPTDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNS  403 (486)
T ss_pred             ChHHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCCCcCCCCcCCEEEEcCCc
Confidence            988887766689999999999999898888766544 599999999999999999999 678999999999999999999


Q ss_pred             ceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050          394 EFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA  449 (450)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~  449 (450)
                      ++++... .+.+... ++||.+..+.++|..|||+|++||++|+++.. ..|+++++
T Consensus       404 ~~~v~~~-~~~s~~~-~~py~g~~l~g~v~~tiv~G~~v~~~g~~~~~~~~G~~~~~  458 (486)
T PLN02942        404 TFTISAK-THHSRID-TNVYEGRRGKGKVEVTISQGRVVWENGELKVVRGSGRYIEM  458 (486)
T ss_pred             cEEEcHH-HccccCC-CCCccCcEeeeeEEEEEECCEEEEECCEEeccCCCceEecC
Confidence            9999866 5566667 99999999999999999999999999999744 57999875

>PRK09059 dihydroorotase; Validated

Probab=100.00  E-value=4.7e-54  Score=413.90  Aligned_cols=406  Identities=23%  Similarity=0.319  Sum_probs=348.5

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN   82 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~   82 (450)
                      .++|+|+||+|++|++.........+.++||++|++|+|||||+|+|+..++..+.+++.+..+.++.+|||+++++| +
T Consensus        22 ~~~v~I~~G~I~~i~~~~~~~~~~~~~~viDa~G~~v~PG~ID~HvH~~~~~~~~~e~~~~~s~aa~~gGvTtv~~~p-~  100 (429)
T PRK09059         22 IGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDARVFVGEPGAEHRETIASASRAAAAGGVTSIIMMP-D  100 (429)
T ss_pred             ceEEEEECCEEEEecCccccccCCCCCeEEECCCCEEeccEEecccccCCCCchhhhhHHHHHHHHHhCCcEEEEecc-C
Confidence            579999999999998753211001356899999999999999999999877666778899999999999999999999 7


Q ss_pred             CCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC-CccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050           83 SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS  161 (450)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (450)
                      +.|.....+.+....+.......+++.+++.+... +.+.+.++..+.+.|+.+++..       +.+..+...+.++++
T Consensus       101 ~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~~~Gv~~f~~~-------~~~~~~~~~l~~~~~  173 (429)
T PRK09059        101 TDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAGEEMTEFGLLRAAGAVAFTDG-------RRSVANTQVMRRALT  173 (429)
T ss_pred             CCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCCcchHHHHHHHhcCcEEEecC-------CcccCCHHHHHHHHH
Confidence            77777888888888777777778888888877654 4456777888888899888742       223456677889999


Q ss_pred             HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050          162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA  241 (450)
Q Consensus       162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~  241 (450)
                      .+++.|.++.+|+++...+.....    +.+......+....|..+|...+.+++.+++.+       +.++|+.|+++.
T Consensus       174 ~~~~~~~~v~~H~E~~~l~~~~~~----~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~-------~~~~hi~hvs~~  242 (429)
T PRK09059        174 YARDFDAVIVHETRDPDLGGNGVM----NEGLFASWLGLSGIPREAEVIPLERDLRLAALT-------RGRYHAAQISCA  242 (429)
T ss_pred             HHHhcCCEEEEecCChhhhcCCCc----CCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH-------CCcEEEEecCCH
Confidence            999999999999999886443222    222222334457789999999999999999977       999999999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhc
Q 013050          242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL  321 (450)
Q Consensus       242 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~  321 (450)
                       ++++.++++++.|+.+++++||||++++.+.+..++..++++||+|...++..+|+++.+|...+++|||.|+....+.
T Consensus       243 -~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~~~kvnPPLR~~~d~~~L~~~l~~g~id~i~sDh~p~~~~~K~  321 (429)
T PRK09059        243 -ESAEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRTEDDRVAMVEAVASGTIDIIVSSHDPQDVDTKR  321 (429)
T ss_pred             -HHHHHHHHHHHCCCCEEEeecHHHHhccHHHHhccCCccEEcCCCCCHHHHHHHHHHHHcCCCcEEEeCCCCCCHHHCc
Confidence             9999999999999999999999999999988877888999999999999999999999999999999999999988764


Q ss_pred             ccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCC
Q 013050          322 LDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH  401 (450)
Q Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~  401 (450)
                         .+|+..+.|+.+++..++.++....+.++++++++++.|.|||+++|++ .|+|++|+.|||+++|.+..|++..+ 
T Consensus       322 ---~~~~~~~~G~~gle~~l~~~~~~v~~~~l~l~~~~~~~s~nPA~~~gl~-~G~l~~G~~ADlvl~d~~~~~~v~~~-  396 (429)
T PRK09059        322 ---LPFSEAAAGAIGLETLLAAALRLYHNGEVPLLRLIEALSTRPAEIFGLP-AGTLKPGAPADIIVIDLDEPWVVDPE-  396 (429)
T ss_pred             ---CChhhCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC-cCcccCCCcCCEEEECCCCCEEECcc-
Confidence               3699999999999999999987767778999999999999999999995 69999999999999999999999988 


Q ss_pred             CcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050          402 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYK  434 (450)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~  434 (450)
                      .+.+... ++||.|..+.++|..||++|++||+
T Consensus       397 ~~~s~~~-~sPf~G~~l~G~v~~ti~~G~~v~~  428 (429)
T PRK09059        397 DLKSRSK-NTPFEEARFQGRVVRTIVAGKTVYE  428 (429)
T ss_pred             cCccCCC-CCCCCCCEEeeEEEEEEECCEEEee
Confidence            8888888 9999999999999999999999986

>PRK08417 dihydroorotase; Provisional

Probab=100.00  E-value=3.9e-54  Score=410.61  Aligned_cols=385  Identities=25%  Similarity=0.310  Sum_probs=326.6

Q ss_pred             EEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCC
Q 013050            6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDP   85 (450)
Q Consensus         6 V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~   85 (450)
                      |+|+||||++|++..      .+.++||+.|++|+|||||+|+|+..++.. .+++.++++.++++|||++++|| ++.|
T Consensus         1 i~I~dG~I~~i~~~~------~~~~viDa~g~~vlPG~ID~HvH~~~~~~~-~e~~~t~s~aA~aGGvTtv~dmp-nt~P   72 (386)
T PRK08417          1 IRIKDGKITEIGSDL------KGEEILDAKGKTLLPALVDLNVSLKNDSLS-SKNLKSLENECLKGGVGSIVLYP-DSTP   72 (386)
T ss_pred             CEEECCEEEEecCCC------CCCeEEECCCCEEccCeeEEeeeeCCCCcC-hhhHHHHHHHHHcCCcEEEEeCC-CCCC
Confidence            689999999998653      256899999999999999999999877655 48899999999999999999999 8888


Q ss_pred             CCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHh
Q 013050           86 STISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR  165 (450)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~  165 (450)
                      .....+.+....+..... ...+..+.... ...+..+++..+.+.|+..++.+.         ..+.+.+.++++.+++
T Consensus        73 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~i~~l~~~Gv~~~k~~~---------~~~~~~l~~~~~~a~~  141 (386)
T PRK08417         73 AIDNEIALELINSAQREL-PMQIFPSIRAL-DEDGKLSNIATLLKKGAKALELSS---------DLDANLLKVIAQYAKM  141 (386)
T ss_pred             CCCCHHHHHHHHHHhhcc-CCcEEEEEEEE-CCCccHHHHHHHHHCCCEEEECCC---------CCCHHHHHHHHHHHHH
Confidence            888877777766655432 11122222222 234457788888899999887631         3578889999999999


Q ss_pred             cCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHH
Q 013050          166 YKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSL  245 (450)
Q Consensus       166 ~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~  245 (450)
                      .|++|.+|+++...+...+..    .+......++...|..+|...+.+++++++++       +.++|+.|+++. +++
T Consensus       142 ~g~~V~~HaEd~~~~~~~~~~----~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~-------~~~lhi~hvS~~-~~~  209 (386)
T PRK08417        142 LDVPIFCRCEDSSFDDSGVMN----DGELSFELGLPGIPSIAETKEVAKMKELAKFY-------KNKVLFDTLALP-RSL  209 (386)
T ss_pred             cCCEEEEeCCCHHHhhHHHHh----cChhhHHhCCCCCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHH
Confidence            999999999998776544432    33334445567889999999999999999987       999999999999 999


Q ss_pred             HHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCC
Q 013050          246 DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEG  325 (450)
Q Consensus       246 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~  325 (450)
                      +.++++++.|..+++++||||++++.+.+..++..++++||+|...+++.+|+++.+|...+++|||.|+....+.   .
T Consensus       210 ~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~---~  286 (386)
T PRK08417        210 ELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKD---L  286 (386)
T ss_pred             HHHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHcc---C
Confidence            9999999999999999999999999988877788899999999999999999999999999999999999877764   3


Q ss_pred             CccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcc
Q 013050          326 NFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVH  404 (450)
Q Consensus       326 ~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~  404 (450)
                      +|+.++.|+.+++..++.++..+. +.+++++++++++|.|||++||+++ |+|++|+.|||+++|.+.++.+...    
T Consensus       287 ~~~~a~~G~~g~e~~~~~~~~~~v~~~~~~~~~~~~~~t~~pA~~lgl~~-G~l~~G~~ADlvi~d~~~~~~~~~~----  361 (386)
T PRK08417        287 AFDEAAFGIDSICEYFSLCYTYLVKEGIITWSELSRFTSYNPAQFLGLNS-GEIEVGKEADLVLFDPNESTIIDDN----  361 (386)
T ss_pred             CHhHCCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCC-CccCCCCcCCEEEEcCCCCeEeCCC----
Confidence            689999999999999999998765 5569999999999999999999954 9999999999999999987776543    


Q ss_pred             cCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050          405 MKHPSISAYLGRRLSGKVLATISRGNLVYK  434 (450)
Q Consensus       405 ~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~  434 (450)
                           ++||.|..+.++|..||++|++||+
T Consensus       362 -----~~p~~g~~~~g~v~~tiv~G~~v~~  386 (386)
T PRK08417        362 -----FSLYSGDELYGKIEAVIIKGKLYLE  386 (386)
T ss_pred             -----CCCccCCEEeccEEEEEECCEEEeC
Confidence                 8999999999999999999999984

>PRK07369 dihydroorotase; Provisional

Probab=100.00  E-value=7.1e-54  Score=410.77  Aligned_cols=397  Identities=27%  Similarity=0.385  Sum_probs=348.1

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      ..++|+|+||+|++|++.....  ..+.++||+.|++|+|||||+|+|+..++..+.+++.+..+.+++.|||+++++| 
T Consensus        20 ~~~~v~I~dg~I~~i~~~~~~~--~~~~~~iDa~G~~vlPG~ID~H~H~~~~~~~~~e~~~s~~~aa~~GGvTtv~~~p-   96 (418)
T PRK07369         20 RIADVLIEDGKIQAIEPHIDPI--PPDTQIIDASGLILGPGLVDLYSHSGEPGFEERETLASLAAAAAAGGFTRVAILP-   96 (418)
T ss_pred             cceeEEEECCEEEEecCCcccC--CCCCEEEECCCCEEecCEEecccccCCCCcCCCccHHHHHHHHHhCCceEEEECC-
Confidence            3479999999999998654211  1356899999999999999999999988888889999999999999999999999 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC-ccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL  160 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (450)
                      ++.|.....+.+....+.+...+.+++.+++.+.... ...++++.++.+.|+.+++.+        .+..+...+.+.+
T Consensus        97 n~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~ei~~l~~~Gv~~f~~~--------~~~~~~~~l~~~~  168 (418)
T PRK07369         97 DTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQGKQLTELAELAAAGVVGFTDG--------QPLENLALLRRLL  168 (418)
T ss_pred             CCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCCCccHhhHHHHHHCCCEEEECC--------CcCCCHHHHHHHH
Confidence            8888888899998888888877889999988876543 345778888888899988731        2345677888999


Q ss_pred             HHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050          161 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD  240 (450)
Q Consensus       161 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~  240 (450)
                      +.+++.|.++.+|+++...+...+.    +.+......+....|..+|...+.+++.+++.+       +.++|+.|+++
T Consensus       169 ~~~~~~~~~v~~H~Ed~~l~~~~~~----~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~-------~~~~hi~HvSs  237 (418)
T PRK07369        169 EYLKPLGKPVALWPCDRSLAGNGVM----REGLLALRLGLPGDPASAETTALAALLELVAAI-------GTPVHLMRIST  237 (418)
T ss_pred             HHHHhcCCeEEEecCChhhhhcCcc----cCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHH-------CCcEEEEeCCC
Confidence            9999999999999999887654433    333334445567889999999999999999987       99999999999


Q ss_pred             hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050          241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK  320 (450)
Q Consensus       241 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~  320 (450)
                      . ++++.++++++.|..+++++||||++++.+.+..++..++++||+|...+++.+|+++.+|...+++|||.|+....+
T Consensus       238 ~-~~~~~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id~i~SDHaP~~~~~K  316 (418)
T PRK07369        238 A-RSVELIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGVIDAIAIDHAPYTYEEK  316 (418)
T ss_pred             H-HHHHHHHHHHHcCCCeEEEecHHHHhccHHHHhccCCCcEECCCCCCHHHHHHHHHHHhcCCCCEEEcCCCCCCHHHc
Confidence            9 999999999999999999999999999999887778889999999999999999999999999999999999998877


Q ss_pred             cccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCC
Q 013050          321 LLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN  399 (450)
Q Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~  399 (450)
                      .   .+|+.++.|+.+.+..++.+++.+. ..+++++++++++|.|||++||++ .|+|++|+.|||+++|.+..|++..
T Consensus       317 ~---~~~~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~~~v~~~s~nPA~~lgl~-~G~i~~G~~ADlvi~d~~~~~~v~~  392 (418)
T PRK07369        317 T---VAFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALSTNPARCLGQE-PPSLAPGQPAELILFDPQKTWTVSA  392 (418)
T ss_pred             c---CCHhHCCCCceeHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCC-cCcccCCCcCCEEEEcCCCCEEECc
Confidence            4   3699999999999999999997655 567999999999999999999995 5999999999999999999999998


Q ss_pred             CCCcccCCCCccccCCceEeeEEEEEEE
Q 013050          400 DHPVHMKHPSISAYLGRRLSGKVLATIS  427 (450)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~v~~v~v  427 (450)
                      + .+.+... ++||+|..+.++|..|||
T Consensus       393 ~-~~~s~~~-~sp~~G~~l~G~v~~t~~  418 (418)
T PRK07369        393 Q-TLHSLSR-NTPWLGQTLKGRVLQTWV  418 (418)
T ss_pred             c-cccCCCC-CCCCCCCEeeeEEEEEEC
Confidence            8 8888888 999999999999999986

>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin

Probab=100.00  E-value=2.7e-53  Score=416.00  Aligned_cols=422  Identities=30%  Similarity=0.447  Sum_probs=344.7

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCC--CcccchHHHHHHHHhCCceEEEeC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--TEWEGFPSGTKAAAAGGITTLIDM   79 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~--~~~~~~~~~~~~~~~~GvT~~~~~   79 (450)
                      .+++|+|+||+|++|++....+   .+.++||+.|++|+|||||+|+|+..+..  ...+++....+.++.+|||+++++
T Consensus        15 ~~~~i~I~~g~I~~ig~~~~~~---~~~~viD~~g~~vlPGlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~GvTtv~d~   91 (447)
T cd01314          15 FKADILIEDGKIVAIGPNLEAP---GGVEVIDATGKYVLPGGIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDF   91 (447)
T ss_pred             eeeeEEEECCEEEEeeCCCCCC---CCceEEECCCCEEecCEEeccccccccccCccCcchHHHHHHHHHhCCCcEEEeC
Confidence            3578999999999998753221   24689999999999999999999976542  456778888999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHH
Q 013050           80 PLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG  159 (450)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~  159 (450)
                      + .+.+.....+.+....+.......+++..+...........+.+.++.+.|+.+++.++.+..   ...++.+.++++
T Consensus        92 ~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~g~~~ik~~~~~~~---~~~~s~~~l~~~  167 (447)
T cd01314          92 A-IPNKGQSLLEAVEKWRGKADGKSVIDYGFHMIITDWTDSVIEELPELVKKGISSFKVFMAYKG---LLMVDDEELLDV  167 (447)
T ss_pred             C-CCCCCCCHHHHHHHHHHHhcCCCcccEEEEEeecCCChHHHHHHHHHHHcCCCEEEEEeccCC---CCCCCHHHHHHH
Confidence            7 555544555555555554444555666655444333334466777777788888998875532   245789999999


Q ss_pred             HHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecC
Q 013050          160 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS  239 (450)
Q Consensus       160 ~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~  239 (450)
                      ++.|+++|+++.+|+++...+........ ..+......+....|...|...+.+++.+++..       +.++|+.|++
T Consensus       168 ~~~a~~~g~~v~~H~E~~~~~~~~~~~~~-~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~-------~~~~~~~H~s  239 (447)
T cd01314         168 LKRAKELGALVMVHAENGDVIAELQKKLL-AQGKTGPEYHALSRPPEVEAEATARAIRLAELA-------GAPLYIVHVS  239 (447)
T ss_pred             HHHHHhcCCeEEEEcCCHHHHHHHHHHHH-HcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCC
Confidence            99999999999999987766554443210 112222233456678889999999999999866       8999999999


Q ss_pred             ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC--C-CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCC
Q 013050          240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP--D-GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV  316 (450)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~  316 (450)
                      +. ++++.++.+++.|..+++++||+++.++.+.+.  . .+...+++||++...++..+|++++.|+.++++||+.|++
T Consensus       240 ~~-~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~~~g~~~~~~pplr~~~~~~~l~~~l~~G~i~~igsDh~~~~  318 (447)
T cd01314         240 SK-EAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALWDGLSSGTLQTVGSDHCPFN  318 (447)
T ss_pred             CH-HHHHHHHHHHHCCCeEEEecCchhheeCHHHhccccccccceEECCCCCChHHHHHHHHHHhCCCeeEEECCCCCCC
Confidence            98 999999999999999999999999999887762  2 5678899999999999999999999999999999999999


Q ss_pred             hhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCc
Q 013050          317 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAE  394 (450)
Q Consensus       317 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~  394 (450)
                      ...++....+|+.++.|+.+++..++.+++... ...++++++++++|.|||++||+ +++|+|++|++|||+|+|.+.+
T Consensus       319 ~~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~~~~G~l~~G~~AD~vi~d~~~~  398 (447)
T cd01314         319 FAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAE  398 (447)
T ss_pred             HHHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCCccCCCCcCCEEEEeCCcC
Confidence            888877656899999999999999999987765 44599999999999999999999 7789999999999999999998


Q ss_pred             eeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC
Q 013050          395 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA  441 (450)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~  441 (450)
                      +++... ++.+... ++||.+..+.++|.+||++|++||++|+++..
T Consensus       399 ~~~~~~-~~~~~~~-~~~~~g~~~~g~v~~t~v~G~~v~~~~~~~~~  443 (447)
T cd01314         399 KTISAD-THHHNVD-YNIFEGMKVKGWPVVTISRGKVVVEDGELVGE  443 (447)
T ss_pred             EEecHH-HhhccCC-CCcccCeEEeeeEEEEEECCEEEEECCEEecc
Confidence            988876 6667777 99999999999999999999999999999954

The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.

>PRK08323 phenylhydantoinase; Validated

Probab=100.00  E-value=3.3e-53  Score=417.14  Aligned_cols=426  Identities=28%  Similarity=0.433  Sum_probs=350.8

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC--CCcccchHHHHHHHHhCCceEEEeC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG--RTEWEGFPSGTKAAAAGGITTLIDM   79 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~--~~~~~~~~~~~~~~~~~GvT~~~~~   79 (450)
                      .+++|+|+||+|++|++.       .+.++||+.|++|+|||||+|+|+..+.  ....+++....+.++++|||+++++
T Consensus        17 ~~~~v~I~~g~I~~i~~~-------~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~GvTt~~d~   89 (459)
T PRK08323         17 YKADVLIEDGKIAAIGAN-------LGDEVIDATGKYVMPGGIDPHTHMEMPFGGTVSSDDFETGTRAAACGGTTTIIDF   89 (459)
T ss_pred             eEEEEEEECCEEEEEecC-------CCceEEECCCCEEeccEEeeeeccccccCCccccCcHHHHHHHHHhCCCCEEEeC
Confidence            357899999999999864       1458999999999999999999997652  2356778888899999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHH
Q 013050           80 PLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG  159 (450)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~  159 (450)
                      + ...+.....+.+....+.......++++.+........+..+++.++++.|+.+++.++.+.+   .+..+.+++.++
T Consensus        90 ~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~---~~~~s~~~l~~~  165 (459)
T PRK08323         90 A-LQPKGQSLREALEAWHGKAAGKAVIDYGFHMIITDWNEVVLDEMPELVEEGITSFKLFMAYKG---ALMLDDDELLRA  165 (459)
T ss_pred             c-CCCCCCChHHHHHHHHHHhccCceEEEEEEEEecCCcHHHHHHHHHHHHcCCCEEEEEEecCC---CCCCCHHHHHHH
Confidence            7 555545555555555555555556777666543333444567788888899999998875532   246789999999


Q ss_pred             HHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecC
Q 013050          160 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS  239 (450)
Q Consensus       160 ~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~  239 (450)
                      ++.|+++|.++..|+++...+........ ..+......+....|...+...+.+++++++.+       +.++|+.|++
T Consensus       166 ~~~a~~~g~~v~~H~e~~~~~~~~~~~~~-~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~-------~~~~~i~H~s  237 (459)
T PRK08323        166 LQRAAELGALPMVHAENGDAIAYLQAKLL-AEGKTGPEYHALSRPPEVEGEATNRAIMLAELA-------GAPLYIVHVS  237 (459)
T ss_pred             HHHHHhcCCEEEEEcCChHHHHHHHHHHH-HcCCCChhhhhccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCC
Confidence            99999999999999987766543332211 222223334566789999999999999999977       8999999999


Q ss_pred             ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC
Q 013050          240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT  315 (450)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~  315 (450)
                      +. ++++.++.+++.|..+++++||+++.++.+.+..    ++..++++||++...++..+|+++++|+.++++||+.|+
T Consensus       238 ~~-~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~~~~~~~~~~g~~~k~~pPlr~~~~~~~l~~~l~~G~i~~i~sDh~p~  316 (459)
T PRK08323        238 CK-EALEAIRRARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATDHCPF  316 (459)
T ss_pred             CH-HHHHHHHHHHHCCCeEEEEcCccceeecHHHhcCCccccccceEECCCCCChHHHHHHHHHhhcCCeeEEECCCCCC
Confidence            98 8999999999999999999999999998877643    467789999999999999999999999999999999999


Q ss_pred             Chhhhcc-cCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCC
Q 013050          316 VPELKLL-DEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPE  392 (450)
Q Consensus       316 ~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~  392 (450)
                      +...++. ...+|+..+.|+.+.+..++.+++.. ....++++++++++|.|||++||+ ++.|+|++|+.|||+|+|.+
T Consensus       317 ~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~lgl~~~~G~l~~G~~ADlvi~d~~  396 (459)
T PRK08323        317 CFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTSTNPAKIFGLYPRKGTIAVGADADIVIWDPN  396 (459)
T ss_pred             ChHHhcccccCCHhhCCCCcchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCcccCCCCcCCEEEEcCC
Confidence            8877653 44578999999999999999998664 455699999999999999999999 77899999999999999999


Q ss_pred             CceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050          393 AEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA  449 (450)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~  449 (450)
                      .++++..+ ++.+... ++||.+..+.++|..|||+|++||++|+++.. ..|++|++
T Consensus       397 ~~~~v~~~-~~~s~~~-~s~~~g~~~~g~v~~viv~G~~v~~~g~~~~~~~~G~~~~~  452 (459)
T PRK08323        397 ATKTISAS-TLHSNVD-YNPYEGFEVTGWPVTTLSRGEVVVEDGEFRGKAGHGRFLKR  452 (459)
T ss_pred             cccccCHH-HHhhcCC-CCcccCcEEeeeEEEEEECCEEEEECCEEeccCCCceEeeC
Confidence            88888877 7777777 89999999999999999999999999999965 57999976

>TIGR02033 D-hydantoinase D-hydantoinase

Probab=100.00  E-value=4.6e-53  Score=416.04  Aligned_cols=430  Identities=28%  Similarity=0.430  Sum_probs=343.1

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC--CCCcccchHHHHHHHHhCCceEEEeC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDM   79 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~--~~~~~~~~~~~~~~~~~~GvT~~~~~   79 (450)
                      ..++|+|+||+|++|++....+   +..++||++|++|+|||||+|+|+..+  +....+++....+.++++|||+++++
T Consensus        15 ~~~~V~I~dg~I~~Ig~~~~~~---~~~~vIDa~G~~vlPGlID~H~H~~~~~~~~~~~e~~~~~s~~a~~~GvTtv~d~   91 (454)
T TIGR02033        15 FQADVLIEGGKIVAVGRNLSPP---DAVEEIDATGKYVMPGGIDVHTHLEMPFGGTVTADDFFTGTKAAAAGGTTTIIDF   91 (454)
T ss_pred             eEEEEEEECCEEEEecCCCCCC---CCCcEEECCCCEEecCEecceeccCcccCCCCCcchHHHHHHHHHhCCCCEEEeC
Confidence            3578999999999998753221   245899999999999999999999765  34456778888899999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHH-HHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHH
Q 013050           80 PLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA-LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE  158 (450)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~  158 (450)
                      + .+.+.......+....+.......+.++.+......+....+. +..+.+.|+..++.++.+.   ..+..+.+.+++
T Consensus        92 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~---~~~~~~~~~l~~  167 (454)
T TIGR02033        92 A-LPHKGESLTEALETWHEKAEGKSVIDYGFHMMITHWNDEVLEEHIPELVEEGITSFKVFMAYK---NLLMVDDEELFE  167 (454)
T ss_pred             c-CCCCCCCHHHHHHHHHHHhccCceEEEEEEecccCCcHHHHHHHHHHHHhcCCcEEEEEeecC---CCCCCCHHHHHH
Confidence            7 5555445555555555544444456666554332233333333 5556678888899887553   224578999999


Q ss_pred             HHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEec
Q 013050          159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL  238 (450)
Q Consensus       159 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~  238 (450)
                      +++.|+++|.++.+|+++............ ..+......+....|...+...+.+++.++...       +.++|++|+
T Consensus       168 ~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~-~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~-------~~~~~i~H~  239 (454)
T TIGR02033       168 ILKRAKELGALLQVHAENGDVIAELQARLL-AQGKTGPEYHALSRPPESEAEAVARAIALAALA-------NAPLYVVHV  239 (454)
T ss_pred             HHHHHHhCCCeEEEEcCCHHHHHHHHHHHH-HcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEEC
Confidence            999999999999999977665443332210 112222223455678888888999999999866       899999999


Q ss_pred             CChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC---CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC
Q 013050          239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD---GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT  315 (450)
Q Consensus       239 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~  315 (450)
                      ++. .+++.++.+++.|..+++++||+++.++...+..   .+...+++||++...+++.+|+++..|+.+++|||+.|+
T Consensus       240 s~~-~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~~~~~~~~~~~~~~pPlr~~~~~~~l~~~l~~G~i~~igtDh~p~  318 (454)
T TIGR02033       240 STA-SAVDEIAEAREKGQPVYGETCPQYLLLDDTIYDKPGFEGAKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPF  318 (454)
T ss_pred             CCH-HHHHHHHHHHHCCCeEEEEcCchheeecHHHhcCcccccceeEECCCCCChhhHHHHHHHhhcCCeEEEECCCCCC
Confidence            998 8899999999999999999999999998887753   456788899999999999999999999999999999999


Q ss_pred             Chhhh-cccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCC
Q 013050          316 VPELK-LLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPE  392 (450)
Q Consensus       316 ~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~  392 (450)
                      +...+ ....+.|+.++.|+.+.+..++.+++... +..++++++++++|.|||++||+ ++.|+|++|+.|||+|+|.+
T Consensus       319 ~~~~k~~~~~~~~~~~~~G~~g~e~~l~~l~~~~v~~~~~~~~~~~~~~t~~pa~~~gl~~~~G~l~~G~~AD~~i~d~~  398 (454)
T TIGR02033       319 NFAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVATGRITLEKFVELTSTNPAKIFNMYPRKGTIAVGSDADIVIWDPN  398 (454)
T ss_pred             CHHHhhhcccCCHhhCCCCCchHHhHHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHcCCCCCCCccccCCcCCEEEEcCC
Confidence            87665 22234688889999999999999987655 45699999999999999999999 66899999999999999999


Q ss_pred             CceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050          393 AEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA  449 (450)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~  449 (450)
                      .++++..+ ++.+... ++||.+..+.++|..|||+|++||++|+++.. ..|+++++
T Consensus       399 ~~~~~~~~-~~~~~~~-~~p~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~~g~~~~~  454 (454)
T TIGR02033       399 RTTVISAE-THHDNAD-YNPFEGFKVQGAVVSVLSRGRVVVEDGQFVGTAGSGRFIKR  454 (454)
T ss_pred             cCeeechH-HhhccCC-CCcccCeEEeeeEEEEEECCEEEEECCEEecCCCCcceecC
Confidence            98888876 6677777 99999999999999999999999999999965 56999874

This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.

>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type

Probab=100.00  E-value=8.5e-53  Score=405.59  Aligned_cols=405  Identities=34%  Similarity=0.495  Sum_probs=346.2

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      +.++|+|+||||++|++... +   .+.++||++|++|+|||||+|+|+..+.....+++.+..+.++.+|||++++++ 
T Consensus         4 ~~~~v~I~~g~I~~i~~~~~-~---~~~~~ida~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~-   78 (411)
T TIGR00857         4 TEVDILVEGGRIKKIGKLRI-P---PDAEVIDAKGLLVLPGFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMP-   78 (411)
T ss_pred             EEEEEEEECCEEEEeeccCC-C---CCCeEEECCCCEEecCEEEcccCCCCCCCccHhHHHHHHHHHHhCCeEEEEEec-
Confidence            56899999999999974221 1   245789999999999999999999865555567788899999999999999998 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCc-cchHHHHHHHHcCCcE--EEEecccCCCCCCCCCCHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA-YNASALEALLNAGVLG--LKSFMCPSGINDFPMTNASHIKE  158 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~l~~  158 (450)
                      ++.+.....+.+....+..+....+++.+++++..... ...+++.++.+.|+.+  ++.+       +.+..+...+.+
T Consensus        79 ~t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~~~Gv~g~~f~~~-------~~~~~~~~~l~~  151 (411)
T TIGR00857        79 NTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTEAYELKEAGAVGRMFTDD-------GSEVQDILSMRR  151 (411)
T ss_pred             CCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEecCCccccHHHHHHHHHCCcEEEEEEeC-------CcccCCHHHHHH
Confidence            77777777888888877777777888888887765543 2466777778889988  5542       224578899999


Q ss_pred             HHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEec
Q 013050          159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL  238 (450)
Q Consensus       159 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~  238 (450)
                      +++.++++|+++.+|+++...+...+...+    ......++...|..+|...+.+++.+++..       +.++|+.|+
T Consensus       152 ~~~~a~~~g~~v~iH~E~~~l~~~~~~~~g----~~~~~~~~~~~p~~aE~~ai~~~~~la~~~-------~~~~~i~Hv  220 (411)
T TIGR00857       152 ALEYAAIAGVPIALHAEDPDLIYGGVMHEG----PSAAQLGLPARPPEAEEVAVARLLELAKHA-------GCPVHICHI  220 (411)
T ss_pred             HHHHHHHcCCEEEEecCCHHHHhhhhhcCC----cccHhhCCCCCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeC
Confidence            999999999999999999887554433222    223345678899999999999999999977       999999999


Q ss_pred             CChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChh
Q 013050          239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPE  318 (450)
Q Consensus       239 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~  318 (450)
                      ++. ++++.++.+++.|..+++++||++++++.+.+..++..++++||+|...++..+|+++.+|...+++||+.|....
T Consensus       221 s~~-~~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~g~i~~i~sDh~p~~~~  299 (411)
T TIGR00857       221 STK-ESLELIVKAKSQGIKITAEVTPHHLLLSEEDVARLDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLE  299 (411)
T ss_pred             CCH-HHHHHHHHHHHcCCcEEEeechhhheecHHHHhCCCccEEEcCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCChH
Confidence            998 9999999999999999999999999999988877888999999999999999999999999999999999999876


Q ss_pred             hhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeC
Q 013050          319 LKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD  398 (450)
Q Consensus       319 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~  398 (450)
                      .+.   .+|+..+.|+.+.+..++.+++...+.+++++++++++|.|||+++|+++.|+|++|+.|||+++|.+.++++.
T Consensus       300 ~k~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~~G~l~~G~~ADlvi~d~~~~~~~~  376 (411)
T TIGR00857       300 EKT---KEFAAAPPGIPGLETALPLLLQLLVKGLISLKDLIRMLSINPARIFGLPDKGTLEEGNPADITVFDLKKEWTIN  376 (411)
T ss_pred             Hcc---CCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHHHHHHhHHHHHHhCCCCCCccCCCCcCCEEEEcCCCCEEEc
Confidence            653   36888999999999999999987777789999999999999999999954599999999999999999988887


Q ss_pred             CCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050          399 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE  435 (450)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~  435 (450)
                      .. ++.+... ++||.|..+.++|..|+++|++||+|
T Consensus       377 ~~-~~~~~~~-~sp~~g~~~~g~v~~tiv~G~~v~~~  411 (411)
T TIGR00857       377 AE-TFYSKAK-NTPFEGMSLKGKPIATILRGKVVYED  411 (411)
T ss_pred             hH-HCccCCC-CCCcCCCEEEeEEEEEEECCEEEecC
Confidence            76 7777777 99999999999999999999999986

All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.

>PRK07575 dihydroorotase; Provisional

Probab=100.00  E-value=1.4e-52  Score=406.67  Aligned_cols=415  Identities=27%  Similarity=0.404  Sum_probs=341.0

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN   82 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~   82 (450)
                      .++|.|+||+|++|++..+.+   ...+++|++|++|+|||||+|+|+..++..+.+++.+..+.+++.|||++++++ +
T Consensus        21 ~~~I~I~dg~I~~ig~~~~~~---~~~~vid~~g~~v~PG~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTt~~dmp-~   96 (438)
T PRK07575         21 LGDVLVEDGKIVAIAPEISAT---AVDTVIDAEGLTLLPGVIDPQVHFREPGLEHKEDLFTASRACAKGGVTSFLEMP-N   96 (438)
T ss_pred             eeeEEEECCEEEEecCCCCCC---CCCeEEECCCCEEcccEEEeeeccCCCCCcCcchHHHHHHHHHhCCEEEEEECC-C
Confidence            478999999999998753321   135789999999999999999999877777788999999999999999999998 7


Q ss_pred             CCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHH
Q 013050           83 SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSV  162 (450)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (450)
                      +.|...+.+.+....+.+.....+++.++++....   ...++..+  .++.+++.|+.... ...+..+...+.+.+  
T Consensus        97 ~~p~~~~~~~~~~~~~~a~~~~~v~~~~~~~~~~~---~l~~l~~~--~~~~g~~~f~~~~~-~~~~~~~~~~~~~~~--  168 (438)
T PRK07575         97 TKPLTTTQAALDDKLARAAEKCVVNYGFFIGATPD---NLPELLTA--NPTCGIKIFMGSSH-GPLLVDEEAALERIF--  168 (438)
T ss_pred             CCCCCCcHHHHHHHHHHhccCcEEEEEEEcccccc---CHHHHHHh--hCCeEEEEEEeeCC-CCcccCcHHHHHHHH--
Confidence            78888888888888777777778888888665432   22233322  36778888764321 111122334444432  


Q ss_pred             HHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChh
Q 013050          163 LARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS  242 (450)
Q Consensus       163 a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~  242 (450)
                       ++.+.++..|+++...+.....   ...+......+....|..+|.+.+.++++++++.       +.++|+.|+++. 
T Consensus       169 -~~~~~~v~~h~e~~~l~~~~~~---~~~g~~~~~~~~~~~p~~aE~~av~~~~~la~~~-------g~~lhi~HiSt~-  236 (438)
T PRK07575        169 -AEGTRLIAVHAEDQARIRARRA---EFAGISDPADHSQIQDEEAALLATRLALKLSKKY-------QRRLHILHLSTA-  236 (438)
T ss_pred             -HhCCCEEEEeCcChHHHHhhhH---hhccCcCcccccccCcHHHHHHHHHHHHHHHHHH-------CCCEEEEECCCH-
Confidence             3568999999998775332111   1122223334556789999999999999999987       999999999988 


Q ss_pred             HHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcc
Q 013050          243 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLL  322 (450)
Q Consensus       243 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~  322 (450)
                      ++++.+++++  +..++++++|+|++++.+.+..++..++++||+|...++..+|+++++|+.++++||+.|++...+. 
T Consensus       237 ~~v~~i~~~k--~~~vt~ev~phhL~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~sDh~p~~~~~k~-  313 (438)
T PRK07575        237 IEAELLRQDK--PSWVTAEVTPQHLLLNTDAYERIGTLAQMNPPLRSPEDNEALWQALRDGVIDFIATDHAPHTLEEKA-  313 (438)
T ss_pred             HHHHHHHHhc--CCCEEEEEchhhheeCHHHHhCCCceEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHcc-
Confidence            9999998876  3679999999999999988777788899999999999999999999999999999999999987764 


Q ss_pred             cCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCC
Q 013050          323 DEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHP  402 (450)
Q Consensus       323 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~  402 (450)
                        .+|+..+.|+.+.+..++.+++...+.++|++++++++|.|||++||+++.|+|++|++|||+|+|.+.++++..+ .
T Consensus       314 --~~~~~~~~G~~g~e~~l~~l~~~~~~~~lsl~~~~~~~s~npAk~lgl~~~G~L~~G~~ADlvi~D~~~~~~v~~~-~  390 (438)
T PRK07575        314 --QPYPNSPSGMPGVETSLPLMLTAAMRGKCTVAQVVRWMSTAVARAYGIPNKGRIAPGYDADLVLVDLNTYRPVRRE-E  390 (438)
T ss_pred             --CCcccCCCCcccHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHcCCCCCCccCCCCcCCEEEEcCCCCEEEchH-H
Confidence              3688889999999999999998877778999999999999999999995579999999999999999998988776 7


Q ss_pred             cccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCcccc
Q 013050          403 VHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL  448 (450)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~  448 (450)
                      +.++.. ++||.|..+.++|..||++|++||++|+++.+..|++++
T Consensus       391 ~~s~~~-~sp~~g~~~~G~v~~tiv~G~~v~~~g~~~~~~~G~~~~  435 (438)
T PRK07575        391 LLTKCG-WSPFEGWNLTGWPVTTIVGGQIVFDRGQVNTEVRGQALT  435 (438)
T ss_pred             ccccCC-CCCCCCCEEeeEEEEEEECCEEEEECCEEccCCCceEee
Confidence            888888 999999999999999999999999999999888899886

>PRK09236 dihydroorotase; Reviewed

Probab=100.00  E-value=2.1e-52  Score=406.92  Aligned_cols=423  Identities=27%  Similarity=0.396  Sum_probs=346.9

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      ..++|+|+||+|++|++....+   ++.+++|++|++|+|||||+|+|+..++....+++.+..+.++.+|||++++++ 
T Consensus        18 ~~~~i~i~~g~I~~i~~~~~~~---~~~~~id~~g~~v~PG~ID~HvH~~~~~~~~~e~~~~~~~aa~~~GvTtv~d~p-   93 (444)
T PRK09236         18 FEGDVLIENGRIAKIASSISAK---SADTVIDAAGRYLLPGMIDDQVHFREPGLTHKGDIASESRAAVAGGITSFMEMP-   93 (444)
T ss_pred             eEeEEEEECCEEEEecCCCCCC---CCCeEEECCCCEECCCEEEcccccccCcccccccHHHHHHHHHhCCcEEEEeCC-
Confidence            3578999999999998653211   356899999999999999999999877666667888999999999999999998 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS  161 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (450)
                      +..|.....+.+....+.......++++++.+..   ....+++.++.+.|+.++|.|+++.. ...+..+.+.+++++ 
T Consensus        94 ~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~e~~~l~~~g~~g~k~~~~~~~-~~~~~~~~~~~~~~~-  168 (444)
T PRK09236         94 NTNPPTTTLEALEAKYQIAAQRSLANYSFYFGAT---NDNLDEIKRLDPKRVCGVKVFMGAST-GNMLVDNPETLERIF-  168 (444)
T ss_pred             CCCCCcCcHHHHHHHHHHhccCeEEEEEEEeccC---cccHHHHHHHHHccCcEEEEEeccCC-CCcccCcHHHHHHHH-
Confidence            7777777788887777766666677888776443   22366777888889999999875421 111233445555554 


Q ss_pred             HHHhcCCcEEEecCChhhhhhhhhhccCc-CCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050          162 VLARYKRPLLVHAEMEKGSERHVKLEDDT-LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD  240 (450)
Q Consensus       162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~  240 (450)
                        +..++++.+|+++...+.......... ........+....|..++...+.++++++++.       +.++|++|+++
T Consensus       169 --~~~~~~v~~H~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~rp~~ae~~av~~~~~la~~~-------~~~~hi~h~st  239 (444)
T PRK09236        169 --RDAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRSAEACYKSSSLAVSLAKKH-------GTRLHVLHIST  239 (444)
T ss_pred             --HhcCCEEEEecCCHHHHHHHHHHHHHhcCCCCChhhccccCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCC
Confidence              445899999998877654322110000 11112223344678888999999999999977       99999999999


Q ss_pred             hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050          241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK  320 (450)
Q Consensus       241 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~  320 (450)
                      . ++++.+++.+..+..+++++|+|+++++.+.+...+..++++||++....+..+++++.+|+.++++||+.|.....+
T Consensus       240 ~-~~~~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~igtDh~p~~~~~k  318 (444)
T PRK09236        240 A-KELSLFENGPLAEKRITAEVCVHHLWFDDSDYARLGNLIKCNPAIKTASDREALRQALADDRIDVIATDHAPHTWEEK  318 (444)
T ss_pred             H-HHHHHHHHHHHCCCCEEEEEchhhhhcCHHHHhccCceEEECCCCCCHHHHHHHHHHHhCCCCcEEECCCCCCCHHHh
Confidence            8 999999998888999999999999999998887778889999999999999999999999999999999999876665


Q ss_pred             cccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCC
Q 013050          321 LLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND  400 (450)
Q Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~  400 (450)
                      .   .+|+..+.|+.+.+..++.+++...+.++|++++++++|.|||++||+++.|+|++|+.|||+++|.+.+++++..
T Consensus       319 ~---~~~~~~~~G~~~~e~~l~~l~~~v~~~~~~~~~~~~~~t~~pA~~lgl~~~G~l~~G~~ADlvi~d~~~~~~~~~~  395 (444)
T PRK09236        319 Q---GPYFQAPSGLPLVQHALPALLELVHEGKLSLEKVVEKTSHAPAILFDIKERGFIREGYWADLVLVDLNSPWTVTKE  395 (444)
T ss_pred             c---CCcccCCCCcccHHHHHHHHHHHHHhcCCCHHHHHHHHHHhHHHhcCCCCCCccccCCcCCEEEEcCCCCEEEchH
Confidence            3   3688889999999999998888777788999999999999999999995579999999999999999998998877


Q ss_pred             CCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCcccc
Q 013050          401 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL  448 (450)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~  448 (450)
                       ++.++.. ++||.|..+.++|.+|||+|++||++|+++....||+++
T Consensus       396 -~~~s~~~-~sp~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~G~~~~  441 (444)
T PRK09236        396 -NILYKCG-WSPFEGRTFRSRVATTFVNGQLVYHNGQLVESCRGQRLE  441 (444)
T ss_pred             -HhcccCC-CCCCCCCEEeeeEEEEEECCEEEEECCEEccCcCceEee
Confidence             7777777 999999999999999999999999999999777899987

>PRK01211 dihydroorotase; Provisional

Probab=100.00  E-value=1.3e-52  Score=398.84  Aligned_cols=392  Identities=26%  Similarity=0.356  Sum_probs=327.9

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      ..++|+|+||||++|++..      ...+++|++| +|+|||||+|+|+..++..+.+++.++++.+++.|||++++|| 
T Consensus        14 ~~~di~I~dGkI~~i~~~~------~~~~~ida~g-~vlPG~ID~HvH~r~pg~~~ked~~s~s~AAaaGGvTtv~dmP-   85 (409)
T PRK01211         14 DYLEIEVEDGKIKSIKKDA------GNIGKKELKG-AILPAATDIHVHFRTPGETEKEDFSTGTLSAIFGGTTFIMDMP-   85 (409)
T ss_pred             EEEEEEEECCEEEEecCCC------CCceEEEecc-EEcCCeEEeeeccCCCCCcccCcHHHHHHHHHcCCcEEEEECC-
Confidence            3579999999999998643      1457899999 9999999999999999998999999999999999999999999 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS  161 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (450)
                      ++.|.....+.+....+.+.....+++.+++.....+.       ++.+.|+.+++.|+.+....    .......+.++
T Consensus        86 nt~P~~~~~e~~~~~~~~a~~~s~vd~~~~~~~~~~~~-------~~~~~g~~~~k~f~~~~~~~----~~~~~~~~~l~  154 (409)
T PRK01211         86 NNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNA-------LILDERSIGLKVYMGGTTNT----NGTDIEGGEIK  154 (409)
T ss_pred             CCCCCCChHHHHHHHHHHhccCceeeEEEEeccCCchh-------hHHhccCcEEEEEcCCCcCC----CccccCHHHHH
Confidence            78888888999988888888887899998876533221       23345999999986542100    00011113446


Q ss_pred             HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050          162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA  241 (450)
Q Consensus       162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~  241 (450)
                      .+++.|.++.+|+++...+......+      .....+....|..+|...+.+++.+++.          ++|+.|+++.
T Consensus       155 ~~~~~g~~v~~H~E~~~l~~~~~~~~------~~~~~~~~~rP~~aE~~ai~~~~~la~~----------~~hi~HvSt~  218 (409)
T PRK01211        155 KINEANIPVFFHAELSECLRKHQFES------KNLRDHDLARPIECEIKAVKYVKNLDLK----------TKIIAHVSSI  218 (409)
T ss_pred             HHHccCCEEEEeccChHHhhhhhhCc------chHhhCCCCCCHHHHHHHHHHHHHHhCC----------CcEEEEecCh
Confidence            66789999999999988755332211      1123356778999999999999999873          4999999997


Q ss_pred             hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhc
Q 013050          242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL  321 (450)
Q Consensus       242 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~  321 (450)
                       +++          ..+++++||||++++.+.  .++..++++||+|...+++.+|+++.+|...+++|||+|+....+ 
T Consensus       219 -~~~----------~~vt~Ev~phhL~l~~~~--~~~~~~kvnPPLRs~~d~~aL~~~l~dG~ID~i~SDHaP~~~~eK-  284 (409)
T PRK01211        219 -DVI----------GRFLREVTPHHLLLNDDM--PLGSYGKVNPPLRDRWTQERLLEEYISGRFDILSSDHAPHTEEDK-  284 (409)
T ss_pred             -hhc----------CceEEEecHHHHcccccc--ccCCceeEcCCCCCHHHHHHHHHHHhCCCCCEEeCCCCCCChhHh-
Confidence             555          269999999999999876  378889999999999999999999999999999999999987665 


Q ss_pred             ccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCC
Q 013050          322 LDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH  401 (450)
Q Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~  401 (450)
                         .+|+.++.|+.+++..++.++....+.++|+++++++.|.|||++||++ .|+|++|+.|||+|+|.+..+++..+ 
T Consensus       285 ---~~~~~a~~G~~gle~~lpl~~~~v~~~~isl~~~v~~~s~nPAki~gl~-kG~l~~G~~ADlvi~D~~~~~~v~~~-  359 (409)
T PRK01211        285 ---QEFEYAKSGIIGVETRVPLFLALVKKKILPLDVLYKTAIERPASLFGIK-KGKIEEGYDADFMAFDFTNIKKINDK-  359 (409)
T ss_pred             ---CCHhhCCCCCCcHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC-CCcccCCCcCCEEEEcCCCeEEEChH-
Confidence               3689999999999999999997666778999999999999999999994 79999999999999999999999877 


Q ss_pred             CcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCccccc
Q 013050          402 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA  449 (450)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~~  449 (450)
                      .+.+... ++||.|..+. +|.+||++|++||++|+++++..|+++++
T Consensus       360 ~~~s~~~-~spf~G~~~~-~v~~tiv~G~~v~~~~~~~~~~~G~~~~~  405 (409)
T PRK01211        360 RLHSKCP-VSPFNGFDAI-FPSHVIMRGEVVIDNYELISERTGKFVPK  405 (409)
T ss_pred             HhhccCC-CCCCCCCEec-cEEEEEECCEEEEECCEEccccCceEecc
Confidence            7788888 9999999987 99999999999999999997779999976

>PRK09060 dihydroorotase; Validated

Probab=100.00  E-value=1e-51  Score=400.86  Aligned_cols=415  Identities=29%  Similarity=0.453  Sum_probs=340.8

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN   82 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~   82 (450)
                      .++|+|+||+|++|++....    ++.+++|++|++|+|||||+|+|+..++....+++.+..+.+++.|||++++++ +
T Consensus        22 ~~~i~i~~g~I~~i~~~~~~----~~~~~iD~~G~~v~PG~ID~HvH~~~~~~~~~e~~~t~~~aa~~gGvTtv~~~p-~   96 (444)
T PRK09060         22 RADIGIRDGRIAAIGDLSGA----SAGEVIDCRGLHVLPGVIDSQVHFREPGLEHKEDLETGSRAAVLGGVTAVFEMP-N   96 (444)
T ss_pred             eeEEEEECCEEEEecCCCCC----CCceEEECCCCEEccCEEeccccccCCCCCccchHHHHHHHHHhCCcEEEEECC-C
Confidence            47899999999999864321    245799999999999999999999877776778899999999999999999998 7


Q ss_pred             CCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050           83 SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLS  161 (450)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (450)
                      ..+.....+.+....+.......+++.+++.....+.   +++.++.. .|+.+++.|+.+.. ...+..+...+.++++
T Consensus        97 ~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~---~~l~el~~~~gv~g~k~fm~~~~-~~~~~~d~~~l~~~~~  172 (444)
T PRK09060         97 TNPLTTTAEALADKLARARHRMHCDFAFYVGGTRDNA---DELAELERLPGCAGIKVFMGSST-GDLLVEDDEGLRRILR  172 (444)
T ss_pred             CCCCCChHHHHHHHHHHhcccceeeEEEEeccCCCCH---HHHHHHHhhcCceEEEEEeccCC-CCcccCCHHHHHHHHH
Confidence            7777788888888777777667888888865544333   33444322 48899998875421 1112345555666544


Q ss_pred             HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050          162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA  241 (450)
Q Consensus       162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~  241 (450)
                         +.+..+.+|+++...+...-.  ..+.+  ....+....|..+|...+.+++.+++..       +.++|++|+++.
T Consensus       173 ---~~~~~v~~H~E~~~l~~~~~~--~~~~g--~~~~~~~~~p~~aE~~av~~~~~la~~~-------~~~lhi~h~st~  238 (444)
T PRK09060        173 ---NGRRRAAFHSEDEYRLRERKG--LRVEG--DPSSHPVWRDEEAALLATRRLVRLARET-------GRRIHVLHVSTA  238 (444)
T ss_pred             ---hCCCeEEEECCCHHHHHHHHH--HHhcC--CcccccccCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCCH
Confidence               358899999998876543211  11111  3334556779999999999999999977       999999999998


Q ss_pred             hHHHHHHHHHHhCCCcEEEecCcchhcccccc-cCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050          242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEE-IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK  320 (450)
Q Consensus       242 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~  320 (450)
                       ++++.++.++.   .+++++|||++.++.+. +..++..++++||++...+++.+|++++.|+.++++||+.|+....+
T Consensus       239 -~~v~~i~~~~~---~vt~ev~ph~l~l~~~~~~~~~~~~~k~~PPlr~~~~~~~l~~al~~G~id~i~sDh~p~~~~~k  314 (444)
T PRK09060        239 -EEIDFLADHKD---VATVEVTPHHLTLAAPECYERLGTLAQMNPPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEK  314 (444)
T ss_pred             -HHHHHHHHhCC---CeEEEeChHHhccCchhhcccCCceEEEeCCCCCHHHHHHHHHHHhCCCccEEecCCCCCCHHHh
Confidence             99999987755   38999999999999877 66678889999999999999999999999999999999999987766


Q ss_pred             cccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCC
Q 013050          321 LLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND  400 (450)
Q Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~  400 (450)
                      .   ..|+.++.|+.+++..++.++..+.+.++|++++++++|.|||+++|+++.|+|++|+.|||+|+|.+..+++...
T Consensus       315 ~---~~~~~~~~G~~g~e~~~~l~~~~v~~g~l~~~~~~~~~s~~pa~~~gl~~~G~l~~G~~ADlvl~d~~~~~~v~~~  391 (444)
T PRK09060        315 A---KPYPASPSGMTGVQTLVPIMLDHVNAGRLSLERFVDLTSAGPARIFGIAGKGRIAVGYDADFTIVDLKRRETITNE  391 (444)
T ss_pred             c---CCcccCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHHhCCCCCCcccCCCcCCEEEEcCCCCEEEChH
Confidence            3   3688889999999999999887655666999999999999999999996589999999999999999998988877


Q ss_pred             CCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCccccc
Q 013050          401 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA  449 (450)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~~  449 (450)
                       ++.++.. ++||.+..+.++|.+||++|++||++|+++....|+++++
T Consensus       392 -~~~s~~~-~sp~~g~~l~g~~~~tiv~G~~v~~~g~~~~~~~G~~~~~  438 (444)
T PRK09060        392 -WIASRCG-WTPYDGKEVTGWPVGTIVRGQRVMWDGELVGPPTGEPVRF  438 (444)
T ss_pred             -HhcccCC-CCCCCCCEEeeeEEEEEECCEEEEECCEEccCCCccCccc
Confidence             7777777 9999999999999999999999999999998888999875

>PRK02382 dihydroorotase; Provisional

Probab=100.00  E-value=1.1e-51  Score=401.88  Aligned_cols=416  Identities=33%  Similarity=0.467  Sum_probs=344.3

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      ..++|+|+||+|++|++....+   ...++||++|++|+|||||+|+|+..++....+++.+..+.++.+|||++++++ 
T Consensus        18 ~~~~v~I~dg~I~~i~~~~~~~---~~~~~id~~g~~v~PG~ID~H~H~~~~g~~~~e~~~~~~~aa~~gGvTtv~~~~-   93 (443)
T PRK02382         18 QPRDVRIDGGKITAVGKDLDGS---SSEEVIDARGMLLLPGGIDVHVHFREPGYTHKETWYTGSRSAAAGGVTTVVDQP-   93 (443)
T ss_pred             eEEEEEEECCEEEEecCCCCCC---CCCeEEECCCCEEcCCEeeeeeeccCCCCCchhhHHHHHHHHHhCCcEEEEECC-
Confidence            4579999999999998643211   246899999999999999999999887766678889999999999999999998 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEE-EEecccCCCCCCCCCCHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL-KSFMCPSGINDFPMTNASHIKEGL  160 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~~  160 (450)
                      ++.+.....+.+....+.......+++.+++...    ...+.+.++.+.|+.++ +.+..+..  +....+.+.+.+++
T Consensus        94 ~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~~~~~----~~~~~l~~l~~~gv~~~gkv~~~~~~--~~~~~~~~~l~~~~  167 (443)
T PRK02382         94 NTDPPTVDGESFDEKAELAARKSIVDFGINGGVT----GNWDPLESLWERGVFALGEIFMADST--GGMGIDEELFEEAL  167 (443)
T ss_pred             CCCCCCChHHHHHHHHHHhCcCceEEEEEEeeec----cchhhHHHHHhcCccceeEEEEEecC--CCcccCHHHHHHHH
Confidence            7777777777777777766666667777665432    12456777888898887 67654321  11235668899999


Q ss_pred             HHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050          161 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD  240 (450)
Q Consensus       161 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~  240 (450)
                      +.+++.|+++.+|+++..........   ..+......+....|..+|...+.+++.+++..       +.++|+.|+++
T Consensus       168 ~~a~~~g~~v~~H~e~~~~~~~~~~~---~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~-------g~~~hi~h~ss  237 (443)
T PRK02382        168 AEAARLGVLATVHAEDEDLFDELAKL---LKGDADADAWSAYRPAAAEAAAVERALEVASET-------GARIHIAHIST  237 (443)
T ss_pred             HHHHhcCCeEEEecCCHHHHHHhhHh---hcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEECCC
Confidence            99999999999999988764432211   111222334456789999999999999999977       99999999999


Q ss_pred             hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050          241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK  320 (450)
Q Consensus       241 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~  320 (450)
                      . ++++.+++++     +++++|||+++++.+.+...+..++++||++...+++.+|+++.+|...+++|||.|.....+
T Consensus       238 ~-~~~~~i~~~~-----vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~g~i~~i~sDh~P~~~~~K  311 (443)
T PRK02382        238 P-EGVDAARREG-----ITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKRREALWERLNDGTIDVVASDHAPHTREEK  311 (443)
T ss_pred             H-HHHHHHHHCC-----cEEEEchhhhhcCHHHHhccCceEEEcCCCCChHHHHHHHHHHhCCCCCEEEcCCCCCCHHHh
Confidence            8 9999998653     899999999999998876677788999999999999999999999999999999999988776


Q ss_pred             cccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCC
Q 013050          321 LLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND  400 (450)
Q Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~  400 (450)
                      .   .+|+.++.|+.+++..++.++....+.+++++++++++|.|||+++|+++.|+|++|+.|||+|+|.+..+.+..+
T Consensus       312 ~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~l~~~~~~~t~~pA~~~g~~~~G~l~~G~~AD~vi~d~~~~~~~~~~  388 (443)
T PRK02382        312 D---ADIWDAPSGVPGVETMLPLLLAAVRKNRLPLERVRDVTAANPARIFGLDGKGRIAEGYDADLVLVDPDAAREIRGD  388 (443)
T ss_pred             c---CChhhCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHcCCCCCCccCCCCcCCEEEEcCCCcEEEcHH
Confidence            4   3699999999999999999987777788999999999999999999996689999999999999999988888776


Q ss_pred             CCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050          401 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA  449 (450)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~  449 (450)
                       .+.++.. ++||.+.... .|.+||++|++||++|+++.+ ..||++++
T Consensus       389 -~~~s~~~-~sp~~g~~~~-~v~~tiv~G~~v~~~~~~~~~~~~G~~~~~  435 (443)
T PRK02382        389 -DLHSKAG-WTPFEGMEGV-FPELTMVRGTVVWDGDDINAKRGRGEFLRG  435 (443)
T ss_pred             -HhcccCC-CCCcCCCEec-eEEEEEECCEEEEECCEEecCCCCceEeCC
Confidence             6777777 9999998765 889999999999999999966 47999986

>PRK09357 pyrC dihydroorotase; Validated

Probab=100.00  E-value=3.1e-50  Score=391.31  Aligned_cols=404  Identities=32%  Similarity=0.468  Sum_probs=335.4

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      ..++|.|+||+|.+|++....    ++.++||++|++|+|||||+|+|+..++....+++....+.++++|||++++++ 
T Consensus        18 ~~~~I~I~dg~I~~i~~~~~~----~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~~~e~~~~~~~~a~~~GvTt~~d~~-   92 (423)
T PRK09357         18 EVADVLIDDGKIAAIGENIEA----EGAEVIDATGLVVAPGLVDLHVHLREPGQEDKETIETGSRAAAAGGFTTVVAMP-   92 (423)
T ss_pred             ceeeEEEECCEEEEeeCCCCC----CCCeEEECCCCEEeCCEEecccccCCCCccccccHHHHHHHHHhCCCeEEEecC-
Confidence            457999999999999864211    356899999999999999999999776666678899999999999999999998 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC-CccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL  160 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (450)
                      ++.|.......+....+.+.....+++..++.+... .....+.+..+.+.|+..++.+       +....+.+.+++++
T Consensus        93 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~-------~~~~~~~~~l~~~~  165 (423)
T PRK09357         93 NTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKGLAGEELTEFGALKEAGVVAFSDD-------GIPVQDARLMRRAL  165 (423)
T ss_pred             CCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEEeCCCCccHHHHHHHHhCCcEEEECC-------CcccCCHHHHHHHH
Confidence            777777777777777777666655667666544322 2234566666667787666542       22345788999999


Q ss_pred             HHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050          161 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD  240 (450)
Q Consensus       161 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~  240 (450)
                      +.|+++|.++.+|+++.......+...    +......+....|...|...+.+++.+++..       +.++|+.|+++
T Consensus       166 ~~a~~~g~~v~iH~ee~~~~~~~~~~~----g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~-------g~~~hi~H~s~  234 (423)
T PRK09357        166 EYAKALDLLIAQHCEDPSLTEGGVMNE----GEVSARLGLPGIPAVAEEVMIARDVLLAEAT-------GARVHICHVST  234 (423)
T ss_pred             HHHHhcCCEEEEeCCCHHHhhcccccC----ChhhHHhCCCCCCHHHHHHHHHHHHHHHHHH-------CCcEEEEeCCC
Confidence            999999999999998876644333222    2222334456778999999999999999977       99999999999


Q ss_pred             hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050          241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK  320 (450)
Q Consensus       241 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~  320 (450)
                      . +..+.++.+++.|+.+++++||++++++.+.+..++..++++||+|....+..+|+++++|+.++++||+.|.+...+
T Consensus       235 ~-~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~~~~l~~~l~~G~~~~i~sDh~p~~~~~k  313 (423)
T PRK09357        235 A-GSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHAPHAREEK  313 (423)
T ss_pred             H-HHHHHHHHHHHcCCCEEEEechHHheEcHHHHhCcCCceEECCCCCCHHHHHHHHHHHHcCCCeEEecCCCCCChHHc
Confidence            8 999999999999999999999999999998877677889999999999999999999999999999999999887666


Q ss_pred             cccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCC
Q 013050          321 LLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN  399 (450)
Q Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~  399 (450)
                      ..   +|+..+.|+.+.+..++.++.... +.+++++++++++|.|||+++|++. |+|++|++|||+|+|.+.++++..
T Consensus       314 ~~---~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~A~~~g~~~-G~i~~G~~AD~~i~d~~~~~~v~~  389 (423)
T PRK09357        314 EC---EFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILGLPA-GPLAEGEPADLVIFDPEAEWTVDG  389 (423)
T ss_pred             cC---CHhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCC-CccCCCCcCCEEEEcCCCCEEEch
Confidence            42   588889999999999999887543 5579999999999999999999954 999999999999999999888876


Q ss_pred             CCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050          400 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE  435 (450)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~  435 (450)
                      . .+.+... ++||.|..+.++|..|||+|++||++
T Consensus       390 ~-~~~~~~~-~~p~~g~~~~g~v~~t~v~G~~v~~~  423 (423)
T PRK09357        390 E-DFASKGK-NTPFIGMKLKGKVVYTIVDGKIVYQD  423 (423)
T ss_pred             h-hcccCCC-CCCCcCCEEeeEEEEEEECCEEEecC
Confidence            6 6777777 99999999999999999999999975

>PRK04250 dihydroorotase; Provisional

Probab=100.00  E-value=5.6e-50  Score=381.44  Aligned_cols=385  Identities=30%  Similarity=0.438  Sum_probs=315.2

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      ..++|+|+||+|.+|++. ..    +..++||+.|++|+|||||+|+|+..++....+++.+..+.++++|||++++++ 
T Consensus        13 ~~~~i~i~~G~I~~i~~~-~~----~~~~~iD~~g~~v~PG~ID~HvH~~~~~~~~~e~~~~~~~aa~~gGvTtv~~~p-   86 (398)
T PRK04250         13 VEGGIGIENGRISKISLR-DL----KGKEVIKVKGGIILPGLIDVHVHLRDFEESYKETIESGTKAALHGGITLVFDMP-   86 (398)
T ss_pred             EEEEEEEECCEEEEeeCC-CC----CCCeEEECCCCEEccCEEeccccccCCCCCcHHHHHHHHHHHHhCCeEEEEECC-
Confidence            358899999999999741 11    245889999999999999999999766666677899999999999999999999 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS  161 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (450)
                      ++.|.....+.+....+.++..+.+++.+++ ....   ..+++.++...   .++.|+.+...    ....+.+...  
T Consensus        87 ~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~---~~~~l~~l~~~---~~k~f~~~~~~----~~~~~~~~~~--  153 (398)
T PRK04250         87 NTKPPIMDEKTYEKRMRIAEKKSYADYALNF-LIAG---NCEKAEEIKAD---FYKIFMGASTG----GIFSENFEVD--  153 (398)
T ss_pred             CCCCCCCcHHHHHHHHHHhCcCceeeEEEEE-ecCC---CHHHHHHHHhh---heEEEEecCCC----chhHHHHHHH--
Confidence            8888888899998888888888889999887 4332   23334444322   35666533210    1122222221  


Q ss_pred             HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050          162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA  241 (450)
Q Consensus       162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~  241 (450)
                       ..+.+..+.+|+++...+.                 .+...|..+|...+.+++.+++.+       +.++|+.|+++.
T Consensus       154 -~~~~~~~v~~H~E~~~~~~-----------------~~~~~p~~aE~~av~r~~~la~~~-------~~~lhi~HvSt~  208 (398)
T PRK04250        154 -YACAPGIVSVHAEDPELIR-----------------EFPERPPEAEVVAIERALEAGKKL-------KKPLHICHISTK  208 (398)
T ss_pred             -HHhcCCeEEEEecChhhhh-----------------cccCCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH
Confidence             2233557999998876522                 134679999999999999999987       999999999998


Q ss_pred             hHHHHHHHHHHhCCCc-EEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050          242 SSSLDLLMEAKTNGDS-ITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK  320 (450)
Q Consensus       242 ~~~~~~~~~~~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~  320 (450)
                       ++++.+++   .|.. +++++||||++++.+.+ .++..++++||+|...+++.+|+++..  ..+++|||.|+....+
T Consensus       209 -~~~~~i~~---~g~~~vt~Ev~ph~L~l~~~~~-~~~~~~k~~PPLR~~~d~~aL~~~l~~--Id~i~sDHaP~~~~~k  281 (398)
T PRK04250        209 -DGLKLILK---SNLPWVSFEVTPHHLFLTRKDY-ERNPLLKVYPPLRSEEDRKALWENFSK--IPIIASDHAPHTLEDK  281 (398)
T ss_pred             -HHHHHHHH---cCCCcEEEEeCHHHhccCHHHH-CCCCceEEcCCCCCHHHHHHHHHhhcc--CCEEEcCCcccCHHHh
Confidence             88888864   4776 99999999999999887 578899999999999999999999964  8889999999987766


Q ss_pred             cccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCC
Q 013050          321 LLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND  400 (450)
Q Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~  400 (450)
                      ..       .+.|+.+++..++.++....+.++|++++++++|.|||++||+++.| |++|+.|||+|+|.+..+++...
T Consensus       282 ~~-------~~~G~~g~e~~lpl~~~~v~~~~lsl~~~v~~~t~npAk~lgl~~~G-L~~G~~ADlvi~D~~~~~~v~~~  353 (398)
T PRK04250        282 EA-------GAAGIPGLETEVPLLLDAANKGMISLFDIVEKMHDNPARIFGIKNYG-IEEGNYANFAVFDMKKEWTIKAE  353 (398)
T ss_pred             hc-------CCCCcchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCcC-ccCCCcCCEEEEcCCCcEEEChh
Confidence            31       24699999999999988767778999999999999999999996579 99999999999999998988877


Q ss_pred             CCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCccc
Q 013050          401 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI  447 (450)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~  447 (450)
                       .+.+... ++||.|..+.++|.+||++|++||++|+++++..|+++
T Consensus       354 -~~~s~~~-~sp~~g~~l~g~v~~tiv~G~~v~~~g~~~~~~~G~~~  398 (398)
T PRK04250        354 -ELYTKAG-WTPYEGFKLKGKVIMTILRGEVVMEDDEIIGKPRGVRI  398 (398)
T ss_pred             -hccccCC-CCCCCCCEEeeEEEEEEECCEEEEECCEEcCCCCCeEC
Confidence             7777777 89999999999999999999999999999988888874

>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.9e-51  Score=366.26  Aligned_cols=430  Identities=27%  Similarity=0.378  Sum_probs=371.3

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC--CCCcccchHHHHHHHHhCCceEEEeC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDM   79 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~--~~~~~~~~~~~~~~~~~~GvT~~~~~   79 (450)
                      ...||+++||.|.+|+++..++   .+.+++|+.|++|+||.||.|+|+..+  +...+|+|..+.+.+++.|+|+++|+
T Consensus        30 ~~aDV~vedGiI~~vg~~l~ip---gg~~~ida~g~~ViPGgID~Hthlq~p~~G~ts~DdF~~GTkAAlaGGtTmiID~  106 (522)
T KOG2584|consen   30 FKADVYVEDGIIKEVGENLIIP---GGVKVIDATGKMVIPGGIDPHTHLQMPFMGMTSVDDFFQGTKAALAGGTTMIIDF  106 (522)
T ss_pred             eeeeEEeccCEEEEecccEEcC---CCceEEecCCcEEecCccCccceeccccCCccchhhhhcccHHHhcCCceEEEEE
Confidence            3579999999999999987665   488999999999999999999999988  88899999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHH
Q 013050           80 PLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKE  158 (450)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~  158 (450)
                      . -..+.....+.++.+..++.++..++|++|.++..|.....+++.-+.+ .|+.+|+.|+.|.   +.++.++++|.+
T Consensus       107 v-lp~~~~slv~afe~wr~~Ad~k~cCDyglhv~It~W~~~v~eem~~l~~ekGvnsF~~fmayk---~~~~v~d~~lye  182 (522)
T KOG2584|consen  107 V-LPDKGTSLVEAFEKWREWADPKVCCDYGLHVGITWWSPSVKEEMEILVKEKGVNSFKFFMAYK---DLYMVRDSELYE  182 (522)
T ss_pred             e-cCCCCchHHHHHHHHHhhcCCceeeeeeeeEeeeecCcchHHHHHHHhhhcCcceEEeeeeec---cccccCHHHHHH
Confidence            7 4444567788889999999999999999999999998877777776654 8999999999885   446889999999


Q ss_pred             HHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEec
Q 013050          159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL  238 (450)
Q Consensus       159 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~  238 (450)
                      .++..++.|...++|+++.+.+.+.-+..- ..+...-..+..++|+..|.+++.+++.++.+.       ++|+.++|+
T Consensus       183 ~l~~~~~lgala~vHAEngd~iae~q~~~l-~~gitgPEgh~lSRPee~EaEA~~rai~ia~~~-------ncPlyvvhV  254 (522)
T KOG2584|consen  183 ALKVCAELGALAMVHAENGDAIAEGQQRLL-ELGITGPEGHELSRPEELEAEATNRAITIARQA-------NCPLYVVHV  254 (522)
T ss_pred             HHHHHhhcchhheehhhcchhhhhhhhHHH-HcCCcCcccccccCchhhhHHHHHHHHHHHHhc-------CCCcceEEE
Confidence            999999999999999999888765433221 111222223556899999999999999999987       888999999


Q ss_pred             CChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCChh-hHHHHHHHHhcCCeeEEcCCCC
Q 013050          239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDAA-NKEKLWEALMDGHIDMLSSDHS  313 (450)
Q Consensus       239 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~l~~~~~~g~~~~~gtD~~  313 (450)
                      .+. .+.+.+..+++.|-.+..++....+..+...+..    ....+.++||++... ..+.|+.+|+.|..-..+||++
T Consensus       255 msk-saa~~Ia~aRk~g~~v~gepita~l~~dg~hy~~~~w~~Aa~~v~sPPlr~d~~t~~~L~~lLa~g~L~~tgSdhc  333 (522)
T KOG2584|consen  255 MSK-SAADAIALARKKGRVVFGEPITASLGTDGSHYWSKDWDHAAAFVTSPPLRPDPTTPDGLMDLLAEGDLQLTGSDHC  333 (522)
T ss_pred             eeh-hHHHHHHHHHhcCceeecccchhhhcccchhhccCChhhcceeeeCCCCCCCCCCHHHHHHHHhcCccceeecCCC
Confidence            887 8899999999888777777766666666654322    356788999997554 7888999999999999999999


Q ss_pred             CCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh-cCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeC
Q 013050          314 PTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEP  391 (450)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~  391 (450)
                      +++...+.+..++|...|+|..+++.+++..|..... ..|++.+.++..+.|.|+++++ +++|+|++|.+||+||||+
T Consensus       334 tf~~~qKalgKddFt~ip~GvnGvedrMsviwekgv~~G~md~~~fVavtstnaAkifnlYprKGrIavGsDADiVIwdp  413 (522)
T KOG2584|consen  334 TFTTEQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDP  413 (522)
T ss_pred             CCCHHHHhhccCccccCCCccccccccceeeeehhcccCccCcccEEEEecccchhheeccCcCceecccCCCcEEEECC
Confidence            9999999999999999999999999999999988665 4589999999999999999999 9999999999999999999


Q ss_pred             CCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc-CCCCCccccc
Q 013050          392 EAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA-PAACGSPILA  449 (450)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~-~~~~g~~~~~  449 (450)
                      +...++... .-.+... .+.|+|....+.+.-|+..|++||.+|++. ....||||..
T Consensus       414 ~at~tIS~~-th~~~~d-~NifEGm~~~G~plvtIsrGriv~eng~~~v~~g~G~fip~  470 (522)
T KOG2584|consen  414 NATKTISAK-THHSAND-FNIFEGMTVHGVPLVTISRGRVVYENGNLVVTEGSGRFIPR  470 (522)
T ss_pred             CcceEeccc-ccccccc-ceeecCcEecceeEEEEeCCeEEEecCcEEEecCCCceeeC
Confidence            999999887 6666666 899999999999999999999999999998 4588999864

>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis

Probab=100.00  E-value=1.7e-47  Score=360.55  Aligned_cols=361  Identities=34%  Similarity=0.460  Sum_probs=310.8

Q ss_pred             CCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc
Q 013050           36 EAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV  115 (450)
Q Consensus        36 g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (450)
                      |++|+||+||+|+|+..++..+++++.++.+.+++.|||++++|| ++.|.....+.+....+.++..+.+++.+++.+.
T Consensus         1 G~~vlPG~iD~HvH~r~pg~~~~ed~~s~t~aA~~GGvTtv~~mP-nt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~~~   79 (361)
T cd01318           1 GLLILPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMP-NTKPPTTTAEALYEKLRLAAAKSVVDYGLYFGVT   79 (361)
T ss_pred             CCEEecCeeEeeecCCCCCCCccCcHHHHHHHHHcCCCEEEEECC-CCCCCCCcHHHHHHHHHHhccCceeEEEEEEeec
Confidence            689999999999999998888899999999999999999999999 8888889999998888888877789999887654


Q ss_pred             CCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050          116 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS  195 (450)
Q Consensus       116 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~  195 (450)
                      ..     +.+.++.+.|+.+++.|+.+... . ...+...+.++++.+.   .++.+|+++...+.......+.      
T Consensus        80 ~~-----~~l~~~~~~~~~g~k~f~~~~~~-~-~~~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~~------  143 (361)
T cd01318          80 GS-----EDLEELDKAPPAGYKIFMGDSTG-D-LLDDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELKG------  143 (361)
T ss_pred             Ch-----hhHHHHHHhhCcEEEEEEecCCC-C-cCCCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhhh------
Confidence            33     35666677788899998754221 1 1257788888887764   7899999998875544332221      


Q ss_pred             cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050          196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP  275 (450)
Q Consensus       196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~  275 (450)
                      ...+..+.|..+|...+.+++.+++..       +.++|+.|+++. ++++.+++++   ..+++++||++++++.+.+.
T Consensus       144 ~~~~~~~~P~~aE~~av~r~~~la~~~-------~~~~hi~Hvs~~-~~~~~i~~~k---~~vt~ev~ph~L~l~~~~~~  212 (361)
T cd01318         144 ESAHPRIRDAEAAAVATARALKLARRH-------GARLHICHVSTP-EELKLIKKAK---PGVTVEVTPHHLFLDVEDYD  212 (361)
T ss_pred             ccCCCCcCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHhC---CCeEEEeCHHHhhcCHHHHh
Confidence            114457889999999999999999977       999999999998 8999998876   57999999999999988876


Q ss_pred             CCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCH
Q 013050          276 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL  355 (450)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~  355 (450)
                      .++..++++||+|...+++.+|+++++|..++++||+.|.....+.   ..|+.++.|+.+.+..++.++....+.++++
T Consensus       213 ~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~---~~~~~a~~G~~g~e~~l~~~~~~v~~~~l~l  289 (361)
T cd01318         213 RLGTLGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEKR---KGYPAAPSGIPGVETALPLMLTLVNKGILSL  289 (361)
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHhCCCCCEEeeCCCCCCHHHcc---CChhhCCCCCccHHHHHHHHHHHHHcCCCCH
Confidence            6788999999999999999999999999999999999999877663   3688999999999999998887777778999


Q ss_pred             HHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECC
Q 013050          356 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG  429 (450)
Q Consensus       356 ~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G  429 (450)
                      +++++++|.|||+++|+++.|+|++|+.|||+|+|.+..+++..+ .+.+... ++||.|..+.++|..||++|
T Consensus       290 ~~a~~~~t~nPA~~lgl~~~G~i~~G~~ADlvv~d~~~~~~v~~~-~~~s~~~-~tp~~G~~l~G~v~~t~~~G  361 (361)
T cd01318         290 SRVVRLTSHNPARIFGIKNKGRIAEGYDADLTVVDLKEERTIRAE-EFHSKAG-WTPFEGFEVTGFPVMTIVRG  361 (361)
T ss_pred             HHHHHHHhHHHHHHhCCCCCCccCCCCcCCEEEEeCCCCEEECHH-HccccCC-CCCCCCCEEeeEEEEEEeCc
Confidence            999999999999999995579999999999999999999999877 7777777 99999999999999999998

This group contains the archeal members of the DHOase family.

>PRK00369 pyrC dihydroorotase; Provisional

Probab=100.00  E-value=1.1e-46  Score=356.30  Aligned_cols=374  Identities=28%  Similarity=0.338  Sum_probs=303.2

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEec-CCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDY-GEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~-~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      ++.|.+++++|..|++..  +   .+.+++|+ +|++|+|||||+|+|+..++..+++++.++++.+++.|||++++|| 
T Consensus        13 ~~~~~~~~~~~~~i~~~~--~---~~~~~id~~~G~~vlPG~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mP-   86 (392)
T PRK00369         13 KEIKEICINFDRRIKEIK--S---RCKPDLDLPQGTLILPGAIDLHVHLRGLKLSYKEDVASGTSEAAYGGVTLVADMP-   86 (392)
T ss_pred             CceEEEeeeeeeeEeecc--C---CCCceeecCCCCEEeCCEEEcccccCCCCCcccccHHHHHHHHHhCCcEEEEECC-
Confidence            456788899999888752  1   36789999 6999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS  161 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (450)
                      ++.|.....+.+....+.+...+.+++.+++.....    .+   ++.+.|+.+++.|.     ++  ...    .+.++
T Consensus        87 nt~P~~~~~~~l~~~~~~a~~~~~vd~~~~~~~~~~----~~---el~~~~~~g~k~f~-----~~--~~~----~~~~~  148 (392)
T PRK00369         87 NTIPPLNTPEAITEKLAELEYYSRVDYFVYSGVTKD----PE---KVDKLPIAGYKIFP-----ED--LER----EETFR  148 (392)
T ss_pred             CCCCCCChHHHHHHHHHHhCcCCeEEEEEEeeccCC----HH---HHHHhhCceEEEEC-----CC--Cch----HHHHH
Confidence            888888889999988888888888999988755321    22   33445788888874     11  122    23444


Q ss_pred             HHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050          162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA  241 (450)
Q Consensus       162 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~  241 (450)
                      .+.+++.++.+|+++...+...               ....+|..+|...+.++..+            .++|+.|+++.
T Consensus       149 ~~~~~~~~v~~HaE~~~l~~~~---------------~~~~rp~~aE~~ai~~~~~~------------~~lhi~HvSt~  201 (392)
T PRK00369        149 VLLKSRKLKILHPEVPLALKSN---------------RKLRRNCWYEIAALYYVKDY------------QNVHITHASNP  201 (392)
T ss_pred             HHHHhCCEEEEeCCCHHHhhcc---------------hhcccCHHHHHHHHHHHHHh------------CCEEEEECCCH
Confidence            4555669999999987753311               11245666676665555544            35999999997


Q ss_pred             hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhc
Q 013050          242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL  321 (450)
Q Consensus       242 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~  321 (450)
                       +++   +.+++.|  +++++||||++++.+    ++..++++||+|...+++.+|+++.+  ..+++|||.|+....+ 
T Consensus       202 -~~v---~~ak~~g--vt~Ev~pHhL~l~~~----~~~~~k~~PPLR~~~dr~aL~~~l~~--id~i~SDHaP~~~~~K-  268 (392)
T PRK00369        202 -RTV---RLAKELG--FTVDITPHHLLVNGE----KDCLTKVNPPIRDINERLWLLQALSE--VDAIASDHAPHSSFEK-  268 (392)
T ss_pred             -HHH---HHHHHCC--CeEEechhHheeccC----CCCceEEeCCCCCHHHHHHHHHHHHh--CCEEEeCCCCCCHHHc-
Confidence             654   4555566  788999999999875    36679999999999999999999998  7899999999987776 


Q ss_pred             ccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCC
Q 013050          322 LDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH  401 (450)
Q Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~  401 (450)
                        ..+|+.++.|+.+++..++.++....+.+++++++++++|.|||+++|++ .|.|++|+.|||+++|.+ .+++  + 
T Consensus       269 --~~~f~~~~~Gi~GlE~~lpll~~~v~~~~lsl~~~v~~~s~nPA~ilgl~-~g~i~~G~~ADlvi~d~~-~~~~--~-  341 (392)
T PRK00369        269 --LQPYEVCPPGIAALSFTPPFIYTLVSKGILSIDRAVELISTNPARILGIP-YGEIKEGYRANFTVIQFE-DWRY--S-  341 (392)
T ss_pred             --cCCHhhCCCCCeeHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC-CCccCCCCccCEEEEeCC-ceeE--c-
Confidence              34699999999999999999988777778999999999999999999995 488999999999999987 5664  3 


Q ss_pred             CcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc-CCCCCcccc
Q 013050          402 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA-PAACGSPIL  448 (450)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~-~~~~g~~~~  448 (450)
                      ...+... ++||.|..+.++|.+||++|++||++|+++ .++.|++=+
T Consensus       342 ~~~sk~~-~sp~~G~~l~G~v~~ti~~G~~v~~~~~~~~~~g~G~~~~  388 (392)
T PRK00369        342 TKYSKVI-ETPLDGFELKASVYATIVQGKLAYLEGEVFPVKGINPFGE  388 (392)
T ss_pred             cccccCC-CCCCCCCEeeeEEEEEEECCEEEEECCeEecCCCCCCCCc
Confidence            5667777 999999999999999999999999999999 447787644

>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis

Probab=100.00  E-value=2.2e-45  Score=350.31  Aligned_cols=371  Identities=35%  Similarity=0.502  Sum_probs=319.4

Q ss_pred             CcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEE
Q 013050           29 GQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV  108 (450)
Q Consensus        29 ~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (450)
                      .++||++|++|+||+||+|+|+..+.....+++.+..+.++.+|||++++++ +..|.....+.+....+.+.....+++
T Consensus         2 ~~~iD~~g~~vlPG~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~   80 (374)
T cd01317           2 AEVIDAEGKILAPGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMP-NTNPVIDNPAVVELLKNRAKDVGIVRV   80 (374)
T ss_pred             CeEEECCCCEEecCEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECC-CCCCCCCCHHHHHHHHHHhccCCceeE
Confidence            4789999999999999999999988777788999999999999999999999 777888888888888777777666777


Q ss_pred             EEeccccCCCcc-chHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhc
Q 013050          109 GFWGGLVPENAY-NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLE  187 (450)
Q Consensus       109 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~  187 (450)
                      .+++.+...... .++++..+.+.|+.+++.+       +.+..+...+.++++.+++.|.++.+|+++...+...++  
T Consensus        81 ~~~~~~~~~~~~~~~~~i~~l~~~G~~~~k~~-------~~~~~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~~~~--  151 (374)
T cd01317          81 LPIGALTKGLKGEELTEIGELLEAGAVGFSDD-------GKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGVM--  151 (374)
T ss_pred             EEEEEEeeCCCcccHHHHHHHHHCCcEEEEcC-------CcCCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhccCc--
Confidence            777766554433 4778888888999999853       223567888999999999999999999988887554333  


Q ss_pred             cCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchh
Q 013050          188 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL  267 (450)
Q Consensus       188 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~  267 (450)
                        +.+......++...|..++...+.++++++++.       +.++|+.|+++. ++++.++++++.|+.+++++++|++
T Consensus       152 --~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~-------~~~i~i~h~ss~-~~l~~i~~~~~~G~~~~~e~~~h~L  221 (374)
T cd01317         152 --NEGKVASRLGLPGIPPEAETIMVARDLELAEAT-------GARVHFQHLSTA-RSLELIRKAKAKGLPVTAEVTPHHL  221 (374)
T ss_pred             --cCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHCCCCEEEEecHHHH
Confidence              223333444567788888888999999999987       899999999998 9999999999999999999999999


Q ss_pred             cccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH
Q 013050          268 AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY  347 (450)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  347 (450)
                      .++.+.+...+..++++||++....+..++++++.|+.++++||+.|.+...++.   +|+..+.|+.+.+..++.+++.
T Consensus       222 ~ld~~~~~~~~~~~k~~Pplr~~~~~~~l~~~~~~G~i~~igsDh~p~~~~~k~~---~~~~~~~Gi~g~e~~l~~~~~~  298 (374)
T cd01317         222 LLDDEALESYDTNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDL---PFAEAPPGIIGLETALPLLWTL  298 (374)
T ss_pred             hcCHHHHhccCCceEEcCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC---CHhhCCCcHhHHHHHHHHHHHH
Confidence            9999887777888999999999999999999999999999999999998776643   5888899999999999998887


Q ss_pred             HHh-cCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEE
Q 013050          348 GRK-YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT  425 (450)
Q Consensus       348 ~~~-~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v  425 (450)
                      +.+ ..+|++++++++|.|||+++|++ .|+|++|+.|||+++|.+.++++..+ .+.+... ++||+|..+.++|.+|
T Consensus       299 ~~~~~~~~~~~~~~~~t~npA~~lgl~-~G~l~~G~~ADlvi~d~~~~~~~~~~-~~~s~~~-~sp~~G~~l~g~~~~t  374 (374)
T cd01317         299 LVKGGLLTLPDLIRALSTNPAKILGLP-PGRLEVGAPADLVLFDPDAEWIVDEE-TFRSKSK-NTPFDGQKLKGRVLAT  374 (374)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHhCCC-CCcccCCCcCCEEEECCCCCEEEChh-hccccCC-CCCCCCCEEeEEEEEC
Confidence            654 45899999999999999999995 49999999999999999999999888 7888888 9999999999998765

This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.

>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids

Probab=100.00  E-value=1.9e-45  Score=344.76  Aligned_cols=336  Identities=36%  Similarity=0.601  Sum_probs=296.3

Q ss_pred             CEEeccceeeccccCCCCCC-cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc
Q 013050           37 AVIMPGLIDVHAHLDDPGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV  115 (450)
Q Consensus        37 ~~v~PG~iD~H~H~~~~~~~-~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (450)
                      ++|+||+||+|+|+..++.. +++++.++.+.+++.|||++++|| ++.|.....+.+....+.+...+.+++.+++...
T Consensus         1 ~~vlPG~iD~HvH~r~pg~~~~~e~~~t~t~aA~~GG~Ttv~~mp-n~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~   79 (337)
T cd01302           1 LLVLPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMP-NTGPPPIDLPAIELKIKLAEESSYVDFSFHAGIG   79 (337)
T ss_pred             CEecCCeeEeeeccCCCCCCCchhHHHHHHHHHHhCCCcEEEECC-CCCCCCCcHHHHHHHHHHhCcCcEeeEEEEEecc
Confidence            57999999999999988876 789999999999999999999999 8888888888888888888777788999887665


Q ss_pred             CCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050          116 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS  195 (450)
Q Consensus       116 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~  195 (450)
                      ..  ...+++.++.+.|+.++|.|+.+... ..+..+.+.+.+.++.+++.|+++.+|++                    
T Consensus        80 ~~--~~~~el~~l~~~Gv~g~K~f~~~~~~-~~~~~~~~~l~~~~~~~~~~g~~v~~H~E--------------------  136 (337)
T cd01302          80 PG--DVTDELKKLFDAGINSLKVFMNYYFG-ELFDVDDGTLMRTFLEIASRGGPVMVHAE--------------------  136 (337)
T ss_pred             Cc--cCHHHHHHHHHcCCcEEEEEEeccCC-CccccCHHHHHHHHHHHHhcCCeEEEeHH--------------------
Confidence            53  25667888888999999998765321 11256788999999999999999999992                    


Q ss_pred             cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050          196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP  275 (450)
Q Consensus       196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~  275 (450)
                                        +++.++++.       +.++|+.|+++. ++++.++++++.|..+++++||++++++.+.+.
T Consensus       137 ------------------r~~~la~~~-------g~~l~i~Hiss~-~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~  190 (337)
T cd01302         137 ------------------RAAQLAEEA-------GANVHIAHVSSG-EALELIKFAKNKGVKVTCEVCPHHLFLDESMLR  190 (337)
T ss_pred             ------------------HHHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHCCCcEEEEcChhhheeCHHHhh
Confidence                              567777765       899999999998 999999999999999999999999999988877


Q ss_pred             CCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCH
Q 013050          276 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL  355 (450)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~  355 (450)
                      .++..++++||+|...+++.+|+++++|...+++||+.|.....+... ++|+.++.|+.+.+..++.++....+.++++
T Consensus       191 ~~~~~~k~~Pplr~~~~~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~-~~~~~a~~G~~g~e~~l~~~~~~~~~~~i~~  269 (337)
T cd01302         191 LNGAWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPGLETRLPILLTEGVKRGLSL  269 (337)
T ss_pred             CCCceEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHhccC-CCcccCCCCcccHHHHHHHHHHHHHhcCCCH
Confidence            778889999999999999999999999999999999999987765432 4689999999999999999998887889999


Q ss_pred             HHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEE
Q 013050          356 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT  425 (450)
Q Consensus       356 ~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v  425 (450)
                      +++++++|.|||+++|++..|+|++|+.|||+|+|.+..+++..+ ++.+... ++||+|..+.++|..|
T Consensus       270 ~~~~~~~s~~pA~~~gl~~~g~i~~G~~ADlvi~d~~~~~~v~~~-~~~s~~~-~sp~~G~~l~G~v~~t  337 (337)
T cd01302         270 ETLVEILSENPARIFGLYPKGTIAVGYDADLVIVDPKKEWKVTAE-EIESKAD-WTPFEGMEVTGKPVST  337 (337)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCccccCCcCCEEEEeCCCcEEEcHH-HhcccCC-CCCcCCcEEEEEEEEC
Confidence            999999999999999994479999999999999999999999888 8888888 9999999999998865

Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.

>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis

Probab=100.00  E-value=9e-41  Score=310.94  Aligned_cols=339  Identities=27%  Similarity=0.448  Sum_probs=277.7

Q ss_pred             CEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccC
Q 013050           37 AVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP  116 (450)
Q Consensus        37 ~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (450)
                      .+|+|||||.|+|+..++..+++++.++++.+++.|||++++|| ++.|.....+.+....+.++..+.+++.+++....
T Consensus         2 ~~vlPG~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~dmP-nt~P~~~~~~~~~~~~~~a~~~s~vd~~~~~~~~~   80 (344)
T cd01316           2 TIRLPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMP-NTNPSIVDVASLKLVQSLAQAKARCDYAFSIGATS   80 (344)
T ss_pred             eEEeCCeEEeeeccCCCCcCCcChHHHHHHHHHhCCCeEEEECC-CCCCCCCCHHHHHHHHHHhccCcEEeEEEEeeecC
Confidence            47999999999999999888899999999999999999999999 88888888999988888888888899999876655


Q ss_pred             CCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcccc
Q 013050          117 ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY  196 (450)
Q Consensus       117 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~  196 (450)
                      .+..   .+.++.. .+.+++.|..+.. .... .+.....+....+...+.++..|+++.                   
T Consensus        81 ~~~~---~~~~l~~-~~~g~k~f~~~~~-~~~~-~~~~~~~~~~~~~~~~~~p~~~~~e~~-------------------  135 (344)
T cd01316          81 TNAA---TVGELAS-EAVGLKFYLNETF-STLI-LDKITAWASHFNAWPSTKPIVTHAKSQ-------------------  135 (344)
T ss_pred             CCHH---HHHHHHh-ccCeEEEEECCCC-CCCc-cchHHHHHHHHHhcccCCCeEEehhhH-------------------
Confidence            4432   3444433 3567887764321 0101 122222233334445578888888443                   


Q ss_pred             ccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC
Q 013050          197 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD  276 (450)
Q Consensus       197 ~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~  276 (450)
                                    .+.+++.+++.+       +.++|+.|+++. ++++.++++++.|..+++++||||+.++.+.+..
T Consensus       136 --------------~~~~~l~la~~~-------g~~lhi~HiSt~-~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~  193 (344)
T cd01316         136 --------------TLAAVLLLASLH-------NRSIHICHVSSK-EEINLIRLAKARGLKVTCEVSPHHLFLSQDDLPR  193 (344)
T ss_pred             --------------HHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHHHHCCCcEEEEechHHeeccHHHhhc
Confidence                          356788999876       999999999999 9999999999999999999999999999887644


Q ss_pred             CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHH
Q 013050          277 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE  356 (450)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~  356 (450)
                        ..++++||+|...+++.||+++.  ...+++|||+|+....+..   .  ..+.|+.+++..++.+++.+.+.+++++
T Consensus       194 --~~~k~~PPLR~~~dr~aL~~~l~--~id~i~SDHaP~~~~~K~~---~--~a~~G~~g~e~~lpl~~~~v~~~~i~l~  264 (344)
T cd01316         194 --GQYEVRPFLPTREDQEALWENLD--YIDCFATDHAPHTLAEKTG---N--KPPPGFPGVETSLPLLLTAVHEGRLTIE  264 (344)
T ss_pred             --CCceeCCCCcCHHHHHHHHHHHh--cCCEEEcCCCCCCHHHhcC---C--CCCCCcccHHHHHHHHHHHHHcCCCCHH
Confidence              46899999999999999999996  4779999999998766532   1  6678999999999999986666689999


Q ss_pred             HHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecC
Q 013050          357 QLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG  436 (450)
Q Consensus       357 ~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g  436 (450)
                      ++++..+.|||++||++.      + .+||+|+|.+..|++..+ .+.+... ++||+|..+.++|.+||++|++||++|
T Consensus       265 ~l~~~~s~nPAk~~gl~~------~-~~~lvi~d~~~~~~v~~~-~~~s~~~-~sp~~G~~l~G~v~~ti~rG~~v~~~g  335 (344)
T cd01316         265 DIVDRLHTNPKRIFNLPP------Q-SDTYVEVDLDEEWTIPKN-PLQSKKG-WTPFEGKKVKGKVQRVVLRGETAFIDG  335 (344)
T ss_pred             HHHHHHHHhHHHHhCCCC------C-CCCEEEEeCCCcEEEChh-hccccCC-CCCCCCCEEeeEEEEEEECCEEEEECC
Confidence            999999999999999931      2 347999999999999888 7888888 999999999999999999999999999


Q ss_pred             cccCC
Q 013050          437 NHAPA  441 (450)
Q Consensus       437 ~~~~~  441 (450)
                      +++..
T Consensus       336 ~~~~~  340 (344)
T cd01316         336 EIVAP  340 (344)
T ss_pred             EEccC
Confidence            98854

Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.

>PRK09061 D-glutamate deacylase; Validated

Probab=100.00  E-value=2.5e-40  Score=324.74  Aligned_cols=374  Identities=22%  Similarity=0.235  Sum_probs=269.6

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN   82 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~   82 (450)
                      .++|.|+||+|++|++...     .+.++||++|++|+|||||+|+|...+.         ..+..+..|||+++++..+
T Consensus        38 ~~~v~I~~G~I~~ig~~~~-----~~~~viD~~g~~v~PG~ID~H~H~~~~~---------~~~~~~~~GvTtvv~~~~~  103 (509)
T PRK09061         38 VRDVGIKGGKIAAVGTAAI-----EGDRTIDATGLVVAPGFIDLHAHGQSVA---------AYRMQAFDGVTTALELEAG  103 (509)
T ss_pred             cceEEEECCEEEEecCCCC-----CCCeEEeCCCCEEecCeEeeeeCCCCCc---------cchhhccCCceeEEeeccC
Confidence            3689999999999987532     2568999999999999999999986543         2455688899999998312


Q ss_pred             CCCCCCcHHHHHHHHHHHh-cCCceEEEEecccc-------C-------------------CC-----ccchHHHHHHH-
Q 013050           83 SDPSTISTETLKLKVDAAE-KRIYVDVGFWGGLV-------P-------------------EN-----AYNASALEALL-  129 (450)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~-------------------~~-----~~~~~~~~~~~-  129 (450)
                      ..|.       ....+... ....+++..+.+..       .                   ..     .++++++.++. 
T Consensus       104 ~~p~-------~~~~~~~~~~~~~vn~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~m~~ll~  176 (509)
T PRK09061        104 VLPV-------ARWYAEQAGEGRPLNYGASVGWTPARIAVLTGPQAEGTIADFGKALGDPRWQERAATPAELAEILELLE  176 (509)
T ss_pred             CCCH-------HHHHHHHHhcCCcceeehhcCcHHHHHHHhCCcccccccccccccccccccccCCCCHHHHHHHHHHHH
Confidence            2221       22222222 23346776655442       1                   01     23344445444 


Q ss_pred             ---HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChH
Q 013050          130 ---NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS  206 (450)
Q Consensus       130 ---~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  206 (450)
                         +.|+.+++.+..+.     |..+.+++.++++.|+++|.++.+|+++...                       ....
T Consensus       177 ~al~~Ga~gis~~~~y~-----p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~-----------------------~~~~  228 (509)
T PRK09061        177 QGLDEGALGIGIGAGYA-----PGTGHKEYLELARLAARAGVPTYTHVRYLSN-----------------------VDPR  228 (509)
T ss_pred             HHHHCCCCEEecCCccC-----CCCCHHHHHHHHHHHHHcCCEEEEEecCccc-----------------------CCch
Confidence               58999998754332     3568899999999999999999999976432                       0122


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC------hhHHHHHHHHHHhCCCcEEEecCcch--------hccccc
Q 013050          207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD------ASSSLDLLMEAKTNGDSITVETCPHY--------LAFSAE  272 (450)
Q Consensus       207 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~------~~~~~~~~~~~~~~g~~v~~~~~~~~--------~~~~~~  272 (450)
                      .+.+.+.++++++++.       +.++|+.|+++      . +.++.++++++.|+.++++.||++        +.++.+
T Consensus       229 ~e~~av~~~i~lA~~~-------G~rv~IsHlss~g~~~~~-~~le~I~~Ar~~Gi~Vt~e~~P~~~~~t~~~~~~l~~~  300 (509)
T PRK09061        229 SSVDAYQELIAAAAET-------GAHMHICHVNSTSLRDID-RCLALVEKAQAQGLDVTTEAYPYGAGSTVVGAAFFDPG  300 (509)
T ss_pred             hHHHHHHHHHHHHHHh-------CCCEEEEeeccCCcccHH-HHHHHHHHHHHcCCcEEEEecCcchhhhhhcccccCHH
Confidence            4567889999999987       99999999998      5 889999999999999999999999        665444


Q ss_pred             ccCCCCCce---EE---cCCCCC-------------------------hhhHHHHHHHHhcCCeeEEcCCCCCCChhhhc
Q 013050          273 EIPDGDTRF---KC---APPIRD-------------------------AANKEKLWEALMDGHIDMLSSDHSPTVPELKL  321 (450)
Q Consensus       273 ~~~~~~~~~---~~---~~~~~~-------------------------~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~  321 (450)
                      ....++..+   .+   .|+++.                         ..+++.+++.+..+.. +++||+.|.....+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~p~~-~i~sD~~p~~~~~~~  379 (509)
T PRK09061        301 WLERMGLGYGSLQWVETGERLLTREELAKLRANDPGGLVLIHFLDEDNPRDRALLDRSVLFPGA-AIASDAMPWTWSDGT  379 (509)
T ss_pred             HHHHhCCCHHHheehhcccccCCHHHHHHHhccCCCCeEEEEeccCCCCccchhHHHHhCCCCc-eEecCCccccccccc
Confidence            333333333   44   777766                         4457778888888776 999999887655542


Q ss_pred             ccCCCccccCCCCcchh------hHHHHHHHHH-Hhc-CCCHHHHHHHHhhchhHHhC-----CCCCCccccCCCccEEE
Q 013050          322 LDEGNFLKAWGGISSLQ------FVLPVTWSYG-RKY-GVTLEQLASWWSERPAKLAG-----QVSKGAIAIGNHADLVV  388 (450)
Q Consensus       322 ~~~~~~~~~~~g~~~~~------~~~~~~~~~~-~~~-gls~~~al~~aT~~~A~~lg-----~~~~G~I~~G~~ADlvv  388 (450)
                         ..|...+.+..+..      ..++..+... ++. .+|++++++++|.+||++||     +++.|+|++|+.|||+|
T Consensus       380 ---~~~~~~~~~~~~~~~h~r~~~~~~~~l~~~v~~~~~isl~~ai~~~T~~pA~~lg~~~~~l~~~G~i~~G~~ADlvv  456 (509)
T PRK09061        380 ---VYEGDAWPLPEDAVSHPRSAGTFARFLREYVRERKALSLLEAIRKCTLMPAQILEDSVPAMRRKGRLQAGADADIVV  456 (509)
T ss_pred             ---cccccccccccCCCCCchhhcchHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccccccccCCEeeCCCCCcCEEE
Confidence               34666666665444      4556665554 443 59999999999999999999     85479999999999999


Q ss_pred             EeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc-CCCCCccccc
Q 013050          389 WEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA-PAACGSPILA  449 (450)
Q Consensus       389 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~-~~~~g~~~~~  449 (450)
                      ||.+......   .  +... +.|+.      .|+.|||||++||++|+++ +...||+|++
T Consensus       457 ~D~~~~~~~~---~--~~~~-~~~~~------gi~~v~v~G~~v~~~g~~~~~~~~G~~lr~  506 (509)
T PRK09061        457 FDPETITDRA---T--FEDP-NRPSE------GVRHVLVNGVPVVSNGELVRDARPGRPVRR  506 (509)
T ss_pred             Echhhccccc---c--cccc-CCCCC------CceEEEECCEEEEECCEecCCCCCCeEecC
Confidence            9987522211   1  1111 23333      3889999999999999986 6789999986

>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics

Probab=100.00  E-value=3.7e-40  Score=318.56  Aligned_cols=346  Identities=24%  Similarity=0.302  Sum_probs=249.9

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      ..++|.|+||+|++|++..+.    .+.++||++|++|+|||||+|+|+..+...     ....+.++.+||||+++++.
T Consensus        18 ~~~~i~I~~g~I~~i~~~~~~----~~~~~iD~~G~~v~PG~iD~H~H~~~~~~~-----~~~~~~a~~~GvTt~~~~~~   88 (415)
T cd01297          18 FTADVGIRDGRIAAIGPILST----SAREVIDAAGLVVAPGFIDVHTHYDGQVFW-----DPDLRPSSRQGVTTVVLGNC   88 (415)
T ss_pred             ccceEEEECCEEEEEecCCCC----CCCeEEECCCCEEccCEeeeeecCCccccc-----CcchhhHHhCcEEEEEeccc
Confidence            357899999999999865431    246899999999999999999999875432     23467789999999999863


Q ss_pred             CCCCCCCcH------------------------HHHHHHHHHHhcC-CceEEE---EeccccC---------CCccchHH
Q 013050           82 NSDPSTIST------------------------ETLKLKVDAAEKR-IYVDVG---FWGGLVP---------ENAYNASA  124 (450)
Q Consensus        82 ~~~~~~~~~------------------------~~~~~~~~~~~~~-~~~~~~---~~~~~~~---------~~~~~~~~  124 (450)
                      +..+.....                        +.+..+.+.+... ..+++.   +++.+..         .+...+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~~~g~~~~~~~~~~~~~  168 (415)
T cd01297          89 GVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLDALEARPPAVNVAALVGHAALRRAVMGLDAREATEEELAK  168 (415)
T ss_pred             cCccCCCChhhhhhhhhhhhcccccccccCCCCCCHHHHHHHHHhcCCCcCeeeccCcHHHHHHHhCcCCCCCCHHHHHH
Confidence            333332222                        3445556666444 478887   6655552         22334555


Q ss_pred             HHHH----HHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcccccccc
Q 013050          125 LEAL----LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL  200 (450)
Q Consensus       125 ~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (450)
                      +.++    .+.|+.+++.+..|...   ...+.+++.++++.|+++|.++.+|+++...                     
T Consensus       169 ~~~l~~~al~~Ga~g~~~~~~y~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~---------------------  224 (415)
T cd01297         169 MRELLREALEAGALGISTGLAYAPR---LYAGTAELVALARVAARYGGVYQTHVRYEGD---------------------  224 (415)
T ss_pred             HHHHHHHHHHCCCeEEEcccccCCc---ccCCHHHHHHHHHHHHHcCCEEEEEECcccc---------------------
Confidence            5555    46799999987644210   1578999999999999999999999976432                     


Q ss_pred             CCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHH---------HHHHHHHHhCCCcEEEecCcchhcccc
Q 013050          201 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS---------LDLLMEAKTNGDSITVETCPHYLAFSA  271 (450)
Q Consensus       201 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~---------~~~~~~~~~~g~~v~~~~~~~~~~~~~  271 (450)
                            .+.+.+.++++++++.       +.++|+.|+++. +.         ++.+++++..|+.++++++|+++.+  
T Consensus       225 ------~e~~av~~~~~~a~~~-------g~r~~i~H~ss~-~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~--  288 (415)
T cd01297         225 ------SILEALDELLRLGRET-------GRPVHISHLKSA-GAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGS--  288 (415)
T ss_pred             ------cHHHHHHHHHHHHHHh-------CCCEEEEEEecC-CCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCc--
Confidence                  3566789999999976       899999999987 66         8999999999999999999975532  


Q ss_pred             cccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHh
Q 013050          272 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRK  350 (450)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~  350 (450)
                                           ...++++++. ..++++||+.|.+.  .      ..... +.      ++.++.. ...
T Consensus       289 ---------------------~~~~~~l~~~-~~~~i~SDh~~~~~--~------~~~~~-~~------~~~~l~~~~~~  331 (415)
T cd01297         289 ---------------------EDDVRRIMAH-PVVMGGSDGGALGK--P------HPRSY-GD------FTRVLGHYVRE  331 (415)
T ss_pred             ---------------------HHHHHHHHcC-CCceeeeCCCcCCC--C------Ccchh-CC------HHHHHHHHhcc
Confidence                                 2223344444 88899999988641  0      00011 11      3344433 333


Q ss_pred             c-CCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECC
Q 013050          351 Y-GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG  429 (450)
Q Consensus       351 ~-gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G  429 (450)
                      . .+|++++++++|.|||+++|+++.|+|++|+.|||||+|.+........          .++  ......|.+|||+|
T Consensus       332 ~~~~~~~~~~~~~t~~pA~~~gl~~~G~l~~G~~ADlvv~d~~~~~~~~~~----------~~~--~~~~~~v~~viv~G  399 (415)
T cd01297         332 RKLLSLEEAVRKMTGLPARVFGLADRGRIAPGYRADIVVFDPDTLADRATF----------TRP--NQPAEGIEAVLVNG  399 (415)
T ss_pred             cCCCCHHHHHHHHHHHHHHHhCCCCCceeCCCCCCCEEEEcccccccccch----------hhh--ccCCCCceEEEECC
Confidence            3 4999999999999999999995469999999999999998754332211          111  11113699999999


Q ss_pred             eEEEecCcccCCCCCc
Q 013050          430 NLVYKEGNHAPAACGS  445 (450)
Q Consensus       430 ~~v~~~g~~~~~~~g~  445 (450)
                      ++||++|++++...||
T Consensus       400 ~~v~~~~~~~~~~~G~  415 (415)
T cd01297         400 VPVVRDGAFTGARPGR  415 (415)
T ss_pred             EEEEECCEECCCCCCC
Confidence            9999999999888785

>PRK15446 phosphonate metabolism protein PhnM; Provisional

Probab=100.00  E-value=1.9e-35  Score=280.94  Aligned_cols=343  Identities=23%  Similarity=0.291  Sum_probs=234.8

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccC----CCC-CCcc---cchHHHHHHHHhCCce
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD----DPG-RTEW---EGFPSGTKAAAAGGIT   74 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~----~~~-~~~~---~~~~~~~~~~~~~GvT   74 (450)
                      .++|.|+||||++|++...     +..++||++|++|||||||+|+|..    .+. ...|   ++|....+.++++|||
T Consensus        19 ~~~i~i~~g~I~~i~~~~~-----~~~~~iDa~g~~v~PG~ID~H~h~~~~~~~p~~~~~~~~~~~~~~~~~~a~~gG~T   93 (383)
T PRK15446         19 DGSLLIEDGRIAAIDPGAS-----ALPGAIDAEGDYLLPGLVDLHTDNLEKHLAPRPGVDWPADAALAAHDAQLAAAGIT   93 (383)
T ss_pred             eeeEEEECCEEEEecCCCC-----CCCceEeCCCCEEEeCeEEcccCCcccccCCCCCCccchHHHHHHHHHHHHhCCcc
Confidence            5799999999999997532     1347899999999999999999543    232 2223   7789999999999999


Q ss_pred             EEEeCCCCC-CC--CCCcH---HHHHHHHH--HHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccC-CC
Q 013050           75 TLIDMPLNS-DP--STIST---ETLKLKVD--AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPS-GI  145 (450)
Q Consensus        75 ~~~~~~~~~-~~--~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~  145 (450)
                      |++++.... .+  .....   ..+.....  .......+++++|+.+...+.+..+++.++.+.|+.++|.|+++. +.
T Consensus        94 t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~h~~~~~~~~~~~~~l~~~~~~g~~~~k~fm~~~p~~  173 (383)
T PRK15446         94 TVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGLLRADHRLHLRCELTNPDALELFEALLAHPRVDLVSLMDHTPGQ  173 (383)
T ss_pred             EeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCchhccceeEEEEEecCcchHHHHHHHhcCCCcCEEEEeCCCCcc
Confidence            999974222 23  11112   13334444  334667799999999888777788899999999999999999775 32


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccC
Q 013050          146 NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTD  225 (450)
Q Consensus       146 ~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~  225 (450)
                      ..+  ...+.+++..  +.+.|   .+|++....+.....                 .|...+.+.++++++.+++.   
T Consensus       174 ~~~--~~~~~~~~~~--~~~~g---~~~~e~~~~~~~~~~-----------------~~~~~~~e~i~~~v~~A~~~---  226 (383)
T PRK15446        174 RQF--RDLEKYREYY--AGKYG---LSDEEFDAFVEERIA-----------------LSARYAPPNRRAIAALARAR---  226 (383)
T ss_pred             ccc--cCHHHHHHHH--HhhcC---CCHHHHHHHHHHHHH-----------------hHhhcCHHHHHHHHHHHHHC---
Confidence            222  2333344444  44667   678877665442222                 14444567899999999987   


Q ss_pred             CCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEc-C-CCCC--hhhHHHHHHHHh
Q 013050          226 GPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCA-P-PIRD--AANKEKLWEALM  301 (450)
Q Consensus       226 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~--~~~~~~l~~~~~  301 (450)
                          |.++ ..|...   ..+.++.+++.|+.++..  +...... ......+...... | +++.  ......++++++
T Consensus       227 ----g~~v-~sH~~~---~~~~i~~a~~~Gv~~~e~--~~~~e~~-~~~~~~g~~v~~~~p~~~r~~~~~~~~~~~~~~~  295 (383)
T PRK15446        227 ----GIPL-ASHDDD---TPEHVAEAHALGVAIAEF--PTTLEAA-RAARALGMSVLMGAPNVVRGGSHSGNVSALDLAA  295 (383)
T ss_pred             ----CCce-eecCCC---CHHHHHHHHHcCCceeeC--CCcHHHH-HHHHHCCCEEEeCCcccccCCcccchHhHHHHHH
Confidence                8888 477742   224577777778766631  1111110 1111122222222 2 2332  344567888999


Q ss_pred             cCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccC
Q 013050          302 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIG  381 (450)
Q Consensus       302 ~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G  381 (450)
                      .|+.++++||+.|...                       +...+......++|++++++++|.|||+++|+++.|+|++|
T Consensus       296 ~Gv~~~lgSD~~p~~~-----------------------~~~~~~~~~~~gls~~~al~~~T~npA~~lgl~~~G~I~~G  352 (383)
T PRK15446        296 AGLLDILSSDYYPASL-----------------------LDAAFRLADDGGLDLPQAVALVTANPARAAGLDDRGEIAPG  352 (383)
T ss_pred             CCCcEEEEcCCChhhH-----------------------HHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCCCCCcCcCCC
Confidence            9999999999865421                       22233445567899999999999999999999445999999


Q ss_pred             CCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050          382 NHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE  435 (450)
Q Consensus       382 ~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~  435 (450)
                      +.|||+|+|.++.        .                ..+..||++|++||+.
T Consensus       353 ~~ADlvv~d~~~~--------~----------------~~v~~v~~~G~~v~~~  382 (383)
T PRK15446        353 KRADLVRVRRAGG--------L----------------PVVRAVWRGGRRVFLA  382 (383)
T ss_pred             CcCCEEEEcCCCC--------C----------------cchheEEECCEEEEeC
Confidence            9999999997620        0                2578899999999875

>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM

Probab=100.00  E-value=6.6e-35  Score=276.30  Aligned_cols=341  Identities=24%  Similarity=0.303  Sum_probs=242.3

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCC------CCCCcc---cchHHHHHHHHhCCc
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD------PGRTEW---EGFPSGTKAAAAGGI   73 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~------~~~~~~---~~~~~~~~~~~~~Gv   73 (450)
                      .++|.|+||+|++|++...     ...++||++|++|||||||+|+|...      ++. .|   +.+.+..+.++++||
T Consensus        15 ~~~i~i~dg~I~~i~~~~~-----~~~~~iD~~G~~v~PGlID~H~h~~e~~~~prp~~-~~~~~~~~~~~~~~~aa~Gi   88 (376)
T TIGR02318        15 EGSVVIEDGAIADIGEGPV-----ALAEAIDGEGDLLLPGLIDLHTDNLERHMSPRPGV-DWPIDAAIVEHDKQLAAAGI   88 (376)
T ss_pred             eeeEEEECCEEEEecCCCC-----CCCceEeCCCCEEeccEEEcccCccccCcCCCCCC-CcchHHHHHHHHHHHhhCCc
Confidence            4689999999999997432     24568999999999999999999876      554 55   678889999999999


Q ss_pred             eEEEeCCCCC--CCCCCcHHHHHHHH---HHHhcC--CceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCC
Q 013050           74 TTLIDMPLNS--DPSTISTETLKLKV---DAAEKR--IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN  146 (450)
Q Consensus        74 T~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  146 (450)
                      ||+++++...  .+.....+.+....   ..+..+  ..+++.+|+.+....++..+++..+.+.|+.+++.|+++.+ .
T Consensus        89 TT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~h~~~e~~~~~~~~~l~~~~~~g~~~~~~~~~~~~-~  167 (376)
T TIGR02318        89 TTVFDALALGDTESGGRRPDNLRRMIDAISEARDRGLLRADHRLHLRCELPNEEVLPELEELIDDPRVDLISLMDHTP-G  167 (376)
T ss_pred             ceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcCchhhhceeEEEEEecCccHHHHHHHHhcCCCcCEEEEeCCCC-C
Confidence            9999997333  45556777777766   555544  77899999988766677788999999999999999998765 3


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050          147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG  226 (450)
Q Consensus       147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~  226 (450)
                      ..+..+.+.+.+.+..  +.|   .+|++....+.......+                . ...+.+.++.+++++.    
T Consensus       168 ~~~~~~~~~~~~~~~~--~~g---~~~~e~~~~~~~~~~~~~----------------~-~~~e~i~~~v~~A~~~----  221 (376)
T TIGR02318       168 QRQFRDLEKYREYYRG--KRG---LSDDEFDEIVEERIARRA----------------E-YGLANRSEIAALARAR----  221 (376)
T ss_pred             cccccCHHHHHHHHHh--hcC---CCHHHHHHHHHHHHHHHh----------------h-ccHHHHHHHHHHHHHC----
Confidence            3345677777766654  555   778877666443332221                0 0146788999999877    


Q ss_pred             CCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCc-eEEcC-CCCChhh--HHHHHHHHhc
Q 013050          227 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR-FKCAP-PIRDAAN--KEKLWEALMD  302 (450)
Q Consensus       227 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~--~~~l~~~~~~  302 (450)
                         +.++ ..|..   ++.+.++++++.|..+...  +-.... .......+.. ..+.| +++....  ...+++++..
T Consensus       222 ---G~~v-~sH~~---~~~e~i~~a~~~Gv~~~E~--~~t~e~-a~~~~~~G~~v~~~~p~~~r~~~~~~~~~l~~~~~~  291 (376)
T TIGR02318       222 ---GIPL-ASHDD---DTPEHVAEAHDLGVTISEF--PTTLEA-AKEARSLGMQILMGAPNIVRGGSHSGNLSARELAHE  291 (376)
T ss_pred             ---CCeE-EEecC---CCHHHHHHHHHCCCChhcc--CCCHHH-HHHHHHcCCeEEECCccccccccccchHHHHHHHHC
Confidence               8887 47774   3344677777777644331  110000 1111222444 33334 3343332  5678899999


Q ss_pred             CCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCccccC
Q 013050          303 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIG  381 (450)
Q Consensus       303 g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G  381 (450)
                      |+.++++||+.|...                       +...+.... ..+++++++++++|.|||+++|++++|+|++|
T Consensus       292 G~~~~l~SD~~p~~~-----------------------l~~~~~~~~~~~gl~~~~al~~~T~npA~~lgl~~~G~I~~G  348 (376)
T TIGR02318       292 GLLDVLASDYVPASL-----------------------LLAAFQLADDVEGIPLPQAVKMVTKNPARAVGLSDRGSIAPG  348 (376)
T ss_pred             CCcEEEEcCCCcHHH-----------------------HHHHHHHHHhhcCCCHHHHHHHHhHHHHHHcCCCCCCcCCCC
Confidence            999999999876421                       222233333 34799999999999999999999667999999


Q ss_pred             CCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEE
Q 013050          382 NHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY  433 (450)
Q Consensus       382 ~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~  433 (450)
                      ++|||+++|...        .    .            ..+..||++|++||
T Consensus       349 ~~ADlvvvd~~~--------~----~------------~~v~~v~~~G~~v~  376 (376)
T TIGR02318       349 KRADLVRVHRVD--------G----V------------PRIRAVWRAGRRVY  376 (376)
T ss_pred             CcccEEEEcCCC--------C----C------------ccceEEEECCEEeC
Confidence            999999999531        0    0            26789999999986

This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.

>PRK06687 chlorohydrolase; Validated

Probab=100.00  E-value=1.8e-34  Score=280.20  Aligned_cols=357  Identities=17%  Similarity=0.179  Sum_probs=205.5

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc---------c--------c-----
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE---------W--------E-----   59 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~---------~--------~-----   59 (450)
                      .+++|+|+||+|++|++..+... ....++||+.|++|+|||||+|+|+.......         |        +     
T Consensus        20 ~~g~VlV~~g~I~aVg~~~~~~~-~~~~~viD~~g~~v~PGlIn~H~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~~   98 (419)
T PRK06687         20 LDGILAVKDSQIVYVGQDKPAFL-EQAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDDSNLHEWLNDYIWPAESEFTP   98 (419)
T ss_pred             cCcEEEEECCEEEEecCcccccc-cccCeEEeCCCCEEccceeeeccCCCccccccccCCCCHHHHHHhhhccccccCCH
Confidence            46899999999999998644321 13468999999999999999999996653210         0        0     


Q ss_pred             -chH----HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEE--eccccCCCccchHHHHHHH---
Q 013050           60 -GFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF--WGGLVPENAYNASALEALL---  129 (450)
Q Consensus        60 -~~~----~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---  129 (450)
                       ...    ....+++.+||||+.++. ...+ . .........+..  .....+..  .........+..+...+++   
T Consensus        99 ~~~~~~~~~a~~e~l~~GvTTv~d~~-~~~~-~-~~~~~~~a~~~~--Gir~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  173 (419)
T PRK06687         99 DMTTNAVKEALTEMLQSGTTTFNDMY-NPNG-V-DIQQIYQVVKTS--KMRCYFSPTLFSSETETTAETISRTRSIIDEI  173 (419)
T ss_pred             HHHHHHHHHHHHHHHhcCcceeehhh-cccc-c-cHHHHHHHHHHh--CCceEeccccccCCcccHHHHHHHHHHHHHHH
Confidence             011    234467999999999985 3221 1 122222222211  11222211  1111111112222333333   


Q ss_pred             -HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChh-hhhhhhhhccCcCCccccccccCCCChHH
Q 013050          130 -NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSW  207 (450)
Q Consensus       130 -~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  207 (450)
                       ..+...++..+++..   ...++++.++++++.|+++|+++.+|+.+.. .....+...+                   
T Consensus       174 ~~~~~~~i~~~~~~~~---~~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g-------------------  231 (419)
T PRK06687        174 LKYKNPNFKVMVAPHS---PYSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIILKRYG-------------------  231 (419)
T ss_pred             hccCCCceEEEEeCCC---CCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHC-------------------
Confidence             223334555554432   2468999999999999999999999995432 1111111110                   


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCC
Q 013050          208 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI  287 (450)
Q Consensus       208 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (450)
                           ....+...+.  +  .-+.++.+.|+...  +.+.++.+++.|+.+..  ||......          .      
T Consensus       232 -----~~~~~~l~~~--g--~l~~~~~~~H~~~~--~~~~~~~la~~g~~v~~--~P~sn~~l----------~------  282 (419)
T PRK06687        232 -----KRPLAFLEEL--G--YLDHPSVFAHGVEL--NEREIERLASSQVAIAH--NPISNLKL----------A------  282 (419)
T ss_pred             -----cCHHHHHHHc--C--CCCCCeEEEEEecC--CHHHHHHHHHcCCeEEE--CcHHhhhh----------c------
Confidence                 0011111111  0  01344555666542  23456666777765554  66532110          0      


Q ss_pred             CChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhH-HHHHHHHHH---hcCCCHHHHHHHHh
Q 013050          288 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYGR---KYGVTLEQLASWWS  363 (450)
Q Consensus       288 ~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~---~~gls~~~al~~aT  363 (450)
                         .....+.++++.|+.+++|||+.+.+....++               ..+ .....+...   ...++++++++|+|
T Consensus       283 ---~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT  344 (419)
T PRK06687        283 ---SGIAPIIQLQKAGVAVGIATDSVASNNNLDMF---------------EEGRTAALLQKMKSGDASQFPIETALKVLT  344 (419)
T ss_pred             ---cCCCcHHHHHHCCCeEEEeCCCCCCCCChhHH---------------HHHHHHHHHhccccCCCccCCHHHHHHHHh
Confidence               01112456788999999999975433222111               111 111111111   12489999999999


Q ss_pred             hchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECCeEEEecCccc
Q 013050          364 ERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKEGNHA  439 (450)
Q Consensus       364 ~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~v~~~g~~~  439 (450)
                      .|||+++|+ +++|+|++||.|||+++|.+......   +     . .+|+...++   ..+|..|||+|++|+++|+++
T Consensus       345 ~~gA~~lg~~~~~G~l~~G~~ADlv~~d~~~~~~~~---p-----~-~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~  415 (419)
T PRK06687        345 IEGAKALGMENQIGSLEVGKQADFLVIQPQGKIHLQ---P-----Q-ENMLSHLVYAVKSSDVDDVYIAGEQVVKQGQVL  415 (419)
T ss_pred             HHHHHHcCCCCCCcccCCCccCCEEEECCCCCCCcC---C-----c-cCHHHHhheeCCCCCccEEEECCEEEEECCeEe
Confidence            999999999 56899999999999999976321111   1     1 223333333   247999999999999999998


Q ss_pred             CCC
Q 013050          440 PAA  442 (450)
Q Consensus       440 ~~~  442 (450)
                      ..+
T Consensus       416 ~~d  418 (419)
T PRK06687        416 TVE  418 (419)
T ss_pred             cCC
Confidence            643

>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional

Probab=100.00  E-value=3.1e-34  Score=278.45  Aligned_cols=364  Identities=13%  Similarity=0.118  Sum_probs=206.2

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC---------ccc--c----------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------EWE--G----------   60 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---------~~~--~----------   60 (450)
                      .+++|+|+||+|++|++..... .+++.++||+.|++|||||||+|+|+....+.         .|-  .          
T Consensus        21 ~~g~V~i~~g~I~~vg~~~~~~-~~~~~~viD~~g~~i~PGlVn~H~H~~~~~~rg~~~~~~l~~wl~~~~~~~~~~~~~   99 (435)
T PRK15493         21 ENGYIIVENDQIIDVNSGEFAS-DFEVDEVIDMKGKWVLPGLVNTHTHVVMSLLRGIGDDMLLQPWLETRIWPLESQFTP   99 (435)
T ss_pred             cCcEEEEECCEEEEEcCccccc-cCCCCeEEeCCCCEEccceeecccCccchhhhccCCCCCHHHHHHhchhhchhcCCH
Confidence            5689999999999999853221 13467899999999999999999999643111         110  0          


Q ss_pred             ------hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecc-ccCCCccchHHHHHHHHc--
Q 013050           61 ------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG-LVPENAYNASALEALLNA--  131 (450)
Q Consensus        61 ------~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--  131 (450)
                            ......+++.+||||+.|+. ....  .....+....+....+..+....+.. .........+....+.+.  
T Consensus       100 e~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~--~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (435)
T PRK15493        100 ELAVASTELGLLEMVKSGTTSFSDMF-NPIG--VDQDAIMETVSRSGMRAAVSRTLFSFGTKEDEKKAIEEAEKYVKRYY  176 (435)
T ss_pred             HHHHHHHHHHHHHHHhCCccEEEccc-cccc--cCHHHHHHHHHHcCCcEEEeeeecCCCCCccHHHHHHHHHHHHHHhc
Confidence                  01124577999999999984 2211  11122222222221111111111110 001111112222223221  


Q ss_pred             C-CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhh-hhhhhhhccCcCCccccccccCCCChHHHH
Q 013050          132 G-VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEE  209 (450)
Q Consensus       132 g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  209 (450)
                      + ...++....+.   ....++++.++++.+.|+++|+++.+|+.+... ........+                     
T Consensus       177 ~~~~~i~~~~~~~---~~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g---------------------  232 (435)
T PRK15493        177 NESGMLTTMVAPH---SPYTCSTELLEECARIAVENQTMVHIHLSETEREVRDIEAQYG---------------------  232 (435)
T ss_pred             CCCCCeEEEEeCC---CCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC---------------------
Confidence            1 12244433332   223578899999999999999999999944322 111111100                     


Q ss_pred             HHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCC
Q 013050          210 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD  289 (450)
Q Consensus       210 ~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (450)
                         ...++.+.+..    .-+.+..+.|+...  +.+.++.+++.|+.+..  ||.....-                   
T Consensus       233 ---~~~~~~l~~~G----ll~~~~~~~H~~~l--~~~d~~~la~~g~~v~~--~P~sn~~l-------------------  282 (435)
T PRK15493        233 ---KRPVEYAASCG----LFKRPTVIAHGVVL--NDNERAFLAEHDVRVAH--NPNSNLKL-------------------  282 (435)
T ss_pred             ---CCHHHHHHHcC----CCCCCcEEEEeecC--CHHHHHHHHHcCCeEEE--ChHHHHHH-------------------
Confidence               00112222210    01344555666542  22345566667765554  77543210                   


Q ss_pred             hhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH---hcCCCHHHHHHHHhhch
Q 013050          290 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLASWWSERP  366 (450)
Q Consensus       290 ~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~gls~~~al~~aT~~~  366 (450)
                      ......+.++++.|+.+++|||+.+.+...+++.              +..+...++...   ...++++++++++|.||
T Consensus       283 ~~g~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~--------------~~~~a~~~~~~~~~~~~~~~~~~~l~~aT~~g  348 (435)
T PRK15493        283 GSGIANVKAMLEAGIKVGIATDSVASNNNLDMFE--------------EMRIATLLQKGIHQDATALPVETALTLATKGA  348 (435)
T ss_pred             hcCcccHHHHHHCCCeEEEccCccccCCCcCHHH--------------HHHHHHHHHhhccCCCCcCCHHHHHHHHhHHH
Confidence            0112235567889999999999754332211110              111222222211   24699999999999999


Q ss_pred             hHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEe---eEEEEEEECCeEEEecCcccCCCC
Q 013050          367 AKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS---GKVLATISRGNLVYKEGNHAPAAC  443 (450)
Q Consensus       367 A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~v~G~~v~~~g~~~~~~~  443 (450)
                      |+++|+++.|+|++||.||||++|.+....+.+.         ..|+...++.   .+|.+|||+||+|++||+++..+.
T Consensus       349 A~~lg~~~~G~l~~G~~ADlvv~d~~~~~~~~p~---------~d~~~~lv~~~~~~~V~~v~V~G~~v~~~g~~~~~d~  419 (435)
T PRK15493        349 AEVIGMKQTGSLEVGKCADFITIDPSNKPHLQPA---------DEVLSHLVYAASGKDISDVIINGKRVVWNGECKTLDE  419 (435)
T ss_pred             HHHcCCCCCCccCCCCcCCEEEEcCCCCCCcCCc---------cChHHhEEEeCCCCCccEEEECCEEEEECCeECCCCH
Confidence            9999995589999999999999996532222111         2333334432   469999999999999999987665


Q ss_pred             Ccc
Q 013050          444 GSP  446 (450)
Q Consensus       444 g~~  446 (450)
                      ...
T Consensus       420 ~~~  422 (435)
T PRK15493        420 ERI  422 (435)
T ss_pred             HHH
Confidence            443

>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed

Probab=100.00  E-value=6e-33  Score=271.97  Aligned_cols=359  Identities=16%  Similarity=0.158  Sum_probs=208.7

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc-----------c-c----------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-----------W-E----------   59 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~-----------~-~----------   59 (450)
                      .+++|+|+||+|++|++..+.+.  ++.++||+.|++|||||||+|+|+.......           | +          
T Consensus        22 ~~~~v~I~~g~I~~Vg~~~~~~~--~~~~vID~~g~~v~PGlVn~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   99 (451)
T PRK08203         22 ADGGLVVEGGRIVEVGPGGALPQ--PADEVFDARGHVVTPGLVNTHHHFYQTLTRALPAAQDAELFPWLTTLYPVWARLT   99 (451)
T ss_pred             eccEEEEECCEEEEEeCCccCCC--CCCeEEeCCCCEEecceEeccccccchhcccccccCCCcHHHHHHHHhHHHHhCC
Confidence            46799999999999999755321  3568999999999999999999997531110           0 0          


Q ss_pred             --c----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecc----------ccCC-----C
Q 013050           60 --G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG----------LVPE-----N  118 (450)
Q Consensus        60 --~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-----~  118 (450)
                        .    ......+++++|||+++++. ...+. .....+....+..... .++......          ....     .
T Consensus       100 ~e~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~~-~~~~~~~~~~~a~~~~-G~R~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (451)
T PRK08203        100 PEMVRVATQTALAELLLSGCTTSSDHH-YLFPN-GLRDALDDQIEAAREI-GMRFHATRGSMSLGESDGGLPPDSVVEDE  176 (451)
T ss_pred             HHHHHHHHHHHHHHHHhcCcCEEEcce-eeccc-cccchHHHHHHHHHHc-CCeEEEecceeecCCccCCCCccccccCH
Confidence              0    11223477899999999985 22221 1111222222222221 222211110          0110     0


Q ss_pred             ccchHHHHHHHHcCC-----cEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChh-hhhhhhhhccCcCC
Q 013050          119 AYNASALEALLNAGV-----LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLD  192 (450)
Q Consensus       119 ~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~  192 (450)
                      .+.++...++++...     ..++..+...   ....++.+.++++++.|+++|+++.+|+.+.. ....+....+    
T Consensus       177 ~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~---~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g----  249 (451)
T PRK08203        177 DAILADSQRLIDRYHDPGPGAMLRIALAPC---SPFSVSRELMRESAALARRLGVRLHTHLAETLDEEAFCLERFG----  249 (451)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCeEEEEEecC---CCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC----
Confidence            112334444444321     2233333222   22357889999999999999999999984322 1111111000    


Q ss_pred             ccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccc
Q 013050          193 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE  272 (450)
Q Consensus       193 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~  272 (450)
                                      ...++.+    .+.  +  ..+.++.+.|+...  +.+.++.+++.|+.++.  ||......  
T Consensus       250 ----------------~~~~~~l----~~~--g--~l~~~~~~~H~~~l--~~~~~~~la~~g~~v~~--~P~~~~~l--  299 (451)
T PRK08203        250 ----------------MRPVDYL----EDL--G--WLGPDVWLAHCVHL--DDAEIARLARTGTGVAH--CPCSNMRL--  299 (451)
T ss_pred             ----------------CCHHHHH----HHc--C--CCCCCeEEEEEeCC--CHHHHHHHHhcCCeEEE--CcHHhhhh--
Confidence                            0001221    111  0  11445666666652  23456777777766554  66432110  


Q ss_pred             ccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH--h
Q 013050          273 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR--K  350 (450)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~  350 (450)
                           +            .....+.++++.|+.+++|||+..++....++              .+..+...+....  .
T Consensus       300 -----~------------~~~~~~~~~~~~Gv~v~lGtD~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~  348 (451)
T PRK08203        300 -----A------------SGIAPVRELRAAGVPVGLGVDGSASNDGSNLI--------------GEARQALLLQRLRYGP  348 (451)
T ss_pred             -----c------------cCCCCHHHHHHCCCeEEEecCCCccCCCcCHH--------------HHHHHHHHHhhcccCC
Confidence                 0            01123467788999999999975432111110              0111111112111  2


Q ss_pred             cCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE--eeEEEEEEEC
Q 013050          351 YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL--SGKVLATISR  428 (450)
Q Consensus       351 ~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~v~  428 (450)
                      ..++++++++++|.|||+++|+++.|+|++||.|||+|+|.+.+...         .. ++|+.+..+  ..+|..||++
T Consensus       349 ~~i~~~~~l~~~T~~~A~~lg~~~~G~l~~G~~ADlvv~d~~~~~~~---------~~-~~p~~~l~~~~~~~v~~v~v~  418 (451)
T PRK08203        349 DAMTAREALEWATLGGARVLGRDDIGSLAPGKLADLALFDLDELRFA---------GA-HDPVAALVLCGPPRADRVMVG  418 (451)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCccCEEEEcCCccccC---------Cc-cChHHHHHccCCCCccEEEEC
Confidence            35999999999999999999996579999999999999998864221         12 445544433  3579999999


Q ss_pred             CeEEEecCcccCCCC
Q 013050          429 GNLVYKEGNHAPAAC  443 (450)
Q Consensus       429 G~~v~~~g~~~~~~~  443 (450)
                      |++||++|++++.+.
T Consensus       419 G~~v~~~~~~~~~d~  433 (451)
T PRK08203        419 GRWVVRDGQLTTLDL  433 (451)
T ss_pred             CEEEEECCcccCCCH
Confidence            999999999987543

>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis

Probab=100.00  E-value=1.6e-32  Score=258.03  Aligned_cols=321  Identities=19%  Similarity=0.212  Sum_probs=242.5

Q ss_pred             EeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC-ceEEEEeccccCC
Q 013050           39 IMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPE  117 (450)
Q Consensus        39 v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  117 (450)
                      -+||+||+|+|+..+     +++.+.++.+.++| |++++++ ++.|.....+.+........... +.++..++.+...
T Consensus         2 ~~Pg~iD~h~h~~~~-----~~~~~~~~aa~~gG-Ttvv~mp-nt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   74 (335)
T cd01294           2 TIPRPDDMHLHLRDG-----AMLKLVLPYTARGF-SRAIVMP-NLKPPVTTTADALAYRERILAADPGPNFTPLMTLYLT   74 (335)
T ss_pred             cCCCcceeEecCCCc-----hHHHHHHHHHHhCC-CEEEECC-CCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEecc
Confidence            379999999999874     66889999999999 9999998 77776666665666555555554 4566665544222


Q ss_pred             CccchHHHHHHHHc-CCcEEEEecccCCCC-CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050          118 NAYNASALEALLNA-GVLGLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS  195 (450)
Q Consensus       118 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~  195 (450)
                      .....+++.++.+. |+.++|.|+...... +....+.+.+.++++.+.+.|++|.+|+++.....              
T Consensus        75 ~~~~~~el~~~~~~~G~~g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~--------------  140 (335)
T cd01294          75 ENTTPEELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKI--------------  140 (335)
T ss_pred             CCCCHHHHHHHHHhCCceEEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCcccc--------------
Confidence            22245788888876 999999986321111 11223567899999999999999999997754310              


Q ss_pred             cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050          196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP  275 (450)
Q Consensus       196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~  275 (450)
                             .+...+.+.+.++..++++      +++.++|+.|+++. ++++.++++++   .+++++||||+.++.+.+.
T Consensus       141 -------~~~~~e~~~~~~~~~lA~~------~p~~~v~i~Hvst~-~~~~~i~~ak~---~vt~Et~ph~L~l~~~~~~  203 (335)
T cd01294         141 -------DVLDREAKFIPVLEPLAQR------FPKLKIVLEHITTA-DAVEYVKSCNE---NVAATITPHHLLLTRDDLL  203 (335)
T ss_pred             -------cchhhHHHHHHHHHHHHHH------cCCCeEEEecccHH-HHHHHHHhCCC---CcEEEEchhHheeeHHHhc
Confidence                   0111234445678888875      35899999999998 99999987765   6999999999999998875


Q ss_pred             C--CCCceEEcCCCCChhhHHHHHHHHhcCCee-EEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcC
Q 013050          276 D--GDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG  352 (450)
Q Consensus       276 ~--~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g  352 (450)
                      .  ++..++++||+|...+++.+|+++.+|... +++|||+|+....+..   .++  ..|+.+.+..++.++.... .+
T Consensus       204 ~~~~g~~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~~---~~g--~~Gi~~~~~~l~~~~~~~~-~~  277 (335)
T cd01294         204 GGGLNPHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKES---SCG--CAGIFSAPIALPYLAEVFE-EH  277 (335)
T ss_pred             CCCCCCCeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCCccccC---CCC--CccccCHHHHHHHHHHHHh-cc
Confidence            5  588899999999999999999999999999 5999999998777642   222  2255666657777765454 48


Q ss_pred             CCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCC
Q 013050          353 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG  415 (450)
Q Consensus       353 ls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~  415 (450)
                      +|+++++++.+.|||++||+ ++.|+        |++++  .+|++..+ .+.+... ++||+|
T Consensus       278 l~l~~~v~~~s~nPA~i~gl~~~kg~--------i~~~~--~~~~v~~~-~~~s~~~-~sp~~g  329 (335)
T cd01294         278 NALDKLEAFASDNGPNFYGLPPNKKT--------ITLVK--EPWKVPEK-IPFGNNG-VVPFRA  329 (335)
T ss_pred             CCHHHHHHHHHhHHHHHhCCCCCCCe--------EEEEe--eceEcCch-hccCCCc-eecccC
Confidence            99999999999999999999 65555        55555  56888877 7788887 889886

In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.

>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases

Probab=100.00  E-value=4.8e-33  Score=271.24  Aligned_cols=351  Identities=17%  Similarity=0.187  Sum_probs=205.2

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC---CCC--------------------cc
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT--------------------EW   58 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~---~~~--------------------~~   58 (450)
                      .+++|+|+||||++|++..+.+. ++..++||++|++|+|||||+|+|+..+   +..                    ..
T Consensus        18 ~~~~v~i~~g~I~~ig~~~~~~~-~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   96 (411)
T cd01298          18 EDGDVLVEDGRIVAVGPALPLPA-YPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADDLPLMEWLKDLIWPLERLLTE   96 (411)
T ss_pred             ecceEEEECCEEEEecCcccccc-CCcCeEEeCCCCEEccCccccccchhhHHhhcccCCCCHHHHHHhhhhhhhhcCCH
Confidence            46799999999999998654321 2467899999999999999999998642   110                    00


Q ss_pred             cchH----HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC-------ccchHHHHH
Q 013050           59 EGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-------AYNASALEA  127 (450)
Q Consensus        59 ~~~~----~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  127 (450)
                      +++.    ....+++++|||++++++ ...+     .......+..    .++...........       ....++..+
T Consensus        97 ~~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~-----~~~~~~~~~~----g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (411)
T cd01298          97 EDVYLGALLALAEMIRSGTTTFADMY-FFYP-----DAVAEAAEEL----GIRAVLGRGIMDLGTEDVEETEEALAEAER  166 (411)
T ss_pred             HHHHHHHHHHHHHHHhcCccEEECcc-ccch-----HHHHHHHHHh----CCeEEEEcceecCCCcccccHHHHHHHHHH
Confidence            1111    234456789999999986 3322     1222222111    12222211111111       112233333


Q ss_pred             HH----HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCh-hhhhhhhhhccCcCCccccccccCC
Q 013050          128 LL----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKT  202 (450)
Q Consensus       128 ~~----~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  202 (450)
                      ++    ..|...++.++....   ....+.+.+.++++.|+++|+++.+|+.+. ...+......+              
T Consensus       167 ~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~--------------  229 (411)
T cd01298         167 LIREWHGAADGRIRVALAPHA---PYTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYG--------------  229 (411)
T ss_pred             HHHHhcCCCCCceEEEEeCCC---CccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhC--------------
Confidence            33    334666777654432   134678999999999999999999998432 22111111100              


Q ss_pred             CChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceE
Q 013050          203 RPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFK  282 (450)
Q Consensus       203 ~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~  282 (450)
                                ...++.+.+.  +  ..+.++.+.|+...  +.+.++.+++.|+.+  ..||......       +    
T Consensus       230 ----------~~~~~~~~~~--~--~~~~~~~i~H~~~l--~~~~~~~l~~~gi~~--~~~p~~~~~~-------~----  280 (411)
T cd01298         230 ----------KRPVEYLEEL--G--LLGPDVVLAHCVWL--TDEEIELLAETGTGV--AHNPASNMKL-------A----  280 (411)
T ss_pred             ----------CCHHHHHHHc--C--CCCCCeEEEEecCC--CHHHHHHHHHcCCeE--EEChHHhhhh-------h----
Confidence                      0011111111  0  11455666777652  234577777777654  4477542110       0    


Q ss_pred             EcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchh-hHHHHHHHHHH---hcCCCHHHH
Q 013050          283 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ-FVLPVTWSYGR---KYGVTLEQL  358 (450)
Q Consensus       283 ~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~---~~gls~~~a  358 (450)
                              .....+.++++.|+.+++|||+.+......               ... ..+...+....   +.++|++++
T Consensus       281 --------~~~~~~~~~~~~Gv~~~~GsD~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~a  337 (411)
T cd01298         281 --------SGIAPVPEMLEAGVNVGLGTDGAASNNNLD---------------MFEEMRLAALLQKLAHGDPTALPAEEA  337 (411)
T ss_pred             --------hCCCCHHHHHHCCCcEEEeCCCCccCCCcC---------------HHHHHHHHHHHhccccCCCCcCCHHHH
Confidence                    011235677889999999999754321110               001 11111111111   136999999


Q ss_pred             HHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcc
Q 013050          359 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH  438 (450)
Q Consensus       359 l~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~  438 (450)
                      ++++|.|||+++|+++.|+|++|+.|||+|+|.+.++..+.+ ++.....    +  .....+|..||++|++||++|++
T Consensus       338 l~~~T~~~A~~lg~~~~G~i~~G~~ADlvv~d~~~~~~~~~~-~~~~~~~----~--~~~~~~v~~v~~~G~~v~~~~~~  410 (411)
T cd01298         338 LEMATIGGAKALGLDEIGSLEVGKKADLILIDLDGPHLLPVH-DPISHLV----Y--SANGGDVDTVIVNGRVVMEDGEL  410 (411)
T ss_pred             HHHHHhhHHHHhCCccCCCcCCCccCCEEEEeCCCCccCCcc-chhhHhe----E--ecCCCCeeEEEECCEEEEECCEe
Confidence            999999999999996589999999999999998865544333 2211110    0  01235899999999999999986


Q ss_pred             c
Q 013050          439 A  439 (450)
Q Consensus       439 ~  439 (450)
                      +
T Consensus       411 ~  411 (411)
T cd01298         411 L  411 (411)
T ss_pred             C
Confidence            4

Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.

>PRK06380 metal-dependent hydrolase; Provisional

Probab=100.00  E-value=9e-33  Score=268.44  Aligned_cols=359  Identities=16%  Similarity=0.168  Sum_probs=204.3

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcc----------------------c
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW----------------------E   59 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~----------------------~   59 (450)
                      .+++|+|+||+|++|++..+     ...++||+.|++|+|||||+|+|+....+...                      +
T Consensus        20 ~~~~v~i~~g~I~~ig~~~~-----~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~rg~~~~~~l~~~~~~~~~~~~~~~~e   94 (418)
T PRK06380         20 LQGNVYIEGNKIVYVGDVNE-----EADYIIDATGKVVMPGLINTHAHVGMTASKGLFDDVDLEEFLMKTFKYDSKRTRE   94 (418)
T ss_pred             eeeeEEEECCEEEEecCCCC-----CCCEEEECCCCEEccCEEeeccCCCccccCCcccCCCHHHHHHHHHhhhhcCCHH
Confidence            45799999999999998532     24579999999999999999999975422210                      0


Q ss_pred             c----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecc-ccCCCccchHHHHHHHHc--C
Q 013050           60 G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG-LVPENAYNASALEALLNA--G  132 (450)
Q Consensus        60 ~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--g  132 (450)
                      +    ......+++++|||+++++. ..      .+.+....+....+..+.+..... .........+....+++.  +
T Consensus        95 ~~~~~~~~~~~e~l~~G~Tt~~d~~-~~------~~~~~~a~~~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (418)
T PRK06380         95 GIYNSAKLGMYEMINSGITAFVDLY-YS------EDIIAKAAEELGIRAFLSWAVLDEEITTQKGDPLNNAENFIREHRN  167 (418)
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEccc-cC------hHHHHHHHHHhCCeEEEecccccCCcccccchHHHHHHHHHHHhcC
Confidence            0    11234477899999999885 11      122222222221111111111110 000001111222222221  1


Q ss_pred             CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChh-hhhhhhhhccCcCCccccccccCCCChHHHHHH
Q 013050          133 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA  211 (450)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  211 (450)
                      ...+...+.+   .+...++.+.+++++++|+++|+++.+|+.+.. .+.......+              .      ..
T Consensus       168 ~~~v~~~~~~---~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g--------------~------~~  224 (418)
T PRK06380        168 EELVTPSIGV---QGIYVANDETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTG--------------E------RP  224 (418)
T ss_pred             CCCeEEEEEC---CCCccCCHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhC--------------C------CH
Confidence            1112222222   223467899999999999999999999995532 1111111100              0      01


Q ss_pred             HHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChh
Q 013050          212 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAA  291 (450)
Q Consensus       212 ~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (450)
                      ++.+..+..        .+.++.+.|+...  +.+.++.+++.|+.+..  ||......       +  .         .
T Consensus       225 ie~~~~~g~--------l~~~~~~~H~~~l--~~~d~~~la~~g~~v~~--~P~sn~~l-------~--~---------~  274 (418)
T PRK06380        225 VEHLEKIGF--------LNSKLIAAHCVWA--TYHEIKLLSKNGVKVSW--NSVSNFKL-------G--T---------G  274 (418)
T ss_pred             HHHHHHCCC--------CCCCeEEEEeecC--CHHHHHHHHHcCCEEEE--CHHHHHhh-------c--c---------C
Confidence            122111111        1345556666653  23456677777765544  66532110       0  0         0


Q ss_pred             hHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH--h-cCCCHHHHHHHHhhchhH
Q 013050          292 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR--K-YGVTLEQLASWWSERPAK  368 (450)
Q Consensus       292 ~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~-~gls~~~al~~aT~~~A~  368 (450)
                      ....+.++++.|+.+++|||....+...+++.              ...+........  . ..++++++++++|.|||+
T Consensus       275 g~~p~~~~~~~Gv~v~lGTD~~~~~~~~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~  340 (418)
T PRK06380        275 GSPPIPEMLDNGINVTIGTDSNGSNNSLDMFE--------------AMKFSALSVKNERWDASIIKAQEILDFATINAAK  340 (418)
T ss_pred             CCCcHHHHHHCCCeEEEcCCCCcCCCCcCHHH--------------HHHHHHHHhhhccCCCCcCCHHHHHHHHHHHHHH
Confidence            11235577889999999999743321111100              000111111111  1 138999999999999999


Q ss_pred             HhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEe---eEEEEEEECCeEEEecCcccCCCCCc
Q 013050          369 LAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS---GKVLATISRGNLVYKEGNHAPAACGS  445 (450)
Q Consensus       369 ~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~v~G~~v~~~g~~~~~~~g~  445 (450)
                      +||+ +.|+|++||+||||++|.+.+...+..       . .+|+...++.   .+|..|||+|++++++|++++.+..+
T Consensus       341 ~lg~-~~G~l~~G~~ADlvv~d~~~~~~~p~~-------~-~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~  411 (418)
T PRK06380        341 ALEL-NAGSIEVGKLADLVILDARAPNMIPTR-------K-NNIVSNIVYSLNPLNVDHVIVNGKILKENGRLNGFNPDE  411 (418)
T ss_pred             HhCC-CCCccCCCccCCEEEEeCCCCccCCCC-------c-cChHHheeecCCCCceeEEEECCEEEEECCeECccCHHH
Confidence            9999 589999999999999998754333210       1 2334333332   47999999999999999999877666


Q ss_pred             ccc
Q 013050          446 PIL  448 (450)
Q Consensus       446 ~~~  448 (450)
                      .+.
T Consensus       412 ~~~  414 (418)
T PRK06380        412 FID  414 (418)
T ss_pred             Hhh
Confidence            553

>PRK09045 N-ethylammeline chlorohydrolase; Provisional

Probab=100.00  E-value=5.9e-33  Score=271.18  Aligned_cols=354  Identities=16%  Similarity=0.142  Sum_probs=203.4

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC---CCc------------c--c----c
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG---RTE------------W--E----G   60 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~---~~~------------~--~----~   60 (450)
                      .+++|+|+||+|++|++....+..+++.++||+.|++|||||||+|+|+....   ...            +  +    +
T Consensus        27 ~~~~v~i~~g~I~~Vg~~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~g~~~~~~~~~w~~~~~~~~~~~~~~  106 (443)
T PRK09045         27 EDHAVAIRDGRIVAILPRAEARARYAAAETVELPDHVLIPGLINAHTHAAMSLLRGLADDLPLMTWLQDHIWPAEGAWVS  106 (443)
T ss_pred             eccEEEEECCEEEEecCcccccccCCcceEEeCCCCEEecCEeccccChhhHhhhhccCCCCHHHHHHhhhhhhhhccCC
Confidence            46789999999999998654332234678999999999999999999986421   100            0  0    0


Q ss_pred             -------hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC----Cc---cchHHHH
Q 013050           61 -------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE----NA---YNASALE  126 (450)
Q Consensus        61 -------~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~  126 (450)
                             ......+++++|||+++++. .      .....   .+... ...++..........    ..   +.++...
T Consensus       107 ~~~~~~~~~~~~~e~l~~G~Ttv~d~~-~------~~~~~---~~~~~-~~G~R~~~~~~~~~~~~~~~~~~~~~l~~~~  175 (443)
T PRK09045        107 EEFVRDGTLLAIAEMLRGGTTCFNDMY-F------FPEAA---AEAAH-QAGMRAQIGMPVLDFPTAWASDADEYLAKGL  175 (443)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcEEEecc-c------cHHHH---HHHHH-HcCCeEEEecccccCCCccccCHHHHHHHHH
Confidence                   11234577899999999874 1      11111   11111 111222221111111    01   1122222


Q ss_pred             HHHH--cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCh-hhhhhhhhhccCcCCccccccccCCC
Q 013050          127 ALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKTR  203 (450)
Q Consensus       127 ~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (450)
                      ++.+  .+...++..+.+..   ...++.+.++++++.|+++|+++.+|+... ..+...+...+              .
T Consensus       176 ~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g--------------~  238 (443)
T PRK09045        176 ELHDQWRHHPLISTAFAPHA---PYTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHG--------------Q  238 (443)
T ss_pred             HHHHHhcCCCcEEEEEeCCC---CCCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhC--------------C
Confidence            2222  23334555443322   235788999999999999999999999532 22111111110              0


Q ss_pred             ChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEE
Q 013050          204 PPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC  283 (450)
Q Consensus       204 p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  283 (450)
                            ..++.+.++.        ..+.++.+.|+...  +.+.++.+++.|+.+..  ||.....              
T Consensus       239 ------~~~~~l~~~g--------~l~~r~~~~H~~~l--~~~~~~~la~~g~~i~~--~P~~~~~--------------  286 (443)
T PRK09045        239 ------RPLARLARLG--------LLGPRLIAVHMTQL--TDAEIALLAETGCSVVH--CPESNLK--------------  286 (443)
T ss_pred             ------CHHHHHHHcC--------CCCCCeEEEEecCC--CHHHHHHHHHcCCeEEE--CHHHHhh--------------
Confidence                  0012222111        11445666677652  23346666666765544  6643210              


Q ss_pred             cCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH---hcCCCHHHHHH
Q 013050          284 APPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLAS  360 (450)
Q Consensus       284 ~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~gls~~~al~  360 (450)
                           .......+.++++.|+.+++|||+.+.+...+++              .+..+...+....   ..+++++++++
T Consensus       287 -----~~~~~~~~~~l~~~Gv~v~lGtD~~~~~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~al~  347 (443)
T PRK09045        287 -----LASGFCPVAKLLQAGVNVALGTDGAASNNDLDLF--------------GEMRTAALLAKAVAGDATALPAHTALR  347 (443)
T ss_pred             -----hccCCCcHHHHHHCCCeEEEecCCCCCCCCccHH--------------HHHHHHHHHHhhccCCCCcCCHHHHHH
Confidence                 0011123456688999999999975432211110              0111111111111   24699999999


Q ss_pred             HHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCce---EeeEEEEEEECCeEEEecC
Q 013050          361 WWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR---LSGKVLATISRGNLVYKEG  436 (450)
Q Consensus       361 ~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~v~v~G~~v~~~g  436 (450)
                      ++|.|||+++|+ ++.|+|++||.|||||+|.+++...+.          .+++...+   ...+|..|||+|++||++|
T Consensus       348 ~~T~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~p~----------~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g  417 (443)
T PRK09045        348 MATLNGARALGLDDEIGSLEPGKQADLVAVDLSGLETQPV----------YDPVSQLVYAAGREQVSHVWVAGKQLLDDR  417 (443)
T ss_pred             HHhHHHHHHcCCCCCCcccCCCCcCCEEEEeCCCCCcCCc----------cChHhHhhEeCCCCCccEEEECCEEEEECC
Confidence            999999999999 678999999999999999886322111          11111111   1257999999999999999


Q ss_pred             cccCCCCC
Q 013050          437 NHAPAACG  444 (450)
Q Consensus       437 ~~~~~~~g  444 (450)
                      ++++.+..
T Consensus       418 ~~~~~d~~  425 (443)
T PRK09045        418 ELTTLDEA  425 (443)
T ss_pred             cCCCCCHH
Confidence            99976543

>PRK07228 N-ethylammeline chlorohydrolase; Provisional

Probab=100.00  E-value=1e-33  Score=277.27  Aligned_cols=356  Identities=16%  Similarity=0.154  Sum_probs=204.0

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc-cc---------------------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-WE---------------------   59 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~-~~---------------------   59 (450)
                      .+++|+|+||+|++|++....+   ...++||+.|++|||||||+|+|+....... .+                     
T Consensus        20 ~~g~V~I~dg~I~~vg~~~~~~---~~~~vID~~G~~vlPGlId~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   96 (445)
T PRK07228         20 VDGDVLIEDDRIAAVGDRLDLE---DYDDHIDATGKVVIPGLIQGHIHLCQTLFRGIADDLELLDWLKDRIWPLEAAHDA   96 (445)
T ss_pred             cccEEEEECCEEEEecCCcccC---cCCeEEeCCCCEEecCEEecccCCccccceeccCCCCHHHHHHhhhhhhhhhCCH
Confidence            5689999999999999764322   2578999999999999999999996532110 00                     


Q ss_pred             -c----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccC------C-----CccchH
Q 013050           60 -G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP------E-----NAYNAS  123 (450)
Q Consensus        60 -~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~~~~  123 (450)
                       .    ......+++.+|+||++++. ....   ....+....   +..  ++.........      .     ..+.++
T Consensus        97 ~~~~~~a~~~~~e~L~~GvTtv~d~~-~~~~---~~~~~~a~~---~~g--~r~~~~~~~~~~~~~~p~~~~~~~~~~l~  167 (445)
T PRK07228         97 ESMYYSALLGIGELIESGTTTIVDME-SVHH---TDSAFEAAG---ESG--IRAVLGKVMMDYGDDVPEGLQEDTEASLA  167 (445)
T ss_pred             HHHHHHHHHHHHHHHhcCceEEEccc-cccC---hHHHHHHHH---HcC--CeEEEecceecCCcCCCccccccHHHHHH
Confidence             0    01123466799999999985 2211   111121111   111  11111100000      0     111223


Q ss_pred             HHHHHHHc--CCc--EEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhh-hhhhhhhccCcCCcccccc
Q 013050          124 ALEALLNA--GVL--GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYST  198 (450)
Q Consensus       124 ~~~~~~~~--g~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~  198 (450)
                      ...++++.  |..  .+...+.+   .....++++.++++++.|+++|+++.+|+.+... +.......+          
T Consensus       168 ~~~~~i~~~~g~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g----------  234 (445)
T PRK07228        168 ESVRLLEKWHGADNGRIRYAFTP---RFAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEEETG----------  234 (445)
T ss_pred             HHHHHHHHhcCCCCCceEEEEeC---CCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC----------
Confidence            33333332  332  22221212   1123577899999999999999999999943222 111111000          


Q ss_pred             ccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCC
Q 013050          199 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD  278 (450)
Q Consensus       199 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~  278 (450)
                                    ...++...+.  +  ..+.++.+.|+...  +.+.++.+++.|+.++.  ||.....         
T Consensus       235 --------------~~~~~~l~~~--g--~~~~~~~l~H~~~~--~~~~~~~~~~~g~~v~~--~P~~~~~---------  283 (445)
T PRK07228        235 --------------MRNIHYLDEV--G--LTGEDLILAHCVWL--DEEEREILAETGTHVTH--CPSSNLK---------  283 (445)
T ss_pred             --------------CCHHHHHHHC--C--CCCCCcEEEEEecC--CHHHHHHHHHcCCeEEE--ChHHhhh---------
Confidence                          0001111111  0  11456777887742  22345556667765553  6653210         


Q ss_pred             CceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH---hcCCCH
Q 013050          279 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTL  355 (450)
Q Consensus       279 ~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~gls~  355 (450)
                                .......++++++.|+.+++|||+.+.+...+++              .+..+...+....   ..++|+
T Consensus       284 ----------~~~~~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~s~  339 (445)
T PRK07228        284 ----------LASGIAPVPDLLERGINVALGADGAPCNNTLDPF--------------TEMRQAALIQKVDRLGPTAMPA  339 (445)
T ss_pred             ----------cccccCcHHHHHHCCCeEEEcCCCCccCCCccHH--------------HHHHHHHHHhhhccCCCcccCH
Confidence                      0112335678899999999999986543211111              0111111111111   135899


Q ss_pred             HHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCc---eEeeEEEEEEECCeE
Q 013050          356 EQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGR---RLSGKVLATISRGNL  431 (450)
Q Consensus       356 ~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~v~v~G~~  431 (450)
                      +++++++|.|||+++|+ ++.|+|++|+.|||+|+|.+.+...+.+       . .+|+...   ....+|..|||+|++
T Consensus       340 ~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~p~~-------~-~~~~~~~~~~~~~~~v~~v~v~G~~  411 (445)
T PRK07228        340 RTVFEMATLGGAKAAGFEDEIGSLEEGKKADLAILDLDGLHATPSH-------G-VDVLSHLVYAAHGSDVETTMVDGKI  411 (445)
T ss_pred             HHHHHHHHHHHHHHhCCCCCccccCCCCccCEEEEcCCCcccCCCc-------c-cCHHHHhheeCCCCCeeEEEECCEE
Confidence            99999999999999999 7789999999999999998864332211       0 1222211   112479999999999


Q ss_pred             EEecCcccCCCCCc
Q 013050          432 VYKEGNHAPAACGS  445 (450)
Q Consensus       432 v~~~g~~~~~~~g~  445 (450)
                      ||++|+++..+.+.
T Consensus       412 v~~~g~~~~~d~~~  425 (445)
T PRK07228        412 VMEDGELTTIDADA  425 (445)
T ss_pred             EEECCeEccCCHHH
Confidence            99999998765443

>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.6e-33  Score=264.62  Aligned_cols=328  Identities=23%  Similarity=0.262  Sum_probs=190.6

Q ss_pred             cceeEEEeCCEEEEeccCC-CCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCccc---------------------
Q 013050            2 CKRAVEIKEGNIISIVSEE-DWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWE---------------------   59 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~-~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~---------------------   59 (450)
                      +++.|+|+||||++|++.. ..+   ++.++||++|++|+|||||+|+|+...+....+                     
T Consensus        27 ~~~~v~i~~GkI~~vg~~~~~~~---~~~~viD~~G~~V~PGLID~HtHl~~~~~~~~~~~~~~~~~~~~~i~~~~~gi~  103 (406)
T COG1228          27 EDGAVLIEDGKIVAVGPEEIDIP---AGAEVIDAKGKTVTPGLIDAHTHLGFGGSRGGEFELREAGASYTEILAAGGGIL  103 (406)
T ss_pred             ecceEEEECCEEEEecCcccCCC---CCCeEEeCCCCEEccceeeccccccccCCccchhhhcccCccHHHHHHhcCChh
Confidence            4588999999999999874 332   468999999999999999999999654322110                     


Q ss_pred             ------------c----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEE-----ec--cccC
Q 013050           60 ------------G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF-----WG--GLVP  116 (450)
Q Consensus        60 ------------~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~  116 (450)
                                  .    .....+.+.++|+|+.-.......+.......+... ........+.+..     ++  ....
T Consensus       104 ~~~~~~~~a~~~g~~~~~~~~l~~~~~~g~~~~e~~~~~g~~~~~e~~~~~~~-~~~~~~~~~~~~~t~~~~~~~~~~~~  182 (406)
T COG1228         104 PLDRGFTTARDGGLKATALPRLKRAGSAGVTTGERKSGYGLDLETEGGHLRAA-AGLKESRPVAVGSTPLAAHGVPEERK  182 (406)
T ss_pred             hhHHHHHHHhhcchHHHHHHHHHHHHHcCCcccceeeeecccccccccccchh-hhccccccccccCccccccCCccccc
Confidence                        0    111233556777777655421111111111111111 1111111111111     11  0111


Q ss_pred             CCc-cchHH----HHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcC
Q 013050          117 ENA-YNASA----LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL  191 (450)
Q Consensus       117 ~~~-~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~  191 (450)
                      ... ...+.    +......|........     ...+..+.++++++++.|++.|+++.+|++..+.            
T Consensus       183 ~~r~~~~~g~~~~i~~~a~~~l~~~~d~~-----~~~~~fs~~e~~~~l~~a~~~g~~v~~HA~~~~g------------  245 (406)
T COG1228         183 ATREAYVAGARLLIKIVATGGLASFVDAF-----CEGGQFSPEEIRAVLAAALKAGIPVKAHAHGADG------------  245 (406)
T ss_pred             chHHHHHHHHHHHHHHHHhccccchhhcc-----ccccccCHHHHHHHHHHHHHCCCceEEEecccch------------
Confidence            111 11111    2222333433333211     2234678899999999999999999999965321            


Q ss_pred             CccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccc
Q 013050          192 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA  271 (450)
Q Consensus       192 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~  271 (450)
                                          +..++++..         ..--|..++.+  ++.+.+.+.. .|.+ .....|...+.  
T Consensus       246 --------------------~~~A~~~g~---------~s~~H~~~ld~--~~~~~~a~~~-~g~~-~~~l~p~~~~~--  290 (406)
T COG1228         246 --------------------IKLAIRLGA---------KSAEHGTLLDH--ETAALLAEKG-AGTP-VPVLLPRTKFE--  290 (406)
T ss_pred             --------------------HHHHHHhCc---------ceehhhhhcCH--hHHHHHhhcc-CCCc-cccccchhhhh--
Confidence                                233333322         11122233332  3333333311 3432 12222211110  


Q ss_pred             cccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhc
Q 013050          272 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY  351 (450)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  351 (450)
                                 .     ..........+.+.|+.++++||+.|...                    ...+...+.++...
T Consensus       291 -----------l-----~e~~~~~~~~l~~~GV~vai~TD~~~~~~--------------------~~~l~~~m~l~~~~  334 (406)
T COG1228         291 -----------L-----RELDYKPARKLIDAGVKVAIGTDHNPGTS--------------------HGSLALEMALAVRL  334 (406)
T ss_pred             -----------h-----hcccchhHHHHHHCCCEEEEEcCCCCCch--------------------hhHHHHHHHHHHHc
Confidence                       0     01122335677889999999999876542                    12345555667777


Q ss_pred             CCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCe
Q 013050          352 GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN  430 (450)
Q Consensus       352 gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~  430 (450)
                      +||++|+|+++|.|||++||+ ++.|+|++||.|||||||.|++.++...    ..            ..+|..||.+|+
T Consensus       335 gmtp~EaL~a~T~naA~alG~~~~~Gsle~Gk~ADlvv~~~dp~~~i~y~----~~------------~~~v~~v~k~G~  398 (406)
T COG1228         335 GMTPEEALKAATINAAKALGLADKVGSLEPGKDADLVVWDGDPLADIPYF----LG------------LNKVEAVIKDGK  398 (406)
T ss_pred             CCCHHHHHHHHHHHHHHHcCCccccccccCCCccCEEEEcCCChhhcccc----cc------------CCceEEEEECCE
Confidence            799999999999999999999 8899999999999999999986554111    11            137999999999


Q ss_pred             EEEecCc
Q 013050          431 LVYKEGN  437 (450)
Q Consensus       431 ~v~~~g~  437 (450)
                      ++++.+.
T Consensus       399 ~~~~~~~  405 (406)
T COG1228         399 VVYERGS  405 (406)
T ss_pred             EeecCCC
Confidence            9998764

>PRK08204 hypothetical protein; Provisional

Probab=100.00  E-value=4.9e-32  Score=265.95  Aligned_cols=351  Identities=18%  Similarity=0.166  Sum_probs=203.8

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC----------ccc------------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT----------EWE------------   59 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~----------~~~------------   59 (450)
                      .+++|+|++|+|++|++..+.    ++.+++|+.|++|+|||||+|+|+......          +..            
T Consensus        22 ~~~~v~V~~g~I~~Vg~~~~~----~~~~viD~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (449)
T PRK08204         22 PRGDILIEGDRIAAVAPSIEA----PDAEVVDARGMIVMPGLVDTHRHTWQSVLRGIGADWTLQTYFREIHGNLGPMFRP   97 (449)
T ss_pred             ccceEEEECCEEEEecCCCCC----CCCeEEeCCCCEEecCEEeeeeccchhhhccccCCCcHHHHHHhhcccccccCCH
Confidence            467999999999999986442    356799999999999999999998532100          000            


Q ss_pred             -----chHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccC-------CCccchHHHHH
Q 013050           60 -----GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-------ENAYNASALEA  127 (450)
Q Consensus        60 -----~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  127 (450)
                           .......+++.+|||+++++. ....   .........+.+.......+...+....       ......+....
T Consensus        98 ~~~~~~a~~~~~~~L~~GvTtv~d~~-~~~~---~~~~~~~~~~~~~~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (449)
T PRK08204         98 EDVYIANLLGALEALDAGVTTLLDWS-HINN---SPEHADAAIRGLAEAGIRAVFAHGSPGPSPYWPFDSVPHPREDIRR  173 (449)
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEeecc-cccC---ChhHHHHHHHHHHHcCCeEEEEccccCCCCCCCcchhhhhHHHHHH
Confidence                 011234578999999999985 2211   1112222222222111111111111100       01112222322


Q ss_pred             HHH---cCCcE-EEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCC
Q 013050          128 LLN---AGVLG-LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTR  203 (450)
Q Consensus       128 ~~~---~g~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (450)
                      +.+   .++.. +......   .+...++++.+.++++.|+++|+++.+|+.+...               .     .. 
T Consensus       174 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~---------------~-----~~-  229 (449)
T PRK08204        174 VKKRYFSSDDGLLTLGLAI---RGPEFSSWEVARADFRLARELGLPISMHQGFGPW---------------G-----AT-  229 (449)
T ss_pred             HHHhhccCCCCceEEEEec---CCcccCCHHHHHHHHHHHHHcCCcEEEEEcCCCc---------------c-----cC-
Confidence            222   22221 1111111   1123467888999999999999999999943211               0     00 


Q ss_pred             ChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEE
Q 013050          204 PPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC  283 (450)
Q Consensus       204 p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  283 (450)
                           ...++.+.+..        ..+.+..+.|+..  -+.+.++.+++.|+.++.  ||......       +     
T Consensus       230 -----~~~~~~l~~~g--------~~~~~~~i~H~~~--~~~~~~~~la~~g~~v~~--~P~~~~~~-------g-----  280 (449)
T PRK08204        230 -----PRGVEQLHDAG--------LLGPDLNLVHGND--LSDDELKLLADSGGSFSV--TPEIEMMM-------G-----  280 (449)
T ss_pred             -----CCHHHHHHHCC--------CCCCCeEEEecCC--CCHHHHHHHHHcCCCEEE--ChHHHhhh-------c-----
Confidence                 01122222211        1155667788876  334567777788876665  66532110       0     


Q ss_pred             cCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH--------------HH
Q 013050          284 APPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY--------------GR  349 (450)
Q Consensus       284 ~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------------~~  349 (450)
                             .....+.++++.|+.+++|||+.+.+....+.               +..+....+.              ..
T Consensus       281 -------~~~~~~~~~~~~Gv~v~lGtD~~~~~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~  338 (449)
T PRK08204        281 -------HGYPVTGRLLAHGVRPSLGVDVVTSTGGDMFT---------------QMRFALQAERARDNAVHLREGGMPPP  338 (449)
T ss_pred             -------CCCCcHHHHHhcCCceeeccccCCCCCcCHHH---------------HHHHHHHHHHhhcccccccccccCCC
Confidence                   00112456688899999999965432111100               0001111110              01


Q ss_pred             hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEE
Q 013050          350 KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLAT  425 (450)
Q Consensus       350 ~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v  425 (450)
                      +.++++.++|+++|.|||+++|+ ++.|+|++||.|||||+|.+.+...+.          ..|+..+++   ..+|..|
T Consensus       339 ~~~~~~~~al~~~T~~gA~~lg~~~~~G~le~Gk~ADlvvld~~~~~~~p~----------~dp~~~lv~~~~~~~v~~v  408 (449)
T PRK08204        339 RLTLTARQVLEWATIEGARALGLEDRIGSLTPGKQADLVLIDATDLNLAPV----------HDPVGAVVQSAHPGNVDSV  408 (449)
T ss_pred             cCCCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEcCCCccccCC----------cChhhhheeccCCCCceEE
Confidence            35799999999999999999999 678999999999999999886422211          223333332   2589999


Q ss_pred             EECCeEEEecCcccCCCCCc
Q 013050          426 ISRGNLVYKEGNHAPAACGS  445 (450)
Q Consensus       426 ~v~G~~v~~~g~~~~~~~g~  445 (450)
                      ||+|++||++|++++.+..+
T Consensus       409 ~v~G~~v~~~~~~~~~d~~~  428 (449)
T PRK08204        409 MVAGRAVKRNGKLLGVDLER  428 (449)
T ss_pred             EECCEEEEECCEeccCCHHH
Confidence            99999999999999765443

>PRK13985 ureB urease subunit beta; Provisional

Probab=100.00  E-value=5.5e-32  Score=257.09  Aligned_cols=331  Identities=22%  Similarity=0.296  Sum_probs=210.2

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCC---------CCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRN---------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG   72 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~---------~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~G   72 (450)
                      .+++|.|+||+|++|++..++..+         ..+.++||++|++|+|||||+|+|+..++.         .+.+++.|
T Consensus        81 ~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH~~~P~~---------~~~AlagG  151 (568)
T PRK13985         81 YKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQ---------IPTAFASG  151 (568)
T ss_pred             EEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCCCCCccH---------HHHHhcCc
Confidence            468999999999999975332110         135789999999999999999999976542         24689999


Q ss_pred             ceEEEeCCC----CCCCCC--CcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCC
Q 013050           73 ITTLIDMPL----NSDPST--ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN  146 (450)
Q Consensus        73 vT~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  146 (450)
                      |||+++++.    ++.+..  .....+....+..+. ..+++.+++..   +....+.+.++.+.|+.+++.+..     
T Consensus       152 VTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~-~pvn~gf~gkG---~~~~l~eL~el~~aGA~GfK~~ed-----  222 (568)
T PRK13985        152 VTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEE-YSMNLGFLGKG---NSSNDASLADQIEAGAIGFKIHED-----  222 (568)
T ss_pred             eEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhc-cCccEEEecCC---ccCCHHHHHHHHHcCCEEEEECCc-----
Confidence            999999531    222222  223334555555443 35778877532   224467888989999999998532     


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050          147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG  226 (450)
Q Consensus       147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~  226 (450)
                        +..++..+.++++.|++++.+|.+|++..+.                             ...++..+....      
T Consensus       223 --~g~t~~~I~~aL~vA~~~dv~V~iHtdtlne-----------------------------~g~~E~t~aa~~------  265 (568)
T PRK13985        223 --WGTTPSAINHALDVADKYDVQVAIHTDTLNE-----------------------------AGCVEDTMAAIA------  265 (568)
T ss_pred             --cCCCHHHHHHHHHHHHHcCCEEEEeCCCCCC-----------------------------chhhHHHHHHhc------
Confidence              2467889999999999999999999976542                             112333333332      


Q ss_pred             CCCCceEEEEecCCh--hHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCCh------hhH-
Q 013050          227 PAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDA------ANK-  293 (450)
Q Consensus       227 ~~~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~-  293 (450)
                         +..+|..|....  ....+.++-+...++..+ +.+| ..-++.+.+..    .-.+.+.+|.+.+-      +-+ 
T Consensus       266 ---gr~iH~~H~egaggghapdi~~~~~~~nvlp~-stnp-t~p~t~nt~~e~~dm~m~~h~l~~~~~ed~afa~srir~  340 (568)
T PRK13985        266 ---GRTMHTFHTEGAGGGHAPDIIKVAGEHNILPA-STNP-TIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRP  340 (568)
T ss_pred             ---CCeEEEEeccCCCccchhhHHHHcCCCCcccC-CCCC-CCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccc
Confidence               888999999753  134455555544332111 1111 22222222211    12233444443111      101 


Q ss_pred             HHH---HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH---HH------------hcCCCH
Q 013050          294 EKL---WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY---GR------------KYGVTL  355 (450)
Q Consensus       294 ~~l---~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~------------~~gls~  355 (450)
                      +-+   .-+.+.|++.+++||+......                   ......+|+.   .+            ...+++
T Consensus       341 ~tiaaed~l~d~G~~s~~~SDs~~mgr~-------------------ge~~~r~~q~a~k~~~~~g~l~~~~~~~dnl~v  401 (568)
T PRK13985        341 QTIAAEDTLHDMGIFSITSSDSQAMGRV-------------------GEVITRTWQTADKNKKEFGRLKEEKGDNDNFRI  401 (568)
T ss_pred             cccccCchhhhCCcEEEEeccchhhCcc-------------------cceeeehHHHHHHHHHhcCCCCCccccccccCH
Confidence            001   1134469999999997532110                   0001111111   11            123778


Q ss_pred             HHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050          356 EQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK  434 (450)
Q Consensus       356 ~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~  434 (450)
                      +++|+++|.|||+++|+ +++|+|++||.|||||||.++..                        .++..||++|+++|.
T Consensus       402 ~eAL~~yTin~A~A~G~e~~vGSLe~GK~ADlVv~d~d~f~------------------------~~pe~vi~~G~iv~~  457 (568)
T PRK13985        402 KRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFFG------------------------VKPNMIIKGGFIALS  457 (568)
T ss_pred             HHHHHHHhHHHHHHcCcccCceeECCCCccCEEEEcCccCC------------------------CChheEEECCEEEEc
Confidence            89999999999999999 78999999999999999966410                        156799999999998


Q ss_pred             c
Q 013050          435 E  435 (450)
Q Consensus       435 ~  435 (450)
                      .
T Consensus       458 ~  458 (568)
T PRK13985        458 Q  458 (568)
T ss_pred             c
Confidence            5

>PRK12394 putative metallo-dependent hydrolase; Provisional

Probab=100.00  E-value=2e-31  Score=254.88  Aligned_cols=331  Identities=21%  Similarity=0.258  Sum_probs=209.3

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN   82 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~   82 (450)
                      .++|+|++|+|++|++....    ...+++|++|++|+|||||+|+|+..++..   ...+....++++|||++++++ .
T Consensus        22 ~~~i~i~~g~I~~i~~~~~~----~~~~viD~~g~~v~PGliD~H~H~~~~g~~---~~~~~~~~~l~~G~Ttv~d~g-~   93 (379)
T PRK12394         22 INNLRIINDIIVDADKYPVA----SETRIIHADGCIVTPGLIDYHAHVFYDGTE---GGVRPDMYMPPNGVTTVVDAG-S   93 (379)
T ss_pred             ccEEEEECCEEEEEcCCCCC----CCCeEEECCCCEEECCEEEeeecCCCCCcc---cccCHHHHHHhCCccEEEECC-C
Confidence            46899999999999874321    245899999999999999999999655422   233345668999999999996 3


Q ss_pred             CCCCCCcHHHHHHHHHHHh---cCCceEEEEeccccCC----Cc-c--chHHHHHHHH---cCCcEEEEecccCCCCCCC
Q 013050           83 SDPSTISTETLKLKVDAAE---KRIYVDVGFWGGLVPE----NA-Y--NASALEALLN---AGVLGLKSFMCPSGINDFP  149 (450)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~-~--~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~  149 (450)
                      ..  ......+........   .+..+.+..++.....    .. .  ..++..++++   .++.+++.+......   .
T Consensus        94 ~~--~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ki~~~~~~~---~  168 (379)
T PRK12394         94 AG--TANFDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQENYDPDNIDENKIHALFRQYRNVLQGLKLRVQTEDI---A  168 (379)
T ss_pred             CC--cccHHHHHHHHhhhhcceeeeEEeeecccccccCcccccChhHCCHHHHHHHHHHCcCcEEEEEEEEecccc---c
Confidence            32  233333333322222   2233344444322211    01 1  1345556654   356677765433210   1


Q ss_pred             CCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCC
Q 013050          150 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE  229 (450)
Q Consensus       150 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  229 (450)
                      ..+.+.+++.++.|+++|+++.+|+.++..                               ...+++.+....       
T Consensus       169 ~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~-------------------------------~~~~~~~~l~~g-------  210 (379)
T PRK12394        169 EYGLKPLTETLRIANDLRCPVAVHSTHPVL-------------------------------PMKELVSLLRRG-------  210 (379)
T ss_pred             ccchHHHHHHHHHHHHcCCCEEEEeCCCCc-------------------------------cHHHHHHhcCCC-------
Confidence            456889999999999999999999965431                               012233333211       


Q ss_pred             CceEEEEecC-------ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhc
Q 013050          230 GAHLHIVHLS-------DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD  302 (450)
Q Consensus       230 ~~~~~~~h~~-------~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  302 (450)
                      ....|+.+..       +. ...+.++++++.|..+.. .++                       +...+...+++++..
T Consensus       211 ~~~~H~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~-~~g-----------------------~s~~~~~~~~~~l~~  265 (379)
T PRK12394        211 DIIAHAFHGKGSTILTEEG-AVLAEVRQARERGVIFDA-ANG-----------------------RSHFDMNVARRAIAN  265 (379)
T ss_pred             CEEEecCCCCCCCcCCCCC-CChHHHHHHHhCCeEEEe-cCC-----------------------ccccchHHHHHHHHC
Confidence            2233333311       11 335677777777742211 111                       111234556788899


Q ss_pred             CC-eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCcccc
Q 013050          303 GH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAI  380 (450)
Q Consensus       303 g~-~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~  380 (450)
                      |+ .++++||+.+.+.....                ...+..+++.....+++++++++|+|.|||+++|+ ++.|+|++
T Consensus       266 G~~~~~lgTD~~~~~~~~~~----------------~~~l~~~~~~~~~~~~~~~~~~~~at~~~a~~~g~~~~~G~i~~  329 (379)
T PRK12394        266 GFLPDIISSDLSTITKLAWP----------------VYSLPWVLSKYLALGMALEDVINACTHTPAVLMGMAAEIGTLAP  329 (379)
T ss_pred             CCCceEEECCCCCCCcccCc----------------cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCCccCC
Confidence            95 88999999876522110                01234455555578999999999999999999999 47899999


Q ss_pred             CCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEee----EEEEEEECCeEEEecCc
Q 013050          381 GNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG----KVLATISRGNLVYKEGN  437 (450)
Q Consensus       381 G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~v~v~G~~v~~~g~  437 (450)
                      |+.|||+++|.+.++... . +          +.+....+    +|..|||+|++||++-.
T Consensus       330 G~~ADl~~~~~~~~~~~~-~-d----------~~g~~~~~~~~~~v~~t~v~G~~v~~~~~  378 (379)
T PRK12394        330 GAFADIAIFKLKNRHVEF-A-D----------IHGETLTGTHVLVPQMTIKSGEILYRQID  378 (379)
T ss_pred             CCccCEEEEecCcCccee-c-c----------CCCCEEEeeeecceEEEEECCEEEEecCC
Confidence            999999999988754421 1 1          23333333    79999999999998654

>PRK07203 putative chlorohydrolase/aminohydrolase; Validated

Probab=100.00  E-value=5.9e-32  Score=264.05  Aligned_cols=357  Identities=15%  Similarity=0.079  Sum_probs=200.3

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc-------ccc---------------
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-------WEG---------------   60 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~-------~~~---------------   60 (450)
                      +++|.|+||+|++|++..+....++..+++|+.|++|+|||||+|+|+....+..       ...               
T Consensus        21 ~~~v~I~~g~I~~Vg~~~~~~~~~~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~~~~~~~l~~~l~~~~~~~~~~  100 (442)
T PRK07203         21 DGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMANIPPPPDFISILKNLWWRLDRA  100 (442)
T ss_pred             ccEEEEECCEEEEEeCchhhccccCCCeEEeCCCCEEecceeeccccchhhhhcccccccCCCCCHHHHHHhheehhhhc
Confidence            5789999999999997433221124568999999999999999999986321100       000               


Q ss_pred             -----h----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC-cc----chHHHH
Q 013050           61 -----F----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AY----NASALE  126 (450)
Q Consensus        61 -----~----~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~  126 (450)
                           +    .....+++++|||+++++...........+   ...+... ...++........+.+ ..    .++...
T Consensus       101 ~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~---~~~~a~~-~~GiR~~~~~~~~d~~~~~~~~~~l~~~~  176 (442)
T PRK07203        101 LTLEDVYYSALICSLEAIKNGVTTVFDHHASPNYIGGSLF---TIADAAK-KVGLRAMLCYETSDRDGEKELQEGVEENI  176 (442)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCceEEEccccccccccchHH---HHHHHHH-HhCCeEEEecccccCCcchhHHHHHHHHH
Confidence                 0    112347799999999998411111111111   2222222 2222222211111111 11    111222


Q ss_pred             HHHHc--C--CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhh-hhhhhhhccCcCCccccccccC
Q 013050          127 ALLNA--G--VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLK  201 (450)
Q Consensus       127 ~~~~~--g--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  201 (450)
                      ++++.  +  ...+...+.+   .....++++.++++.+.|+++|+++.+|..+... ...+....+             
T Consensus       177 ~~~~~~~~~~~~~v~~~~~p---~~~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g-------------  240 (442)
T PRK07203        177 RFIKHIDEAKDDMVEAMFGL---HASFTLSDATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYG-------------  240 (442)
T ss_pred             HHHHHhcCCCCCceEEEEcc---CCCcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcC-------------
Confidence            22221  1  1123333333   2224578899999999999999999999954332 222221111             


Q ss_pred             CCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCce
Q 013050          202 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF  281 (450)
Q Consensus       202 ~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~  281 (450)
                                 ...++...+...  .  +.++.+.|+...  +.+.++.+++.|..+..  ||......           
T Consensus       241 -----------~~~v~~l~~~Gl--l--~~~~~~~H~~~~--~~~d~~~la~~g~~v~~--~P~sn~~l-----------  290 (442)
T PRK07203        241 -----------KDIVERLADFGL--L--GEKTLAAHCIYL--SDEEIDLLKETDTFVVH--NPESNMGN-----------  290 (442)
T ss_pred             -----------CCHHHHHHhCCC--C--CCCcEEEEeecC--CHHHHHHHHhcCCeEEE--Cchhhhhc-----------
Confidence                       001122222100  1  344555665542  22345666666765554  77532111           


Q ss_pred             EEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH--hcCCCHHHHH
Q 013050          282 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR--KYGVTLEQLA  359 (450)
Q Consensus       282 ~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~gls~~~al  359 (450)
                              ......+.++++.|+.+++|||+...+....                  ..+....+...  ...+++++++
T Consensus       291 --------~~g~~p~~~~~~~Gv~v~lGtD~~~~d~~~~------------------~~~a~~~~~~~~~~~~~~~~~~~  344 (442)
T PRK07203        291 --------AVGYNPVLEMIKNGILLGLGTDGYTSDMFES------------------YKVANFKHKHAGGDPNVGWPESP  344 (442)
T ss_pred             --------ccCCCCHHHHHHCCCeEEEcCCCCCccHHHH------------------HHHHHHHhccccCCCCCCHHHHH
Confidence                    0112234677889999999999753322211                  11111112111  1224578999


Q ss_pred             HHHhhchhHHhC--C-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECCeEEE
Q 013050          360 SWWSERPAKLAG--Q-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVY  433 (450)
Q Consensus       360 ~~aT~~~A~~lg--~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~v~  433 (450)
                      +|+|.|||+++|  + ++.|+|++||.|||+++|.+.+...+.          .+|+...++   ..+|..|||+|++||
T Consensus       345 ~~aT~~gA~~lg~~~~~~~G~l~~G~~ADlvv~d~~~~~~~~~----------~~~~~~~v~~~~~~~v~~v~v~G~~v~  414 (442)
T PRK07203        345 AMLFENNNKIAERYFGAKFGILEEGAKADLIIVDYNPPTPLNE----------DNINGHILFGMNGGSVDTTIVNGKVVM  414 (442)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCccCEEEEcCCCCeecCc----------cccccceEeecCCCceEEEEECCEEEE
Confidence            999999999999  4 568999999999999999876433321          122222222   357999999999999


Q ss_pred             ecCcccCCCCCc
Q 013050          434 KEGNHAPAACGS  445 (450)
Q Consensus       434 ~~g~~~~~~~g~  445 (450)
                      ++|++++.+..+
T Consensus       415 ~~g~~~~~d~~~  426 (442)
T PRK07203        415 EDRKFLNFDEES  426 (442)
T ss_pred             ECCcccccCHHH
Confidence            999998766443

>PRK06151 N-ethylammeline chlorohydrolase; Provisional

Probab=100.00  E-value=2.8e-32  Score=268.73  Aligned_cols=358  Identities=17%  Similarity=0.131  Sum_probs=201.7

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC-------CCC------ccc---------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP-------GRT------EWE---------   59 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~-------~~~------~~~---------   59 (450)
                      .+++|+|+||+|++|++....    +..++||+.|++|||||||+|+|+...       ...      .|.         
T Consensus        22 ~~~~VlVe~g~I~~Vg~~~~~----~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (488)
T PRK06151         22 RDGEVVFEGDRILFVGHRFDG----EVDRVIDAGNALVGPGFIDLDALSDLDTTILGLDNGPGWAKGRVWSRDYVEAGRR   97 (488)
T ss_pred             eCcEEEEECCEEEEecCCCCC----CCCeEEeCCCCEEecCEEeeecccchhhhhcccccchhHHhcccCchhhhhcchh
Confidence            467899999999999985321    245799999999999999999996420       000      010         


Q ss_pred             ------c----hHHHHHHHHhCCceEEEeCCCCCCCC-CCcHHHHHHHHHHHhcCCceEEEEecccc------C------
Q 013050           60 ------G----FPSGTKAAAAGGITTLIDMPLNSDPS-TISTETLKLKVDAAEKRIYVDVGFWGGLV------P------  116 (450)
Q Consensus        60 ------~----~~~~~~~~~~~GvT~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------  116 (450)
                            .    ......+++++|||+++++....... ..+...+....+..... .++........      .      
T Consensus        98 ~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~a~~~~-GiR~~~~~~~~~~~~~~~~~g~~~  176 (488)
T PRK06151         98 EMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYRQWAETYAEFAAAAEAAGRL-GLRVYLGPAYRSGGSVLEADGSLE  176 (488)
T ss_pred             hcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhccccccccchHHHHHHHHHHc-CCeEEecchhccCccccccCCCCC
Confidence                  0    01234588999999999874111110 11111222222222211 11111110000      0      


Q ss_pred             ---C---Ccc----chHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChh-hhhhhhh
Q 013050          117 ---E---NAY----NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVK  185 (450)
Q Consensus       117 ---~---~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~  185 (450)
                         .   ..+    ..+.++++...|...++....+.   ....++.+.+.++++.|+++|+++.+|+.+.. .+.....
T Consensus       177 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p~---~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~  253 (488)
T PRK06151        177 VVFDEARGLAGLEEAIAFIKRVDGAHNGLVRGMLAPD---RIETCTVDLLRRTAAAARELGCPVRLHCAQGVLEVETVRR  253 (488)
T ss_pred             ccccchhHHHHHHHHHHHHHHhhcccCCceEEEEcCC---CCCCCCHHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHH
Confidence               0   001    11222333334555555544332   22357899999999999999999999994322 1111110


Q ss_pred             hccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhH-------HHHHHHHHHhCCCcE
Q 013050          186 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS-------SLDLLMEAKTNGDSI  258 (450)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~-------~~~~~~~~~~~g~~v  258 (450)
                      ..+                        ...++...+.  +  ..+.++.+.|+....+       ..+.++.+++.|+.+
T Consensus       254 ~~g------------------------~~~~~~~~~~--g--~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la~~g~~v  305 (488)
T PRK06151        254 LHG------------------------TTPLEWLADV--G--LLGPRLLIPHATYISGSPRLNYSGGDDLALLAEHGVSI  305 (488)
T ss_pred             HcC------------------------CCHHHHHHHc--C--CCCCCcEEEEEEEcCCccccccCCHHHHHHHHhcCCEE
Confidence            000                        0011222221  0  0133445555543201       126777888888755


Q ss_pred             EEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchh
Q 013050          259 TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ  338 (450)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~  338 (450)
                      ..  ||.....       .+            .....+.++++.|+.+++|||..+.+....+                 
T Consensus       306 ~~--~P~~~~~-------~g------------~~~~p~~~l~~~Gv~v~lGtD~~~~~~~~~~-----------------  347 (488)
T PRK06151        306 VH--CPLVSAR-------HG------------SALNSFDRYREAGINLALGTDTFPPDMVMNM-----------------  347 (488)
T ss_pred             EE--Cchhhhh-------hc------------cccccHHHHHHCCCcEEEECCCCCccHHHHH-----------------
Confidence            54  6532110       00            1122356678899999999997543222111                 


Q ss_pred             hHHHHHHHHHHh---cCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCC
Q 013050          339 FVLPVTWSYGRK---YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG  415 (450)
Q Consensus       339 ~~~~~~~~~~~~---~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~  415 (450)
                       ...........   ..++++++++++|.|||+++|+++.|+|++|+.|||+|+|.+.....+ .         ++|+..
T Consensus       348 -~~~~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvvld~~~~~~~~-~---------~d~~~~  416 (488)
T PRK06151        348 -RVGLILGRVVEGDLDAASAADLFDAATLGGARALGRDDLGRLAPGAKADIVVFDLDGLHMGP-V---------FDPIRT  416 (488)
T ss_pred             -HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhCCCCCcccCCCCcCCEEEEeCCccccCC-c---------cCHHHH
Confidence             01111111221   248999999999999999999944899999999999999977532111 1         223332


Q ss_pred             ceEe---eEEEEEEECCeEEEecCcccCCCCC
Q 013050          416 RRLS---GKVLATISRGNLVYKEGNHAPAACG  444 (450)
Q Consensus       416 ~~~~---~~v~~v~v~G~~v~~~g~~~~~~~g  444 (450)
                      .++.   .+|..|||+|++||++|+++..+..
T Consensus       417 lv~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~  448 (488)
T PRK06151        417 LVTGGSGRDVRAVFVDGRVVMEDGRLPGVDLA  448 (488)
T ss_pred             HHhhCCCCCccEEEECCEEEEECCeecCCCHH
Confidence            2221   3799999999999999999866543

>PRK09228 guanine deaminase; Provisional

Probab=100.00  E-value=1e-31  Score=260.50  Aligned_cols=358  Identities=18%  Similarity=0.148  Sum_probs=197.9

Q ss_pred             CcceeEEEeCCEEEEeccCCCCCCCCC-CCcEEecCCCEEeccceeeccccCCCCCCc--------c--------c----
Q 013050            1 MCKRAVEIKEGNIISIVSEEDWPRNSK-TGQVVDYGEAVIMPGLIDVHAHLDDPGRTE--------W--------E----   59 (450)
Q Consensus         1 ~~~~~V~I~~g~I~~Ig~~~~~~~~~~-~~~viD~~g~~v~PG~iD~H~H~~~~~~~~--------~--------~----   59 (450)
                      +.+++|+|+||+|++|++..+.....+ +.++||+.|++|+|||||+|+|+.......        |        +    
T Consensus        29 ~~~g~I~I~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~lv~PGlVn~H~H~~~~~~~g~~~~~l~~wl~~~~~~~e~~~~  108 (433)
T PRK09228         29 IEDGLLLVEDGRIVAAGPYAELRAQLPADAEVTDYRGKLILPGFIDTHIHYPQTDMIASYGEQLLDWLNTYTFPEERRFA  108 (433)
T ss_pred             ECCeEEEEECCEEEEEcChHHhhhhcCCCCeEEeCCCCEEecceecccccccchhhccCCchHHHHHHHhhhhHHHHHhC
Confidence            357899999999999998644321122 368999999999999999999986432110        0        0    


Q ss_pred             ---chH----HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc----C-C----CccchH
Q 013050           60 ---GFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV----P-E----NAYNAS  123 (450)
Q Consensus        60 ---~~~----~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~----~~~~~~  123 (450)
                         ...    ....+++.+|||+++++. ...     ........+.... ..++........    . .    .....+
T Consensus       109 ~~~~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~-----~~~~~~~~~a~~~-~GiR~~~~~~~~~~~~~~~~~~~~~~~l~  181 (433)
T PRK09228        109 DPAYAREVAEFFLDELLRNGTTTALVFG-TVH-----PQSVDALFEAAEA-RNMRMIAGKVLMDRNAPDGLRDTAESGYD  181 (433)
T ss_pred             CHHHHHHHHHHHHHHHHhCCceEEEecc-ccC-----HHHHHHHHHHHHH-cCCeEEeeeeeecCCCCcccccCHHHHHH
Confidence               001    113467999999999985 221     1122222222221 222222111111    0 0    011122


Q ss_pred             HHHHHHHc--CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEecCChh-hhhhhhhhccCcCCccccccc
Q 013050          124 ALEALLNA--GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTY  199 (450)
Q Consensus       124 ~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~  199 (450)
                      ...++++.  +...+...+.+   ...+.++++.++++.+.|+++ ++++.+|..+.. .........+           
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~p---~~~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g-----------  247 (433)
T PRK09228        182 DSKALIERWHGKGRLLYAITP---RFAPTSTPEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFP-----------  247 (433)
T ss_pred             HHHHHHHHHhCCCCceEEEEC---CcCCcCCHHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcC-----------
Confidence            22222221  11122222222   112367889999999999998 999999995432 2111111110           


Q ss_pred             cCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCC
Q 013050          200 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT  279 (450)
Q Consensus       200 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~  279 (450)
                        ..+         ...+..++..    .-+.++.+.|+...  +.+.++.+++.|+.+..  ||.....-       + 
T Consensus       248 --~~~---------~~~~~l~~~G----~l~~~~~~~H~~~l--~~~~~~~la~~g~~v~~--~P~sn~~l-------g-  300 (433)
T PRK09228        248 --EAR---------DYLDVYERYG----LLGPRAVFAHCIHL--EDRERRRLAETGAAIAF--CPTSNLFL-------G-  300 (433)
T ss_pred             --CCC---------CHHHHHHHcC----CCCCCeEEEeccCC--CHHHHHHHHHcCCeEEE--CCccHHhh-------c-
Confidence              000         0122222210    01446777787763  33456667777765544  66532110       0 


Q ss_pred             ceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhh-HHHHHHHHHHhcCCCHHHH
Q 013050          280 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF-VLPVTWSYGRKYGVTLEQL  358 (450)
Q Consensus       280 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~gls~~~a  358 (450)
                                 .....+.++++.|+.+++|||....+. .++               ... .+..........+++++++
T Consensus       301 -----------~g~~~~~~~~~~Gv~v~lGtD~~~~~~-~d~---------------~~~~~~~~~~~~~~~~~~~~~~~  353 (433)
T PRK09228        301 -----------SGLFDLKRADAAGVRVGLGTDVGGGTS-FSM---------------LQTMNEAYKVQQLQGYRLSPFQA  353 (433)
T ss_pred             -----------CCCcCHHHHHHCCCeEEEecCCCCCCC-CCH---------------HHHHHHHHHHhhcccCCCCHHHH
Confidence                       011234567888999999999643211 111               111 1111122223456899999


Q ss_pred             HHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECCeEEEe
Q 013050          359 ASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYK  434 (450)
Q Consensus       359 l~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~v~~  434 (450)
                      |+|+|.|||+++|+ +++|+|++||+||||++|.+..+....... ..... ..|+...++   ..+|+.|||+|++|++
T Consensus       354 l~~aT~~~A~~lg~~~~~G~l~~Gk~ADlvv~d~~~~~~~~~~~~-~~~~~-~d~~~~lv~~~~~~~V~~v~VdG~~v~~  431 (433)
T PRK09228        354 FYLATLGGARALGLDDRIGNLAPGKEADFVVLDPAATPLLALRTA-RAESL-EELLFALMTLGDDRAVAETYVAGRPVYR  431 (433)
T ss_pred             HHHHhHHHHHHhCCCCCCcccCCCCCCCEEEEcCCCCccccchhc-ccCCH-HHHHHHHhhcCCccceeEEEECCEEecc
Confidence            99999999999999 568999999999999999875332110000 00000 123322332   3579999999999987


Q ss_pred             c
Q 013050          435 E  435 (450)
Q Consensus       435 ~  435 (450)
                      +
T Consensus       432 ~  432 (433)
T PRK09228        432 R  432 (433)
T ss_pred             C
Confidence            5

>PRK13308 ureC urease subunit alpha; Reviewed

Probab=100.00  E-value=5.3e-31  Score=251.53  Aligned_cols=330  Identities=22%  Similarity=0.250  Sum_probs=214.6

Q ss_pred             cceeEEEeCCEEEEeccCCCCCC---------CCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPR---------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG   72 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~---------~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~G   72 (450)
                      ++++|.|+||||++|++..++..         ..++.++||++|++|+|||||+|+|+..++.         .+.++..|
T Consensus        85 ~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~~~Pg~---------~~aALagG  155 (569)
T PRK13308         85 VKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHFDSAQL---------VDHALASG  155 (569)
T ss_pred             EEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCCCCccH---------HHHHHcCC
Confidence            46899999999999997542210         0135689999999999999999999976542         37889999


Q ss_pred             ceEEEeCCCCC--CCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCC
Q 013050           73 ITTLIDMPLNS--DPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPM  150 (450)
Q Consensus        73 vT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  150 (450)
                      |||+++++...  .+.......+..+.+..+. .++++++++...   ....+.+.++++.|+.++|.+..+       .
T Consensus       156 VTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~-~pvN~g~~gkG~---~s~~aeL~eli~aGA~GfKi~ed~-------g  224 (569)
T PRK13308        156 ITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEA-WPVNFGFLGRGN---SSKPAALIEQVEAGACGLKIHEDW-------G  224 (569)
T ss_pred             CcEEecCCcCCCCCCCCCCHHHHHHHHHHHhc-CCccEEEEcCCc---ccCHHHHHHHHHCCCCEEeecCCC-------C
Confidence            99999864111  1235666777777666654 468888876432   234678889999999999986433       3


Q ss_pred             CCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC
Q 013050          151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG  230 (450)
Q Consensus       151 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~  230 (450)
                      .+.+.+.++++.|++++++|.+|++..+.                             ...++..++...         |
T Consensus       225 ~t~~~i~~aL~~A~~~dv~VaiHadtlne-----------------------------~g~~E~t~~a~~---------g  266 (569)
T PRK13308        225 AMPAAIDTCLEVADEYDFQVQLHTDTLNE-----------------------------SGFVEDTLAAIG---------G  266 (569)
T ss_pred             CCHHHHHHHHHHHHhcCCEEEEeCCCcCc-----------------------------chHHHHHHHHhc---------C
Confidence            57789999999999999999999976432                             122344333333         8


Q ss_pred             ceEEEEecCCh--hHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCCh------hhH-HHH-
Q 013050          231 AHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDA------ANK-EKL-  296 (450)
Q Consensus       231 ~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~-~~l-  296 (450)
                      ..+|+.|....  -...+.++.+...++..+ +.+| ..-++.+.+..    .-.+.+.+|.+.+-      +-+ +-+ 
T Consensus       267 r~iH~~H~egaggghapd~l~~~~~~n~lp~-stnp-t~p~t~nt~~e~~dm~m~~h~l~~~~~~d~afa~srir~~ti~  344 (569)
T PRK13308        267 RTIHMYHTEGAGGGHAPDIIRVVGEPHCLPS-STNP-TNPYTVNTFDEHLDMTMVCHHLNPDVPEDVAFAESRIRAQTIA  344 (569)
T ss_pred             CeEEEEeccCCccCchhHHHHHhCCCCccCC-CCCC-CCCCccCchhhhcCeEEEecCCCCCCcchhhhhhhhccceeec
Confidence            88999999753  133455555544332111 1111 12222222211    12233444443211      000 000 


Q ss_pred             --HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh-----cCCCHHH-----------H
Q 013050          297 --WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-----YGVTLEQ-----------L  358 (450)
Q Consensus       297 --~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~gls~~~-----------a  358 (450)
                        .-+.+.|+..+++||+...                   ..+-......|+.+.+     ..|+.++           .
T Consensus       345 ae~~l~d~g~~s~~~sds~~m-------------------gr~~e~i~r~~q~a~~~~~~~g~l~~~~~~~~dn~rv~r~  405 (569)
T PRK13308        345 AEDVLHDIGAISMLGSDSQGM-------------------GRIAEVIARTWQLASKMKDQRGPLPEDRGTFADNARIKRY  405 (569)
T ss_pred             cCchhhcCCcEEEEecchHHH-------------------hHHHHHHHHHHHHHHHHhhcCCCCCcccccCCchhhhhHH
Confidence              1134468999999997532                   1222223334443321     2366554           7


Q ss_pred             HHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050          359 ASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK  434 (450)
Q Consensus       359 l~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~  434 (450)
                      ++++|.|||+++|+ +.+|+|++||.||||+|+.+..          .              .++..||++|+++|.
T Consensus       406 L~~~T~npA~alGi~~~vGsLe~Gk~ADLVv~d~d~f----------g--------------v~p~~ti~~G~iv~~  458 (569)
T PRK13308        406 IAKYTINPAITFGIDDHIGSLEPGKLADIVLWRPAFF----------G--------------IKPELVIKGGFPAWA  458 (569)
T ss_pred             HHHHhHHHHHHcCCCCCceeeCCCCcCCEEEECCccc----------C--------------CCeeEEEECCEEEEe
Confidence            99999999999999 6799999999999999995520          0              156789999999986

>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA

Probab=100.00  E-value=1.9e-31  Score=259.45  Aligned_cols=364  Identities=16%  Similarity=0.109  Sum_probs=203.2

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC----------cc-------------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT----------EW-------------   58 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~----------~~-------------   58 (450)
                      .+++|.|++|+|++|++..+.....++.+++|+.|++|+|||||+|+|+......          .+             
T Consensus        19 ~~~~v~i~~g~I~~vg~~~~~~~~~~~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d~~~~~~~~~~l~~~~~~~~~   98 (441)
T TIGR03314        19 EGGDIAIDGDVIKAVGPTEELKQKYPEATFIDAKGKLIMPGFINTHNHFYSTFARGMMADIPPPPDFISILKNLWWRLDR   98 (441)
T ss_pred             eccEEEEECCEEEEEcCchhhcccCCCCeEEeCCCCEEecCeeecccchhhhhhccccccCCCCCCHHHHHHHHHHHhhh
Confidence            3578999999999999864332222456789999999999999999999542110          00             


Q ss_pred             ----cch----HHHHHHHHhCCceEEEeCCCCCCC-CCCcHHHHHHHHHHHhcCCceEEEEecccc-CCCccchHHHHHH
Q 013050           59 ----EGF----PSGTKAAAAGGITTLIDMPLNSDP-STISTETLKLKVDAAEKRIYVDVGFWGGLV-PENAYNASALEAL  128 (450)
Q Consensus        59 ----~~~----~~~~~~~~~~GvT~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  128 (450)
                          ++.    .....+++++|||+++++. .... .....+.+.........+..+.+....... ....+.++...++
T Consensus        99 ~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~-~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~l~~~~~~  177 (441)
T TIGR03314        99 ALTLEDVYYSGLICSLDAIKSGCTTVIDHH-ASPNAITGSLSTIRKAADEAGLRTMLCYETSDRDGGKEMQEGVEENIAF  177 (441)
T ss_pred             hCCHHHHHHHHHHHHHHHHHcCCeEEEecc-cccccccchHHHHHHHHHHhCCeEEEeeeeecCCCcccHHHHHHHHHHH
Confidence                000    1123367899999999984 2111 111122222222222122222222221100 0001112222222


Q ss_pred             HH--cC--CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCh-hhhhhhhhhccCcCCccccccccCCC
Q 013050          129 LN--AG--VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKTR  203 (450)
Q Consensus       129 ~~--~g--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (450)
                      .+  .+  ...+...+.+.   ....++++.++++.+.|+++++++.+|+.+. .....+....+              .
T Consensus       178 ~~~~~~~~~~~i~~~~~p~---~~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~~g--------------~  240 (441)
T TIGR03314       178 IKKSSGKEPYLVEAHIGAH---APFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKYG--------------K  240 (441)
T ss_pred             HHHhccCCCCceEEEEecC---CCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHcC--------------C
Confidence            22  11  11233333332   2246789999999999999999999999443 22222222211              0


Q ss_pred             ChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEE
Q 013050          204 PPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC  283 (450)
Q Consensus       204 p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  283 (450)
                            ..++.+.++.-        -+.++.+.|+..  -+.+.++.+++.|..+..  ||.......            
T Consensus       241 ------~~~~~l~~~G~--------l~~~~~~~H~~~--~~~~d~~~la~~g~~v~~--cP~sn~~l~------------  290 (441)
T TIGR03314       241 ------DIVERLADFGL--------LGSKTLAAHCIY--LSDREIELLNETDTFVVH--NPESNMGNA------------  290 (441)
T ss_pred             ------CHHHHHHHCCC--------CCCCeEEEEEec--CCHHHHHHHHHcCCcEEE--CHHHHhhhc------------
Confidence                  01222222211        134455555554  222356666667765554  775432110            


Q ss_pred             cCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH--hcCCCHHHHHHH
Q 013050          284 APPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR--KYGVTLEQLASW  361 (450)
Q Consensus       284 ~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~gls~~~al~~  361 (450)
                             .....+.++++.|+.+++|||+.+.+....+                  .+...++...  +....+.++++|
T Consensus       291 -------~G~~p~~~~~~~Gv~v~LGtD~~~~d~~~em------------------~~a~~~~~~~~~~~~~~~~~~~~~  345 (441)
T TIGR03314       291 -------VGYNPVLRMFKNGILLGLGTDGYTSDMFESL------------------KFANFKHKDAGGDLNAAWPESPAM  345 (441)
T ss_pred             -------cCCCCHHHHHHCCCEEEEcCCCCCcCHHHHH------------------HHHHHHhccccCCCCccHHHHHHH
Confidence                   0111245668899999999997543322211                  1111111111  112245789999


Q ss_pred             HhhchhHHhC--C-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcc
Q 013050          362 WSERPAKLAG--Q-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH  438 (450)
Q Consensus       362 aT~~~A~~lg--~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~  438 (450)
                      +|.|+|++++  + .+.|+|++||.|||+++|.+.++..+.. ++..     .++... ..++|..|||+|++||++|++
T Consensus       346 aT~~ga~al~~~l~~~~G~Le~G~~ADlvv~d~~~~~~~~~~-~~~~-----~lv~~~-~~~~V~~v~V~G~~v~~~~~~  418 (441)
T TIGR03314       346 LFENNNEIAERNFGAKFGRLEPGAKADLIIVDYNAPTPLTAD-NING-----HILFGM-NGGSVDSTMVNGKVVMEDREF  418 (441)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCCCcccEEEEcCCCCeeechh-hccc-----cceecC-CCCeeEEEEECCEEEEECCcc
Confidence            9999999997  3 4689999999999999998876554332 2111     112111 146899999999999999999


Q ss_pred             cCCCCCc
Q 013050          439 APAACGS  445 (450)
Q Consensus       439 ~~~~~g~  445 (450)
                      +..+..+
T Consensus       419 ~~~d~~~  425 (441)
T TIGR03314       419 LHFDEAP  425 (441)
T ss_pred             cccCHHH
Confidence            8765443

Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.

>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA

Probab=100.00  E-value=5e-30  Score=242.36  Aligned_cols=348  Identities=21%  Similarity=0.235  Sum_probs=211.6

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCc-EEecCCCEEeccceeeccccCCCCCC-c--ccchHHHHHHHHhCCceEEEe
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQ-VVDYGEAVIMPGLIDVHAHLDDPGRT-E--WEGFPSGTKAAAAGGITTLID   78 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~-viD~~g~~v~PG~iD~H~H~~~~~~~-~--~~~~~~~~~~~~~~GvT~~~~   78 (450)
                      .++|+|+||||++|++..+....+...+ ++|++|++|+|||||+|+|+...+.. .  .........+++++||||+++
T Consensus        17 ~~dvlI~~gkI~~Ig~~~~~~~~~~~~~~i~d~~G~~v~PGlID~HvH~~~gg~~~~~~~~~~e~~~~e~l~~GvTTv~d   96 (389)
T TIGR01975        17 KKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQHVHIIGGGGEGGPTTRTPELTLSDITKGGVTTVVG   96 (389)
T ss_pred             ceeEEEECCEEEEEcCCccccccCCCCeEEECCCCCEEccCEeehhhccccccccCCCccCCHHHHHHHHHhCCcEEEec
Confidence            4689999999999998765432122344 55669999999999999998653111 1  122334677889999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc----CCCccchHHHHHHHHcCCcEEE-EecccCCCCCCCCCCH
Q 013050           79 MPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV----PENAYNASALEALLNAGVLGLK-SFMCPSGINDFPMTNA  153 (450)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~  153 (450)
                      +. ++.......+.+....+.+.......+...+...    .-+......+..  ..-+.|++ .-+..   +.....+.
T Consensus        97 ~~-g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~~p~~t~t~~~~~d~~~--~d~iiG~~~ia~sd---~r~~~~~~  170 (389)
T TIGR01975        97 LL-GTDGITRHMESLLAKARALEEEGISCYMLTGAYHVPSRTITGSVESDLLL--IDKVIGVGEIAISD---HRSAQPTV  170 (389)
T ss_pred             Cc-ccCccccChhhHHHHHHHHHHhCCEEEEEcccccCCCcccccchhhheee--ehhhcccceEEEcc---CcCCCCCH
Confidence            85 5555555555444444444433222232222211    011111111111  22334443 22211   12235788


Q ss_pred             HHHHHHHHHHHhcC----Cc--EEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCC
Q 013050          154 SHIKEGLSVLARYK----RP--LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP  227 (450)
Q Consensus       154 ~~l~~~~~~a~~~g----~~--v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~  227 (450)
                      ++++++.+.++..|    ++  +++|..+..                               ..++.+.++.++.     
T Consensus       171 ~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~-------------------------------~~l~~l~~~~~~~-----  214 (389)
T TIGR01975       171 EHLTNMAAEARVGGLLGGKPGIVNFHVGDSK-------------------------------RALQPIYELVENT-----  214 (389)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEeCCch-------------------------------hhHHHHHHHHHhc-----
Confidence            99999999999998    99  999995432                               2467788888765     


Q ss_pred             CCCceEEEEe---cCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCC
Q 013050          228 AEGAHLHIVH---LSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH  304 (450)
Q Consensus       228 ~~~~~~~~~h---~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  304 (450)
                        +++.|+.+   +.....-.+...++.++|..+-+........+             ..   ......+.+..+++.|+
T Consensus       215 --di~~~~f~pth~~r~~~l~~~~i~~~~~gg~iDv~~~~~~~~l-------------~~---~~~~~~~~~~~~~~~Gv  276 (389)
T TIGR01975       215 --DVPITQFLPTHINRNVPLFEAGLEFAKKGGTIDLTSSIDPQFR-------------KE---GEVAPAEGIKKALEAGV  276 (389)
T ss_pred             --CCChhheecCccCCCHHHHHHHHHHHHhCCcEEEeCCCCccch-------------hc---cccChHHHHHHHHHcCC
Confidence              66666544   43222344444444444433332211000000             00   11223445677888998


Q ss_pred             e---eEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccC
Q 013050          305 I---DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIG  381 (450)
Q Consensus       305 ~---~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G  381 (450)
                      .   ++++||...+.+....  .+.+.  ..|..+....+..+.......++|++++++++|.|||++||+++.|+|++|
T Consensus       277 ~~~~i~isSD~~gs~p~~~~--~g~~~--~~g~g~~~sl~~~~~~lv~~g~ls~~eal~~~T~npA~~Lgl~~~G~I~~G  352 (389)
T TIGR01975       277 PLEKVTFSSDGNGSQPFFDE--NGELT--GLGVGSFETLFEEVREAVKDGDVPLEKALRVITSNVAGVLNLTGKGEISPG  352 (389)
T ss_pred             CcceEEEEeCCCCCCCcccc--ccccc--cCCcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCCCCCeECCC
Confidence            6   4899997532222111  11111  224445444444443334555699999999999999999999668999999


Q ss_pred             CCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC
Q 013050          382 NHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA  441 (450)
Q Consensus       382 ~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~  441 (450)
                      +.|||+++|.+.                           ++..||.+|++++++|+++.+
T Consensus       353 ~~ADlvild~~~---------------------------~i~~v~~~G~~v~~~g~~~~~  385 (389)
T TIGR01975       353 NDADLVVLDPDL---------------------------RIHSVIARGKLMVKDGKACVK  385 (389)
T ss_pred             CcCCEEEEcCCC---------------------------CEEEEEECCEEEEECCEEEec
Confidence            999999999551                           578999999999999998855

The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.

>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide

Probab=100.00  E-value=1e-30  Score=249.46  Aligned_cols=335  Identities=24%  Similarity=0.308  Sum_probs=215.3

Q ss_pred             cceeEEEeCCEEEEeccCCCCCC---------CCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPR---------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG   72 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~---------~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~G   72 (450)
                      .+++|.|+||+|++|++..+...         ...+.++||++|++|+|||||+|+|+..++.         .+.+++.|
T Consensus        81 ~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~~~P~~---------~~aAlagG  151 (567)
T cd00375          81 YKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHFICPQQ---------IEEALASG  151 (567)
T ss_pred             EEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCCCCccH---------HHHHHcCC
Confidence            46799999999999997532210         0135689999999999999999999876542         47889999


Q ss_pred             ceEEEeCCC------CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCC
Q 013050           73 ITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN  146 (450)
Q Consensus        73 vT~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  146 (450)
                      |||+++++.      +..+.......+....+... ..++++.+++..   +....+.+.++.+.|+.+++.+..+    
T Consensus       152 VTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~-~~pin~g~~gkg---~~~~l~eL~e~~~aGA~GfK~~eD~----  223 (567)
T cd00375         152 ITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAAD-GLPVNIGFLGKG---NGSSPDALAEQIEAGACGLKLHEDW----  223 (567)
T ss_pred             CcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhh-cCCceEEEEecC---ccccHHHHHHHHHcCCEEEEecCCC----
Confidence            999999731      22344555677777776666 346888887532   2345678888899999999986433    


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050          147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG  226 (450)
Q Consensus       147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~  226 (450)
                         ..++..+.++++.|++++.++.+|++..+.                             ...++..+....      
T Consensus       224 ---g~t~~~i~~aL~~A~~~dv~VaiHadtlne-----------------------------~g~~E~t~aa~~------  265 (567)
T cd00375         224 ---GATPAAIDTCLSVADEYDVQVAIHTDTLNE-----------------------------SGFVEDTIAAIK------  265 (567)
T ss_pred             ---CCCHHHHHHHHHHHHhhCCEEEEECCCCCc-----------------------------chHHHHHHHHhc------
Confidence               358889999999999999999999976442                             112333333322      


Q ss_pred             CCCCceEEEEecCCh--hHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCCh------hhH-
Q 013050          227 PAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDA------ANK-  293 (450)
Q Consensus       227 ~~~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~-  293 (450)
                         |..+|..|....  ....+.++.+...++..+ +.+| ..-++.+.+..    .-.+.+.+|.+.+-      +-+ 
T Consensus       266 ---gr~iH~~H~egaggghapdi~~~~~~~nvlp~-stnp-t~p~t~nt~~e~~dm~m~~h~l~~~~~~d~~fa~srir~  340 (567)
T cd00375         266 ---GRTIHTYHTEGAGGGHAPDIIKVAGHPNVLPS-STNP-TRPFTVNTLDEHLDMLMVCHHLDPNIPEDVAFAESRIRA  340 (567)
T ss_pred             ---CCeEEEEecCCCCcccchHHHHhcCCCCcccC-CCCC-CCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccc
Confidence               889999999753  133455555543332111 1111 22222222211    12233444443111      111 


Q ss_pred             HHH---HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH---H-HhcC--------CCH---
Q 013050          294 EKL---WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY---G-RKYG--------VTL---  355 (450)
Q Consensus       294 ~~l---~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~-~~~g--------ls~---  355 (450)
                      +-+   .-+.+.|+..+++||+...-..                   .......|+.   . +..|        .+.   
T Consensus       341 ~ti~ae~~l~d~G~~s~~~sDs~~mgr~-------------------ge~~~r~~q~a~k~~~~~g~~~~~~~~~~n~r~  401 (567)
T cd00375         341 ETIAAEDVLHDLGAISIMSSDSQAMGRV-------------------GEVILRTWQTAHKMKAQRGPLPEDSGDADNFRV  401 (567)
T ss_pred             hhhccchhhhccCcEEEEccchhhcCcc-------------------ceeeechHHHHHHHHHhcCCCCcccccCchHHH
Confidence            111   1134469999999997532110                   0001111111   1 1123        333   


Q ss_pred             HHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050          356 EQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK  434 (450)
Q Consensus       356 ~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~  434 (450)
                      .+.|+++|.|||+++|+ +++|+|++||.||||||+.+..                        ..++..||++|+++|.
T Consensus       402 ~~~L~~~Tin~A~alG~~~~vGSLe~GK~ADlVv~d~~~f------------------------~~~p~~vi~~G~iv~~  457 (567)
T cd00375         402 KRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWEPAFF------------------------GVKPEMVLKGGFIAYA  457 (567)
T ss_pred             HHHHHHhhHHHHHHcCcccCceeeCCCCccCEEEEcCccc------------------------CCCeeEEEECCEEEEe
Confidence            44599999999999999 7899999999999999996531                        0256799999999999


Q ss_pred             c-Cccc
Q 013050          435 E-GNHA  439 (450)
Q Consensus       435 ~-g~~~  439 (450)
                      . |.+.
T Consensus       458 ~~gd~n  463 (567)
T cd00375         458 QMGDPN  463 (567)
T ss_pred             cCCCcc
Confidence            7 6544

Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.

>PRK12393 amidohydrolase; Provisional

Probab=100.00  E-value=6.6e-31  Score=256.85  Aligned_cols=362  Identities=16%  Similarity=0.143  Sum_probs=201.0

Q ss_pred             eeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC-----------cc--------------
Q 013050            4 RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-----------EW--------------   58 (450)
Q Consensus         4 ~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~-----------~~--------------   58 (450)
                      ++|+|++|+|++|++.. .   .++.++||+.|++|+|||||+|+|+....+.           .|              
T Consensus        26 ~~v~I~~g~I~~Vg~~~-~---~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~rg~~~~~~~~~~~wl~~~~~~~~~~~~~  101 (457)
T PRK12393         26 PDIRIRDGRIAAIGALT-P---LPGERVIDATDCVVYPGWVNTHHHLFQSLLKGVPAGINQSLTAWLAAVPYRFRARFDE  101 (457)
T ss_pred             ceEEEECCEEEEEeccC-C---CCCCeEEeCCCCEEecCEeecccCcccccccccccccCCchHHHhhhCcchhhhhCCH
Confidence            38999999999999832 1   2467899999999999999999999753111           00              


Q ss_pred             cc----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEE-eccc----------cC-CCc---
Q 013050           59 EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF-WGGL----------VP-ENA---  119 (450)
Q Consensus        59 ~~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~-~~~---  119 (450)
                      +.    ......+++.+|||+++|+. ................+..... .++... .+..          .. ...   
T Consensus       102 ~~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~~~~~~~~~~~~~~a~~~~-G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (457)
T PRK12393        102 DLFRLAARIGLVELLRSGCTTVADHH-YLYHPGMPFDTGDILFDEAEAL-GMRFVLCRGGATQTRGDHPGLPTALRPETL  179 (457)
T ss_pred             HHHHHHHHHHHHHHHhCCccEeecch-hhcccccccchHHHHHHHHHHc-CCeEEEEccccccccccCCCCCCcccccCH
Confidence            00    12234477899999999984 1111111122222222222221 222211 1100          00 001   


Q ss_pred             -cchHHHHHHHHc---CC-c-EEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChh-hhhhhhhhccCcCC
Q 013050          120 -YNASALEALLNA---GV-L-GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLD  192 (450)
Q Consensus       120 -~~~~~~~~~~~~---g~-~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~  192 (450)
                       +.++....+.+.   +. . .+...+.+..  ....++++.+.++++.|+++|+++.+|+.+.. .++......+    
T Consensus       180 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~l~~~~~~a~~~g~~~~~H~~e~~~~~~~~~~~~g----  253 (457)
T PRK12393        180 DQMLADVERLVSRYHDASPDSLRRVVVAPTT--PTFSLPPELLREVARAARGMGLRLHSHLSETVDYVDFCREKYG----  253 (457)
T ss_pred             HHHHHHHHHHHHHhcCCCcCCceEEEEcCCC--CCCCcCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHhC----
Confidence             112223333321   11 0 1222222211  11357889999999999999999999995322 1111111100    


Q ss_pred             ccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccc
Q 013050          193 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE  272 (450)
Q Consensus       193 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~  272 (450)
                               ..       .++.+    .....    -+.++.+.|+..  -+.+.++.+++.|+.+..  ||......  
T Consensus       254 ---------~~-------~~~~l----~~~g~----l~~~~~~~H~~~--l~~~d~~~la~~g~~v~~--~P~sn~~l--  303 (457)
T PRK12393        254 ---------MT-------PVQFV----AEHDW----LGPDVWFAHLVK--LDAEEIALLAQTGTGIAH--CPQSNGRL--  303 (457)
T ss_pred             ---------CC-------HHHHH----HHcCC----CCCCeEEEEEec--CCHHHHHHHHHcCCeEEE--Cchhhhhh--
Confidence                     00       01111    11100    133454555554  223356666667765554  77432111  


Q ss_pred             ccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhH-HHHHHHHH--H
Q 013050          273 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYG--R  349 (450)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~--~  349 (450)
                           +            .....+.++++.|+.+++|||+.+.+...+++               ..+ +....+..  .
T Consensus       304 -----g------------~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~d~~---------------~~~~~a~~~~~~~~~  351 (457)
T PRK12393        304 -----G------------SGIAPALAMEAAGVPVSLGVDGAASNESADML---------------SEAHAAWLLHRAEGG  351 (457)
T ss_pred             -----c------------ccCCCHHHHHHCCCeEEEecCCcccCCCccHH---------------HHHHHHHHHhhhcCC
Confidence                 0            01123456788999999999975432211111               111 11111111  1


Q ss_pred             hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECC
Q 013050          350 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG  429 (450)
Q Consensus       350 ~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G  429 (450)
                      ...++++++++++|.|||+++|+++.|+|++|+.|||+|+|.+.+...+.. +..     .+++.. ....+|..|||+|
T Consensus       352 ~~~~~~~~~l~~~T~~~A~~l~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~-~~~-----~~~~~~-~~~~~v~~v~v~G  424 (457)
T PRK12393        352 ADATTVEDVVHWGTAGGARVLGLDAIGTLAVGQAADLAIYDLDDPRFFGLH-DPA-----IAPVAC-GGPAPVKALLVNG  424 (457)
T ss_pred             CCCCCHHHHHHHHhHHHHHHhCCCCCCCcCCCCcCCEEEEeCCCcccCCCC-Cch-----hhhhcc-CCCCCeeEEEECC
Confidence            124899999999999999999995489999999999999998875443322 110     111111 1135799999999


Q ss_pred             eEEEecCcccCCCCCcc
Q 013050          430 NLVYKEGNHAPAACGSP  446 (450)
Q Consensus       430 ~~v~~~g~~~~~~~g~~  446 (450)
                      +++|++|+++..+.+..
T Consensus       425 ~~v~~~~~~~~~d~~~i  441 (457)
T PRK12393        425 RPVVENGAIPGLDLAEL  441 (457)
T ss_pred             EEEEECCccCCCCHHHH
Confidence            99999999987665544

>PRK13309 ureC urease subunit alpha; Reviewed

Probab=100.00  E-value=1.4e-30  Score=251.43  Aligned_cols=340  Identities=21%  Similarity=0.217  Sum_probs=216.7

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCC---------CCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRN---------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG   72 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~---------~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~G   72 (450)
                      ++++|.|+||+|++|++...+...         ..+.++||++|++|+|||||+|+|+..+++         .+.++..|
T Consensus        85 ~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~~P~~---------~~aAl~gG  155 (572)
T PRK13309         85 IKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLISPQQ---------AYHALSNG  155 (572)
T ss_pred             EEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccCCcch---------HHHHHcCc
Confidence            468999999999999975432100         124689999999999999999999887652         26789999


Q ss_pred             ceEEEeCCC------CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCC
Q 013050           73 ITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN  146 (450)
Q Consensus        73 vT~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  146 (450)
                      |||+++++.      +..+.......+..+.+... ..++++.+++..   +....+.+.++.+.|+.+++.+..+    
T Consensus       156 VTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~-~~pvn~g~~gkg---~~~~~~~l~el~~aGa~gfk~~~d~----  227 (572)
T PRK13309        156 VTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIE-GLPVNVGILGKG---NSYGRGPLLEQAIAGVAGYKVHEDW----  227 (572)
T ss_pred             eEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhc-cCCcCEEEEcCC---CCCCHHHHHHHHhcCcEEEEecCcC----
Confidence            999997531      22233444556666666665 346788877532   2233467778889999999986433    


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050          147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG  226 (450)
Q Consensus       147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~  226 (450)
                         ..+.+.+.++++.|++++.++.+|++..+.                             ...++..  ++.      
T Consensus       228 ---g~t~~~L~~aLe~A~~~gv~VaiH~d~lnE-----------------------------~g~vE~~--~aa------  267 (572)
T PRK13309        228 ---GATAAALRHALRVADEVDIQVAVHTDSLNE-----------------------------CGYVEDT--IDA------  267 (572)
T ss_pred             ---CcCHHHHHHHHHHHHhcCCEEEEeCCcccc-----------------------------chhHHHH--HHH------
Confidence               358889999999999999999999966432                             1123333  222      


Q ss_pred             CCCCceEEEEecCCh--hHHHHHHHHHHhCCCcEE--EecCcchhcccccccCCCCCceEEcCCCCCh----------hh
Q 013050          227 PAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSIT--VETCPHYLAFSAEEIPDGDTRFKCAPPIRDA----------AN  292 (450)
Q Consensus       227 ~~~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~  292 (450)
                       ..+.++|..|....  ....+.++-+...++..+  ....|+..-.-.+.+...-.+.+.++.+.+-          ..
T Consensus       268 -~~grpih~~H~~Gaggghapd~~~~~~~~~~~~~st~pt~p~~~~~~~e~~~m~m~~h~l~~~~~~D~~~a~srig~e~  346 (572)
T PRK13309        268 -FEGRTIHTFHTEGAGGGHAPDIIKVASQTNVLPSSTNPTLPYGVNSQAELFDMIMVCHNLNPNVPADVAFAESRVRPET  346 (572)
T ss_pred             -hCCCceeeeeccCcccCCchhHHHhcCCCCcccCCCCCCCCCcccchHhhhchhhhhccCCCCCCCChhHHHHhhCchh
Confidence             22788998888643  134455555443332111  1112221111111122222344445443211          11


Q ss_pred             HHHHHHHHhcCCeeEEcCCCCCCC--hhhhcccCCCccccCCCCcchhhHHHHHHHH----------HHhcCCCHHHHHH
Q 013050          293 KEKLWEALMDGHIDMLSSDHSPTV--PELKLLDEGNFLKAWGGISSLQFVLPVTWSY----------GRKYGVTLEQLAS  360 (450)
Q Consensus       293 ~~~l~~~~~~g~~~~~gtD~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------~~~~gls~~~al~  360 (450)
                      ..+...+++.|+.++++||+....  ....                ...........          .....++..++|+
T Consensus       347 ~~a~~~l~daGa~~~~gSD~pv~gr~~~~p----------------~~~iq~Av~rk~~~g~l~~~~~~~~~~~v~~aL~  410 (572)
T PRK13309        347 IAAENVLHDMGVISMFSSDSQAMGRVGENW----------------LRAIQTADAMKAARGKLPEDAAGNDNFRVLRYVA  410 (572)
T ss_pred             hcchhHHHhCCCEEEEcCCCCcccCCcccH----------------HHHHHHHHHHHhccCCCCccCCCcccccHHHHHH
Confidence            123355777899999999964210  0000                00000000000          0123478899999


Q ss_pred             HHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec-Ccc
Q 013050          361 WWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE-GNH  438 (450)
Q Consensus       361 ~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~-g~~  438 (450)
                      ++|.|||+++|+ +++|+|++||+|||+|||.+..          .              .++..||++|++||.. |.+
T Consensus       411 ~yT~n~A~a~g~e~~~GsLe~Gk~ADlvvld~d~f----------~--------------~~~~~vi~~G~iv~~~~gd~  466 (572)
T PRK13309        411 KITINPAITQGVSHVIGSVEVGKMADLVLWEPRFF----------G--------------AKPKMVIKGGMINWAAMGDP  466 (572)
T ss_pred             HHhHHHHHHcCcccCccccCCCCcCCEEEEchhhc----------C--------------CCccEEEECCEEEEecCCCc
Confidence            999999999999 7899999999999999995531          0              2568999999999988 665


Q ss_pred             c
Q 013050          439 A  439 (450)
Q Consensus       439 ~  439 (450)
                      .
T Consensus       467 ~  467 (572)
T PRK13309        467 N  467 (572)
T ss_pred             c
Confidence            4

>PRK08393 N-ethylammeline chlorohydrolase; Provisional

Probab=100.00  E-value=7.8e-31  Score=254.58  Aligned_cols=349  Identities=16%  Similarity=0.126  Sum_probs=195.5

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC---------cc--------------c
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------EW--------------E   59 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---------~~--------------~   59 (450)
                      +++|.|+||+|++|++....    +..+++|+.|++|+|||||+|+|+......         .|              +
T Consensus        20 ~~~i~i~~g~I~~v~~~~~~----~~~~~id~~~~~v~Pg~vd~H~H~~~~~~rg~~~~~~l~~~l~~~~~~~~~~~~~~   95 (424)
T PRK08393         20 RADVLIEGNKIVEVKRNINK----PADTVIDASGSVVSPGFINAHTHSPMVLLRGLADDVPLMEWLQNYIWPRERKLKRK   95 (424)
T ss_pred             cceEEEECCEEEEecCCCCC----CCCeEEeCCCCEEccCeeeeccCcchHhhhhccCCCCHHHHHHhhhccccccCCHH
Confidence            57899999999999875332    345799999999999999999998642110         00              0


Q ss_pred             c----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHH---HHH--
Q 013050           60 G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEA---LLN--  130 (450)
Q Consensus        60 ~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--  130 (450)
                      +    ......+++++|+||+.++. .      ....+.........+....+....  ........+.+.+   +.+  
T Consensus        96 ~~~~~a~~~~~e~l~~GvTtv~d~~-~------~~~~~~~a~~~~G~r~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~  166 (424)
T PRK08393         96 DIYWGAYLGLLEMIKSGTTTFVDMY-F------HMEEVAKATLEVGLRGYLSYGMVD--LGDEEKREKEIKETEKLMEFI  166 (424)
T ss_pred             HHHHHHHHHHHHHHhcCceEEeccc-c------CHHHHHHHHHHhCCeEEEeceEec--CCCccchHHHHHHHHHHHHHH
Confidence            1    11234477899999999984 1      122222222221111111111111  0111111122221   211  


Q ss_pred             --cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChh-hhhhhhhhccCcCCccccccccCCCChHH
Q 013050          131 --AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSW  207 (450)
Q Consensus       131 --~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  207 (450)
                        .+...+...+.+.   ....++++.++++++.|+++|+++.+|+.+.. .+....+..+              .    
T Consensus       167 ~~~~~~~v~~~~~p~---~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g--------------~----  225 (424)
T PRK08393        167 EKLNSPRVHFVFGPH---APYTCSLALLKWVREKAREWNKLITIHLSETMDEIKQIREKYG--------------K----  225 (424)
T ss_pred             hcCCCCceEEEEeCC---cCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC--------------c----
Confidence              1221222222221   12347889999999999999999999994332 2121111111              0    


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCC
Q 013050          208 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI  287 (450)
Q Consensus       208 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (450)
                        ..++.+.++..    .    +.++.+.|+...  +.+.++.+++.|+.+..  ||......       +         
T Consensus       226 --~~~~~l~~~G~----l----~~~~~~~H~~~l--~~~~l~~la~~g~~v~~--~P~sn~~l-------g---------  275 (424)
T PRK08393        226 --SPVVLLDEIGF----L----NEDVIAAHGVWL--SSRDIRILASAGVTVAH--NPASNMKL-------G---------  275 (424)
T ss_pred             --CHHHHHHHcCC----C----CCCcEEEEeecC--CHHHHHHHHhcCCEEEE--CHHHHHhh-------c---------
Confidence              01112211111    1    334445555532  22456666677765544  77432110       0         


Q ss_pred             CChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh---cCCCHHHHHHHHhh
Q 013050          288 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK---YGVTLEQLASWWSE  364 (450)
Q Consensus       288 ~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~gls~~~al~~aT~  364 (450)
                         .....+.++++.|+.+++|||....+...+++.              +..+...+.....   ..++++++++++|.
T Consensus       276 ---~g~~~~~~~~~~Gv~v~lGtD~~~~~~~~d~~~--------------~~~~a~~~~~~~~~~~~~~~~~~al~~aT~  338 (424)
T PRK08393        276 ---SGVMPLRKLLNAGVNVALGTDGAASNNNLDMLR--------------EMKLAALLHKVHNLDPTIADAETVFRMATQ  338 (424)
T ss_pred             ---cCCCCHHHHHHCCCcEEEecCCCccCCchhHHH--------------HHHHHHHHHhhccCCCCcCCHHHHHHHHHH
Confidence               011124566788999999999754322111110              0111111111111   12578999999999


Q ss_pred             chhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECCeEEEecCcccCC
Q 013050          365 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKEGNHAPA  441 (450)
Q Consensus       365 ~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~v~~~g~~~~~  441 (450)
                      |||+++|++ .|+|++||+||||++|.+.+...+..          .|+....+   .++|..|||+|++||++|++++.
T Consensus       339 ~~A~~lg~~-~G~l~~G~~ADlvvld~~~~~~~~~~----------~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~  407 (424)
T PRK08393        339 NGAKALGLK-AGVIKEGYLADIAVIDFNRPHLRPIN----------NPISHLVYSANGNDVETTIVDGKIVMLDGEVLTL  407 (424)
T ss_pred             HHHHHhCCC-CCccCCCCccCEEEEeCCCCCcCCCC----------ChHHHeeeeCCCCCeeEEEECCEEEEECCeECCC
Confidence            999999995 69999999999999998865443322          22222222   25799999999999999999765


Q ss_pred             CC
Q 013050          442 AC  443 (450)
Q Consensus       442 ~~  443 (450)
                      +.
T Consensus       408 d~  409 (424)
T PRK08393        408 DE  409 (424)
T ss_pred             CH
Confidence            43

>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type

Probab=100.00  E-value=6.8e-30  Score=238.07  Aligned_cols=330  Identities=18%  Similarity=0.223  Sum_probs=253.0

Q ss_pred             EEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc--eEEEEecccc
Q 013050           38 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY--VDVGFWGGLV  115 (450)
Q Consensus        38 ~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  115 (450)
                      +.+|---|+|+|+.+..      +....-.+...|||++++++ ++.|.....+.+....+.+....+  +++..++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~vt~vv~mP-nt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v~   74 (341)
T TIGR00856         2 LTIRRPDDWHLHLRDGA------MLKAVLPYTSEIFSRAIVMP-NLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTLY   74 (341)
T ss_pred             ceecCccceeeeccCch------HHHHHHHHHHhhcCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEEE
Confidence            46788889999998754      44555556677899999998 777777677777777777666653  5788888776


Q ss_pred             CCCccchHHHHHHHHc-CCcEEEEecccCCCC-CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCc
Q 013050          116 PENAYNASALEALLNA-GVLGLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT  193 (450)
Q Consensus       116 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~  193 (450)
                      .......+++.++.+. |+.++|.|+...+.. +.+..+...+.++++.+++.|+++.+|+++...          ....
T Consensus        75 ~~~~~~~~Ei~~l~~~~Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~----------~i~~  144 (341)
T TIGR00856        75 LTDSLTPEELERAKNEGVVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHG----------DIDI  144 (341)
T ss_pred             CCCCCCHHHHHHHHHcCCeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCC----------Cccc
Confidence            5544466788888877 999999986432211 222345588999999999999999999976421          0000


Q ss_pred             cccccccCCCChHHHHHHHH-HHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccc
Q 013050          194 RSYSTYLKTRPPSWEEAAIR-ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE  272 (450)
Q Consensus       194 ~~~~~~~~~~p~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~  272 (450)
                      .           ..+...+. .+..++.+      .++.++|+.|+++. ++++.+++++.   .+++++||||+.++.+
T Consensus       145 ~-----------~~e~~a~~~~i~~lA~~------~~~~~~~i~H~st~-~~~~~i~~a~~---~vt~E~~ph~L~l~~~  203 (341)
T TIGR00856       145 F-----------DREARFIESVLEPLRQR------FPALKVVLEHITTK-DAIDYVEDGNN---RLAATITPQHLMFTRN  203 (341)
T ss_pred             c-----------cchhhhhHHHHHHHHHH------ccCCeEEEEecCcH-HHHHHHHHcCC---CEEEEEcHHHHhccHH
Confidence            0           00222234 33344443      34889999999998 99999988754   3999999999999998


Q ss_pred             ccCC--CCCceEEcCCCCChhhHHHHHHHHhcCCee-EEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH
Q 013050          273 EIPD--GDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR  349 (450)
Q Consensus       273 ~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  349 (450)
                      .+..  ++..++++||+|...+++.+|+++.+|... +++|||+|+....+..     +.++.|+.+++..++.++... 
T Consensus       204 ~~~~~~~~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~~~~K~~-----~~~~~G~~g~e~~l~~~~~~~-  277 (341)
T TIGR00856       204 DLLGGGVNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHARHRKES-----SCGCAGCFSAPTALPSYAEVF-  277 (341)
T ss_pred             HHhccCCCCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChhHcCC-----CCCCCCcccHHHHHHHHHHHH-
Confidence            8755  578899999999999999999999999999 6999999998777642     136789999999999887655 


Q ss_pred             hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccC-CceEeeEE
Q 013050          350 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYL-GRRLSGKV  422 (450)
Q Consensus       350 ~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v  422 (450)
                      +.++|+++++++.+.|||+++|++ .|      .|||+|++  ..+++... .+.+... ++||. |..+.++|
T Consensus       278 ~~~~~l~~~v~~~s~nPAk~~gl~-~~------dAdi~~~~--~~~~i~~~-~~~s~~~-~sp~~~~~~~~~~v  340 (341)
T TIGR00856       278 EEMNALENLEAFCSDNGPQFYGLP-VN------STKIELVK--KEQQIPES-IALTDDT-LVPFRAGETLSWSV  340 (341)
T ss_pred             hcCCCHHHHHHHHhHhHHHHhCCC-CC------CceEEEEe--ccEEeCch-hccCCCC-cccccCCcccceee
Confidence            448999999999999999999993 34      89999994  66999888 7888877 99994 66665554

This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.

>TIGR02967 guan_deamin guanine deaminase

Probab=100.00  E-value=2.6e-30  Score=250.04  Aligned_cols=355  Identities=18%  Similarity=0.124  Sum_probs=194.6

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCC-CCCcEEecCCCEEeccceeeccccCCCCCC--------cc--------c----c
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNS-KTGQVVDYGEAVIMPGLIDVHAHLDDPGRT--------EW--------E----G   60 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~-~~~~viD~~g~~v~PG~iD~H~H~~~~~~~--------~~--------~----~   60 (450)
                      .+++|+|+||+|++|++..+..... ++.++||+.|++|||||||+|+|+......        .|        +    +
T Consensus         5 ~~~~V~V~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~~v~PGlId~H~Hl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (401)
T TIGR02967         5 EDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIASYGEQLLEWLEKYTFPTEARFAD   84 (401)
T ss_pred             eceEEEEECCEEEEecCcchhhhccCCCCeEEeCCCCEEecceeecccCchhhhhcccCCchHHHHHhhCcCccccccCC
Confidence            5789999999999999865432111 356899999999999999999998542111        00        0    0


Q ss_pred             -------hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecc-ccC----CCccchHHHHHH
Q 013050           61 -------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG-LVP----ENAYNASALEAL  128 (450)
Q Consensus        61 -------~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~  128 (450)
                             ......+++++|||++++++ ...+  .....+....+....+.......... ...    ......+...++
T Consensus        85 ~~~~~~~a~~~~~e~l~~GvTtv~d~~-~~~~--~~~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  161 (401)
T TIGR02967        85 PDHAEEVAEFFLDELLRNGTTTALVFA-TVHP--ESVDALFEAALKRGMRMIAGKVLMDRNAPDYLRDTAESSYDESKAL  161 (401)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEecc-ccCH--HHHHHHHHHHHHCCCeEEEeeeeecCCCCcccccCHHHHHHHHHHH
Confidence                   01123578999999999985 2211  11112222222111111111111110 000    001122333344


Q ss_pred             HH--cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEecCC-hhhhhhhhhhccCcCCccccccccCCCC
Q 013050          129 LN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRP  204 (450)
Q Consensus       129 ~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p  204 (450)
                      ++  .+...++....+.   ..+.++.+.++++++.|+++ |+++.+|+.+ ...........+             ..|
T Consensus       162 i~~~~~~g~i~~~~~~~---~~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~-------------~~~  225 (401)
T TIGR02967       162 IERWHGKGRLLYAVTPR---FAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFP-------------EAK  225 (401)
T ss_pred             HHHHhCcCCceEEEECC---cCCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcC-------------CCC
Confidence            33  1211233333332   22467889999999999999 9999999943 222111111110             000


Q ss_pred             hHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEc
Q 013050          205 PSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCA  284 (450)
Q Consensus       205 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (450)
                               ...+...+..    .-+.++.+.|+...  +.+.++.+++.|+.+..  ||......       +      
T Consensus       226 ---------~~~~~l~~~g----~lg~~~~~~H~~~~--~~~~~~~l~~~g~~v~~--~P~~~~~~-------~------  275 (401)
T TIGR02967       226 ---------DYLDVYDHYG----LLGRRSVFAHCIHL--SDEECQRLAETGAAIAH--CPTSNLFL-------G------  275 (401)
T ss_pred             ---------cHHHHHHHCC----CCCCCeEEEecccC--CHHHHHHHHHcCCeEEE--ChHHHHHh-------c------
Confidence                     0122222220    11445666777653  23457777777765554  66532110       0      


Q ss_pred             CCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhH-HHHHHHHHHhcCCCHHHHHHHHh
Q 013050          285 PPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYGRKYGVTLEQLASWWS  363 (450)
Q Consensus       285 ~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~gls~~~al~~aT  363 (450)
                            .....+.++++.|+.+++|||+...+.. ++               .+.. ....+......+++++++++|+|
T Consensus       276 ------~g~~~~~~~~~~Gv~v~lGtD~~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~aT  333 (401)
T TIGR02967       276 ------SGLFNLKKALEHGVRVGLGTDVGGGTSF-SM---------------LQTLREAYKVSQLQGARLSPFEAFYLAT  333 (401)
T ss_pred             ------cCCCCHHHHHHCCCeEEEecCCCCCCCc-CH---------------HHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence                  0011245668889999999996432110 10               1111 11111112235699999999999


Q ss_pred             hchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEe---eEEEEEEECC
Q 013050          364 ERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS---GKVLATISRG  429 (450)
Q Consensus       364 ~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~v~G  429 (450)
                      .|||+++|+ +++|+|++||.|||+++|.+.+...+.. -...... ..|+...++.   .+|+.|||+|
T Consensus       334 ~~~A~~lg~~~~~G~i~~G~~ADlvi~d~~~~~~~~~~-~~~~~~~-~~~~~~~v~~~~~~~v~~v~v~G  401 (401)
T TIGR02967       334 LGGARALDLDDRIGNFEPGKEADFVVLDPAATPLLALR-FEGADTL-EDKLFKLMYLGDDRNVAETYVAG  401 (401)
T ss_pred             HHHHHHhCCcCCccccCCCCccCEEEEcCCCCcccccc-cccccch-hhHHHHheeecCccceeEEEeCC
Confidence            999999999 5799999999999999998754221100 0000011 2344444443   4699999998

This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.

>PRK13206 ureC urease subunit alpha; Reviewed

Probab=100.00  E-value=2.7e-30  Score=247.91  Aligned_cols=335  Identities=21%  Similarity=0.228  Sum_probs=211.9

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCC---------CCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRN---------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG   72 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~---------~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~G   72 (450)
                      ++++|.|+||+|++|++..+....         ....++||++|++|+|||||+|+|+..++         ..+.++++|
T Consensus        87 ~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~~~Pg---------~~~aALagG  157 (573)
T PRK13206         87 VKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHFICPQ---------IVDEALAAG  157 (573)
T ss_pred             EEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeeccCCch---------HHHHHHcCC
Confidence            357999999999999975321100         13468999999999999999999987654         238889999


Q ss_pred             ceEEEeCCCCC----CCCCCc--HHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCC
Q 013050           73 ITTLIDMPLNS----DPSTIS--TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN  146 (450)
Q Consensus        73 vT~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  146 (450)
                      |||+++++.+.    .+....  ...+..+.+..+ ..++++.+++..   +....+.+.++.+.|+.++|.+..+    
T Consensus       158 VTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~-~~pvn~g~~g~g---~~~~~~~L~el~~aGA~GfKi~~d~----  229 (573)
T PRK13206        158 ITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALD-GWPVNVALLGKG---NTVSAEALWEQLRGGAGGFKLHEDW----  229 (573)
T ss_pred             eEEEEcCCCCccccCcccccccchhHHHHHHHHhh-cCceeEEEecCc---CcCCHHHHHHHHHCCCcEEeecCcc----
Confidence            99999974221    111111  123334444444 467888888733   2333568899999999999986432    


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050          147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG  226 (450)
Q Consensus       147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~  226 (450)
                         ..+++.+.++++.|++++++|.+|++..+.                             ...++..+....      
T Consensus       230 ---g~t~~~i~~aL~~A~~~gv~V~iHadtlne-----------------------------~g~~E~t~aa~~------  271 (573)
T PRK13206        230 ---GSTPAAIDACLRVADAAGVQVALHSDTLNE-----------------------------AGFVEDTLAAIA------  271 (573)
T ss_pred             ---CCCHHHHHHHHHHHHHhCCEEEEECCCccc-----------------------------cchhhHHHHHhc------
Confidence               478899999999999999999999976542                             112233333333      


Q ss_pred             CCCCceEEEEecCCh--hHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCCh------hhH-
Q 013050          227 PAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDA------ANK-  293 (450)
Q Consensus       227 ~~~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~-  293 (450)
                         |..+|..|....  ....+.++.+...++..+ +.+| ..-++.+.+..    .-.+.+.+|.+.+-      +-+ 
T Consensus       272 ---gr~iH~~H~egaggghapd~~~~~~~~n~lp~-stnp-t~p~~~nt~~e~~~m~m~~h~l~~~~~~d~~fa~srir~  346 (573)
T PRK13206        272 ---GRSIHAYHTEGAGGGHAPDIITVASHPNVLPS-STNP-TRPHTVNTLDEHLDMLMVCHHLNPAVPEDLAFAESRIRP  346 (573)
T ss_pred             ---CCeEEEEeccCCCcCcccHHHHhcCCCCCcCC-CCCC-CCCCcccchhhhhCeEEeeccCCCCCcchhhhhhhhccc
Confidence               888999999753  134555665544432111 1111 12222222211    12233444443211      101 


Q ss_pred             H---HHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH----------HhcCCCHHHHHH
Q 013050          294 E---KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG----------RKYGVTLEQLAS  360 (450)
Q Consensus       294 ~---~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~gls~~~al~  360 (450)
                      +   +-..+++.|+..+++||+......-..              .... +.......          .+..++.+++|+
T Consensus       347 ~ti~ae~~l~d~G~~~~~~SDs~~~~~~~e~--------------~~~~-~q~a~~~~~rr~~l~g~~~~~~~~v~~al~  411 (573)
T PRK13206        347 STIAAEDVLHDMGAISMIGSDSQAMGRIGEV--------------VLRT-WQTAHVMKRRRGALPGDGRADNNRARRYVA  411 (573)
T ss_pred             eeeccCchHhhCCcEEeccCCccccccccch--------------hhhH-HHHHHHHHhccCCCCCCCcccchhHHHHHH
Confidence            0   012356679999999997542111000              0000 00000000          123489999999


Q ss_pred             HHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050          361 WWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE  435 (450)
Q Consensus       361 ~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~  435 (450)
                      ++|.|||+++|+ +.+|+|++||.||||+||.+..          .              .++..||++|+++|..
T Consensus       412 ~yT~nPA~alG~~~~~GsLe~Gk~ADlVvld~d~f----------~--------------~~~~~ti~~G~iv~~~  463 (573)
T PRK13206        412 KYTICPAVAHGIDHEIGSVEVGKLADLVLWEPAFF----------G--------------VRPHAVLKGGAIAWAA  463 (573)
T ss_pred             HHHHHHHHHhCCCcCCcccCCCCcCCEEEECcccc----------C--------------CCccEEEECCEEEEec
Confidence            999999999999 6799999999999999995520          0              1567899999999986

>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]

Probab=99.98  E-value=3.7e-31  Score=255.31  Aligned_cols=216  Identities=23%  Similarity=0.243  Sum_probs=147.6

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050          147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG  226 (450)
Q Consensus       147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~  226 (450)
                      +.+..+.+.|.++++.+.++|+++.+|+-.                                +.+++.+++..++.+...
T Consensus       314 G~~l~~~e~l~~~v~~a~~~gl~v~vHAiG--------------------------------D~Av~~~LdafE~~~~~~  361 (535)
T COG1574         314 GELLLTEEELEELVRAADERGLPVAVHAIG--------------------------------DGAVDAALDAFEKARKKN  361 (535)
T ss_pred             CCcccCHHHHHHHHHHHHHCCCcEEEEEec--------------------------------hHHHHHHHHHHHHHhhhc
Confidence            567789999999999999999999999932                                445788888888876666


Q ss_pred             CCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCCh--hhHHHHHHHHhcCC
Q 013050          227 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA--ANKEKLWEALMDGH  304 (450)
Q Consensus       227 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~g~  304 (450)
                      +..+.+.++.|+..  -..+++++++++|+  .++++|++.......+..         .+...  ....++..+++.|+
T Consensus       362 ~~~~~r~rieH~~~--v~~~~i~R~~~Lgv--~~svQP~f~~~~~~~~~~---------rlG~~r~~~~~p~~~ll~~G~  428 (535)
T COG1574         362 GLKGLRHRIEHAEL--VSPDQIERFAKLGV--IASVQPNFLFSDGEWYVD---------RLGEERASRSYPFRSLLKAGV  428 (535)
T ss_pred             CCccCCceeeeeee--cCHhHHHHHHhcCc--eEeeccccccccchHHHH---------hhhhhhhhccCcHHHHHHCCC
Confidence            55678888999886  56678888888774  555577766543211110         01111  11123456788999


Q ss_pred             eeEEcCCC--CCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccC
Q 013050          305 IDMLSSDH--SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIG  381 (450)
Q Consensus       305 ~~~~gtD~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G  381 (450)
                      .++.|||+  .|.+++......- .-..+.|..           ...+..||++++|+++|.|+|++.+. +++|+|++|
T Consensus       429 ~la~gSD~Pv~~~dP~~~i~~AV-tr~~~~g~~-----------~~~~~~L~~~eAL~~yT~~~A~a~~~e~~~G~Le~G  496 (535)
T COG1574         429 PLAGGSDAPVEPYDPWLGIYAAV-TRKTPGGRV-----------LGPEERLTREEALRAYTEGGAYASGAEGEKGSLEPG  496 (535)
T ss_pred             eEeccCCCCCCCCChHHHHHHHH-cCCCCCCCC-----------CccccccCHHHHHHHHhhhhHHhhhccccccccccC
Confidence            99999997  3333332110000 000000000           00011599999999999999999999 889999999


Q ss_pred             CCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050          382 NHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE  435 (450)
Q Consensus       382 ~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~  435 (450)
                      |.|||+|+|.|+ ++++.+               .....+|..|+++||+||+.
T Consensus       497 ~~AD~~Vld~d~-f~~~~~---------------~i~~~~v~~T~~~Gk~VY~~  534 (535)
T COG1574         497 KLADFAVLDRDP-FTVDPD---------------SIKDTKVVLTIVAGKVVYRA  534 (535)
T ss_pred             ceeeEEEecCCc-ccCChH---------------HhccceEEEEEEcCeEeecC
Confidence            999999999765 433322               22235899999999999974

>cd01303 GDEase Guanine deaminase (GDEase)

Probab=99.98  E-value=7.4e-30  Score=247.67  Aligned_cols=350  Identities=18%  Similarity=0.134  Sum_probs=192.5

Q ss_pred             cceeEEEeCCEEEEeccCCCCC-CCCCCCcEEecCCCEEeccceeeccccCCCCCC---------cc--------c----
Q 013050            2 CKRAVEIKEGNIISIVSEEDWP-RNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------EW--------E----   59 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~-~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---------~~--------~----   59 (450)
                      .+++|+|+||+|++||+..+.. ...++.++||+.|++|||||||+|+|+....+.         .|        +    
T Consensus        25 ~~g~V~v~~g~I~~vG~~~~~~~~~~~~~~viD~~g~~v~PGlVn~H~Hl~~~~~rg~~~~~~l~~wl~~~~~~~e~~~~  104 (429)
T cd01303          25 EDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIHAPQYANIGSGLGEPLLDWLETYTFPEEAKFA  104 (429)
T ss_pred             CCeEEEEECCEEEEeCchhhhhhhcCCCceEEcCCCCEEecceeeeeecccccccccccCCCcHHHHHHhhhhHHHHhcC
Confidence            5789999999999999864331 112457899999999999999999998643110         01        0    


Q ss_pred             ---c----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc---CCceEEEEeccccCC--Ccc---chHH
Q 013050           60 ---G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYVDVGFWGGLVPE--NAY---NASA  124 (450)
Q Consensus        60 ---~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~---~~~~  124 (450)
                         .    ......+++++|||+++++. ...     ........+.+..   +..+.........+.  ...   ..+.
T Consensus       105 ~~~~~~~~a~~~~~e~l~~GvTtv~d~~-~~~-----~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (429)
T cd01303         105 DPAYAREVYGRFLDELLRNGTTTACYFA-TIH-----PESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRDTAESSYRD  178 (429)
T ss_pred             CHHHHHHHHHHHHHHHHhCCceEEEeec-ccC-----hhHHHHHHHHHHHhCCeEEEeeeeecCCCCcccccCHHHHHHH
Confidence               0    11223477999999999985 221     1122222222222   111111111100010  011   1112


Q ss_pred             HHHHHHc--CC-cEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcC-CcEEEecCC-hhhhhhhhhhccCcCCccccccc
Q 013050          125 LEALLNA--GV-LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK-RPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTY  199 (450)
Q Consensus       125 ~~~~~~~--g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g-~~v~~H~~~-~~~~~~~~~~~~~~~~~~~~~~~  199 (450)
                      ..++++.  +. ..+...+.+.   ....++.+.++++.+.|+++| +++.+|+.+ ...+.......+.          
T Consensus       179 ~~~~i~~~~~~~~~v~~~~~p~---~~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~----------  245 (429)
T cd01303         179 TKRLIERWHGKSGRVKPAITPR---FAPSCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPG----------  245 (429)
T ss_pred             HHHHHHHHhCcCCceEEEEecC---cCCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCC----------
Confidence            2222221  11 1233322221   123578899999999999999 999999943 2221111111000          


Q ss_pred             cCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCC
Q 013050          200 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT  279 (450)
Q Consensus       200 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~  279 (450)
                                  ....++...+..    .-+.++.+.|+...  +.+.++.+++.|+.+..  ||.....-       + 
T Consensus       246 ------------~~~p~~~l~~~G----~l~~~~~l~H~~~l--~~~~~~~l~~~g~~v~~--~P~sn~~l-------~-  297 (429)
T cd01303         246 ------------ARDYLDVYDKYG----LLTEKTVLAHCVHL--SEEEFNLLKERGASVAH--CPTSNLFL-------G-  297 (429)
T ss_pred             ------------CCCHHHHHHHCC----CCCCCcEEEeCCCC--CHHHHHHHHHcCCEEEE--Cccchhhh-------c-
Confidence                        001112222210    01446677787763  33457777777766554  66432110       0 


Q ss_pred             ceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhH-HHHHHHHHH------hcC
Q 013050          280 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYGR------KYG  352 (450)
Q Consensus       280 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~------~~g  352 (450)
                                 .....+.++++.|+.+++|||+.+.+... +               .+.. +...+....      ..+
T Consensus       298 -----------~g~~~~~~~~~~Gv~v~lGtD~~~~~~~d-~---------------~~~~~~~~~~~~~~~~~~~~~~~  350 (429)
T cd01303         298 -----------SGLFDVRKLLDAGIKVGLGTDVGGGTSFS-M---------------LDTLRQAYKVSRLLGYELGGHAK  350 (429)
T ss_pred             -----------cCCCCHHHHHHCCCeEEEeccCCCCCCcc-H---------------HHHHHHHHHHHHhhccccCCcCC
Confidence                       01123457788999999999975332111 0               1111 111111111      235


Q ss_pred             CCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceee-CCCCCccc-CCCCccccCCceEe---eEEEEEE
Q 013050          353 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFEL-DNDHPVHM-KHPSISAYLGRRLS---GKVLATI  426 (450)
Q Consensus       353 ls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~---~~v~~v~  426 (450)
                      ++++++++|+|.|||+++|+ +++|+|++||+||||++|.+++... +..   .+ ... ..|+...++.   .+|+.||
T Consensus       351 ~~~~~al~~aT~~gA~~lg~~~~~Gsle~Gk~ADlvvld~~~~~~~~p~~---~~~~~~-~d~~~~lV~~~~~~~V~~v~  426 (429)
T cd01303         351 LSPAEAFYLATLGGAEALGLDDKIGNFEVGKEFDAVVIDPSATPLLADRM---FRVESL-EEALFKFLYLGDDRNIREVY  426 (429)
T ss_pred             CCHHHHHHHHhhHHHHHcCCCCCCcCcCCCCccCEEEEcCCCcccccccc---ccccch-hhHHHHHeeeCCCCCeeEEE
Confidence            89999999999999999999 6789999999999999998865322 110   00 000 2244434443   4699999


Q ss_pred             ECC
Q 013050          427 SRG  429 (450)
Q Consensus       427 v~G  429 (450)
                      |+|
T Consensus       427 V~G  429 (429)
T cd01303         427 VAG  429 (429)
T ss_pred             eCC
Confidence            998

Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.

>PRK10657 isoaspartyl dipeptidase; Provisional

Probab=99.98  E-value=4.8e-29  Score=240.42  Aligned_cols=344  Identities=22%  Similarity=0.288  Sum_probs=202.4

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCC---CcccchHHHHHHHHhCCceEEEeC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR---TEWEGFPSGTKAAAAGGITTLIDM   79 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~---~~~~~~~~~~~~~~~~GvT~~~~~   79 (450)
                      .++|+|+||+|++|++..+.+......++||++|++|+|||||+|+|+.....   ....++....+.++.+|+||++++
T Consensus        18 ~~~i~i~~g~I~~v~~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~t~~~~~~~~~~~GvTTvvd~   97 (388)
T PRK10657         18 KKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQHVHIIGGGGEGGFSTRTPEVQLSDLTEAGITTVVGL   97 (388)
T ss_pred             ceEEEEECCEEEEecCCccccccCCCCeEEECCCCEEcccceeeeeCcccCCCCcccccCCHHHHHHHHHhCCceEEECC
Confidence            47999999999999875432211235689999999999999999999863211   111245567789999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCceEEE-Eecccc-CC---CccchHHHHHHHHcCCcEE-EEecccCCCCCCCCCCH
Q 013050           80 PLNSDPSTISTETLKLKVDAAEKRIYVDVG-FWGGLV-PE---NAYNASALEALLNAGVLGL-KSFMCPSGINDFPMTNA  153 (450)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~---~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~  153 (450)
                      + +..+.......+....+.+.. ..++.. ..+... +.   .....+.+. +. ..+.++ +.....   ......+.
T Consensus        98 ~-~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~g~g~~~~~~---~~~~~~~~  170 (388)
T PRK10657         98 L-GTDGITRSMESLLAKARALEE-EGISAYMYTGSYHVPVRTITGSIRKDIV-LI-DKVIGVGEIAISD---HRSSQPTV  170 (388)
T ss_pred             C-CCCCCCCCHHHHHHHHHHHHh-hCCEEEEEecCCCCCchhhhcchhhcee-hh-hhhhCcceeeecc---CCCCCCCH
Confidence            7 554444444444443333322 123322 222111 11   000011110 00 011111 111110   01113466


Q ss_pred             HHHHHHHHHHHhcCC------cEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCC
Q 013050          154 SHIKEGLSVLARYKR------PLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP  227 (450)
Q Consensus       154 ~~l~~~~~~a~~~g~------~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~  227 (450)
                      +++.++.+.++..+.      ++.+|.....                               ..++.+.+++++.     
T Consensus       171 ~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~-------------------------------~~l~~v~~~l~~~-----  214 (388)
T PRK10657        171 EELARLAAEARVGGLLSGKAGIVHVHMGDGK-------------------------------KGLQPLFELLENT-----  214 (388)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCEEEEEeCCch-------------------------------HHHHHHHHHHHhc-----
Confidence            777777776665444      6888873211                               1233332333222     


Q ss_pred             CCCce---EEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCCh---hhHHHHHHHHh
Q 013050          228 AEGAH---LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA---ANKEKLWEALM  301 (450)
Q Consensus       228 ~~~~~---~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~  301 (450)
                        |..   +...|+.......+...++.++|..+....                    ..|+++..   .....++++++
T Consensus       215 --Gv~~~~~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~--------------------~~~~~~~~~~~~~~~~l~~~~~  272 (388)
T PRK10657        215 --DIPISQFLPTHVNRNEPLFEQALEFAKKGGVIDLTT--------------------SDPDFLGEGEVAPAEALKRALE  272 (388)
T ss_pred             --CCCcceeeCcccCCCHHHHHHHHHHHHcCCeEEEec--------------------CCCcccccCccCHHHHHHHHHH
Confidence              322   344555432133344445445554332221                    11222111   34577899999


Q ss_pred             cCC---eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCcc
Q 013050          302 DGH---IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAI  378 (450)
Q Consensus       302 ~g~---~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I  378 (450)
                      +|.   .++++||+....+...  ..+.+  .+.|..+....+..+.......++|++++++++|.|||+++|+...|+|
T Consensus       273 ~G~~~d~v~l~tD~~~~~~~~~--~~g~~--~~~g~~~~~~l~~~~~~~~~~~gis~~~~l~~aT~npA~~lg~~~~G~l  348 (388)
T PRK10657        273 AGVPLSRVTLSSDGNGSLPKFD--EDGNL--VGLGVGSVESLLEEVRELVKDEGLPLEDALKPLTSNVARFLKLNGKGEI  348 (388)
T ss_pred             cCCChhheEEECCCCCCCceec--cCCCE--eccCcCchhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCcc
Confidence            998   6799999754432211  11111  2335566666666666556688999999999999999999999438999


Q ss_pred             ccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCC
Q 013050          379 AIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA  442 (450)
Q Consensus       379 ~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~  442 (450)
                      ++|+.|||+++| +.                          .+|..||++|++|+++|+++.+.
T Consensus       349 ~~G~~AD~vv~~-~~--------------------------~~~~~~~~~G~~v~~~~~~~~~~  385 (388)
T PRK10657        349 LPGKDADLLVLD-DD--------------------------LRIEQVIAKGKLMVKDGKALVKG  385 (388)
T ss_pred             CCCCccCEEEEC-CC--------------------------CCEEEEEECCEEEEECCEEeccc
Confidence            999999999999 31                          16889999999999999998764

>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases

Probab=99.97  E-value=9.3e-30  Score=247.14  Aligned_cols=345  Identities=17%  Similarity=0.145  Sum_probs=197.8

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC-------ccc---------------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-------EWE---------------   59 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~-------~~~---------------   59 (450)
                      ..++|+|+||+|++|++..+.+   ++.++||++|++|+|||||+|+|+......       .+.               
T Consensus        13 ~~~~v~I~~g~I~~Vg~~~~~~---~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (398)
T cd01293          13 ALVDIAIEDGRIAAIGPALAVP---PDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNNSGGTLLEAIIAWEERKLLL   89 (398)
T ss_pred             eEEEEEEECCEEEEEecCCCCC---CCCceEeCCCCEEccCEeeeeeccCcccccCCCCCCCccccHHHHHHHHHHHhcc
Confidence            3578999999999999875432   467899999999999999999999642100       000               


Q ss_pred             ---c----hHHHHHHHHhCCceEEEeCCCCCCCC--CCcHHHHHHHHHHHhcCCceEEEEecccc-CCCccchHHHHHHH
Q 013050           60 ---G----FPSGTKAAAAGGITTLIDMPLNSDPS--TISTETLKLKVDAAEKRIYVDVGFWGGLV-PENAYNASALEALL  129 (450)
Q Consensus        60 ---~----~~~~~~~~~~~GvT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  129 (450)
                         +    ......+++++|||+++++. ...+.  ....+......+................. .......+.+++..
T Consensus        90 t~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  168 (398)
T cd01293          90 TAEDVKERAERALELAIAHGTTAIRTHV-DVDPAAGLKALEALLELREEWADLIDLQIVAFPQHGLLSTPGGEELMREAL  168 (398)
T ss_pred             ChHHHHHHHHHHHHHHHHcChhheeeee-cccccccchHHHHHHHHHHHhhccceEEEEeccCccccCCCCHHHHHHHHH
Confidence               0    12234578999999998874 22221  11122222222222222111111111000 01123345666666


Q ss_pred             HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHH
Q 013050          130 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE  209 (450)
Q Consensus       130 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  209 (450)
                      +.|..-+..+ .+.   ....++.+.++++++.|+++|+++.+|+.+...                        +   ..
T Consensus       169 ~~g~~~~~~~-~~~---~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~------------------------~---~~  217 (398)
T cd01293         169 KMGADVVGGI-PPA---EIDEDGEESLDTLFELAQEHGLDIDLHLDETDD------------------------P---GS  217 (398)
T ss_pred             HhCCCEEeCC-CCC---cCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCC------------------------c---ch
Confidence            6665322211 111   113567899999999999999999999954321                        0   01


Q ss_pred             HHHHHHHHHHHhhccCCCCCCceEEEEecCCh-----hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEc
Q 013050          210 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCA  284 (450)
Q Consensus       210 ~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (450)
                      ..+...++.+.+...     ..++.+.|+...     .+..+.++.+++.|+.+..  ||...........       ..
T Consensus       218 ~~~~~~~~~~~~~g~-----~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~--~p~s~~~l~~~~~-------~~  283 (398)
T cd01293         218 RTLEELAEEAERRGM-----QGRVTCSHATALGSLPEAEVSRLADLLAEAGISVVS--LPPINLYLQGRED-------TT  283 (398)
T ss_pred             hHHHHHHHHHHHhCC-----CCCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEEe--CCCcchhhccccc-------CC
Confidence            122334444444310     124667777642     1224678888888876665  5543211100000       00


Q ss_pred             CCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCC----CHHHHHH
Q 013050          285 PPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV----TLEQLAS  360 (450)
Q Consensus       285 ~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gl----s~~~al~  360 (450)
                      +   .......+.++++.|+.+++|||+... +..           +.+..   ..+..+.......++    +.+++|+
T Consensus       284 ~---~~~~~~~~~~~~~~Gv~v~lGTD~~~~-~~~-----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~al~  345 (398)
T cd01293         284 P---KRRGVTPVKELRAAGVNVALGSDNVRD-PWY-----------PFGSG---DMLEVANLAAHIAQLGTPEDLALALD  345 (398)
T ss_pred             C---CCCCCCcHHHHHHCCCeEEECCCCCCC-CCc-----------CCCCC---CHHHHHHHHHHHHcCCChhhHHHHHH
Confidence            0   011233467788999999999996420 000           00000   011111111122344    3478999


Q ss_pred             HHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEE
Q 013050          361 WWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV  432 (450)
Q Consensus       361 ~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v  432 (450)
                      ++|.|||+++|+ +.|+|+|||+||||++|.+++.++.      ..            ..++..||++|+++
T Consensus       346 ~aT~~~A~~lg~-~~G~l~~Gk~ADlv~~d~~~~~~~~------~~------------~~~~~~v~~~G~~~  398 (398)
T cd01293         346 LITGNAARALGL-EDYGIKVGCPADLVLLDAEDVAEAV------AR------------QPPRRVVIRKGRVV  398 (398)
T ss_pred             hcChhhhhhcCC-cCcccccCCcceEEEECCCCHHHHH------hc------------CCCccEEEECCEEC
Confidence            999999999999 6899999999999999988643221      00            13788999999875

Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.

>PRK06038 N-ethylammeline chlorohydrolase; Provisional

Probab=99.97  E-value=8.9e-30  Score=247.40  Aligned_cols=346  Identities=15%  Similarity=0.117  Sum_probs=197.7

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC---------cc--------------c
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------EW--------------E   59 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---------~~--------------~   59 (450)
                      +++|+|++|+|.+|++....    +..++||+.|++|+|||||+|+|+....+.         .|              +
T Consensus        21 ~~~v~v~~g~I~~i~~~~~~----~~~~~id~~g~~v~PG~vd~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   96 (430)
T PRK06038         21 KGSVVIEDGTITEVSESTPG----DADTVIDAKGSVVMPGLVNTHTHAAMTLFRGYADDLPLAEWLNDHIWPAEAKLTAE   96 (430)
T ss_pred             ccEEEEECCEEEEecCCCCC----CCCEEEeCCCCEEecCeeecccCcchhhhhhccCCCCHHHHHHhhhhhchhcCCHH
Confidence            46899999999999986322    345799999999999999999999643110         00              0


Q ss_pred             ch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEE-eccccCCC-c---cchHHHHHHHH
Q 013050           60 GF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF-WGGLVPEN-A---YNASALEALLN  130 (450)
Q Consensus        60 ~~----~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~  130 (450)
                      ..    .....+++.+|+|+++|+. .      ....+.   +..... .++... ++...... .   ..++...++++
T Consensus        97 ~~~~~a~~~~~e~l~~G~Ttv~D~~-~------~~~~~~---~a~~~~-GiR~~~~~~~~d~~~~~~~~~~l~~~~~~i~  165 (430)
T PRK06038         97 DVYAGSLLACLEMIKSGTTSFADMY-F------YMDEVA---KAVEES-GLRAALSYGMIDLGDDEKGEAELKEGKRFVK  165 (430)
T ss_pred             HHHHHHHHHHHHHHhcCceeEEccc-c------CHHHHH---HHHHHh-CCeEEEEchhccCCCccchHHHHHHHHHHHH
Confidence            00    1124477899999999985 1      111111   222111 222211 11111111 1   11222223322


Q ss_pred             c--C--CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhh-ccCcCCccccccccCCCCh
Q 013050          131 A--G--VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKL-EDDTLDTRSYSTYLKTRPP  205 (450)
Q Consensus       131 ~--g--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~  205 (450)
                      .  +  ...+...+.+.   ....++++.+.++++.|+++|+++.+|+.+.......+.. .+                 
T Consensus       166 ~~~~~~~g~v~~~~~~~---~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G-----------------  225 (430)
T PRK06038        166 EWHGAADGRIKVMYGPH---APYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYG-----------------  225 (430)
T ss_pred             HhcCCCCCceEEEEeCC---cCccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhC-----------------
Confidence            1  1  11233322222   2236788999999999999999999999554321111110 00                 


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcC
Q 013050          206 SWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAP  285 (450)
Q Consensus       206 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (450)
                             ...++...+..    ..+.++.+.|+...  +.+.++.+++.|+.+..  ||......               
T Consensus       226 -------~~~i~~l~~~g----~l~~r~~~~H~~~l--~~~~~~~la~~g~~v~~--~P~~n~~~---------------  275 (430)
T PRK06038        226 -------MCSVNYLDDIG----FLGPDVLAAHCVWL--SDGDIEILRERGVNVSH--NPVSNMKL---------------  275 (430)
T ss_pred             -------CCHHHHHHHcC----CCCCCeEEEEEecC--CHHHHHHHHhcCCEEEE--ChHHhhhh---------------
Confidence                   00111122210    01344555565542  22347777777876554  66532210               


Q ss_pred             CCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhH-HHHHHHHH---HhcCCCHHHHHHH
Q 013050          286 PIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYG---RKYGVTLEQLASW  361 (450)
Q Consensus       286 ~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~---~~~gls~~~al~~  361 (450)
                          ......+.++++.|+.+++|||+.+.+...+++               ..+ ........   ...+++++++++|
T Consensus       276 ----~~~~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~---------------~~~~~a~~~~~~~~~~~~~~~~~~al~~  336 (430)
T PRK06038        276 ----ASGIAPVPKLLERGVNVSLGTDGCASNNNLDMF---------------EEMKTAALLHKVNTMDPTALPARQVLEM  336 (430)
T ss_pred             ----ccCCCCHHHHHHCCCeEEEeCCCCccCCCcCHH---------------HHHHHHHHHhhhccCCCCcCCHHHHHHH
Confidence                001123557788999999999965332111111               111 11111111   1246899999999


Q ss_pred             HhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECCeEEEecCcc
Q 013050          362 WSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKEGNH  438 (450)
Q Consensus       362 aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~v~~~g~~  438 (450)
                      +|.|||+++|++ .|+|++||.||||++|.+.+...+..          .|+...++   ..+|..|||+|+++|++|++
T Consensus       337 aT~~gA~~lg~~-~G~l~~G~~ADlvvld~~~~~~~p~~----------~~~~~~v~~~~~~~v~~v~v~G~~v~~~g~~  405 (430)
T PRK06038        337 ATVNGAKALGIN-TGMLKEGYLADIIIVDMNKPHLTPVR----------DVPSHLVYSASGSDVDTTIVDGRILMEDYKV  405 (430)
T ss_pred             HhHHHHHHhCCC-CCccCCCcccCEEEEeCCCCccCCCC----------ChHHheeEeCCCCceeEEEECCEEEEECCeE
Confidence            999999999995 69999999999999998854322111          12221222   23799999999999999999


Q ss_pred             cCCCC
Q 013050          439 APAAC  443 (450)
Q Consensus       439 ~~~~~  443 (450)
                      +..++
T Consensus       406 ~~~d~  410 (430)
T PRK06038        406 LCMDE  410 (430)
T ss_pred             CCCCH
Confidence            86543

>PRK13207 ureC urease subunit alpha; Reviewed

Probab=99.97  E-value=4.8e-29  Score=240.10  Aligned_cols=340  Identities=22%  Similarity=0.275  Sum_probs=208.8

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCC-------CCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCce
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRN-------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGIT   74 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~-------~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT   74 (450)
                      .+++|+|+||||++|++...+...       ..+.++||++|++|+|||||+|+|+..++.         .+.++++|||
T Consensus        83 ~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~P~~---------~~aALagGVT  153 (568)
T PRK13207         83 VKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFICPQQ---------IEEALASGVT  153 (568)
T ss_pred             EEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCccccH---------HHHHHcCCCC
Confidence            468999999999999975322100       135789999999999999999999876541         4788999999


Q ss_pred             EEEeCCCCC----CCCC--CcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCC
Q 013050           75 TLIDMPLNS----DPST--ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDF  148 (450)
Q Consensus        75 ~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  148 (450)
                      |+++++.+.    .+..  .....+....+..+ ...+++.+++.   ......+.+.++++.|+.++|.+..+      
T Consensus       154 TVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~-~~pin~g~~g~---g~~~~~~~L~e~i~aGA~gfKi~~d~------  223 (568)
T PRK13207        154 TMIGGGTGPATGTNATTCTPGPWHIHRMLQAAD-AFPMNIGFLGK---GNASLPEALEEQIEAGAIGLKLHEDW------  223 (568)
T ss_pred             EEEcCCcCCccCCcccccccchHHHHHHHHHhh-cCCceEEEEcC---CCcccHHHHHHHHHcCCCEEeecCCC------
Confidence            999984211    1111  11233444444433 34577777652   22345678888999999999987533      


Q ss_pred             CCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCC
Q 013050          149 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA  228 (450)
Q Consensus       149 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~  228 (450)
                       ..+++.+.++++.|+++|++|.+|++..+.                             ...++..++...        
T Consensus       224 -g~t~~~l~~aL~~A~~~gv~V~iHa~tlne-----------------------------~G~~e~t~~a~~--------  265 (568)
T PRK13207        224 -GATPAAIDNCLSVADEYDVQVAIHTDTLNE-----------------------------SGFVEDTIAAFK--------  265 (568)
T ss_pred             -CCCHHHHHHHHHHHHHhCCEEEEeCCCccc-----------------------------chHHHHHHHhcC--------
Confidence             357899999999999999999999965432                             111233333333        


Q ss_pred             CCceEEEEecCCh--hHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCCh------hhH-HH
Q 013050          229 EGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDA------ANK-EK  295 (450)
Q Consensus       229 ~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~-~~  295 (450)
                       +..+|..|....  ....+.++.+...++-.+ +.+| ..-++.+.+..    .-.+.+.++.+.+-      +-+ +-
T Consensus       266 -g~~iH~~H~egaggghapdii~~~~~~~v~p~-st~p-t~p~~~~~~~e~~~m~m~~h~l~~~~~~d~~~a~srir~~t  342 (568)
T PRK13207        266 -GRTIHTFHTEGAGGGHAPDIIKVAGEPNVLPS-STNP-TRPYTVNTIDEHLDMLMVCHHLDPSIPEDVAFAESRIRRET  342 (568)
T ss_pred             -CCEEEEEeecCCCcCCchHHHHHhhcCCCccC-CCCC-CCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhcccee
Confidence             788999997632  144566666666553221 1122 22222222211    12233344433211      000 00


Q ss_pred             H---HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCC-------CHHHH---HHHH
Q 013050          296 L---WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-------TLEQL---ASWW  362 (450)
Q Consensus       296 l---~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gl-------s~~~a---l~~a  362 (450)
                      +   .-+++.|+..+++||+.....         .     |...........-.......+       +.+.+   |+++
T Consensus       343 ~~ae~~l~d~Ga~~~~~SD~p~~~~---------~-----~~~~~r~~q~A~~r~~~~G~~~~d~~~~~n~ri~~~l~~~  408 (568)
T PRK13207        343 IAAEDILHDLGAISMISSDSQAMGR---------V-----GEVIIRTWQTAHKMKVQRGPLPGDSGRNDNFRVKRYIAKY  408 (568)
T ss_pred             ecccchhhhCCCEEEecCCcccccc---------c-----ccchhHHHHHHHHHHHccCCCCcccccCccchHHHHHHHH
Confidence            0   124667999999999753211         0     000000000000000000111       11222   9999


Q ss_pred             hhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec-Cccc
Q 013050          363 SERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE-GNHA  439 (450)
Q Consensus       363 T~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~-g~~~  439 (450)
                      |.|||+++|+ +.+|+|++||.||||||+.+.          +.              .++..||++|+++|.. |.+.
T Consensus       409 T~npA~alG~~~~vGsIe~Gk~ADlVvld~d~----------f~--------------~~~~~ti~~G~iv~~~~gd~~  463 (568)
T PRK13207        409 TINPAIAHGISHEVGSVEVGKLADLVLWKPAF----------FG--------------VKPELVLKGGMIAWAPMGDPN  463 (568)
T ss_pred             hHHHHHHcCCCcCccccCCCCcCCEEEECchh----------cC--------------CCceEEEECCEEEEecCCCcc
Confidence            9999999999 779999999999999999542          00              2567999999999997 6655

>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid

Probab=99.97  E-value=6.6e-29  Score=239.25  Aligned_cols=343  Identities=18%  Similarity=0.223  Sum_probs=203.1

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC---cccchHHHHHHHHhCCceEEEe
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---EWEGFPSGTKAAAAGGITTLID   78 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---~~~~~~~~~~~~~~~GvT~~~~   78 (450)
                      .+++|+|++|+|++|++..+.+. ..+.++||++|++|+|||||+|+|+...+..   ...+......+++.+|+||+++
T Consensus        16 ~~~~v~i~~g~I~~v~~~~~~~~-~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~d   94 (387)
T cd01308          16 GKKDILIAGGKILAIEDQLNLPG-YENVTVVDLHGKILVPGFIDQHVHIIGGGGEGGPSTRTPEVTLSDLTTAGVTTVVG   94 (387)
T ss_pred             cceEEEEECCEEEEEeCCccccc-CCCCeEEECCCCEEccCeeehhhCcccccCCCcccccCHHHHHHHHHhCCceEEec
Confidence            35789999999999998654321 2356899999999999999999998653111   1122334556889999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCc---c----chHHHHHHHHcCCcEEEEecccCCCCCCCCC
Q 013050           79 MPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA---Y----NASALEALLNAGVLGLKSFMCPSGINDFPMT  151 (450)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  151 (450)
                      ++ +..+.....+.+....+.+.......+...+.......   +    .+..++.+...|..+.+.   +    .....
T Consensus        95 ~~-~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~---~----~~~~~  166 (387)
T cd01308          95 CL-GTDGISRSMEDLLAKARALEEEGITCFVYTGSYEVPTRTITGSIRKDLLLIDKVIGVGEIAISD---H----RSSQP  166 (387)
T ss_pred             Cc-CCCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCcCchhhHHHHHHHHHHhcCcceEEEcC---C----CCCCC
Confidence            86 44444444555544444443332222222221111101   1    111122211112222221   1    11235


Q ss_pred             CHHHHHHHHHHHHhcCC----c--EEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccC
Q 013050          152 NASHIKEGLSVLARYKR----P--LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTD  225 (450)
Q Consensus       152 ~~~~l~~~~~~a~~~g~----~--v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~  225 (450)
                      ...++.++...++..+.    +  +.+|....                               ...++++.++.++.   
T Consensus       167 ~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~-------------------------------~~~~~~i~~~~~~~---  212 (387)
T cd01308         167 TVEELARIAAEARVGGLLGGKAGIVHIHLGDG-------------------------------KRALSPIFELIEET---  212 (387)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCc-------------------------------hHHHHHHHHHHHhc---
Confidence            66777777777776443    3  55555211                               23467777777754   


Q ss_pred             CCCCCceE-EEEecCChhHHHH---HHHHHHhCCCcEEE--ecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHH
Q 013050          226 GPAEGAHL-HIVHLSDASSSLD---LLMEAKTNGDSITV--ETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEA  299 (450)
Q Consensus       226 ~~~~~~~~-~~~h~~~~~~~~~---~~~~~~~~g~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  299 (450)
                          |.++ ++.|.+.. ...+   ...+..+.|..+..  ..++++.               ..++.   .....++.+
T Consensus       213 ----G~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~v~i~~~~~~~~~---------------~~~~~---~~~~~l~~~  269 (387)
T cd01308         213 ----EIPITQFLPTHIN-RTAPLFEQGVEFAKMGGTIDLTSSIDPQFR---------------KEGEV---RPSEALKRL  269 (387)
T ss_pred             ----CCCcceeECCccc-CCHHHHHHHHHHHHcCCcEEEECCCCcccc---------------ccCcc---ChHHHHHHH
Confidence                6655 66555543 2222   23333344432222  2222111               11222   234666778


Q ss_pred             HhcCCe---eEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCC
Q 013050          300 LMDGHI---DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKG  376 (450)
Q Consensus       300 ~~~g~~---~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G  376 (450)
                      ++.|..   ++++||+....+..  ...+.+  ...|..+....+..+.......++|++++++++|.|||+++|++..|
T Consensus       270 ~~~g~~~d~i~l~TD~~~~~p~~--~~~g~~--~~~g~~~~~~~~~~~~~~v~~~~i~~~~al~~~T~npA~~lg~~~~G  345 (387)
T cd01308         270 LEQGVPLERITFSSDGNGSLPKF--DENGNL--VGLGVGSVDTLLREVREAVKCGDIPLEVALRVITSNVARILKLRKKG  345 (387)
T ss_pred             HHhCCCCCcEEEEECCCCCcccC--ccCCeE--EecCcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence            888752   58999974221111  111211  12355666666666654445567999999999999999999994389


Q ss_pred             ccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC
Q 013050          377 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA  441 (450)
Q Consensus       377 ~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~  441 (450)
                      +|++|++|||+|+|.+.                           ++..|+++|++|++||++..+
T Consensus       346 ~i~~G~~ADlvv~d~~~---------------------------~~~~~~~~G~~v~~~~~~~~~  383 (387)
T cd01308         346 EIQPGFDADLVILDKDL---------------------------DINSVIAKGQIMVRNGKLLVK  383 (387)
T ss_pred             CcCCCCcCCEEEEcCCC---------------------------CEEEEEECCEEEEECCeEeec
Confidence            99999999999999541                           578899999999999998754

Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.

>PRK07213 chlorohydrolase; Provisional

Probab=99.97  E-value=1.5e-29  Score=241.41  Aligned_cols=323  Identities=21%  Similarity=0.236  Sum_probs=186.8

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCC---------Ccc--------------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR---------TEW--------------   58 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~---------~~~--------------   58 (450)
                      .+++|+|++|+|.+|++..      +..+++|+.|++| |||||+|+|+.....         ..+              
T Consensus        18 ~~~~v~i~~g~I~~i~~~~------~~~~~id~~g~~v-PGlvd~H~H~~~~~~rg~~~~~~l~~~~~~~~~~~~~~~~~   90 (375)
T PRK07213         18 KKGNLVIEDGIIKGFTNEV------HEGNVIDAKGLVI-PPLINAHTHIGDSSIKDIGIGKSLDELVKPPNGLKHKFLNS   90 (375)
T ss_pred             eeeEEEEECCEEEEeccCC------CCCeEEeCCCCEe-cceeeeccccCchhhhcCCCCCCHHHHccCCCcchHHHHhc
Confidence            4578999999999998741      2568999999999 999999999965311         000              


Q ss_pred             ---cc----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC-CccchHHHHHHHH
Q 013050           59 ---EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLN  130 (450)
Q Consensus        59 ---~~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  130 (450)
                         +.    ......+++++|||+++|+. ..     ....+....+... ...++....+..... .....+.+++..+
T Consensus        91 ~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~-~~-----~~~~~~~~~~a~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  163 (375)
T PRK07213         91 CSDKELVEGMKEGLYDMYNNGIKAFCDFR-EG-----GIKGINLLKKASS-DLPIKPIILGRPTEADENELKKEIREILK  163 (375)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCeEEEEhh-hc-----ChhHHHHHHHHHH-cCCCceEEecCCCcccchhhHHHHHHHHH
Confidence               00    12234577899999999974 11     1111222222222 222232222111111 1112233333333


Q ss_pred             cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhh-hhhhhhhccCcCCccccccccCCCChHHHH
Q 013050          131 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEE  209 (450)
Q Consensus       131 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  209 (450)
                      . ..++..       .....++.+.++++++.|+++|+++.+|+.+... ........+                    .
T Consensus       164 ~-~~g~~~-------~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G--------------------~  215 (375)
T PRK07213        164 N-SDGIGL-------SGANEYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYG--------------------M  215 (375)
T ss_pred             h-cccccc-------cccccCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcC--------------------C
Confidence            1 112211       1223567899999999999999999999944321 111111100                    0


Q ss_pred             HHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCC
Q 013050          210 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD  289 (450)
Q Consensus       210 ~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (450)
                      ..++.+.++.-       .+.   .+.|+...  +.+.++.+++.|+.+..  ||......                   
T Consensus       216 ~~v~~~~~~G~-------~~~---~i~H~~~~--~~~~i~~la~~g~~v~~--~P~sn~~l-------------------  262 (375)
T PRK07213        216 TEIERLINLGF-------KPD---FIVHATHP--SNDDLELLKENNIPVVV--CPRANASF-------------------  262 (375)
T ss_pred             ChHHHHHhcCC-------CCC---EEEECCCC--CHHHHHHHHHcCCcEEE--CCcchhhh-------------------
Confidence            01222222211       002   24666542  22357777777876655  66432110                   


Q ss_pred             hhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHH
Q 013050          290 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKL  369 (450)
Q Consensus       290 ~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~  369 (450)
                      ......+.++++.|+.+++|||+.+.+.. .                   .+..+.......+++++++++|+|.|||++
T Consensus       263 ~~g~~~v~~l~~~Gv~v~lGTD~~~~~~~-~-------------------~~~e~~~~~~~~~~~~~~~l~~aT~~gA~~  322 (375)
T PRK07213        263 NVGLPPLNEMLEKGILLGIGTDNFMANSP-S-------------------IFREMEFIYKLYHIEPKEILKMATINGAKI  322 (375)
T ss_pred             ccCCccHHHHHHCCCEEEEeeCCCCCchH-h-------------------HHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence            01122356778899999999997543211 1                   111111122345799999999999999999


Q ss_pred             hCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECCeE
Q 013050          370 AGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNL  431 (450)
Q Consensus       370 lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~  431 (450)
                      ||+++.|+|++||+||||++|.+.+.  +         . ++|+...++   ..+|..||||||+
T Consensus       323 lg~~~~G~l~~G~~ADlvv~d~~~~~--p---------~-~dp~~~lV~~~~~~~v~~v~v~G~~  375 (375)
T PRK07213        323 LGLINVGLIEEGFKADFTFIKPTNIK--F---------S-KNPYASIITRCESGDIVNKILKGKL  375 (375)
T ss_pred             hCCCCcCCcCCCCcccEEEEcCcccc--c---------c-CCchHHHhhhccCCCceEEEECCcC
Confidence            99955999999999999999975311  1         1 334444443   2479999999984

>TIGR01178 ade adenine deaminase

Probab=99.97  E-value=6.5e-29  Score=244.23  Aligned_cols=309  Identities=21%  Similarity=0.212  Sum_probs=204.9

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      +.++|+|++|+|++|++..       +.+++|++|++|+|||||+|+|+..+....    ....+.++.+||||++++| 
T Consensus        18 ~~~dI~I~~g~I~~ig~~~-------~~~viDa~G~~v~PG~ID~H~Hi~~~~~~~----~~~~~~al~~GvTtvv~~P-   85 (552)
T TIGR01178        18 IPGDIAIANGHIAGVGKYN-------GVKVIDALGEYAVPGFIDAHIHIESSMLTP----SEFAKLVLPHGVTTVVSDP-   85 (552)
T ss_pred             EeeeEEEECCEEEEecCCC-------CCeEEECCCCEEEeCeEecccccCCCCCCh----hHHHHHHHCCCEEEEEcCC-
Confidence            3568999999999998641       458999999999999999999998765432    2234567999999999998 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc-C-----CCcc--chHHHHHHHH-cCCcEEEEecccCCCCCCCCCC
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-P-----ENAY--NASALEALLN-AGVLGLKSFMCPSGINDFPMTN  152 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~--~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~  152 (450)
                      +..+.....+.+....+.+. ..++++....... +     .+..  ..+++.++.+ .|+.+++.++.+++.    ...
T Consensus        86 ~~~~~v~g~~~~~~~~~~a~-~~~~d~~~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~~~V~glke~m~~~~v----~~~  160 (552)
T TIGR01178        86 HEIANVNGEDGINFMLNNAK-KTPLNFYFMLPSCVPALQFETSGAVLTAEDIDELMELDEVLGLAEVMDYPGV----INA  160 (552)
T ss_pred             CCCCCCCCHHHHHHHHHHhh-cCCcEEEEECCCCCCCCcccCCCCccCHHHHHHHHcCCCccEEEEEecchhh----cCC
Confidence            66666677888887777665 5577765443311 1     1112  3677888886 599999999977542    234


Q ss_pred             HHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCce
Q 013050          153 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH  232 (450)
Q Consensus       153 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~  232 (450)
                      .+.+.+.++.+++.|+.+..|++....                                 ..+..+...        |..
T Consensus       161 d~~~l~~i~~a~~~g~~I~gHap~l~~---------------------------------~eL~~~~~a--------Gi~  199 (552)
T TIGR01178       161 DIEMLNKINSARKRNKVIDGHCPGLSG---------------------------------KLLNKYISA--------GIS  199 (552)
T ss_pred             CHHHHHHHHHHHhCCCEEEecCCCCCH---------------------------------HHHHHHHHc--------CCC
Confidence            555666668999999999999953221                                 112222221        322


Q ss_pred             EEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHH--hcCCeeEEcC
Q 013050          233 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEAL--MDGHIDMLSS  310 (450)
Q Consensus       233 ~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~~~gt  310 (450)
                        ..|..   .+.+...+..++|..+..  ....                      ...+...+..++  ..+..++++|
T Consensus       200 --~dHe~---~s~~ea~e~~~~Gm~~~i--r~gs----------------------~~~n~~~~~~~~~~~~~~~~~l~T  250 (552)
T TIGR01178       200 --NDHES---TSIEEAREKLRLGMKLMI--REGS----------------------AAKNLEALHPLINEKNCRSLMLCT  250 (552)
T ss_pred             --CCcCc---CCHHHHHHHHHCCCEEEE--eCCc----------------------cccCHHHHHHHHhhcCCceEEEEe
Confidence              35544   344455555566654432  1100                      001111122212  2457899999


Q ss_pred             CCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEe
Q 013050          311 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWE  390 (450)
Q Consensus       311 D~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d  390 (450)
                      |...  + ..++..              ..+...++.+.+.|+++++|++|+|.|||+++|+++.|+|+||+.|||+++|
T Consensus       251 D~~~--~-~~~~~~--------------g~l~~~v~~ai~~g~~~~~Al~maT~npA~~lgl~~~G~I~pG~~ADlvvl~  313 (552)
T TIGR01178       251 DDRH--V-NDILNE--------------GHINHIVRRAIEHGVDPFDALQMASINPAEHFGIDVGGLIAPGDPADFVILK  313 (552)
T ss_pred             CCCC--h-hHHHhc--------------CCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCcccCCCCcCCEEEEC
Confidence            9421  1 111110              1133444555567999999999999999999999658999999999999999


Q ss_pred             CCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec-----Cccc
Q 013050          391 PEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE-----GNHA  439 (450)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~-----g~~~  439 (450)
                      ...                         ..++..||++|++|.++     |+.+
T Consensus       314 ~l~-------------------------~~~v~~v~~~G~~v~~~~~~~~g~~~  342 (552)
T TIGR01178       314 DLR-------------------------NFKVNKTYVKGKLLDLNEVFNDEISR  342 (552)
T ss_pred             CCC-------------------------CceEEEEEECCEEEcccccccCCccc
Confidence            311                         02788999999999998     7743

The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.

>PRK09229 N-formimino-L-glutamate deiminase; Validated

Probab=99.97  E-value=2e-29  Score=246.83  Aligned_cols=348  Identities=17%  Similarity=0.146  Sum_probs=191.1

Q ss_pred             cceeEEEeC-CEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC--------------CCcccc------
Q 013050            2 CKRAVEIKE-GNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG--------------RTEWEG------   60 (450)
Q Consensus         2 ~~~~V~I~~-g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~--------------~~~~~~------   60 (450)
                      .+++|+|+| |+|++|++....    +.   .+..|++|||||||+|+|+....              +..|-.      
T Consensus        18 ~~~~v~i~~~grI~~vg~~~~~----~~---~~~~g~~vlPGlVn~H~H~~~~~~rg~~~~~~~~~~~l~~w~~~~~~~~   90 (456)
T PRK09229         18 RNVRLTVDADGRIAAVEPGAAP----AG---AERLAGPVLPGMPNLHSHAFQRAMAGLTEVRGPPQDSFWSWRELMYRFA   90 (456)
T ss_pred             cCcEEEEecCCeEEEecCCCCC----cc---ccccCcEEccCcccccccHhhHhhcCcccccCCCCCChHHHHHHHHHHH
Confidence            467999999 999999985421    12   34589999999999999985220              001100      


Q ss_pred             -------h----HHHHHHHHhCCceEEEeCCCCCCC------CCCcHHHHHHHHHHHhcCCceEEE----Ee--ccc---
Q 013050           61 -------F----PSGTKAAAAGGITTLIDMPLNSDP------STISTETLKLKVDAAEKRIYVDVG----FW--GGL---  114 (450)
Q Consensus        61 -------~----~~~~~~~~~~GvT~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~---  114 (450)
                             .    .....+++.+|||++.++. ...+      ............+.... ..++..    .+  ...   
T Consensus        91 ~~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~-~~~~~~~~~~~~~~~~~~~a~~~a~~e-~GiR~~~~~~~~~~~~~~~~  168 (456)
T PRK09229         91 LRLTPDQLEAIARQLYVEMLEAGYTSVGEFH-YLHHDPDGTPYADPAEMALRIVAAARA-AGIGLTLLPVLYAHSGFGGQ  168 (456)
T ss_pred             HhCCHHHHHHHHHHHHHHHHhhCCcEEEeee-eeccCCCCCccCChHHHHHHHHHHHHH-cCCEEEeceeeeecCCCCCC
Confidence                   0    1123477899999999874 1111      11112222333333322 122211    11  100   


Q ss_pred             cCCC------c--c-chHHHHHHHH--cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC-hhhhhh
Q 013050          115 VPEN------A--Y-NASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM-EKGSER  182 (450)
Q Consensus       115 ~~~~------~--~-~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~~  182 (450)
                      ....      .  + ..+..+++.+  .+...+...+++.   ....++++.++++++.| ++|+++.+|+.+ ...+..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~s~e~l~~~~~~A-~~g~~i~~H~~e~~~e~~~  244 (456)
T PRK09229        169 PPNPGQRRFINDPDGFLRLLEALRRALAALPGARLGLAPH---SLRAVTPDQLAAVLALA-APDGPVHIHIAEQTKEVDD  244 (456)
T ss_pred             CCchhhcccccCHHHHHHHHHHHHHhhcCCCceEEEEeCC---CCCCCCHHHHHHHHHHh-cCCCceEEEeCCCHHHHHH
Confidence            0000      0  0 1112222322  1112233333332   22367899999999999 999999999943 222222


Q ss_pred             hhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEec
Q 013050          183 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET  262 (450)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~  262 (450)
                      +....+             ..       .++.+.+..        .-+.++.+.|+...  +.+.++.+++.|+.+..  
T Consensus       245 ~~~~~g-------------~~-------~~~~l~~~g--------~l~~~~~l~H~~~l--~~~d~~~la~~g~~v~~--  292 (456)
T PRK09229        245 CLAWSG-------------AR-------PVEWLLDHA--------PVDARWCLVHATHL--TDAETARLARSGAVAGL--  292 (456)
T ss_pred             HHHHcC-------------CC-------HHHHHHHcC--------CCCCCeEEEeeccC--CHHHHHHHHHcCCeEEE--
Confidence            221111             00       011111111        11455666777652  33456666777765554  


Q ss_pred             CcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC-ChhhhcccCCCccccCCCCcchhhHH
Q 013050          263 CPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT-VPELKLLDEGNFLKAWGGISSLQFVL  341 (450)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~  341 (450)
                      ||.....-       +            ....++.++++.|+.+++|||+... +....+                  ..
T Consensus       293 ~P~sn~~l-------g------------~g~~p~~~l~~~Gv~v~lGtD~~~~~d~~~~~------------------~~  335 (456)
T PRK09229        293 CPTTEANL-------G------------DGIFPAVDYLAAGGRFGIGSDSHVSIDLVEEL------------------RL  335 (456)
T ss_pred             Cchhhhhh-------c------------CCCCCHHHHHHCCCeEEEecCCCCCCCHHHHH------------------HH
Confidence            77532110       0            0112245678899999999996432 111111                  01


Q ss_pred             HHHHHHHH----------hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCcc
Q 013050          342 PVTWSYGR----------KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSIS  411 (450)
Q Consensus       342 ~~~~~~~~----------~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~  411 (450)
                      ....+...          +..++++++|+|+|.|||+++|+ +.|+|++||+|||||+|.+.+...+.       .. ..
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~-~~GsLe~Gk~ADlvvld~~~~~~~~~-------~~-~~  406 (456)
T PRK09229        336 LEYGQRLRDRRRNVLAAAAQPSVGRRLFDAALAGGAQALGR-AIGGLAVGARADLVVLDLDHPALAGR-------EG-DA  406 (456)
T ss_pred             HHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHHHhCC-CcCCcCCCCccCEEEEeCCCccccCC-------Ch-hh
Confidence            11111110          13568999999999999999999 69999999999999999876322110       00 11


Q ss_pred             ccCCceE---eeEEEEEEECCeEEEecCcccC
Q 013050          412 AYLGRRL---SGKVLATISRGNLVYKEGNHAP  440 (450)
Q Consensus       412 ~~~~~~~---~~~v~~v~v~G~~v~~~g~~~~  440 (450)
                      |+...++   ..+|..|||+|++||++|+++.
T Consensus       407 ~~~~lv~~~~~~~V~~v~V~G~~v~~~g~~~d  438 (456)
T PRK09229        407 LLDRWVFAGGDAAVRDVWVAGRWVVRDGRHRL  438 (456)
T ss_pred             HHHHHhhcCCCCCeeEEEECCEEEEECCccCC
Confidence            2221221   2479999999999999998764

>TIGR02022 hutF formiminoglutamate deiminase

Probab=99.97  E-value=3e-29  Score=244.77  Aligned_cols=352  Identities=16%  Similarity=0.127  Sum_probs=189.8

Q ss_pred             cceeEEEe-CCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC---CC-----------Cccc-------
Q 013050            2 CKRAVEIK-EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GR-----------TEWE-------   59 (450)
Q Consensus         2 ~~~~V~I~-~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~---~~-----------~~~~-------   59 (450)
                      ..++|+|+ ||+|++|++.....   +..   +..|++|||||||+|+|+...   +.           ..|.       
T Consensus        17 ~~~~i~I~~~g~I~~vg~~~~~~---~~~---~~~g~lvlPGfVn~H~H~~~~~~rg~~~~~~~~~~~l~~w~~~~~~~~   90 (455)
T TIGR02022        17 EGVRIAVAADGRILAIETGVPAA---PGA---ERLSGPLLPGLANLHSHAFQRAMAGLAEVAGSGGDSFWTWRELMYRFV   90 (455)
T ss_pred             cCceEEEecCCEEEEecCCCCcc---ccc---ccCCCEEccCCcccCcchhhHhhcCCcccccCCCCCHHHHHHHHHHHH
Confidence            35699999 99999999854321   122   235889999999999999542   10           0110       


Q ss_pred             ------ch----HHHHHHHHhCCceEEEeCCCCCCC------CCCcHHHHHHHHHHHhcC-CceEEE--Eecc-----cc
Q 013050           60 ------GF----PSGTKAAAAGGITTLIDMPLNSDP------STISTETLKLKVDAAEKR-IYVDVG--FWGG-----LV  115 (450)
Q Consensus        60 ------~~----~~~~~~~~~~GvT~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~-----~~  115 (450)
                            ++    .....+++++||||+.++. ...+      ............+..... ....+.  .+..     ..
T Consensus        91 ~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~~~~~~~~~~~~~~~~a~~~a~~e~G~R~~~~~~~~~~~~~~~~~  169 (455)
T TIGR02022        91 DRLTPEQLQAIARQLYVEMLEAGFTRVGEFH-YLHHAPDGTPYADPAEMAERIAAAAADAGIGLTLLPVFYAHSGFGGAA  169 (455)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHhCCCEEEeee-eecccCCCccccchhhhHHHHHHHHHHhCCeEEeeeeeeecCCCCCCC
Confidence                  01    1123377899999999973 1111      111112222333333221 111111  1110     11


Q ss_pred             CCC---------ccchHHHHHHHH--cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC-hhhhhhh
Q 013050          116 PEN---------AYNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM-EKGSERH  183 (450)
Q Consensus       116 ~~~---------~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~~~  183 (450)
                      ...         ....+.+..+.+  .+...+....++.   ....++.+.++++.+ ++++|+++.+|+.+ .......
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~s~e~l~~~~~-a~~~g~~v~~H~~e~~~e~~~~  245 (455)
T TIGR02022       170 PNPGQRRFIHDVERFARLVEVLRRELAAQPAAVLGLAPH---SLRAVTPEQLAAVLQ-ASDRQAPVHIHVAEQQKEVDDC  245 (455)
T ss_pred             CcccchhhccCHHHHHHHHHHHHHHhccCCceEEEEecC---CCCcCCHHHHHHHHH-HHhCCCceEEEECCChHHHHHH
Confidence            100         001111222222  1111233323332   223578899999998 88999999999943 2221111


Q ss_pred             hhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecC
Q 013050          184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETC  263 (450)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~  263 (450)
                      ....+              .      ..++.+.++..        -+.++.+.|+...  +.+.++.+++.|..+..  |
T Consensus       246 ~~~~G--------------~------~~v~~l~~~g~--------l~~~~~~~H~~~l--~~~d~~~la~~g~~v~~--~  293 (455)
T TIGR02022       246 LAWSG--------------R------RPVEWLLDHGP--------VDARWCLVHATHL--TDEETALLARSGAVAGL--C  293 (455)
T ss_pred             HHHhC--------------C------CHHHHHHHcCC--------CCCCEEEEEeecC--CHHHHHHHHHcCCeEEE--C
Confidence            11111              0      01122222211        1445556666542  22356666677765554  7


Q ss_pred             cchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHH
Q 013050          264 PHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPV  343 (450)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  343 (450)
                      |.....-       +            ....++.++++.|+.+++|||+.+......                 +.....
T Consensus       294 P~sn~~l-------g------------~g~~pi~~l~~~Gv~v~lGTD~~~~~d~~~-----------------~m~~a~  337 (455)
T TIGR02022       294 PTTEANL-------G------------DGIFPAVDFVAAGGRFGIGSDSHVVIDVAE-----------------ELRQLE  337 (455)
T ss_pred             hhhhccc-------c------------CCCCCHHHHHHCCCeEEEECCCCCCCCHHH-----------------HHHHHH
Confidence            7532110       0            111234567889999999999643211110                 011111


Q ss_pred             HHHHHH----------hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCcccc
Q 013050          344 TWSYGR----------KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY  413 (450)
Q Consensus       344 ~~~~~~----------~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~  413 (450)
                      ..+...          ...++++++++|+|.|||++||+ +.|+|++||+|||||+|.+.+...+..       . ..|+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gAralg~-~~GsLe~Gk~ADlvvld~~~~~~~~~~-------~-~~~~  408 (455)
T TIGR02022       338 YGQRLRDRARNVLAAGPGPSVGRALYDAALLGGAQALGL-ATGGLRAGARADFLTLDGDHPYLAGAL-------G-DSLL  408 (455)
T ss_pred             HHHHHHhcccccccCCcccchHHHHHHHHHHHHHHHhCC-CCCccCCCCCcCEEEEeCCCcccCCCC-------c-hhHH
Confidence            111111          12467889999999999999999 599999999999999998754332210       0 1111


Q ss_pred             CCceE---eeEEEEEEECCeEEEecCcccCC
Q 013050          414 LGRRL---SGKVLATISRGNLVYKEGNHAPA  441 (450)
Q Consensus       414 ~~~~~---~~~v~~v~v~G~~v~~~g~~~~~  441 (450)
                      ...++   ..+|..|||+|++||++|+++..
T Consensus       409 ~~lv~~~~~~~V~~v~V~G~~v~~~g~~~~~  439 (455)
T TIGR02022       409 DRWLFAGGGAAVRDVWVGGRWVVRDGRHALR  439 (455)
T ss_pred             HHHhhcCCCCCccEEEECCEEEEECCccccH
Confidence            11121   24799999999999999999854

In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.

>PRK09356 imidazolonepropionase; Validated

Probab=99.97  E-value=4e-29  Score=242.45  Aligned_cols=326  Identities=21%  Similarity=0.261  Sum_probs=185.5

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc-----------cc-----------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-----------WE-----------   59 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~-----------~~-----------   59 (450)
                      .+++|+|+||||++|++..+.+. ....++||+.|++|||||||+|+|+.......           +.           
T Consensus        27 ~~~~v~i~~g~I~~vg~~~~~~~-~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (406)
T PRK09356         27 EDGAIAIEDGKIVWVGPEADLPA-AYAAEVIDAGGKLVTPGLIDCHTHLVFGGNRANEFELRLQGVSYEEIAAQGGGILS  105 (406)
T ss_pred             cCcEEEEECCEEEEEeCcccccc-ccCceEEECCCCEEeeceEecCCCcccCCCcHHHHHHHHCCCcHHHHHHhcCChHH
Confidence            36789999999999998654322 12368999999999999999999997532110           00           


Q ss_pred             -----------ch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEE--Eec--cccCCC-c
Q 013050           60 -----------GF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVG--FWG--GLVPEN-A  119 (450)
Q Consensus        60 -----------~~----~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~-~  119 (450)
                                 .+    .....+++++|||++.++. ................+.......+.+.  ..+  ...... .
T Consensus       106 ~~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  184 (406)
T PRK09356        106 TVRATRAASEEELFAQALPRLDALLAEGVTTVEIKS-GYGLDLETELKMLRVARRLGEEHPVDVVTTFLGAHAVPPEYKG  184 (406)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeec-cCCCCHHHHHHHHHHHHHHhhhCCCceEeeeeecccCCccccC
Confidence                       00    1123467899999999863 1110000111111112222222212221  111  011110 0


Q ss_pred             ---cchHHH-HHHHH-----cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCc
Q 013050          120 ---YNASAL-EALLN-----AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT  190 (450)
Q Consensus       120 ---~~~~~~-~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~  190 (450)
                         ...+.. .++.+     .++..++.+...      ...+.+.++++++.|+++|+++.+|+.....           
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~-----------  247 (406)
T PRK09356        185 RPDAYIDLVCEEMLPAVAEEGLADAVDVFCET------GAFSVEQSERVLEAAKALGLPVKIHAEQLSN-----------  247 (406)
T ss_pred             CHHHHHHHHHHHHhHHHHhcCCcceEEEEecC------CCCCHHHHHHHHHHHHHCCCCEEEEEecccC-----------
Confidence               111111 11221     234444433211      2467899999999999999999999943110           


Q ss_pred             CCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccc
Q 013050          191 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS  270 (450)
Q Consensus       191 ~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~  270 (450)
                                        ...+....    ..       + ...+.|+...  +.+.++.+++.|+.+.+  ||......
T Consensus       248 ------------------~~~~~~~~----~~-------~-~~~~~H~~~~--~~~~~~~la~~g~~~~~--~P~~~~~l  293 (406)
T PRK09356        248 ------------------LGGAELAA----EY-------G-ALSADHLEYL--DEAGIAAMAEAGTVAVL--LPGAFYFL  293 (406)
T ss_pred             ------------------CCHHHHHH----Hc-------C-CcEehHhhcC--CHHHHHHHHHhCCEEEE--Cccchhhc
Confidence                              00011111    11       1 1234455442  22356666667765443  66532210


Q ss_pred             ccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCC-CChhhhcccCCCccccCCCCcchhhHHHHHHHH-H
Q 013050          271 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-G  348 (450)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~  348 (450)
                                       +. .....+.++++.|+.+++|||+.+ .++..                    .+...... .
T Consensus       294 -----------------~~-~~~~~~~~l~~~Gi~v~lgtD~~~~~~~~~--------------------~~~~~~~~~~  335 (406)
T PRK09356        294 -----------------RE-TQYPPARLLRDAGVPVALATDFNPGSSPTE--------------------SLLLAMNMAC  335 (406)
T ss_pred             -----------------Cc-ccCchHHHHHHCCCeEEEeCCCCCCCChhH--------------------HHHHHHHHHh
Confidence                             00 011234566788999999999754 21111                    12222222 2


Q ss_pred             HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEE
Q 013050          349 RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS  427 (450)
Q Consensus       349 ~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v  427 (450)
                      ...+++++++++++|.|||+++|+ +++|+|++||.|||+++|.+++..+.      ..          ....+|..||+
T Consensus       336 ~~~~l~~~~~l~~~T~~~A~~~g~~~~~G~i~~G~~AD~vvld~~~~~~~~------~~----------~~~~~v~~v~v  399 (406)
T PRK09356        336 TLFRLTPEEALAAVTINAARALGRQDTHGSLEVGKKADLVIWDAPSPAELP------YH----------FGVNPVETVVK  399 (406)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEECCCchhhhh------hh----------hCCCCccEEEE
Confidence            356899999999999999999999 67899999999999999987532111      00          01248999999


Q ss_pred             CCeEEEe
Q 013050          428 RGNLVYK  434 (450)
Q Consensus       428 ~G~~v~~  434 (450)
                      +|++||+
T Consensus       400 ~G~~vy~  406 (406)
T PRK09356        400 NGEVVVD  406 (406)
T ss_pred             CCEEeeC
Confidence            9999985

>TIGR01224 hutI imidazolonepropionase

Probab=99.97  E-value=3.9e-29  Score=240.25  Aligned_cols=324  Identities=19%  Similarity=0.166  Sum_probs=184.4

Q ss_pred             CcceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc--------------c--------
Q 013050            1 MCKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE--------------W--------   58 (450)
Q Consensus         1 ~~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~--------------~--------   58 (450)
                      +.+++|+|+||+|++|++....+. +.+.++||++|++|||||||+|+|+.......              |        
T Consensus         1 ~~~~~v~i~~g~I~~vg~~~~~~~-~~~~~~iD~~g~~v~PGlin~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (377)
T TIGR01224         1 IEDAVILIHGGKIVWIGQLAALPG-EEATEIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEMKLQGASYLEILAQGGGIL   79 (377)
T ss_pred             CCceEEEEECCEEEEEechhhCCc-ccCCeEEeCCCCEEcccEEecccCccccCCcHHHHHHHhCCCCHHHHHHhcCChH
Confidence            468999999999999998533221 23568999999999999999999997432110              0        


Q ss_pred             -----------cc----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEe-c---cccCC--
Q 013050           59 -----------EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW-G---GLVPE--  117 (450)
Q Consensus        59 -----------~~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~--  117 (450)
                                 ++    ......+++++|+|++.... ...........+....+.+..+..+.+... .   .....  
T Consensus        80 ~~~~~~~~~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~-~~g~~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~  158 (377)
T TIGR01224        80 STVRATRAASEEELLKLALFRLKSMLRSGTTTAEVKS-GYGLDLETELKMLRAAKALHEEQPVDVVTTFLGAHAVPPEFQ  158 (377)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecc-cCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCcccc
Confidence                       00    01123477899999994321 110000101122223333322222222211 0   11111  


Q ss_pred             Cc--cchH-----HHHHHHHcC-CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccC
Q 013050          118 NA--YNAS-----ALEALLNAG-VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD  189 (450)
Q Consensus       118 ~~--~~~~-----~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~  189 (450)
                      ..  +..+     .+++..+.+ +.+++.+...      ...+.+.+.++++.|+++|+++.+|+.....          
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~----------  222 (377)
T TIGR01224       159 GRPDDYVDGICEELIPQVAEEGLASFADVFCEA------GVFSVEQSRRILQAAQEAGLPVKLHAEELSN----------  222 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCCeeEEEecC------CCcCHHHHHHHHHHHHHCCCCEEEEecCCCC----------
Confidence            00  0111     122222223 5555433211      2356789999999999999999999943210          


Q ss_pred             cCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcc
Q 013050          190 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF  269 (450)
Q Consensus       190 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~  269 (450)
                                    +     ..+..+..    .       + ...+.|+..  -+.+.++.+++.|+.+..  ||.....
T Consensus       223 --------------~-----~~~~~~~~----~-------g-~~~~~H~~~--~~~~~l~~la~~g~~~~~--~P~~~~~  267 (377)
T TIGR01224       223 --------------L-----GGAELAAK----L-------G-AVSADHLEH--ASDAGIKALAEAGTVAVL--LPGTTFY  267 (377)
T ss_pred             --------------C-----CHHHHHHH----c-------C-CCccHHHhc--CCHHHHHHHHhcCCEEEE--CchHHHh
Confidence                          0     01111111    1       1 112234433  123456677777765544  7754322


Q ss_pred             cccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCC-CChhhhcccCCCccccCCCCcchhhHHHHHHHHH
Q 013050          270 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG  348 (450)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  348 (450)
                      ..                   .....+.++++.|+.+++|||+.| .++...                   .........
T Consensus       268 l~-------------------~~~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~-------------------~~~~~~~~~  309 (377)
T TIGR01224       268 LR-------------------ETYPPARQLIDYGVPVALATDLNPGSSPTLS-------------------MQLIMSLAC  309 (377)
T ss_pred             cC-------------------CcCccHHHHHHCCCCEEEECCCCCCCChhHH-------------------HHHHHHHHH
Confidence            11                   011224566789999999999754 322111                   111111123


Q ss_pred             HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEE
Q 013050          349 RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS  427 (450)
Q Consensus       349 ~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v  427 (450)
                      ...++|++++++++|.|||+++|+ ++.|+|++||.|||||+|.+++..+.      +.          ....+|..||+
T Consensus       310 ~~~~ls~~eal~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~------~~----------~~~~~v~~v~v  373 (377)
T TIGR01224       310 RLMKMTPEEALHAATVNAAYALGLGEERGTLEAGRDADLVILSAPSYAEIP------YH----------YGVNHVHAVIK  373 (377)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEEcCCChHHhh------hh----------cCCCCceEEEE
Confidence            456899999999999999999999 56899999999999999988643221      00          00137999999


Q ss_pred             CCeE
Q 013050          428 RGNL  431 (450)
Q Consensus       428 ~G~~  431 (450)
                      +|++
T Consensus       374 ~G~~  377 (377)
T TIGR01224       374 NGNI  377 (377)
T ss_pred             CCCC
Confidence            9984

This enzyme catalyzes the third step in histidine degradation.

>PRK05451 dihydroorotase; Provisional

Probab=99.97  E-value=3e-28  Score=228.42  Aligned_cols=327  Identities=18%  Similarity=0.209  Sum_probs=236.9

Q ss_pred             EEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC--ceEEEEecccc
Q 013050           38 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLV  115 (450)
Q Consensus        38 ~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  115 (450)
                      +-+|--||+|+|+... ..+ +++.++++    +++|++++++ +..|.....+.+......+....  .+++..++.+.
T Consensus         5 ~~~~~~~d~h~hl~~~-~~~-~~~~~~~~----~~~t~~v~mP-nt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i~   77 (345)
T PRK05451          5 LTIRRPDDWHLHLRDG-AML-KAVVPYTA----RQFGRAIVMP-NLVPPVTTVAQALAYRERILAALPAGSNFEPLMTLY   77 (345)
T ss_pred             EEecCcceEEEecCCc-hHH-HHHHHHHH----HhcCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEEE
Confidence            5678899999999864 221 23444443    5699999998 77777777777777777665542  35677666665


Q ss_pred             CCCccchHHHHHHHHcCC-cEEEEecccCCCC-CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCc
Q 013050          116 PENAYNASALEALLNAGV-LGLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT  193 (450)
Q Consensus       116 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~  193 (450)
                      .......+++.++.+.|+ .++|.|+.+.... .....+.+.+.++++.++++|++|.+|+++....          ...
T Consensus        78 ~~~~~~~~El~~~~~~Gvv~g~Kl~~~~~~~~~~~~~~dd~~l~~~~e~~~~~g~~V~vHaE~~~~~----------~~~  147 (345)
T PRK05451         78 LTDNTDPDELERAKASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKLGMPLLVHGEVTDPD----------IDI  147 (345)
T ss_pred             eCCCCCHHHHHHHHHCCCEEEEEEecccCccCCccCcCCHHHHHHHHHHHHHcCCEEEEecCCCCcc----------ccc
Confidence            544445788888888995 4999987542111 1112367889999999999999999999763320          000


Q ss_pred             cccccccCCCChHHHHHHHHHH-HHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccc
Q 013050          194 RSYSTYLKTRPPSWEEAAIREL-LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE  272 (450)
Q Consensus       194 ~~~~~~~~~~p~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~  272 (450)
                      .           ..+...+.+. ..++++      +++.++|+.|+++. ++++.++++   +..+++++||||+.++.+
T Consensus       148 ~-----------~~e~~~~~~~l~~lA~~------~pg~~lhI~Hlst~-~~~e~i~~a---~~~it~Et~ph~L~l~~~  206 (345)
T PRK05451        148 F-----------DREAVFIDRVLEPLRRR------FPKLKIVFEHITTK-DAVDYVREA---NDNLAATITPHHLLINRN  206 (345)
T ss_pred             c-----------cchHHHHHHHHHHHHHh------cCCCcEEEEecCcH-HHHHHHHhc---CCCEEEEecHHHHhcCHH
Confidence            0           0122234444 446643      45899999999998 888888775   558999999999999988


Q ss_pred             ccC--CCCCceEEcCCCCChhhHHHHHHHHhcCCee-EEcCCCCCCChhhhcccCCCccccCCCCcchhh---HHHHHHH
Q 013050          273 EIP--DGDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF---VLPVTWS  346 (450)
Q Consensus       273 ~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~  346 (450)
                      .+.  ..+..++++||+|...+++.||+++.+|... +++|||+|+....+..        +.|..++..   .++.+..
T Consensus       207 ~~~~~~~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~~--------~~G~~gi~~~~~g~~~~~~  278 (345)
T PRK05451        207 DMLVGGIRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKES--------ACGCAGIFSAPAALELYAE  278 (345)
T ss_pred             HHhCCCcCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhCC--------CCCCCchhhHHHHHHHHHH
Confidence            764  3467799999999999999999999999999 8999999998777632        223333333   3454444


Q ss_pred             HHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCcccc-CCceEeeEEE
Q 013050          347 YGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVL  423 (450)
Q Consensus       347 ~~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~  423 (450)
                      .+... .++++++++.+.|||++||+ +++|+|.+|          +..|++... .+.+... ++|| .|..+.++|.
T Consensus       279 ~~~~~-~~l~~~v~~~s~nPAkifGl~~~KG~i~~~----------~~~~~v~~~-~~~s~~~-~sp~~~~~~~~~~~~  344 (345)
T PRK05451        279 VFEEA-GALDKLEAFASLNGPDFYGLPRNTDTITLV----------REPWTVPES-IPFGDET-VVPFRAGETLRWSVK  344 (345)
T ss_pred             HHHcC-CCHHHHHHHHhHHHHHHhCCCCCCCeEEEE----------ecceecCcc-cccCCCc-eeeecCCceeeeEec
Confidence            44444 49999999999999999999 889999877          466888877 6777777 8888 4666666553

>PRK09237 dihydroorotase; Provisional

Probab=99.97  E-value=6.6e-28  Score=231.27  Aligned_cols=337  Identities=18%  Similarity=0.226  Sum_probs=199.6

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN   82 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~   82 (450)
                      .++|+|++|||++|++..+.+   .+.++||++|++|+|||||+|+|+.... ...+  ....+.++.+||||+++++ .
T Consensus        18 ~~~v~i~~g~I~~v~~~~~~~---~~~~~iD~~g~~v~PG~iD~H~H~~~~~-~~~~--~~~~~~~~~~G~Ttv~~~~-~   90 (380)
T PRK09237         18 VIDIAIEDGKIAAVAGDIDGS---QAKKVIDLSGLYVSPGWIDLHVHVYPGS-TPYG--DEPDEVGVRSGVTTVVDAG-S   90 (380)
T ss_pred             ceEEEEECCEEEEecCCCCCC---CCCeEEECCCCEEecCEEEeeecCCCCC-CccC--CCHHHHHHhCCcCEEEECC-C
Confidence            478999999999998764322   2568999999999999999999997543 2211  2556788999999999987 4


Q ss_pred             CCCCCCcHHHHHHHHHHH-hc--CCceEEEEeccccCCCc-----cchHHHHHHHH---cCCcEEEEecccCCCCCCCCC
Q 013050           83 SDPSTISTETLKLKVDAA-EK--RIYVDVGFWGGLVPENA-----YNASALEALLN---AGVLGLKSFMCPSGINDFPMT  151 (450)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~  151 (450)
                      ..  ....+.+....... ..  ...+++..++.......     -..+.+.++..   .++.+++.++.++...   ..
T Consensus        91 ~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~glk~~~~~~v~~---~~  165 (380)
T PRK09237         91 AG--ADNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDELADLEDIDADAVAEAVKRNPDFIVGIKARMSSSVVG---DN  165 (380)
T ss_pred             CC--CCCHHHHHHHHHhhhCcEEEEEEeeecccccccchhcCHhHCCHHHHHHHHHhCcCcEEEEEEEEeccccc---cc
Confidence            32  24455555444433 11  22333344433322111     23456666665   5799999887553211   11


Q ss_pred             CHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCc
Q 013050          152 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA  231 (450)
Q Consensus       152 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~  231 (450)
                      ..+..+.....+++.|+++.+|+++...                               ...++..+...-       ..
T Consensus       166 ~~~~~~~~~~~a~~~g~~v~~H~~~~~~-------------------------------~~~~l~~~l~~g-------~~  207 (380)
T PRK09237        166 GIEPLELAKAIAAEANLPLMVHIGNPPP-------------------------------SLEEILELLRPG-------DI  207 (380)
T ss_pred             CCchHHHHHHHHHhcCCCEEEEcCCCCC-------------------------------CHHHHHhhccCC-------CE
Confidence            1133344455566899999999965431                               012333333210       22


Q ss_pred             eEEEEecCC------hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCC-
Q 013050          232 HLHIVHLSD------ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-  304 (450)
Q Consensus       232 ~~~~~h~~~------~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-  304 (450)
                      ..|+.+...      .....+.+.++.++|..+..  .....                      ........++++.|+ 
T Consensus       208 ~~H~~~~~~~~~~~~~~~~~~~a~~~l~~G~~~~i--g~g~~----------------------~~~~~~~~~l~~~g~~  263 (380)
T PRK09237        208 LTHCFNGKPNRILDEDGELRPSVLEALERGVRLDV--GHGTA----------------------SFSFKVAEAAIAAGIL  263 (380)
T ss_pred             EEecCCCCCCCccCCCCcchHHHHHHHHCCEEEEe--cCCCC----------------------cccHHHHHHHHHCCCC
Confidence            333333322      01233566666666643332  11000                      001112234456674 


Q ss_pred             eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCc
Q 013050          305 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHA  384 (450)
Q Consensus       305 ~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~A  384 (450)
                      ..+++||..+.+.                .......+...+..+.+.|++++++++++|.|||+++|+++.|+|++|+.|
T Consensus       264 ~~~l~tD~~~~~~----------------~~~~~~~l~~~~~~~~~~g~~~~~al~~aT~n~A~~lgl~~~G~l~~G~~A  327 (380)
T PRK09237        264 PDTISTDIYCRNR----------------INGPVYSLATVMSKFLALGMPLEEVIAAVTKNAADALRLPELGRLQVGSDA  327 (380)
T ss_pred             ceEEECCCCCCCc----------------ccchHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCCCCCcCCCCCcC
Confidence            4589999755321                001111233344445567999999999999999999999668999999999


Q ss_pred             cEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECCeEEEecCcccC
Q 013050          385 DLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKEGNHAP  440 (450)
Q Consensus       385 Dlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~v~~~g~~~~  440 (450)
                      ||++++.+... ...          ..+....+.   ...|+.|||+||+||.+-..++
T Consensus       328 Dlvv~~~~~~~-~~~----------~d~~~~~~~~~~~~~~~~~~v~G~~~~~~~~~~~  375 (380)
T PRK09237        328 DLTLFTLKDGP-FTL----------TDSEGDSLIGERLLTPLATVRGGKVVLTEQGSAE  375 (380)
T ss_pred             CEEEEeCCCCC-ccc----------cCCCCCEEEecCCCcceEEEECCEEEEccCcccc
Confidence            99999965422 110          111111221   1479999999999998766554

>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=99.97  E-value=6.1e-29  Score=240.45  Aligned_cols=339  Identities=17%  Similarity=0.156  Sum_probs=187.2

Q ss_pred             cceeE-EEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC---CC--------C---cc--------
Q 013050            2 CKRAV-EIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GR--------T---EW--------   58 (450)
Q Consensus         2 ~~~~V-~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~---~~--------~---~~--------   58 (450)
                      .+++| +|+||+|++||+...       .++||+.|++|+|||||+|+|+...   +.        .   .|        
T Consensus         9 ~~~~i~~v~~g~I~~Vg~~~~-------~~~iD~~g~lv~PGfVn~H~Hl~~~~~rg~~~~~~~~~~~l~~w~~~~~~~~   81 (418)
T cd01313           9 RNVRIEVDADGRIAAVNPDTA-------TEAVALLGGALLPGMPNLHSHAFQRAMAGLTEYRGSAADSFWTWRELMYRFA   81 (418)
T ss_pred             cCeEEEEeCCCeEEEecCCCC-------CcccccCCCeeccCccccCccHHHHHhcccccccCCCCCChhhHHHHHHHHH
Confidence            46899 999999999997532       2469999999999999999999642   10        0   01        


Q ss_pred             -----cch----HHHHHHHHhCCceEEEeCCCCCCCCC------CcHHHHHHHHHHHhc---CCceEEEEec--ccc-CC
Q 013050           59 -----EGF----PSGTKAAAAGGITTLIDMPLNSDPST------ISTETLKLKVDAAEK---RIYVDVGFWG--GLV-PE  117 (450)
Q Consensus        59 -----~~~----~~~~~~~~~~GvT~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~-~~  117 (450)
                           +.+    .....+++++|||+++++. ...+..      ..........+....   +..+....+.  ... ..
T Consensus        82 ~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~-~~~~~~~~~~~~~~~~~~~a~~~a~~~~GiR~~~~~~~~~~~~~~~~~  160 (418)
T cd01313          82 ARLTPEQIEAIARQLYIEMLLAGITAVGEFH-YVHHDPDGTPYADPAELAQRVIAAASDAGIGITLLPVLYARAGFGGPA  160 (418)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHhCCCEEEEee-eeccCCCCCccCChhhhHHHHHHHHHHhCCeEEeeeeEEeccCCCCCC
Confidence                 001    1223377899999999974 111100      001111222222221   1111111111  000 00


Q ss_pred             -C-------c---cchHHHHHHHH--cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC-hhhhhhh
Q 013050          118 -N-------A---YNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM-EKGSERH  183 (450)
Q Consensus       118 -~-------~---~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~~~  183 (450)
                       .       .   +..+.+.++++  .....+....++..   ...++++.++++++.|++ |+++.+|+.+ ...+...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~s~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~  236 (418)
T cd01313         161 PNPGQRRFINGYEDFLGLLEKALRAVKEHAAARIGVAPHS---LRAVPAEQLAALAALASE-KAPVHIHLAEQPKEVDDC  236 (418)
T ss_pred             CchhhhhhcccHHHHHHHHHHHhhhhccCCceEEEEccCC---CCCCCHHHHHHHHHHHhc-CCceEEEeCCCHHHHHHH
Confidence             0       0   11112222211  01112333333321   135789999999999999 9999999943 2211111


Q ss_pred             hhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecC
Q 013050          184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETC  263 (450)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~  263 (450)
                      ....+              .      ..++.+.+..        .-+.++.+.|+...  +.+.++.+++.|..+..  |
T Consensus       237 ~~~~g--------------~------~~i~~l~~~g--------~l~~~~~~~H~~~l--~~~~~~~la~~g~~v~~--~  284 (418)
T cd01313         237 LAAHG--------------R------RPVELLLDHG--------HLDARWCLVHATHL--TDNETLLLGRSGAVVGL--C  284 (418)
T ss_pred             HHHcC--------------C------CHHHHHHHcC--------CCCCCEEEEeCCCC--CHHHHHHHHHcCCEEEE--C
Confidence            11100              0      0112222211        11556777787763  23457777777765555  7


Q ss_pred             cchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCC-hhhhcccCCCccccCCCCcchhhHHH
Q 013050          264 PHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV-PELKLLDEGNFLKAWGGISSLQFVLP  342 (450)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~  342 (450)
                      |.....-.                   .....+.++++.|+.+++|||+.... ....+                  ...
T Consensus       285 P~sn~~lg-------------------~g~~p~~~l~~~Gv~v~lGtD~~~~~d~~~~~------------------~~~  327 (418)
T cd01313         285 PTTEANLG-------------------DGIFPAAALLAAGGRIGIGSDSNARIDLLEEL------------------RQL  327 (418)
T ss_pred             CCchhhcc-------------------CCCCCHHHHHHCCCcEEEecCCCCCcCHHHHH------------------HHH
Confidence            75432110                   01113456688999999999964321 11110                  011


Q ss_pred             HHHHHHH---------hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCcccc
Q 013050          343 VTWSYGR---------KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY  413 (450)
Q Consensus       343 ~~~~~~~---------~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~  413 (450)
                      ...+...         ...++++++|+++|.|||+++|++ .|+|++||+|||||+|.+.++..+..       . ++|+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~gA~alg~~-~Gsle~Gk~ADlvvld~~~~~~~p~~-------~-~~~~  398 (418)
T cd01313         328 EYSQRLRDRARNVLATAGGSSARALLDAALAGGAQALGLA-TGALEAGARADLLSLDLDHPSLAGAL-------P-DTLL  398 (418)
T ss_pred             HHHHHHHhcccccccccCCCCHHHHHHHHHHHHHHHhCCC-CCeECCCCccCEEEEcCCCccccCCC-------c-hhHH
Confidence            1111111         237999999999999999999997 99999999999999998865443220       0 1233


Q ss_pred             CCceE---eeEEEEEEECCe
Q 013050          414 LGRRL---SGKVLATISRGN  430 (450)
Q Consensus       414 ~~~~~---~~~v~~v~v~G~  430 (450)
                      ...++   ..+|+.|||+|+
T Consensus       399 ~~lv~~~~~~~V~~v~V~G~  418 (418)
T cd01313         399 DAWVFAAGDREVRDVVVGGR  418 (418)
T ss_pred             HHHeecCCCCceeEEEeCCC
Confidence            33333   247999999996

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>PRK07583 cytosine deaminase-like protein; Validated

Probab=99.97  E-value=2.1e-28  Score=238.22  Aligned_cols=347  Identities=20%  Similarity=0.198  Sum_probs=204.3

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc-------------------------
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-------------------------   57 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~-------------------------   57 (450)
                      .++|.|+||||++|++....+   .+.++||++|++|+|||||+|+|+.......                         
T Consensus        40 ~~~i~i~dg~i~~i~~~~~~~---~~~~~id~~g~~v~Pg~id~H~Hld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (438)
T PRK07583         40 LVDIEIADGKIAAILPAGGAP---DELPAVDLKGRMVWPCFVDMHTHLDKGHIWPRSPNPDGTFPGALDAVTADREAHWS  116 (438)
T ss_pred             EEEEEEECCEEEEEecCCCCC---CCCceecCCCCcccCCcccceeccccceecCCCCCCCCCHHHHHHHHHHHhhccCC
Confidence            569999999999999875422   2568999999999999999999985531000                         


Q ss_pred             ccc----hHHHHHHHHhCCceEEEeCCCCCCCC--CCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHH-
Q 013050           58 WEG----FPSGTKAAAAGGITTLIDMPLNSDPS--TISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-  130 (450)
Q Consensus        58 ~~~----~~~~~~~~~~~GvT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  130 (450)
                      .++    +....+.++..|+|+++.+. ...+.  ....+.+....+..............+.........+++.+.+. 
T Consensus       117 ~~~~~~r~~~~~~~a~~~Gtt~vRt~v-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~eL~~~v~~  195 (438)
T PRK07583        117 AEDLYRRMEFGLRCAYAHGTSAIRTHL-DSFAPQAAISWEVFAELREAWAGRIALQAVSLVPLDAYLTDAGERLADLVAE  195 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhChhhEEeee-ccCCCCcccHHHHHHHHHHHhhccCeEEEEEecChhhccCchHHHHHHHHHH
Confidence            112    44456678889999887764 32211  22233333333333333222222211111111122245555543 


Q ss_pred             c-CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHH
Q 013050          131 A-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE  209 (450)
Q Consensus       131 ~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  209 (450)
                      . |+.+.+.+..        ....+.+.++++.|+++|+++.+|+.+...                        +.   .
T Consensus       196 ~~gv~g~~~~~~--------~~~d~~l~~i~~lA~~~G~~v~vH~~E~~~------------------------~~---~  240 (438)
T PRK07583        196 AGGLLGGVTYMN--------PDLDAQLDRLFRLARERGLDLDLHVDETGD------------------------PA---S  240 (438)
T ss_pred             cCCEEeCCCCCC--------CCHHHHHHHHHHHHHHhCCCcEEeECCCCC------------------------ch---H
Confidence            3 4555443321        125588999999999999999999943221                        00   1


Q ss_pred             HHHHHHHHHHHhhccCCCCCCceEEEEecCCh-----hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEc
Q 013050          210 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCA  284 (450)
Q Consensus       210 ~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (450)
                      ..+....+.+.+.   ++  ..++++.|+...     ....+.++.+++.|+.++.  ||...........      ...
T Consensus       241 ~~l~~~~~~~~~~---G~--~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~vv~--~P~~~~~l~~~~~------~~~  307 (438)
T PRK07583        241 RTLKAVAEAALRN---GF--EGKVTCGHCCSLAVQPEEQAQATIALVAEAGIAIVS--LPMCNLYLQDRQP------GRT  307 (438)
T ss_pred             HHHHHHHHHHHHh---CC--CCCEEEEeccchhcCCHHHHHHHHHHHHHcCCeEEE--CcchhhhhcCCCc------CCC
Confidence            1133334433332   11  346888888642     1235778888888876665  6654322111000      001


Q ss_pred             CCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCC-cchhhHHHHHHHHHHhcCCCHHHHHHHHh
Q 013050          285 PPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI-SSLQFVLPVTWSYGRKYGVTLEQLASWWS  363 (450)
Q Consensus       285 ~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~gls~~~al~~aT  363 (450)
                      |..+   ....+.++++.|+.+++|||+.+. .         |.  +.|. ...+. +.... .....+.+++++++++|
T Consensus       308 p~~~---~~~~v~~l~~aGV~valGtD~~~d-~---------~~--p~g~~~~~~~-~~~a~-~~~~~~~~~~~al~~~T  370 (438)
T PRK07583        308 PRWR---GVTLVHELKAAGIPVAVASDNCRD-P---------FY--AYGDHDMLEV-FREAV-RILHLDHPYDDWPAAVT  370 (438)
T ss_pred             CCCC---CcchHHHHHHCCCeEEEEeCCCCC-C---------CC--CCCCcCHHHH-HHHHH-HHHhcCCcHHHHHHHHh
Confidence            2111   123456778889999999997531 1         11  1121 11111 11111 12234688999999999


Q ss_pred             hchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecC
Q 013050          364 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG  436 (450)
Q Consensus       364 ~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g  436 (450)
                      .|||+++|+++.|+|++|+.|||||+|.++...+..+                  ...+..||.+|++|....
T Consensus       371 ~~~A~~lg~~~~G~i~~G~~ADlvv~d~~~~~~~~~~------------------~~~~~~V~~~G~~v~~~~  425 (438)
T PRK07583        371 TTPADIMGLPDLGRIAVGAPADLVLFKARSFSELLSR------------------PQSDRIVLRAGKPIDTTL  425 (438)
T ss_pred             HHHHHHcCCCCCCCcCCCCCCCEEEEcCCCHHHHHhc------------------CCCccEEEECCEEecccC
Confidence            9999999994489999999999999998864332111                  125678999999987654

>PRK08418 chlorohydrolase; Provisional

Probab=99.97  E-value=8.3e-29  Score=238.09  Aligned_cols=352  Identities=17%  Similarity=0.118  Sum_probs=186.4

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC---------cc-c------------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------EW-E------------   59 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---------~~-~------------   59 (450)
                      .+++|+|+ |+|++|++..+.+...++.+++|+.|++|+|||||+|+|+....+.         .| .            
T Consensus        20 ~~~~v~v~-~~I~~ig~~~~~~~~~~~~~vid~~g~~v~PG~Vn~H~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~l~~~   98 (408)
T PRK08418         20 EDGAVVFD-DKILEIGDYENLKKKYPNAKIQFFKNSVLLPAFINPHTHLEFSANKTTLDYGDFIPWLGSVINHREDLLEK   98 (408)
T ss_pred             eccEEEEC-CEEEEecCHHHHHhhCCCCcEEecCCcEEccCccccccchhhhhhccccCCCchHHHHHHHhhhhhhcCHH
Confidence            46789999 9999999753322112345689999999999999999999643111         11 0            


Q ss_pred             c----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCc----cchHH-HHHHHH
Q 013050           60 G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA----YNASA-LEALLN  130 (450)
Q Consensus        60 ~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~  130 (450)
                      .    ......+++++||||+.++. ...   .   ..    +... ...++............    ...+. +..+..
T Consensus        99 ~~~~~~~~~~~E~l~~GtTtv~d~~-~~~---~---~~----~a~~-~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (408)
T PRK08418         99 CKGALIQQAINEMLKSGVGTIGAIS-SFG---I---DL----EICA-KSPLRVVFFNEILGSNASAVDELYQDFLARFEE  166 (408)
T ss_pred             HHHHHHHHHHHHHHhcCceEEEEee-cch---h---hH----HHHH-hcCCeEEEEeeeeCCCccchhhhHHHHHHHHHh
Confidence            0    01123478999999999874 211   1   11    1111 22222222111110110    11111 111111


Q ss_pred             ---cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC-hhhhhhhhhhccCcCCccccccccCCCChH
Q 013050          131 ---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPS  206 (450)
Q Consensus       131 ---~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  206 (450)
                         .....+...+.+   +....++++.++++.+.|+++|+++.+|..+ ....+......+.-.+... .......|..
T Consensus       167 ~~~~~~~~~~~~~ap---h~~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~-~~~~~~~~~~  242 (408)
T PRK08418        167 SKKFKSKKFIPAIAI---HSPYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFE-KFLKEPKPLY  242 (408)
T ss_pred             hhcccCCceeEEEeC---CCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhh-hhcccccccC
Confidence               111223333322   2223678999999999999999999999954 3333322222220000000 0000000000


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCC
Q 013050          207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP  286 (450)
Q Consensus       207 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (450)
                         ..++.+..+.          +.+..+.|+..  -+.+.++.+++.|..+..  ||.....-+               
T Consensus       243 ---~pv~~l~~~g----------~~~~~~~H~~~--~~~~di~~la~~g~~v~~--cP~sn~~lg---------------  290 (408)
T PRK08418        243 ---TPKEFLELFK----------GLRTLFTHCVY--ASEEELEKIKSKNASITH--CPFSNRLLS---------------  290 (408)
T ss_pred             ---CHHHHHHHhC----------CCCeEEEeccc--CCHHHHHHHHHcCCcEEE--CHhHHHHhc---------------
Confidence               0122222221          22445566654  233455555566755544  775432110               


Q ss_pred             CCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHH-HHHHHhcCCCHHHHHHHHhhc
Q 013050          287 IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVT-WSYGRKYGVTLEQLASWWSER  365 (450)
Q Consensus       287 ~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~gls~~~al~~aT~~  365 (450)
                          .....+.++++.|+.+++|||+.+++...+++               +.+.... .........+++++++|+|.|
T Consensus       291 ----~g~~p~~~~~~~Gi~v~lGtD~~~~~~~~~~~---------------~em~~~~~~~~~~~~~~~~~~~l~~aT~~  351 (408)
T PRK08418        291 ----NKALDLEKAKKAGINYSIATDGLSSNISLSLL---------------DELRAALLTHANMPLLELAKILLLSATRY  351 (408)
T ss_pred             ----CCCccHHHHHhCCCeEEEeCCCCCCCCCcCHH---------------HHHHHHHHHhccCCccccHHHHHHHHHHH
Confidence                01123457788999999999975543322211               1111000 000001113478999999999


Q ss_pred             hhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEE
Q 013050          366 PAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV  432 (450)
Q Consensus       366 ~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v  432 (450)
                      ||++||++ .|+|++||+||||++|.+.+.+- ..         +.|+.......+|+.|||+|++|
T Consensus       352 gA~alg~~-~G~l~~G~~ADlv~~d~~~~~~~-~~---------~~~~~~~~~~~~v~~v~v~G~~v  407 (408)
T PRK08418        352 GAKALGLN-NGEIKEGKDADLSVFELPEECTK-KE---------QLPLQFILHAKEVKKLFIGGKEV  407 (408)
T ss_pred             HHHHhCCC-CccccCCCccCEEEEeCCCCCCC-hh---------HhHHHHHhccCccceEEECCEEc
Confidence            99999995 79999999999999997632111 01         22222112235799999999987

>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=99.97  E-value=4.5e-29  Score=237.48  Aligned_cols=343  Identities=17%  Similarity=0.154  Sum_probs=184.9

Q ss_pred             CEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC---------cc-c------------c----hHHH
Q 013050           11 GNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------EW-E------------G----FPSG   64 (450)
Q Consensus        11 g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---------~~-~------------~----~~~~   64 (450)
                      |+|++||+..+....++..+++|+.|++|+|||||+|+|+....+.         .| .            .    ....
T Consensus         1 ~~I~aVG~~~~~~~~~~~~~v~d~~g~~v~PGlVnaH~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~e~~~~~a~~~   80 (381)
T cd01312           1 DKILEVGDYEKLEKRYPGAKHEFFPNGVLLPGLINAHTHLEFSANVAQFTYGRFRAWLLSVINSRDELLKQPWEEAIRQG   80 (381)
T ss_pred             CeEEEECChHHHHhhcCCCeEEecCCcEEecCccccccccchhccccccCCCchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            6999999864433223567899999999999999999999544221         11 0            0    1122


Q ss_pred             HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC-ccch-HHHHHHHH---cCCcEEEEe
Q 013050           65 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNA-SALEALLN---AGVLGLKSF  139 (450)
Q Consensus        65 ~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~---~g~~~~~~~  139 (450)
                      ..+++++||||+.++. ..      .. ..........+..+.+...+. .... .... +.+....+   ..-..+...
T Consensus        81 ~~E~l~~G~Tt~~d~~-~~------~~-~~~a~~~~GiR~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  151 (381)
T cd01312          81 IRQMLESGTTSIGAIS-SD------GS-LLPALASSGLRGVFFNEVIGS-NPSAIDFKGETFLERFKRSKSFESQLFIPA  151 (381)
T ss_pred             HHHHHHhCCeEEEEec-CC------HH-HHHHHHHcCCcEEEEEeeECC-CCchhhhhHHHHHHHHHHhhccCccceEEE
Confidence            3477899999999985 21      11 111211111111122222110 1110 0111 11112211   111123333


Q ss_pred             cccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCh-hhhhhhhhhccCcCCccc-ccc--c-cCCCChHHHHHHHHH
Q 013050          140 MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRS-YST--Y-LKTRPPSWEEAAIRE  214 (450)
Q Consensus       140 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~-~~~--~-~~~~p~~~~~~~~~~  214 (450)
                      +.+.   ....++.+.++++.+.|+++++++.+|..+. ..........+...+... +..  + ..+..      .++.
T Consensus       152 ~~p~---a~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~------pv~~  222 (381)
T cd01312         152 ISPH---APYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLAT------AIDF  222 (381)
T ss_pred             ECCC---CCcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCC------HHHH
Confidence            3332   2235788999999999999999999999443 332222111100000000 000  0 00111      1222


Q ss_pred             HHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHH
Q 013050          215 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKE  294 (450)
Q Consensus       215 ~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (450)
                      +.++...        +.++.+.|+...  +.+.++.+++.|+.+..  ||......       +            ....
T Consensus       223 l~~~g~L--------~~~~~~~H~~~l--~~~~~~~l~~~g~~v~~--~P~sn~~l-------g------------~g~~  271 (381)
T cd01312         223 LDMLGGL--------GTRVSFVHCVYA--NLEEAEILASRGASIAL--CPRSNRLL-------N------------GGKL  271 (381)
T ss_pred             HHHcCCC--------CCCcEEEECCcC--CHHHHHHHHHcCCeEEE--Ccchhhhh-------c------------CCCc
Confidence            2222111        456777888763  23466777777866555  66432110       0            0112


Q ss_pred             HHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh--cCCCHHHHHHHHhhchhHHhCC
Q 013050          295 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK--YGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       295 ~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~gls~~~al~~aT~~~A~~lg~  372 (450)
                      .+.++++.|+.+++|||+...+...+++               .. +.......+.  ..+++.++|+|+|.|||++||+
T Consensus       272 p~~~~~~~Gv~v~lGtD~~~~~~~~d~~---------------~~-~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~  335 (381)
T cd01312         272 DVSELKKAGIPVSLGTDGLSSNISLSLL---------------DE-LRALLDLHPEEDLLELASELLLMATLGGARALGL  335 (381)
T ss_pred             CHHHHHHCCCcEEEeCCCCccCCCCCHH---------------HH-HHHHHHhcccccccCCHHHHHHHHHHHHHHHhCC
Confidence            3567788999999999975433221111               11 1111111111  1378899999999999999999


Q ss_pred             CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCe
Q 013050          373 VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN  430 (450)
Q Consensus       373 ~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~  430 (450)
                      + .|+|++||+||||++|.+.+.. +.          +.|+......++|..|||+||
T Consensus       336 ~-~Gsle~Gk~ADlvv~d~~~~~~-~~----------~~~~~~~~~~~~v~~v~v~G~  381 (381)
T cd01312         336 N-NGEIEAGKRADFAVFELPGPGI-KE----------QAPLQFILHAKEVRHLFISGK  381 (381)
T ss_pred             C-CCccCCCCcccEEEEeCCCcCC-CC----------ccHHHHHHccCCCCEEEecCC
Confidence            6 9999999999999999876411 11          122211223458999999996

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>TIGR01792 urease_alph urease, alpha subunit

Probab=99.97  E-value=9.9e-29  Score=238.36  Aligned_cols=338  Identities=23%  Similarity=0.268  Sum_probs=201.3

Q ss_pred             cceeEEEeCCEEEEeccCCCCC--CC-----CCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCce
Q 013050            2 CKRAVEIKEGNIISIVSEEDWP--RN-----SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGIT   74 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~--~~-----~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT   74 (450)
                      ++++|.|+||||++|++..++.  ..     ..+.++||++|++|+|||||+|+|+..+.         ..+.++..|||
T Consensus        82 ~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~P~---------~~~aAl~gGVT  152 (567)
T TIGR01792        82 YKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHYISPQ---------QVQAALDNGIT  152 (567)
T ss_pred             EEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCCCCcc---------HHHHHHhCceE
Confidence            4689999999999999754321  00     13568999999999999999999986553         35788999999


Q ss_pred             EEEeCCC----CCCCC--CCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCC
Q 013050           75 TLIDMPL----NSDPS--TISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDF  148 (450)
Q Consensus        75 ~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  148 (450)
                      ++++.+.    ++.+.  ...........+... ...+++++++..   .....+.+.++.+.|+.+++.+..+      
T Consensus       153 TmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa~-~~~in~g~~g~g---~~~~~~~L~e~i~aGa~gfK~h~~y------  222 (567)
T TIGR01792       153 TLIGGGTGPADGTNATTCTPGPWYLHRMLQAAD-GLPINFGFTGKG---SGSGPAALIEQIEAGACGLKVHEDW------  222 (567)
T ss_pred             EEecCCCccccCCCCcccccchhhHHHHHHHhc-cCCccEEEEeCC---ccchHHHHHHHHHcCCcEEEeCCCC------
Confidence            9999641    11111  122222232333333 355777766421   2234566778788999999986433      


Q ss_pred             CCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCC
Q 013050          149 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA  228 (450)
Q Consensus       149 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~  228 (450)
                       .++++.+.++++.|+++|.+|.+|++....                             ...++...+...        
T Consensus       223 -~~s~e~L~~al~~A~e~gv~V~iH~ET~~E-----------------------------~g~ve~t~~a~g--------  264 (567)
T TIGR01792       223 -GATPAAIDNALSVADEYDVQVAVHTDTLNE-----------------------------SGFVEDTIAAFK--------  264 (567)
T ss_pred             -CCCHHHHHHHHHHHHHcCCEEEEeCCCccc-----------------------------chHHHHHHHHHC--------
Confidence             578999999999999999999999955432                             112333333322        


Q ss_pred             CCceEEEEecCCh--hHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCCh------hhH-HH
Q 013050          229 EGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRDA------ANK-EK  295 (450)
Q Consensus       229 ~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~-~~  295 (450)
                       +.++|..|....  ....+.++.+...++..+ +.+| ..-++.+.+..    .-.+.+.+|.+.+-      +-+ +-
T Consensus       265 -~rpIh~~H~~G~g~ghapdi~~~~~~~~~~~~-st~p-t~p~~~~~~~e~~~m~~~~h~l~~~~~~d~~~a~~r~r~~t  341 (567)
T TIGR01792       265 -GRTIHTYHTEGAGGGHAPDIIVVVGYNNILPS-STNP-TLPYTVNTIDEHLDMLMVCHHLNPKIPEDVAFAESRIRKET  341 (567)
T ss_pred             -CCcchhHhhcCCCCCcHHHHHHHcCCCCcccC-CCCC-CCCCccCchhhhcCeEEEeccCCCCCcccchhhhhhcccee
Confidence             667777776531  144556666544432111 1111 12222222211    12233444443211      000 00


Q ss_pred             H---HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcCC----C----HHHH---HH
Q 013050          296 L---WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGV----T----LEQL---AS  360 (450)
Q Consensus       296 l---~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gl----s----~~~a---l~  360 (450)
                      +   .-+.+.|+..+++||..+....         ...     -  .++....... ...|.    +    .+.+   |+
T Consensus       342 ~~ae~~l~d~G~~~~~~sDs~~mgr~---------~~~-----~--~r~~q~a~k~~~~~g~~~~~~~~~~~~rl~r~L~  405 (567)
T TIGR01792       342 IAAEDVLQDMGAISMISSDSQAMGRI---------GEV-----V--TRCWQTADKMKKQRGPLPGDSPGNDNNRVKRYVA  405 (567)
T ss_pred             ccccchhhhCCcEEEecCCchhhCcc---------cce-----e--echHHHHHHHHHhcCCCcccccCChhhhHHHHHH
Confidence            0   1234569999999997532110         000     0  0000000011 11111    1    1112   99


Q ss_pred             HHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec-Ccc
Q 013050          361 WWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE-GNH  438 (450)
Q Consensus       361 ~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~-g~~  438 (450)
                      ++|.|||+++|+ +.+|+|++||.|||||||.+..          .              .++..||++|+++|.. |.+
T Consensus       406 ~yT~n~A~a~g~~~~~GsLe~Gk~ADlVv~~~d~f----------~--------------~~p~~v~~~G~i~~~~~Gd~  461 (567)
T TIGR01792       406 KYTINPAITHGISDYIGSIEVGKLADLVLWEPAFF----------G--------------VKPDMVLKGGLIAWAIMGDP  461 (567)
T ss_pred             HHhHHHHHHcCcccCceeeCCCCccCEEEEcCccc----------C--------------CChheEEECCEEEEEeCCCc
Confidence            999999999999 7899999999999999996631          0              1467999999999986 554


Q ss_pred             c
Q 013050          439 A  439 (450)
Q Consensus       439 ~  439 (450)
                      .
T Consensus       462 ~  462 (567)
T TIGR01792       462 N  462 (567)
T ss_pred             c
Confidence            3

This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.

>PRK05985 cytosine deaminase; Provisional

Probab=99.97  E-value=8.5e-28  Score=231.37  Aligned_cols=337  Identities=17%  Similarity=0.113  Sum_probs=198.1

Q ss_pred             eeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC--CCc-----cc-----------------
Q 013050            4 RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG--RTE-----WE-----------------   59 (450)
Q Consensus         4 ~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~--~~~-----~~-----------------   59 (450)
                      .+|.|++|+|++|++....+   ++.+++|++|++|+|||||+|+|+....  ..+     +.                 
T Consensus        17 ~~v~i~~g~i~~i~~~~~~~---~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   93 (391)
T PRK05985         17 VDILIRDGRIAAIGPALAAP---PGAEVEDGGGALALPGLVDGHIHLDKTFWGDPWYPNEPGPSLRERIANERRRRAASG   93 (391)
T ss_pred             eEEEEECCEEEEecCCCCCC---CCCcEEECCCCEEecceEeeEEccCccccCCccccCCCCCCHHHHHHHHHHhhccch
Confidence            47999999999999864432   2567999999999999999999995421  110     00                 


Q ss_pred             -c----hHHHHHHHHhCCceEEEeCCCCCCCC--CCcHHHHHHHHHHHhcCCceEEEEeccccCCC-ccchHHHHHHHHc
Q 013050           60 -G----FPSGTKAAAAGGITTLIDMPLNSDPS--TISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLNA  131 (450)
Q Consensus        60 -~----~~~~~~~~~~~GvT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  131 (450)
                       .    .....++++++|+|+++++. ...+.  ......+....+........++.......... ....+.+++..+.
T Consensus        94 ~~~~~~a~~~~~~~l~~G~t~vr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~ll~~~l~~  172 (391)
T PRK05985         94 HPAAERALALARAAAAAGTTAMRSHV-DVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQSGVLSRPGTAELLDAALRA  172 (391)
T ss_pred             hHHHHHHHHHHHHHHhcCcceEEeeE-ccCCCcccchHHHHHHHHHHhhCcccEEEEeccCccccCCcCHHHHHHHHHHc
Confidence             1    11124578899999999985 33221  23344444444443333444444332211111 1234567777777


Q ss_pred             CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHH
Q 013050          132 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA  211 (450)
Q Consensus       132 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  211 (450)
                      |+..+ ....+.   .....+.+.+.++++.|+++|+++.+|++....                        +   ....
T Consensus       173 g~~~~-gg~~p~---~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d------------------------~---~~~~  221 (391)
T PRK05985        173 GADVV-GGLDPA---GIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGE------------------------L---GAFQ  221 (391)
T ss_pred             CCCEE-eCCCCC---CcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCC------------------------c---cHHH
Confidence            76422 222111   112456689999999999999999999854321                        0   0112


Q ss_pred             HHHHHHHHHhhccCCCCCCceEEEEecCCh-----hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCC
Q 013050          212 IRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP  286 (450)
Q Consensus       212 ~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (450)
                      +..+++.....   ++  ..++.+.|+...     .+..+.++.+++.|+.+..  ++.                     
T Consensus       222 ~~~~~e~~~~~---g~--~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~--~~~---------------------  273 (391)
T PRK05985        222 LERIAARTRAL---GM--QGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMT--NAP---------------------  273 (391)
T ss_pred             HHHHHHHHHHh---CC--CCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEE--eCC---------------------
Confidence            33444444333   11  135777887532     1223667788888876654  210                     


Q ss_pred             CCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhc
Q 013050          287 IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSER  365 (450)
Q Consensus       287 ~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~  365 (450)
                      .  ......+.++++.|+.+++|||+... ++...          ......+. +........ ...-+++++|+|+|.|
T Consensus       274 ~--~~~~~~~~~l~~~Gv~v~lGtD~~~~-~~~p~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~al~~~T~~  339 (391)
T PRK05985        274 G--SVPVPPVAALRAAGVTVFGGNDGIRD-TWWPY----------GNGDMLER-AMLIGYRSGFRTDDELAAALDCVTHG  339 (391)
T ss_pred             C--CCCCCCHHHHHHCCCeEEEecCCCCC-CCcCC----------CCCcHHHH-HHHHHHHHccCChHHHHHHHHHHcch
Confidence            0  01112356778899999999996421 11100          01111111 111100000 1112457899999999


Q ss_pred             hhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecC
Q 013050          366 PAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG  436 (450)
Q Consensus       366 ~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g  436 (450)
                      ||+++|++. ++|++||.||||++|.++.......      .            ..+..||++|++||++|
T Consensus       340 ~A~~lg~~~-~~l~~G~~ADlvvld~~~~~~~~~~------~------------~~~~~v~~~G~~v~~~~  391 (391)
T PRK05985        340 GARALGLED-YGLAVGARADFVLVDAETVAEAVVA------V------------PVRRLVVRGGRIVARDG  391 (391)
T ss_pred             hHHHhCCcc-cCCCCCCcCCEEEECCCCHHHHHhh------C------------CcceEEEECCEEEecCC
Confidence            999999944 4699999999999998753221111      1            13567999999999986

>PRK09230 cytosine deaminase; Provisional

Probab=99.97  E-value=3.1e-27  Score=228.25  Aligned_cols=351  Identities=16%  Similarity=0.183  Sum_probs=198.7

Q ss_pred             eeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC---CCCc-cc--------------------
Q 013050            4 RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRTE-WE--------------------   59 (450)
Q Consensus         4 ~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~---~~~~-~~--------------------   59 (450)
                      .+|.|+||+|++|++..+..  .+..++||+.|++|+|||||+|+|+...   +... .+                    
T Consensus        20 ~~i~i~~g~I~~i~~~~~~~--~~~~~~id~~g~~v~PGlid~H~H~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~t~   97 (426)
T PRK09230         20 WQITIEDGKISAIEPQSEAS--LEAGEVLDAEGGLAIPPFIEPHIHLDTTQTAGEPNWNQSGTLFEGIERWAERKALLTH   97 (426)
T ss_pred             EEEEEECCEEEEecCCCCCC--CCCCceEeCCCCEeccceeEEEEccccceecCCCccCCCCCHHHHHHHHHHHHhcCCH
Confidence            47999999999999864321  1356899999999999999999999753   1110 01                    


Q ss_pred             -c----hHHHHHHHHhCCceEEEeCCCCCC-CCCCcHHHHHHHHHHHhcCCceEEEEecccc-CCCccchHHHHHHHHcC
Q 013050           60 -G----FPSGTKAAAAGGITTLIDMPLNSD-PSTISTETLKLKVDAAEKRIYVDVGFWGGLV-PENAYNASALEALLNAG  132 (450)
Q Consensus        60 -~----~~~~~~~~~~~GvT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g  132 (450)
                       +    ......+++++|+|+++++. ... +.....+.+....+.......+.+....... ...+...+.+++..+.+
T Consensus        98 ed~~~~a~~~~~e~l~~GvTtvr~~~-d~~~~~~~~~~a~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~a~~~~  176 (426)
T PRK09230         98 EDVKQRAWQTLKWQIANGIQHVRTHV-DVSDPTLTALKAMLEVKEEVAPWVDLQIVAFPQEGILSYPNGEALLEEALRLG  176 (426)
T ss_pred             HHHHHHHHHHHHHHHHcCcccEEecc-ccCCcchhHHHHHHHHHHHhhCcceEEEEeccCccccCCccHHHHHHHHHHcC
Confidence             0    12234477899999999985 321 1111122233333333333333333322110 01122234455555554


Q ss_pred             CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHH
Q 013050          133 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI  212 (450)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  212 (450)
                      ..-+. ...+..  .....+.+.+.++++.|+++|+++.+|+.+...                        +.   ....
T Consensus       177 ~~~vg-~~p~~~--~~~~~~~e~l~~~~~~A~~~g~~~~~H~~E~~~------------------------~~---~~~~  226 (426)
T PRK09230        177 ADVVG-AIPHFE--FTREYGVESLHKAFALAQKYDRLIDVHCDEIDD------------------------EQ---SRFV  226 (426)
T ss_pred             CCEEe-CCCCcc--ccchhHHHHHHHHHHHHHHhCCCcEEEECCCCC------------------------cc---hHHH
Confidence            42221 111110  001124688999999999999999999954321                        00   0112


Q ss_pred             HHHHHHHHhhccCCCCCCceEEEEecCCh-----hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCC
Q 013050          213 RELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI  287 (450)
Q Consensus       213 ~~~~~l~~~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (450)
                      ....++....+   .  +.++.+.|+...     ....+.++.+++.|+.+..  ||...........       ..| .
T Consensus       227 ~~~~~~~~~~g---l--~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~vv~--cP~sn~~l~~~~~-------~~p-~  291 (426)
T PRK09230        227 ETVAALAHREG---M--GARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVA--NPLVNIHLQGRFD-------TYP-K  291 (426)
T ss_pred             HHHHHHHHHhC---C--CCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeEEE--CcchhhhhcCCCC-------CCC-C
Confidence            33455555431   1  456777887754     1256678888888876655  7754322111100       001 0


Q ss_pred             CChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCC-CHHHHHHHHhhch
Q 013050          288 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASWWSERP  366 (450)
Q Consensus       288 ~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gl-s~~~al~~aT~~~  366 (450)
                        ......+.++++.|+.+++|||+. .+....           .|....-..+............ ++.++++|+|.||
T Consensus       292 --~~g~~pi~~l~~aGv~V~lGTD~~-~d~~~~-----------~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~maT~~g  357 (426)
T PRK09230        292 --RRGITRVKEMLEAGINVCFGHDDV-FDPWYP-----------LGTANMLQVLHMGLHVCQLMGYGQINDGLNLITTHS  357 (426)
T ss_pred             --CCCCcCHHHHHHCCCeEEEecCCC-CCCCcC-----------CCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHhcch
Confidence              011223567788999999999963 221111           0111111111111111111112 3689999999999


Q ss_pred             hHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050          367 AKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE  435 (450)
Q Consensus       367 A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~  435 (450)
                      |++||+++.| |++||.||||++|.+.+..+      .+.            ...+..|+++|++|+..
T Consensus       358 A~alg~~~~g-le~G~~ADlv~~~~~~~~~~------~~~------------~~~~~~v~~~G~~v~~~  407 (426)
T PRK09230        358 ARTLNLQDYG-IEVGNPANLIILPAENGFDA------VRR------------QVPVRYSIRHGKVIAET  407 (426)
T ss_pred             hHHhCCCCcC-CCCCCcCCEEEEeCCCHHHH------Hhc------------cCCceEEEECCEEEecc
Confidence            9999995477 99999999999996543222      111            13678999999999865

>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]

Probab=99.97  E-value=1.8e-28  Score=237.56  Aligned_cols=354  Identities=18%  Similarity=0.161  Sum_probs=198.9

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCC---------Ccc--------------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR---------TEW--------------   58 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~---------~~~--------------   58 (450)
                      +.+++.|++|+|+.|++..+.+   +..+++|++|++|+|||||+|+|+.....         ..|              
T Consensus        21 ~~~~~~i~~g~I~~ig~~~~~~---~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~~g~~~~~~l~~wl~~~~~~~~~~~~~   97 (421)
T COG0402          21 EDGDLVIEDGKIVAIGANAEGP---PDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLADDLPLLEWLERYVWPREARLLT   97 (421)
T ss_pred             eeeeEEEcCCEEEEeCCcCCCC---CCceeecCCCCEeccCccccccchHHHHHhhhhcccchHHHHHHHHhHHHhhcCC
Confidence            4589999999999999986543   46789999999999999999999853211         111              


Q ss_pred             -cc----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecc-ccCCC---cc----chHHH
Q 013050           59 -EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG-LVPEN---AY----NASAL  125 (450)
Q Consensus        59 -~~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~----~~~~~  125 (450)
                       +.    ......+++++|+|+++.++ ...  ..+...+.........+......+... +....   .+    ..+.+
T Consensus        98 ~e~~~~~a~~~~~e~l~~G~t~~~~~~-~~~--~~~~~~~~~a~~~~g~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  174 (421)
T COG0402          98 EEDLYARALLALLEMLRNGTTTARTHV-DVV--AESADAAFEAALEVGLRAVLGPVLQDVAFPDPGAETDEELEETEELL  174 (421)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccccccc-chh--hhhHHHHHHHHHHhCCeeEeeeccccCCCCcccccchHHHHHHHHHH
Confidence             01    12234478999999977665 111  111111111222221121111111110 01111   11    12334


Q ss_pred             HHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC-ChhhhhhhhhhccCcCCccccccccCCCC
Q 013050          126 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE-MEKGSERHVKLEDDTLDTRSYSTYLKTRP  204 (450)
Q Consensus       126 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  204 (450)
                      +++...+  .+.....+.   ....++.+.++.+.+.++++|+++.+|+. +...++......+                
T Consensus       175 ~~~~~~~--~~~~~~~p~---~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g----------------  233 (421)
T COG0402         175 REAHGLG--RDVVGLAPH---FPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLEPYG----------------  233 (421)
T ss_pred             HHHhcCC--CeeEEEecC---CCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcC----------------
Confidence            4444455  222222221   11357889999999999999999999994 4433333332111                


Q ss_pred             hHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEc
Q 013050          205 PSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCA  284 (450)
Q Consensus       205 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (450)
                          ...++.......       . +.+..+.|+.+.  +.+.++.+++.|+.+..  ||.....-              
T Consensus       234 ----~~~~~~~~~~g~-------l-~~~~~~~H~~~~--~~~e~~~l~~~g~~v~~--cP~sN~~L--------------  283 (421)
T COG0402         234 ----ARPVERLDLLGL-------L-GSHTLLAHCVHL--SEEELELLAESGASVVH--CPRSNLKL--------------  283 (421)
T ss_pred             ----CCHHHHHHHcCC-------C-CCCeEEEEeccC--CHHHHHHHhhCCCeEEE--Ccchhccc--------------
Confidence                000111111111       1 233444555442  22233334466655554  77543221              


Q ss_pred             CCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHH---HHHHH
Q 013050          285 PPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE---QLASW  361 (450)
Q Consensus       285 ~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~---~al~~  361 (450)
                         ..  ...++.++++.|+.+.+|||...++...+++.              +......++.......+..   ++++|
T Consensus       284 ---~s--G~~p~~~~~~~gv~v~~gTD~~~~~~~~d~l~--------------~~~~a~~l~~~~~~~~~~~~~~~~l~~  344 (421)
T COG0402         284 ---GS--GIAPVRRLLERGVNVALGTDGAASNNVLDMLR--------------EMRTADLLQKLAGGLLAAQLPGEALDM  344 (421)
T ss_pred             ---cC--CCCCHHHHHHcCCCEEEecCCccccChHHHHH--------------HHHHHHHHHHhhcCCCcccchHHHHHH
Confidence               00  01124567888999999999988876544331              1112222222222121111   38999


Q ss_pred             HhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc
Q 013050          362 WSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA  439 (450)
Q Consensus       362 aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~  439 (450)
                      +|.|||++||+.+.|+|++||.|||||+|.+.+...+.. +       .+.+........|..||++|+.++.+|++.
T Consensus       345 aT~~gA~alg~~~~G~le~G~~ADlvvld~~~~~~~~~~-~-------~~~~v~~~~~~~v~~v~~~g~~v~~~~~~~  414 (421)
T COG0402         345 ATLGGAKALGLDDIGSLEVGKKADLVVLDASAPHLAPLR-P-------VSRLVFAAGGKDVDRVLVDGRLVMEDGRLL  414 (421)
T ss_pred             HHhhHHHHcCCcccCCcccccccCEEEEcCCCCcccccc-H-------HHHHHHhcCCCceeEEEECCEEEEEcceeh
Confidence            999999999986799999999999999998875332211 0       001111111237999999999999999886

>PLN02303 urease

Probab=99.96  E-value=2.2e-28  Score=241.13  Aligned_cols=333  Identities=22%  Similarity=0.279  Sum_probs=198.7

Q ss_pred             cceeEEEeCCEEEEeccCCCCC--C-------CCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWP--R-------NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG   72 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~--~-------~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~G   72 (450)
                      ++++|+|+||+|++|++...+.  .       ..++.++||++|++|+|||||+|+|+..++.         .++.+++|
T Consensus       350 ~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIVtPG~ID~HVHf~~Pg~---------~~eaLasG  420 (837)
T PLN02303        350 YKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIVTAGGIDCHVHFICPQL---------ATEAIASG  420 (837)
T ss_pred             EEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEEEeCEEEeecCCCCCcH---------HHHHHHHh
Confidence            5689999999999999753221  1       0124689999999999999999999976642         26677778


Q ss_pred             ceEEEeCCCCC----CCCC--CcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCC
Q 013050           73 ITTLIDMPLNS----DPST--ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN  146 (450)
Q Consensus        73 vT~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  146 (450)
                      +|+++.++...    .+..  .+...+..+.+... ..++++++++..   +....+.+.++.+.|+.+++.+..     
T Consensus       421 VTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~-~~pvn~Gf~gkG---~~s~l~eL~elieaGa~GfK~h~d-----  491 (837)
T PLN02303        421 ITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTD-DLPLNFGFTGKG---NTAKPEGLHEIIKAGAMGLKLHED-----  491 (837)
T ss_pred             HHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcc-cCCCcEEEEccC---cccCHHHHHHHHHcCcEEEEECCC-----
Confidence            88877764221    2222  35666776666433 446888887632   224567788888999999997532     


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050          147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG  226 (450)
Q Consensus       147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~  226 (450)
                        +..+++.+.++++.|+++|+++.+|+++...                             ...++..++...      
T Consensus       492 --~gvTpelL~raLe~AkelGVpVaIHAEdLnE-----------------------------~G~vE~t~~a~G------  534 (837)
T PLN02303        492 --WGTTPAAIDNCLDVAEEYDIQVTIHTDTLNE-----------------------------SGCVEHSIAAFK------  534 (837)
T ss_pred             --CCCCHHHHHHHHHHHHHcCCEEEEecCcccc-----------------------------cchHHHHHHHHC------
Confidence              2467889999999999999999999876322                             001122222221      


Q ss_pred             CCCCceEEEEecCCh--hHHHHHHHHHHhCCCcEE--EecCcchhcccccccCCCCCceEEcCCCCC------hhhH-HH
Q 013050          227 PAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSIT--VETCPHYLAFSAEEIPDGDTRFKCAPPIRD------AANK-EK  295 (450)
Q Consensus       227 ~~~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~  295 (450)
                         +.++|..|-...  --..+.++-+...++..+  ....|+..-.-.+.+...-.+.+.+|.+.+      .+-+ +-
T Consensus       535 ---~RpIh~~h~~Ga~gghapdi~~~~~~~nvlpsstnpt~p~t~nt~~e~~dm~m~~h~l~~~~~edvafa~srir~~t  611 (837)
T PLN02303        535 ---GRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPYTKNTIDEHLDMLMVCHHLDKNIPEDVAFAESRIRAET  611 (837)
T ss_pred             ---CChHHHHHhcCCCCCCCcHHHHhcCCCCccCCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccchh
Confidence               222332222110  022334444433322111  111111111111111111222333443311      0101 11


Q ss_pred             H---HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH---HH------------hcCCCHHH
Q 013050          296 L---WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY---GR------------KYGVTLEQ  357 (450)
Q Consensus       296 l---~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~------------~~gls~~~  357 (450)
                      +   .-+.+.|++.+++||+......                   ......+|+.   .+            ...++.++
T Consensus       612 iaaed~l~d~G~~s~~~SDs~amgr~-------------------ge~i~r~~q~A~k~~~~~g~l~~~~~~~dn~rv~~  672 (837)
T PLN02303        612 IAAEDILHDMGAISIISSDSQAMGRI-------------------GEVITRTWQTAHKMKSQRGALEPRGADNDNFRIKR  672 (837)
T ss_pred             hccchhhhccCCEEEEeccchhhCcc-------------------cceeeehHHHHHHHHHhcCCCCCccccccccCHHH
Confidence            1   1134469999999997532110                   0000111111   11            12367799


Q ss_pred             HHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050          358 LASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE  435 (450)
Q Consensus       358 al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~  435 (450)
                      +|+++|.|||+++|+ +.+|+|++||.||||||+.+.           +             ..++..||++|++||..
T Consensus       673 aL~~~TiN~A~AlG~~~~vGSLe~GK~ADlVvw~~~~-----------f-------------g~~~~~vi~~G~ivy~~  727 (837)
T PLN02303        673 YIAKYTINPAIAHGMSHFVGSVEVGKLADLVLWKPAF-----------F-------------GAKPEMVIKGGQIAWAQ  727 (837)
T ss_pred             HHHHHhHHHHHHCCcccCceeeCCCcccCEEEecccc-----------c-------------CCCeeEEEECCEEEEcc
Confidence            999999999999999 789999999999999999542           0             02688999999999986

>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate

Probab=99.96  E-value=1.4e-27  Score=229.10  Aligned_cols=318  Identities=18%  Similarity=0.178  Sum_probs=183.0

Q ss_pred             EEEeCCEEEEeccCCCCCC-CCCCCcEEecCCCEEeccceeeccccCCCCCCc-----------------------c---
Q 013050            6 VEIKEGNIISIVSEEDWPR-NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-----------------------W---   58 (450)
Q Consensus         6 V~I~~g~I~~Ig~~~~~~~-~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~-----------------------~---   58 (450)
                      |+|+||+|++|++....+. .+.+.++||++|++|+|||||+|+|+.......                       +   
T Consensus         1 i~i~~g~I~~ig~~~~~~~~~~~~~~~iD~~G~~v~Pg~vn~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (371)
T cd01296           1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAGGGILSTVR   80 (371)
T ss_pred             CEEECCEEEEEeCchhcccccCCCceEEECCCCEEecceeecCCCCcCCCCcHHHHHHHHCCCCHHHHHHcCCChHHHHH
Confidence            6799999999998654321 113568999999999999999999996532110                       0   


Q ss_pred             -------cc----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc--CCceEEEEec--cccCCC---cc
Q 013050           59 -------EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWG--GLVPEN---AY  120 (450)
Q Consensus        59 -------~~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~---~~  120 (450)
                             ++    .......++++|||++.++.............++ ..+....  ...+...+.+  ......   ..
T Consensus        81 ~~~~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~  159 (371)
T cd01296          81 ATRAASEDELFASALRRLARMLRHGTTTVEVKSGYGLDLETELKMLR-VIRRLKEEGPVDLVSTFLGAHAVPPEYKGREE  159 (371)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHH-HHHHHHhhCCCceEeeeeecccCCcccCChHH
Confidence                   01    1123447789999999985211111011111122 2222222  1222221211  111111   01


Q ss_pred             chH-HHHHHH-----HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcc
Q 013050          121 NAS-ALEALL-----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR  194 (450)
Q Consensus       121 ~~~-~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~  194 (450)
                      ..+ ...+++     +.++.+++.+...      ...+.+.+.++++.|+++|+++.+|+.....               
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~---------------  218 (371)
T cd01296         160 YIDLVIEEVLPAVAEENLADFCDVFCEK------GAFSLEQSRRILEAAKEAGLPVKIHADELSN---------------  218 (371)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEeecC------CccCHHHHHHHHHHHHHCCCeEEEEEcCcCC---------------
Confidence            000 012222     2456666664322      2356889999999999999999999954221               


Q ss_pred             ccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccccc
Q 013050          195 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI  274 (450)
Q Consensus       195 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~  274 (450)
                               +     ..+...    ...       +. ..+.|+...  +.+.++.+++.|+.+..  ||........  
T Consensus       219 ---------~-----~~~~~~----~~~-------g~-~~i~H~~~~--~~~~i~~la~~g~~v~~--~P~~~~~l~~--  266 (371)
T cd01296         219 ---------I-----GGAELA----AEL-------GA-LSADHLEHT--SDEGIAALAEAGTVAVL--LPGTAFSLRE--  266 (371)
T ss_pred             ---------C-----CHHHHH----HHc-------CC-CeeHHhcCC--CHHHHHHHHHcCCeEEE--ChHHHHHhCC--
Confidence                     0     011111    111       21 224555442  23567777777766554  6643322100  


Q ss_pred             CCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCC
Q 013050          275 PDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGV  353 (450)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gl  353 (450)
                              .         ...+.++++.|+.+++|||+.|....                   ...+...+.. ....++
T Consensus       267 --------~---------~~~~~~l~~~Gv~v~lgsD~~p~~~~-------------------~~~l~~~~~~~~~~~~l  310 (371)
T cd01296         267 --------T---------YPPARKLIDAGVPVALGTDFNPGSSP-------------------TSSMPLVMHLACRLMRM  310 (371)
T ss_pred             --------C---------CCCHHHHHHCCCcEEEecCCCCCCCh-------------------HHHHHHHHHHHHHhcCC
Confidence                    0         11245678899999999997543211                   0112222222 345689


Q ss_pred             CHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECC
Q 013050          354 TLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG  429 (450)
Q Consensus       354 s~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G  429 (450)
                      +++++++++|.|||+++|+ +++|+|++||+|||||+|.++...+...      .          ...+|..||++|
T Consensus       311 ~~~~al~~aT~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~~~~------~----------~~~~v~~v~~~G  371 (371)
T cd01296         311 TPEEALTAATINAAAALGLGETVGSLEVGKQADLVILDAPSYEHLAYR------F----------GVNLVEYVIKNG  371 (371)
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCceeeCCCCCcCEEEECCCchHhhhhh------c----------CCCCceEEEeCc
Confidence            9999999999999999999 6789999999999999998864322110      0          013689999998

In bacteria, the enzyme is part of histidine utilization (hut) operon.

>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]

Probab=99.96  E-value=1e-27  Score=226.32  Aligned_cols=311  Identities=23%  Similarity=0.276  Sum_probs=202.1

Q ss_pred             CcceeEEEeCCEEEEe-ccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeC
Q 013050            1 MCKRAVEIKEGNIISI-VSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM   79 (450)
Q Consensus         1 ~~~~~V~I~~g~I~~I-g~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~   79 (450)
                      ++.++|+|.+|+|+.| ++..     .+++++||+.|++|.|||||.|.|....-..    ...-.+..+.+|+||++.-
T Consensus        41 i~~~dIaI~~grI~~v~~~~~-----~e~~~~iDa~g~yivPGfID~H~HIESSm~t----P~~FA~~Vlp~GtTtvV~D  111 (584)
T COG1001          41 IYKGDIAIAGGRIVGVIGEYR-----AEATEVIDAAGRYIVPGFIDAHLHIESSMLT----PSEFARAVLPHGTTTVVSD  111 (584)
T ss_pred             EEeeeEEEECCEEEEeecCcC-----cccceeecCCCCEeccceeecceeccccccC----HHHHHHHhhccCceEEeeC
Confidence            3678999999999995 3322     2578999999999999999999998765433    4556778899999999886


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccc-cCCC-----c--cchHHHHHHHH-cCCcEEEEecccCCCCCCCC
Q 013050           80 PLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL-VPEN-----A--YNASALEALLN-AGVLGLKSFMCPSGINDFPM  150 (450)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~--~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~  150 (450)
                      |+ ..-.....+.+..+.+.+.. .++++.++.+. .+..     +  -..+.++++.+ ..+.++..++.+++.    .
T Consensus       112 PH-EIaNV~G~~Gi~~ml~~a~~-~pl~~~~~~pScVPat~~Et~Ga~l~a~~i~e~~~~p~Vigl~E~Mn~pgV----i  185 (584)
T COG1001         112 PH-EIANVLGEDGIRFMLDEAKE-TPLKVYVMLPSCVPATPFETSGAELTAEDIKELLEHPEVIGLGEMMNFPGV----I  185 (584)
T ss_pred             cH-HHHhhccHHHHHHHHHHHhh-CCeEEEEecccCccCCccccCCceecHHHHHHHhhCCCccchhhhcCCchh----c
Confidence            62 21122345556666665544 56777665331 2211     1  13577888877 688888888887765    4


Q ss_pred             CCHHHHHHHHHHHHhcCCcEEEecCChhhhh-hhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCC
Q 013050          151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSE-RHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE  229 (450)
Q Consensus       151 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  229 (450)
                      ..++.+...++.++++|++|..|+......+ ..+..-|...|+              |....+++++..+.        
T Consensus       186 ~~D~~~l~kl~a~~~~~k~VdGHapgl~g~~Ln~Y~aaGi~tDH--------------E~~t~EEa~~klr~--------  243 (584)
T COG1001         186 EGDPDMLAKLEAARKAGKPVDGHAPGLSGKELNAYIAAGISTDH--------------ESTTAEEALEKLRL--------  243 (584)
T ss_pred             cCCHHHHHHHHHHHHcCCeecccCCCCChHHHHHHHhcCCCcCc--------------ccCCHHHHHHHHhC--------
Confidence            5667778889999999999999995433210 111111111111              01111222222222        


Q ss_pred             CceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHh-cC-CeeE
Q 013050          230 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM-DG-HIDM  307 (450)
Q Consensus       230 ~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~  307 (450)
                      |..+.+.+.|.. ..                                                ...+...+. .+ ..++
T Consensus       244 Gm~i~iReGS~a-~d------------------------------------------------l~~l~~~i~e~~~~~~~  274 (584)
T COG1001         244 GMKIMIREGSAA-KD------------------------------------------------LAALLPAITELGSRRVM  274 (584)
T ss_pred             CcEEEEEcCchh-hh------------------------------------------------HHHHHHHHhhcCCceEE
Confidence            333333333322 11                                                111212122 12 3456


Q ss_pred             EcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEE
Q 013050          308 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLV  387 (450)
Q Consensus       308 ~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlv  387 (450)
                      +.||....+....                 +-.+..+++.+.+.|++|.+|++|||+|||+.+|+++.|.|+||+.||||
T Consensus       275 lcTDD~~p~dl~~-----------------eGhld~~vR~Ai~~Gv~p~~a~qmAtiN~A~~~gl~~~G~iAPG~~ADlv  337 (584)
T COG1001         275 LCTDDRHPDDLLE-----------------EGHLDRLVRRAIEEGVDPLDAYQMATINPAEHYGLDDLGLIAPGRRADLV  337 (584)
T ss_pred             EECCCCChhHhhh-----------------cCCHHHHHHHHHHcCCCHHHHHHHHhcCHHHHcCCcccccccCCccccEE
Confidence            7888543321111                 11366777888899999999999999999999999669999999999999


Q ss_pred             EEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc
Q 013050          388 VWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA  439 (450)
Q Consensus       388 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~  439 (450)
                      +++           ++..              -+|.+|+++|++|.++|+-+
T Consensus       338 i~~-----------DL~~--------------~~v~~V~~~G~~v~~~g~~l  364 (584)
T COG1001         338 ILE-----------DLRN--------------FKVTSVLIKGRVVAEDGKAL  364 (584)
T ss_pred             EEc-----------cccc--------------CceeEEEECCEEEecCCcee
Confidence            999           2211              27899999999999999733

>PRK14085 imidazolonepropionase; Provisional

Probab=99.96  E-value=1e-27  Score=229.78  Aligned_cols=296  Identities=19%  Similarity=0.182  Sum_probs=176.0

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc-----------c------------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-----------W------------   58 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~-----------~------------   58 (450)
                      .+++|+|++|+|++|++..+.+   .+.++||++|++|||||||+|+|+.......           +            
T Consensus        27 ~~~~v~i~~g~I~~Vg~~~~~~---~~~~~iD~~g~~v~PGlId~H~Hl~~~~~r~~~~~~~~~~~~~~~~~i~~~~~~~  103 (382)
T PRK14085         27 RDAAVVVEGGRVAWVGPAADAP---AADERVDAGGRAVLPGFVDSHSHLVFAGDRSAEFAARMAGEPYSAGGIRTTVAAT  103 (382)
T ss_pred             cCcEEEEECCEEEEEcCCccCC---CCCeEEeCCCCEEecCeEecCcCccccCChhHHHHhhhcCCCccCCChHHHHHHH
Confidence            4678999999999999864322   3568999999999999999999996432210           0            


Q ss_pred             -----cc----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecc--ccC---CCc-cchH
Q 013050           59 -----EG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG--LVP---ENA-YNAS  123 (450)
Q Consensus        59 -----~~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~-~~~~  123 (450)
                           ++    .....++++++|+|++++++ ...  ......+... +... .........+.  ...   .+. ...+
T Consensus       104 ~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~-~~~--~~~~~~~~~~-~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~  178 (382)
T PRK14085        104 RAASDEELRANVRRLVAEALRQGTTTVETKT-GYG--LTVEDEARSA-RIAA-EFTDEVTFLGAHVVPPEYAGDADEYVD  178 (382)
T ss_pred             HhCCHHHHHHHHHHHHHHHHhCCceEEEcCC-cCC--CCHHHHHHHH-HHHH-HhhhcceeeccccCCcccCCCHHHHHH
Confidence                 11    11235578999999999985 221  1111112111 1111 11101111110  011   111 1111


Q ss_pred             H----HHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccc
Q 013050          124 A----LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY  199 (450)
Q Consensus       124 ~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (450)
                      .    +...++.....++.+...      ...+.++++++++.|+++|+++.+|+.....                    
T Consensus       179 ~~~~~~~~~~~~~~~~idi~~~~------~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~--------------------  232 (382)
T PRK14085        179 LVCGPMLDAVAPHARWIDVFCER------GAFDEDQSRRVLTAGRAAGLGLRVHGNQLGP--------------------  232 (382)
T ss_pred             HHHHHHHHHHHHhCCeEEEEecC------CCCCHHHHHHHHHHHHHcCCCeEEEeCcccC--------------------
Confidence            1    123444455566665422      1467899999999999999999999943110                    


Q ss_pred             cCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCC
Q 013050          200 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT  279 (450)
Q Consensus       200 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~  279 (450)
                               ...+..+.++           +. ..+.|+..  -+.+.++.+++.|+.++  ++|......         
T Consensus       233 ---------~~~v~~~~~~-----------g~-~~i~H~~~--l~~~~~~~la~~gv~~~--~~P~~~~~~---------  278 (382)
T PRK14085        233 ---------GPGVRLAVEL-----------GA-ASVDHCTY--LTDADVDALAGSGTVAT--LLPGAEFST---------  278 (382)
T ss_pred             ---------ChHHHHHHHc-----------CC-CcHHHhCC--CCHHHHHHHHHcCCEEE--ECcHHHHhc---------
Confidence                     0112222221           21 12445554  22345666777775444  366532110         


Q ss_pred             ceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHH-HHHhcCCCHHHH
Q 013050          280 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQL  358 (450)
Q Consensus       280 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~gls~~~a  358 (450)
                              +  .....+.++++.|+.+++|||+.+..+..                   ..+..... .....+++++++
T Consensus       279 --------~--~~~~~~~~l~~aGv~v~lgsD~~~~~~~~-------------------~~~~~~~~~~~~~~~l~~~~a  329 (382)
T PRK14085        279 --------R--QPYPDARRLLDAGVTVALASDCNPGSSYT-------------------SSMPFCVALAVRQMGMTPAEA  329 (382)
T ss_pred             --------C--CCCchHHHHHHCCCcEEEEeCCCCCCChH-------------------HHHHHHHHHHHHhcCCCHHHH
Confidence                    0  11234677788999999999975432111                   01111122 234578999999


Q ss_pred             HHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCc
Q 013050          359 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE  394 (450)
Q Consensus       359 l~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~  394 (450)
                      ++++|.|||+++|+++.|+|++||.|||+++|.+..
T Consensus       330 l~~aT~~~A~~lg~~~~G~l~~G~~ADlvv~d~~~~  365 (382)
T PRK14085        330 VWAATAGGARALRRDDVGVLAVGARADLHVLDAPSH  365 (382)
T ss_pred             HHHHHHHHHHHcCCCCCCCcCCCCCCCEEEEcCCCC
Confidence            999999999999995589999999999999998753

>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=99.96  E-value=4.4e-28  Score=230.04  Aligned_cols=288  Identities=22%  Similarity=0.123  Sum_probs=176.4

Q ss_pred             CcEEecCCCEEeccceeeccccCCCCCCcc------cc-----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHH
Q 013050           29 GQVVDYGEAVIMPGLIDVHAHLDDPGRTEW------EG-----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV   97 (450)
Q Consensus        29 ~~viD~~g~~v~PG~iD~H~H~~~~~~~~~------~~-----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~   97 (450)
                      +++||+.|++|||||||+|+|+........      +.     .....+.++++||||+++++ +....    . +....
T Consensus         1 ~~vID~~g~~v~PGliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g-~~~~~----~-~~~~~   74 (342)
T cd01299           1 AQVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAG-GADYG----L-LRDAI   74 (342)
T ss_pred             CcEEeCCCCEECCCeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCC-CcchH----H-HHHHH
Confidence            368999999999999999999865422111      11     12467788999999999996 32211    1 22221


Q ss_pred             HHHhcCCceEEEEec-------------------------cccCCCccchHHHHHHHHcCCcEEEEecccCCC-----CC
Q 013050           98 DAAEKRIYVDVGFWG-------------------------GLVPENAYNASALEALLNAGVLGLKSFMCPSGI-----ND  147 (450)
Q Consensus        98 ~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~  147 (450)
                      ..... ...++...+                         .......+..+.++++.+.|+..+|.|......     .+
T Consensus        75 ~~g~~-~gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~  153 (342)
T cd01299          75 DAGLI-PGPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPP  153 (342)
T ss_pred             HcCCc-cCCceeecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCc
Confidence            11111 011111111                         111122234677888889999999999754211     11


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCC
Q 013050          148 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP  227 (450)
Q Consensus       148 ~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~  227 (450)
                      .+..+.+.+.++++.|+++|+++.+|+.....                                +..+++.         
T Consensus       154 ~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~--------------------------------i~~~l~~---------  192 (342)
T cd01299         154 DTQFSEEELRAIVDEAHKAGLYVAAHAYGAEA--------------------------------IRRAIRA---------  192 (342)
T ss_pred             ccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHH--------------------------------HHHHHHc---------
Confidence            13578899999999999999999999954321                                2333322         


Q ss_pred             CCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCC-------ChhhHHHHHHHH
Q 013050          228 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIR-------DAANKEKLWEAL  300 (450)
Q Consensus       228 ~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~  300 (450)
                        +.. .+.|+..  -..+.++.+++.|+.+..  ++..........     .....++..       .......+..+.
T Consensus       193 --G~~-~i~H~~~--~~~~~~~~l~~~g~~~~~--t~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~  260 (342)
T cd01299         193 --GVD-TIEHGFL--IDDETIELMKEKGIFLVP--TLATYEALAAEG-----AAPGLPADSAEKVALVLEAGRDALRRAH  260 (342)
T ss_pred             --CCC-EEeecCC--CCHHHHHHHHHCCcEEeC--cHHHHHHHHhhc-----cccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              222 3566654  234567777788765543  554221100000     000000000       112234567788


Q ss_pred             hcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccc
Q 013050          301 MDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIA  379 (450)
Q Consensus       301 ~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~  379 (450)
                      +.|+.+++|||....+..              +     ..+...+..+.+.++|++++++++|.|||+++|+ ++.|+|+
T Consensus       261 ~~Gv~v~~GTD~~~~~~~--------------~-----~~~~~e~~~~~~~~~~~~~al~~~T~~~a~~~g~~~~~G~i~  321 (342)
T cd01299         261 KAGVKIAFGTDAGFPVPP--------------H-----GWNARELELLVKAGGTPAEALRAATANAAELLGLSDELGVIE  321 (342)
T ss_pred             HcCCeEEEecCCCCCCCc--------------h-----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCccCCcceEC
Confidence            899999999996421000              0     0122233445567899999999999999999999 6799999


Q ss_pred             cCCCccEEEEeCCCce
Q 013050          380 IGNHADLVVWEPEAEF  395 (450)
Q Consensus       380 ~G~~ADlvv~d~~~~~  395 (450)
                      +||.|||+|+|.|+..
T Consensus       322 ~G~~ADlvvl~~~pl~  337 (342)
T cd01299         322 AGKLADLLVVDGDPLE  337 (342)
T ss_pred             CCCcCCEEEECCChhh
Confidence            9999999999987643

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>PRK07572 cytosine deaminase; Validated

Probab=99.96  E-value=3.3e-26  Score=222.16  Aligned_cols=345  Identities=18%  Similarity=0.179  Sum_probs=193.2

Q ss_pred             eeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC---CCC----------------------cc
Q 013050            4 RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT----------------------EW   58 (450)
Q Consensus         4 ~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~---~~~----------------------~~   58 (450)
                      .+|+|++|+|++|++..+.    ...+++|++|++|+|||||+|+|+...   +..                      ..
T Consensus        18 ~~i~i~~g~I~~v~~~~~~----~~~~~id~~g~~~~PG~id~h~h~~~~~~~~~~~~~~~g~l~e~l~~~~~~~~~~t~   93 (426)
T PRK07572         18 IDIGIAGGRIAAVEPGLQA----EAAEEIDAAGRLVSPPFVDPHFHMDATLSYGLPRVNASGTLLEGIALWGELKPLLTQ   93 (426)
T ss_pred             EEEEEECCEEEEecCCCCC----CcCceEeCCCCEEcccceehhhCcchhhccCCCCCCCCCCHHHHHHHHHHHHhcCCH
Confidence            4799999999999976432    245799999999999999999999542   110                      00


Q ss_pred             cc----hHHHHHHHHhCCceEEEeCCCCC-CCCCCcHHHHHHHHHHHhcCCceEEEEeccccC----CCccchHHHHHHH
Q 013050           59 EG----FPSGTKAAAAGGITTLIDMPLNS-DPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP----ENAYNASALEALL  129 (450)
Q Consensus        59 ~~----~~~~~~~~~~~GvT~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  129 (450)
                      ++    ....+++++++|+|+++++. .. .+.......+.........  .+...... +..    ......+.+++.+
T Consensus        94 edl~~~a~~~~~e~l~~G~Ttvrd~~-d~~~~~~~~~~a~~~~~~~~~~--~~~~~~~a-~~~~g~~~~~~~~~~~~~~l  169 (426)
T PRK07572         94 EALVERALRYCDWAVARGLLAIRSHV-DVCDPRLLAVEALLEVRERVAP--YLDLQLVA-FPQDGVLRSPGAVDNLERAL  169 (426)
T ss_pred             HHHHHHHHHHHHHHHHcCcccEeecc-ccCCCcccHHHHHHHHHHHhhc--cceEEEEe-ccChhhccCccHHHHHHHHH
Confidence            11    22345588999999999974 21 2211222222222221111  22221111 111    1122355677777


Q ss_pred             HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHH
Q 013050          130 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE  209 (450)
Q Consensus       130 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  209 (450)
                      +.|+..+.... +.  ........+.++.++++|+++|+++.+|+.+...                        +.   .
T Consensus       170 ~~g~d~iGg~p-~~--~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~------------------------~~---~  219 (426)
T PRK07572        170 DMGVDVVGGIP-HF--ERTMADGAESVRLLCEIAAERGLRVDMHCDESDD------------------------PL---S  219 (426)
T ss_pred             HcCCCEEeCCC-CC--ccccchHHHHHHHHHHHHHHcCCCeEEEECCCCC------------------------hh---H
Confidence            78875542211 10  0001122489999999999999999999943221                        00   0


Q ss_pred             HHHHHHHHHHHhhccCCCCCCceEEEEecCCh-----hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEc
Q 013050          210 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCA  284 (450)
Q Consensus       210 ~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (450)
                      ..++...+...+.   +.  ..++.+.|+...     ....+.++.+++.|+.+..  ||..........       ...
T Consensus       220 ~~~~~~~~~~~~~---G~--~~~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv~--~P~~n~~l~~~~-------~~~  285 (426)
T PRK07572        220 RHIETLAAETQRL---GL--QGRVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAIA--NPLINITLQGRH-------DTY  285 (426)
T ss_pred             HHHHHHHHHHHHh---CC--CCCEEEEccchhhcCCHHHHHHHHHHHHHcCCeEEE--CchhhhhhcCCC-------CCC
Confidence            1122223333222   11  125777887532     1345677888888876665  654321110000       000


Q ss_pred             CCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCC----HHHHHH
Q 013050          285 PPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVT----LEQLAS  360 (450)
Q Consensus       285 ~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls----~~~al~  360 (450)
                      | .  ......+.++++.|+.+++|||+.. ++..          ..++....+.    ........+++    +.++++
T Consensus       286 ~-~--~~g~~~v~~l~~~GV~v~lGtD~~~-~~~~----------~~~~~~~~e~----~~~~~~~~~~~~~~~l~~~l~  347 (426)
T PRK07572        286 P-K--RRGMTRVPELMAAGINVAFGHDCVM-DPWY----------SLGSGDMLEV----AHMGLHVAQMTGQDAMRACFD  347 (426)
T ss_pred             C-C--CCCCcCHHHHHHCCCcEEEecCCCC-CCCC----------CCCCCCHHHH----HHHHHHHHcCCCHHHHHHHHH
Confidence            1 0  0122335677889999999999641 1100          0001111111    11111222343    356677


Q ss_pred             HHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCc
Q 013050          361 WWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN  437 (450)
Q Consensus       361 ~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~  437 (450)
                      ++|.|||++||+++.| |++||+||||++|...+..                  ......++..||++|++|+....
T Consensus       348 ~aT~~~A~~lgl~~~g-i~~G~~ADlvl~d~~~p~e------------------~i~~~~~~~~V~~~G~~v~~~~~  405 (426)
T PRK07572        348 AVTVNPARIMGLEGYG-LEPGCNADLVLLQARDPIE------------------AIRLRAARLAVIRRGKVIARTPP  405 (426)
T ss_pred             HhhcchHHhhCCCCcC-CCCCCcCCEEEEeCCCHHH------------------HHHhcCCceEEEECCEEEeccCC
Confidence            9999999999995467 9999999999999532111                  11111368899999999988744

>PLN02599 dihydroorotase

Probab=99.96  E-value=3.7e-26  Score=213.01  Aligned_cols=298  Identities=20%  Similarity=0.212  Sum_probs=225.4

Q ss_pred             CEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC--CceEEEEeccc
Q 013050           37 AVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGL  114 (450)
Q Consensus        37 ~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  114 (450)
                      .+.+|---|+|+|+.+..      +....-...+.|+|++++|| +..|.....+.+..+.+++...  ..+++.+++.+
T Consensus        22 ~~~~~~~~d~h~hlr~~~------~~~~~~~~~~gg~t~~i~MP-n~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~l   94 (364)
T PLN02599         22 ELTITRPDDWHLHLRDGA------KLAAVVPHSARHFGRAIVMP-NLKPPVTTTARALAYRERIMKALPPGSSFEPLMTL   94 (364)
T ss_pred             eEEecCCcceeeEccCcH------HHHhhhHHhcCCcCEEEECC-CCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEEE
Confidence            367999999999998754      44555566889999999999 8888899999998888888766  45788888666


Q ss_pred             cCCCccchHHHHHHHHcCCc-EEEEecccCCCC-CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCC
Q 013050          115 VPENAYNASALEALLNAGVL-GLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD  192 (450)
Q Consensus       115 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~  192 (450)
                      ........+++.++.+.|+. ++|.|+...+.+ +....+.+.+.++++.+++.|+++.+|+++.....          +
T Consensus        95 ~lt~~~~l~Ei~~~~~~Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~~~~----------~  164 (364)
T PLN02599         95 YLTDNTTPEEIKAAKASGVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTDPSV----------D  164 (364)
T ss_pred             ecCCCCCHHHHHHHHHCCCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCcccc----------c
Confidence            33222456788888889999 999986533211 22233468999999999999999999998744200          0


Q ss_pred             ccccccccCCCChHHHHHHHHHHH--HHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccc
Q 013050          193 TRSYSTYLKTRPPSWEEAAIRELL--TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS  270 (450)
Q Consensus       193 ~~~~~~~~~~~p~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~  270 (450)
                      ..           ..+...+.+++  .+++       +++.++|+.|+++. ++++.+++++. + .+++++||||+.++
T Consensus       165 ~~-----------~~E~~~i~r~l~~~la~-------~~g~kI~i~HiSt~-~~ve~v~~ak~-~-~vtae~tpHhL~l~  223 (364)
T PLN02599        165 IF-----------DREKVFIDTILAPLVQK-------LPQLKIVMEHITTM-DAVEFVESCGD-G-NVAATVTPQHLLLN  223 (364)
T ss_pred             cc-----------ccHHHHHHHHHHHHHHh-------ccCCeEEEEecChH-HHHHHHHhccC-C-CEEEEecHHHHhcC
Confidence            00           01223455666  3555       45999999999999 99999998774 3 79999999999999


Q ss_pred             ccccC--CCCCceEEcCCCCChhhHHHHHHHHhcCCe-eEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH
Q 013050          271 AEEIP--DGDTRFKCAPPIRDAANKEKLWEALMDGHI-DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY  347 (450)
Q Consensus       271 ~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  347 (450)
                      .+.+.  .++..++++||+|...+++.+|+++..|.. ++++|||.|+....+..+   +.  ..|+......++.+...
T Consensus       224 ~~~~~~~~~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~~~~K~~~---~g--~~Gi~~~~~~l~~l~~~  298 (364)
T PLN02599        224 RNALFQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKEAS---CG--CAGIYSAPVALSLYAKA  298 (364)
T ss_pred             HHHHhccCCCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCChHHhcCC---CC--CCCcccHHHHHHHHHHH
Confidence            88765  346679999999999999999999999996 899999999987765321   11  12334433357765555


Q ss_pred             HHhcCCCHHHHHHHHhhchhHHhCCC-CCCcc
Q 013050          348 GRKYGVTLEQLASWWSERPAKLAGQV-SKGAI  378 (450)
Q Consensus       348 ~~~~gls~~~al~~aT~~~A~~lg~~-~~G~I  378 (450)
                      +.+.| ++++++++.+.|||+++|++ +.|+|
T Consensus       299 ~~~~g-~l~~l~~~~S~npA~~~gL~~~kg~i  329 (364)
T PLN02599        299 FEEAG-ALDKLEAFTSFNGPDFYGLPRNTSTI  329 (364)
T ss_pred             HHhcC-CHHHHHHHHhHHHHHHhCCCCCCCeE
Confidence            55556 99999999999999999994 56764

>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=99.96  E-value=3.7e-26  Score=215.46  Aligned_cols=296  Identities=21%  Similarity=0.289  Sum_probs=185.7

Q ss_pred             eEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCC
Q 013050            5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSD   84 (450)
Q Consensus         5 ~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~   84 (450)
                      +|+|+||+|++|++....+   .+.++||++|++|+|||||+|+|+..++..+.   ....+.+++.|+||+++++ +..
T Consensus         1 ~i~i~~g~I~~i~~~~~~~---~~~~~id~~g~~v~PG~iD~H~H~~~~g~~~~---~~~~~~a~~~GvTtvvd~~-~~~   73 (338)
T cd01307           1 DVAIENGKIAAVGAALAAP---AATQIVDAGGCYVSPGWIDLHVHVYQGGTRYG---DRPDMIGVKSGVTTVVDAG-SAG   73 (338)
T ss_pred             CEEEECCEEEEccCCCCCC---CCCeEEECCCCEEecCeEEeeecCCCCCcccC---CCHhHHHHcCceeEEEeCC-CCC
Confidence            6899999999999854321   24689999999999999999999988775443   3477788999999999997 443


Q ss_pred             CCCCcHHHHHHHH-HHHhc--CCceEEEEeccccCCCcc-----chHHHHHH---HHcCCcEEEEecccCCCCCCCCCCH
Q 013050           85 PSTISTETLKLKV-DAAEK--RIYVDVGFWGGLVPENAY-----NASALEAL---LNAGVLGLKSFMCPSGINDFPMTNA  153 (450)
Q Consensus        85 ~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~  153 (450)
                      +  .....+.... +....  ...+++..++........     ..+.+.++   ...|+.+++.++......   ....
T Consensus        74 ~--~~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~e~~~gi~gik~~~~~~~~~---~~~~  148 (338)
T cd01307          74 A--DNIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDPDNIDEDAVVAAAREYPDVIVGLKARASKSVVG---EWGI  148 (338)
T ss_pred             C--CCHHHHHHHHHHhhhceEEEEEeeeccccccccccCChhHCCHHHHHHHHHHCcCcEEEEEEEeeccccc---ccCC
Confidence            3  4444433333 33333  345666666654332211     12333333   346888999887543321   1233


Q ss_pred             HHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceE
Q 013050          154 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL  233 (450)
Q Consensus       154 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  233 (450)
                      ..+.+.++.+++.|+++.+|+++...                               .+..++.+.+.        +.  
T Consensus       149 ~~l~~~~~~a~~~~~pi~vH~~~~~~-------------------------------~~~~~~~~l~~--------g~--  187 (338)
T cd01307         149 KPLELAKKIAKEADLPLMVHIGSPPP-------------------------------ILDEVVPLLRR--------GD--  187 (338)
T ss_pred             cHHHHHHHHHHHcCCCEEEEeCCCCC-------------------------------CHHHHHHHhcC--------CC--
Confidence            44788899999999999999965321                               12333333332        21  


Q ss_pred             EEEecCChh---------HHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCC
Q 013050          234 HIVHLSDAS---------SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH  304 (450)
Q Consensus       234 ~~~h~~~~~---------~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  304 (450)
                      .+.|+....         ...+.++++.+.|..  .+++...                      .........++++.|+
T Consensus       188 ~~~H~~~g~~~~~~~~~~~~~~~~~~~~~~G~~--~d~~~G~----------------------~~~~~~~~~~l~~~G~  243 (338)
T cd01307         188 VLTHCFNGKPNGIVDEEGEVLPLVRRARERGVI--FDVGHGT----------------------ASFSFRVARAAIAAGL  243 (338)
T ss_pred             EEEeccCCCCCCCCCCCCcHHHHHHHHHhCCEE--EEeCCCC----------------------CchhHHHHHHHHHCCC
Confidence            234444320         113566777777643  3222100                      0001112334566776


Q ss_pred             -eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCC
Q 013050          305 -IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNH  383 (450)
Q Consensus       305 -~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~  383 (450)
                       ...+++|......                .......+...+..+...|++++++++++|.|||++|++++.|+|++|+.
T Consensus       244 ~~~~lstD~~~~~~----------------~~~p~~~l~~~l~~l~~~gi~~ee~~~~~T~NpA~~lgl~~~G~l~~G~~  307 (338)
T cd01307         244 LPDTISSDIHGRNR----------------TNGPVYALATTLSKLLALGMPLEEVIEAVTANPARMLGLAEIGTLAVGYD  307 (338)
T ss_pred             CCeeecCCccccCC----------------CCCccccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCCccCCCCc
Confidence             4578999632110                01111223344444556799999999999999999999966899999999


Q ss_pred             ccEEEEeCCC
Q 013050          384 ADLVVWEPEA  393 (450)
Q Consensus       384 ADlvv~d~~~  393 (450)
                      |||++++.+.
T Consensus       308 ad~~v~~~~~  317 (338)
T cd01307         308 ADLTVFDLKD  317 (338)
T ss_pred             CCEEEEeCCC
Confidence            9999999664

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>PRK10027 cryptic adenine deaminase; Provisional

Probab=99.95  E-value=9.6e-26  Score=221.80  Aligned_cols=310  Identities=18%  Similarity=0.124  Sum_probs=186.8

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      ..++|+|++|+|++|++..+..   .+.++||++|++|+|||||+|+|+..+.. +.+.+   .+.++.+|+|++++.| 
T Consensus        48 ~~~~V~I~~GrI~~Vg~~~~~~---~~~~vIDa~G~~v~PGlIDaHvHiess~~-~p~~~---a~aal~~G~TtVv~dP-  119 (588)
T PRK10027         48 ISGPIVIKGRYIAGVGAEYADA---PALQRIDARGATAVPGFIDAHLHIESSMM-TPVTF---ETATLPRGLTTVICDP-  119 (588)
T ss_pred             EeeEEEEECCEEEEeCCCCCCC---CCCeEEECCCCEEEECeEeccccCCcccC-CHhHH---HHHHHhCceEEEEcCC-
Confidence            3578999999999997643211   24689999999999999999999987643 22333   4467899999999998 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEE--e--ccccC--CCc---cchHHHHHHHH-cCCcEEEEecccCCCCCCCCC
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGF--W--GGLVP--ENA---YNASALEALLN-AGVLGLKSFMCPSGINDFPMT  151 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~--~~~---~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~  151 (450)
                      ...+.....+.+....+..... +..+.+  .  +....  ++.   -..++++++.+ .++.++...+.+++.   -..
T Consensus       120 hei~nv~g~~gi~~~l~~a~~~-p~~~~~~~ps~vpa~~~~Et~Ga~~~~~~~~~~l~~~~v~glgEvMn~~~V---~~~  195 (588)
T PRK10027        120 HEIVNVMGEAGFAWFARCAEQA-RQNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQVTGLAEMMDYPGV---ISG  195 (588)
T ss_pred             CCcccCCCHHHHHHHHHHhhhC-CCeeEEeecccCcCCcccccCCCcCCHHHHHHHhcCCCceeEEeccCcccc---ccC
Confidence            6766667777777766655432 232222  1  11111  111   13567777766 688899998887654   123


Q ss_pred             CHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCc
Q 013050          152 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA  231 (450)
Q Consensus       152 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~  231 (450)
                      +.+.+.++. .+  +++.+..|+.....                              ..+..-+   . +       |.
T Consensus       196 d~~~~~ki~-~~--~~~~idGH~p~l~g------------------------------~~L~ay~---a-a-------Gi  231 (588)
T PRK10027        196 QNALLDKLD-AF--RHLTLDGHCPGLGG------------------------------KELNAYI---A-A-------GI  231 (588)
T ss_pred             CHHHHHHHH-Hh--CCCceECCCCCCCh------------------------------HHHHHHH---H-c-------CC
Confidence            455555555 44  89999999953321                              0011110   0 0       11


Q ss_pred             eEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhc--CCeeEEc
Q 013050          232 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD--GHIDMLS  309 (450)
Q Consensus       232 ~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~g  309 (450)
                        .-.|-+.  . .+...+-.++|..+..-  ....                      ..+.+.+...+..  .-.++++
T Consensus       232 --~sDHE~~--t-~eea~eklr~Gm~v~iR--egS~----------------------~~nl~~l~~~~~~~~~~~~~l~  282 (588)
T PRK10027        232 --ENCHESY--Q-LEEGRRKLQLGMSLMIR--EGSA----------------------ARNLNALAPLINEFNSPQCMLC  282 (588)
T ss_pred             --CCCcccC--C-HHHHHHHHHCCCEEEEe--CCcc----------------------ccCHHHHHHHhhccCCCeEEEE
Confidence              1122221  1 12222222334322210  0000                      0011111111111  1234688


Q ss_pred             CCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh-cCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEE
Q 013050          310 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVV  388 (450)
Q Consensus       310 tD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv  388 (450)
                      ||.........   .              -.+....+.+.+ .|+++++|++|+|.|||+++|+++.|+|+||+.|||++
T Consensus       283 TDd~~~~~l~~---~--------------Ghi~~~vr~av~~~Gi~~~~Ai~mAT~nPA~~lgl~d~G~IapG~~ADlvv  345 (588)
T PRK10027        283 TDDRNPWEIAH---E--------------GHIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLNHLGLLAPGKQADIVL  345 (588)
T ss_pred             cCCCChHHHHh---c--------------cCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCcccCCCCcCCEEE
Confidence            88653221111   0              013333444444 89999999999999999999996589999999999999


Q ss_pred             EeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc
Q 013050          389 WEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA  439 (450)
Q Consensus       389 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~  439 (450)
                      +|...        +                 .++..||++|++|+++ +.+
T Consensus       346 ld~l~--------~-----------------~~v~~v~~~G~~v~~~-~~~  370 (588)
T PRK10027        346 LSDAR--------K-----------------VTVQQVLVKGEPIDAQ-TLQ  370 (588)
T ss_pred             EccCC--------C-----------------ceEEEEEECCEEeecc-ccc
Confidence            99321        0                 2688999999999998 654

>PRK06846 putative deaminase; Validated

Probab=99.95  E-value=1.8e-25  Score=216.06  Aligned_cols=335  Identities=15%  Similarity=0.123  Sum_probs=194.0

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC-cc----------c------------
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-EW----------E------------   59 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~-~~----------~------------   59 (450)
                      ..+|.|++|+|++|++....+.  .+.+++|++|++|+|||||+|+|+..+... .+          +            
T Consensus        31 ~~~i~i~~g~I~~i~~~~~~~~--~~~~~id~~g~~v~Pg~iD~H~H~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~  108 (410)
T PRK06846         31 LCTLEIQDGKIVAIRPNKQVPD--ATLPTYDANGLLMLPAFREMHIHLDKTYYGGPWKACRPAKTIQDRIELEQKELPEL  108 (410)
T ss_pred             eEEEEEECCEEEEeecCCCCCC--CCCceEeCCCCEEecCEEeeeecccchhhccchhhcCCcccHHHHHhhhhhhHHHh
Confidence            4689999999999997532211  246899999999999999999999753211 00          0            


Q ss_pred             --ch----HHHHHHHHhCCceEEEeCCCCCCCCC--CcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHc
Q 013050           60 --GF----PSGTKAAAAGGITTLIDMPLNSDPST--ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNA  131 (450)
Q Consensus        60 --~~----~~~~~~~~~~GvT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (450)
                        ..    ......++++|+|+++++. ...+..  ...+.+..............+..+...........+.+++..+.
T Consensus       109 ~~~~~~~a~~~l~~~~~~Gtt~~r~~v-~~~~~~~~~~~~a~~e~l~e~~~~v~~~~~a~~~~g~~~~~~~~lL~~al~~  187 (410)
T PRK06846        109 LPTTQERAEKLIELLQSKGATHIRSHC-NIDPVIGLKNLENLQAALERYKDGFTYEIVAFPQHGLLRSNSEPLMREAMKM  187 (410)
T ss_pred             HHHHHHHHHHHHHHHHhCCccEEEEEE-eeCcccccchHHHHHHHHHHhhCcceEEEEeccCcccCCccHHHHHHHHHHc
Confidence              00    0224456778999998885 333321  11222222222222222222222211000012334678888888


Q ss_pred             CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHH
Q 013050          132 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA  211 (450)
Q Consensus       132 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  211 (450)
                      |+..++.+. +.   .....+.+.+.++++.|+++|+++.+|..+...                           .....
T Consensus       188 Ga~~i~gl~-p~---~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~---------------------------~~~~~  236 (410)
T PRK06846        188 GAHLVGGVD-PA---SVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGP---------------------------LGVAT  236 (410)
T ss_pred             CCCEEeCCC-Cc---cCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCC---------------------------hhHHH
Confidence            887555331 11   112466789999999999999999999954321                           01112


Q ss_pred             HHHHHHHHHhhccCCCCCCceEEEEecCC-----hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCC
Q 013050          212 IRELLTVAKDTRTDGPAEGAHLHIVHLSD-----ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP  286 (450)
Q Consensus       212 ~~~~~~l~~~~~~~~~~~~~~~~~~h~~~-----~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (450)
                      +++.++.+.+..   .  ..++++.|+..     ..+..+.++.+++.|..+..  +..                     
T Consensus       237 ~~~~~~~~~~~g---l--~~~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v~~--~~~---------------------  288 (410)
T PRK06846        237 IKYLVETTEEAQ---W--KGKVTISHAFALGDLNEEEVEELAERLAAQGISITS--TVP---------------------  288 (410)
T ss_pred             HHHHHHHHHHhC---C--CCCEEEEecchhhcCCHHHHHHHHHHHHHcCCeEEE--eCC---------------------
Confidence            344555555441   1  12688888863     11333445678888876653  110                     


Q ss_pred             CCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCC----CHHHHHHHH
Q 013050          287 IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV----TLEQLASWW  362 (450)
Q Consensus       287 ~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gl----s~~~al~~a  362 (450)
                      +.  .....+.++++.|+.+++|||+.. +...           +.+.......+..   .....++    +..++++|+
T Consensus       289 ~~--~g~~p~~~l~~~Gv~v~lGtD~~~-~~~~-----------p~~~~d~~~~~~~---~~~~~~~~~~~~~~~~l~~~  351 (410)
T PRK06846        289 IG--RLHMPIPLLHDKGVKVSLGTDSVI-DHWS-----------PFGTGDMLEKANL---LAELYRWSDERSLSRSLALA  351 (410)
T ss_pred             CC--CCCCCHHHHHhCCCeEEEecCCCC-CCCc-----------CCCCCCHHHHHHH---HHHHhcCCCHHHHHHHHHHH
Confidence            00  001124567888999999999641 1111           0011111111111   1111122    345789999


Q ss_pred             hhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050          363 SERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE  435 (450)
Q Consensus       363 T~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~  435 (450)
                      |.++ +.+++ +..|+|+|||.|||||+|.+.+...      ..            ....|..||++|++||..
T Consensus       352 T~~a-~~l~~~~~~G~l~~G~~ADlvlld~~~~~~~------~~------------~~~~v~~v~~~G~~v~~~  406 (410)
T PRK06846        352 TGGV-LPLNDEGERVWPKVGDEASFVLVDASCSAEA------VA------------RQSPRTAVFHKGQLVAGS  406 (410)
T ss_pred             cCCc-cccccCCCccCCCCCCcccEEEEeCCChHHH------HH------------hcCCceEEEECCEEEeee
Confidence            9984 56777 6689999999999999997642211      00            113789999999999975

>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.95  E-value=3.1e-27  Score=212.63  Aligned_cols=354  Identities=17%  Similarity=0.152  Sum_probs=195.0

Q ss_pred             ceeEEEeC-CEEEEeccCCCCCCCC-------CCCcEEecCCCEEeccceeecccc-CCC-----C----CCcc------
Q 013050            3 KRAVEIKE-GNIISIVSEEDWPRNS-------KTGQVVDYGEAVIMPGLIDVHAHL-DDP-----G----RTEW------   58 (450)
Q Consensus         3 ~~~V~I~~-g~I~~Ig~~~~~~~~~-------~~~~viD~~g~~v~PG~iD~H~H~-~~~-----~----~~~~------   58 (450)
                      +..+.|.+ |||+.|++......+.       +..++++..|.++||||||+|+|. ...     +    ...|      
T Consensus        27 ~~sl~Vd~~GKi~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~mPGfVdtH~H~a~q~~~s~~g~d~pll~wl~~~~f  106 (439)
T KOG3968|consen   27 GSSLGVDDTGKIVFIGKAYFDENKLKGEGVEKENTKIKLSSGHFLMPGFVDTHIHPAHQFAMSGAGTDMPLLQWLGKYTF  106 (439)
T ss_pred             CcceeecCCccEEEeeccccchhhhcccccccccceeeecCCcEEecceeecccchHhhhhhhccccCcHHHHHhhccee
Confidence            45567877 9999999865432111       345788999999999999999993 110     1    0001      


Q ss_pred             -------------cchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccc---cCCC----
Q 013050           59 -------------EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL---VPEN----  118 (450)
Q Consensus        59 -------------~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----  118 (450)
                                   +.+....++++++|+|++..+.  + -..++...+.........+..+.......-   .+..    
T Consensus       107 ~le~~~~~~e~~~q~~~~vv~~mL~~GTTt~~~f~--~-~~~~s~~ll~~~~~~~G~R~~igkv~m~~~~~~~p~~~~~~  183 (439)
T KOG3968|consen  107 PLEATFTNEEDARQVYQRVVKEMLRAGTTTVEYFS--T-LHLDSELLLARAAIRAGQRALIGKVCMDCNAHAVPKGVETT  183 (439)
T ss_pred             ecchhhhhHHHHHHHHHHHHHHHHHcCceehhhhh--c-cCchhHHHHHHHHHHhCCceeeeeehhccCCCCCCccchhH
Confidence                         1244456689999999998774  1 112222233333333333333333222111   1111    


Q ss_pred             ccchHHHHHHH-------HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC-ChhhhhhhhhhccCc
Q 013050          119 AYNASALEALL-------NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE-MEKGSERHVKLEDDT  190 (450)
Q Consensus       119 ~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~-~~~~~~~~~~~~~~~  190 (450)
                      +...+...+++       +.+......   +   .-.+.++.+.+.+..++|+..++++..|.. ....++....-.   
T Consensus       184 E~si~~t~~~i~~~~~~~~~~~~~~vt---~---~fa~~c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff---  254 (439)
T KOG3968|consen  184 EESIESTEDLIPKLEKLKREKVNPIVT---P---RFAASCSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFF---  254 (439)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCCccc---c---cccCCCcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhh---
Confidence            11122222222       222211111   0   111357778888888999999999999983 333332221111   


Q ss_pred             CCccccccccCCCChHH-HHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcc
Q 013050          191 LDTRSYSTYLKTRPPSW-EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF  269 (450)
Q Consensus       191 ~~~~~~~~~~~~~p~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~  269 (450)
                                   |+.. .....+.-..+..+        -.-.|..|+++  +.++.+.+   +|..+..  ||-....
T Consensus       255 -------------~~~~~y~~~yd~~~lL~~k--------tvlaH~~hl~d--~ei~~l~k---~g~svsh--CP~Sn~~  306 (439)
T KOG3968|consen  255 -------------PEKLSYTDVYDKGGLLTEK--------TVLAHLEHLSD--EEIELLAK---RGCSVSH--CPTSNSI  306 (439)
T ss_pred             -------------hhcccchHHHHHhcccchH--------hHhhhheecCc--hhHHHHHh---cCCceEE--CCcchhh
Confidence                         1100 01112222222211        34467888887  55555444   4544443  6643211


Q ss_pred             cccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-
Q 013050          270 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-  348 (450)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-  348 (450)
                      -                   .....++.++++.|+.+.+|||.++.+....++              ....+...+... 
T Consensus       307 L-------------------~sG~~~vr~lL~~~v~VgLGtDv~~~s~l~a~r--------------~A~~~s~hL~~~~  353 (439)
T KOG3968|consen  307 L-------------------GSGIPRVRELLDIGVIVGLGTDVSGCSILNALR--------------QAMPMSMHLACVL  353 (439)
T ss_pred             h-------------------ccCCccHHHHHhcCceEeecCCccccccHHHHH--------------HHHHHHHHHHhcc
Confidence            1                   011223457799999999999987543322211              011111111111 


Q ss_pred             HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEee---EEEE
Q 013050          349 RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG---KVLA  424 (450)
Q Consensus       349 ~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~  424 (450)
                      ...++|+++++.+||.|||++||+ +..|++++||++|++++|.+.+....     .............++.+   ++..
T Consensus       354 ~~~~Ls~~e~L~lATi~GA~aLg~d~~~Gs~eVGK~fDai~id~s~~~~~l-----~~~~~~~~lI~~~v~~g~drni~~  428 (439)
T KOG3968|consen  354 DVMKLSMEEALYLATIGGAKALGRDDTHGSLEVGKYFDAIIIDLSAPESPL-----YRFSGHHDLISKVVYNGDDRNIAE  428 (439)
T ss_pred             CcccCCHHHHHHHHhccchhhccCCCcccceecccccceEEEeCCCCcchh-----hhccchHHHHHHHHhcCCCCceEE
Confidence            236899999999999999999999 77999999999999999988742111     11110022222334444   8999


Q ss_pred             EEECCeEEEe
Q 013050          425 TISRGNLVYK  434 (450)
Q Consensus       425 v~v~G~~v~~  434 (450)
                      |||+|+.|++
T Consensus       429 V~V~Gk~v~~  438 (439)
T KOG3968|consen  429 VFVAGKLVKQ  438 (439)
T ss_pred             EEEccEEecc
Confidence            9999999976

>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=99.95  E-value=1.5e-25  Score=212.30  Aligned_cols=314  Identities=24%  Similarity=0.235  Sum_probs=177.4

Q ss_pred             CCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC----------cc-------------cchHHHHH
Q 013050           10 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT----------EW-------------EGFPSGTK   66 (450)
Q Consensus        10 ~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~----------~~-------------~~~~~~~~   66 (450)
                      ||||++|++....+   .+.++||++|++|+|||||+|+|++.....          .+             .-......
T Consensus         1 ~gkI~~i~~~~~~~---~~~~vid~~g~~v~Pg~id~h~h~~~~~~~~~~~~~d~~e~~~~~~p~~~~~d~~~~~~~~~~   77 (359)
T cd01309           1 DGKIVAVGAEITTP---ADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETDPVTPHVRAIDGINPDDEAFK   77 (359)
T ss_pred             CCEEEEEcCCCCCC---CCCeEEeCCCCEEcCcEEecccccCccccCCCcCcCCccccCCCCCceeEeecccCCCCHhHH
Confidence            79999999875533   367899999999999999999999643111          00             01233456


Q ss_pred             HHHhCCceEEEeCCCCCCCCCCcHH---HHH--HHHHHH-hcCCceEEEEecc-cc-CC----Cc-c---chHHHHHHHH
Q 013050           67 AAAAGGITTLIDMPLNSDPSTISTE---TLK--LKVDAA-EKRIYVDVGFWGG-LV-PE----NA-Y---NASALEALLN  130 (450)
Q Consensus        67 ~~~~~GvT~~~~~~~~~~~~~~~~~---~~~--~~~~~~-~~~~~~~~~~~~~-~~-~~----~~-~---~~~~~~~~~~  130 (450)
                      .++++|||++...| +.........   .+.  ...+.. .....+.+.+... .. ..    .+ .   ....+++...
T Consensus        78 ~a~~~GvT~~~v~p-~~~~~~gg~~~~i~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~~~~~~p~trmg~~~~lr~~~~  156 (359)
T cd01309          78 RARAGGVTTVQVLP-GSANLIGGQGVVIKTDGGTIEDMFIKAPAGLKMALGENPKRVYGGKGKEPATRMGVAALLRDAFI  156 (359)
T ss_pred             HHHhcCceEEEecC-CCCCcccceEEEEECCCCCHHHhcccCCceeEEecCCCCcccccccCCCccchHHHHHHHHHHHH
Confidence            88999999998876 2221111100   000  000111 1122222221100 00 00    00 0   0111111111


Q ss_pred             c----CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChH
Q 013050          131 A----GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS  206 (450)
Q Consensus       131 ~----g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  206 (450)
                      .    .....+ +....  .. +......+..+...++. .++|.+|+....                            
T Consensus       157 ~a~~y~~~~~~-~~~~~--~~-~~~~d~~l~~l~~~~~~-~~~v~vHa~~~~----------------------------  203 (359)
T cd01309         157 KAQEYGRKYDL-GKNAK--KD-PPERDLKLEALLPVLKG-EIPVRIHAHRAD----------------------------  203 (359)
T ss_pred             HHHHHHHHhhh-hhhcc--cC-CCCCCccHHHHHHHHcC-CeeEEEEeCCHH----------------------------
Confidence            0    000000 00000  00 01122233444444443 389999995432                            


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCC
Q 013050          207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP  286 (450)
Q Consensus       207 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (450)
                          .+..+++++++.       +.++.+.|+...   .+.++++++.++.+.+  +|.......            ...
T Consensus       204 ----~i~~~l~~~~e~-------g~~~~i~H~~~~---~~~~~~la~~gv~v~~--~P~~~~~~~------------~~~  255 (359)
T cd01309         204 ----DILTAIRIAKEF-------GIKITIEHGAEG---YKLADELAKHGIPVIY--GPTLTLPKK------------VEE  255 (359)
T ss_pred             ----HHHHHHHHHHHc-------CCCEEEECchhH---HHHHHHHHHcCCCEEE--Ccccccccc------------HHH
Confidence                367788888776       777888998752   5566777777876665  443211100            000


Q ss_pred             CCChhhHHHHHHHHhcC-CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 013050          287 IRDAANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSER  365 (450)
Q Consensus       287 ~~~~~~~~~l~~~~~~g-~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~  365 (450)
                        ..........+++.| +.++++||+.... ..                    .+..........+++.+++++++|.|
T Consensus       256 --~~~~~~~~~~l~~aGGv~valgsD~~~~~-~~--------------------~l~~~~~~a~~~gl~~~~al~~~T~n  312 (359)
T cd01309         256 --VNDAIDTNAYLLKKGGVAFAISSDHPVLN-IR--------------------NLNLEAAKAVKYGLSYEEALKAITIN  312 (359)
T ss_pred             --hhcchhhHHHHHHcCCceEEEECCCCCcc-ch--------------------hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence              011123345667787 9999999973211 00                    12222233456789999999999999


Q ss_pred             hhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEE
Q 013050          366 PAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY  433 (450)
Q Consensus       366 ~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~  433 (450)
                      ||+++|+ ++.|+|++|+.|||||+|.++.. .                     ..+|..||++|++||
T Consensus       313 ~A~~lg~~~~~G~l~~G~~ADlvv~d~dpl~-~---------------------~~~v~~v~i~G~~v~  359 (359)
T cd01309         313 PAKILGIEDRVGSLEPGKDADLVVWNGDPLE-P---------------------TSKPEQVYIDGRLVY  359 (359)
T ss_pred             HHHHhCCCCCcccCCCCCccCEEEECCCccc-c---------------------cCcccEEEECCEEeC
Confidence            9999999 66899999999999999977411 0                     137899999999986

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional

Probab=99.95  E-value=4.3e-25  Score=208.90  Aligned_cols=336  Identities=16%  Similarity=0.127  Sum_probs=173.7

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCC-------CcccchHHHHHHHHhCCceE
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR-------TEWEGFPSGTKAAAAGGITT   75 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~-------~~~~~~~~~~~~~~~~GvT~   75 (450)
                      .++|+|+||+|++|++..+.+   .+.++||++|++|+|||||+|+|......       ...+.+....+.++++|||+
T Consensus        18 ~~~v~IedgkI~~I~~~~~~~---~~~~~ID~~G~~l~PG~ID~HvHG~~g~~~~~~~~~~~~~~l~~~~~~~~~~GvTt   94 (382)
T PRK11170         18 DHAVVIADGLIEAVCPVAELP---PGIEQRDLNGAILSPGFIDLQLNGCGGVQFNDTAEAISVETLEIMQKANEKSGCTS   94 (382)
T ss_pred             CCEEEEECCEEEEecCCccCC---CCCeEEeCCCCEEccceeeeeecCccCcccccCccCCCHHHHHHHHHHHHhcCEeE
Confidence            468999999999998754322   24579999999999999999999753321       12345667777889999999


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHH
Q 013050           76 LIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASH  155 (450)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  155 (450)
                      ++++. .+.+.......+....+.........+++|......++.         +.|+-.-.. +        ...+.++
T Consensus        95 ~lpT~-it~~~~~~~~~l~~~~~~~~~~~a~~~G~HlEGPfi~~~---------~~Gah~~~~-~--------~~p~~~~  155 (382)
T PRK11170         95 FLPTL-ITSSDELMKQAVRVMREYLAKHPNQALGLHLEGPYLNLV---------KKGTHNPEF-I--------RKPDAEM  155 (382)
T ss_pred             Eeeec-cCCCHHHHHHHHHHHHHHHhcCCCeEEEEEeecCCCCcc---------cCCCCCHHH-h--------cCcCHHH
Confidence            99986 443333333334444333222233444444322222210         111100000 0        0122333


Q ss_pred             HHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEE
Q 013050          156 IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHI  235 (450)
Q Consensus       156 l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  235 (450)
                      ++...+.+  ..+++..-+.+..                                . .++++.+.+.       |+.+.+
T Consensus       156 ~~~~~~~~--~~i~~iTlAPE~~--------------------------------~-~~~i~~l~~~-------gi~vs~  193 (382)
T PRK11170        156 VDFLCENA--DVITKVTLAPEMV--------------------------------D-AEVIRKLVEA-------GIVVSA  193 (382)
T ss_pred             HHHHHhcc--CCEEEEEECCCCC--------------------------------c-HHHHHHHHHC-------CcEEEe
Confidence            33333322  1222222221110                                0 1233333332       555555


Q ss_pred             EecCChhHHHHHHHHHHhCCCcEEEecCcc---hhcccc----cccCCCCCceEEcCCC--CChhhHHHHHHHHhcCCee
Q 013050          236 VHLSDASSSLDLLMEAKTNGDSITVETCPH---YLAFSA----EEIPDGDTRFKCAPPI--RDAANKEKLWEALMDGHID  306 (450)
Q Consensus       236 ~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~g~~~  306 (450)
                      -|..   .+.+++.++.+.|+....-.+.-   ...-.+    ..+...+........-  -.+...+.++++.  |-.+
T Consensus       194 GHs~---A~~~~~~~a~~~Ga~~~THlfNaM~~~~hR~pg~vga~l~~~~~~~elI~Dg~Hv~p~~~~~~~~~k--~~~~  268 (382)
T PRK11170        194 GHSN---ATYEEAKAGFRAGITFATHLYNAMPYITGREPGLVGAILDEPDVYCGIIADGLHVDYANIRNAKRLK--GDKL  268 (382)
T ss_pred             eCCc---CCHHHHHHHHHcCCCEEeeccccCCcccCCCcchhhHhhcCCCcEEEEEcCcccCCHHHHHHHHHhc--CCcE
Confidence            5543   33444444444444321100000   000000    0000001111111111  0122333334443  3456


Q ss_pred             EEcCCCCCCChh----hhc------ccCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCC-CC
Q 013050          307 MLSSDHSPTVPE----LKL------LDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ-VS  374 (450)
Q Consensus       307 ~~gtD~~~~~~~----~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~~al~~aT~~~A~~lg~-~~  374 (450)
                      ++-||.....-.    ..+      ...|......+.+.+....+...++.+ ...+++++++++|+|.|||+++|+ +.
T Consensus       269 ~lvtDa~~~~G~~~g~y~l~~~~v~v~~g~~~~~~G~LAGs~l~l~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl~~~  348 (382)
T PRK11170        269 CLVTDATAPAGANIEQFIFAGKTIYYRDGLCVDENGTLSGSALTMIEAVRNLVEHVGIALDEALRMATLYPARAIGVDKR  348 (382)
T ss_pred             EEEeccccCCCCCCCeEEECCEEEEEECCEEECCCCcccccHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCC
Confidence            788896432110    000      111111112223455455555555544 457999999999999999999999 55


Q ss_pred             CCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050          375 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK  434 (450)
Q Consensus       375 ~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~  434 (450)
                      .|+|++|+.|||+|+|.+.                           +|..||++|++++.
T Consensus       349 ~G~i~~G~~ADlvvld~~~---------------------------~v~~v~~~G~~~~~  381 (382)
T PRK11170        349 LGSIEAGKVANLTAFTRDF---------------------------KITKTIVNGNEVVT  381 (382)
T ss_pred             ccccCCCCcCCEEEECCCC---------------------------cEEEEEECCEEeec
Confidence            7999999999999999542                           68999999999874

>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase

Probab=99.94  E-value=6.1e-25  Score=207.17  Aligned_cols=334  Identities=19%  Similarity=0.177  Sum_probs=174.6

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC---cccchHHHHHHHHhCCceEEEeC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---EWEGFPSGTKAAAAGGITTLIDM   79 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---~~~~~~~~~~~~~~~GvT~~~~~   79 (450)
                      +++|.|+||+|++|++..+.+   +..+++|++|++|+|||||+|+|.......   ..+.+....+.+++.|||+++++
T Consensus        21 ~~~i~V~dGkI~~I~~~~~~~---~~~~viD~~G~~i~PGfID~HvHg~~g~~~~~~~~e~~~~~~~~~~~~GvTt~l~t   97 (380)
T TIGR00221        21 NGAVGINDGKISTVSTEAELE---PEIKEIDLPGNVLTPGFIDIHIHGCGGVDTNDASFETLEIMSERLPKSGCTSFLPT   97 (380)
T ss_pred             ccEEEEECCEEEEEcccccCC---CCCeEEECCCCEEccceeeeeeccccCcCCCCCCHHHHHHHHHHHHhcCeeEEeee
Confidence            478999999999998754322   245799999999999999999998543211   22568888999999999999998


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHh-cCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHH
Q 013050           80 PLNSDPSTISTETLKLKVDAAE-KRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE  158 (450)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~  158 (450)
                      . .+.+.....+.+....+... ......++++......++.         +.|+..-..         ....+.+++++
T Consensus        98 ~-~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~---------~~Gah~~~~---------i~~p~~~~~~~  158 (380)
T TIGR00221        98 L-ITQPDENIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPE---------KKGAHPPEY---------IREPDVELFKK  158 (380)
T ss_pred             c-cCCCHHHHHHHHHHHHHHHhccCCceeeeEeeecCcCChh---------hcCCCCHHH---------hhCcCHHHHHH
Confidence            6 45444444444444433321 1233344444322222210         111111000         01133444445


Q ss_pred             HHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEec
Q 013050          159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL  238 (450)
Q Consensus       159 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~  238 (450)
                      ..+.+. ..+.+..-+.+..                                .-.++++.+.+.       |+.+.+-|.
T Consensus       159 ~~~~~~-~~i~~vTlAPE~~--------------------------------~~~~~i~~l~~~-------gi~vs~GHs  198 (380)
T TIGR00221       159 FLCEAG-GVITKVTLAPEED--------------------------------QHFELIRHLKDA-------GIIVSAGHT  198 (380)
T ss_pred             HHHhcC-CCEEEEEECCCCC--------------------------------ChHHHHHHHHHC-------CeEEEeeCC
Confidence            444332 2222222221100                                012333333332       555555553


Q ss_pred             CChhHHHHHHHHHHhCCCcEEEecCcc---hhcccc----cccCCCCCceEEcCCC--CChhhHHHHHHHHhcCC-eeEE
Q 013050          239 SDASSSLDLLMEAKTNGDSITVETCPH---YLAFSA----EEIPDGDTRFKCAPPI--RDAANKEKLWEALMDGH-IDML  308 (450)
Q Consensus       239 ~~~~~~~~~~~~~~~~g~~v~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~g~-~~~~  308 (450)
                      .   .+.+++.++.+.|+....-.+.-   ...-.+    ..+...+........-  -.+...+.+++..  |. .+++
T Consensus       199 ~---A~~~~~~~a~~~Ga~~~THlfNaM~~~~hR~pg~vga~l~~~~~~~elI~Dg~Hv~p~~~~~~~r~k--g~~~~~l  273 (380)
T TIGR00221       199 N---ATYELAKAAFKAGATHATHLYNAMSPIHHREPGVIGAVLDHDDVYTEIIADGIHIHPLNIRLAKKLK--GDSKLCL  273 (380)
T ss_pred             C---CCHHHHHHHHHcCCCeeeeeccCCCCcCCCCCcHHHHHhcCCCcEEEEEcCCCcCCHHHHHHHHHhc--CCCcEEE
Confidence            3   33444444444444221100000   000000    0000011111111110  0112222233332  32 5678


Q ss_pred             cCCCCCCCh----hhhc------ccCCCccccCCCCcchhhHHHHHHHHHHh-cCCCHHHHHHHHhhchhHHhCC-CCCC
Q 013050          309 SSDHSPTVP----ELKL------LDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQ-VSKG  376 (450)
Q Consensus       309 gtD~~~~~~----~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~gls~~~al~~aT~~~A~~lg~-~~~G  376 (450)
                      .||.....-    ...+      ...|......+.+.|....+...+..+.+ .+++++++++++|.|||+++|+ ++.|
T Consensus       274 vtDa~~~~g~~~G~y~l~~~~v~~~~g~~~~~~g~LAGs~ltl~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl~~~~G  353 (380)
T TIGR00221       274 VTDSMAAAGAKDGVFIFGGKTVYIREGTCLDSNGTLAGSSLTMIEGARNLVEFTNISLTDAARMSSLNPARALGIDDRLG  353 (380)
T ss_pred             EeccccccCCCCceEeECCEEEEEECCEEEcCCCceechhhhHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHhCCCCCCc
Confidence            889643211    0010      11122222223355655666665555554 5799999999999999999999 4579


Q ss_pred             ccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCe
Q 013050          377 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN  430 (450)
Q Consensus       377 ~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~  430 (450)
                      +|++|+.|||+|+|.+.                           +|..||++|+
T Consensus       354 ~i~~G~~ADlvv~d~~~---------------------------~v~~t~~~G~  380 (380)
T TIGR00221       354 SVTVGKDANLVVFTPDF---------------------------EVILTIVNGN  380 (380)
T ss_pred             ccCCCCcCCEEEECCCC---------------------------CEEEEEeCCC
Confidence            99999999999999552                           6889999995

>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor

Probab=99.94  E-value=5e-24  Score=203.62  Aligned_cols=386  Identities=19%  Similarity=0.248  Sum_probs=204.7

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcc-----c-----------------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW-----E-----------------   59 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~-----~-----------------   59 (450)
                      ..++|+|+||+|++|++..      ++.+++|++|++|+|||||+|+|+........     |                 
T Consensus        16 ~~~dI~IedGkIv~Vg~~~------~~~~vID~~G~~VmPGfID~HtH~~gg~~~~~r~~~pe~~~~~~~~~~~~~~~~~   89 (541)
T cd01304          16 EKMDIFIRDGKIVESSSGA------KPAKVIDASGKVVMAGGVDMHSHIAGGKVNVGRILRPEDHRRDPVPKGALRRAGV   89 (541)
T ss_pred             cccEEEEECCEEEEEccCC------CCCeEEECCCCEEECCeeeeeeCccccccccccccChhhhhccccccccccccCC
Confidence            3578999999999998642      24579999999999999999999864311100     0                 


Q ss_pred             -----chHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceE---EEEecc-------ccCCCccchHH
Q 013050           60 -----GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD---VGFWGG-------LVPENAYNASA  124 (450)
Q Consensus        60 -----~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------~~~~~~~~~~~  124 (450)
                           .....-..+.+-|+|++++..  ..| ......=++..+    ...++   +..++.       +.+.+.+..++
T Consensus        90 g~~~pst~~tgy~ya~mGytt~~e~a--~~p-~~a~h~h~e~~~----~p~~d~~~~~~~gnn~~~~~~~~~~~~~~~~~  162 (541)
T cd01304          90 GFSVPSTLATGYRYAEMGYTTAFEAA--MPP-LNARHTHEEMAD----TPILDKGAYPLLGNNWFVLEYLRDGDMEKLAA  162 (541)
T ss_pred             CccCCCchHhhhHHHhcCcceeeccc--CCc-ccchhhhHHhcc----CccccccceEEecchHHHHHHHhcCCHHHHHH
Confidence                 011112356677999999874  111 111111111111    11111   111111       11111112222


Q ss_pred             -HHHHHH-cCCcEEEEecccC---------------CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhc
Q 013050          125 -LEALLN-AGVLGLKSFMCPS---------------GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLE  187 (450)
Q Consensus       125 -~~~~~~-~g~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~  187 (450)
                       +..+++ ....++|....-.               ....+...+.+.++.+.+.++++|+|..+|.+-.+.        
T Consensus       163 ~vaw~l~~tk~~giK~vnpgG~~a~~~~~~~~~~d~~~~~~~vtp~~ii~~l~~~~~~lg~ph~iH~h~nnl--------  234 (541)
T cd01304         163 YVAWTLKASKGYGIKVVNPGGTEAWGWGQNVLSLDDPVPYFDITPREILKGLAEANEELGLPHSIHVHCNNL--------  234 (541)
T ss_pred             HHHHHHHhccceEEEEECCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCceEEEEccccC--------
Confidence             223333 3566777642100               001122345677777888889999998888853321        


Q ss_pred             cCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecC------C----hhHHHHHHHHHHhCCCc
Q 013050          188 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS------D----ASSSLDLLMEAKTNGDS  257 (450)
Q Consensus       188 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~------~----~~~~~~~~~~~~~~g~~  257 (450)
                                    +.|-  +.+...+.+++++..+....  .-.+|++|+.      +    -....+.+.++...+..
T Consensus       235 --------------g~pg--n~~~t~~t~~~~~~~~~~~~--~~~~h~tH~qfhsyg~~~~~~~~s~a~~i~~~~n~~~~  296 (541)
T cd01304         235 --------------GVPG--NYETTLETMKAAEGVKPDPR--RQVLHLTHVQFHSYGGTSWRDFESGAERIADYVNANDH  296 (541)
T ss_pred             --------------CCCC--cHHHHHHHHHHhhcCCCccc--cceeEeeeeeEEeeccCCcccHhHHHHHHHHHHHcCCC
Confidence                          1111  12334566666663211000  1148888884      1    12455666776677766


Q ss_pred             EEEecCcch----hccccc---cc-----CC-----------CCCceEEcCCC-CChhhHHHH--------HHHHhcCCe
Q 013050          258 ITVETCPHY----LAFSAE---EI-----PD-----------GDTRFKCAPPI-RDAANKEKL--------WEALMDGHI  305 (450)
Q Consensus       258 v~~~~~~~~----~~~~~~---~~-----~~-----------~~~~~~~~~~~-~~~~~~~~l--------~~~~~~g~~  305 (450)
                      +++++....    ...+.+   .+     ..           .+..  +.|-. +.......+        .-.+++--.
T Consensus       297 it~D~G~v~f~~t~tmt~d~~~~~~~~~~~~~kw~~~d~e~e~g~G--vvp~~y~~k~~v~~lqwaiglEl~ll~~dp~~  374 (541)
T cd01304         297 VTIDVGQVIFGETTTMTGDGPMQFDLHGLTGLKWVNCDIELETGSG--VVPFIYSPKNPVNALQWAIGLELFLLIDDPWK  374 (541)
T ss_pred             EEEEeCceecCCcEEEEccchhhcccccccCCceeeeeeEeccCCc--eEEeEecCCCCchHHHHHHHHHHHHHhCCcce
Confidence            776654431    111110   00     00           0110  11111 111111111        122233347


Q ss_pred             eEEcCCCCCCChhhhcccCCCccccCCCCcch---hhHHHHH---HHHH--------HhcCCCHHHHHHHHhhchhHHhC
Q 013050          306 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSL---QFVLPVT---WSYG--------RKYGVTLEQLASWWSERPAKLAG  371 (450)
Q Consensus       306 ~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~---~~~~--------~~~gls~~~al~~aT~~~A~~lg  371 (450)
                      +++.|||. .        .++|..-|.-+.-+   ..+...+   -..+        .+..+|++++++++|.|||++||
T Consensus       375 ~~~tTDhP-n--------~gpf~~YP~~i~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~reLSLeei~~mtT~nPAKiLG  445 (541)
T cd01304         375 VILTTDHP-N--------GGPFTRYPRIIAWLMSKKFRAEEIATLHKWAQDRSALPGIDREYSLYEIAIMTRAGPAKLLG  445 (541)
T ss_pred             EEeecCCC-C--------CCCcccHHHHHHHHhCHHHHHHHHHhcCHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHhC
Confidence            89999963 2        22332211100000   0000000   0000        12337999999999999999999


Q ss_pred             CCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCcccc
Q 013050          372 QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL  448 (450)
Q Consensus       372 ~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~  448 (450)
                      +++.|+|++|+.|||+|+|.++. ++... ++..      .   ....++|..||++|++|+++|+++....|+.+.
T Consensus       446 L~~kG~L~~G~~ADLvIfD~n~~-~v~~~-dl~s------~---~~~~gkV~~Tiv~GkvVv~dGeiv~~~~G~~l~  511 (541)
T cd01304         446 LSDKGHLGVGADADIAIYDDDPD-QVDPS-DYEK------V---EKAFSRAAYVLKDGEIVVKDGEVVAEPWGRTYW  511 (541)
T ss_pred             CCCCCccCCCCcCCEEEEeCCcC-ccCch-hhcC------c---eeecCcEEEEEECCEEEEECCEEccCCCCcEEE
Confidence            95579999999999999998864 43322 2111      1   223468999999999999999999877787653

FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.

>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.7e-24  Score=196.35  Aligned_cols=332  Identities=19%  Similarity=0.242  Sum_probs=185.9

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC----cccchHHHHHHHHhCCceEEEe
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT----EWEGFPSGTKAAAAGGITTLID   78 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~----~~~~~~~~~~~~~~~GvT~~~~   78 (450)
                      .+.|.|+||+|.+|.+ .+.+   .+.+++|.+|.+|.|||||.|+|.......    ..+.+....+.++++|+|+++.
T Consensus        18 ~~~v~i~dg~I~~i~~-~~~p---~~~e~id~~G~~l~PGfID~hihG~gG~~~~D~~~~~~l~~i~~~~~~~GtTsfLp   93 (380)
T COG1820          18 GGAVVIEDGKIEAVVP-AELP---ADAEIIDLKGALLVPGFIDLHIHGGGGADFMDAGSVETLETMAEAHLRHGTTSFLP   93 (380)
T ss_pred             CcEEEEcCCEEEEEec-CcCC---CcceeecCCCCEecccEEEEeecCcCcccccCccCHHHHHHHHHHhhhcCeeeeee
Confidence            4689999999999998 2333   478999999999999999999998765322    2245777888999999999987


Q ss_pred             CCCCCCCCCCcHHHHHHHHHH----HhcCC--ceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCC
Q 013050           79 MPLNSDPSTISTETLKLKVDA----AEKRI--YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTN  152 (450)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  152 (450)
                      .. -+    ...+.+....+.    .....  .+.+++-|++.+..           +.|+.....         ....+
T Consensus        94 T~-iT----~~~e~i~~al~~~~e~~~~~ga~ilGiHLEGP~ls~~-----------kkGAh~~~~---------ir~~~  148 (380)
T COG1820          94 TL-IT----ASLEKIKAALRAIREAIAKGGAQILGIHLEGPFLSPE-----------KKGAHNPEY---------IRPPD  148 (380)
T ss_pred             ec-cc----CCHHHHHHHHHHHHHHHhccCCceEEEEeecCccCHh-----------hccCCCHHH---------hCCCC
Confidence            64 22    334444333332    22111  12333333222111           122211111         11346


Q ss_pred             HHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCce
Q 013050          153 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH  232 (450)
Q Consensus       153 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~  232 (450)
                      .+++.+.++.++..-..+.+-++....                                 .+++..+.+.       ++.
T Consensus       149 ~~~~~~~~~~a~g~i~~vTlAPE~~~~---------------------------------~e~i~~l~~~-------gii  188 (380)
T COG1820         149 PEELEQLIAAADGLIKLVTLAPELDGT---------------------------------KELIRLLANA-------GIV  188 (380)
T ss_pred             HHHHHHHHhhccCceEEEEECCCCCCC---------------------------------HHHHHHHHhC-------CeE
Confidence            677777776666533334444433211                                 2334444433       777


Q ss_pred             EEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccc-c------cccCCCCCceEEcCCCCChhhHHHHHHHH--hcC
Q 013050          233 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS-A------EEIPDGDTRFKCAPPIRDAANKEKLWEAL--MDG  303 (450)
Q Consensus       233 ~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g  303 (450)
                      +.+-|..   .+.+..+.+.+.|+....-.+.-.--+. +      ..+...+........ ..--+...+.-++  +-.
T Consensus       189 vs~GHS~---Atye~~~~a~~~Ga~~~THlfNaMs~l~hREPGvvGA~L~~~~~~~eiIaD-G~HVhP~~~~ia~~~kg~  264 (380)
T COG1820         189 VSIGHSN---ATYEQARAAFEAGATFVTHLFNAMSGLHHREPGVVGAALDNPDVYAEIIAD-GVHVHPAAIRLALKAKGG  264 (380)
T ss_pred             EEecCcc---ccHHHHHHHHHhCccEEEeeccCCCCCCCCCCcccceeecCCCeEEEEEcc-CcccCHHHHHHHHhccCC
Confidence            7777744   5566666666666543321111100000 0      000000111111110 0001111122122  223


Q ss_pred             CeeEEcCCCCCCChh----hhc------ccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          304 HIDMLSSDHSPTVPE----LKL------LDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       304 ~~~~~gtD~~~~~~~----~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      -.+++-||.....-.    ..+      ...|......+.+.|....+...++. ....+++++||++|+|.+||+++|+
T Consensus       265 ~~i~LVTDam~a~G~~dg~y~lgg~~V~v~~g~~~~~~GtLAGS~Ltm~~avrn~v~~~~~~~~eAv~maS~~PA~~lgl  344 (380)
T COG1820         265 DKIVLVTDAMAAAGLPDGEYILGGQTVTVADGARRLEDGTLAGSTLTMDEAVRNLVEWGGISLAEAVRMASLNPAKALGL  344 (380)
T ss_pred             ceEEEEEccccccCCCCccEEECCEEEEEECCEEECCCCceeeeeeeHHHHHHHHHHHhCCCHHHHHHHhhhhHHHHhCC
Confidence            457888996432111    000      11221111233344555555554444 4566899999999999999999999


Q ss_pred             -CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050          373 -VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK  434 (450)
Q Consensus       373 -~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~  434 (450)
                       +++|+|++||.||||+||.|.                           +|..||++|++++.
T Consensus       345 ~~~~G~i~~G~~Adlvvld~d~---------------------------~v~~T~i~G~~~~~  380 (380)
T COG1820         345 DDRLGSIKPGKDADLVVLDDDL---------------------------NVKATWINGEKVFN  380 (380)
T ss_pred             cCcccccCCCcccCEEEECCCC---------------------------cEEEEEECCEEeeC
Confidence             778999999999999999662                           78999999999873

>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine

Probab=99.94  E-value=5.6e-24  Score=206.01  Aligned_cols=282  Identities=21%  Similarity=0.241  Sum_probs=182.7

Q ss_pred             ecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEec
Q 013050           33 DYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG  112 (450)
Q Consensus        33 D~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (450)
                      |++|++|+|||||+|+|+..+...    .....+.++.+|||++++.+ ...+.....+.+....+.. .+.++++.++.
T Consensus         1 Da~G~~v~PG~ID~H~Hi~~~~~~----~~~~~~~a~~~GvTtvv~~p-~~~~~v~g~~~~~~~~~~a-~~~p~~~~~~~   74 (422)
T cd01295           1 DAEGKYIVPGFIDAHLHIESSMLT----PSEFAKAVLPHGTTTVIADP-HEIANVAGVDGIEFMLEDA-KKTPLDIFWML   74 (422)
T ss_pred             CCCCCEEccCEEEccCCcCCCCCC----hHHHHHHHHCCCcEEEEeCC-CCCCcCCCHHHHHHHHHHH-hCCCceEEEeC
Confidence            789999999999999999876533    34567788999999999997 5555566777777776654 44466665544


Q ss_pred             ccc-CCCc-----c--chHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhh
Q 013050          113 GLV-PENA-----Y--NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH  183 (450)
Q Consensus       113 ~~~-~~~~-----~--~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~  183 (450)
                      +.. +...     .  ..+++.++.+ .++.+++.++.++..    ....+.+.+.++.|+++|+++.+|+.....    
T Consensus        75 p~~vp~t~~e~~g~~~~~~~i~~l~~~~~vvglgE~md~~~v----~~~~~~l~~~i~~A~~~g~~v~~Ha~g~~~----  146 (422)
T cd01295          75 PSCVPATPFETSGAELTAEDIKELLEHPEVVGLGEVMDFPGV----IEGDDEMLAKIQAAKKAGKPVDGHAPGLSG----  146 (422)
T ss_pred             CCcCCCCCCCCCCCcCCHHHHHHHhcCCCCcEEEEeccCccc----cCCcHHHHHHHHHHHhCCCEEEEeCCCCCH----
Confidence            321 1111     1  3677888877 599999998766431    346678999999999999999999954221    


Q ss_pred             hhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecC
Q 013050          184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETC  263 (450)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~  263 (450)
                                                ..+...+.    .       +...  .|.+.  ...+.++.+ ++|..+..  .
T Consensus       147 --------------------------~~L~a~l~----a-------Gi~~--dH~~~--~~eea~e~l-~~G~~i~i--~  182 (422)
T cd01295         147 --------------------------EELNAYMA----A-------GIST--DHEAM--TGEEALEKL-RLGMYVML--R  182 (422)
T ss_pred             --------------------------HHHHHHHH----c-------CCCC--CcCCC--cHHHHHHHH-HCCCEEEE--E
Confidence                                      11222221    1       2111  35443  222333333 56654443  2


Q ss_pred             cchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHh--cCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHH
Q 013050          264 PHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM--DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL  341 (450)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  341 (450)
                      +...                      ....+.+...+.  .+..++++||..+......                 ...+
T Consensus       183 ~g~~----------------------~~~~~~~~~~l~~~~~~~i~l~TD~~~~~~~~~-----------------~g~~  223 (422)
T cd01295         183 EGSI----------------------AKNLEALLPAITEKNFRRFMFCTDDVHPDDLLS-----------------EGHL  223 (422)
T ss_pred             Cccc----------------------HhhHHHHHHhhhhccCCeEEEEcCCCCchhhhh-----------------cchH
Confidence            1110                      111222222232  4688999999742211110                 0113


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeE
Q 013050          342 PVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGK  421 (450)
Q Consensus       342 ~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (450)
                      ....+.+...+++++++++++|.|||+++++++.|+|+||+.|||+++|...        .                 .+
T Consensus       224 ~~v~r~a~~~g~s~~eal~~aT~n~A~~~gl~~~G~i~~G~~AD~vv~~~~~--------~-----------------~~  278 (422)
T cd01295         224 DYIVRRAIEAGIPPEDAIQMATINPAECYGLHDLGAIAPGRIADIVILDDLE--------N-----------------FN  278 (422)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHhHHHHHHcCCCCCcccCCCCcCCEEEECCCC--------C-----------------Cc
Confidence            3333445567899999999999999999999668999999999999998211        0                 26


Q ss_pred             EEEEEECCeEEEecC
Q 013050          422 VLATISRGNLVYKEG  436 (450)
Q Consensus       422 v~~v~v~G~~v~~~g  436 (450)
                      |..||++|++||+.-
T Consensus       279 v~~v~~~G~~v~~r~  293 (422)
T cd01295         279 ITTVLAKGIAVVERH  293 (422)
T ss_pred             eEEEEECCeEEEEec
Confidence            889999999999743

This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.

>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A

Probab=99.94  E-value=6.7e-24  Score=203.79  Aligned_cols=86  Identities=22%  Similarity=0.329  Sum_probs=67.9

Q ss_pred             cCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCe
Q 013050          351 YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN  430 (450)
Q Consensus       351 ~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~  430 (450)
                      ..+|++++++|+|.|||++||+++.|+|++|+.|||+|+|.++.... ..         ...+.  .....+++||++|+
T Consensus       428 Re~sL~EI~~mtTanPAkaLGL~dkG~L~pGa~ADIaI~D~~~~~~~-~~---------~~~v~--~~~~~v~~Tik~G~  495 (556)
T TIGR03121       428 REYSLYEIAIMTRAGPAKLLGLTDRGHLGVGADADIAVYDINPDDVD-TD---------YADVE--KAFSTALYVFKDGE  495 (556)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCcCCEEEEeCcccccC-Cc---------hHHHh--hccCCccEEEECCE
Confidence            45999999999999999999996579999999999999997653221 00         11111  11146899999999


Q ss_pred             EEEecCcccCCCCCcccc
Q 013050          431 LVYKEGNHAPAACGSPIL  448 (450)
Q Consensus       431 ~v~~~g~~~~~~~g~~~~  448 (450)
                      +|+++|+++....||.+.
T Consensus       496 vV~~dGei~~~~~G~~~~  513 (556)
T TIGR03121       496 IVVKDGEIVETPWGRTYW  513 (556)
T ss_pred             EEEECCEEccCCCCcEEE
Confidence            999999999998898764

Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.

>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases

Probab=99.93  E-value=8e-25  Score=216.62  Aligned_cols=186  Identities=18%  Similarity=0.161  Sum_probs=114.5

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCC
Q 013050          148 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP  227 (450)
Q Consensus       148 ~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~  227 (450)
                      .+.++.+.+.++++.|+++|++|.+|+.....                                ++.+++..+......+
T Consensus       289 ~~~~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~--------------------------------i~~~l~~~~~~~~~~g  336 (479)
T cd01300         289 LLLISPEELEELVRAADEAGLQVAIHAIGDRA--------------------------------VDTVLDALEAALKDNP  336 (479)
T ss_pred             CccCCHHHHHHHHHHHHHCCCCEEEEEecHHH--------------------------------HHHHHHHHHHHHHhcC
Confidence            45678999999999999999999999954322                                2333333332222222


Q ss_pred             CCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCC--hhhHHHHHHHHhcCCe
Q 013050          228 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD--AANKEKLWEALMDGHI  305 (450)
Q Consensus       228 ~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~g~~  305 (450)
                      ..+.+..+.|+...  +.+.++++++.|+.+.  ++|.+...........        .+..  ......+..+++.|+.
T Consensus       337 ~~~~r~~i~H~~~~--~~~~~~~l~~~gv~~~--~~P~~~~~~~~~~~~~--------~lg~~~~~~~~p~~~~~~~Gv~  404 (479)
T cd01300         337 RADHRHRIEHAQLV--SPDDIPRFAKLGVIAS--VQPNHLYSDGDAAEDR--------RLGEERAKRSYPFRSLLDAGVP  404 (479)
T ss_pred             CCCCCceeeecccC--CHHHHHHHHHcCCceE--eCcccccCchHHHHHh--------cccHHHHhcCchHHHHHHCCCe
Confidence            23567888998873  4567788888886544  4777654332211000        0110  0122345677889999


Q ss_pred             eEEcCCCCCC--ChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCC
Q 013050          306 DMLSSDHSPT--VPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGN  382 (450)
Q Consensus       306 ~~~gtD~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~  382 (450)
                      +++|||+.+.  ++...+..         +..........  ....+.++|++++++++|.|||+++|+ +++|+|++||
T Consensus       405 v~lGSD~~~~~~~p~~~~~~---------av~~~~~~~~~--~~~~~~~ls~~~al~~~T~~~A~~lg~e~~~GsLe~Gk  473 (479)
T cd01300         405 VALGSDAPVAPPDPLLGIWA---------AVTRKTPGGGV--LGNPEERLSLEEALRAYTIGAAYAIGEEDEKGSLEPGK  473 (479)
T ss_pred             eeccCCCCCCCCCHHHHHHH---------HheeeCCCCCC--CCCccccCCHHHHHHHHHHHHHHHhccccccccccCCc
Confidence            9999997433  11111000         00000000000  001245799999999999999999999 7799999999


Q ss_pred             CccEEE
Q 013050          383 HADLVV  388 (450)
Q Consensus       383 ~ADlvv  388 (450)
                      +|||||
T Consensus       474 ~ADlvv  479 (479)
T cd01300         474 LADFVV  479 (479)
T ss_pred             ccceeC
Confidence            999986

YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.

>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate

Probab=99.93  E-value=1.8e-24  Score=206.04  Aligned_cols=325  Identities=19%  Similarity=0.219  Sum_probs=175.9

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC-CC--cccchHHHHHHHHhCCceEEEe
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG-RT--EWEGFPSGTKAAAAGGITTLID   78 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~-~~--~~~~~~~~~~~~~~~GvT~~~~   78 (450)
                      .+++|.|++|+|++|++..+.+   ...+++|++|++|+|||||+|+|...+. +.  ..+++....+.++++|||++++
T Consensus        15 ~~~~i~i~~g~I~~i~~~~~~~---~~~~vid~~g~~l~PG~iD~H~H~~~g~~~~~~~~e~~~~~~~~~~~~GvTtv~~   91 (374)
T cd00854          15 EDGAVLVEDGKIVAIGPEDELE---EADEIIDLKGQYLVPGFIDIHIHGGGGADFMDGTAEALKTIAEALAKHGTTSFLP   91 (374)
T ss_pred             cccEEEEECCEEEEecCCCCcc---cCCcEEECCCCEecccEEEeeecccCCCCCCCCCHHHHHHHHHHHHccCcceeec
Confidence            3578999999999998754322   2458999999999999999999986532 11  2456778889999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhcC-CceEE--EEeccccCCC-----------ccchHHHHHHHHcCCcEEEEecccCC
Q 013050           79 MPLNSDPSTISTETLKLKVDAAEKR-IYVDV--GFWGGLVPEN-----------AYNASALEALLNAGVLGLKSFMCPSG  144 (450)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~~  144 (450)
                      ++ .+.+.....+.+..+.+..+.. ....+  ..-++.....           ....++++++++.+...+|.+.    
T Consensus        92 t~-~t~~~~~~~~~l~~~~~~~~~~~g~~~~g~hleGP~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~ik~~t----  166 (374)
T cd00854          92 TT-VTAPPEEIAKALAAIAEAIAEGQGAEILGIHLEGPFISPEKKGAHPPEYLRAPDPEELKKWLEAAGGLIKLVT----  166 (374)
T ss_pred             cc-cCCCHHHHHHHHHHHHHHhhcCCCCeeEEEeeecCccCcccCCCCCHHHcCCcCHHHHHHHHHhcCCCEEEEE----
Confidence            86 4443333333444444433322 12222  2223322211           1234678888887777777753    


Q ss_pred             CCCCCCCCHHHH--HHHHHHHHhcCCcEE-EecCC-hhhhhhhhhhccCcCCccccccccCCCChH--HHHHHHHHHHHH
Q 013050          145 INDFPMTNASHI--KEGLSVLARYKRPLL-VHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPS--WEEAAIRELLTV  218 (450)
Q Consensus       145 ~~~~~~~~~~~l--~~~~~~a~~~g~~v~-~H~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~l  218 (450)
                            ..+|..  .++++.++++|+.+. .|... .......+..+.....+.     ....+..  .+...+...++-
T Consensus       167 ------laPE~~~~~~~i~~~~~~gi~v~~GH~~a~~~~~~~a~~~G~~~~tH~-----~n~m~~~~~r~~~~~~a~l~~  235 (374)
T cd00854         167 ------LAPELDGALELIRYLVERGIIVSIGHSDATYEQAVAAFEAGATHVTHL-----FNAMSPLHHREPGVVGAALSD  235 (374)
T ss_pred             ------ECCCCCChHHHHHHHHHCCeEEEeeCCcCCHHHHHHHHHcCCCeeeEC-----CCCCCCcCCCCCcHHHHhhcC
Confidence                  333444  688999999999995 99863 233444443322221111     1111110  011111111110


Q ss_pred             HHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHH
Q 013050          219 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWE  298 (450)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  298 (450)
                      -      .+.-+...+..|+..  +.+..+.+.+.. -.+..  ++......+.  +  +..+...    ....      
T Consensus       236 ~------~~~~~li~dg~Hv~~--~~~~~~~r~~g~-~~~~l--vtD~~~~~G~--~--~g~y~~~----~~~~------  290 (374)
T cd00854         236 D------DVYAELIADGIHVHP--AAVRLAYRAKGA-DKIVL--VTDAMAAAGL--P--DGEYELG----GQTV------  290 (374)
T ss_pred             C------CCeEEEEcCCCcCCH--HHHHHHHHhcCC-CcEEE--EeccccccCC--C--CCeEEEC----CEEE------
Confidence            0      000022223344443  444444444311 11111  1211111000  0  0000000    0000      


Q ss_pred             HHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCC
Q 013050          299 ALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKG  376 (450)
Q Consensus       299 ~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~-~~~G  376 (450)
                      ....+ ...+.++                     ...+....+...+..+. ..++|++++++|+|.|||+++|+ ++.|
T Consensus       291 ~~~~~-~~~~~~g---------------------~laG~~~~l~~~~~~l~~~~~l~~~~al~~aT~npA~~lg~~~~~G  348 (374)
T cd00854         291 TVKDG-VARLADG---------------------TLAGSTLTMDQAVRNMVKWGGCPLEEAVRMASLNPAKLLGLDDRKG  348 (374)
T ss_pred             EEECC-EEEcCCC---------------------CeeehHhhHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHcCCCCCcC
Confidence            00000 1111111                     22333344444444444 45799999999999999999999 5689


Q ss_pred             ccccCCCccEEEEeCC
Q 013050          377 AIAIGNHADLVVWEPE  392 (450)
Q Consensus       377 ~I~~G~~ADlvv~d~~  392 (450)
                      +|++|+.|||+++|.+
T Consensus       349 ~i~~G~~ADlvv~d~~  364 (374)
T cd00854         349 SLKPGKDADLVVLDDD  364 (374)
T ss_pred             CcCCCCcCCEEEECCC
Confidence            9999999999999965

This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.

>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915

Probab=99.93  E-value=2.6e-23  Score=198.39  Aligned_cols=328  Identities=19%  Similarity=0.221  Sum_probs=176.4

Q ss_pred             eeEEEeCCEEEEeccCCCCCCCCCCCcEEecCC-CEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCC
Q 013050            4 RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGE-AVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN   82 (450)
Q Consensus         4 ~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g-~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~   82 (450)
                      .+|+|+||||++|++....    ++.+++|++| ++|+|||||+|+|+..+.....+++.   ..++.+|||++++++ .
T Consensus        16 ~~v~i~~g~I~~v~~~~~~----~~~~~iD~~g~~~l~PG~ID~H~H~~~~~~~~~~~~~---~~a~~~GvTt~~~~~-~   87 (365)
T TIGR03583        16 VDIAIEDGKIAAVGTTITG----SAKQTIDLEGETYVSAGWIDDHTHCFPKSALYYDEPD---EIGVKTGVTTVVDAG-S   87 (365)
T ss_pred             eEEEEECCEEEEecCCCCC----CCCeEEECCCCeEEecCEEEeeeccCCCcccccCCHh---HhhhcCceeEEEeCC-C
Confidence            4899999999999864322    2458999999 99999999999999755433333332   346889999999986 3


Q ss_pred             CCCCCCcHHHHHHHHHHHhcCC--ceEEEEeccccCC-----CccchHHHHHHHH---cCCcEEEEecccCCCCCCCCCC
Q 013050           83 SDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLVPE-----NAYNASALEALLN---AGVLGLKSFMCPSGINDFPMTN  152 (450)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~  152 (450)
                      +.  ..+.+.+....+......  .+.+..++.....     .....+.+.++.+   .++.+++.+++.....+ ...+
T Consensus        88 ~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~vv~~~~~~t~~~i~E-~gl~  164 (365)
T TIGR03583        88 TG--ADDIDDFYRLAQQAKTNVFALLNISRIGLVAQDELADLSNLDASAVKQAVERYPDFIVGLKARMSKSVVGD-NGIE  164 (365)
T ss_pred             CC--CCCHHHHHHHHHhhCCcEEEEeeehhccccChhhhhChHHhHHHHHHHHHHhCcCcEEEEEEeeccccccc-CCcC
Confidence            32  244555554444332211  1222222322111     1123344454444   24667777765332111 1223


Q ss_pred             HHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCce
Q 013050          153 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH  232 (450)
Q Consensus       153 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~  232 (450)
                      +..+.+.+..+ +.+++|.+|++....                               ...++......        + .
T Consensus       165 ~~~~~~~l~~~-~~~~pv~vH~~~a~~-------------------------------~~~~i~~~~~~--------g-~  203 (365)
T TIGR03583       165 PLEIAKQIQQE-NLELPLMVHIGSAPP-------------------------------ELDEILALMEK--------G-D  203 (365)
T ss_pred             HHHHHHHHHHh-cCCCcEEEEeCCCcc-------------------------------CHHHHHHHhcC--------C-C
Confidence            44555555444 789999999965431                               01233332221        2 1


Q ss_pred             EEEEecCChh---------HHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcC
Q 013050          233 LHIVHLSDAS---------SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG  303 (450)
Q Consensus       233 ~~~~h~~~~~---------~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g  303 (450)
                       .+.|+.+..         ...+.+......|.  +++...+..                 +     ........+...+
T Consensus       204 -~~~H~fng~~~~~~r~~g~~~~~~~~~l~~G~--i~d~~hg~~-----------------~-----~~~~~~~~~~~~~  258 (365)
T TIGR03583       204 -VLTHCFNGKPNGILRETGEVKPSVLEAYNRGV--ILDVGHGTA-----------------S-----FSFHVAEKAKRAG  258 (365)
T ss_pred             -eeeeeecCCCCCCCCCcchHHHHHHHHHhCeE--EEEeCCCCC-----------------C-----chHHHHHHHHhCC
Confidence             346665420         11244444444443  332211000                 0     0111112222233


Q ss_pred             C-eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCC
Q 013050          304 H-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGN  382 (450)
Q Consensus       304 ~-~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~  382 (450)
                      + ..+.++|.. .               .+...+....+......+...|++++++++++|.|||++||+++.|+|++|+
T Consensus       259 ~~~~td~~d~~-~---------------~~~~~gp~~~l~~~~~~~~~~g~~~~ea~~~~t~npa~~~gl~~~g~i~~g~  322 (365)
T TIGR03583       259 IFPDTISTDIY-I---------------RNRINGPVYSLATVMSKFLALGYSLEEVIEKVTKNAAEILKLTQKGRLQEGY  322 (365)
T ss_pred             CCCcccccccc-c---------------CCCccCccccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCC
Confidence            2 123333321 0               0112222333444444444679999999999999999999995489999999


Q ss_pred             CccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEE
Q 013050          383 HADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV  432 (450)
Q Consensus       383 ~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v  432 (450)
                      .|||+++|.+....     .+.+... +.......  -.+..|+.+|++.
T Consensus       323 ~ad~~~~~~~~~~~-----~~~~~~g-~~~~~~~~--~~~~~~~~~~~~~  364 (365)
T TIGR03583       323 DADLTIFTVKAEPK-----KLTDSEG-DSRIAEEQ--IKPLAVIIGGEYY  364 (365)
T ss_pred             cccEEEEecCCCCc-----eeecCCC-CEEEeccc--cceEEEEECCEEe
Confidence            99999999754321     1222211 11111111  1467899999874

Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.

>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]

Probab=99.93  E-value=7.9e-24  Score=188.27  Aligned_cols=333  Identities=23%  Similarity=0.300  Sum_probs=219.0

Q ss_pred             CcceeEEEeCCEEEEeccCCCCCCCC-------CCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCc
Q 013050            1 MCKRAVEIKEGNIISIVSEEDWPRNS-------KTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGI   73 (450)
Q Consensus         1 ~~~~~V~I~~g~I~~Ig~~~~~~~~~-------~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~Gv   73 (450)
                      ++++||.|+||||++||+...+..+.       +.+++|.++|+++..|-||+|+|+-.|         .....++.+|+
T Consensus        82 i~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHfI~P---------qqi~~Al~sGi  152 (568)
T COG0804          82 IVKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHFICP---------QQIEEALASGI  152 (568)
T ss_pred             eEEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEEecH---------HHHHHHHhcCc
Confidence            47899999999999999876544322       467888999999999999999998755         35678899999


Q ss_pred             eEEEeCCCCC------CCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCC
Q 013050           74 TTLIDMPLNS------DPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND  147 (450)
Q Consensus        74 T~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  147 (450)
                      |+.+..+.+.      ...+.....+..+++.++. .++++++.+   ..+......+.+.++.|+.++|.       ++
T Consensus       153 TtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d~-~p~N~g~lg---KGn~s~~~~L~Eqi~aGa~GlKl-------HE  221 (568)
T COG0804         153 TTMIGGGTGPADGTNATTCTPGPWHIARMLQAADG-LPMNIGFLG---KGNASNPAPLAEQIEAGAIGLKL-------HE  221 (568)
T ss_pred             EEEecCccCCCCCcccccccCCHHHHHHHHHhhhc-CceeeEEee---cCCCCCchhHHHHHhhccceeEe-------ec
Confidence            9998764111      1123445566667666554 478888865   45555566799999999999999       45


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCC
Q 013050          148 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP  227 (450)
Q Consensus       148 ~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~  227 (450)
                      .|..++..+..++..|.+++.+|.+|.+..+.                             ...++..+...+       
T Consensus       222 DWG~TpaaI~~~L~VAD~~DvqVaiHtDTLNE-----------------------------sGfvEdTi~A~~-------  265 (568)
T COG0804         222 DWGATPAAIDTCLSVADEYDVQVAIHTDTLNE-----------------------------SGFVEDTIAAIK-------  265 (568)
T ss_pred             ccCCCHHHHHHHHhhhhhhceEEEEeeccccc-----------------------------ccchHhHHHHhc-------
Confidence            56788999999999999999999999966442                             234566666665       


Q ss_pred             CCCceEEEEecCCh--hHHHHHHHHHHhCCCcEE--EecCcchhcccccccCCCCCceEEcCCCCC------hhhH-HHH
Q 013050          228 AEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSIT--VETCPHYLAFSAEEIPDGDTRFKCAPPIRD------AANK-EKL  296 (450)
Q Consensus       228 ~~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~l  296 (450)
                        +.-+|..|..-+  --..+.++-+...++..+  ....|+..-.-.+.+...-.+.+.+|.+.+      .+-+ +-+
T Consensus       266 --gRtIHtyHtEGAGGGHAPDiikv~~~~NvLPsSTNPT~PytvNT~~EhlDMlMVcHhL~p~ipeDvaFAeSRIR~eTI  343 (568)
T COG0804         266 --GRTIHTYHTEGAGGGHAPDIIKVAGQPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPRIPEDVAFAESRIRPETI  343 (568)
T ss_pred             --CceeEEeeccCCCCCCccHHHHHccCCCcCcCCCCCCCCcccccHHHhhhhhhhhccCCCCCcchhhhhhhccchhhh
Confidence              778888887632  134456666544432211  111111111111111112234445554311      1111 111


Q ss_pred             ---HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh---------------cCCCHHHH
Q 013050          297 ---WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK---------------YGVTLEQL  358 (450)
Q Consensus       297 ---~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---------------~gls~~~a  358 (450)
                         .-..+.|...+++||+.....                   +....-..|+.+.+               ..+...+.
T Consensus       344 AAEdiLhDmGafSmisSDSQAMGR-------------------vGEvi~RtwQtA~kmK~qrG~L~~d~~~nDN~RvkRY  404 (568)
T COG0804         344 AAEDILHDMGAFSMISSDSQAMGR-------------------VGEVITRTWQTADKMKKQRGALPEDAGGNDNFRVKRY  404 (568)
T ss_pred             hHHHHHhhccceEEeccchHhhhc-------------------cchhhhhHHHHHHHHHHhcCCCCCCCCCCccHHHhhh
Confidence               113345888899999754311                   11111122221111               11557788


Q ss_pred             HHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050          359 ASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK  434 (450)
Q Consensus       359 l~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~  434 (450)
                      +..+|+|||-.-|+ +.+||+|+||.||||+|++           .++-             -++..|+.+|-+.+.
T Consensus       405 iaKyTINPAIthGis~~vGSvEvGK~ADlVLW~P-----------aFFG-------------vKP~~vlkgG~ia~a  457 (568)
T COG0804         405 IAKYTINPAITHGISHEVGSVEVGKLADLVLWDP-----------AFFG-------------VKPELVLKGGMIAWA  457 (568)
T ss_pred             hhheecCHHHhcccchhccceeccceeeeeeech-----------hhcC-------------CCcceEEecceeeee
Confidence            99999999999999 8899999999999999993           2222             367889999988765

>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.9e-23  Score=181.46  Aligned_cols=342  Identities=20%  Similarity=0.236  Sum_probs=197.7

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccc-c----CCCCCCcccc---hHHHHHHHHhCCc
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH-L----DDPGRTEWEG---FPSGTKAAAAGGI   73 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H-~----~~~~~~~~~~---~~~~~~~~~~~Gv   73 (450)
                      ..|.|.|+||+|..|.+....     ...-+|++|.+++|||||.|+- +    ...+.-.|.-   +..-.+.++.+||
T Consensus        15 ~~gsv~i~DG~Ia~i~~g~s~-----~~~~~d~eGd~LLPGlIeLHtD~lE~~~~PRPgV~wp~~aAi~ahD~~l~~sGI   89 (377)
T COG3454          15 VNGSVLIRDGLIADIDEGISP-----LAAGIDGEGDYLLPGLIELHTDNLERFMTPRPGVRWPPIAAILAHDAQLAASGI   89 (377)
T ss_pred             eeeeEEEecceEeeeccccCc-----ccccccCCCCeecccchhhcchhhhcccCCCCCCCCCchHHHHHhhHHHHhcCh
Confidence            468999999999999886542     2567899999999999999993 2    2212223332   3344668899999


Q ss_pred             eEEEeCC---CCCCCCCCcHHHHHHHHHHHh-----cCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCC
Q 013050           74 TTLIDMP---LNSDPSTISTETLKLKVDAAE-----KRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI  145 (450)
Q Consensus        74 T~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  145 (450)
                      ||+++.-   ....+... ...+..+.+.+.     .....+-.++....-.....++.++++...+...+...+.+...
T Consensus        90 TTv~dal~iGd~~~gg~r-~~~~~~midaI~~~~~~g~lradHr~HlRcEvs~~~~l~~~e~~~~~p~v~LiSlMDH~PG  168 (377)
T COG3454          90 TTVLDALAIGDVRDGGLR-LENLRKMIDAIEEAQAAGRLRADHRLHLRCEVSHPATLPLFEDLMDHPRVKLISLMDHTPG  168 (377)
T ss_pred             hhHHhhhhcCcccCCccc-hHHHHHHHHHHHHHHhccchhhccceeeeeecCChhHHHHHHHHhcCCCeeEEEecCCCCC
Confidence            9999862   11122222 223444433332     12223333444444455667888999999887777777755321


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccC
Q 013050          146 NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTD  225 (450)
Q Consensus       146 ~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~  225 (450)
                      .. ...+.+..++..  .+|+++       +.......+.......-.       ..      ......+..++...   
T Consensus       169 Qr-Qf~~le~Y~~yy--~~k~~~-------s~~e~~~~i~~r~a~~~~-------y~------~~~r~~i~~~c~~r---  222 (377)
T COG3454         169 QR-QFANLEKYREYY--QGKRGL-------SDEEFAEFIEERQALSAR-------YS------DPNRQAIAALCRER---  222 (377)
T ss_pred             cc-hhhhHHHHHHHH--HhhcCC-------CHHHHHHHHHHHHHHHhh-------cc------cchHHHHHHHHHHc---
Confidence            11 112222222211  122222       111111111100000000       00      11234555555544   


Q ss_pred             CCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCC-ceEEcCCC-CChhhH--HHHHHHHh
Q 013050          226 GPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT-RFKCAPPI-RDAANK--EKLWEALM  301 (450)
Q Consensus       226 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~--~~l~~~~~  301 (450)
                          |+.+. .|   .+.+.+-+++....|+.+..  .|-.+........ .+. ..+..|++ +.....  -...++..
T Consensus       223 ----gI~lA-SH---DDaT~~hV~es~~~Gv~iAE--FPtT~eAA~asr~-~Gm~VlMGAPNivrGgSHsGNvsA~ela~  291 (377)
T COG3454         223 ----GIALA-SH---DDATVEHVAESHGLGVAIAE--FPTTVEAAKASRE-LGMQVLMGAPNIVRGGSHSGNVSARELAQ  291 (377)
T ss_pred             ----CCcee-cC---CcCcHHHHHHHHhcCeeEEe--CccHHHHHHHHHH-hCchhhcCCCceeccCCcccchhHHHHHh
Confidence                55443 34   22788888998888876665  3333322222111 232 23445554 333333  33356667


Q ss_pred             cCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCcccc
Q 013050          302 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAI  380 (450)
Q Consensus       302 ~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~~~~G~I~~  380 (450)
                      .|+.++++||+.|...                       ++..+.++. ...+|+.+|++|.|.|||+++|+.+.|+|+|
T Consensus       292 ~glLDiLsSDY~P~SL-----------------------l~A~F~La~~~~~~~lpqAvalvt~nPA~algl~DRG~Ia~  348 (377)
T COG3454         292 HGLLDILSSDYVPASL-----------------------LHAAFRLADLGSNISLPQAVALVTKNPARALGLTDRGRIAP  348 (377)
T ss_pred             CCceeeecccCCcHHH-----------------------HHHHHHHhhhhcccCHHHHHHHhccCHHHhcCCCccccccc
Confidence            8999999999987632                       233333332 2346899999999999999999977999999


Q ss_pred             CCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEE
Q 013050          381 GNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY  433 (450)
Q Consensus       381 G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~  433 (450)
                      |++||||.+..+.                ..        ..|+.||+.||-|+
T Consensus       349 GlrADlv~v~~~~----------------~v--------p~ir~vwr~G~rv~  377 (377)
T COG3454         349 GLRADLVRVRRDG----------------GV--------PVIRTVWRAGKRVA  377 (377)
T ss_pred             ccccceEEEecCC----------------CC--------ceeeeeeecceecC
Confidence            9999999887542                11        26899999999774

>COG3964 Predicted amidohydrolase [General function prediction only]

Probab=99.92  E-value=5.2e-23  Score=176.68  Aligned_cols=299  Identities=20%  Similarity=0.237  Sum_probs=186.5

Q ss_pred             eeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCC
Q 013050            4 RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNS   83 (450)
Q Consensus         4 ~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~   83 (450)
                      .+|.|.||||+++++. +.+   ...++||++|.+|.||+||.|+|.+..+-..   -..-.+.....|+||++|.+ +.
T Consensus        24 tniai~ngkIaa~~d~-~ap---a~tq~Ida~Gc~VspG~iDlHvHvy~ggt~~---~v~pd~~ga~~GvTTvVDAG-Sa   95 (386)
T COG3964          24 TNIAIINGKIAAADDY-PAP---AETQIIDADGCIVSPGLIDLHVHVYYGGTEG---GVRPDMYGAPNGVTTVVDAG-SA   95 (386)
T ss_pred             ceeeeecCeEEeccCc-CCC---hhheEEccCccEeccCeeeeeeEEecCCCcc---CcCHHHccccCCceEEEecC-Cc
Confidence            5789999999999943 322   3679999999999999999999997654322   12234566789999999997 22


Q ss_pred             CCCCCcHHHHHHHHHHHh---cCCceEEEEeccccCCC-c----cchHHHHHHHHc---CCcEEEEecccCCCCCCCCCC
Q 013050           84 DPSTISTETLKLKVDAAE---KRIYVDVGFWGGLVPEN-A----YNASALEALLNA---GVLGLKSFMCPSGINDFPMTN  152 (450)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~  152 (450)
                        .......+........   ....++++..+-..... .    -....+.+..++   -+.|+|.-+.......   ..
T Consensus        96 --Gaanf~gF~r~vie~Sr~RI~Aflnvs~~Gl~a~nE~~d~~nid~d~i~aa~reh~d~ivGlKvR~s~~~~g~---~G  170 (386)
T COG3964          96 --GAANFDGFYRTVIEASRVRIKAFLNVSPPGLTASNELYDPDNIDEDKIHAAFREHRDVIVGLKVRVSTEDIGE---YG  170 (386)
T ss_pred             --CccchhhHHHHhhcchhheeeeeeeccCcceeeehhhCChhhCCHHHHHHHHHhCcCcEEEEEEEeeeccccc---cC
Confidence              2344444444332221   23344444433221111 1    123455555553   3557776543332111   12


Q ss_pred             HHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCce
Q 013050          153 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH  232 (450)
Q Consensus       153 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~  232 (450)
                      -.-+....+.|+..++|+++|..++..                               ..+++++.+..-       ++-
T Consensus       171 itPl~la~~ia~~~klPlmvHigePp~-------------------------------~~dEvlerL~~G-------DIi  212 (386)
T COG3964         171 ITPLTLALRIANDLKLPLMVHIGEPPV-------------------------------LMDEVLERLRRG-------DII  212 (386)
T ss_pred             CchHHHHHHHHhhcCCceEEecCCCCc-------------------------------cHHHHHHhccCC-------cee
Confidence            223556777888999999999966442                               125566665532       455


Q ss_pred             EEEEecCCh------hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCC-e
Q 013050          233 LHIVHLSDA------SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-I  305 (450)
Q Consensus       233 ~~~~h~~~~------~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~  305 (450)
                      .||.|....      -.....+++++++|+..-.  ....-.                      .......+++..|. +
T Consensus       213 tHcfngkpn~~l~~dg~vr~~vrra~erGV~fD~--ghG~as----------------------fsf~vAr~aia~GllP  268 (386)
T COG3964         213 THCFNGKPNTILTDDGVVRAEVRRARERGVIFDA--GHGRAS----------------------FSFNVARRAIANGLLP  268 (386)
T ss_pred             eeeccCCCCCccccchhHHHHHHHHHhcceEEEc--cCCcce----------------------eeHHHHHHHHhcCCCc
Confidence            555554321      1455677777778753333  221100                      11122345566665 4


Q ss_pred             eEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCcc
Q 013050          306 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHAD  385 (450)
Q Consensus       306 ~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~AD  385 (450)
                      +.++||-....                .+.+.-..++-.+..+...|+++.++++++|.|||.+++++..|+|+||.+||
T Consensus       269 ~~ISSDlh~~~----------------~~n~Pv~dla~~mSKllalgmpl~~Vi~avT~npA~~i~l~~~gtLa~G~~aD  332 (386)
T COG3964         269 DIISSDLHTIT----------------KLNGPVYDLAWIMSKLLALGMPLTDVINAVTHNPAVLIGLAEIGTLAPGAFAD  332 (386)
T ss_pred             ceeeccceeee----------------ecCchHHHHHHHHHHHHHcCCcHHHHHHHHhcCHHHHhCccccCccCCCcccc
Confidence            78999965432                12223344555566677889999999999999999999998899999999999


Q ss_pred             EEEEeCCC
Q 013050          386 LVVWEPEA  393 (450)
Q Consensus       386 lvv~d~~~  393 (450)
                      |+||+...
T Consensus       333 ~tvf~lk~  340 (386)
T COG3964         333 ITVFKLKN  340 (386)
T ss_pred             eEEEEecc
Confidence            99999654

>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=1.8e-22  Score=181.26  Aligned_cols=92  Identities=23%  Similarity=0.303  Sum_probs=75.6

Q ss_pred             CCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEEC
Q 013050          352 GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISR  428 (450)
Q Consensus       352 gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~  428 (450)
                      -||++.+++..|..+|+.+|+.+.|.|.+|.+|||+|+|+....+..     .+... ..|..|+..   ..++..|.|+
T Consensus       473 ~l~Le~av~rmT~~~Ae~~GL~drGlvreG~rADl~viDp~~vr~~a-----~y~~~-~lPa~G~~~~~vn~~~vat~v~  546 (579)
T COG3653         473 LLSLERAVRRMTGELAEWFGLGDRGLVREGDRADLVVIDPHLVRDVA-----TYTEP-ALPAYGILRVMVNRNVVATGVG  546 (579)
T ss_pred             cccHHHHHHHHhccHHHHhCcccccccccccccceEEEccccccccc-----cccCc-cCCCCcceEEEEeccceeeecc
Confidence            39999999999999999999967999999999999999976533322     23344 567777554   3568888999


Q ss_pred             CeEEEecCcccC-CCCCccccc
Q 013050          429 GNLVYKEGNHAP-AACGSPILA  449 (450)
Q Consensus       429 G~~v~~~g~~~~-~~~g~~~~~  449 (450)
                      |.+.++||++++ ...||++|+
T Consensus       547 Gvvs~rdGe~tg~~~aGR~lR~  568 (579)
T COG3653         547 GVVSFRDGEFTGQVKAGRYLRA  568 (579)
T ss_pred             eeEEEecCcccCcccccchhcc
Confidence            999999999998 588999986

>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex

Probab=99.86  E-value=1.5e-19  Score=165.92  Aligned_cols=264  Identities=22%  Similarity=0.286  Sum_probs=158.8

Q ss_pred             eccceeecc-----ccCCCCCCccc---chHHHHHHHHhCCceEEEeCC-CC-CCCCCCcHHHHHHHHHHHh-----cCC
Q 013050           40 MPGLIDVHA-----HLDDPGRTEWE---GFPSGTKAAAAGGITTLIDMP-LN-SDPSTISTETLKLKVDAAE-----KRI  104 (450)
Q Consensus        40 ~PG~iD~H~-----H~~~~~~~~~~---~~~~~~~~~~~~GvT~~~~~~-~~-~~~~~~~~~~~~~~~~~~~-----~~~  104 (450)
                      +|||||.|+     |+.--+...|+   .+....+++.++||||+++.- .+ ..+.....+......+.+.     +..
T Consensus         1 lPG~vdlH~D~~E~~~~PRp~v~~~~~~a~~~~d~~~~a~GiTT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (325)
T cd01306           1 LPGLIDLHTDNLEKHVMPRPGVDWPMDIALAAHDRQLAAAGITTVFDALSFGDEEGGRRRLRNLRKLIDAIRELHARGVL   80 (325)
T ss_pred             CCCeEEecCcchhcccCCCCCCCCCHHHHHHHHHHHHHhcCcccceeeeEeccccCCcccHHHHHHHHHHHHHhhhCCcc
Confidence            699999999     33322222332   244556789999999999873 11 2222234555554444442     222


Q ss_pred             ceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCC---------------------------------CCCC
Q 013050          105 YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND---------------------------------FPMT  151 (450)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------------------------------~~~~  151 (450)
                      .++-..+........+..+.+..+++.+...+.+++.+....+                                 ....
T Consensus        81 ~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (325)
T cd01306          81 RADHRLHLRCELADPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAY  160 (325)
T ss_pred             hhhcceEEEEeecCccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Confidence            3344444444445566677888888877666666654321110                                 0012


Q ss_pred             CHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCc
Q 013050          152 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA  231 (450)
Q Consensus       152 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~  231 (450)
                      ..+.++++++.|+++|+++.+|.....                               +.++...+    .       |.
T Consensus       161 ~~~~~~~iv~~A~~~gl~vasH~d~~~-------------------------------~~v~~a~~----~-------Gv  198 (325)
T cd01306         161 APANRSELAALARARGIPLASHDDDTP-------------------------------EHVAEAHE----L-------GV  198 (325)
T ss_pred             CHHHHHHHHHHHHHCCCcEEEecCCCh-------------------------------HHHHHHHH----C-------CC
Confidence            346677777888888888888874321                               01112211    1       33


Q ss_pred             eEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCC
Q 013050          232 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSD  311 (450)
Q Consensus       232 ~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD  311 (450)
                      .+. .|.    .+.+.++.+++.|..+.... |. ...       .+          .......++++++.|+.++++||
T Consensus       199 ~~~-E~p----~t~e~a~~a~~~G~~vv~ga-pn-~lr-------g~----------s~~g~~~~~~ll~~Gv~~al~SD  254 (325)
T cd01306         199 VIS-EFP----TTLEAAKAARELGLQTLMGA-PN-VVR-------GG----------SHSGNVSARELAAHGLLDILSSD  254 (325)
T ss_pred             eec-cCC----CCHHHHHHHHHCCCEEEecC-cc-ccc-------Cc----------cccccHhHHHHHHCCCeEEEEcC
Confidence            322 232    34456666666776555421 11 000       00          01122345778889999999999


Q ss_pred             CCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeC
Q 013050          312 HSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEP  391 (450)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~  391 (450)
                      +.|..                       .+...+.+....+++++++++++|.|||+++|+++.|+|++|+.||||+++.
T Consensus       255 ~~p~s-----------------------ll~~~~~la~~~gl~l~eAl~~aT~nPA~~lGl~d~G~I~~G~~ADlvvvd~  311 (325)
T cd01306         255 YVPAS-----------------------LLHAAFRLADLGGWSLPEAVALVSANPARAVGLTDRGSIAPGKRADLILVDD  311 (325)
T ss_pred             CCcHh-----------------------HHHHHHHHHHHcCCCHHHHHHHHhHHHHHHcCCCCCCCcCCCCCCCEEEEeC
Confidence            86531                       1333445566788999999999999999999996579999999999999996


Q ss_pred             C
Q 013050          392 E  392 (450)
Q Consensus       392 ~  392 (450)
                      +
T Consensus       312 ~  312 (325)
T cd01306         312 M  312 (325)
T ss_pred             C
Confidence            5

C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.

>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F

Probab=99.85  E-value=1.7e-19  Score=168.25  Aligned_cols=295  Identities=26%  Similarity=0.289  Sum_probs=160.3

Q ss_pred             ecCCCEEeccceeeccc--cCCC--CCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEE
Q 013050           33 DYGEAVIMPGLIDVHAH--LDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV  108 (450)
Q Consensus        33 D~~g~~v~PG~iD~H~H--~~~~--~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (450)
                      |++|++|+|||||+|+|  +...  ...+.+......+.++.+|+|++++.+ ..     ....+......     ....
T Consensus         1 D~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~~~~-~~-----~~~~~~~~~~~-----~~~~   69 (304)
T PF13147_consen    1 DASGKYVLPGLIDLHVHGPLGRSEDGAPWAEQAAAASAAALAGGVTTVVDMP-GT-----NPEELNRARRR-----GAGY   69 (304)
T ss_dssp             E-TTSEEEE-EEEEEEECCSSCETTTEEHSSHHHHHHHHHHHTTEEEEEESS-SS-----SHHHHHHHHHH-----ESEE
T ss_pred             CCCCCEEccceeeeeeCCCcCCCCCCccchhhHHHHHHHHHhCCEeEEecCC-CC-----CchhhHHHHhh-----cccc
Confidence            79999999999999999  2221  222223455677889999999999875 22     22222222211     1111


Q ss_pred             EEeccccC-CCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcC-CcEEEecCChhhhhhhhhh
Q 013050          109 GFWGGLVP-ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK-RPLLVHAEMEKGSERHVKL  186 (450)
Q Consensus       109 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g-~~v~~H~~~~~~~~~~~~~  186 (450)
                      ........ ......+.+..........+...  +      .......+.+.++.+.+.+ +.+..|.... ........
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  140 (304)
T PF13147_consen   70 PGSGAGPRGTTIEELEALVDLIAAEGVGFVAA--Y------NGIEGPGLQAAIRAAHRAGVIKVVGHSPAD-GIEGAIAE  140 (304)
T ss_dssp             EEECESCCHHHHHHHHHHHHHHHHTEEEEESS--S------THHHHHHHHHHHHHHHHHTHEEEEEECHHH-HHHHHHHH
T ss_pred             ccccccccccchHHHHHHHHHHhhcCcceeec--c------ccCCHHHHHHHHHHHHhcCCeeeecccchh-hHHHHHHh
Confidence            11111111 11112233333333344343321  0      1245567777888888888 4555554332 21111111


Q ss_pred             ccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcch
Q 013050          187 EDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY  266 (450)
Q Consensus       187 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~  266 (450)
                      .. .....       . ........+..........       +..+++...... .....+......++......   .
T Consensus       141 ~~-~~~~~-------~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~  200 (304)
T PF13147_consen  141 GL-DAMEH-------I-LPHEVAEALHLAEALAQGA-------GPGLHCHVASDD-ATAEGVAIAHGFGLPPTPLH---L  200 (304)
T ss_dssp             HH-HTTHH-------S-THHHHHHHHHHHHHHHHHH-------THCEEEEETSSH-HHHHHHHHHHHTTHEEEEEE---H
T ss_pred             cc-cchhh-------h-hhhhHHHHHHHHHHhhhcc-------ccchhhhhhhhh-hhhHHHHHHHhhccccchHH---h
Confidence            10 00000       0 1111112222222222222       445555555543 33333444455554444322   0


Q ss_pred             hcccccccCCCCCceEEcCCCC--ChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHH
Q 013050          267 LAFSAEEIPDGDTRFKCAPPIR--DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVT  344 (450)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  344 (450)
                      +......   .+..+...|++.  .......+.++++.|+.+.++||+.+....                 .....+...
T Consensus       201 ~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~-----------------~~~~~~~~~  260 (304)
T PF13147_consen  201 LARDAAA---AGIRFKVLPPLRLDLREDRAALRELLEAGVPVALGSDHAPSSTE-----------------GSGDLLHEA  260 (304)
T ss_dssp             HHHHHHH---HGGGGEESSCHHHHTHHHHHHHHHHHHTTSSEEEEE-BBTTTTT-----------------CTTTHHHHH
T ss_pred             hHHHHHh---cCceeeeCCCccccchhhhHHHHHHHhCCCeEEEEcCCcccccc-----------------cccccchhh
Confidence            0000000   144567788776  777888889999999999999998765321                 223345566


Q ss_pred             HHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEE
Q 013050          345 WSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLV  387 (450)
Q Consensus       345 ~~~~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlv  387 (450)
                      ...+...|+|++++++++|.|||++||+ +++|+|++||+||||
T Consensus       261 ~~~~~~~gl~~~~al~~~T~~pA~~lgl~~~~G~i~~G~~ADlv  304 (304)
T PF13147_consen  261 MRLAVRAGLSPEEALRAATSNPARILGLDDDKGSIAPGKDADLV  304 (304)
T ss_dssp             HHHHHHTSSTHHHHHHHHTHHHHHHTTBTTTSSSTSTTSB-EEE
T ss_pred             hhHHhhcCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCcC
Confidence            6667779999999999999999999999 889999999999997

...

>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []

Probab=99.77  E-value=2.5e-18  Score=162.93  Aligned_cols=43  Identities=35%  Similarity=0.461  Sum_probs=37.3

Q ss_pred             HHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEe
Q 013050          348 GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWE  390 (450)
Q Consensus       348 ~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d  390 (450)
                      +.+.+++++++++|+|.|||++||+ +++|+|++||+|||||||
T Consensus       290 ~~~~~~~~~~~l~~aT~n~Ak~lg~~~~~G~i~~G~~ADlvv~D  333 (333)
T PF01979_consen  290 FVRLGISPEEALKMATINPAKILGLDDDKGSIEPGKDADLVVLD  333 (333)
T ss_dssp             HHHHHSHHHHHHHHHTHHHHHHTTSTTTSSSSSTTSB--EEEEE
T ss_pred             cccccccccccccccchhHHHHcCCCCCEEEeCcCCCcCEEEeC
Confidence            3344499999999999999999999 889999999999999997

The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....

>KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]

Probab=99.72  E-value=3.8e-16  Score=132.53  Aligned_cols=69  Identities=29%  Similarity=0.367  Sum_probs=59.4

Q ss_pred             HHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCce
Q 013050          340 VLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR  417 (450)
Q Consensus       340 ~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (450)
                      .+..+.++ .+.-|.|.+-|+++||..||++||+ +++|++..|..||||++|.+                         
T Consensus       335 pMd~CvRhf~kATgCs~e~AleaAtlhPAqlLg~ek~KGTLDfG~dADFVllDd~-------------------------  389 (407)
T KOG3892|consen  335 PMDVCVRHFLKATGCSMESALEAATLHPAQLLGLEKSKGTLDFGADADFVLLDDS-------------------------  389 (407)
T ss_pred             CcHHHHHHHHHhcCCcHHHHHhhhccChHHhhccccccccccccccCceEEEccc-------------------------
Confidence            34555555 4566999999999999999999999 88999999999999999944                         


Q ss_pred             EeeEEEEEEECCeEEEec
Q 013050          418 LSGKVLATISRGNLVYKE  435 (450)
Q Consensus       418 ~~~~v~~v~v~G~~v~~~  435 (450)
                        -.|..||+.|+.||+-
T Consensus       390 --l~V~aT~isG~~V~~a  405 (407)
T KOG3892|consen  390 --LHVQATYISGELVWQA  405 (407)
T ss_pred             --eEEEEEEEccEEEEec
Confidence              2789999999999974

>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]

Probab=99.70  E-value=2.5e-16  Score=153.13  Aligned_cols=243  Identities=21%  Similarity=0.189  Sum_probs=130.1

Q ss_pred             HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHh-cCCceEEEEec------cccCCCccchHHHHHHH---H-cCC
Q 013050           65 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE-KRIYVDVGFWG------GLVPENAYNASALEALL---N-AGV  133 (450)
Q Consensus        65 ~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---~-~g~  133 (450)
                      ...+.+.|+|++.++.   .......+.+..+.+... ....+++..+.      .+.+........+.+..   + .|.
T Consensus       136 ~~~~~a~GiTt~~d~~---~~~~~~~~~~~~~~~l~~~~~l~~rv~~~~~~~~vk~~~dg~~~~~~a~~~~~~~~~~~g~  212 (404)
T PF07969_consen  136 AMAAGAYGITTVLDYG---GGFASDPEDLEALRELAAEGGLPLRVHLYPRIGGVKIFADGSPGGRTALLEEPYYADEPGA  212 (404)
T ss_dssp             HHHHCHTCEEEETTCE---CCCGEHHHHHHHHHHHHHCTC--SEEEEEEEEEEEEEESSSSTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHhcCCCeEEecCCc---cccCCCHHHHHHHHHHhhhcCCCeeeeeecccCceeeccccccccchhhhccccccCcccc
Confidence            3356678999999885   112233444444444333 23344544332      12233332222332222   2 222


Q ss_pred             cEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHH
Q 013050          134 LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR  213 (450)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  213 (450)
                       ....       .+.+..+.+.+.++++.|.+.|+++.+|+...                                ..+.
T Consensus       213 -~~~~-------~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd--------------------------------~a~~  252 (404)
T PF07969_consen  213 -PVHI-------SGLPSFDPEELEELVRAAREAGLQVAVHAIGD--------------------------------RAID  252 (404)
T ss_dssp             -EEEE-------TC--SSSHHHHHHHHHHHHHCT-EEEEEEESH--------------------------------HHHH
T ss_pred             -cccc-------cccccccchhHHHHHHHHHhcCCeeEEEEcCC--------------------------------chHH
Confidence             2221       33456778889999999999999999999332                                2355


Q ss_pred             HHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCC--CChh
Q 013050          214 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI--RDAA  291 (450)
Q Consensus       214 ~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  291 (450)
                      .+++..+..       .....+.|+..  ...+.++.+++.++.  .+..+.++.......        ..+.+  ....
T Consensus       253 ~~l~a~~~~-------~~~~~i~h~~~--~~~~~~~~~~~l~~~--~~~~p~~~~~~~~~~--------~~~~~~~~~~~  313 (404)
T PF07969_consen  253 EALDAIEAA-------RARGRIEHAEL--IDPDDIERMAELGVT--ASVQPHFLFSWGGEW--------YEERLGPERAR  313 (404)
T ss_dssp             HHHHHHHHH-------TCCHEEEEHCB--CCHHHHHHHHHHTTE--EEECCTHHHHETEET--------HHHHHHHHCGG
T ss_pred             hHHHHHHhh-------cccceeecccc--CCHHHHHHHHHhCCc--cccChhHhhhccchh--------hhhhhhhHHHH
Confidence            566666554       22225667764  344455555555544  444554333221000        00000  0011


Q ss_pred             hHHHHHHHHhcCCeeEEcCCCCC--CChhhhcccCCCccccCCCCcchhhHHHHHHHH-HH---------hcCCCHHHHH
Q 013050          292 NKEKLWEALMDGHIDMLSSDHSP--TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GR---------KYGVTLEQLA  359 (450)
Q Consensus       292 ~~~~l~~~~~~g~~~~~gtD~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~---------~~gls~~~al  359 (450)
                      ....+...++.|+.++++||+..  .++...+                   ....... ..         +..+|++|++
T Consensus       314 ~~~~~~~~~~~Gv~v~~gsD~p~~~~~P~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ls~~eAl  374 (404)
T PF07969_consen  314 RIYPIRSLLDAGVRVALGSDAPVSPPNPFRGI-------------------WAAVTRQMAGERSGPVLGPEQRLSLEEAL  374 (404)
T ss_dssp             GBTHHHHHHHCTTEEEE--TTTTSSCCHHHHH-------------------HHHHHHHHCHHTHHHCCGGTGSSHHHHHH
T ss_pred             HHhHHHHHHhccCceecCcCCcccccCcchhh-------------------hhhhccccccccccccccccccCCHHHHH
Confidence            12446778899999999999642  2222110                   0111111 11         2679999999


Q ss_pred             HHHhhchhHHhCC-CCCCccccCCCccEEE
Q 013050          360 SWWSERPAKLAGQ-VSKGAIAIGNHADLVV  388 (450)
Q Consensus       360 ~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv  388 (450)
                      +++|.|||+.+|+ +.+|+|+|||.|||||
T Consensus       375 ~~~T~~~A~~~g~~~~~Gsl~~Gk~AD~vV  404 (404)
T PF07969_consen  375 RAYTSNPARALGLEDRKGSLEPGKLADFVV  404 (404)
T ss_dssp             HHTTHHHHHHTT-TTTSSSSSTTSBS-EEE
T ss_pred             HHHhHHHHHHcCCCCCcceECCCCCcCeEC
Confidence            9999999999999 6669999999999997

Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....

>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]

Probab=99.65  E-value=1.8e-14  Score=129.26  Aligned_cols=84  Identities=25%  Similarity=0.349  Sum_probs=64.7

Q ss_pred             CCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeE
Q 013050          353 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNL  431 (450)
Q Consensus       353 ls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~  431 (450)
                      +++.|+..+.-.+||+.||+ +..|.|.+|.+||+.|+|.+|..--++. +       +.-.+ .. -+.-..|+.+|+|
T Consensus       438 ~t~~eia~~TRa~~ak~lgl~e~kGhLg~GadadIaiYdlnP~~vDps~-d-------ye~v~-ka-f~~A~ytlK~GeI  507 (575)
T COG1229         438 LTLYELAIMTRANPAKVLGLSERKGHLGVGADADIAIYDLNPEQVDPSN-D-------YEKVE-KA-FRKAAYTLKGGEI  507 (575)
T ss_pred             ccHHHHHHHHhcChhhhcccccccCccCcCccCceEEEecChhhcCCcc-c-------HHHHH-HH-HhheeEEecCceE
Confidence            78999999999999999999 7799999999999999998873221111 1       11000 00 1356789999999


Q ss_pred             EEecCcccCCCCCcc
Q 013050          432 VYKEGNHAPAACGSP  446 (450)
Q Consensus       432 v~~~g~~~~~~~g~~  446 (450)
                      |+++|+++.+..||-
T Consensus       508 vvkdGeiv~~p~grT  522 (575)
T COG1229         508 VVKDGEIVAEPEGRT  522 (575)
T ss_pred             EEecceEEecccCce
Confidence            999999998887873

>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B

Probab=99.62  E-value=1.9e-15  Score=106.22  Aligned_cols=68  Identities=35%  Similarity=0.658  Sum_probs=48.7

Q ss_pred             EEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEE
Q 013050            6 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTL   76 (450)
Q Consensus         6 V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~   76 (450)
                      |+|+||||++|++....+.  +..+++|++|++|+|||||+|+|+..+.... .........++++||||+
T Consensus         1 V~I~~g~I~~v~~~~~~~~--~~~~viD~~g~~v~PG~ID~H~H~~~~~~~~-~~~~~~~~~~l~~GvTTV   68 (68)
T PF13594_consen    1 VLIEDGKIVAVGPDSELPA--DAAEVIDAKGKYVMPGFIDMHTHLGEPGWQS-LDPETEAAAALAGGVTTV   68 (68)
T ss_dssp             EEEETTEEEEEESSCCTTS--TCCEEEEETTCEEEE-EEEEEE-TTTTCEGG-CTCHHHHHHHHHTTEEEE
T ss_pred             CEEECCEEEEeCCCCCCCC--CCCEEEECCCCEEeCCeEeeeeccccccccc-cchhhHHHHHHCcceeeC
Confidence            7899999999965544332  4667899999999999999999987332111 112455667789999996

...

>PRK06886 hypothetical protein; Validated

Probab=99.57  E-value=2.3e-12  Score=119.08  Aligned_cols=245  Identities=12%  Similarity=0.017  Sum_probs=133.9

Q ss_pred             HHHHHhCCceEEEeCCCCCCC--CCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEeccc
Q 013050           65 TKAAAAGGITTLIDMPLNSDP--STISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCP  142 (450)
Q Consensus        65 ~~~~~~~GvT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  142 (450)
                      .+.++++|+|.++.+. ...+  ....++.+....+.......+.+..++..--..+...+.+.+..+. +.-+... .+
T Consensus        75 l~~~~~~Gtt~iRtHv-dvd~~~~l~~~~a~~~~r~~~~~~idlq~vafPq~g~~~~~~~~l~~~al~~-advvGGi-P~  151 (329)
T PRK06886         75 IELMISQGVTAFGTFV-DIDPICEDRAIIAAHKAREVYKHDIILKFANQTLKGVIEPTAKKWFDIGSEM-VDMIGGL-PY  151 (329)
T ss_pred             HHHHHHcCcccEeeee-ccCCCccccHHHHHHHHHHHhcCcceEEEEecChhhccCccHHHHHHHHHHh-CCEEeCc-cC
Confidence            4477889999999996 4444  4566777777777776665665543321111112223344444333 3222222 11


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhh
Q 013050          143 SGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDT  222 (450)
Q Consensus       143 ~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~  222 (450)
                      .. ......+.+.+..++++|+++|++|.+|+.+...                        +.   ...++.+.+...+.
T Consensus       152 ~~-~~~~~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~------------------------~~---~~~le~l~~~~~~~  203 (329)
T PRK06886        152 RD-ELDYGRGLEAMDILLDTAKSLGKMVHVHVDQFNT------------------------PK---EKETEQLCDKTIEH  203 (329)
T ss_pred             Cc-CCCCCCCHHHHHHHHHHHHHcCCCeEEeECCCCc------------------------hh---HHHHHHHHHHHHHc
Confidence            10 0112356788999999999999999999965322                        11   11233333333322


Q ss_pred             ccCCCCCCceEEEEecCCh-----hHHHHHHHHHHhCCCcEEEecCcchhc-ccccccCCCCCceEEcCCCCChhhHHHH
Q 013050          223 RTDGPAEGAHLHIVHLSDA-----SSSLDLLMEAKTNGDSITVETCPHYLA-FSAEEIPDGDTRFKCAPPIRDAANKEKL  296 (450)
Q Consensus       223 ~~~~~~~~~~~~~~h~~~~-----~~~~~~~~~~~~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l  296 (450)
                         +.  ..++.+.|+...     ....+.++.+++.|+.+..  +|.... +....        ... |++  .....+
T Consensus       204 ---Gl--~grV~~sH~~~L~~~~~~~~~~~i~~La~agi~Vv~--~P~snl~l~~~~--------~~~-p~~--rGv~pv  265 (329)
T PRK06886        204 ---GM--QGRVVAIHGISIGAHSKEYRYRLYQKMREADMMVIA--CPMAWIDSNRKE--------DLM-PFH--NALTPA  265 (329)
T ss_pred             ---CC--CCCEEEEEeccccCcChhhHHHHHHHHHHcCCeEEE--Cchhhhhhcccc--------ccC-cCC--CCCCCH
Confidence               22  336888888643     1344567778888877766  554321 11100        000 111  112235


Q ss_pred             HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          297 WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       297 ~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      .++++.|+.+++|||+.. +++.           |.|....-..+..... .. .-.++.++++|+|.|||++||+
T Consensus       266 ~eL~~aGV~V~lGtDnv~-D~~~-----------p~g~~Dmle~~~l~~~-~~-~~~~~~~~l~maT~~gAraLgl  327 (329)
T PRK06886        266 DEMIPEGITVALGTDNIC-DYMV-----------PLCEGDMWQELSLLAA-GC-RFYDLDEMVNIASINGRKVLGL  327 (329)
T ss_pred             HHHHHCCCeEEEecCCCc-ccCC-----------CCCCCCHHHHHHHHHH-Hc-CCCCHHHHHHHHhhhHHHHhCC
Confidence            677889999999999742 1111           1121211111121111 11 1247899999999999999997

>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=99.55  E-value=3.7e-13  Score=123.58  Aligned_cols=246  Identities=24%  Similarity=0.288  Sum_probs=139.3

Q ss_pred             ceeeccccCCCCCCc------------------ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 013050           43 LIDVHAHLDDPGRTE------------------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI  104 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~------------------~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (450)
                      |||+|+|+..+....                  ..........++.+|||++++++ ...+............+.+....
T Consensus         1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~-~~~~~~~~~~~~~~~~~~~~~~~   79 (275)
T cd01292           1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMG-STPPPTTTKAAIEAVAEAARASA   79 (275)
T ss_pred             CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeE-eecCccccchHHHHHHHHHHHhc
Confidence            799999986543221                  12244567788999999999986 33332222233333333333321


Q ss_pred             ceEEEEeccccCCCc--------cchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 013050          105 YVDVGFWGGLVPENA--------YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM  176 (450)
Q Consensus       105 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~  176 (450)
                      .++............        ...+.+.++.+.|+.+++.+.....    ...+.+.++++++.|+++|+++.+|+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~i~~H~~~  155 (275)
T cd01292          80 GIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGLKLAGPYTA----TGLSDESLRRVLEEARKLGLPVVIHAGE  155 (275)
T ss_pred             CeeeEEeccCCCCccccchhHHHHHHHHHHHHHhcCCeeEeeCCCCCC----CCCCcHHHHHHHHHHHHcCCeEEEeeCC
Confidence            334433322222211        1123333333347888887543321    0147899999999999999999999954


Q ss_pred             hhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCC
Q 013050          177 EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD  256 (450)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~  256 (450)
                      ....                            ...+..+++....        +.++.+.|+...  ..+.++.+++.|+
T Consensus       156 ~~~~----------------------------~~~~~~~~~~~~~--------~~~~~~~H~~~~--~~~~~~~~~~~g~  197 (275)
T cd01292         156 LPDP----------------------------TRALEDLVALLRL--------GGRVVIGHVSHL--DPELLELLKEAGV  197 (275)
T ss_pred             cccC----------------------------ccCHHHHHHHHhc--------CCCEEEECCccC--CHHHHHHHHHcCC
Confidence            3310                            0013444444431        456888898862  3345566666664


Q ss_pred             cEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcc
Q 013050          257 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS  336 (450)
Q Consensus       257 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~  336 (450)
                        .+++||.......                ........+.++++.|..++++||+.+......                
T Consensus       198 --~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~~~lgTD~~~~~~~~~----------------  243 (275)
T cd01292         198 --SLEVCPLSNYLLG----------------RDGEGAEALRRLLELGIRVTLGTDGPPHPLGTD----------------  243 (275)
T ss_pred             --eEEECCccccccc----------------CCcCCcccHHHHHHCCCcEEEecCCCCCCCCCC----------------
Confidence              4444775443221                011223345677888999999999754421000                


Q ss_pred             hhhHHHHHHHH---HHhcCCCHHHHHHHHhhchhHH
Q 013050          337 LQFVLPVTWSY---GRKYGVTLEQLASWWSERPAKL  369 (450)
Q Consensus       337 ~~~~~~~~~~~---~~~~gls~~~al~~aT~~~A~~  369 (450)
                          +...++.   ....++|.+++++++|.|||++
T Consensus       244 ----~~~~~~~~~~~~~~~~~~~~~~~~~t~n~a~~  275 (275)
T cd01292         244 ----LLALLRLLLKVLRLGLSLEEALRLATINPARA  275 (275)
T ss_pred             ----HHHHHHHHHHHHhcCCCHHHHHHHHhccccCC
Confidence                1111121   2233489999999999999973

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.

>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases

Probab=99.54  E-value=4.3e-13  Score=122.15  Aligned_cols=136  Identities=18%  Similarity=0.220  Sum_probs=76.1

Q ss_pred             HHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEE
Q 013050          156 IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHI  235 (450)
Q Consensus       156 l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  235 (450)
                      ++++++.|+++|+++.+|+.+...          ..          +      ...++.+.++       ++  ....|+
T Consensus       127 l~~~~~~A~~~g~~v~~H~~e~~~----------~~----------g------~~~i~~~~~~-------~~--~~i~H~  171 (263)
T cd01305         127 LEDILELLRRRGKLFAIHASETRE----------SV----------G------MTDIERALDL-------EP--DLLVHG  171 (263)
T ss_pred             HHHHHHHHHHCCCeeEEecCCCCC----------CC----------C------chhHHHHHhC-------CC--CEEEEc
Confidence            999999999999999999954321          00          0      0113333332       11  333444


Q ss_pred             EecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC
Q 013050          236 VHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT  315 (450)
Q Consensus       236 ~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~  315 (450)
                      .|++.     +.++.+++.|+.+..  ||......       +            .....+.++++.|+.+++|||....
T Consensus       172 ~~l~~-----~~~~~la~~g~~v~~--~P~sn~~l-------~------------~g~~p~~~l~~~Gv~v~lGtD~~~~  225 (263)
T cd01305         172 THLTD-----EDLELVRENGVPVVL--CPRSNLYF-------G------------VGIPPVAELLKLGIKVLLGTDNVMV  225 (263)
T ss_pred             CCCCH-----HHHHHHHHcCCcEEE--ChhhHHHh-------C------------CCCCCHHHHHHCCCcEEEECCCCcc
Confidence            44332     357777778876665  66432110       0            0011245778899999999996443


Q ss_pred             ChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHH
Q 013050          316 VPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKL  369 (450)
Q Consensus       316 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~  369 (450)
                      +...                .... +........ ...++++++++++|.|||++
T Consensus       226 ~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~  263 (263)
T cd01305         226 NEPD----------------MWAE-MEFLAKYSRLQGYLSPLEILRMATVNAAEF  263 (263)
T ss_pred             CCCC----------------HHHH-HHHHHHHhcccccCCHHHHHHHHhhccccC
Confidence            2111                0111 111110000 11469999999999999973

These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.

>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]

Probab=99.53  E-value=1.3e-11  Score=107.28  Aligned_cols=293  Identities=20%  Similarity=0.264  Sum_probs=194.7

Q ss_pred             EEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceE--EEEecccc
Q 013050           38 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD--VGFWGGLV  115 (450)
Q Consensus        38 ~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  115 (450)
                      +-+....|.|.|+.+..      +....-...+-++...+.|| +..|..........+.+++....+..  +-..-...
T Consensus         5 l~i~rPdDwHlHLRdg~------mL~~V~p~ts~~f~rAiIMP-NL~pPvtt~~~a~aYr~rIl~a~p~~~~F~PLMtlY   77 (344)
T COG0418           5 LTIRRPDDWHLHLRDGA------MLKAVVPYTSRGFGRAIIMP-NLVPPVTTVADALAYRERILKAVPAGHRFTPLMTLY   77 (344)
T ss_pred             eeccCccceeEEecCcc------HHHHhhhhhhhhcceEEEcC-CCCCCcccHHHHHHHHHHHHHhCcCCCCCceeEEEE
Confidence            34677889999998764      33333333445888889999 77777766666666666554322211  11111111


Q ss_pred             CCCccchHHHHHHHHcC-CcEEEEecccCCC-CCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCc
Q 013050          116 PENAYNASALEALLNAG-VLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT  193 (450)
Q Consensus       116 ~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~  193 (450)
                      -.+....+++.+..++| +.++|.|...... +.....+-+.+...++..++.|+++.+|-+....          +.|.
T Consensus        78 Ltd~~~peel~~a~~~g~i~a~KlYPaGaTTNS~~GV~~~~~~~pvle~Mq~~gmpLlvHGEvt~~----------~vDi  147 (344)
T COG0418          78 LTDSTTPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDA----------EVDI  147 (344)
T ss_pred             ecCCCCHHHHHHHHhcCcEEEEEeccCCccccCcCCcCcHHHHHHHHHHHHHcCCeEEEecccCCc----------cccc
Confidence            22334467788888887 7889998532111 1112345788889999999999999999976543          2221


Q ss_pred             cccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccc
Q 013050          194 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE  273 (450)
Q Consensus       194 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~  273 (450)
                      .           ..|...++.+++-..+.     ++..++.+.|+++. +..+.++...   ..+...+++|++.++.++
T Consensus       148 f-----------drE~~Fi~~vl~pl~~~-----fP~LKIV~EHiTT~-dav~~v~~~~---~nlaATIT~hHL~~nrnd  207 (344)
T COG0418         148 F-----------DREAAFIESVLEPLRQR-----FPKLKIVLEHITTK-DAVEYVKDAN---NNLAATITPHHLLLNRND  207 (344)
T ss_pred             h-----------hhHHHHHHHHHHHHHhh-----CCcceEEEEEeccH-HHHHHHHhcC---cceeeEeehhheeeehhh
Confidence            1           13445677777777665     77999999999998 8888888763   347778899999999988


Q ss_pred             cCCCC--CceEEcCCCCChhhHHHHHHHHhcC-CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh
Q 013050          274 IPDGD--TRFKCAPPIRDAANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK  350 (450)
Q Consensus       274 ~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  350 (450)
                      +.-.+  ..+-+.|-++...++.++.++.-.| ..+.+|||+.|+....+.-.     +...|+......++.+.+...+
T Consensus       208 ~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSAPH~~~~Ke~~-----cgcAG~fsap~al~~~AevFE~  282 (344)
T COG0418         208 MLVGGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDSAPHARSRKESA-----CGCAGIFSAPFALPLYAEVFEE  282 (344)
T ss_pred             hhcCCCCcceeeeccccchhhHHHHHHHHhcCCCcEEecCCCCCCcccccccc-----cccccccccHhHHHHHHHHHHH
Confidence            76555  4566777778888999987766654 56899999999977766432     1112444444445555444444


Q ss_pred             cCCCHHHHHHHHhhchhHHhCCC
Q 013050          351 YGVTLEQLASWWSERPAKLAGQV  373 (450)
Q Consensus       351 ~gls~~~al~~aT~~~A~~lg~~  373 (450)
                      . -.++..=..++.||.+++|++
T Consensus       283 ~-naL~~LeaF~S~nGp~fY~lp  304 (344)
T COG0418         283 E-NALDNLEAFASDNGPKFYGLP  304 (344)
T ss_pred             h-cHHHHHHHHHhhcCcceeccc
Confidence            3 355666677899999999993

>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]

Probab=99.28  E-value=6.1e-10  Score=93.50  Aligned_cols=289  Identities=17%  Similarity=0.196  Sum_probs=182.4

Q ss_pred             EeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CceEEEEeccccCC
Q 013050           39 IMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVPE  117 (450)
Q Consensus        39 v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  117 (450)
                      -+|+.-|+|+|+.+..+.     ..........|+.....|| +..|..........+.+.+... +...+-..  +.-.
T Consensus         6 ~i~~~~DmHvHlR~g~ml-----~aVvP~~a~ggvs~AyvMP-NL~PPiTt~da~i~YkK~i~kL~skttfLMs--lYLs   77 (344)
T KOG2902|consen    6 TITQPDDMHVHLRDGDML-----HAVVPHSASGGVSRAYVMP-NLKPPITTTDAAIIYKKFIMKLPSKTTFLMS--LYLS   77 (344)
T ss_pred             ecCCccceeEEeccCCee-----eeeccccccCceeEEEEcC-CCCCCcchHHHHHHHHHHHHhcCccceeEEE--Eeec
Confidence            478999999999876432     2233455678899999999 8888777766665555555431 11222221  1222


Q ss_pred             CccchHHHHHHHHc-CCcEEEEecccCC---CCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCc
Q 013050          118 NAYNASALEALLNA-GVLGLKSFMCPSG---INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT  193 (450)
Q Consensus       118 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~  193 (450)
                      .....+.+++..++ ++.+++.|..-..   .++.. .....+.-.+++.++.|+++.+|-+-+..+.          ++
T Consensus        78 ~~ttPe~I~eAa~~~~irgVK~YPaGaTTNS~~GV~-~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D----------~~  146 (344)
T KOG2902|consen   78 DKTTPEEIREAAESGVIRGVKLYPAGATTNSQDGVT-DLFGKFYPVFEAMQEQNMPLNVHGEVPPSID----------GH  146 (344)
T ss_pred             CCCCHHHHHHHHHhCceeeEEeccCccccccccccc-ccchhhhHHHHHHHHcCceEEecCCCCCccC----------Cc
Confidence            33446678888886 5678888752211   11211 1356677889999999999999986554311          11


Q ss_pred             cccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccc
Q 013050          194 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE  273 (450)
Q Consensus       194 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~  273 (450)
                                --..|...+..++.+.++      ++..++.+.||.+. +.++.++.++.-  .+...+.+++++++..+
T Consensus       147 ----------Vf~aE~~Flptll~Lhqr------fP~LKivlEHcTt~-dAv~~ve~a~~~--sVaaTvTahHL~Lt~~d  207 (344)
T KOG2902|consen  147 ----------VFDAEKIFLPTLLQLHQR------FPQLKIVLEHCTTM-DAVNFVESAKEG--SVAATVTAHHLLLTRND  207 (344)
T ss_pred             ----------eecchhhhHHHHHHHHHh------CccceeHHHhcccH-HHHHHHHhhcCC--ceeeEeehheeEEehhh
Confidence                      001234456777776665      66889999999998 888888886543  45666699999999887


Q ss_pred             cCCCCCceEEcCCCCChhhHHHHHHHHhcC-CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcC
Q 013050          274 IPDGDTRFKCAPPIRDAANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG  352 (450)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g  352 (450)
                      +.. +...-+.|-.+...+++++.++.-.| ..+.+|||+.|+....+....     .-.|++.....++.+.+...+.|
T Consensus       208 wqg-~P~nfCkPVaK~e~dr~AlvkAatSg~pkFFfGsDSAPHprs~K~~~~-----~cAGvysqpfA~sy~A~VFde~g  281 (344)
T KOG2902|consen  208 WQG-QPHNFCKPVAKREIDREALVKAATSGSPKFFFGSDSAPHPRSRKESSC-----GCAGVYSQPFALSYYAKVFDEAG  281 (344)
T ss_pred             hcC-CCcccccccccCcccHHHHHHHHhcCCCceeecCCCCCCcccccccCC-----CcceeecccchHHHHHHHHhhhc
Confidence            433 33334455556778888887666554 568999999999877764321     11244444444444444444443


Q ss_pred             CCHHHHHHHHhhchhHHhCC
Q 013050          353 VTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       353 ls~~~al~~aT~~~A~~lg~  372 (450)
                       .++.+-..++.+|-.++++
T Consensus       282 -aLd~Lk~F~s~fG~~FY~~  300 (344)
T KOG2902|consen  282 -ALDKLKAFTSFFGPDFYGL  300 (344)
T ss_pred             -hHHHHhhhHhhcCcceecc
Confidence             3344444566778888888

>PRK10812 putative DNAse; Provisional

Probab=99.06  E-value=7.7e-08  Score=86.86  Aligned_cols=246  Identities=16%  Similarity=0.165  Sum_probs=133.7

Q ss_pred             ceeeccccCCCCCC-cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc--CCceEEEEeccccCCCc
Q 013050           43 LIDVHAHLDDPGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLVPENA  119 (450)
Q Consensus        43 ~iD~H~H~~~~~~~-~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  119 (450)
                      +||+|+|+..+.+. ..++......++...||..++..+       ...+......+.+..  .....++.|+..... .
T Consensus         3 ~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~-------~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~-~   74 (265)
T PRK10812          3 LVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVA-------TTLPGYRHMRDLVGERDNVVFSCGVHPLNQDE-P   74 (265)
T ss_pred             eEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeC-------CCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCC-h
Confidence            79999999753221 123567778888999999888775       223333333333332  233345555433322 2


Q ss_pred             cchHHHHHHHHc-CCcEEEE-ecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccc
Q 013050          120 YNASALEALLNA-GVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS  197 (450)
Q Consensus       120 ~~~~~~~~~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~  197 (450)
                      ...+.+.++++. .+.++.. ..++...........+.+++.+++|+++++||.+|.++..                   
T Consensus        75 ~~~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~-------------------  135 (265)
T PRK10812         75 YDVEELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRDAR-------------------  135 (265)
T ss_pred             hHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCch-------------------
Confidence            335556655543 3444422 2222100011123456688899999999999999996532                   


Q ss_pred             cccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC
Q 013050          198 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG  277 (450)
Q Consensus       198 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~  277 (450)
                                     +.++++.++....    ..+. +.|+.+  .+.+.++++.+.|..++......            
T Consensus       136 ---------------~~~l~iL~~~~~~----~~~~-v~H~fs--G~~~~a~~~~~~G~~is~~g~~t------------  181 (265)
T PRK10812        136 ---------------ADTLAILREEKVT----DCGG-VLHCFT--EDRETAGKLLDLGFYISFSGIVT------------  181 (265)
T ss_pred             ---------------HHHHHHHHhhcCC----CCCE-EEEeec--CCHHHHHHHHHCCCEEEECeeee------------
Confidence                           3444555432110    1122 357765  66777888877776555421110            


Q ss_pred             CCceEEcCCCCChhhHHHHHHHHhcCC--eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcCCC
Q 013050          278 DTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVT  354 (450)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls  354 (450)
                               .   .....+.+.++...  .+.+.||+ |+.......          |-..-...+....+.+ .-.|++
T Consensus       182 ---------~---~~~~~~~~~~~~ipldrlLlETD~-P~~~p~~~~----------g~~n~P~~i~~v~~~ia~l~g~~  238 (265)
T PRK10812        182 ---------F---RNAEQLRDAARYVPLDRLLVETDS-PYLAPVPHR----------GKENQPAMVRDVAEYMAVLKGVS  238 (265)
T ss_pred             ---------c---CccHHHHHHHHhCChhhEEEecCC-CCCCCcCCC----------CCCCCcHHHHHHHHHHHHHhCCC
Confidence                     0   01122333333332  46799995 443221110          1111122234333333 346899


Q ss_pred             HHHHHHHHhhchhHHhCC
Q 013050          355 LEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       355 ~~~al~~aT~~~A~~lg~  372 (450)
                      .+++.+..+.|+.+++++
T Consensus       239 ~eei~~~~~~N~~~lf~~  256 (265)
T PRK10812        239 VEELAQVTTDNFARLFHI  256 (265)
T ss_pred             HHHHHHHHHHHHHHHHCC
Confidence            999999999999999998

>cd01310 TatD_DNAse TatD like proteins; E

Probab=99.05  E-value=4.8e-08  Score=88.49  Aligned_cols=241  Identities=19%  Similarity=0.161  Sum_probs=124.2

Q ss_pred             ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCc---
Q 013050           43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA---  119 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  119 (450)
                      |+|+|+|+......  .+.....+.+..+|+++++.++ ..      ........+.+...  .++....++.+...   
T Consensus         1 ~~D~H~H~~~~~~~--~~~~~~l~~~~~~gv~~~v~~~-~~------~~~~~~~~~la~~~--~~i~~~~G~hP~~~~~~   69 (251)
T cd01310           1 LIDTHCHLDFPQFD--ADRDDVLARAREAGVIKIIVVG-TD------LKSSKRALELAKKY--DNVYAAVGLHPHDADEH   69 (251)
T ss_pred             CEEeeeCCCchhhc--cCHHHHHHHHHHcCCCEEEEeC-CC------HHHHHHHHHHHHhC--CCeEEEEeeCcchhhcC
Confidence            68999999765421  2356667788899999999885 11      11222222222222  12222222223221   


Q ss_pred             --cchHHHHHHHH-cCCcEEE-EecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050          120 --YNASALEALLN-AGVLGLK-SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS  195 (450)
Q Consensus       120 --~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~  195 (450)
                        ...+.+.+.++ .++.++. ....+...........+.++..++.|++++++|.+|+...                  
T Consensus        70 ~~~~~~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~------------------  131 (251)
T cd01310          70 VDEDLDLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDA------------------  131 (251)
T ss_pred             CHHHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCc------------------
Confidence              12455555554 3444552 2222111000001334678889999999999999999432                  


Q ss_pred             cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050          196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP  275 (450)
Q Consensus       196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~  275 (450)
                                      ...+++++++..     ....+. .|...  ...+.++++.+.|+.+..  ++....       
T Consensus       132 ----------------~~~~~~l~~~~~-----~~~~~i-~H~~~--~~~~~~~~~~~~g~~~~~--~~~~~~-------  178 (251)
T cd01310         132 ----------------HEDVLEILKEYG-----PPKRGV-FHCFS--GSAEEAKELLDLGFYISI--SGIVTF-------  178 (251)
T ss_pred             ----------------hHHHHHHHHhcC-----CCCCEE-EEccC--CCHHHHHHHHHcCCEEEe--eeeecc-------
Confidence                            134566666531     123344 45443  233566666666654443  322100       


Q ss_pred             CCCCceEEcCCCCChhhHHHHHHHHhcCC--eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcC
Q 013050          276 DGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYG  352 (450)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~g  352 (450)
                                  ....   .+.+..+...  .++++||+ |......         ..++ .+....+...+..+. ..|
T Consensus       179 ------------~~~~---~~~~~~~~~~~dril~~TD~-p~~~~~~---------~~~~-~~~~~~~~~~~~~la~~~g  232 (251)
T cd01310         179 ------------KNAN---ELREVVKEIPLERLLLETDS-PYLAPVP---------FRGK-RNEPAYVKHVAEKIAELKG  232 (251)
T ss_pred             ------------CCCH---HHHHHHHhCChHHEEEcccC-CCCCCCC---------CCCC-CCCChhHHHHHHHHHHHHC
Confidence                        0111   1122222222  46899995 3321111         0011 122233444444444 589


Q ss_pred             CCHHHHHHHHhhchhHHhC
Q 013050          353 VTLEQLASWWSERPAKLAG  371 (450)
Q Consensus       353 ls~~~al~~aT~~~A~~lg  371 (450)
                      ++.+++.++.+.|++++||
T Consensus       233 l~~e~~~~~~~~N~~~ll~  251 (251)
T cd01310         233 ISVEEVAEVTTENAKRLFG  251 (251)
T ss_pred             cCHHHHHHHHHHHHHHHhC
Confidence            9999999999999999986

coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.

>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]

Probab=99.02  E-value=1.2e-07  Score=84.01  Aligned_cols=245  Identities=18%  Similarity=0.188  Sum_probs=138.3

Q ss_pred             ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc--CCceEEEEecccc-CCCc
Q 013050           43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLV-PENA  119 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~  119 (450)
                      |||+|+|+....+  .++.......+...|++.++..+       ..........+.++.  .....++.++... ....
T Consensus         3 liDtH~HL~~~~~--~~d~~~vi~~a~~~gv~~~~~~g-------~~~~~~~~~~~la~~y~~v~~~~G~HP~~~~~~~~   73 (256)
T COG0084           3 LIDTHCHLDFEEF--DEDRDEVIARAREAGVKKMVVVG-------TDLEDFKRALELAEKYPNVYAAVGVHPLDADEHSE   73 (256)
T ss_pred             cEEeeeCCCchhh--cCCHHHHHHHHHHcCCcEEEEee-------cCHHHHHHHHHHHHhCCCeEEEEeeCCCccccccH
Confidence            7999999986332  24567778888999999999886       222333333333332  3334445544330 1113


Q ss_pred             cchHHHHHHHHc--CCcEEEEe-cccCCCCC-CCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050          120 YNASALEALLNA--GVLGLKSF-MCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS  195 (450)
Q Consensus       120 ~~~~~~~~~~~~--g~~~~~~~-~~~~~~~~-~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~  195 (450)
                      ...+.+.+++..  .+..+... .+|.-... ......+.+++-+++|+++++||.+|.++..                 
T Consensus        74 ~~~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~-----------------  136 (256)
T COG0084          74 EDLEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAH-----------------  136 (256)
T ss_pred             HHHHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccH-----------------
Confidence            445667777753  44444331 11110000 0011346688899999999999999997643                 


Q ss_pred             cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC-ceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccccc
Q 013050          196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG-AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI  274 (450)
Q Consensus       196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~  274 (450)
                                       +.+++.+++.       + ..--+.|+.+  .+.+..+++...|..++.....-   +     
T Consensus       137 -----------------~d~~~iL~~~-------~~~~~gi~HcFs--Gs~e~a~~~~d~G~yisisG~it---f-----  182 (256)
T COG0084         137 -----------------EDTLEILKEE-------GAPVGGVLHCFS--GSAEEARKLLDLGFYISISGIVT---F-----  182 (256)
T ss_pred             -----------------HHHHHHHHhc-------CCCCCEEEEccC--CCHHHHHHHHHcCeEEEECceee---c-----
Confidence                             5666676654       2 1233578887  78888888888886555422111   0     


Q ss_pred             CCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcCC
Q 013050          275 PDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGV  353 (450)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gl  353 (450)
                                   +.......+.+.+... .+.+.|| +|.....+..          |--.-...+......+ .-.|+
T Consensus       183 -------------k~a~~~~ev~~~iPld-rLL~ETD-sPyl~P~p~r----------GkrNeP~~v~~v~~~iAelk~~  237 (256)
T COG0084         183 -------------KNAEKLREVARELPLD-RLLLETD-APYLAPVPYR----------GKRNEPAYVRHVAEKLAELKGI  237 (256)
T ss_pred             -------------CCcHHHHHHHHhCCHh-HeEeccC-CCCCCCcCCC----------CCCCCchHHHHHHHHHHHHhCC
Confidence                         0111122222222211 2458999 5554433221          1111122233333333 34589


Q ss_pred             CHHHHHHHHhhchhHHhCC
Q 013050          354 TLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       354 s~~~al~~aT~~~A~~lg~  372 (450)
                      +++++.+..|.|.-+++++
T Consensus       238 ~~eeva~~t~~N~~~lf~~  256 (256)
T COG0084         238 SAEEVAEITTENAKRLFGL  256 (256)
T ss_pred             CHHHHHHHHHHHHHHHhcC
Confidence            9999999999999988874

>TIGR00010 hydrolase, TatD family

Probab=98.97  E-value=1.5e-07  Score=85.36  Aligned_cols=242  Identities=19%  Similarity=0.248  Sum_probs=120.9

Q ss_pred             ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCc---
Q 013050           43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA---  119 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  119 (450)
                      |||+|+|+......  .+.....+.+..+|+++++... . .     ........+..+.. + ++....++.+...   
T Consensus         1 ~iD~H~Hl~~~~~~--~~~~~~~~~~~~~Gv~~~v~~~-~-~-----~~~~~~~~~~~~~~-~-~i~~~~GihP~~~~~~   69 (252)
T TIGR00010         1 LIDAHCHLDFLDFE--EDVEEVIERAKAAGVTAVVAVG-T-D-----LEDFLRALELAEKY-P-NVYAAVGVHPLDVDDD   69 (252)
T ss_pred             CEEeccCCCChhhc--cCHHHHHHHHHHcCCCEEEEec-C-C-----HHHHHHHHHHHHHC-C-CEEEEEEeCcchhhcC
Confidence            69999998754321  1466777888899999999774 1 1     12223333323222 2 3333332333221   


Q ss_pred             --cchHHHHHHHH-cCCcEEEEe-cccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050          120 --YNASALEALLN-AGVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS  195 (450)
Q Consensus       120 --~~~~~~~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~  195 (450)
                        ...+++.+.++ .++.++... +.+...........+.+.+.++.|+++|++|.+|+....                 
T Consensus        70 ~~~~~~~l~~~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~-----------------  132 (252)
T TIGR00010        70 TKEDIKELERLAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARDAE-----------------  132 (252)
T ss_pred             CHHHHHHHHHHccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCcc-----------------
Confidence              22344444433 234444332 211100000001237788889999999999999995321                 


Q ss_pred             cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050          196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP  275 (450)
Q Consensus       196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~  275 (450)
                                       ..+++++++..   +  ...+ +.|...  .+.+.+.++.+.|+.+..  +....        
T Consensus       133 -----------------~~~~~~l~~~~---~--~~~~-i~H~~~--~~~~~~~~~~~~g~~~~~--~~~~~--------  177 (252)
T TIGR00010       133 -----------------EDVLDILREEK---P--KVGG-VLHCFT--GDAELAKKLLDLGFYISI--SGIVT--------  177 (252)
T ss_pred             -----------------HHHHHHHHhcC---C--CCCE-EEEccC--CCHHHHHHHHHCCCeEee--ceeEe--------
Confidence                             23445554320   1  2222 345553  455677777666654443  22100        


Q ss_pred             CCCCceEEcCCCCChhhHHHHHHHHhcC--CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHH-HHHhcC
Q 013050          276 DGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYG  352 (450)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g--~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~g  352 (450)
                                 ....   ..+.+.++..  -.++++||.. ......      +   .++.... ..+..... .....|
T Consensus       178 -----------~~~~---~~~~~~i~~~~~dril~~TD~p-~~~~~~------~---~~~~~~p-~~i~~~~~~~a~~~g  232 (252)
T TIGR00010       178 -----------FKNA---KSLREVVRKIPLERLLVETDSP-YLAPVP------Y---RGKRNEP-AFVRYTVEAIAEIKG  232 (252)
T ss_pred             -----------cCCc---HHHHHHHHhCCHHHeEecccCC-CCCCCC------C---CCCCCCC-hhHHHHHHHHHHHhC
Confidence                       0011   1122222222  2467999963 211000      0   0011111 12332222 233459


Q ss_pred             CCHHHHHHHHhhchhHHhCC
Q 013050          353 VTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       353 ls~~~al~~aT~~~A~~lg~  372 (450)
                      +|++++.++.+.|++++|++
T Consensus       233 ~~~~~~~~~~~~N~~~~~~~  252 (252)
T TIGR00010       233 MDVEELAQITTKNAKRLFGL  252 (252)
T ss_pred             cCHHHHHHHHHHHHHHHhCc
Confidence            99999999999999999975

Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.

>PRK11449 putative deoxyribonuclease YjjV; Provisional

Probab=98.91  E-value=3.9e-07  Score=81.99  Aligned_cols=249  Identities=18%  Similarity=0.194  Sum_probs=131.4

Q ss_pred             eccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc--CCceEEEEeccccCC
Q 013050           40 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLVPE  117 (450)
Q Consensus        40 ~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  117 (450)
                      .+.+||+|+|+....+.  ++......++...||+.++..+       .+........+....  .....++.++.....
T Consensus         2 ~~~~iD~HcHl~~~~~~--~~~~~~l~~a~~~gv~~~~~~~-------~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~   72 (258)
T PRK11449          2 ICRFIDTHCHFDFPPFS--GDEEASLQRAAQAGVGKIIVPA-------TEAENFARVLALAERYQPLYAALGLHPGMLEK   72 (258)
T ss_pred             CceEEEeccCCCChhhc--cCHHHHHHHHHHCCCCEEEEee-------CCHHHHHHHHHHHHhCCCEEEEEeeCcCcccc
Confidence            45689999999754322  3456667778889999998775       223333333333332  233344555433322


Q ss_pred             -CccchHHHHHHHHc---CCcEEEEe-cccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCC
Q 013050          118 -NAYNASALEALLNA---GVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD  192 (450)
Q Consensus       118 -~~~~~~~~~~~~~~---g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~  192 (450)
                       .....+.+.++++.   .+.++... .++...........+.+.+.+++|+++++||.+|+++..              
T Consensus        73 ~~~~~~~~l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~--------------  138 (258)
T PRK11449         73 HSDVSLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH--------------  138 (258)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCcc--------------
Confidence             22334555555431   23333221 111100000012446788899999999999999996533              


Q ss_pred             ccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccc
Q 013050          193 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE  272 (450)
Q Consensus       193 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~  272 (450)
                                          +.++++.++...     ..+. +.|+.+  .+.+.++++.+.|..++.  +....     
T Consensus       139 --------------------~~~~~il~~~~~-----~~~~-i~H~fs--G~~~~a~~~l~~G~~iS~--~g~it-----  183 (258)
T PRK11449        139 --------------------DKLAMHLKRHDL-----PRTG-VVHGFS--GSLQQAERFVQLGYKIGV--GGTIT-----  183 (258)
T ss_pred             --------------------HHHHHHHHhcCC-----CCCe-EEEcCC--CCHHHHHHHHHCCCEEEe--Ccccc-----
Confidence                                345555554310     1112 577777  567788888777765444  22100     


Q ss_pred             ccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhc
Q 013050          273 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKY  351 (450)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~  351 (450)
                              +      ........+.+.+... .+.+.||+ |......      +    .|-..-...+...+.. +.-.
T Consensus       184 --------~------~~~~~~~~~~~~ipld-riL~ETD~-P~l~p~~------~----~~~~n~p~~~~~~~~~ia~l~  237 (258)
T PRK11449        184 --------Y------PRASKTRDVIAKLPLA-SLLLETDA-PDMPLNG------F----QGQPNRPEQAARVFDVLCELR  237 (258)
T ss_pred             --------c------cCcHHHHHHHHhCChh-hEEEecCC-CCCCCCC------C----CCCCCCChHHHHHHHHHHHHH
Confidence                    0      0111111222222111 25799994 4422111      0    0111112233444433 4446


Q ss_pred             CCCHHHHHHHHhhchhHHhCC
Q 013050          352 GVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       352 gls~~~al~~aT~~~A~~lg~  372 (450)
                      +++++++.+..+.|..+++++
T Consensus       238 ~~~~~el~~~~~~N~~~lf~~  258 (258)
T PRK11449        238 PEPADEIAEVLLNNTYTLFNV  258 (258)
T ss_pred             CcCHHHHHHHHHHHHHHHhCc
Confidence            899999999999999999875

>PRK10425 DNase TatD; Provisional

Probab=98.88  E-value=5e-07  Score=81.21  Aligned_cols=252  Identities=12%  Similarity=0.078  Sum_probs=131.8

Q ss_pred             ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC--CceEEEEeccccCC-Cc
Q 013050           43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLVPE-NA  119 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~  119 (450)
                      |||+|+|+....+.  ++......++...||..++..+       .+.+......+.....  ....++.|+..... ..
T Consensus         1 ~iDtH~HL~~~~~~--~d~~~vl~~a~~~gv~~~i~~~-------~~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~~~~   71 (258)
T PRK10425          1 MFDIGVNLTSSQFA--KDRDDVVARAFAAGVNGMLITG-------TNLRESQQAQKLARQYPSCWSTAGVHPHDSSQWQA   71 (258)
T ss_pred             CEEeeeCcCChhhh--ccHHHHHHHHHHCCCCEEEEeC-------CCHHHHHHHHHHHHhCCCEEEEEEeCcCccccCCH
Confidence            68999999754332  4567778888899999888775       2233334444433322  33445555543322 22


Q ss_pred             cchHHHHHHHHc-CCcEEEE-ecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccc
Q 013050          120 YNASALEALLNA-GVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS  197 (450)
Q Consensus       120 ~~~~~~~~~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~  197 (450)
                      ...+.+.++.+. .+.++.. ..++...........+.+++.+++|+++++||.+|.++..                   
T Consensus        72 ~~~~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~-------------------  132 (258)
T PRK10425         72 ATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRDAH-------------------  132 (258)
T ss_pred             HHHHHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCch-------------------
Confidence            334555555542 2222221 1111100000112246688899999999999999996432                   


Q ss_pred             cccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC
Q 013050          198 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG  277 (450)
Q Consensus       198 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~  277 (450)
                                     +.++++.++..     +..+--+.|+.+  .+.+.++++.+.|..++..  ....          
T Consensus       133 ---------------~~~l~iL~~~~-----~~~~~~i~H~fs--G~~~~~~~~l~~G~~~si~--g~i~----------  178 (258)
T PRK10425        133 ---------------ERFMALLEPWL-----DKLPGAVLHCFT--GTREEMQACLARGLYIGIT--GWVC----------  178 (258)
T ss_pred             ---------------HHHHHHHHHhc-----cCCCCeEEEecC--CCHHHHHHHHHCCCEEEEC--ceee----------
Confidence                           45555555421     011112468877  6677888887777655542  2100          


Q ss_pred             CCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHH
Q 013050          278 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLE  356 (450)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~  356 (450)
                            ..  +.......+.+.+.. -.+.+.||+ |+.....      |...+.|...-...+......+ .-.+++.+
T Consensus       179 ------~~--~~~~~~~~~~~~ipl-drlLlETDa-P~l~P~~------~~~~~~~~~n~P~~i~~v~~~iA~l~~~~~~  242 (258)
T PRK10425        179 ------DE--RRGLELRELLPLIPA-ERLLLETDA-PYLLPRD------LTPKPASRRNEPAFLPHILQRIAHWRGEDAA  242 (258)
T ss_pred             ------cc--cccHHHHHHHHhCCh-HHEEEeccC-CCCCCCC------cCCCCCCCCCCcHHHHHHHHHHHHHHCcCHH
Confidence                  00  000111111222211 135689994 4432211      0000001111223344444443 45689999


Q ss_pred             HHHHHHhhchhHHhCC
Q 013050          357 QLASWWSERPAKLAGQ  372 (450)
Q Consensus       357 ~al~~aT~~~A~~lg~  372 (450)
                      ++.+..+.|.-+++++
T Consensus       243 ~v~~~~~~N~~~lf~~  258 (258)
T PRK10425        243 WLAATTDANARTLFGL  258 (258)
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            9999999999888874

>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition

Probab=98.75  E-value=8.9e-07  Score=80.06  Aligned_cols=245  Identities=21%  Similarity=0.218  Sum_probs=127.0

Q ss_pred             eeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc---CCceEEEEeccccCC-Cc
Q 013050           44 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYVDVGFWGGLVPE-NA  119 (450)
Q Consensus        44 iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~  119 (450)
                      ||+|+|+....+  .++.....+.+...|++.++..+       ..........+....   .....++.|+..... ..
T Consensus         1 iD~H~Hl~~~~~--~~~~~~~~~~~~~~g~~~~i~~~-------~~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~~   71 (255)
T PF01026_consen    1 IDAHCHLDSPRF--EEDRPEVLERAREAGVSAIIIVS-------TDPEDWERVLELASQYPDRVYPALGIHPWEAHEVNE   71 (255)
T ss_dssp             EEEEE-TTSGGG--TTTHHHHHHHHHHTTEEEEEEEE-------SSHHHHHHHHHHHHHTTTEEEEEE---GGGGGGHSH
T ss_pred             CcCccCCCChhh--CcCHHHHHHHHHHcCCCEEEEcC-------CCHHHhHHHHHHHhcCCCeEEEEecCCcchhhhhhH
Confidence            799999987221  23456667888999999998764       112233333332222   234445555544333 23


Q ss_pred             cchHHHHHH--HH-cCCcEEEE-ecccC-CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcc
Q 013050          120 YNASALEAL--LN-AGVLGLKS-FMCPS-GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR  194 (450)
Q Consensus       120 ~~~~~~~~~--~~-~g~~~~~~-~~~~~-~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~  194 (450)
                      ...+.+.++  .. ..+.++.. ..++. ..........+.+.+.+++|+++++||.+|++...                
T Consensus        72 ~~~~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~----------------  135 (255)
T PF01026_consen   72 EDLEELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKAH----------------  135 (255)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHH----------------
T ss_pred             HHHHHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcH----------------
Confidence            334556666  33 33434422 12221 10111123446788899999999999999996532                


Q ss_pred             ccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccccc
Q 013050          195 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI  274 (450)
Q Consensus       195 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~  274 (450)
                                        ..++++.++....    +. --+.|+.+  .+.+.++++.+.|..++.  ++....      
T Consensus       136 ------------------~~~l~il~~~~~~----~~-~~i~H~f~--g~~~~~~~~~~~g~~~S~--~~~~~~------  182 (255)
T PF01026_consen  136 ------------------EELLEILKEYGPP----NL-RVIFHCFS--GSPEEAKKFLDLGCYFSF--SGAITF------  182 (255)
T ss_dssp             ------------------HHHHHHHHHTTGG----TS-EEEETT----S-HHHHHHHHHTTEEEEE--EGGGGS------
T ss_pred             ------------------HHHHHHHHhcccc----ce-eEEEecCC--CCHHHHHHHHhcCceEEe--cccccc------
Confidence                              4666676665110    12 44578877  677777777777654444  332110      


Q ss_pred             CCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcCC
Q 013050          275 PDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGV  353 (450)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gl  353 (450)
                                   +.......+.+.+. --.+.+.||. |.....+..          +.......+...+..+ .-.++
T Consensus       183 -------------~~~~~~~~~~~~ip-~drillETD~-P~~~~~~~~----------~~~~~p~~i~~~~~~la~~~~~  237 (255)
T PF01026_consen  183 -------------KNSKKVRELIKAIP-LDRILLETDA-PYLAPDPYR----------GKPNEPSNIPKVAQALAEIKGI  237 (255)
T ss_dssp             -------------TTSHHHHHHHHHS--GGGEEEE-BT-TSSECTTST----------TSE--GGGHHHHHHHHHHHHTS
T ss_pred             -------------cccHHHHHHHhcCC-hhhEEEcCCC-CcCCccccC----------CCCCChHHHHHHHHHHHHHcCC
Confidence                         01111222222221 1236799994 432211100          1122223345554444 44689


Q ss_pred             CHHHHHHHHhhchhHHhC
Q 013050          354 TLEQLASWWSERPAKLAG  371 (450)
Q Consensus       354 s~~~al~~aT~~~A~~lg  371 (450)
                      +++++.+..+.|..+++|
T Consensus       238 ~~e~~~~~~~~N~~r~f~  255 (255)
T PF01026_consen  238 SLEELAQIIYENAKRLFG  255 (255)
T ss_dssp             THHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhC
Confidence            999999999999999886

; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....

>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon

Probab=98.69  E-value=3.8e-06  Score=77.94  Aligned_cols=159  Identities=18%  Similarity=0.183  Sum_probs=92.1

Q ss_pred             CCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC
Q 013050          151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG  230 (450)
Q Consensus       151 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~  230 (450)
                      ...+.+++.+++|++.|+||.+|++....                               ....+++.+++.  +  ...
T Consensus       133 ~q~~~f~~~~~lA~~~~~Pv~iH~~~~~~-------------------------------~~~~~l~~l~~~--g--~~~  177 (293)
T cd00530         133 LEEKVLRAAARAQKETGVPISTHTQAGLT-------------------------------MGLEQLRILEEE--G--VDP  177 (293)
T ss_pred             HHHHHHHHHHHHHHHHCCeEEEcCCCCcc-------------------------------ccHHHHHHHHHc--C--CCh
Confidence            34467889999999999999999964200                               013344444432  0  012


Q ss_pred             ceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCC--eeEE
Q 013050          231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDML  308 (450)
Q Consensus       231 ~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~~~  308 (450)
                      .++.+.|+... .+.+.++++.+.|..+.........             ....++  .......+.++++.+.  .+++
T Consensus       178 ~~~vi~H~~~~-~~~~~~~~~~~~G~~i~~~~~~~~~-------------~~~~~~--~~~~~~~l~~~~~~~~~d~ill  241 (293)
T cd00530         178 SKVVIGHLDRN-DDPDYLLKIAALGAYLEFDGIGKDK-------------IFGYPS--DETRADAVKALIDEGYGDRLLL  241 (293)
T ss_pred             hheEEeCCCCC-CCHHHHHHHHhCCCEEEeCCCCccc-------------ccCCCC--HHHHHHHHHHHHHCCCcCCEEE
Confidence            23567888733 4567788887887654442211000             000000  1233445677777776  4589


Q ss_pred             cCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHh
Q 013050          309 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLA  370 (450)
Q Consensus       309 gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~l  370 (450)
                      +||.. .....+.         .++..+....+......+...|++.+++.++.|.||+++|
T Consensus       242 ~TD~p-~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~e~i~~~~~~N~~~lf  293 (293)
T cd00530         242 SHDVF-RKSYLEK---------RYGGHGYDYILTRFIPRLRERGVTEEQLDTILVENPARFL  293 (293)
T ss_pred             eCCcC-chhhhhh---------ccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHhC
Confidence            99953 3211110         0111233333444555667889999999999999999875

PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.

>PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria

Probab=98.50  E-value=3.9e-07  Score=69.72  Aligned_cols=140  Identities=24%  Similarity=0.328  Sum_probs=86.0

Q ss_pred             CCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc
Q 013050           36 EAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV  115 (450)
Q Consensus        36 g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (450)
                      |++++|||||.|+|+..+++.+.+.+.+           |+..+| ++.|...                .+.+..-+   
T Consensus         1 ~kli~~g~vd~hVhlrepg~~~keti~t-----------T~~amp-nt~paPa----------------~itv~~~~---   49 (142)
T PF12890_consen    1 GKLILPGLVDVHVHLREPGFEAKETIET-----------TWCAMP-NTFPAPA----------------GITVEDDG---   49 (142)
T ss_pred             Cceeehhhhhhhhhhhcccchhhhhhhc-----------eeeecC-ccCCCCc----------------ceeeeecC---
Confidence            6899999999999999988765433322           777787 5555331                01111000   


Q ss_pred             CCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050          116 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS  195 (450)
Q Consensus       116 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~  195 (450)
                                     ..+..+..       ++.-........+.++. .+.+..+..|+++...+..+....+    .+.
T Consensus        50 ---------------~e~~afsd-------dg~giq~~~lm~eamk~-a~l~~~i~ahceDd~l~~~g~v~~g----e~~  102 (142)
T PF12890_consen   50 ---------------EEAFAFSD-------DGYGIQIQLLMYEAMKK-AELDQEIVAHCEDDELTNGGVVHDG----ELP  102 (142)
T ss_pred             ---------------cceEEEec-------CCceeeeHHHHHHHHHH-HHcccHHHHhhcccccccccccccc----hhh
Confidence                           00111111       22223455566677777 8899999999987765443332221    111


Q ss_pred             cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh
Q 013050          196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA  241 (450)
Q Consensus       196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~  241 (450)
                      -... ..++-.||...+.+.+.+++..       +...|+.|+++.
T Consensus       103 q~~g-~~L~G~cEs~~~~rd~lLak~~-------g~~yhVchvstk  140 (142)
T PF12890_consen  103 QFLG-VYLKGNCESVQCARDVLLAKAT-------GCHYHVCHVSTK  140 (142)
T ss_pred             HHhC-CcCCCcchHHHHHHHHHhhhcc-------CCcEEEEEEecc
Confidence            1111 1134478889999999999976       999999999874

>PRK09875 putative hydrolase; Provisional

Probab=98.38  E-value=0.00021  Score=65.23  Aligned_cols=254  Identities=15%  Similarity=0.162  Sum_probs=139.4

Q ss_pred             cceeeccccCCCC--CCc-----ccc---hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEe
Q 013050           42 GLIDVHAHLDDPG--RTE-----WEG---FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW  111 (450)
Q Consensus        42 G~iD~H~H~~~~~--~~~-----~~~---~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (450)
                      |+..+|=|+....  ...     .++   .....+.+.+.|..|+++..  ....-.....+....+.    ..+++...
T Consensus         7 G~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T--~~g~GRd~~~l~~is~~----tgv~Iv~~   80 (292)
T PRK09875          7 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMT--NRYMGRNAQFMLDVMRE----TGINVVAC   80 (292)
T ss_pred             CcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecC--CCccCcCHHHHHHHHHH----hCCcEEEc
Confidence            8889999984321  111     122   23345577889999999984  22223444444444333    34555443


Q ss_pred             ccccCCC--c-----cchHHHH----HHHHcCCc------EEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEec
Q 013050          112 GGLVPEN--A-----YNASALE----ALLNAGVL------GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA  174 (450)
Q Consensus       112 ~~~~~~~--~-----~~~~~~~----~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~  174 (450)
                      .++....  +     ...+++.    +.+..|+.      ++-.-++.+. ........+.++.+.+.+.+.|.+|.+|.
T Consensus        81 TG~y~~~~~p~~~~~~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~-~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht  159 (292)
T PRK09875         81 TGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSE-GKITPLEEKVFIAAALAHNQTGRPISTHT  159 (292)
T ss_pred             CcCCCCccCCHHHhcCCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCC-CCCCHHHHHHHHHHHHHHHHHCCcEEEcC
Confidence            3322211  1     1122222    22223322      2210111110 00112234556666777778899999997


Q ss_pred             CChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCc---eEEEEecCChhHHHHHHHHH
Q 013050          175 EMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA---HLHIVHLSDASSSLDLLMEA  251 (450)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~h~~~~~~~~~~~~~~  251 (450)
                      ....                               ... +.++++++.       |.   ++.+.|+... .+.+.++++
T Consensus       160 ~~~~-------------------------------~g~-e~l~il~e~-------Gvd~~rvvi~H~d~~-~d~~~~~~l  199 (292)
T PRK09875        160 SFST-------------------------------MGL-EQLALLQAH-------GVDLSRVTVGHCDLK-DNLDNILKM  199 (292)
T ss_pred             CCcc-------------------------------chH-HHHHHHHHc-------CcCcceEEEeCCCCC-CCHHHHHHH
Confidence            3211                               112 235555544       44   6888999766 788888888


Q ss_pred             HhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcC--CeeEEcCCCCCCChhhhcccCCCccc
Q 013050          252 KTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLK  329 (450)
Q Consensus       252 ~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g--~~~~~gtD~~~~~~~~~~~~~~~~~~  329 (450)
                      .+.|..+..+..-.              . ...|   .....+.+....+.|  -.+.+++|........          
T Consensus       200 ~~~G~~l~fD~~g~--------------~-~~~p---d~~r~~~i~~L~~~Gy~drilLS~D~~~~~~~~----------  251 (292)
T PRK09875        200 IDLGAYVQFDTIGK--------------N-SYYP---DEKRIAMLHALRDRGLLNRVMLSMDITRRSHLK----------  251 (292)
T ss_pred             HHcCCEEEeccCCC--------------c-ccCC---HHHHHHHHHHHHhcCCCCeEEEeCCCCCccccc----------
Confidence            88886555431110              0 0011   122345556666666  3477899974332111          


Q ss_pred             cCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhC
Q 013050          330 AWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG  371 (450)
Q Consensus       330 ~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg  371 (450)
                      .. |-.+....+...+..+++.|+|.+++=+|...||+++|+
T Consensus       252 ~~-gg~G~~~i~~~~ip~L~~~Gvse~~I~~m~~~NP~r~~~  292 (292)
T PRK09875        252 AN-GGYGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQFFQ  292 (292)
T ss_pred             cc-CCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHHhC
Confidence            11 325666667777777889999999999999999999874

>TIGR01430 aden_deam adenosine deaminase

Probab=98.21  E-value=0.00026  Score=66.54  Aligned_cols=143  Identities=20%  Similarity=0.192  Sum_probs=84.2

Q ss_pred             CCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC
Q 013050          151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG  230 (450)
Q Consensus       151 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~  230 (450)
                      .+.+.+.++++.|+++|+++.+|+.+...                             ...+...++   +.       +
T Consensus       169 ~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~-----------------------------~~~~~~~~~---~~-------g  209 (324)
T TIGR01430       169 GPPPDFVRAFAIARELGLHLTVHAGELGG-----------------------------PESVREALD---DL-------G  209 (324)
T ss_pred             CCHHHHHHHHHHHHHCCCCeEEecCCCCC-----------------------------hHHHHHHHH---Hc-------C
Confidence            45788999999999999999999954311                             000111111   11       1


Q ss_pred             ceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcC
Q 013050          231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS  310 (450)
Q Consensus       231 ~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gt  310 (450)
                      . -.+.|+....+..+.++.+++.|+.+.+  ||.......           ..+    .....++.++++.|+.+++||
T Consensus       210 ~-~ri~Hg~~l~~~~~~i~~l~~~gi~v~~--cP~Sn~~l~-----------~~~----~~~~~pi~~l~~~Gv~v~igT  271 (324)
T TIGR01430       210 A-TRIGHGVRALEDPELLKRLAQENITLEV--CPTSNVALG-----------VVK----SLAEHPLRRFLEAGVKVTLNS  271 (324)
T ss_pred             c-hhcchhhhhccCHHHHHHHHHcCceEEE--CCccccccc-----------ccC----CcccChHHHHHHCCCEEEECC
Confidence            1 1234444321334567777777765554  765432211           000    011234667789999999999


Q ss_pred             CCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          311 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       311 D~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      |.......                     .+...+.. ....|+++++ +.++|.|+++.+-.
T Consensus       272 D~~~~~~~---------------------~l~~e~~~a~~~~~l~~~e-l~~~~~na~~~~f~  312 (324)
T TIGR01430       272 DDPAYFGS---------------------YLTEEYEIAAKHAGLTEEE-LKQLARNALEGSFL  312 (324)
T ss_pred             CCCcccCC---------------------CHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCC
Confidence            96432110                     12223333 3457999999 88999999998765

This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.

>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively

Probab=98.21  E-value=0.00023  Score=67.03  Aligned_cols=143  Identities=14%  Similarity=0.144  Sum_probs=82.8

Q ss_pred             CCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC
Q 013050          151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG  230 (450)
Q Consensus       151 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~  230 (450)
                      .+.+.+..+++.|+++|+++.+|+.+...                             ...+..+++.+.      +  .
T Consensus       170 ~~~~~~~~~~~~A~~~g~~v~~H~~E~~~-----------------------------~~~~~~a~~~~g------~--~  212 (325)
T cd01320         170 FPPEKFVRAFQRAREAGLRLTAHAGEAGG-----------------------------PESVRDALDLLG------A--E  212 (325)
T ss_pred             CCHHHHHHHHHHHHHCCCceEEeCCCCCC-----------------------------HHHHHHHHHHcC------C--c
Confidence            36789999999999999999999943211                             011222222111      1  2


Q ss_pred             ceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcC
Q 013050          231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS  310 (450)
Q Consensus       231 ~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gt  310 (450)
                      .-.|+.++.   ...+.++.+++.|+.+..  ||.......           ..+    .....++..+++.|+.+++||
T Consensus       213 ~i~H~~~l~---~~~~~~~~l~~~gi~v~~--~P~sn~~l~-----------~~~----~~~~~p~~~l~~~Gv~v~lgT  272 (325)
T cd01320         213 RIGHGIRAI---EDPELVKRLAERNIPLEV--CPTSNVQTG-----------AVK----SLAEHPLRELLDAGVKVTINT  272 (325)
T ss_pred             ccchhhccC---ccHHHHHHHHHcCCeEEE--CCCcccccc-----------ccC----CcccChHHHHHHCCCEEEECC
Confidence            223444443   233567777777766554  664321110           000    011234667789999999999


Q ss_pred             CCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          311 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       311 D~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      |..+... .                    .+...+.. ....++++++ +..+|.|++++.-+
T Consensus       273 D~~~~~~-~--------------------~~~~e~~~~~~~~~l~~~e-l~~~~~na~~~~f~  313 (325)
T cd01320         273 DDPTVFG-T--------------------YLTDEYELLAEAFGLTEEE-LKKLARNAVEASFL  313 (325)
T ss_pred             CCCcccC-C--------------------CHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCC
Confidence            9643211 0                    12222233 3456999999 55688999988765

ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.

>PRK09358 adenosine deaminase; Provisional

Probab=98.04  E-value=0.0011  Score=62.88  Aligned_cols=143  Identities=17%  Similarity=0.142  Sum_probs=81.3

Q ss_pred             CCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC
Q 013050          151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG  230 (450)
Q Consensus       151 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~  230 (450)
                      .+.+.+.++++.|+++|+++.+|+.+...                             ...+..+++...      +  .
T Consensus       179 ~~~~~~~~~~~~A~~~g~~~~~H~~E~~~-----------------------------~~~~~~al~~lg------~--~  221 (340)
T PRK09358        179 FPPSKFARAFDRARDAGLRLTAHAGEAGG-----------------------------PESIWEALDELG------A--E  221 (340)
T ss_pred             CCHHHHHHHHHHHHHCCCCeEEcCCCCCc-----------------------------hhHHHHHHHHcC------C--c
Confidence            46788999999999999999999954211                             011222232111      1  2


Q ss_pred             ceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcC
Q 013050          231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS  310 (450)
Q Consensus       231 ~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gt  310 (450)
                      .-.|..++.   +..+.++.+++.|+.+.+  ||......           ...+.+    ...++.++++.|+.+++||
T Consensus       222 ri~Hg~~l~---~~~~~~~~l~~~gi~v~~--cP~Sn~~l-----------~~~~~~----~~~pi~~l~~~Gv~v~lgT  281 (340)
T PRK09358        222 RIGHGVRAI---EDPALMARLADRRIPLEV--CPTSNVQT-----------GAVPSL----AEHPLKTLLDAGVRVTINT  281 (340)
T ss_pred             ccchhhhhc---cCHHHHHHHHHcCCeEEE--CCCccccc-----------cccCCc----ccChHHHHHHCCCEEEECC
Confidence            223333433   234566777777765554  77532211           010000    1234667789999999999


Q ss_pred             CCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          311 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       311 D~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      |..+....                     .+...+.. ....|++++++ ...+.|+.+..-+
T Consensus       282 D~~~~~~~---------------------~l~~e~~~~~~~~~l~~~el-~~l~~nai~~sf~  322 (340)
T PRK09358        282 DDPLVFGT---------------------TLTEEYEALAEAFGLSDEDL-AQLARNALEAAFL  322 (340)
T ss_pred             CCCcccCC---------------------CHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHCC
Confidence            96433210                     12223333 34469999995 5567887776544

>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]

Probab=97.97  E-value=0.0023  Score=54.21  Aligned_cols=239  Identities=18%  Similarity=0.222  Sum_probs=123.7

Q ss_pred             ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHh-----------cCCceEEEEe
Q 013050           43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE-----------KRIYVDVGFW  111 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~  111 (450)
                      +||+|+|+...++       .-...+..+|+-+++...+...+. ...+.+....++..           .+..+.++.+
T Consensus         2 ~iD~HiH~d~r~~-------eDlekMa~sGI~~Vit~AhdP~~~-~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvH   73 (254)
T COG1099           2 YIDSHIHLDVRGF-------EDLEKMALSGIREVITLAHDPYPM-KTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVH   73 (254)
T ss_pred             ccccccccccccH-------HHHHHHHHhChhhhhhcccCCCCc-ccHHHHHHHHHHHHccchhhHHhhCceeeEEeccC
Confidence            7999999986653       234566778888887764333332 22333332222221           1223344444


Q ss_pred             ccccCCC-ccchHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccC
Q 013050          112 GGLVPEN-AYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD  189 (450)
Q Consensus       112 ~~~~~~~-~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~  189 (450)
                      +...+.+ ...++.+.++.. .++.++... +.   +..+....+-+++-+++|+++++|+.+|....+           
T Consensus        74 Pr~iP~e~~~~l~~L~~~l~~e~VvAiGEi-GL---e~~t~~E~evf~~QL~LA~e~dvPviVHTPr~n-----------  138 (254)
T COG1099          74 PRAIPPELEEVLEELEELLSNEDVVAIGEI-GL---EEATDEEKEVFREQLELARELDVPVIVHTPRRN-----------  138 (254)
T ss_pred             CCCCCchHHHHHHHHHhhcccCCeeEeeec-cc---ccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCc-----------
Confidence            4333322 122344444433 344444331 11   111223456688899999999999999994322           


Q ss_pred             cCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcc
Q 013050          190 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF  269 (450)
Q Consensus       190 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~  269 (450)
                                        -.+.+.++++.+....    .....+.+.|++.  ++   +++.-..+..+-..++|.-+  
T Consensus       139 ------------------K~e~t~~ildi~~~~~----l~~~lvvIDH~N~--et---v~~vld~e~~vGlTvqPgKl--  189 (254)
T COG1099         139 ------------------KKEATSKILDILIESG----LKPSLVVIDHVNE--ET---VDEVLDEEFYVGLTVQPGKL--  189 (254)
T ss_pred             ------------------chhHHHHHHHHHHHcC----CChhheehhcccH--HH---HHHHHhccceEEEEecCCcC--
Confidence                              1345677777777540    1123366788776  33   44333334333333344211  


Q ss_pred             cccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH
Q 013050          270 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR  349 (450)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  349 (450)
                                         .......+.+... .-.+.+.||.. +.....                  ..++...-...
T Consensus       190 -------------------t~~eAveIV~ey~-~~r~ilnSD~~-s~~sd~------------------lavprtal~m~  230 (254)
T COG1099         190 -------------------TVEEAVEIVREYG-AERIILNSDAG-SAASDP------------------LAVPRTALEME  230 (254)
T ss_pred             -------------------CHHHHHHHHHHhC-cceEEEecccc-cccccc------------------hhhhHHHHHHH
Confidence                               1122111211111 24567888843 211111                  12344434456


Q ss_pred             hcCCCHHHHHHHHhhchhHHhCC
Q 013050          350 KYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       350 ~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      ..|+..+++-+.+-.|+-+++|+
T Consensus       231 ~~gv~~~~i~kV~~~NA~~~~~l  253 (254)
T COG1099         231 ERGVGEEEIEKVVRENALSFYGL  253 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHHHhCc
Confidence            67899999999999998888775

>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3

Probab=97.82  E-value=2e-05  Score=50.22  Aligned_cols=31  Identities=16%  Similarity=0.211  Sum_probs=21.7

Q ss_pred             eEEEEEEECCeEEEecCcccCCCCCcccccC
Q 013050          420 GKVLATISRGNLVYKEGNHAPAACGSPILAT  450 (450)
Q Consensus       420 ~~v~~v~v~G~~v~~~g~~~~~~~g~~~~~~  450 (450)
                      .-|.+|||||++++++|++++...|++|++.
T Consensus        18 ~GI~~V~VNG~~vv~~g~~t~~~~G~~lrr~   48 (48)
T PF07908_consen   18 EGIDYVFVNGQIVVEDGEVTGARPGRVLRRP   48 (48)
T ss_dssp             BSEEEEEETTEEEECTTEESSS----B----
T ss_pred             CCEEEEEECCEEEEECCeECCCCCCeEecCC
Confidence            4689999999999999999999999999873

5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.

>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM)

Probab=97.70  E-value=0.038  Score=50.24  Aligned_cols=121  Identities=18%  Similarity=0.167  Sum_probs=70.6

Q ss_pred             cceeeccccCCCCCCc----------ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEe
Q 013050           42 GLIDVHAHLDDPGRTE----------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW  111 (450)
Q Consensus        42 G~iD~H~H~~~~~~~~----------~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (450)
                      |.||+|.|+..+...+          .-........+-..||+..+-+.....+ .... .+....+  .......+.. 
T Consensus         1 ~~iD~H~H~~~~~~~~~~~~~~~~~~~~~~e~l~~~m~~~gV~~aV~vq~~~~~-~~n~-~~~~~~~--~~~r~~g~~~-   75 (263)
T cd01311           1 GAVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQASIYG-ADNS-NLLDALA--SNGKARGGAT-   75 (263)
T ss_pred             CCEEeeeeeeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCcEEEeCccccC-CchH-HHHHHHh--hCCCeEEEEE-
Confidence            6799999997543211          1224445667778999988876411111 1111 1111111  1111112111 


Q ss_pred             ccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 013050          112 GGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE  175 (450)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~  175 (450)
                        +.+.. ...+.++++.+.|+.|++......+     ..+.+.+.+.++.+.++|+++.+|+.
T Consensus        76 --~~p~~-~~~~~l~~~~~~g~rGvRl~~~~~~-----~~~~~~~~~~~~~~~~~gl~v~~~~~  131 (263)
T cd01311          76 --VDPRT-TTDAELKEMHDAGVRGVRFNFLFGG-----VDNKDELDEIAKRAAELGWHVQVYFD  131 (263)
T ss_pred             --ECCCC-CCHHHHHHHHHCCCeEEEEecccCC-----CCCHHHHHHHHHHHHHcCCEEEEEeC
Confidence              21222 2357788888899999998643221     12667788999999999999999984

This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.

>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3

Probab=97.66  E-value=0.001  Score=61.21  Aligned_cols=262  Identities=17%  Similarity=0.133  Sum_probs=126.1

Q ss_pred             cceeeccccCCCCC-------Cccc----c---hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceE
Q 013050           42 GLIDVHAHLDDPGR-------TEWE----G---FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD  107 (450)
Q Consensus        42 G~iD~H~H~~~~~~-------~~~~----~---~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (450)
                      |++.+|=|+.....       ..++    +   .....+.+.+.|..++++.. . ...-.....+....+.    ..++
T Consensus         7 G~tl~HEHl~~d~~~~~~~~~~~~~~~~~~~~~~~~El~~~k~~Gg~tiVd~T-~-~g~GRd~~~l~~is~~----tGv~   80 (308)
T PF02126_consen    7 GFTLMHEHLLIDLSGFYKDPDEALDDRDEDVEAAVAELKEFKAAGGRTIVDAT-P-IGLGRDVEALREISRR----TGVN   80 (308)
T ss_dssp             SSEEEEEESEEETTTHHHHTGGGGCGHHHHHHHHHHHHHHHHHTTEEEEEE---S-GGGTB-HHHHHHHHHH----HT-E
T ss_pred             CCeecccCeeecChhhccCCCcchhhhhhhHHHHHHHHHHHHHcCCCEEEecC-C-cccCcCHHHHHHHHHH----hCCe
Confidence            78889999843211       1122    2   22235577889999999984 1 1223444444444433    2344


Q ss_pred             EEEeccccC--CCc-----cchHHHHHH----HHcCCc-------EEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCc
Q 013050          108 VGFWGGLVP--ENA-----YNASALEAL----LNAGVL-------GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP  169 (450)
Q Consensus       108 ~~~~~~~~~--~~~-----~~~~~~~~~----~~~g~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~  169 (450)
                      +....++..  ..+     ...+++.++    +..|+.       -++...+..   .........++.+....++-|.+
T Consensus        81 II~~TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~~---~it~~E~k~lrAaa~A~~~TG~p  157 (308)
T PF02126_consen   81 IIASTGFYKEPFYPEWVREASVEELADLFIREIEEGIDGTGIKAGIIKEIGSSN---PITPLEEKVLRAAARAHKETGAP  157 (308)
T ss_dssp             EEEEEEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBTT---BCEHHHHHHHHHHHHHHHHHT-E
T ss_pred             EEEeCCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCccchhheeEeeccC---CCCHHHHHHHHHHHHHHHHhCCe
Confidence            433322221  111     112222222    334433       122222111   11112234455555566678999


Q ss_pred             EEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHH
Q 013050          170 LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLM  249 (450)
Q Consensus       170 v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  249 (450)
                      |.+|......              .                 -.+.++++++...    .--++.+.|+... .+.+.++
T Consensus       158 I~~H~~~g~~--------------~-----------------~~e~~~il~e~Gv----~~~rvvigH~D~~-~D~~y~~  201 (308)
T PF02126_consen  158 ISTHTGRGTR--------------M-----------------GLEQLDILEEEGV----DPSRVVIGHMDRN-PDLDYHR  201 (308)
T ss_dssp             EEEEESTTGT--------------C-----------------HHHHHHHHHHTT------GGGEEETSGGGS-T-HHHHH
T ss_pred             EEEcCCCCCc--------------C-----------------HHHHHHHHHHcCC----ChhHeEEeCCCCC-CCHHHHH
Confidence            9999943220              0                 1233444444300    0235778898865 7888899


Q ss_pred             HHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCC---hhhHHHHHHHHhcCCe--eEEcCCCCCCChhhhcccC
Q 013050          250 EAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD---AANKEKLWEALMDGHI--DMLSSDHSPTVPELKLLDE  324 (450)
Q Consensus       250 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~g~~--~~~gtD~~~~~~~~~~~~~  324 (450)
                      ++.+.|+.+..+.......         +  ...+|.+..   ....+.+..+++.|..  +.++.|.......      
T Consensus       202 ~la~~G~~l~~D~~g~~~~---------g--~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~~------  264 (308)
T PF02126_consen  202 ELADRGVYLEFDTIGREFS---------G--KDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKSRL------  264 (308)
T ss_dssp             HHHHTT-EEEETTTT-B-T---------T--TTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEEGS------
T ss_pred             HHHhcCCEEEecCCccccc---------C--cccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEeccccccccc------
Confidence            9888887666544321100         0  000011111   2334556777777764  6888885431110      


Q ss_pred             CCccccCCCCcchh--hHHHHHHHHHHhcCCCHHHHHHHHhhchhHHh
Q 013050          325 GNFLKAWGGISSLQ--FVLPVTWSYGRKYGVTLEQLASWWSERPAKLA  370 (450)
Q Consensus       325 ~~~~~~~~g~~~~~--~~~~~~~~~~~~~gls~~~al~~aT~~~A~~l  370 (450)
                           .+.|..+..  ..+...+-.+++.|+|.+++=++...||+++|
T Consensus       265 -----~~~gg~g~~~~~i~~~fiP~L~~~Gv~~~~i~~ilv~NP~r~l  307 (308)
T PF02126_consen  265 -----YRYGGGGYGYIYILTRFIPRLKERGVSEEDIDKILVENPARIL  307 (308)
T ss_dssp             -----SSCCHHHHTTTHHHHTHHHHHHHTTS-HHHHHHHHTHHHHHHH
T ss_pred             -----cccCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHHc
Confidence                 011212221  22234445567889999999999999999987

1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....

>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []

Probab=97.51  E-value=0.0028  Score=57.96  Aligned_cols=187  Identities=15%  Similarity=0.119  Sum_probs=96.9

Q ss_pred             CccchHHHHHHH-HcCCcEEEEecccCCCCCCCCCCHHHH-HHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050          118 NAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHI-KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS  195 (450)
Q Consensus       118 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~  195 (450)
                      ..+..+++.+.+ +.|+.|++.+....+.    ......+ ..+++.|+++|++|.+|+.....                
T Consensus        83 ~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~----------------  142 (273)
T PF04909_consen   83 PEDAVEELERALQELGFRGVKLHPDLGGF----DPDDPRLDDPIFEAAEELGLPVLIHTGMTGF----------------  142 (273)
T ss_dssp             HHHHHHHHHHHHHTTTESEEEEESSETTC----CTTSGHCHHHHHHHHHHHT-EEEEEESHTHH----------------
T ss_pred             chhHHHHHHHhccccceeeeEecCCCCcc----ccccHHHHHHHHHHHHhhccceeeeccccch----------------
Confidence            345566777776 7899999987644321    2333344 48999999999999999640000                


Q ss_pred             cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050          196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP  275 (450)
Q Consensus       196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~  275 (450)
                             ............+..++.+      +++.++.+.|+.......+....+.+....++++++.....       
T Consensus       143 -------~~~~~~~~~~~~~~~~~~~------~P~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~-------  202 (273)
T PF04909_consen  143 -------PDAPSDPADPEELEELLER------FPDLRIILAHLGGPFPWWEEALRLLDRFPNVYVDLSGIPPF-------  202 (273)
T ss_dssp             -------HHHHHHHHHHHHHTTHHHH------STTSEEEESGGGTTHHHHHHHHHHHHHHTTEEEECHSHHSS-------
T ss_pred             -------hhhhHHHHHHHHHHHHHHH------hcCCeEEEecCcccchhHHHHHHHHHhCCcccccccccccc-------
Confidence                   0000112234455555555      56899999999864112222222222223466655432110       


Q ss_pred             CCCCceEEcCCCCChhhHHHHHHHHhc-C-CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCC
Q 013050          276 DGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV  353 (450)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gl  353 (450)
                           ....+   .......+.+++.. | -.++.|||. |......                   .............+
T Consensus       203 -----~~~~~---~~~~~~~l~~~~~~~g~drilfGSD~-P~~~~~~-------------------~~~~~~~~~~~~~l  254 (273)
T PF04909_consen  203 -----WYFWP---PSFDRPFLRRAVDEFGPDRILFGSDY-PHPDGAS-------------------PYEYIWEAYFLDDL  254 (273)
T ss_dssp             -----EEEET---THHCHHHHHHHHHHHTGGGEEEE--T-TSSTHHH-------------------HHHHHHHHHHHHHS
T ss_pred             -----cccCc---ccccHHHHHHHHHHhCCceEEecCCC-CCCCccc-------------------cHHHHHHhhhccCC
Confidence                 00111   12223333333332 2 247899995 4322211                   01111111111117


Q ss_pred             CHHHHHHHHhhchhHHhCC
Q 013050          354 TLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       354 s~~~al~~aT~~~A~~lg~  372 (450)
                      |.++.=+....|+++++++
T Consensus       255 ~~~~~~~i~~~NA~rl~~l  273 (273)
T PF04909_consen  255 SEEEREKILYDNARRLYGL  273 (273)
T ss_dssp             SHHHHHHHHTHHHHHHHTC
T ss_pred             CHHHHHHHHhHhHHHHcCc
Confidence            9999999999999999985

The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....

>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]

Probab=97.11  E-value=0.1  Score=45.77  Aligned_cols=137  Identities=18%  Similarity=0.191  Sum_probs=81.5

Q ss_pred             CHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCc
Q 013050          152 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA  231 (450)
Q Consensus       152 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~  231 (450)
                      ..+.+..++++|+..+.+|++|.++.+                              .+.+.++.++++..       |.
T Consensus       143 ~n~vl~~a~elA~dvdc~vqLHtes~~------------------------------~~~~~~i~~~ak~~-------G~  185 (285)
T COG1831         143 SNEVLEYAMELAKDVDCAVQLHTESLD------------------------------EETYEEIAEMAKEA-------GI  185 (285)
T ss_pred             HHHHHHHHHHHhhcCCCcEEEecCCCC------------------------------hHHHHHHHHHHHHh-------CC
Confidence            456678888888889999999986543                              23356666666665       42


Q ss_pred             ---eEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEE
Q 013050          232 ---HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML  308 (450)
Q Consensus       232 ---~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  308 (450)
                         ++..+|...      .+......|+..+                           +  ...+....++++.|..+++
T Consensus       186 ~~~~VVkHha~p------~v~~~~~~Gi~pS---------------------------V--~asr~~v~~a~~~g~~Fmm  230 (285)
T COG1831         186 KPYRVVKHHAPP------LVLKCEEVGIFPS---------------------------V--PASRKNVEDAAELGPRFMM  230 (285)
T ss_pred             CcceeEeecCCc------cchhhhhcCcCCc---------------------------c--cccHHHHHHHHhcCCceEe
Confidence               343344433      2333322332111                           1  1223356778899999999


Q ss_pred             cCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          309 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       309 gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      -||.- -++.           .++..-+.-..-......+....++.+.+.+.--.||.+++|+
T Consensus       231 ETDyI-DDp~-----------RpgavL~PktVPrr~~~i~~~g~~~ee~vy~i~~E~pe~VYg~  282 (285)
T COG1831         231 ETDYI-DDPR-----------RPGAVLGPKTVPRRTREILEKGDLTEEDVYRIHVENPERVYGI  282 (285)
T ss_pred             ecccc-cCcc-----------cCCCcCCccchhHHHHHHHHhcCCcHHHHHHHHHhCHHHHhCc
Confidence            99963 1111           1112222222222344445566688999999999999999987

>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]

Probab=97.04  E-value=0.23  Score=44.78  Aligned_cols=118  Identities=16%  Similarity=0.150  Sum_probs=63.0

Q ss_pred             ceEEEEecC-ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCe--eE
Q 013050          231 AHLHIVHLS-DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI--DM  307 (450)
Q Consensus       231 ~~~~~~h~~-~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~--~~  307 (450)
                      .++.+.|+. +. +.....+.++.+|.-+..+..-...               ..|   .......+.+..++|..  +.
T Consensus       193 ~~v~igH~d~n~-dd~~y~~~l~~~Ga~l~fD~iG~d~---------------y~p---d~~r~~~~~~l~~~gy~d~i~  253 (316)
T COG1735         193 RKVSIGHMDPNT-DDVYYQKKLADRGAFLEFDRIGKDK---------------YYP---DEDRIAPLLELVARGYADLIL  253 (316)
T ss_pred             hHeeEeccCCCC-ChHHHHHHHHhcCceEEecccCccc---------------cCc---HHHhhhhHHHHHHhhHhhhee
Confidence            358889998 44 8888999998888655544321111               111   11222333444444432  23


Q ss_pred             Ec-CCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          308 LS-SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       308 ~g-tD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      ++ .|.+-.......     ......+-.+....+...+-.+++.|++-+.+=.|.--||+++|..
T Consensus       254 ls~d~~~~~~~~~~~-----~~~~~~~~~g~~~I~~~fIP~Lk~~Gvde~~i~~mlvdNP~r~f~~  314 (316)
T COG1735         254 LSHDDICLSDDVFLK-----SMLKANGGWGYGYILNDFIPRLKRHGVDEETIDTMLVDNPARLFTA  314 (316)
T ss_pred             cccchhhhhhhHHHH-----hhhhhcCCcccchhhHhhHHHHHHcCCCHHHHHHHHhhCHHHHhcc
Confidence            44 222211111000     0001113334444455566677889999777778888899999875

>cd00443 ADA_AMPD Adenosine/AMP deaminase

Probab=96.69  E-value=0.22  Score=46.36  Aligned_cols=137  Identities=17%  Similarity=0.156  Sum_probs=79.7

Q ss_pred             CHHHHHHHHHHHHhcC-CcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC
Q 013050          152 NASHIKEGLSVLARYK-RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG  230 (450)
Q Consensus       152 ~~~~l~~~~~~a~~~g-~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~  230 (450)
                      +...+...+..|++.| +++.+|+.+...                             ...+..++....         .
T Consensus       151 ~~~~f~~~~~~ar~~g~l~~t~HaGE~~~-----------------------------~~~v~~~~~~~~---------~  192 (305)
T cd00443         151 PLRDFYSYYEYARRLGLLGLTLHCGETGN-----------------------------REELLQALLLLP---------D  192 (305)
T ss_pred             CHHHHHHHHHHHHHcCCcceEEeecCCCC-----------------------------hHHHHHHHHhcc---------c
Confidence            5778889999999999 999999954321                             112333443321         3


Q ss_pred             ceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcC
Q 013050          231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS  310 (450)
Q Consensus       231 ~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gt  310 (450)
                      .--|..++.   +..+.++.+++.++++.+  ||.......           ..+.    ....++...++.|+.++++|
T Consensus       193 RIgHg~~~~---~~p~~~~~l~~~~i~ie~--CP~SN~~~~-----------~~~~----~~~hP~~~~~~~G~~v~i~T  252 (305)
T cd00443         193 RIGHGIFLL---KHPELIYLVKLRNIPIEV--CPTSNVVLG-----------TVQS----YEKHPFMRFFKAGLPVSLST  252 (305)
T ss_pred             eeeceEecC---CCHHHHHHHHHcCCEEEE--Ccchhhhhc-----------CCCC----hhhChHHHHHHCCCeEEEeC
Confidence            334444444   444567777777765554  776433221           1111    11233667788999999999


Q ss_pred             CCCCCChhhhcccCCCccccCCCCcchhhHHHHHHH-HHHhcCCCHHHHHHHHhhchhH
Q 013050          311 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAK  368 (450)
Q Consensus       311 D~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~gls~~~al~~aT~~~A~  368 (450)
                      |.......                     .+...+. .....+++.+++.+++ .|+-+
T Consensus       253 Dd~~~~~~---------------------~l~~E~~~~~~~~~l~~~~l~~l~-~nsi~  289 (305)
T cd00443         253 DDPGIFGT---------------------SLSEEYSLAAKTFGLTFEDLCELN-RNSVL  289 (305)
T ss_pred             CCCcccCC---------------------ChHHHHHHHHHHcCcCHHHHHHHH-HHHHH
Confidence            96533211                     1222222 2456689999877665 44433

Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.

>PTZ00124 adenosine deaminase; Provisional

Probab=96.48  E-value=0.26  Score=46.73  Aligned_cols=136  Identities=15%  Similarity=0.096  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceE
Q 013050          154 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL  233 (450)
Q Consensus       154 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  233 (450)
                      ..+..+++.|++.|+++.+|+.+...                        |.  +...+..++.....        ..--
T Consensus       206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~------------------------~~--~~~~v~~ai~~l~~--------~RIG  251 (362)
T PTZ00124        206 KPFKDIFDYVREAGVNLTVHAGEDVT------------------------LP--NLNTLYSAIQVLKV--------KRIG  251 (362)
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCCCC------------------------CC--cchhHHHHHHHhCC--------Cccc
Confidence            55788999999999999999954210                        00  00112222222221        2223


Q ss_pred             EEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCC
Q 013050          234 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS  313 (450)
Q Consensus       234 ~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~  313 (450)
                      |..++.   ...+.++.+++.++++.+  ||......           ...+.    ....++...++.|++++++||..
T Consensus       252 HG~~~~---~d~~l~~~l~~~~I~lEv--CPtSN~~~-----------~~v~~----~~~HPi~~l~~~Gv~v~InTDDp  311 (362)
T PTZ00124        252 HGIRVA---ESQELIDMVKEKDILLEV--CPISNVLL-----------NNAKS----MDTHPIRKLYDAGVKVSVNSDDP  311 (362)
T ss_pred             cccccC---CCHHHHHHHHHcCCeEEE--CCcchhhh-----------hcCCc----hhhHHHHHHHHCCCcEEEeCCCc
Confidence            333433   345667777777765544  88654322           11111    22355778899999999999965


Q ss_pred             CCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhh
Q 013050          314 PTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSE  364 (450)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~  364 (450)
                      ....                     ..+...+.. ....|+|.+++.+++..
T Consensus       312 ~~~~---------------------t~l~~Ey~~~~~~~gls~~~l~~l~~n  342 (362)
T PTZ00124        312 GMFL---------------------TNINDDYEELYTHLNFTLADFMKMNEW  342 (362)
T ss_pred             cccC---------------------CChhHHHHHHHHHcCCCHHHHHHHHHH
Confidence            3311                     112333333 35679999999887443

>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase

Probab=96.42  E-value=0.18  Score=47.60  Aligned_cols=110  Identities=18%  Similarity=0.129  Sum_probs=63.7

Q ss_pred             CHHHHHHHHHHHHhcC--CcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCC
Q 013050          152 NASHIKEGLSVLARYK--RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE  229 (450)
Q Consensus       152 ~~~~l~~~~~~a~~~g--~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  229 (450)
                      +...+..+++.|++.|  +++.+|+.+...           .+         ..+    .+.+..++.+..         
T Consensus       177 ~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~-----------~~---------~~~----~~~v~~al~lg~---------  223 (345)
T cd01321         177 PLLDFLPQLLWFPKQCAEIPFFFHAGETNG-----------DG---------TET----DENLVDALLLNT---------  223 (345)
T ss_pred             CHHHHHHHHHHHHHhCCCCceEeecCCCcC-----------CC---------CCC----hhHHHHHHHhCC---------
Confidence            5678889999999999  999999954320           00         000    112444443322         


Q ss_pred             CceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEc
Q 013050          230 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS  309 (450)
Q Consensus       230 ~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~g  309 (450)
                      ..-=|..++.   +..+.++.+++.++++  ++||.......           ..+.    ....++...++.|++++++
T Consensus       224 ~RIGHG~~~~---~dp~ll~~l~~~~I~l--EvCPtSN~~~~-----------~v~~----~~~HPl~~ll~~Gv~vtin  283 (345)
T cd01321         224 KRIGHGFALP---KHPLLMDLVKKKNIAI--EVCPISNQVLG-----------LVSD----LRNHPAAALLARGVPVVIS  283 (345)
T ss_pred             CcCccccccC---cCHHHHHHHHHcCCeE--EECcchhhhhc-----------cccc----hhhChHHHHHHCCCeEEEe
Confidence            2222223332   4456777777777654  44776443321           1111    1234467889999999999


Q ss_pred             CCCCC
Q 013050          310 SDHSP  314 (450)
Q Consensus       310 tD~~~  314 (450)
                      ||...
T Consensus       284 TDDp~  288 (345)
T cd01321         284 SDDPG  288 (345)
T ss_pred             CCCcc
Confidence            99653

>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3

Probab=95.76  E-value=0.25  Score=46.63  Aligned_cols=152  Identities=17%  Similarity=0.175  Sum_probs=77.0

Q ss_pred             CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHH
Q 013050          132 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA  211 (450)
Q Consensus       132 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  211 (450)
                      ++.|+.......      ......+...++.|++.|+++.+|+.+...                             ...
T Consensus       164 ~vvG~dl~g~E~------~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~-----------------------------~~~  208 (331)
T PF00962_consen  164 GVVGFDLAGDED------GGPPLKFAPAFRKAREAGLKLTVHAGETGG-----------------------------PEH  208 (331)
T ss_dssp             TEEEEEEESSTT------STTGGGHHHHHHHHHHTT-EEEEEESSSST-----------------------------HHH
T ss_pred             eEEEEEecCCcc------cCchHHHHHHHhhhcccceeecceecccCC-----------------------------ccc
Confidence            677776643221      223344888999999999999999954321                             112


Q ss_pred             HHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChh
Q 013050          212 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAA  291 (450)
Q Consensus       212 ~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (450)
                      +..++..+..        +   ++.|........+.++.+++.++  .+++||......+. +.              ..
T Consensus       209 ~~~ai~~l~~--------~---RIgHG~~~~~~p~l~~~~~~~~I--~iEvcptSN~~~~~-~~--------------~~  260 (331)
T PF00962_consen  209 IRDAILLLGA--------D---RIGHGVRLIKDPELLELLAERQI--PIEVCPTSNVQLGA-VP--------------SY  260 (331)
T ss_dssp             HHHHHHTST---------S---EEEE-GGGGGSHHHHHHHHHTT---EEEE-HHHHHHTTS-SS--------------TG
T ss_pred             ccchhhhccc--------e---eecchhhhhhhhHHHHHHHHhCC--CeeeCCCcCcccce-ee--------------ec
Confidence            3333333111        2   34555433245567777777765  45558875544321 10              11


Q ss_pred             hHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhH
Q 013050          292 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAK  368 (450)
Q Consensus       292 ~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~  368 (450)
                      ...++.+.++.|++++++||....                   .+..  +...+.. ....++|.++..+++ .|+.+
T Consensus       261 ~~hP~~~~~~~gv~v~i~TDd~~~-------------------~~~~--l~~ey~~~~~~~~l~~~~l~~l~-~nsi~  316 (331)
T PF00962_consen  261 EEHPLRKLLDAGVPVSINTDDPGV-------------------FGTT--LSDEYYLAAEAFGLSLADLKQLA-RNSIE  316 (331)
T ss_dssp             GG-CHHHHHHTT-EEEE--BSHHH-------------------HT-S--HHHHHHHHHHHHT--HHHHHHHH-HHHHH
T ss_pred             chhHHHHHHHcCCceeccCCCccc-------------------cCCC--cHHHHHHHHHHcCCCHHHHHHHH-HHHHH
Confidence            223467778999999999995321                   1111  3333333 456789998876554 34443

5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....

>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]

Probab=95.24  E-value=2.5  Score=39.00  Aligned_cols=172  Identities=19%  Similarity=0.188  Sum_probs=97.0

Q ss_pred             chHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccc
Q 013050          121 NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY  199 (450)
Q Consensus       121 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (450)
                      ..+++++.++ .|..+++......+    +..++..+..+++.|.++|++|.+|.......          ...    ..
T Consensus       114 a~~E~er~v~~~gf~g~~l~p~~~~----~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~----------~~~----~~  175 (293)
T COG2159         114 AAEELERRVRELGFVGVKLHPVAQG----FYPDDPRLYPIYEAAEELGVPVVIHTGAGPGG----------AGL----EK  175 (293)
T ss_pred             HHHHHHHHHHhcCceEEEecccccC----CCCCChHHHHHHHHHHHcCCCEEEEeCCCCCC----------ccc----cc
Confidence            4556666665 68889888543322    23455668899999999999999999543320          000    00


Q ss_pred             cCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecC--ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC
Q 013050          200 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS--DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG  277 (450)
Q Consensus       200 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~--~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~  277 (450)
                      ....|        -.+..++.+      +++.++.+.|+.  .. =..+.+..+. ....++.+.+...           
T Consensus       176 ~~~~p--------~~~~~va~~------fP~l~IVl~H~G~~~p-~~~~a~~~a~-~~~nvy~d~s~~~-----------  228 (293)
T COG2159         176 GHSDP--------LYLDDVARK------FPELKIVLGHMGEDYP-WELEAIELAY-AHPNVYLDTSGVR-----------  228 (293)
T ss_pred             CCCCc--------hHHHHHHHH------CCCCcEEEEecCCCCc-hhHHHHHHHH-hCCCceeeeeccc-----------
Confidence            00122        234455554      668999999997  32 2333333332 2223444332210           


Q ss_pred             CCceEEcCCCCChhhHHHHHHHHhc--CCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCH
Q 013050          278 DTRFKCAPPIRDAANKEKLWEALMD--GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL  355 (450)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~  355 (450)
                         .+..++        .+++.+..  .-.+++|||. |.....                       ..+......+++.
T Consensus       229 ---~~~~~~--------~~~~~~~~~~~dkilFGSD~-P~~~~~-----------------------~~l~~~~~l~l~~  273 (293)
T COG2159         229 ---PKYFAP--------PLLEFLKELGPDKILFGSDY-PAIHPE-----------------------VWLAELDELGLSE  273 (293)
T ss_pred             ---cccCCh--------HHHHHHHhcccCeEEecCCC-CCcCHH-----------------------HHHHHHHhcCCCH
Confidence               111111        22222222  2347899994 432111                       1223456778999


Q ss_pred             HHHHHHHhhchhHHhCC
Q 013050          356 EQLASWWSERPAKLAGQ  372 (450)
Q Consensus       356 ~~al~~aT~~~A~~lg~  372 (450)
                      +..-+..-.|+++++++
T Consensus       274 e~k~kiL~~NA~rll~l  290 (293)
T COG2159         274 EVKEKILGENAARLLGL  290 (293)
T ss_pred             HHHHHHHHHhHHHHhCc
Confidence            99999999999999998

>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]

Probab=94.54  E-value=0.56  Score=43.85  Aligned_cols=108  Identities=19%  Similarity=0.174  Sum_probs=67.1

Q ss_pred             CCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC
Q 013050          151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG  230 (450)
Q Consensus       151 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~  230 (450)
                      ..++.+.++++.++.+|+.+..|+.+...                             .+.+..++.+..-.        
T Consensus       182 ~p~~~f~~~f~~~r~~gl~lt~HaGE~~~-----------------------------~~~i~~al~~~~~~--------  224 (345)
T COG1816         182 YPPELFVSLFKLARDNGLKLTIHAGEAGG-----------------------------PESIRDALDLLGAE--------  224 (345)
T ss_pred             CCHHHHHHHHHHHHHcCceEEEeccccCC-----------------------------cHHHHHHHHHhchh--------
Confidence            46788999999999999999999954321                             22234444443321        


Q ss_pred             ceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcC
Q 013050          231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS  310 (450)
Q Consensus       231 ~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gt  310 (450)
                         .+.|..-..+..+.++.+...++++.+  ||.....           ....+++    ...++.++++.|+.+++.|
T Consensus       225 ---rI~HGi~~~~d~~L~~~l~~~qI~lev--CP~SNi~-----------~~~v~~~----~~hPf~~~~d~Gv~VsLnT  284 (345)
T COG1816         225 ---RIGHGIRAIEDPELLYRLAERQIPLEV--CPLSNIQ-----------LGVVPSL----AKHPFKKLFDAGVKVSLNT  284 (345)
T ss_pred             ---hhccccccccCHHHHHHHHHhCCeeEE--CCcchhh-----------cccccch----hhCcHHHHHHcCCceEEcC
Confidence               233443322555788888888876655  7754321           1112111    2234678899999999999


Q ss_pred             CCCCC
Q 013050          311 DHSPT  315 (450)
Q Consensus       311 D~~~~  315 (450)
                      |..+.
T Consensus       285 Ddp~~  289 (345)
T COG1816         285 DDPLY  289 (345)
T ss_pred             CChhh
Confidence            96544

>TIGR01431 adm_rel adenosine deaminase-related growth factor

Probab=92.70  E-value=4.4  Score=40.14  Aligned_cols=54  Identities=17%  Similarity=0.071  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCC
Q 013050          243 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS  313 (450)
Q Consensus       243 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~  313 (450)
                      ...+.++.+++.++.+  ++||-.....           ...+.++    ..++...++.|++++++||..
T Consensus       360 ~~P~l~~~vke~~I~l--EvCP~SN~~l-----------~~v~~~~----~HPl~~lla~Gvpv~InSDDP  413 (479)
T TIGR01431       360 KHPLVLQMLKERNIAV--EVNPISNQVL-----------QLVADLR----NHPCAYLFADNYPMVISSDDP  413 (479)
T ss_pred             CCHHHHHHHHHhCCeE--EECccchhhh-----------cccCCcc----cChHHHHHHCCCcEEEeCCCc
Confidence            4456677777777554  4477533221           1222221    234667799999999999964

Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.

>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]

Probab=92.44  E-value=8.4  Score=35.17  Aligned_cols=136  Identities=14%  Similarity=0.149  Sum_probs=68.9

Q ss_pred             CCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc
Q 013050           36 EAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV  115 (450)
Q Consensus        36 g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (450)
                      -.+.-|.++|+|.|+..+.....  .......+...|+..++..+ .  ...+ ............+.....++.++...
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~d--~s~v~~~a~~~~v~~~~v~g-t--~~~d-~~~~~~l~~~y~~~v~~t~G~HP~~~   84 (296)
T KOG3020|consen   11 RNFTNPMLEDIYCHIQAHPSDSD--ASQVLERAVQAGVSKLIVTG-T--SLKD-SKEALELAEKYPGSVYPTFGVHPHFS   84 (296)
T ss_pred             hhhcchhhchhhhccccCCCCcc--chHHHHHHHhccceEEEEeC-C--Ccch-HHHHHHHHhhCCCceeeccCcCCCcc
Confidence            34566789999999987654321  23345566888999998886 2  1122 22222222222222222222222211


Q ss_pred             C-CCc-----cchHHHHHHHHcC----CcEEEEe-cccCCCCCCC-CCCHHHHHHHHHHHHhcCCcEEEecCCh
Q 013050          116 P-ENA-----YNASALEALLNAG----VLGLKSF-MCPSGINDFP-MTNASHIKEGLSVLARYKRPLLVHAEME  177 (450)
Q Consensus       116 ~-~~~-----~~~~~~~~~~~~g----~~~~~~~-~~~~~~~~~~-~~~~~~l~~~~~~a~~~g~~v~~H~~~~  177 (450)
                      . ...     ...+++..+++.+    +..+..+ .++......+ .....-+++-+++|.+.++|+.+|.++.
T Consensus        85 ~~~~~~~~~~~~~~~L~~~~~~~~~~k~vAiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~r~a  158 (296)
T KOG3020|consen   85 QEFSDQSRKEKFLDTLLSIIENGFLPKVVAIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHCRSA  158 (296)
T ss_pred             cchhhccchhhHHHHHHHHHhhcccCCeEEeeccccccchhccCChHHHHHHHHHHHHHHHHccCCeeeechhh
Confidence            1 111     1345555555552    1122111 1111110001 1123447788999999999999999653

>PRK08392 hypothetical protein; Provisional

Probab=91.66  E-value=8.7  Score=33.61  Aligned_cols=34  Identities=15%  Similarity=0.119  Sum_probs=25.3

Q ss_pred             eeeccccCCCCCCcccchHHHHHHHHhCCceEEEeC
Q 013050           44 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM   79 (450)
Q Consensus        44 iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~   79 (450)
                      ||.|+|.....  ....+....+.+.+.|++.+.-.
T Consensus         1 ~D~H~HT~~sd--~~~~~~e~v~~A~~~Gl~~i~iT   34 (215)
T PRK08392          1 MDLHTHTVYSD--GIGSVRDNIAEAERKGLRLVGIS   34 (215)
T ss_pred             CccccCCCCcC--CcCCHHHHHHHHHHcCCCEEEEc
Confidence            69999987653  23447778889999999987543

>PRK08609 hypothetical protein; Provisional

Probab=91.54  E-value=18  Score=36.97  Aligned_cols=35  Identities=17%  Similarity=0.022  Sum_probs=25.9

Q ss_pred             eeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCC
Q 013050           44 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMP   80 (450)
Q Consensus        44 iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~   80 (450)
                      .|.|+|.....  ....+....+.+...|++.+.-..
T Consensus       336 ~DlH~HT~~sD--g~~sleemv~~A~~~Gl~~i~iTd  370 (570)
T PRK08609        336 GDLHMHTTWSD--GAFSIEEMVEACIAKGYEYMAITD  370 (570)
T ss_pred             CCccccCCCCC--CCCCHHHHHHHHHHCCCCEEEEeC
Confidence            39999987542  223477788888999999987654

>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]

Probab=91.37  E-value=11  Score=34.10  Aligned_cols=152  Identities=20%  Similarity=0.236  Sum_probs=81.4

Q ss_pred             EeccceeeccccCCCCCC--cc----------cchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCce
Q 013050           39 IMPGLIDVHAHLDDPGRT--EW----------EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYV  106 (450)
Q Consensus        39 v~PG~iD~H~H~~~~~~~--~~----------~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (450)
                      -+..+||+|.|+...+..  .|          -.+......+..+|+-..+-+=.+..+. +....+....+..+....+
T Consensus         5 ~~~~~IDtH~Hl~~~~~~~~pw~~~~~~~~~d~~~~dY~~~~~~~gv~~~V~vq~~~~~~-D~~~e~~~v~~~~~~~g~~   83 (279)
T COG3618           5 APQMIIDTHAHLWDPGALPYPWLADYEALRRDYLFEDYLALLKAHGVSGGVLVQVNVDPR-DNEKELAFVAELAERHGGI   83 (279)
T ss_pred             ccccccchhhhhhcccccCCCCCCcccccCCCCCHHHHHHHHHhcCcceeEEEecccCcc-chHHHHHHHHhhHHhhCce
Confidence            356789999999654311  01          1245556677888988776552122221 2222223333333322220


Q ss_pred             EEEEeccccCCCccchHHHHHHHHcC---CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhh
Q 013050          107 DVGFWGGLVPENAYNASALEALLNAG---VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH  183 (450)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~  183 (450)
                       ++.   +....++   ...++.+++   ..|+.... ..  ...+....+.+++.++..+++|+.+.++.....     
T Consensus        84 -vg~---id~~~~e---~~a~L~~~~~~~~~GvR~~l-~~--~p~~~~~a~~~r~~~~rL~~~gl~fdl~~~~~q-----  148 (279)
T COG3618          84 -VGV---IDECRPE---FAAKLERARYPFFRGVRRNL-HV--VPDGLFEAPAWRANVERLAKLGLHFDLQVDPHQ-----  148 (279)
T ss_pred             -EEE---EecCCch---HHHHHHHhcccccceeeehh-hc--CCccchhhHHHHHHHHHHHhcCCeEEEEeChhh-----
Confidence             111   1112222   233333344   44554422 11  111234447899999999999999999884322     


Q ss_pred             hhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050          184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD  240 (450)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~  240 (450)
                                                  +..++.++..      .+++++.+.|+..
T Consensus       149 ----------------------------l~~~i~l~~~------~Pd~~~VldH~G~  171 (279)
T COG3618         149 ----------------------------LPDLIPLALK------APDVNFVLDHCGR  171 (279)
T ss_pred             ----------------------------hHHHHHHHhh------CCCCCEEeccCCC
Confidence                                        3455555554      4588899999975

>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=88.01  E-value=1.4  Score=37.60  Aligned_cols=58  Identities=21%  Similarity=0.280  Sum_probs=35.6

Q ss_pred             ceeeccccCCC---CCCcccchHHHHHHHHhCCceEEEeCCCCCCCC-CCcHHHHHHHHHHH
Q 013050           43 LIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPS-TISTETLKLKVDAA  100 (450)
Q Consensus        43 ~iD~H~H~~~~---~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~-~~~~~~~~~~~~~~  100 (450)
                      +||.|+|.-..   +..+.+.....++.+...|||+++..++...+. ....+.+......+
T Consensus         1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~l   62 (254)
T COG4464           1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQL   62 (254)
T ss_pred             CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHH
Confidence            58999998432   222334455668888999999999876333332 33344444444433

>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]

Probab=83.71  E-value=30  Score=32.95  Aligned_cols=106  Identities=18%  Similarity=0.169  Sum_probs=59.4

Q ss_pred             CHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCc
Q 013050          152 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA  231 (450)
Q Consensus       152 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~  231 (450)
                      +...+...+..+.+.|+.+.+|+.+...                            ....+..++++..-        ..
T Consensus       225 p~~~f~~vl~~~~~~gi~~t~HaGE~~~----------------------------~~~~v~~~LD~l~~--------~R  268 (399)
T KOG1097|consen  225 PLSLFLEVLAKAPAKGIHLTFHAGETNG----------------------------GASVVKNALDLLGT--------ER  268 (399)
T ss_pred             ChhhhHHHHHhhhhcCCcEEEEccccCC----------------------------ChHHHHHHHHhhCC--------cc
Confidence            4455666666677799999999955320                            02234555553332        11


Q ss_pred             eEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCC
Q 013050          232 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSD  311 (450)
Q Consensus       232 ~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD  311 (450)
                      -=|..++.   ...+.+..++..++.+.+  ||......           ....+++    ...+...++.|+++++.||
T Consensus       269 IGHG~~l~---~dp~L~~~~k~~nI~lEi--CP~SN~vl-----------~~v~d~r----nhp~~~~~~~~vP~vI~sD  328 (399)
T KOG1097|consen  269 IGHGYFLT---KDPELINLLKSRNIALEI--CPISNQVL-----------GLVSDLR----NHPVARLLAAGVPVVINSD  328 (399)
T ss_pred             ccCceecc---CCHHHHHHHHhcCceEEE--ccchhhhe-----------ecccccc----ccHHHHHHhCCCCEEEeCC
Confidence            12223333   344667777777765544  87643221           1222222    2345677889999999999


Q ss_pred             CC
Q 013050          312 HS  313 (450)
Q Consensus       312 ~~  313 (450)
                      ..
T Consensus       329 DP  330 (399)
T KOG1097|consen  329 DP  330 (399)
T ss_pred             Cc
Confidence            53

>PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3

Probab=82.91  E-value=0.85  Score=34.50  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=17.7

Q ss_pred             CcceeEEEeCCEEEEeccCCCC
Q 013050            1 MCKRAVEIKEGNIISIVSEEDW   22 (450)
Q Consensus         1 ~~~~~V~I~~g~I~~Ig~~~~~   22 (450)
                      ++++||.|+||||+.||...++
T Consensus        81 I~KADIGIkdG~I~gIGkAGNP  102 (121)
T PF00449_consen   81 IVKADIGIKDGRIVGIGKAGNP  102 (121)
T ss_dssp             EEEEEEEEETTEEEEEE-EB-T
T ss_pred             cEEeeEEeeCCEEEEEeccCCc
Confidence            4689999999999999987664

5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O ....

>PRK06361 hypothetical protein; Provisional

Probab=82.64  E-value=3.5  Score=35.95  Aligned_cols=57  Identities=14%  Similarity=0.052  Sum_probs=40.7

Q ss_pred             HHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          296 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       296 l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      +..+.+.|+.++++||....  ...                 . ............|++.++++.+.+.||+.++++
T Consensus       154 l~~a~~~gi~vv~~SDaH~~--~d~-----------------~-~~~~~~~i~~~~gl~~~~v~~~~~~~~~~~~~~  210 (212)
T PRK06361        154 ARIAREAGAPLVINTDTHAP--SDL-----------------I-TYEFARKVALGAGLTEKELEEALENNPKLLLKR  210 (212)
T ss_pred             HHHHHHhCCcEEEECCCCCH--HHH-----------------H-HHHHHHHHHcCCCCCHHHHHHHHHHhHHHHHHh
Confidence            34455569999999997621  110                 0 133344556788999999999999999999875

>PRK00912 ribonuclease P protein component 3; Provisional

Probab=81.19  E-value=6.4  Score=35.02  Aligned_cols=67  Identities=13%  Similarity=-0.009  Sum_probs=47.7

Q ss_pred             HHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC--C
Q 013050          296 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ--V  373 (450)
Q Consensus       296 l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~--~  373 (450)
                      +....+.|++++++||........                    ........++..|++.++++.+.+.+|.+++.+  .
T Consensus       160 ~~~~~~~g~piiisSdAh~~~~l~--------------------~~~~~~~l~~~~Gl~~~~~~~~~~~~~~~i~~~~~~  219 (237)
T PRK00912        160 LALARKYDFPLVLTSGAMSCYDLR--------------------SPREMIALAELFGMEEDEALKALSYYPESIIKKNRN  219 (237)
T ss_pred             HHHHHhcCCCEEEeCCCCcccccC--------------------CHHHHHHHHHHcCCCHHHHHHHHHHhHHHHHHhhcc
Confidence            344555699999999965321110                    134445667899999999999999999999998  4


Q ss_pred             CCCccccCC
Q 013050          374 SKGAIAIGN  382 (450)
Q Consensus       374 ~~G~I~~G~  382 (450)
                      +.+.|..|.
T Consensus       220 ~~~~~~~~~  228 (237)
T PRK00912        220 RKNYVIEGV  228 (237)
T ss_pred             CCCcccccE
Confidence            456666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	450
3hm7_A	448	Crystal Structure Of Allantoinase From Bacillus Hal		3e-63
3e74_A	473	Crystal Structure Of E. Coli Allantoinase With Iron		1e-57
1gkr_A	458	L-Hydantoinase (Dihydropyrimidinase) From Arthrobac		3e-27
3d6n_A	422	Crystal Structure Of Aquifex Dihydroorotase Activat		4e-27
1xrf_A	467	The Crystal Structure Of A Novel, Latent Dihydrooro		4e-27
3mpg_A	428	Dihydroorotase From Bacillus Anthracis Length = 428		2e-25
1yny_A	461	Molecular Structure Of D-Hydantoinase From A Bacill		4e-25
3sfw_A	461	Crystal Structure Of Dihydropyrimidinase From Brevi		7e-23
1k1d_A	460	Crystal Structure Of D-Hydantoinase Length = 460		1e-21
2z00_A	426	Crystal Structure Of Dihydroorotase From Thermus Th		3e-19
1nfg_A	457	Structure Of D-Hydantoinase Length = 457		5e-19
3gri_A	424	The Crystal Structure Of A Dihydroorotase From Stap		6e-18
3dc8_A	490	Crystal Structure Of Dihydropyrimidinase From Sinor		1e-17
1gkp_A	458	D-Hydantoinase (Dihydropyrimidinase) From Thermus S		3e-15
2gwn_A	452	The Structure Of Putative Dihydroorotase From Porph		8e-15
2fty_A	559	Crystal Structure Of Dihydropyrimidinase From Sacch		9e-14
4b91_A	484	Crystal Structure Of Truncated Human Crmp-5 Length		2e-11
4b90_A	586	Crystal Structure Of Wt Human Crmp-5 Length = 586		2e-11
2ftw_A	521	Crystal Structure Of Dihydropyrimidinase From Dicty		2e-10
2vr2_A	541	Human Dihydropyrimidinase Length = 541		7e-10
1kcx_A	518	X-Ray Structure Of Nysgrc Target T-45 Length = 518		6e-09
2gse_A	501	Crystal Structure Of Human Dihydropyrimidinease-Lik		2e-06

>pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans C-125 Length = 448

Iteration: 1
 Score =  239 bits (610), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 223/434 (51%), Gaps = 24/434 (5%)
Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXX 65
           V I+ G I+S ++E     +S  G  +D     + PG++DVH H ++PGRTEWEGF S  
Sbjct: 26  VAIRNG-IVSAITEPG-SISSDDGPAIDGTGLHLFPGMVDVHVHFNEPGRTEWEGFASGS 83
Query: 66  XXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
                       DMPLNS+P TI+ E L  K   A ++  VD  FWGGLVP    N   L
Sbjct: 84  KSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVPG---NIDHL 140
Query: 126 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK--GSERH 183
           + L + GV+G K+FM   G +DF  ++   + +G+  +A     L VHAE  +   +   
Sbjct: 141 QDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAALGSILAVHAESNEMVNALTT 200
Query: 184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXX 243
           + +E+  L  + YS   + RP   E  A+  +L  A+ T          +HI H      
Sbjct: 201 IAIEEQRLTVKDYS---EARPIVSELEAVERILRFAQLT-------CCPIHICHVSSRKV 250
Query: 244 XXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 303
                 +AK  G +++VETCPHYL FS +E  +     KCAPP+R+    E LW+ LM G
Sbjct: 251 LKRIK-QAKGEGVNVSVETCPHYLLFSLDEFAEIGYLAKCAPPLRERQEVEDLWDGLMAG 309
Query: 304 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWW 362
            ID++SSDHSP++P++K        + WGGI+  Q  L V  + G  K  + L Q+    
Sbjct: 310 EIDLISSDHSPSLPQMK--TGKTIFEVWGGIAGCQNTLAVMLTEGYHKRKMPLTQIVQLL 367
Query: 363 SERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGK 421
           S  PAK  G    KG I +G  A   + +    + L N   ++ +HP IS Y+G+R  GK
Sbjct: 368 STEPAKRFGLYPQKGTIQVGAEASFTLIDLNESYTL-NASDLYYRHP-ISPYVGQRFRGK 425
Query: 422 VLATISRGNLVYKE 435
           V  TI +G  VY++
Sbjct: 426 VKHTICQGKHVYQD 439

>pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions At The Metal Center Length = 473

Iteration: 1
 Score =  220 bits (561), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 142/423 (33%), Positives = 200/423 (47%), Gaps = 32/423 (7%)
Query: 30  QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIS 89
           +V D    V+ PG +D H H+ +PGR+ WEG+ +             I+ PLN  P+T+ 
Sbjct: 62  EVXDASGLVVSPGXVDAHTHISEPGRSHWEGYETGTRAAAKGGITTXIEXPLNQLPATVD 121
Query: 90  TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI---- 145
             +++LK DAA+ ++ +D    GGLV   +YN   L  L   GV+G   F+   G     
Sbjct: 122 RASIELKFDAAKGKLTIDAAQLGGLV---SYNIDRLHELDEVGVVGFXCFVATCGDRGID 178
Query: 146 NDFPMTNASHIKEGLSVLARYKRPLLVHAEM-----EKGSERHVKLEDDTLDTRSYSTYL 200
           NDF   N     +G   L    +P+LVH E      E G E   K E       +   Y+
Sbjct: 179 NDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEE--AKREGRV----TAHDYV 232
Query: 201 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITV 260
            +RP   E  AIR +L +AK         G  LH+ H             A+  G  IT 
Sbjct: 233 ASRPVFTEVEAIRRVLYLAK-------VAGCRLHVCHVSSPEGVEEV-TRARQEGQDITC 284
Query: 261 ETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 320
           E+CPHY     ++  +  T  KC+PPIRD  N++  WE L +G ID L SDHSP  PE K
Sbjct: 285 ESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGXWEKLFNGEIDCLVSDHSPCPPEXK 344
Query: 321 LLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIA 379
               GN  KAWGGI+ LQ    V +    +K G +L       +   A + G   KG IA
Sbjct: 345 ---AGNIXKAWGGIAGLQSCXDVXFDEAVQKRGXSLPXFGKLXATNAADIFGLQQKGRIA 401
Query: 380 IGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 439
            G  AD V  +P + + L ND  +  +H  +S Y+GR +  ++  TI RG+++Y      
Sbjct: 402 PGKDADFVFIQPNSSYVLTNDD-LEYRH-KVSPYVGRTIGARITKTILRGDVIYDIEQGF 459
Query: 440 PAA 442
           P A
Sbjct: 460 PVA 462

>pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter Aurescens Length = 458

Iteration: 1
 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 196/437 (44%), Gaps = 31/437 (7%)
Query: 8   IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG-RTEWEGFPSXXX 66
           +K+G + +I ++      S+T   +D G   +MPG++D H H+ D   +  +  F     
Sbjct: 24  VKDGKVAAISADTSDVEASRT---IDAGGKFVMPGVVDEHVHIIDMDLKNRYGRFELDSE 80
Query: 67  XXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALE 126
                    +I+MP+   P+T     L+ K  A + R+ VD   +GG VP N      + 
Sbjct: 81  SAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQ-RLKVDFALYGGGVPGNL---PEIR 136
Query: 127 ALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME---KGSERH 183
            + +AG +G  S M  S    F   +   + E    +A     ++VHAE E   +  ++ 
Sbjct: 137 KMHDAGAVGFXSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQ 196
Query: 184 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXX 243
           +K        +  + Y  ++P   E  AI+  L + K+        G  L ++H      
Sbjct: 197 IK----AAGGKDMAAYEASQPVFQENEAIQRALLLQKEA-------GCRLIVLHVSNPDG 245
Query: 244 XXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 303
                 +A++ G  +  E+ P YL  + ++        K APP+R A    +LWE L +G
Sbjct: 246 VELIH-QAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVRSAEMNIRLWEQLENG 304
Query: 304 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWW 362
            ID L SDH     E K     +  KA  G   L+  LP+  + G   G ++LE+L    
Sbjct: 305 LIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVEVM 364
Query: 363 SERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDH--PVHMKHPSISAYLGRRLS 419
            E+PAKL G    KG + +G+ ADL++ + + + ++D      +H   P    + G  ++
Sbjct: 365 CEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDTKVDASQFRSLHKYSP----FDGMPVT 420
Query: 420 GKVLATISRGNLVYKEG 436
           G  + T+ RG +V ++G
Sbjct: 421 GAPVLTMVRGTVVAEKG 437

>pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By Aspartate Transcarbamoylase Length = 422

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 181/409 (44%), Gaps = 33/409 (8%)
Query: 30  QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIS 89
           +++D    ++ PG ID+H HL DPG+T  E   S            ++ MP N++P   +
Sbjct: 44  EIIDAKGLIVCPGFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDN 102
Query: 90  TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-F 148
           T  +   +  ++      VG    L           + +  A    LK   C +  +D  
Sbjct: 103 TTVVNYILQKSK-----SVGLCRVLPTGTITKGRKGKEI--ADFYSLKEAGCVAFTDDGS 155
Query: 149 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL--KTRPPS 206
           P+ ++S +++ L + ++   P++ H E +K       L    ++    S  L   +R P 
Sbjct: 156 PVMDSSVMRKALELASQLGVPIMDHCEDDK-------LAYGVINEGEVSALLGLSSRAPE 208
Query: 207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHY 266
            EE  I     +A+ T       G H+HI H              K  G  IT E  P++
Sbjct: 209 AEEIQIARDGILAQRT-------GGHVHIQHVSTKLSLEIIEF-FKEKGVKITCEVNPNH 260
Query: 267 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGN 326
           L F+  E+ +     +  PP+R   ++  L E +  G ID  ++DH+P     K L E  
Sbjct: 261 LLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKELVEF- 319
Query: 327 FLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADL 386
              A  GI  LQ  LP      RK  ++L++L   ++  PA++ G V  G + +G+ AD+
Sbjct: 320 ---AMPGIIGLQTALPSALELYRKGIISLKKLIEMFTINPARIIG-VDLGTLKLGSPADI 375
Query: 387 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435
            +++P  E+ L+ +   ++     +   G+ L GKV+ TI  G +VYK+
Sbjct: 376 TIFDPNKEWILNEE--TNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 422

>pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase From Aquifex Aeolicus At 1.7 A Resolution Length = 467

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 181/409 (44%), Gaps = 33/409 (8%)
Query: 30  QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIS 89
           +++D    ++ PG ID+H HL DPG+T  E   S            ++ MP N++P   +
Sbjct: 89  EIIDAKGLIVCPGFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDN 147
Query: 90  TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-F 148
           T  +   +  ++      VG    L           + +  A    LK   C +  +D  
Sbjct: 148 TTVVNYILQKSK-----SVGLCRVLPTGTITKGRKGKEI--ADFYSLKEAGCVAFTDDGS 200
Query: 149 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL--KTRPPS 206
           P+ ++S +++ L + ++   P++ H E +K       L    ++    S  L   +R P 
Sbjct: 201 PVMDSSVMRKALELASQLGVPIMDHCEDDK-------LAYGVINEGEVSALLGLSSRAPE 253
Query: 207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHY 266
            EE  I     +A+ T       G H+HI H              K  G  IT E  P++
Sbjct: 254 AEEIQIARDGILAQRT-------GGHVHIQHVSTKLSLEIIEF-FKEKGVKITCEVNPNH 305
Query: 267 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGN 326
           L F+  E+ +     +  PP+R   ++  L E +  G ID  ++DH+P     K L E  
Sbjct: 306 LLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKELVE-- 363
Query: 327 FLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADL 386
              A  GI  LQ  LP      RK  ++L++L   ++  PA++ G V  G + +G+ AD+
Sbjct: 364 --FAMPGIIGLQTALPSALELYRKGIISLKKLIEMFTINPARIIG-VDLGTLKLGSPADI 420
Query: 387 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435
            +++P  E+ L+ +   ++     +   G+ L GKV+ TI  G +VYK+
Sbjct: 421 TIFDPNKEWILNEE--TNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 467

>pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis Length = 428

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 158/375 (42%), Gaps = 34/375 (9%)
Query: 30  QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIS 89
           +V+D    +I PGL+DVH HL +PG    E   +            +  MP N+ P    
Sbjct: 42  EVIDVNGKLIAPGLVDVHVHLREPGGEHKETIETGTLAAAKGGFTTICAMP-NTRPVPDC 100
Query: 90  TETLKLKVDAAEKRIYVDVGFWGGL-VPENAYNASALEALLNAGVLGLKSFMCPSGINDF 148
            E ++   +  +++ +V+V  +G + V +     +  E L   G             +  
Sbjct: 101 REHMEDLQNRIKEKAHVNVLPYGAITVRQAGSEMTDFETLKELGAFAFTD-------DGV 153
Query: 149 PMTNASHIKEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRP 204
            + +AS +   +   A+    ++ H E    + KG     K         S    L   P
Sbjct: 154 GVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCVHEGKF--------SEKHGLNGIP 205
Query: 205 PSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCP 264
              E   I   + +A+       A   H H+ H            +AK  G  +T E  P
Sbjct: 206 SVCESVHIARDILLAE-------AADCHYHVCHVSTKGSVRVIR-DAKRAGIKVTAEVTP 257
Query: 265 HYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDE 324
           H+L    ++IP  D  FK  PP+R   + E L E L+DG IDM+++DH+P   E K    
Sbjct: 258 HHLVLCEDDIPSADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEK---A 314
Query: 325 GNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQVSKGAIAIGNH 383
               +A  GI+  +   P+ ++   K G +TLEQL  + +E+PA   G +  G +  G  
Sbjct: 315 QGIERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFG-LEAGRLKEGRT 373
Query: 384 ADLVVWEPEAEFELD 398
           AD+ + + E E E+D
Sbjct: 374 ADITIIDLEQEEEID 388

>pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp. Ar9: Evidence For Mercury Inhibition Length = 461

Iteration: 1
 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 187/419 (44%), Gaps = 36/419 (8%)
Query: 32  VDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIS 89
           +D     ++PG ID H HLD P  G    + F +            ++D  L     T  
Sbjct: 43  IDATGCYVIPGGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCL-----TKK 97
Query: 90  TETLKLKV----DAAEKRIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSG 144
            E+LK  +    + A  +  +D GF   +   N      LE+++++ G+  LK FM    
Sbjct: 98  GESLKSAIATWHEKARGKAVIDYGFHLMIAEANDQVLEELESVISSEGITSLKVFMAYK- 156
Query: 145 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY-LKTR 203
            N F   + +  K   +++   +   LV    E G       +    +  +   Y   TR
Sbjct: 157 -NVFQADDETLFK---TLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTR 212
Query: 204 PPSWE-EAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVET 262
           PP  E EA  R +   A          G+ L++VH            EA+  G ++  ET
Sbjct: 213 PPEAEGEATGRAIALTA--------LAGSQLYVVHVSCASAVQRIA-EAREKGWNVYGET 263
Query: 263 CPHYLAF--SAEEIPDGD-TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPE 318
           CP YLA   S  + PD +  ++  +PP+R+  N+E LW AL +G +  + SDH P     
Sbjct: 264 CPQYLALDVSIMDQPDFEGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRG 323
Query: 319 LKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKG 376
            K L  G+F K   G   ++  L + +S G + G ++L Q     S + AKL G    KG
Sbjct: 324 QKELGRGDFTKIPNGGPLIEDRLTILYSEGVRQGRISLNQFVDISSTKAAKLFGMFPRKG 383
Query: 377 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435
            IA+G+ AD+V+++P  +  L  +   H  +   + + G  + G+V++ +SRG+ V ++
Sbjct: 384 TIAVGSDADIVIFDPHVKRTLSVE--THHMNVDYNPFEGMEVYGEVVSVLSRGSFVVRD 440

>pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From Brevibacillus Agri Nchu1002 Length = 461

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 185/418 (44%), Gaps = 32/418 (7%)
Query: 30  QVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPST 87
           +V+D     ++PG ID H HLD P  G    + F +            ++D  L S   +
Sbjct: 41  EVIDATGYYLLPGGIDPHTHLDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTSKGES 100
Query: 88  ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMCPSGIN 146
           + +        A  K + +D GF   +   N +    LE+++N  G+  L  FM    + 
Sbjct: 101 LHSAIATWHEKARGKAV-IDYGFHLMVSDANDHVLEELESVVNNEGITSLXVFMAYKNV- 158
Query: 147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK--LEDDTLDTRSYSTYLKTRP 204
              M +   + + L         + VHAE     +   K  L +   D   Y  Y  TRP
Sbjct: 159 --LMADDETLFKTLIRAKELGALVQVHAENGDVLDYLTKQALAEGNTDP-IYHAY--TRP 213
Query: 205 PSWE-EAAIREL-LTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVET 262
           P  E EA  R + LT   D         A L++VH            EA+  G ++  ET
Sbjct: 214 PEAEGEATGRAIALTALAD---------AQLYVVHVSCADAVRRIA-EAREKGWNVYGET 263
Query: 263 CPHYLAF--SAEEIPDGD-TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPE 318
           CP YL    +A E PD +  ++  +PP+R+  N++ LW AL +G +  + SDH P     
Sbjct: 264 CPQYLVLDITALEKPDFEGAKYVWSPPLREKWNQDVLWSALKNGILQTVGSDHCPFNFSG 323
Query: 319 LKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQV-SKG 376
            K L   +F K   G   ++  + + +S G RK  ++L Q     S + AKL G    KG
Sbjct: 324 QKELGRRDFTKIPNGGPIIEDRMTILFSEGVRKGKISLNQFVDITSTKVAKLFGMFPQKG 383
Query: 377 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434
            IA+G+ AD+V+++P  +  +  +   H  +   + + G ++ G V++ +SRG  V +
Sbjct: 384 TIAVGSDADIVLFDPTVQRTISVE--THHMNVDYNPFEGMQVHGDVISVLSRGAFVVR 439

>pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase Length = 460

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 184/443 (41%), Gaps = 40/443 (9%)
Query: 8   IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSXX 65
           IK+G I  I    +     K  +V+D     + PG ID H HLD P  G    + F S  
Sbjct: 23  IKDGKIAMIGQNLE----EKGAEVIDAKGCYVFPGGIDPHTHLDMPLGGTVTKDDFESGT 78
Query: 66  XXXXXXXXXXLIDMPLNS--DPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
                     +ID  L +  +P   + ET   K   A  +  +D GF    +  +     
Sbjct: 79  IAAAFGGTTTIIDFCLTNKGEPLKKAIETWHNK---ANGKAVIDYGFH---LMISEITDD 132
Query: 124 ALE----ALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 179
            LE     L   G+  L  FM     N F   + +      ++LA  +   LV    E G
Sbjct: 133 VLEELPKVLEEEGITSLXVFMAYK--NVFQADDGTLY---CTLLAAKELGALVMVHAENG 187
Query: 180 SERHVKLEDDTLDTRSYSTY-LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHX 238
                  +    D  +   Y   TRPP  E  A      + +         G+ L++VH 
Sbjct: 188 DVIDYLTKKALADGNTDPIYHALTRPPELEGEATGRACQLTE-------LAGSQLYVVHV 240
Query: 239 XXXXXXXXXXMEAKTNGDSITVETCPHYLAF--SAEEIPDGD-TRFKCAPPIRDAANKEK 295
                      EA+  G  +  ETCP YL    S  E P+ +  ++  +PP+R+  ++E 
Sbjct: 241 TCAQAVEKIA-EARNKGLDVWGETCPQYLVLDQSYLEKPNFEGAKYVWSPPLREKWHQEV 299
Query: 296 LWEALMDGHIDMLSSDH-SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-V 353
           LW AL +G +  L SD  S      K L  G+F K   G   ++  + + +S G K G +
Sbjct: 300 LWNALKNGQLQTLGSDQCSFDFKGQKELGRGDFTKIPNGGPIIEDRVSILFSEGVKKGRI 359
Query: 354 TLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISA 412
           TL Q     S R AKL G    KG I +G+ ADLV+++P  E  +  +   H      +A
Sbjct: 360 TLNQFVDIVSTRIAKLFGLFPKKGTIVVGSDADLVIFDPNIERVISAE--THHMAVDYNA 417
Query: 413 YLGRRLSGKVLATISRGNLVYKE 435
           + G +++G+ ++ + RG  V ++
Sbjct: 418 FEGMKVTGEPVSVLCRGEFVVRD 440

>pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus Thermophilus Length = 426

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 167/394 (42%), Gaps = 37/394 (9%)
Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXX 65
           V I EG I+S+          +  QVVD     + PG +D+HAHL +PG    E   S  
Sbjct: 21  VLIGEGRILSL-------EGGEAKQVVDGTGCFLAPGFLDLHAHLREPGEEVKEDLFSGL 73
Query: 66  XXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
                     L+  P N+ P   + E ++   + A+            L     + A+AL
Sbjct: 74  LAAVRGGYTDLVSXP-NTKPPVDTPEAVRALKEKAK-----------ALGLARLHPAAAL 121
Query: 126 EALLNAGVLGLKSFMCPSG---INDFPMTN--ASHIKEGLSVLARYKRPLLVHAEMEKGS 180
                   L     +  +G   + D   TN  A  +  GL   A    P+ VHAE + G 
Sbjct: 122 TEKQEGKTLTPAGLLREAGAVLLTDDGRTNEDAGVLAAGLLXAAPLGLPVAVHAE-DAGL 180
Query: 181 ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXX 240
            R+    D  L   +    L   PP  E A I   L V +      PA    LH+ H   
Sbjct: 181 RRNGVXNDGPL---ADLLGLPGNPPEAEAARIARDLEVLRYALRRSPAT-PRLHVQHLST 236
Query: 241 XXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEAL 300
                    EAK  G  +T E  PH+L  + E +   D  FK APP+R   ++E L E L
Sbjct: 237 KRGLELVR-EAKRAGLPVTAEATPHHLTLTEEALRTFDPLFKVAPPLRGEEDREALLEGL 295
Query: 301 MDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQL 358
           +DG +D +++DH+P T+ E     E + L+A  GI SL+   P+ ++    K G  L++L
Sbjct: 296 LDGTLDAIATDHAPHTLAE----KEKDLLRAPFGIPSLEVAFPLLYTELHLKRGFPLQRL 351
Query: 359 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE 392
              +++ P ++ G +    +  G  A LV+  P+
Sbjct: 352 VELFTDGPRRVLG-LPPLHLEEGAEASLVLLSPK 384

>pdb|1NFG|A Chain A, Structure Of D-Hydantoinase Length = 457

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 139/320 (43%), Gaps = 21/320 (6%)
Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 184
           LE L + G+     FM   G+N   M +   + + L    +    ++VHAE   G     
Sbjct: 136 LEVLPDLGITSFXVFMAYRGMN---MIDDVTLLKTLDKAVKTGSLVMVHAE--NGDAADY 190
Query: 185 KLEDDTLDTRSYSTY-LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXX 243
             +    + ++   Y   +RPP  E  A    L +A+          A ++IVH      
Sbjct: 191 LRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVN-------APIYIVHVTCEES 243
Query: 244 XXXXXMEAKTNGDSITVETCPHYLAFSAEEI--PDGD-TRFKCAPPIRDAANKEKLWEAL 300
                M AK+ G     ETC HYL  + E++  PD +  ++   PP R   + + LW AL
Sbjct: 244 LEEV-MRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKYVFTPPARAKKDHDVLWNAL 302
Query: 301 MDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 359
            +G  + +SSDH        K     +F     G   ++  L + +    +  ++L Q  
Sbjct: 303 RNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQGVNEGRISLTQFV 362
Query: 360 SWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL 418
              + RPAK+ G    KG IA+G+ AD+V+W+PEAE  +  +          S+Y G ++
Sbjct: 363 ELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVI--EQTAMHNAMDYSSYEGHKV 420
Query: 419 SGKVLATISRGNLVYKEGNH 438
            G     + RG ++  EG++
Sbjct: 421 KGVPKTVLLRGKVIVDEGSY 440

>pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From Staphylococcus Aureus Length = 424

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 173/433 (39%), Gaps = 42/433 (9%)
Query: 10  EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXX 69
           +G +I  ++    P N     ++D     + PG +DVH HL +PG    E   +      
Sbjct: 23  DGKVIKQIAPAIEPSNGV--DIIDAKGHFVSPGFVDVHVHLREPGGEYKETIETGTKAAA 80
Query: 70  XXXXXXLIDMPLNSDPSTISTETL----KLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
                 +   P N+ P   S E      KL  D A+ R+   + +      +        
Sbjct: 81  RGGFTTVCPXP-NTRPVPDSVEHFEALQKLIDDNAQVRV---LPYASITTRQLGKELVDF 136
Query: 126 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE---MEKGSER 182
            AL+  G           G+    +  AS   EG    A+  + ++ H E   +  G   
Sbjct: 137 PALVKEGAFAFTD----DGVG---VQTASXXYEGXIEAAKVNKAIVAHCEDNSLIYGGAX 189
Query: 183 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXX 242
           H          RS    +   P   E   I   + +A+       A G H H+ H     
Sbjct: 190 HEG-------KRSKELGIPGIPNICESVQIARDVLLAE-------AAGCHYHVCHVSTKE 235
Query: 243 XXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 302
                  +AK  G  +T E  PH+L  + ++IP  +  +K  PP+R   ++E L E L+D
Sbjct: 236 SVRVI-RDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKXNPPLRSTEDREALLEGLLD 294
Query: 303 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASW 361
           G ID +++DH+P   + K        KA  GI   +   P+ +++  K G  TL+QL  +
Sbjct: 295 GTIDCIATDHAPHARDEKAQPXE---KAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDY 351
Query: 362 WSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGK 421
            + +P +    +  G +    +ADL + + ++E E+  +    +     + ++G ++ G 
Sbjct: 352 LTIKPCETF-NLEYGTLKENGYADLTIIDLDSEQEIKGED--FLSKADNTPFIGYKVYGN 408
Query: 422 VLATISRGNLVYK 434
            + T   G + ++
Sbjct: 409 PILTXVEGEVKFE 421

>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From Sinorhizobium Meliloti Length = 490

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 110/454 (24%), Positives = 178/454 (39%), Gaps = 51/454 (11%)
Query: 3   KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEG 60
           K  V+++ G I+ I        N    + +D     +MPG ID H HL+ P  G    + 
Sbjct: 18  KADVKVEGGRIVEI------GPNLSGAETLDATGCYVMPGGIDPHTHLEMPFMGTYSSDD 71
Query: 61  FPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF------WGGL 114
           F S            ++D  L S P     E L +  D    R   D  F      WG  
Sbjct: 72  FESGTRAALAGGTTMVVDFALPS-PGQSLLEALTMW-DNKSTRANCDYSFHMAITWWG-- 127
Query: 115 VPENAYNASALEALL-NAGVLGLKSFMCPSG---INDFPMTNASHIKEGLSVLARYKRPL 170
             E  +N   +E ++ + G+     FM   G   ++D  M ++      L  L       
Sbjct: 128 --EQVFNE--METIVKDKGINTFXHFMAYKGALMVDDDEMFSSFQRCAALGALP------ 177
Query: 171 LVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 229
           LVHAE  +  ++   KL  +         Y  +RP   E  A    + +A          
Sbjct: 178 LVHAENGDVVAQLQAKLLAEGNSGPEAHAY--SRPAEVEGEAANRAIMIAD-------MA 228
Query: 230 GAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFKCAP 285
           G  ++IVH             A+  G  +  E    +L     E  D D     R   +P
Sbjct: 229 GCPVYIVHTSCEQAHEAIR-RARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRVMSP 287
Query: 286 PIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW 345
           P R+  +++ LW  L  G + ++++DH     E K    G+F +   G   L+  +P+ W
Sbjct: 288 PFRNKLHQDSLWAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGLEDRMPMLW 347
Query: 346 SYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPV 403
           +YG   G +T+ +  +  S   AK+      KGAI +G  ADLVVW+P+    +      
Sbjct: 348 TYGVATGRITMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRSKTISAK--T 405
Query: 404 HMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 437
                  + + G+ ++G    T++RG +  +EG 
Sbjct: 406 QQSAIDYNVFEGKTVTGLPRFTLTRGVVSIEEGT 439

>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In Space Group C2221 Length = 458

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 171/424 (40%), Gaps = 40/424 (9%)
Query: 30  QVVDYGEAVIMPGLIDVHAHLDDPGRTEW--EGFPSXXXXXXXXXXXXLIDM--PLNSDP 85
           +V+D     + PG ID H H+  P    +  +   +             I+M  P  +D 
Sbjct: 41  EVIDATGKYVFPGFIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDD 100
Query: 86  STISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPS-- 143
           +    E  +L    AE   Y D  F   +   +      L  ++  G+     F+     
Sbjct: 101 AL---EGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFXIFLSYKNF 157
Query: 144 -GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKT 202
            G++D  M     + + L V+      +  H E    +E   +L+   L           
Sbjct: 158 FGVDDGEMYQTLRLAKELGVI------VTAHCE---NAELVGRLQQKLLSEGKTG----- 203
Query: 203 RPPSWEEAAIRELLTVAKDTR--TDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITV 260
             P W E +  E +      R  T     GA  ++VH           M AK  G  I +
Sbjct: 204 --PEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLSCKPALDAA-MAAKARGVPIYI 260
Query: 261 ETC-PHYL--AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVP 317
           E+  PH+L     AE       ++  +PP+RD  N++ LW+AL  G ID + +DH P   
Sbjct: 261 ESVIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDT 320
Query: 318 ELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SK 375
           E KLL +  F     GI +++  + + ++YG   G + + +     S + AKL G    K
Sbjct: 321 EQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRK 380
Query: 376 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPS--ISAYLGRRLSGKVLATISRGNLVY 433
           G IA+G+ ADLVV++P+    +     V  +H +   + + G  + G+      RG +  
Sbjct: 381 GTIAVGSDADLVVYDPQYRGTIS----VKTQHVNNDYNGFEGFEIDGRPSVVTVRGKVAV 436
Query: 434 KEGN 437
           ++G 
Sbjct: 437 RDGQ 440

>pdb|2GWN|A Chain A, The Structure Of Putative Dihydroorotase From Porphyromonas Gingivalis Length = 452

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 179/436 (41%), Gaps = 29/436 (6%)
Query: 10  EGNIISIVSEEDWPR--NSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXX 67
           +G  IS + E + P   N    +V++     + PG ID   H  +PG T      S    
Sbjct: 27  DGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCIDDQVHFREPGLTHKATIASESRA 86
Query: 68  XXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEA 127
                     D P  + P+T     L+ +   A+   + + GF+ G   +N      ++ 
Sbjct: 87  AVAGGVTSFXDXPNTNPPTTXWERLLEKRQIGADT-AWANYGFFFGGTNDNIDEIKRVDK 145
Query: 128 LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME---KGSERHV 184
            L   V GL  F+  S  N   + N   +++   +       +  H E E   + ++ H 
Sbjct: 146 HL---VPGLXLFLGSSTGNXL-VDNKETLEK---IFGECDLLIATHCEKEEIIRANKEHY 198
Query: 185 KLE-DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXX 243
           K +  + LD   +   +++    +  +A  E + +A+          A LHI+H      
Sbjct: 199 KAKYGNDLDIH-FHPLIRSEEACYRSSA--EAVELAERX-------NARLHILHLSTEKE 248
Query: 244 XXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 303
                 +  T    IT E C H+L FS  +      R K  P I+  +++E L  A+ +G
Sbjct: 249 LSLFRNDIPTAQKRITSEVCVHHLWFSDTDYGRLGNRIKWNPAIKKESDREALRAAVRNG 308
Query: 304 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWS 363
            ID++++DH+P +   K   EG+ L+A  G   +Q  L        +   ++E++ S  +
Sbjct: 309 RIDIIATDHAPHLLREK---EGSCLQAASGGPLVQHSLLALLELCNQGIFSIEEIVSKTA 365
Query: 364 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVL 423
             PA L     +G I  G +ADLV+ +P +   +  D+ + +     S + G   S  V 
Sbjct: 366 HIPATLFAIEKRGYIRPGYYADLVLVDPSSPHTVSADNILSL--CGWSPFEGFTFSHSVA 423
Query: 424 ATISRGNLVYKEGNHA 439
            T   G L Y +G  A
Sbjct: 424 YTFVNGCLAYAKGRLA 439

>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From Saccharomyces Kluyveri Length = 559

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 183/480 (38%), Gaps = 91/480 (18%)
Query: 30  QVVDYGEAVIMPGLIDVHAHLDDPGR-------TEWEGFPSXXXXXXXXXXXXLIDMPLN 82
           +V+D   A I PG ID H H+D+P +       T      S                   
Sbjct: 44  EVIDAEGAFITPGGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSK 103
Query: 83  SDPSTISTETLKLKVDA-AEKRIYVDVGFWGGLVPENAYNASALEAL---LNA-----GV 133
             PS ++ E++KL VD  +E+ +Y D G    L      +  A E L   L A     GV
Sbjct: 104 KGPSALA-ESVKLDVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGV 162
Query: 134 LGLKSFMCPSG--INDFPMTNASHI--KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD 189
             +  FM   G  I+D+ + +A +   K G + +   +   +V   +E        LE+ 
Sbjct: 163 SSVXMFMTYPGLQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEA-------LEEQ 215
Query: 190 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXM 249
            L    Y  +  +RP   E  A    +T+A  T  D P    H+                
Sbjct: 216 GLTDAYY--HGVSRPSIVEGEATNRAITLA--TTMDTPILFVHV------SSPQAAEVIK 265
Query: 250 EAKTNGDSITVETCPHYL-------------------------AFSAEEIPDGDTRFK-- 282
           +A+T G  +  ETCP Y                          + S     + D RF   
Sbjct: 266 QAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGS 325
Query: 283 ---CAPPIRDAANKEKLWEALMDGHIDMLSSDH--------SPTVPELKLLD-----EGN 326
              C+PPIR    ++ +W+ + +G   ++ SDH        + T  + +  D      G 
Sbjct: 326 KYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGE 385
Query: 327 FLKAWGGISSLQFVLPVTWSYGRKYG--VTLEQLASWWSERPAKLAGQV-SKGAIAIG-N 382
           F     G+  +   +P+ + YG   G   ++ +L       PAK+ G    KG+I  G +
Sbjct: 386 FRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVS 445
Query: 383 HADLVVWEPEAEFELDNDHP-----VHMKHPS-ISAYLGRRLSGKVLATISRGNLVYKEG 436
            ADLV+W P+   +  N  P       M+H    + + G  +      TI +G +VYKEG
Sbjct: 446 DADLVIWYPDDSKKEYNSKPKLITNKLMEHNCDYTPFEGIEIKNWPRYTIVKGKIVYKEG 505

>pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Length = 484

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 101/242 (41%), Gaps = 17/242 (7%)
Query: 202 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVE 261
           +RP   E  A   ++T+A   RT  P     +++V+             AK  G  +  E
Sbjct: 220 SRPEELEAEATHRVITIAN--RTHCP-----IYLVNVSSISAGDVIA-AAKMQGKVVLAE 271
Query: 262 TCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTV 316
           T   +   +       D      +   PP+R D      L   L +  +++++SDH P  
Sbjct: 272 TTTAHATLTGLHYYHQDWSHAAAYVTVPPLRLDTNTSTYLMSLLANDTLNIVASDHRPFT 331
Query: 317 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-S 374
            + K + + +F K   G+S +Q  + V W  G   G   E +  +  S   AKL      
Sbjct: 332 TKQKAMGKEDFTKIPHGVSGVQDRMSVIWERGVVGGKMDENRFVAVTSSNAAKLLNLYPR 391
Query: 375 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434
           KG I  G  AD+VVW+PEA   +     V  +    + Y   R  G  L TISRG +VY+
Sbjct: 392 KGRIIPGADADVVVWDPEATKTISASTQV--QGGDFNLYENMRCHGVPLVTISRGRVVYE 449
Query: 435 EG 436
            G
Sbjct: 450 NG 451

>pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5 Length = 586

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 17/242 (7%)
Query: 202 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVE 261
           +RP   E  A   ++T+A   RT  P     +++V+             AK  G  +  E
Sbjct: 241 SRPEELEAEATHRVITIAN--RTHCP-----IYLVNVSSISAGDVIA-AAKMQGKVVLAE 292
Query: 262 TCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTV 316
           T   +   +       D      +   PP+R D      L   L +  +++++SDH P  
Sbjct: 293 TTTAHATLTGLHYYHQDWSHAAAYVTVPPLRLDTNTSTYLMSLLANDTLNIVASDHRPFT 352
Query: 317 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-S 374
            + K + + +F K   G+S +Q  + V W  G   G   E +  +  S   AKL      
Sbjct: 353 TKQKAMGKEDFTKIPHGVSGVQDRMSVIWERGVVGGKMDENRFVAVTSSNAAKLLNLYPR 412
Query: 375 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434
           KG I  G  AD+VVW+PEA   +       ++    + Y   R  G  L TISRG +VY+
Sbjct: 413 KGRIIPGADADVVVWDPEATKTISAS--TQVQGGDFNLYENMRCHGVPLVTISRGRVVYE 470
Query: 435 EG 436
            G
Sbjct: 471 NG 472

>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From Dictyostelium Discoideum Length = 521

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 99/448 (22%), Positives = 174/448 (38%), Gaps = 51/448 (11%)
Query: 10  EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSXXXX 67
           E  II  +S+   P+     +VVD  + +++PG ID H H   P  G    + F      
Sbjct: 31  ENGIIKEISKNIEPKEGI--KVVDATDKLLLPGGIDTHTHFQLPFMGTVSVDDFDIGTQA 88
Query: 68  XXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEK-----RIYVDVGFWGGLVPENAYNA 122
                   +ID  + +   ++     + K  A EK      ++V + +W   V      +
Sbjct: 89  AVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQV------S 142
Query: 123 SALEALLNAGVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKR---PLLVHAE--- 175
             +E L+     G+ SF C     N F +T+    +E   +  R K       VHAE   
Sbjct: 143 REMEILVKE--RGVNSFXCFMAYKNSFMVTD----QEMYHIFKRCKELGAIAQVHAENGD 196
Query: 176 -MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLH 234
            + +G ++ +++     +    S     RP + E  A    + +A    T        ++
Sbjct: 197 MVFEGQKKMLEMGITGPEGHELS-----RPEALEAEATNRAIVIADSVCTP-------VY 244
Query: 235 IVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR----FKCAPPIR-D 289
           IVH              K  G  +  E     L      + + D R    F   PPIR D
Sbjct: 245 IVHVQSIGAADVICKHRK-EGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPD 303
Query: 290 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 349
              K  L + L  G +D + +D+     + K + + +F K   G++ ++  + + W  G 
Sbjct: 304 PRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGV 363
Query: 350 KYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKH 407
             G +T  Q     S   A++      KG I +G   D+V+W+P     +  D   H   
Sbjct: 364 NTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKD--THHHA 421
Query: 408 PSISAYLGRRLSGKVLATISRGNLVYKE 435
              + + G +++G  + TI  GN+V+ +
Sbjct: 422 VDFNIFEGIKVTGIAVTTIVAGNIVWSD 449

>pdb|2VR2|A Chain A, Human Dihydropyrimidinase Length = 541

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 163/426 (38%), Gaps = 43/426 (10%)
Query: 30  QVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPST 87
           +V+D    +++PG ID H H+  P  G    + F              +ID  +     +
Sbjct: 72  RVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGS 131
Query: 88  I--STETLKLKVD---AAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMC 141
           +  + ET +   D     +  ++V V +W   V E       ++ L+ + GV   K FM 
Sbjct: 132 LIEAFETWRSWADPKVCCDYSLHVAVTWWSDQVKEE------MKILVQDKGVNSFKMFM- 184
Query: 142 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYS 197
                D  M     + E  S          VHAE    + +G+++ +      L      
Sbjct: 185 --AYKDLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKML-----ALGITGPE 237
Query: 198 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDS 257
            +   RP + E  A    +T+A        A    L+IVH            +A+ +G  
Sbjct: 238 GHELCRPEAVEAEATLRAITIAS-------AVNCPLYIVHVMSKSAAKVIA-DARRDGKV 289
Query: 258 ITVETCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDH 312
           +  E     L        + +          PP+R D +  + L   L +  +    +D+
Sbjct: 290 VYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDN 349
Query: 313 SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAG 371
                  K L + +F K   G++ ++  + V W  G   G   E +  +  S   AK+  
Sbjct: 350 CTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFN 409
Query: 372 QV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 430
               KG IA+G+ AD+V+W+P+    +      H +  + + + G    G  L TISRG 
Sbjct: 410 LYPRKGRIAVGSDADIVIWDPKGTRTISAK--THHQAVNFNIFEGMVCHGVPLVTISRGK 467
Query: 431 LVYKEG 436
           +VY+ G
Sbjct: 468 VVYEAG 473

>pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45 Length = 518

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 155/416 (37%), Gaps = 37/416 (8%)
Query: 38  VIMPGLIDVHAHLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKL 95
           +++PG IDV+ +L  P  G T  + F              +ID  +    S++ T   K 
Sbjct: 57  MVIPGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKW 116
Query: 96  KVDAAEKR-----IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPM 150
              A  K      ++VD+  W   V E       LE L+     G+ SF       D   
Sbjct: 117 HEAADTKSCCDYSLHVDITSWYDGVREE------LEVLVQDK--GVNSFQVYMAYKDLYQ 168
Query: 151 TNASHIKEGLSVLARYKRPLLVHAEMEK--GSERHVKLEDDTLDTRSYSTYLKTRPPSWE 208
            + S + E  + L      +LVHAE       E+   LE        ++    +RP   E
Sbjct: 169 MSDSQLYEAFTFLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHAL---SRPEELE 225
Query: 209 EAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLA 268
             A+   + +A   R + P     ++I             + A+  G  +  E     L 
Sbjct: 226 AEAVFRAIAIAG--RINCP-----VYITKVMSKSAADIIAL-ARKKGPLVFGEPIAASLG 277
Query: 269 FSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLD 323
                    +      F  +PP+  D    + L   L  G + +  S H P     K + 
Sbjct: 278 TDGTHYWSKNWAKAAAFVTSPPLSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVG 337
Query: 324 EGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-SKGAIAIG 381
           + NF     G++ ++  + V W      G   E Q  +  S   AK+      KG IA+G
Sbjct: 338 KDNFTLIPEGVNGIEERMTVVWDKAVATGKMDENQFVAVTSTNAAKIFNLYPRKGRIAVG 397
Query: 382 NHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 437
           + AD+V+W+P+    +      H      + + G    G  L  IS+G +V+++GN
Sbjct: 398 SDADVVIWDPDKMKTITAKS--HKSTVEYNIFEGMECHGSPLVVISQGKIVFEDGN 451

>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2 Length = 501

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 158/417 (37%), Gaps = 39/417 (9%)
Query: 38  VIMPGLIDVHAHLD--DPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKL 95
           +++PG IDVH      D G T  + F              +ID  +  +P T        
Sbjct: 75  MVIPGGIDVHTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVV-PEPGTSLLAAFDQ 133
Query: 96  KVDAAEKR------IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-F 148
             + A+ +      ++VD+  W   + E       +EAL+     G+ SF+      D F
Sbjct: 134 WREWADSKSCCDYSLHVDISEWHKGIQEE------MEALVKDH--GVNSFLVYMAFKDRF 185
Query: 149 PMTNASHIKEGLSVLARYKRPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 207
            +T+   I E LSV+        VHAE  +  +E   ++ D  L       ++ +RP   
Sbjct: 186 QLTDC-QIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRILD--LGITGPEGHVLSRPEEV 242
Query: 208 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYL 267
           E  A+   +T+A   +T+ P     L+I              +A+  G  +  E     L
Sbjct: 243 EAEAVNRAITIAN--QTNCP-----LYITKVMSKSSAEVIA-QARKKGTVVYGEPITASL 294
Query: 268 AFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLL 322
                     +      F  +PP+  D    + L   L  G + +  S H       K +
Sbjct: 295 GTDGSHYWSKNWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCTFNTAQKAV 354
Query: 323 DEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-SKGAIAI 380
            + NF     G +  +  + V W      G   E Q  +  S   AK+      KG IA+
Sbjct: 355 GKDNFTLIPEGTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAV 414
Query: 381 GNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 437
           G+ ADLV+W+P++   +      H      + + G    G  L  IS+G +V ++G 
Sbjct: 415 GSDADLVIWDPDSVKTI--SAKTHNSSLEYNIFEGMECRGSPLVVISQGKIVLEDGT 469

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	450
3hm7_A	448	Allantoinase; metallo-dependent hydrolase, protein	1e-173
3e74_A	473	Allantoinase; (beta/alpha)8-barrel domain, small b	1e-170
1gkr_A	458	Hydantoinase, non-ATP dependent L-selective hydant	1e-147
1nfg_A	457	D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2	1e-134
3sfw_A	461	Dihydropyrimidinase; hydrolase, zinc binding; HET:	1e-129
2gwn_A	452	Dihydroorotase; zinc-binding prote structural geno	1e-128
1gkp_A	458	Hydantoinase; hydrolase, dihydropyrimidinase, cycl	1e-126
2vr2_A	541	Dihydropyrimidinase; hydantoinase, metal-binding,	1e-126
3dc8_A	490	Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K	1e-124
2vm8_A	501	Dihydropyrimidinase-related protein 2; neurogenesi	1e-122
2ftw_A	521	Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba	1e-121
2fty_A	559	Dihydropyrimidinase; alpha/beta barrel, beta-sandw	1e-107
3gri_A	424	Dihydroorotase, dhoase; hydrolase, IDP00795, metal	3e-75
1xrt_A	467	Dihydroorotase, dhoase; amidohydrolase, metalloenz	5e-75
3mpg_A	428	Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus	7e-75
2z00_A	426	Dihydroorotase; zinc binding protein, hydrolase, m	2e-71
1onw_A	390	Isoaspartyl dipeptidase; amidohydrolase, hydrolase	7e-27
2vun_A	386	Enamidase; nicotinate degradation, binuclear metal	1e-22
4ubp_C	570	Protein (urease (chain C)); bacillus pasteurii, ni	2e-20
2ics_A	379	Adenine deaminase; TIM barrel, binuclear zinc, ade	9e-20
1e9y_B	569	Urease subunit beta; hydrolase, dodecamer; HET: KC	3e-17
1ejx_C	567	Urease alpha subunit; alpha-beta barrel, nickel me	6e-13
2ogj_A	417	Dihydroorotase; TIM barrel, binuclear zinc, imidaz	8e-13
2z26_A	347	Dihydroorotase, dhoase; TIM barrel, hydrolase; HET	6e-10
3ooq_A	396	Amidohydrolase; structural genomics, protein struc	4e-08
1yrr_A	382	N-acetylglucosamine-6-phosphate deacetylase; (beta	1e-07
2r8c_A	426	Putative amidohydrolase; unknown source, sargasso	2e-07
3feq_A	423	Putative amidohydrolase; unknown source, sargasso	5e-07
1rk6_A	496	D-aminoacylase; TIM barrel, beta barrel, insertion	7e-07
2ood_A	475	BLR3880 protein; PSI-II, PSI-2, guanine deaminase,	1e-06
3be7_A	408	Zn-dependent arginine carboxypeptidase; unknown so	2e-06
3gip_A	480	N-acyl-D-glutamate deacylase; amidohydrolase famil	2e-06
4dzh_A	472	Amidohydrolase; adenosine deaminase, nysgrc, struc	2e-06
3gnh_A	403	L-lysine, L-arginine carboxypeptidase CC2672; N-me	2e-06
2qs8_A	418	XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p	2e-06
3ggm_A	81	Uncharacterized protein BT9727_2919; bacillus cere	3e-06
3iv8_A	381	N-acetylglucosamine-6-phosphate deacetylase; IDP01	4e-06
2q09_A	416	Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio	7e-06
2p9b_A	458	Possible prolidase; protein structure initiative I	8e-06
2imr_A	420	Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2,	8e-06
3nqb_A	608	Adenine deaminase 2; PSI-II, structural genomics,	1e-05
2bb0_A	421	Imidazolonepropionase; TIM barrel, hydrolase; 2.00	1e-05
2i9u_A	439	Cytosine/guanine deaminase related protein; protei	2e-05
2puz_A	419	Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino	3e-05
3v7p_A	427	Amidohydrolase family protein; iron binding site,	3e-05
4f0r_A	447	5-methylthioadenosine/S-adenosylhomocysteine DEAM;	3e-05
2qt3_A	403	N-isopropylammelide isopropyl amidohydrolase; N-is	4e-05
4dyk_A	451	Amidohydrolase; adenosine deaminase, nysgrc, struc	4e-05
2vhl_A	396	N-acetylglucosamine-6-phosphate deacetylase; N- ac	4e-05
3lnp_A	468	Amidohydrolase family protein OLEI01672_1_465; TIM	2e-04
3ls9_A	456	Triazine hydrolase; atrazine chlorohydrolase TRZN;	2e-04
3icj_A	534	Uncharacterized metal-dependent hydrolase; structu	3e-04
1ra0_A	430	Cytosine deaminase; alpha-beta barrel, hexamer, co	3e-04
3h4u_A	479	Amidohydrolase; signature of Zn ligands, structura	3e-04
1p1m_A	406	Hypothetical protein TM0936; putative metal depend	4e-04

>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} Length = 448

 Score =  492 bits (1270), Expect = e-173
 Identities = 157/439 (35%), Positives = 227/439 (51%), Gaps = 26/439 (5%)

Query: 3   KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 62
           +  V I+ G + +I        +      +D     + PG++DVH H ++PGRTEWEGF 
Sbjct: 23  RADVAIRNGIVSAITEPGSISSDDG--PAIDGTGLHLFPGMVDVHVHFNEPGRTEWEGFA 80

Query: 63  SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 122
           SG+K+ AAGG+TT  DMPLNS+P TI+ E L  K   A ++  VD  FWGGLVP    N 
Sbjct: 81  SGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVPG---NI 137

Query: 123 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME---KG 179
             L+ L + GV+G K+FM   G +DF  ++   + +G+  +A     L VHAE       
Sbjct: 138 DHLQDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAALGSILAVHAESNEMVNA 197

Query: 180 SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 239
                  E       +   Y + RP   E  A+  +L  A+ T          +HI H+S
Sbjct: 198 LTTIAIEEQRL----TVKDYSEARPIVSELEAVERILRFAQLT-------CCPIHICHVS 246

Query: 240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEA 299
                L  + +AK  G +++VETCPHYL FS +E  +     KCAPP+R+    E LW+ 
Sbjct: 247 SR-KVLKRIKQAKGEGVNVSVETCPHYLLFSLDEFAEIGYLAKCAPPLRERQEVEDLWDG 305

Query: 300 LMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQL 358
           LM G ID++SSDHSP++P++K        + WGGI+  Q  L V  + G  K  + L Q+
Sbjct: 306 LMAGEIDLISSDHSPSLPQMK--TGKTIFEVWGGIAGCQNTLAVMLTEGYHKRKMPLTQI 363

Query: 359 ASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR 417
               S  PAK  G    KG I +G  A   + +    + L+    ++ +HP IS Y+G+R
Sbjct: 364 VQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNESYTLNASD-LYYRHP-ISPYVGQR 421

Query: 418 LSGKVLATISRGNLVYKEG 436
             GKV  TI +G  VY++ 
Sbjct: 422 FRGKVKHTICQGKHVYQDH 440

>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} Length = 473

 Score =  484 bits (1249), Expect = e-170
 Identities = 155/448 (34%), Positives = 229/448 (51%), Gaps = 33/448 (7%)

Query: 3   KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 62
              + +K G I +I  +          +V+D    V+ PG++D H H+ +PGR+ WEG+ 
Sbjct: 40  VVDIAVKGGKIAAIGQDL-----GDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYE 94

Query: 63  SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 122
           +GT+AAA GGITT+I+MPLN  P+T+   +++LK DAA+ ++ +D    GGLV     N 
Sbjct: 95  TGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY---NI 151

Query: 123 SALEALLNAGVLGLKSFMCPSGI----NDFPMTNASHIKEGLSVLARYKRPLLVHAEME- 177
             L  L   GV+G K F+   G     NDF   N     +G   L    +P+LVH E   
Sbjct: 152 DRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENAL 211

Query: 178 --KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHI 235
                    K E       +   Y+ +RP   E  AIR +L +AK         G  LH+
Sbjct: 212 ICDELGEEAKREGRV----TAHDYVASRPVFTEVEAIRRVLYLAKVA-------GCRLHV 260

Query: 236 VHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEK 295
            H+S     ++ +  A+  G  IT E+CPHY     ++  +  T  KC+PPIRD  N++ 
Sbjct: 261 CHVSSP-EGVEEVTRARQEGQDITCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKG 319

Query: 296 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVT 354
           +WE L +G ID L SDHSP  PE+K    GN +KAWGGI+ LQ  + V +    +K G++
Sbjct: 320 MWEKLFNGEIDCLVSDHSPCPPEMK---AGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMS 376

Query: 355 LEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYL 414
           L       +   A + G   KG IA G  AD V  +P + + L ND  +  +H  +S Y+
Sbjct: 377 LPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDD-LEYRHK-VSPYV 434

Query: 415 GRRLSGKVLATISRGNLVYKEGNHAPAA 442
           GR +  ++  TI RG+++Y      P A
Sbjct: 435 GRTIGARITKTILRGDVIYDIEQGFPVA 462

>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 Length = 458

 Score =  426 bits (1098), Expect = e-147
 Identities = 123/449 (27%), Positives = 212/449 (47%), Gaps = 28/449 (6%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-EWEGFPSG 64
           + +K+G + +I ++      S+    +D G   +MPG++D H H+ D      +  F   
Sbjct: 22  ILVKDGKVAAISADTSDVEASR---TIDAGGKFVMPGVVDEHVHIIDMDLKNRYGRFELD 78

Query: 65  TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
           +++AA GGITT+I+MP  + P T + +    K   A +R+ VD   +GG VP N      
Sbjct: 79  SESAAVGGITTIIEMP-ITFPPTTTLDAFLEKKKQAGQRLKVDFALYGGGVPGNL---PE 134

Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME---KGSE 181
           +  + +AG +G KS M  S    F   +   + E    +A     ++VHAE E   +  +
Sbjct: 135 IRKMHDAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQ 194

Query: 182 RHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 241
           + +K           + Y  ++P   E  AI+  L + K+        G  L ++H+S+ 
Sbjct: 195 KQIKAAGGK----DMAAYEASQPVFQENEAIQRALLLQKEA-------GCRLIVLHVSNP 243

Query: 242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM 301
              ++L+ +A++ G  +  E+ P YL  + ++        K APP+R A    +LWE L 
Sbjct: 244 DG-VELIHQAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVRSAEMNIRLWEQLE 302

Query: 302 DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLAS 360
           +G ID L SDH     E K     +  KA  G   L+  LP+  + G   G ++LE+L  
Sbjct: 303 NGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVE 362

Query: 361 WWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS 419
              E+PAKL G    KG + +G+ ADL++ + + + ++D        H   S + G  ++
Sbjct: 363 VMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDTKVDASQ-FRSLHK-YSPFDGMPVT 420

Query: 420 GKVLATISRGNLVYKEGN-HAPAACGSPI 447
           G  + T+ RG +V ++G        G  +
Sbjct: 421 GAPVLTMVRGTVVAEKGEVLVEQGFGQFV 449

>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 Length = 457

 Score =  393 bits (1013), Expect = e-134
 Identities = 114/443 (25%), Positives = 189/443 (42%), Gaps = 35/443 (7%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG--RTEWEGFPS 63
           + IK+G I  I             + +D     + PG IDVH H++         + F +
Sbjct: 21  LGIKDGKITQIGGAL-----GPAERTIDAAGRYVFPGGIDVHTHVETVSFNTQSADTFAT 75

Query: 64  GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
            T AAA GG TT++D            E +      A  +  +D G+   ++        
Sbjct: 76  ATVAAACGGTTTIVDFCQQD-RGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTDSVIE 134

Query: 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEKG 179
            LE L + G+   K FM   G     M +   + + L    +    ++VHAE     +  
Sbjct: 135 ELEVLPDLGITSFKVFMAYRG---MNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYL 191

Query: 180 SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 239
            ++ V  E  T    +   +  +RPP  E  A    L +A+          A ++IVH++
Sbjct: 192 RDKFVA-EGKT----APIYHALSRPPRVEAEATARALALAEIV-------NAPIYIVHVT 239

Query: 240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD---TRFKCAPPIRDAANKEKL 296
               SL+ +M AK+ G     ETC HYL  + E++   D    ++   PP R   + + L
Sbjct: 240 -CEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKYVFTPPARAKKDHDVL 298

Query: 297 WEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL 355
           W AL +G  + +SSDH        K     +F     G   ++  L + +    +  ++L
Sbjct: 299 WNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQGVNEGRISL 358

Query: 356 EQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYL 414
            Q     + RPAK+ G    KG IA+G+ AD+V+W+PEAE  ++    +H      S+Y 
Sbjct: 359 TQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVIEQTA-MHNAMD-YSSYE 416

Query: 415 GRRLSGKVLATISRGNLVYKEGN 437
           G ++ G     + RG ++  EG+
Sbjct: 417 GHKVKGVPKTVLLRGKVIVDEGS 439

>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* Length = 461

 Score =  380 bits (978), Expect = e-129
 Identities = 118/445 (26%), Positives = 202/445 (45%), Gaps = 36/445 (8%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPS 63
           V I    +++I S+          +V+D     ++PG ID H HLD P  G    + F +
Sbjct: 21  VLIDGEKVVAIGSDLQAT----DAEVIDATGYYLLPGGIDPHTHLDMPFGGTVTSDNFFT 76

Query: 64  GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
           GTKAAA GG T+++D  L S         +    + A  +  +D GF   +   N +   
Sbjct: 77  GTKAAAFGGTTSIVDFCLTS-KGESLHSAIATWHEKARGKAVIDYGFHLMVSDANDHVLE 135

Query: 124 ALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEK 178
            LE+++N  G+  LK FM         M +   + + L         + VHAE    ++ 
Sbjct: 136 ELESVVNNEGITSLKVFMAYKN---VLMADDETLFKTLIRAKELGALVQVHAENGDVLDY 192

Query: 179 GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 238
            +++ +  E +T        +  TRPP  E  A    + +            A L++VH+
Sbjct: 193 LTKQALA-EGNT----DPIYHAYTRPPEAEGEATGRAIALTALA-------DAQLYVVHV 240

Query: 239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD---TRFKCAPPIRDAANKEK 295
           S  + ++  + EA+  G ++  ETCP YL      +   D    ++  +PP+R+  N++ 
Sbjct: 241 S-CADAVRRIAEAREKGWNVYGETCPQYLVLDITALEKPDFEGAKYVWSPPLREKWNQDV 299

Query: 296 LWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGV 353
           LW AL +G +  + SDH P      K L   +F K   G   ++  + + +S G RK  +
Sbjct: 300 LWSALKNGILQTVGSDHCPFNFSGQKELGRRDFTKIPNGGPIIEDRMTILFSEGVRKGKI 359

Query: 354 TLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISA 412
           +L Q     S + AKL G    KG IA+G+ AD+V+++P  +  +  +   HM     + 
Sbjct: 360 SLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFDPTVQRTISVET-HHMNVD-YNP 417

Query: 413 YLGRRLSGKVLATISRGNLVYKEGN 437
           + G ++ G V++ +SRG  V +   
Sbjct: 418 FEGMQVHGDVISVLSRGAFVVRNKQ 442

>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} Length = 452

 Score =  378 bits (973), Expect = e-128
 Identities = 111/437 (25%), Positives = 182/437 (41%), Gaps = 30/437 (6%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
           V I    I  I+  E    ++ +  +V++     + PG ID   H  +PG T      S 
Sbjct: 24  VMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCIDDQVHFREPGLTHKATIASE 83

Query: 65  TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA 124
           ++AA AGG+T+ +DMP N++P T   E L  K        + + GF+ G   +N      
Sbjct: 84  SRAAVAGGVTSFMDMP-NTNPPTTMWERLLEKRQIGADTAWANYGFFFGGTNDNI---DE 139

Query: 125 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEKGS 180
           ++ +    V GLK F+  S  N        + +    +       +  H E    +    
Sbjct: 140 IKRVDKHLVPGLKLFLGSSTGN----MLVDNKETLEKIFGECDLLIATHCEKEEIIRANK 195

Query: 181 ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 240
           E +     + LD   +      R       +  E + +A+          A LHI+HLS 
Sbjct: 196 EHYKAKYGNDLDIHFHPLI---RSEEACYRSSAEAVELAERM-------NARLHILHLST 245

Query: 241 ASSSLDLL-MEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEA 299
               L L   +  T    IT E C H+L FS  +      R K  P I+  +++E L  A
Sbjct: 246 EKE-LSLFRNDIPTAQKRITSEVCVHHLWFSDTDYGRLGNRIKWNPAIKKESDREALRAA 304

Query: 300 LMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 359
           + +G ID++++DH+P +   K   EG+ L+A  G   +Q  L        +   ++E++ 
Sbjct: 305 VRNGRIDIIATDHAPHLLREK---EGSCLQAASGGPLVQHSLLALLELCNQGIFSIEEIV 361

Query: 360 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS 419
           S  +  PA L     +G I  G +ADLV+ +P +   +  D+ +       S + G   S
Sbjct: 362 SKTAHIPATLFAIEKRGYIRPGYYADLVLVDPSSPHTVSADN-ILSLC-GWSPFEGFTFS 419

Query: 420 GKVLATISRGNLVYKEG 436
             V  T   G L Y +G
Sbjct: 420 HSVAYTFVNGCLAYAKG 436

>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* Length = 458

 Score =  371 bits (956), Expect = e-126
 Identities = 105/443 (23%), Positives = 184/443 (41%), Gaps = 33/443 (7%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW--EGFPS 63
           +  +   I  I    + P  ++   V+D     + PG ID H H+  P    +  +   +
Sbjct: 20  IYAEGETITRIGQNLEAPPGTE---VIDATGKYVFPGFIDPHVHIYLPFMATFAKDTHET 76

Query: 64  GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
           G+KAA  GG TT I+M      +  + E  +L    AE   Y D  F   +   +     
Sbjct: 77  GSKAALMGGTTTYIEMCCP-SRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEG 135

Query: 124 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEKG 179
            L  ++  G+   K F+       F   +   + + L +       +  H E    + + 
Sbjct: 136 QLREIVADGISSFKIFLSYKN---FFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRL 192

Query: 180 SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 239
            ++ +  E  T        +  +RP + E        T  + T       GA  ++VHLS
Sbjct: 193 QQKLLS-EGKT----GPEWHEPSRPEAVEAEGTARFATFLETT-------GATGYVVHLS 240

Query: 240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT---RFKCAPPIRDAANKEKL 296
               +LD  M AK  G  I +E+   +          G     ++  +PP+RD  N++ L
Sbjct: 241 -CKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVL 299

Query: 297 WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTL 355
           W+AL  G ID + +DH P   E KLL +  F     GI +++  + + ++YG  +  + +
Sbjct: 300 WDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDI 359

Query: 356 EQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYL 414
            +     S + AKL G    KG IA+G+ ADLVV++P+    +      H+ +   + + 
Sbjct: 360 HRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYDPQYRGTISVKT-QHVNND-YNGFE 417

Query: 415 GRRLSGKVLATISRGNLVYKEGN 437
           G  + G+      RG +  ++G 
Sbjct: 418 GFEIDGRPSVVTVRGKVAVRDGQ 440

>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} Length = 541

 Score =  374 bits (963), Expect = e-126
 Identities = 100/443 (22%), Positives = 176/443 (39%), Gaps = 26/443 (5%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFP 62
           V +++G + ++  +   P  +  G +V+D    +++PG ID H H+  P  G    + F 
Sbjct: 47  VLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDFH 106

Query: 63  SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 122
            GTKAA +GG T +ID  +     ++  E  +     A+ ++  D      +   +    
Sbjct: 107 QGTKAALSGGTTMIIDFAIPQKGGSL-IEAFETWRSWADPKVCCDYSLHVAVTWWSDQVK 165

Query: 123 SALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 181
             ++ L+ + GV   K FM      D  M     + E  S          VHAE      
Sbjct: 166 EEMKILVQDKGVNSFKMFMAYK---DLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIA 222

Query: 182 RHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 241
              K       T     +   RP + E  A    +T+A             L+IVH+  +
Sbjct: 223 EGAKKMLALGIT-GPEGHELCRPEAVEAEATLRAITIASAV-------NCPLYIVHVM-S 273

Query: 242 SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKEKL 296
            S+  ++ +A+ +G  +  E     L        + +          PP+R D +  + L
Sbjct: 274 KSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFL 333

Query: 297 WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTL 355
              L +  +    +D+       K L + +F K   G++ ++  + V W  G   G +  
Sbjct: 334 MNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDE 393

Query: 356 EQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYL 414
            +  +  S   AK+      KG IA+G+ AD+V+W+P+    +      H      + + 
Sbjct: 394 NRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKGTRTISAKT-HHQAVN-FNIFE 451

Query: 415 GRRLSGKVLATISRGNLVYKEGN 437
           G    G  L TISRG +VY+ G 
Sbjct: 452 GMVCHGVPLVTISRGKVVYEAGV 474

>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} Length = 490

 Score =  369 bits (950), Expect = e-124
 Identities = 110/456 (24%), Positives = 188/456 (41%), Gaps = 40/456 (8%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPS 63
           V+++ G I+ I        N    + +D     +MPG ID H HL+ P  G    + F S
Sbjct: 21  VKVEGGRIVEIGP------NLSGAETLDATGCYVMPGGIDPHTHLEMPFMGTYSSDDFES 74

Query: 64  GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
           GT+AA AGG T ++D  L S P     E L +  + + +    D  F   +        +
Sbjct: 75  GTRAALAGGTTMVVDFALPS-PGQSLLEALTMWDNKSTRA-NCDYSFHMAITWWGEQVFN 132

Query: 124 ALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEK 178
            +E ++ + G+   K FM   G     M +   +       A      LVHAE    + +
Sbjct: 133 EMETIVKDKGINTFKHFMAYKGA---LMVDDDEMFSSFQRCAALGALPLVHAENGDVVAQ 189

Query: 179 GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 238
              + +  E ++        +  +RP   E  A    + +A          G  ++IVH 
Sbjct: 190 LQAKLLA-EGNS----GPEAHAYSRPAEVEGEAANRAIMIADMA-------GCPVYIVHT 237

Query: 239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFKCAPPIRDAANKE 294
           S    + + +  A+  G  +  E    +L     E  D D     R   +PP R+  +++
Sbjct: 238 S-CEQAHEAIRRARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRVMSPPFRNKLHQD 296

Query: 295 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-V 353
            LW  L  G + ++++DH     E K    G+F +   G   L+  +P+ W+YG   G +
Sbjct: 297 SLWAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGLEDRMPMLWTYGVATGRI 356

Query: 354 TLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISA 412
           T+ +  +  S   AK+      KGAI +G  ADLVVW+P+    +             + 
Sbjct: 357 TMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRSKTISAKT-QQSAID-YNV 414

Query: 413 YLGRRLSGKVLATISRGNLVYKEGN-HAPAACGSPI 447
           + G+ ++G    T++RG +  +EG        G  +
Sbjct: 415 FEGKTVTGLPRFTLTRGVVSIEEGTVKTQEGHGEFV 450

>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A Length = 501

 Score =  364 bits (936), Expect = e-122
 Identities = 102/446 (22%), Positives = 172/446 (38%), Gaps = 36/446 (8%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD--DPGRTEWEGFPS 63
           + +++G I  I      P   K    ++    +++PG IDVH      D G T  + F  
Sbjct: 46  IYMEDGLIKQIGENLIVPGGVK---TIEAHSRMVIPGGIDVHTRFQMPDQGMTSADDFFQ 102

Query: 64  GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
           GTKAA AGG T +ID  +  +P T          + A+ +   D      +   +     
Sbjct: 103 GTKAALAGGTTMIIDHVVP-EPGTSLLAAFDQWREWADSKSCCDYSLHVDISEWHKGIQE 161

Query: 124 ALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEK 178
            +EAL+ + GV     +M      D        I E LSV+        VHAE    + +
Sbjct: 162 EMEALVKDHGVNSFLVYMAFK---DRFQLTDCQIYEVLSVIRDIGAIAQVHAENGDIIAE 218

Query: 179 GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 238
             +R + L            ++ +RP   E  A+   +T+A  T          L+I  +
Sbjct: 219 EQQRILDLGIT-----GPEGHVLSRPEEVEAEAVNRAITIANQT-------NCPLYITKV 266

Query: 239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANK 293
             + SS +++ +A+  G  +  E     L          +      F  +PP+  D    
Sbjct: 267 M-SKSSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPTTP 325

Query: 294 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG- 352
           + L   L  G + +  S H       K + + NF     G +  +  + V W      G 
Sbjct: 326 DFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTLIPEGTNGTEERMSVIWDKAVVTGK 385

Query: 353 VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSIS 411
           +   Q  +  S   AK+      KG IA+G+ ADLV+W+P++   +      +      +
Sbjct: 386 MDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTISAKT-HNSSLE-YN 443

Query: 412 AYLGRRLSGKVLATISRGNLVYKEGN 437
            + G    G  L  IS+G +V ++G 
Sbjct: 444 IFEGMECRGSPLVVISQGKIVLEDGT 469

>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 Length = 521

 Score =  362 bits (930), Expect = e-121
 Identities = 95/445 (21%), Positives = 170/445 (38%), Gaps = 34/445 (7%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPS 63
           V ++ G I  I    +     +  +VVD  + +++PG ID H H   P  G    + F  
Sbjct: 28  VLVENGIIKEISKNIEPK---EGIKVVDATDKLLLPGGIDTHTHFQLPFMGTVSVDDFDI 84

Query: 64  GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 123
           GT+AA AGG T +ID  +         E        A++++  D      +   +   + 
Sbjct: 85  GTQAAVAGGTTFIIDFVIP-TRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQVSR 143

Query: 124 ALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE---MEKG 179
            +E L+   GV   K FM         M     +               VHAE   M   
Sbjct: 144 EMEILVKERGVNSFKCFMAYKNSF---MVTDQEMYHIFKRCKELGAIAQVHAENGDMVFE 200

Query: 180 SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 239
            ++ +     T        +  +RP + E  A    + +A             ++IVH+ 
Sbjct: 201 GQKKMLEMGIT----GPEGHELSRPEALEAEATNRAIVIADSV-------CTPVYIVHVQ 249

Query: 240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKE 294
            +  + D++ + +  G  +  E     L      + + D      F   PPIR D   K 
Sbjct: 250 -SIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPRTKG 308

Query: 295 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGV 353
            L + L  G +D + +D+     + K + + +F K   G++ ++  + + W  G     +
Sbjct: 309 VLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTGKL 368

Query: 354 TLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISA 412
           T  Q     S   A++      KG I +G   D+V+W+P     +  D   H      + 
Sbjct: 369 TWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKDT-HHHAVD-FNI 426

Query: 413 YLGRRLSGKVLATISRGNLVYKEGN 437
           + G +++G  + TI  GN+V+ +  
Sbjct: 427 FEGIKVTGIAVTTIVAGNIVWSDNK 451

>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* Length = 559

 Score =  327 bits (839), Expect = e-107
 Identities = 108/516 (20%), Positives = 186/516 (36%), Gaps = 95/516 (18%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEG---FP 62
           + +  G +  I +  D    S+   V+D   A I PG ID H H+D+P +   +      
Sbjct: 23  IAVNNGKVQLIAASIDPSLGSE---VIDAEGAFITPGGIDAHVHVDEPLKLLGDVVDTME 79

Query: 63  SGTKAAAAGGITTLIDMPLN----SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN 118
             T++A AGG TT++           PS ++        + +E+ +Y D G    L    
Sbjct: 80  HATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLILFQIE 139

Query: 119 AYNASALE--------ALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 170
             +  A E        A  + GV  +K FM   G+      +   I   +    +     
Sbjct: 140 KPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGL----QISDYDIMSAMYATRKNGFTT 195

Query: 171 LVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 226
           ++HAE    ++   E   +             +  +RP   E  A    +T+A       
Sbjct: 196 MLHAENGDMVKWMIEALEE-----QGLTDAYYHGVSRPSIVEGEATNRAITLATTM---- 246

Query: 227 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE-------------- 272
                 +  VH+S +  + +++ +A+T G  +  ETCP Y   S                
Sbjct: 247 ---DTPILFVHVS-SPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYG 302

Query: 273 ----------------EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV 316
                           +     +++ C+PPIR    ++ +W+ + +G   ++ SDH    
Sbjct: 303 VGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYN 362

Query: 317 PELK-------------LLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG--VTLEQLASW 361
              K                 G F     G+  +   +P+ + YG   G   ++ +L   
Sbjct: 363 YYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEI 422

Query: 362 WSERPAKLAG-QVSKGAIAIGN-HADLVVWEPEAEFELDNDHPV-------HMKHPSISA 412
               PAK+ G    KG+I  G   ADLV+W P+   +  N  P               + 
Sbjct: 423 QCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITNKLMEHNCD-YTP 481

Query: 413 YLGRRLSGKVLATISRGNLVYKEGN-HAPAACGSPI 447
           + G  +      TI +G +VYKEG      A G  +
Sbjct: 482 FEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYL 517

>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} Length = 424

 Score =  240 bits (616), Expect = 3e-75
 Identities = 107/453 (23%), Positives = 189/453 (41%), Gaps = 71/453 (15%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           + I    I  I    +         ++D     + PG +DVH HL +PG    E   +GT
Sbjct: 20  ILIDGKVIKQIAPAIEPSNGV---DIIDAKGHFVSPGFVDVHVHLREPGGEYKETIETGT 76

Query: 66  KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV--------GFWGGLVPE 117
           KAAA GG TT+  MP N+ P   S E  +      +    V V           G  + +
Sbjct: 77  KAAARGGFTTVCPMP-NTRPVPDSVEHFEALQKLIDDNAQVRVLPYASITTRQLGKELVD 135

Query: 118 NAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEM 176
                    AL+  G             +D   +  AS + EG+   A+  + ++ H E 
Sbjct: 136 -------FPALVKEGAFAFT--------DDGVGVQTASMMYEGMIEAAKVNKAIVAHCE- 179

Query: 177 EKGSERHVKLEDDTL--------DTRSYSTYLKTRPPSWEEAAI-RELLTVAKDTRTDGP 227
                      D++L          RS    +   P   E   I R++L +A+       
Sbjct: 180 -----------DNSLIYGGAMHEGKRSKELGIPGIPNICESVQIARDVL-LAEAA----- 222

Query: 228 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 287
             G H H+ H+S   S + ++ +AK  G  +T E  PH+L  + ++IP  +  +K  PP+
Sbjct: 223 --GCHYHVCHVSTKES-VRVIRDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKMNPPL 279

Query: 288 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 347
           R   ++E L E L+DG ID +++DH+P   + K        KA  GI   +   P+ +++
Sbjct: 280 RSTEDREALLEGLLDGTIDCIATDHAPHARDEKAQP---MEKAPFGIVGSETAFPLLYTH 336

Query: 348 -GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMK 406
             +    TL+QL  + + +P +    +  G +    +ADL + + ++E E+  +      
Sbjct: 337 FVKNGDWTLQQLVDYLTIKPCETFN-LEYGTLKENGYADLTIIDLDSEQEIKGE-----D 390

Query: 407 HPSISA---YLGRRLSGKVLATISRGNLVYKEG 436
             S +    ++G ++ G  + T+  G + ++  
Sbjct: 391 FLSKADNTPFIGYKVYGNPILTMVEGEVKFEGD 423

>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* Length = 467

 Score =  241 bits (618), Expect = 5e-75
 Identities = 120/450 (26%), Positives = 203/450 (45%), Gaps = 71/450 (15%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           + ++ G I  I             +++D    ++ PG ID+H HL DPG+T  E   SG+
Sbjct: 69  ILVENGKIKKIDKNIL----VPEAEIIDAKGLIVCPGFIDIHVHLRDPGQTYKEDIESGS 124

Query: 66  KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV--------GFWGGLVPE 117
           + A AGG TT++ MP N++P   +T  +   +  ++      V        G  G  + +
Sbjct: 125 RCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRKGKEIAD 183

Query: 118 NAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEM 176
                    +L  AG +           +D  P+ ++S +++ L + ++   P++ H E 
Sbjct: 184 -------FYSLKEAGCVAFT--------DDGSPVMDSSVMRKALELASQLGVPIMDHCE- 227

Query: 177 EKGSERHVKLEDDTL-------DTRSYSTYLKTRPPSWEEAAI-RELLTVAKDTRTDGPA 228
                      DD L          S    L +R P  EE  I R+ + +A+ T      
Sbjct: 228 -----------DDKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDGI-LAQRT------ 269

Query: 229 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIR 288
            G H+HI H+S   S L+++   K  G  IT E  P++L F+  E+ +     +  PP+R
Sbjct: 270 -GGHVHIQHVSTKLS-LEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGANARVNPPLR 327

Query: 289 DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 348
              ++  L E +  G ID  ++DH+P     K L       A  GI  LQ  LP      
Sbjct: 328 KKEDRLALIEGVKRGIIDCFATDHAPHQTFEKEL----VEFAMPGIIGLQTALPSALELY 383

Query: 349 RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHP 408
           RK  ++L++L   ++  PA++ G V  G + +G+ AD+ +++P  E+ L+ +      + 
Sbjct: 384 RKGIISLKKLIEMFTINPARIIG-VDLGTLKLGSPADITIFDPNKEWILNEE-----TNL 437

Query: 409 SISA---YLGRRLSGKVLATISRGNLVYKE 435
           S S      G+ L GKV+ TI  G +VYK+
Sbjct: 438 SKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 467

>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} Length = 428

 Score =  240 bits (614), Expect = 7e-75
 Identities = 115/454 (25%), Positives = 195/454 (42%), Gaps = 72/454 (15%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           + +++G I  +         +   +V+D    +I PGL+DVH HL +PG    E   +GT
Sbjct: 22  LLVQDGKIAKVAENIT----ADNAEVIDVNGKLIAPGLVDVHVHLREPGGEHKETIETGT 77

Query: 66  KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV--------GFWGGLVPE 117
            AAA GG TT+  MP N+ P     E ++   +  +++ +V+V           G  + +
Sbjct: 78  LAAAKGGFTTICAMP-NTRPVPDCREHMEDLQNRIKEKAHVNVLPYGAITVRQAGSEMTD 136

Query: 118 NAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEM 176
                   E L   G             +D   + +AS +   +   A+    ++ H E 
Sbjct: 137 -------FETLKELGAFAFT--------DDGVGVQDASMMLAAMKRAAKLNMAVVAHCE- 180

Query: 177 EKGSERHVKLEDDTL--------DTRSYSTYLKTRPPSWEEAAI-RELLTVAKDTRTDGP 227
                      ++TL           S    L   P   E   I R++L +A+       
Sbjct: 181 -----------ENTLINKGCVHEGKFSEKHGLNGIPSVCESVHIARDIL-LAEAA----- 223

Query: 228 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 287
               H H+ H+S   S + ++ +AK  G  +T E  PH+L    ++IP  D  FK  PP+
Sbjct: 224 --DCHYHVCHVSTKGS-VRVIRDAKRAGIKVTAEVTPHHLVLCEDDIPSADPNFKMNPPL 280

Query: 288 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 347
           R   + E L E L+DG IDM+++DH+P   E K        +A  GI+  +   P+ ++ 
Sbjct: 281 RGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKAQG---IERAPFGITGFETAFPLLYTN 337

Query: 348 -GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMK 406
             +K  +TLEQL  + +E+PA   G +  G +  G  AD+ + + E E E+D        
Sbjct: 338 LVKKGIITLEQLIQFLTEKPADTFG-LEAGRLKEGRTADITIIDLEQEEEIDPT-----T 391

Query: 407 HPSISA---YLGRRLSGKVLATISRGNLVYKEGN 437
             S      + G +  G  + TI  G + +++ +
Sbjct: 392 FLSKGKNTPFAGWKCQGWPVMTIVGGKIAWQKES 425

>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} Length = 426

 Score =  230 bits (590), Expect = 2e-71
 Identities = 124/453 (27%), Positives = 188/453 (41%), Gaps = 70/453 (15%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           V I EG I+S+   E         QVVD     + PG +D+HAHL +PG    E   SG 
Sbjct: 21  VLIGEGRILSLEGGEA-------KQVVDGTGCFLAPGFLDLHAHLREPGEEVKEDLFSGL 73

Query: 66  KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV--------GFWGGLVPE 117
            AA  GG T L+ MP N+ P   + E ++   + A+      +           G  +  
Sbjct: 74  LAAVRGGYTDLVSMP-NTKPPVDTPEAVRALKEKAKALGLARLHPAAALTEKQEGKTLTP 132

Query: 118 NAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEM 176
                     L  AG + L         +D     +A  +  GL + A    P+ VHAE 
Sbjct: 133 -------AGLLREAGAVLLT--------DDGRTNEDAGVLAAGLLMAAPLGLPVAVHAE- 176

Query: 177 EKGSERHVKLEDDTLDTR------SYSTY--LKTRPPSWEEAAI-RELLTVAKDTRTDGP 227
                      D  L           +    L   PP  E A I R+L  +    R    
Sbjct: 177 -----------DAGLRRNGVMNDGPLADLLGLPGNPPEAEAARIARDLEVLRYALRR--S 223

Query: 228 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 287
                LH+ HLS     L+L+ EAK  G  +T E  PH+L  + E +   D  FK APP+
Sbjct: 224 PATPRLHVQHLSTKRG-LELVREAKRAGLPVTAEATPHHLTLTEEALRTFDPLFKVAPPL 282

Query: 288 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 347
           R   ++E L E L+DG +D +++DH+P     K  D    L+A  GI SL+   P+ ++ 
Sbjct: 283 RGEEDREALLEGLLDGTLDAIATDHAPHTLAEKEKD---LLRAPFGIPSLEVAFPLLYTE 339

Query: 348 -GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMK 406
              K G  L++L   +++ P ++ G +    +  G  A LV+  P+ E  +D        
Sbjct: 340 LHLKRGFPLQRLVELFTDGPRRVLG-LPPLHLEEGAEASLVLLSPK-ERPVDPS-----A 392

Query: 407 HPSISA---YLGRRLSGKVLATISRGNLVYKEG 436
             S +    + G  L G  + T+  G +V++  
Sbjct: 393 FASKARYSPWAGWVLGGWPVLTLVAGRIVHEAL 425

>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* Length = 390

 Score =  110 bits (277), Expect = 7e-27
 Identities = 60/439 (13%), Positives = 124/439 (28%), Gaps = 87/439 (19%)

Query: 3   KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 62
              V +  G II++ S            VVD    ++ PG ID H HL   G        
Sbjct: 25  ICDVLVANGKIIAVASNIPSD-IVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGPTTR 83

Query: 63  SGTKAAAA---GGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 119
           +   A +     G+T+++ +   +D  +   E+L  K  A  +         G     + 
Sbjct: 84  TPEVALSRLTEAGVTSVVGLL-GTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSR 142

Query: 120 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG 179
               ++E  +      +   +          + A  +    ++ A  +   L+     K 
Sbjct: 143 TITGSVEKDVAI----IDRVIGVKCAISDHRSAAPDVYHLANMAAESRVGGLLG---GKP 195

Query: 180 SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 239
                 + D                    + A++ +  + ++         + L   H++
Sbjct: 196 GVTVFHMGD-------------------SKKALQPIYDLLENCDV----PISKLLPTHVN 232

Query: 240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA-ANKEKLWE 298
                 +  +E    G +I + +                       P+  A      +  
Sbjct: 233 RNVPLFEQALEFARKGGTIDITS-------------------SIDEPVAPAEGIARAVQA 273

Query: 299 ALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 358
            +    + + S  +           +        G++  + +L       + Y  ++   
Sbjct: 274 GIPLARVTLSSDGNGSQP-----FFDDEGNLTHIGVAGFETLLETVQVLVKDYDFSISDA 328

Query: 359 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL 418
               +   A       KG I  GN ADL+V  PE                          
Sbjct: 329 LRPLTSSVAGFLNLTGKGEILPGNDADLLVMTPELR------------------------ 364

Query: 419 SGKVLATISRGNLVYKEGN 437
              +    +RG L+ K+G 
Sbjct: 365 ---IEQVYARGKLMVKDGK 380

>2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} Length = 386

 Score = 98.5 bits (245), Expect = 1e-22
 Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 102/453 (22%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 64
            + +++G I +I  EE          ++D   + + PGL+D H H+        +     
Sbjct: 26  TIVVEDGLIAAIGGEELMKDAGDA-TIIDAAGSTVTPGLLDTHVHVSGGDYAPRQKTMDF 84

Query: 65  TKAAAAGGITTLIDMPLNSDPSTIS----TETLKLKVDAAEKRIYVDV-----GFWGGLV 115
             +A  GG+TT+I       P            K       K  Y           G ++
Sbjct: 85  ISSALHGGVTTMISAG---SPHFPGRPKDAAGTKALAITLSKSYYNARPAGVKVHGGAVI 141

Query: 116 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 175
            E          +   GV  +        I +            +    ++   + +H  
Sbjct: 142 LEKGLTEEDFIEMKKEGVWIVGEVG-LGTIKNPED-----AAPMVEWAHKHGFKVQMHTG 195

Query: 176 MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHI 235
                       DD + T+          P     +++E+  +  +T          + I
Sbjct: 196 GTSIPGSSTVTADDVIKTKPDVVSHINGGP--TAISVQEVDRIMDET-------DFAMEI 246

Query: 236 VHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEK 295
           V   +   +  +   A   G           + F  +                       
Sbjct: 247 VQCGNPKIADYVARRAAEKG-------QLGRVIFGNDAPSGTG----------------- 282

Query: 296 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL 355
               +  G +              ++                               +  
Sbjct: 283 ---LIPLGILRN----------MCQIA--------------------------SMSDIDP 303

Query: 356 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 415
           E      +     + G ++ G IA G  ADL++        +D       +    +   G
Sbjct: 304 EVAVCMATGNSTAVYG-LNTGVIAPGKEADLII--------MDTPLGSVAEDAMGAIAAG 354

Query: 416 RRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 448
                 +   +  G  V  +  + P A  +  +
Sbjct: 355 DIPG--ISVVLIDGEAVVTKSRNTPPAKRAAKI 385

>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* Length = 570

 Score = 92.8 bits (230), Expect = 2e-20
 Identities = 77/430 (17%), Positives = 133/430 (30%), Gaps = 77/430 (17%)

Query: 8   IKEGNIISIVSEE--DWPRNSKTGQVVDYGEAVI-------MPGLIDVHAHLDDPGRTEW 58
           +K+G I+ I      D         +V     VI         G ID H H  +      
Sbjct: 89  VKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFIN------ 142

Query: 59  EGFPSGTKAAAAGGITTLIDMPLNSDPSTIST------ETLKLKVDAAEKRIYVDVGFWG 112
              P     A A GITTL          + +T        ++  + + E  + ++VG  G
Sbjct: 143 ---PDQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTE-GLPINVGILG 198

Query: 113 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 172
                +  + + +   ++AG  GLK         D+  T A  I   L+V       + +
Sbjct: 199 KG---HGSSIAPIMEQIDAGAAGLKIHE------DWGATPA-SIDRSLTVADEADVQVAI 248

Query: 173 HAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 232
           H++    +       +DTL   +            E A       +           G  
Sbjct: 249 HSD----TLNEAGFLEDTLRAINGRV---IHSFHVEGAGGGHAPDIMAMA-------GHP 294

Query: 233 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE--EIPDGDTRFKCAPPIRDA 290
             +   ++           +    +   E     +        IP+ D  F  +    + 
Sbjct: 295 NVLPSSTNP---------TRPFTVNTIDEHLDMLMVCHHLKQNIPE-DVAFADSRIRPET 344

Query: 291 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK 350
              E +   L  G I M+S+D                L+ W     ++            
Sbjct: 345 IAAEDILHDL--GIISMMSTDALAMGR-----AGEMVLRTWQTADKMKKQRGPLAEEKNG 397

Query: 351 YG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPE-----AEFELDNDHPV 403
                L++  S ++  PA   G     G+I  G  ADLV+WEP+     A+  +      
Sbjct: 398 SDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFFGVKADRVIKGGIIA 457

Query: 404 H--MKHPSIS 411
           +  +  PS S
Sbjct: 458 YAQIGDPSAS 467

>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 Length = 379

 Score = 89.4 bits (221), Expect = 9e-20
 Identities = 73/446 (16%), Positives = 129/446 (28%), Gaps = 103/446 (23%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           + IKE  I ++ +            +       +  G ID H H  +     ++      
Sbjct: 22  IAIKEKKIAAVAATISGSAKE---TIHLEPGTYVSAGWIDDHVHCFEKMALYYD---YPD 75

Query: 66  KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 125
           +     G+TT+ID    +    I       +         V++  WG +  +   + S +
Sbjct: 76  EIGVKKGVTTVIDAG-TTGAENIHEFYDLAQQAKTNVFGLVNISKWGIVAQDELADLSKV 134

Query: 126 EALLNA--------GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 177
           +A L           V+G+K+ M  + I D  +T     K+        + PL+VH    
Sbjct: 135 QASLVKKAIQELPDFVVGIKARMSRTVIGDNGITPLELAKQI--QQENQEIPLMVHIG-- 190

Query: 178 KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH 237
                                   + PP  +E  I  L+   K         G    I+ 
Sbjct: 191 ------------------------SAPPHLDE--ILALM--EKGDVLTHCFNGKENGILD 222

Query: 238 LSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLW 297
            +      D   +A   G  +  +      +F+                           
Sbjct: 223 QATD-KIKDFAWQAYNKG--VVFDIGHGTDSFNFHVA----------------------E 257

Query: 298 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 357
            AL +G                   D     +  G +      L  T    R  G    +
Sbjct: 258 TALREG-----------MKAASISTDIYIRNRENGPVYD----LATTMEKLRVVGYDWPE 302

Query: 358 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR 417
           +    ++ PA+      KG + IG  ADL ++  +AE +   D              G  
Sbjct: 303 IIEKVTKAPAENFHLTQKGTLEIGKDADLTIFTIQAEEKTLTD------------SNGLT 350

Query: 418 LSG----KVLATISRGNLVYKEGNHA 439
                  + + TI  G +   EG+H 
Sbjct: 351 RVAKEQIRPIKTIIGGQIYDNEGHHH 376

>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* Length = 569

 Score = 82.7 bits (204), Expect = 3e-17
 Identities = 82/415 (19%), Positives = 128/415 (30%), Gaps = 88/415 (21%)

Query: 6   VEIKEGNIISIVSEE--DWPRNSKTGQVVDYGEAVI-------MPGLIDVHAHLDDPGRT 56
           + IK+G I  I      D     K    V      +         G ID H H       
Sbjct: 86  IGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFIS---- 141

Query: 57  EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST------ETLKLKVDAAEKRIYVDVGF 110
                P     A A G+TT+I         T +T        LK  + AAE+   +++GF
Sbjct: 142 -----PQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEE-YSMNLGF 195

Query: 111 WGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 170
                  NA N ++L   + AG +G K         D+  T  S I   L V  +Y   +
Sbjct: 196 LA---KGNASNDASLADQIEAGAIGFKIHE------DWG-TTPSAINHALDVADKYDVQV 245

Query: 171 LVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR------T 224
            +H               DTL+                EA   E    A   R      T
Sbjct: 246 AIH--------------TDTLN----------------EAGCVEDTMAAIAGRTMHTFHT 275

Query: 225 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE----EIPDGDTR 280
           +G   G    I+ ++   + L       T   ++  E     +          I + D +
Sbjct: 276 EGAGGGHAPDIIKVAGEHNILPAS-TNPTIPFTVNTEAEHMDMLMVCHHKDKSIKE-DVQ 333

Query: 281 FKCAPPIRD-AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 339
           F  +       A ++ L +    G   + SSD                 + W      + 
Sbjct: 334 FADSRIRPQTIAAEDTLHD---MGAFSITSSDSQA-----MGRVGEVITRTWQTADKNKK 385

Query: 340 VLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQVS-KGAIAIGNHADLVVWEPE 392
                           +++  S ++  PA   G     G++ +G  ADLV+W P 
Sbjct: 386 EFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPA 440

>1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme, temperature depende structural changes, hydrolase; HET: KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2 PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C* 1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C ... Length = 567

 Score = 69.7 bits (170), Expect = 6e-13
 Identities = 77/408 (18%), Positives = 129/408 (31%), Gaps = 70/408 (17%)

Query: 3   KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVI-------MPGLIDVHAHLDDPGR 55
           K  + +K+G I +I    +          +     VI         G ID H H   P +
Sbjct: 83  KADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIHWICPQQ 142

Query: 56  TEWEGFPSGTKAAAAGGITTLID---MPLNSDPSTISTE--TLKLKVDAAEKRIYVDVGF 110
            E          A   G+TT++     P     +T  T       ++  A   + V++G 
Sbjct: 143 AEE---------ALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGL 193

Query: 111 WGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 170
            G     N     AL   + AGV+GLK                + I   L+V       +
Sbjct: 194 LGKG---NVSQPDALREQVAAGVIGLKIHEDWGATP-------AAIDCALTVADEMDIQV 243

Query: 171 LVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 230
            +H++    +       +DTL      T               +++T         P   
Sbjct: 244 ALHSD----TLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAH-----PNIL 294

Query: 231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 290
                  L    +++D  ++            C H     AE++   ++R +        
Sbjct: 295 PSSTNPTLPYTLNTIDEHLDMLM--------VCHHLDPDIAEDVAFAESRIRRETIAA-- 344

Query: 291 ANKEKLWEALMD-GHIDMLSSDHSP--TVPELKL--LDEGNFLKAWGGISSLQFVLPVTW 345
                  + L D G   + SSD      V E+ L      + +K   G       L    
Sbjct: 345 ------EDVLHDLGAFSLTSSDSQAMGRVGEVILRTWQVAHRMKVQRGA------LAEE- 391

Query: 346 SYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPE 392
             G      +++  + ++  PA   G     G+I +G  ADLVVW P 
Sbjct: 392 -TGDNDNFRVKRYIAKYTINPALTHGIAHEVGSIEVGKLADLVVWSPA 438

>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} Length = 417

 Score = 68.6 bits (167), Expect = 8e-13
 Identities = 62/434 (14%), Positives = 121/434 (27%), Gaps = 91/434 (20%)

Query: 16  IVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITT 75
           I +     +     Q +D   A I PG +D+H H+   G    +     ++  A  G+TT
Sbjct: 46  IAAVGSALQAPADTQRIDAKGAFISPGWVDLHVHIWHGGT---DISIRPSECGAERGVTT 102

Query: 76  LIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLG 135
           L+D     + +       +  ++ + +RI                      A LN G +G
Sbjct: 103 LVDAGSAGEANF--HGFREYIIEPSRERIK---------------------AFLNLGSIG 139

Query: 136 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 195
           L +      + D    +   I E  +  + +   L V A                     
Sbjct: 140 LVACNRVPELRDIKDIDLDRILECYAENSEHIVGLKVRAS-------------------- 179

Query: 196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNG 255
                     SW    ++    +AK            +  VH+ +  +  D ++E    G
Sbjct: 180 -----HVITGSWGVTPVKLGKKIAKIL-------KVPMM-VHVGEPPALYDEVLEILGPG 226

Query: 256 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG-HIDMLSSDHSP 314
           D +T     H     +      D                       +G  +D+     S 
Sbjct: 227 DVVT-----HCFNGKSGSSIMEDEDLFNL-----------AERCAGEGIRLDIGHGGASF 270

Query: 315 TVPELKLLDEGNFL-------KAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 367
           +    +       L            ++   + L  T S      +  E +    +  PA
Sbjct: 271 SFKVAEAAIARGLLPFSISTDLHGHSMNFPVWDLATTMSKLLSVDMPFENVVEAVTRNPA 330

Query: 368 KLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 427
            +     +  + +G  AD  V++         D  +     +      +RL  +    + 
Sbjct: 331 SVIRLDMENRLDVGQRADFTVFDLV-------DADLEATDSNGDVSRLKRL-FEPRYAVI 382

Query: 428 RGNLVYKEGNHAPA 441
               +        A
Sbjct: 383 GAEAIAASRYIPRA 396

>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A* Length = 347

 Score = 59.7 bits (144), Expect = 6e-10
 Identities = 52/336 (15%), Positives = 98/336 (29%), Gaps = 60/336 (17%)

Query: 45  DVHAHLDDPGRTEWEGFP-SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR 103
           D H HL    R   +G          +      I MP N  P   + E       A  +R
Sbjct: 14  DWHLHL----R---DGDMLKTVVPYTSEIYGRAIVMP-NLAPPVTTVE----AAVAYRQR 61

Query: 104 I------YVDVGFWGGLVPENAYNASALEALLNAG-VLGLKSFMCPS-GINDFPMTNASH 155
           I        D          ++ + + LE   N G     K +   +   +   +T+   
Sbjct: 62  ILDAVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPANATANSSHGVTSVDA 121

Query: 156 IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 215
           I   L  + +   PLLVH E+          E   ++                      +
Sbjct: 122 IMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFIE--------------------SVM 161

Query: 216 LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 275
             + +            +   H++   +  D + +       +     P +L F+   + 
Sbjct: 162 EPLRQR------LTALKVVFEHITTKDA-ADYVRDGNER---LAATITPQHLMFNRNHML 211

Query: 276 DGDTR--FKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWG 332
            G  R    C P ++   +++ L E +  G     L +D +P     K    G       
Sbjct: 212 VGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCA----- 266

Query: 333 GISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAK 368
           G  +    L    +   +    L+   ++ S    +
Sbjct: 267 GCFNAPTALGSYATVFEEMN-ALQHFEAFCSVNGPQ 301

>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} Length = 396

 Score = 54.3 bits (130), Expect = 4e-08
 Identities = 78/461 (16%), Positives = 134/461 (29%), Gaps = 121/461 (26%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           V +  G +  +    + P      ++VD     + PG +D H+H+   G  E       +
Sbjct: 26  VLVSNGKVEKVGENIEDP----DAEIVDLTGKFLFPGFVDAHSHI---GLFEEGVGYYYS 78

Query: 66  --------------------------KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 99
                                     + A AGG+T+++ +P +++P       +K +   
Sbjct: 79  DGNEATDPVTPHVKALDGFNPQDPAIERALAGGVTSVMIVPGSANPVGGQGSVIKFRSII 138

Query: 100 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 159
            E+ I   V    GL                 G    + +          M  A  I++ 
Sbjct: 139 VEECI---VKDPAGLKM-------------AFGENPKRVYGERKQTPSTRMGTAGVIRDY 182

Query: 160 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 219
            + +  Y +   +    ++G E         +        +  R  +     I   + +A
Sbjct: 183 FTKVKNYMKKKELA--QKEGKEFTETDLKMEVGEMVLRKKIPARMHAHRADDILTAIRIA 240

Query: 220 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 279
           ++        G +L I H ++A     +L E K                      P    
Sbjct: 241 EEF-------GFNLVIEHGTEAYKISKVLAEKKIP----------------VVVGPLLTF 277

Query: 280 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 339
           R K            KL +    G +  L  DH     E   +     +           
Sbjct: 278 RTKLELKDLTMETIAKLLKD---GVLIALMCDHPVIPLEFATVQAATAM----------- 323

Query: 340 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK-GAIAIGNHADLVVWEPEAEFELD 398
                     +YG   E L    +  PAK+ G   + G+I  G  ADLVVW         
Sbjct: 324 ----------RYGAKEEDLLKILTVNPAKILGLEDRIGSIEPGKDADLVVW--------- 364

Query: 399 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 439
           + HP  MK               V      G  V++   H 
Sbjct: 365 SGHPFDMKS-------------VVERVYIDGVEVFRREGHH 392

>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* Length = 382

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 19/107 (17%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH-------LDDPGRTE 57
           AV I +G I S+    + P      +      A++ PG IDV  +        D      
Sbjct: 20  AVVIADGLIKSVCPVAELPPE---IEQRSLNGAILSPGFIDVQLNGCGGVQFNDTAEAVS 76

Query: 58  WEGFPSGTKAAAAGGITTLIDMPLNSDPSTI--STETLKLKVDAAEK 102
            E      KA    G T  +       P+ I  S E +K  V    +
Sbjct: 77  VETLEIMQKANEKSGCTNYL-------PTLITTSDELMKQGVRVMRE 116

>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A* Length = 426

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 14/86 (16%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL--DDPGRTEWEGFP 62
            + I++G I  +  +     N     V+D     IMPGLID+H H+   +         P
Sbjct: 26  EILIEDGFIREVSDKPIKSSN---AHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLP 82

Query: 63  SGTKAAAA---------GGITTLIDM 79
           +      A          G TT+ D 
Sbjct: 83  NVLVTLRAVPIMRAMLRRGFTTVRDA 108

>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* Length = 423

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 14/86 (16%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL--DDPGRTEWEGFP 62
            V I    I+ +        N    Q +D     +MPG ID H H+   +         P
Sbjct: 26  HVVIDGERIVEVTDRPVDLPN---AQAIDVRGKTVMPGFIDCHVHVLASNANLGVNATQP 82

Query: 63  SGTKAAAA---------GGITTLIDM 79
           +   A  +          G T++ D 
Sbjct: 83  NILAAIRSLPILDAMLSRGFTSVRDA 108

>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A Length = 496

 Score = 50.4 bits (120), Expect = 7e-07
 Identities = 72/518 (13%), Positives = 132/518 (25%), Gaps = 145/518 (27%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           V ++   I ++             + +D    V+ PG ID H H D              
Sbjct: 43  VGVRGDRIAAVGDLSASS----ARRRIDVAGKVVSPGFIDSHTHDD--NYLLKHR---DM 93

Query: 66  KAAAAGGITTLID------------------MPLNSDPSTISTETLKLKVDAAEKRIYVD 107
               + G+TT++                   + L  +  +         ++A        
Sbjct: 94  TPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAPPA- 152

Query: 108 VGFWGGLVPENAYNASA-------------------LEALLNAGVLGLKSFMCPSGINDF 148
                 +V  +   A+                     +  L +G +G       +G    
Sbjct: 153 -VNAACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIG-----ISTGAFYP 206

Query: 149 PMTNASH--IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS 206
           P  +AS   I E    L  +      H   E                             
Sbjct: 207 PAAHASTEEIIEVCRPLITHGGVYATHMRDE---------------------------GE 239

Query: 207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS--------LDLLMEAKTNGDSI 258
               A+ E   + ++           + I H               L L+  A  + D +
Sbjct: 240 HIVQALEETFRIGREL-------DVPVVISHHKVMGKLNFGRSKETLALIEAAMASQD-V 291

Query: 259 TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG------HIDMLSSDH 312
           +++  P Y+A S     D                 E     L +           +  + 
Sbjct: 292 SLDAYP-YVAGSTMLKQDRVLLAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPEL 350

Query: 313 SPTVPELKLLDEGNFLKAWG---------GISSLQFVLPVTWS--------YGRKYGV-T 354
            P      ++DE +  +            G+   +   P  W         Y R  G+  
Sbjct: 351 QPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDERPHPRLWGTFPRVLGHYSRDLGLFP 410

Query: 355 LEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE-----AEFELDNDHPVHMKHPS 409
           LE      +   A   G   +G +  G +ADLVV++P      A FE   +    +    
Sbjct: 411 LETAVWKMTGLTAAKFGLAERGQVQPGYYADLVVFDPATVADSATFEHPTERAAGIHS-- 468

Query: 410 ISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 447
                              G  V+++ +      G  +
Sbjct: 469 ---------------VYVNGAAVWEDQSFTGQHAGRVL 491

>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 Length = 475

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 20/126 (15%), Positives = 36/126 (28%), Gaps = 33/126 (26%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDP-- 53
            + + +G I +    E         ++    + +I+PG ID H HL          +   
Sbjct: 37  LMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHIHLPQTRVLGAYGEQLL 96

Query: 54  ----GRT--EWEGFPS------GTKAAAA----GGITTLIDMPLNSDPSTISTETLKLKV 97
                    E   +        G K         G TT          ++ S    +   
Sbjct: 97  PWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAF------TSSSPVATEELF 150

Query: 98  DAAEKR 103
           + A +R
Sbjct: 151 EEASRR 156

>3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* Length = 408

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 15/81 (18%)

Query: 10  EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL--DDPGRTEWEGFPSGTKA 67
               I+ +       N+K   V+   + +++PGL+D H H+  +D    E     S    
Sbjct: 31  RNGKIAEIG----KINTKDATVISIPDLILIPGLMDSHVHIVGNDSKGEESIADSSHMGT 86

Query: 68  AAA---------GGITTLIDM 79
                        G TT+ ++
Sbjct: 87  VWGVVNAEKTLMAGFTTVRNV 107

>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* Length = 480

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 82/437 (18%), Positives = 136/437 (31%), Gaps = 81/437 (18%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           + +++G I +I      P         D    ++ PG IDVH H D     + +      
Sbjct: 29  LGVRDGRIAAIGELGAHP----ARHAWDASGKIVAPGFIDVHGHDDLMFVEKPDLRWK-- 82

Query: 66  KAAAAGGITTLIDM-----------------PLNSDPSTISTETLKLKVDAAEKR-IYVD 107
               + GITT++                    L     T     +     A + +   ++
Sbjct: 83  ---TSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFADVPAYFAALDAQRPMIN 139

Query: 108 VGFWGGLVPENAYNASA-------------------LEALLNAGVLGLKSFMCPSGINDF 148
           V     LV       +A                   L+A L AG +G  + +        
Sbjct: 140 VAA---LVGHANLRLAAMRDPQAAPTAAEQQAMQDMLQAALEAGAVGFSTGLAY-----Q 191

Query: 149 PMTNAS--HIKEGLSVLARYKRPLLVHAEMEKGS-----ERHVKLEDDTLDTRSYSTYLK 201
           P   A    ++    V A  +R    H   E        E  + +   T      S +  
Sbjct: 192 PGAVAQAAELEGLARVAAERRRLHTSHIRNEADGVEAAVEEVLAIGRGTGCATVVSHHKC 251

Query: 202 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 261
             P +W     R  L      R  G      ++        SS  L+ E     D I + 
Sbjct: 252 MMPQNWGR--SRATLANIDRAREQGVEVALDIY----PYPGSSTILIPERAETIDDIRIT 305

Query: 262 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID-----MLSSDHSPTV 316
               +   S E + D   R+ C      AA +     A+     +     +         
Sbjct: 306 WSTPHPECSGEYLADIAARWGCDKT--TAARRLAPAGAIYFAMDEDEVKRIFQHPCCMVG 363

Query: 317 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASWWSERPAKLAGQVSK 375
            +    D     + WG   S   VL     Y R+  + TLEQ  +  +  PA++ G   +
Sbjct: 364 SDGLPNDARPHPRLWG---SFTRVLG---RYVREARLMTLEQAVARMTALPARVFGFAER 417

Query: 376 GAIAIGNHADLVVWEPE 392
           G +  G  AD+VV++P+
Sbjct: 418 GVLQPGAWADVVVFDPD 434

>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} Length = 472

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 28/103 (27%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDPGR 55
           AV +  G I++++   D        + V   +A +MPGL++ H H          DD   
Sbjct: 37  AVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGLVNAHTHNPMTLLRGVADDLPL 96

Query: 56  TEW---------------EGFPSGTKAAAA----GGITTLIDM 79
             W               E    GT  A A    GG T + + 
Sbjct: 97  MVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVNEN 139

>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 Length = 418

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 13/82 (15%)

Query: 10  EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---DDPGRTEWEGFPSGTK 66
           +GNIIS + +     ++     +D  +  ++PGL+D+H H                   +
Sbjct: 33  DGNIISDIKKGF-ISSNDFEDYIDLRDHTVLPGLMDMHVHFGQEYQSKAQAPIKVEREMQ 91

Query: 67  AAAA---------GGITTLIDM 79
           A  A          G TT+  +
Sbjct: 92  AILATQHAYVTFKSGFTTVRQV 113

>3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} Length = 81

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 5  AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
          A+ I +G I ++  +E     ++  + +D      +PGL D H H+
Sbjct: 25 AIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLNDSHIHV 70

>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* Length = 381

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 14/89 (15%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH----LDDPGRTEWEG 60
           AV I    I ++   E  P       VVD   A + PG ID+  +    +        E 
Sbjct: 23  AVIINGDKIEAVCPIESLPSE---MNVVDLNGANLSPGFIDLQLNGCGGVMFNDEITAET 79

Query: 61  FPSGTKAAAAGGITTLIDMPLNSDPSTIS 89
             +  KA    G T+ +       P+ I+
Sbjct: 80  IDTMHKANLKSGCTSFL-------PTLIT 101

>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* Length = 416

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWE----- 59
           A+ + EG I ++V  +D           D    ++ PGLID H HL   G    E     
Sbjct: 31  ALGVHEGRIHALVPMQDLKG-PYPAHWQDMKGKLVTPGLIDCHTHLIFAGSRAEEFELRQ 89

Query: 60  -GFPSGTKAAAAGGITTLI 77
            G P    A   GGI + +
Sbjct: 90  KGVPYAEIARKGGGIISTV 108

>2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 Length = 458

 Score = 47.1 bits (112), Expect = 8e-06
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 5  AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE 57
           + +     I  V+             +D    ++MPGLI+ H HL   G+  
Sbjct: 35 TIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMPGLINAHTHLFSQGKPL 87

>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 Length = 420

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 26/98 (26%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD------------- 51
            V +    + +    ++  R        +   AVI P  ++ H HLD             
Sbjct: 58  GVVVVGETVAAAGHPDE-LRRQYPHAAEERAGAVIAPPPVNAHTHLDMSAYEFQALPYFQ 116

Query: 52  ------DPGRTEWEGFPSGTKAAAA----GGITTLIDM 79
                   GR       +  +A A      G   + D+
Sbjct: 117 WIPEVVIRGRHLRG--VAAAQAGADTLTRLGAGGVGDI 152

>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A Length = 608

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 65
           + I    I S+             QV+D G A + PGLID H H++    T    +    
Sbjct: 57  IGIVGALIASVHEPASRRDA---AQVIDAGGAYVSPGLIDTHMHIESSMIT-PAAY---A 109

Query: 66  KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY----- 120
            A  A G+TT++  P     +    + ++    A E      +      VP         
Sbjct: 110 AAVVARGVTTIVWDPH-EFGNVHGVDGVRWAAKAIENLPLRAILLAPSCVPSAPGLERGG 168

Query: 121 ---NASALEALLNAG-VLGLKSFMCPSGI 145
              +A+ L  LL+   + G+   M   G+
Sbjct: 169 ADFDAAILADLLSWPEIGGIAEIMNMRGV 197

>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A Length = 421

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 5  AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
           V I E  I+    +       +  +++D    ++ PGL+D H HL
Sbjct: 39 VVGIHEQKIVFAGQKGAEAG-YEADEIIDCSGRLVTPGLVDPHTHL 83

>2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 Length = 439

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 5  AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 50
           + + +G I S+    + P   K   ++D+   +I+PG+ D+HAH 
Sbjct: 33 YIVVIDGKIASV--SSNLPDKYKGNPIIDFRNNIIIPGMNDLHAHA 76

>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A Length = 419

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDPGRTEWE---- 59
            + ++ G I     E D P +  T  +  D G   I P LID H HL   G    E    
Sbjct: 41  VIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHLVFGGNRAMEFEMR 100

Query: 60  --GFPSGTKAAAAGGITTLID 78
             G      A A GGI + + 
Sbjct: 101 LNGATYEEIAKAGGGIVSSVR 121

>3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} Length = 427

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 26/96 (27%)

Query: 10  EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDPGRTEW-- 58
           +  I +I + E+  +      V     ++++PG  + H HL                W  
Sbjct: 24  DKKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANPHLHLEFSANKATLQYGDFIPWLY 83

Query: 59  -----------EGFPSGTKAAAA----GGITTLIDM 79
                          +  +   +     G T +  +
Sbjct: 84  SVIRHREDLLPLCDGACLEQTLSSIIQTGTTAIGAI 119

>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* Length = 447

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 29/103 (28%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDPGR 55
           A+ I++G I +I+   D     +  + ++  + V+MPGLI++H H          DD   
Sbjct: 29  AIAIRDGKIAAIIPAADAAGL-EADERLELPDHVLMPGLINLHGHSAMSLLRGLADDKAL 87

Query: 56  TEW---------------EGFPSGTKAAAA----GGITTLIDM 79
            +W               +    G+  A      GG TT+ DM
Sbjct: 88  MDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRGGTTTINDM 130

>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} Length = 403

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 66/447 (14%), Positives = 119/447 (26%), Gaps = 86/447 (19%)

Query: 6   VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD-----DPGRTEWEG 60
           + I    II I ++ +          +D    ++ PG +D H H+D        R     
Sbjct: 23  IGIVGDRIIKIEAKIEGT----VKDEIDAKGNLVSPGFVDAHTHMDKSFTSTGERLPKFW 78

Query: 61  FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-----RIYVDVGFWGGLV 115
               T+ AA   I   +    N+    I    ++             R +VDV       
Sbjct: 79  SRPYTRDAA---IEDGLKYYKNATHEEIKRHVIEHAHMQVLHGTLYTRTHVDVDSVAKTK 135

Query: 116 PENAYNASALEALLNAGVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 174
              A   +  E      ++ ++      SG      +  S I++ L +       +    
Sbjct: 136 AVEAVLEAKEEL---KDLIDIQVVAFAQSGFFVDLES-ESLIRKSLDMGCDLVGGVDPAT 191

Query: 175 EMEKGSERHVKLEDDTLDT-RSYSTYLKTRPPSWEEAAIRELLTVAKDTRT---DGPAEG 230
             E   E  +   D      + Y   +           +  +  +A+ T      G    
Sbjct: 192 -RENNVEGSL---DLCFKLAKEYDVDIDYHIHDIGTVGVYSINRLAQKTIENGYKGRVTT 247

Query: 231 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP-IRD 289
           +H      + +    + +   K +G                 ++ +      CA   IRD
Sbjct: 248 SHAWCFADAPSEWLDEAIPLYKDSGMKFVTCFSSTPPTMPVIKLLEAGINLGCASDNIRD 307

Query: 290 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 349
                  W    +G  DM+                     A      L+           
Sbjct: 308 F------WVPFGNG--DMVQ-------------------GALIETQRLELKTNRD----- 335

Query: 350 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPS 409
                L  +    +   A++ G      I +G  ADLVV    +      D         
Sbjct: 336 -----LGLIWKMITSEGARVLGIEKNYGIEVGKKADLVVLNSLSPQWAIIDQA------- 383

Query: 410 ISAYLGRRLSGKVLATISRGNLVYKEG 436
                      K L  I  G ++ K+ 
Sbjct: 384 -----------KRLCVIKNGRIIVKDE 399

>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} Length = 451

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 29/103 (28%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDPGR 55
           A+ I++G I  +   E   R+  T ++ +    ++ PGL++ H H          DD   
Sbjct: 31  ALGIRDGQIALVAPREQAMRHGAT-EIRELPGMLLAPGLVNAHGHSAMSLFRGLADDLPL 89

Query: 56  TEW---------------EGFPSGTKAAAA----GGITTLIDM 79
             W               +    GT+ A A    GGIT   DM
Sbjct: 90  MTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCFSDM 132

>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} Length = 396

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 18/91 (19%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH------LDDPGRTEW 58
            V I +G I ++ +E   P+   + ++    ++V++PG+ID+H H        D     +
Sbjct: 23  YVGINDGKISTVSTER--PKEPYSKEIQAPADSVLLPGMIDIHIHGGYGADTMDA---SF 77

Query: 59  EGFPSGTKAAAAGGITTLIDMPLNSDPSTIS 89
                 +      G T+ +        +TI+
Sbjct: 78  STLDIMSSRLPEEGTTSFL-------ATTIT 101

>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} Length = 468

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 30/103 (29%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDPGR 55
            + IK+G I++I  +      +   + +D G+ V+MPG ++ H H          DD   
Sbjct: 52  CLLIKDGIILAIEPQSSCQIPAT--ETLDLGQQVLMPGWVNAHGHAAMSLFRGLADDLPL 109

Query: 56  TEW---------------EGFPSGTKAAAA----GGITTLIDM 79
             W                    GT+ A A     G TT  DM
Sbjct: 110 MTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQSGTTTFADM 152

>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* Length = 456

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 25/166 (15%), Positives = 49/166 (29%), Gaps = 46/166 (27%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL-----------DDP 53
            + I    I+++  +          + +D    + +PGLI+ H HL           +  
Sbjct: 24  DILIDGPKIVAVGKDLSDRS---VSRTIDGRGMIALPGLINSHQHLYEGAMRAIPQLERV 80

Query: 54  GRTEW--------EGFPS-----------GTKAAAA----GGITTLIDMPLNSDPSTIST 90
               W         G+               +A       GGITT+ D      P   + 
Sbjct: 81  TMASWLEGVLTRSAGWWRDGKFGPDVIREVARAVLLESLLGGITTVADQ-HLFFPGATAD 139

Query: 91  ETLKLKVDAAEK--------RIYVDVGFWGGLVPENAYNASALEAL 128
             +   ++AA          R  + +G   G   ++ +       +
Sbjct: 140 SYIDATIEAATDLGIRFHAARSSMTLGKSEGGFCDDLFVEPVDRVV 185

>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* Length = 534

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTG--QVVDYGEAVIMPGLIDVHAHLDDPGRT 56
            + I    ++         R ++    +++D     +MP   D H HLD+ G +
Sbjct: 57  GLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDELGMS 110

>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A Length = 430

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 10/46 (21%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 6  VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 51
          + +++G I +I ++        T   +D  + +++P  ++ H HLD
Sbjct: 26 IHLQDGKISAIDAQSGVM--PITENSLDAEQGLVIPPFVEPHIHLD 69

>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A Length = 406

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 34/102 (33%)

Query: 5   AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDPGR 55
           AVEI+ G I  ++  E           +D    ++MP L + H H          +D   
Sbjct: 20  AVEIENGTIKRVLQGEV-------KVDLDLSGKLVMPALFNTHTHAPMTLLRGVAEDLSF 72

Query: 56  TEW--------------EGFPSGTKAAAA----GGITTLIDM 79
            EW              +    GT  A       GI   +DM
Sbjct: 73  EEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDM 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	450
3dc8_A	490	Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K	100.0
3sfw_A	461	Dihydropyrimidinase; hydrolase, zinc binding; HET:	100.0
3e74_A	473	Allantoinase; (beta/alpha)8-barrel domain, small b	100.0
3gri_A	424	Dihydroorotase, dhoase; hydrolase, IDP00795, metal	100.0
3hm7_A	448	Allantoinase; metallo-dependent hydrolase, protein	100.0
3mpg_A	428	Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus	100.0
1gkp_A	458	Hydantoinase; hydrolase, dihydropyrimidinase, cycl	100.0
2fty_A	559	Dihydropyrimidinase; alpha/beta barrel, beta-sandw	100.0
1gkr_A	458	Hydantoinase, non-ATP dependent L-selective hydant	100.0
1nfg_A	457	D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2	100.0
2ftw_A	521	Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba	100.0
2vm8_A	501	Dihydropyrimidinase-related protein 2; neurogenesi	100.0
2vr2_A	541	Dihydropyrimidinase; hydantoinase, metal-binding,	100.0
2gwn_A	452	Dihydroorotase; zinc-binding prote structural geno	100.0
2z00_A	426	Dihydroorotase; zinc binding protein, hydrolase, m	100.0
1xrt_A	467	Dihydroorotase, dhoase; amidohydrolase, metalloenz	100.0
3gip_A	480	N-acyl-D-glutamate deacylase; amidohydrolase famil	100.0
3pnu_A	359	Dihydroorotase; TIM barrel, zinc binding, hydrolas	100.0
1rk6_A	496	D-aminoacylase; TIM barrel, beta barrel, insertion	100.0
3h4u_A	479	Amidohydrolase; signature of Zn ligands, structura	100.0
2z26_A	347	Dihydroorotase, dhoase; TIM barrel, hydrolase; HET	100.0
4f0r_A	447	5-methylthioadenosine/S-adenosylhomocysteine DEAM;	100.0
3lnp_A	468	Amidohydrolase family protein OLEI01672_1_465; TIM	100.0
3ls9_A	456	Triazine hydrolase; atrazine chlorohydrolase TRZN;	100.0
3gnh_A	403	L-lysine, L-arginine carboxypeptidase CC2672; N-me	100.0
4dyk_A	451	Amidohydrolase; adenosine deaminase, nysgrc, struc	100.0
2r8c_A	426	Putative amidohydrolase; unknown source, sargasso	100.0
4dzh_A	472	Amidohydrolase; adenosine deaminase, nysgrc, struc	100.0
3feq_A	423	Putative amidohydrolase; unknown source, sargasso	100.0
2paj_A	492	Putative cytosine/guanine deaminase; NYSGXRC, PSI-	100.0
2ics_A	379	Adenine deaminase; TIM barrel, binuclear zinc, ade	100.0
2vun_A	386	Enamidase; nicotinate degradation, binuclear metal	100.0
2qt3_A	403	N-isopropylammelide isopropyl amidohydrolase; N-is	100.0
3hpa_A	479	Amidohydrolase; signature of Zn ligands, structura	100.0
2ogj_A	417	Dihydroorotase; TIM barrel, binuclear zinc, imidaz	100.0
2p9b_A	458	Possible prolidase; protein structure initiative I	100.0
3be7_A	408	Zn-dependent arginine carboxypeptidase; unknown so	100.0
2ood_A	475	BLR3880 protein; PSI-II, PSI-2, guanine deaminase,	100.0
1e9y_B	569	Urease subunit beta; hydrolase, dodecamer; HET: KC	100.0
4aql_A	476	Guanine deaminase; hydrolase, purine metabolism; H	100.0
1ra0_A	430	Cytosine deaminase; alpha-beta barrel, hexamer, co	100.0
1onw_A	390	Isoaspartyl dipeptidase; amidohydrolase, hydrolase	100.0
2bb0_A	421	Imidazolonepropionase; TIM barrel, hydrolase; 2.00	99.98
2q09_A	416	Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio	99.98
2i9u_A	439	Cytosine/guanine deaminase related protein; protei	99.98
4ac7_C	570	Urease subunit alpha; hydrolase, bacillus pasteuri	99.98
1p1m_A	406	Hypothetical protein TM0936; putative metal depend	99.97
3nqb_A	608	Adenine deaminase 2; PSI-II, structural genomics,	99.97
4ubp_C	570	Protein (urease (chain C)); bacillus pasteurii, ni	99.97
2qs8_A	418	XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p	99.97
3v7p_A	427	Amidohydrolase family protein; iron binding site,	99.97
4f0l_A	458	Amidohydrolase; ssgcid, structural genomics, seatt	99.97
2puz_A	419	Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino	99.97
3mdu_A	453	N-formimino-L-glutamate iminohydrolase; amonohydra	99.97
2vhl_A	396	N-acetylglucosamine-6-phosphate deacetylase; N- ac	99.97
3ooq_A	396	Amidohydrolase; structural genomics, protein struc	99.97
1yrr_A	382	N-acetylglucosamine-6-phosphate deacetylase; (beta	99.96
3mtw_A	403	L-arginine carboxypeptidase CC2672; hydrolase; HET	99.96
4gy7_A	840	Urease; JACK bean, hydrolase, ME binding, nickel;	99.96
3iv8_A	381	N-acetylglucosamine-6-phosphate deacetylase; IDP01	99.96
2imr_A	420	Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2,	99.95
1o12_A	376	N-acetylglucosamine-6-phosphate deacetylase; struc	99.95
3icj_A	534	Uncharacterized metal-dependent hydrolase; structu	99.94
3mkv_A	426	Putative amidohydrolase; sargasso SEA, structural	99.94
4ep8_C	566	Urease subunit alpha; alpha-beta barrel, nickel me	99.93
3ggm_A	81	Uncharacterized protein BT9727_2919; bacillus cere	99.31
1bf6_A	291	Phosphotriesterase homology protein; hypothetical	99.14
2ob3_A	330	Parathion hydrolase; metalloenzyme, TIM barrel, ne	99.07
1zzm_A	259	Putative deoxyribonuclease YJJV; hydrolaze, zinc,	99.06
2y1h_A	272	Putative deoxyribonuclease tatdn3; hydrolase; 2.50	99.05
3rcm_A	287	TATD family hydrolase; HET: CIT; 2.05A {Pseudomona	99.02
2vc7_A	314	Aryldialkylphosphatase; phosphotriesterase, promis	98.98
1yix_A	265	Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW	98.94
1xwy_A	264	DNAse TATD, deoxyribonuclease TATD; TIM barrael, z	98.88
2xio_A	301	Putative deoxyribonuclease tatdn1; hydrolase; 1.19	98.83
3ipw_A	325	Hydrolase TATD family protein; niaid, ssgcid, seat	98.78
3gg7_A	254	Uncharacterized metalloprotein; structural genomic	98.78
1j6o_A	268	TATD-related deoxyribonuclease; structural genomic	98.69
3ovg_A	363	Amidohydrolase; structural genomics, PSI-2, protei	98.68
4i6k_A	294	Amidohydrolase family protein; enzyme function ini	98.67
2gzx_A	265	Putative TATD related DNAse; deoxyribonuclease, NE	98.66
3rhg_A	365	Putative phophotriesterase; hydrolase, amidohydrol	98.61
3k2g_A	364	Resiniferatoxin-binding, phosphotriesterase- relat	98.49
3pnz_A	330	Phosphotriesterase family protein; amidohydrolase	98.49
3cjp_A	272	Predicted amidohydrolase, dihydroorotase family; s	98.47
3gtx_A	339	Organophosphorus hydrolase; mutant, amidohydrolase	98.35
2ffi_A	288	2-pyrone-4,6-dicarboxylic acid hydrolase, putativ;	98.34
3guw_A	261	Uncharacterized protein AF_1765; alpha-beta protei	98.28
2dvt_A	327	Thermophilic reversible gamma-resorcylate decarbo;	98.26
3e2v_A	401	3'-5'-exonuclease; structural genomics, hydrolase,	98.17
3tn4_A	360	Phosphotriesterase; lactonase, hydrolase; HET: KCX	98.16
2pgf_A	371	Adenosine deaminase; metallo-dependent hydrolase,	98.03
4do7_A	303	Amidohydrolase 2; enzyme function initiative, EFI,	97.91
2f6k_A	307	Metal-dependent hydrolase; metal dependent hydroly	97.86
4d9a_A	303	2-pyrone-4,6-dicarbaxylate hydrolase; structural g	97.79
3rys_A	343	Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2	97.62
3iar_A	367	Adenosine deaminase; purine metabolism structural	97.6
3pao_A	326	Adenosine deaminase; structural genomics, PSI-2, p	97.34
3irs_A	291	Uncharacterized protein BB4693; structural genomic	96.97
3ij6_A	312	Uncharacterized metal-dependent hydrolase; structu	96.73
4gxw_A	380	Adenosine deaminase; amidohydrolase, COG1816, EFI,	95.88
2hbv_A	334	2-amino-3-carboxymuconate 6-semialdehyde decarbox;	95.73
2wm1_A	336	2-amino-3-carboxymuconate-6-semialdehyde decarboxy	95.35
4inf_A	373	Metal-dependent hydrolase; amidohydrolase, metal b	95.13
2a3l_A	701	AMP deaminase, AMPD; atampd, AT2G38280, adenosine	94.4
3lgd_A	508	Adenosine deaminase CECR1; TIM barrel, dimerizatio	93.8
3nur_A	357	Amidohydrolase; TIM barrel; 1.75A {Staphylococcus	92.51
3qy7_A	262	Tyrosine-protein phosphatase YWQE; TIM barrel, pol	91.3

>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti}

Probab=100.00  E-value=9.4e-58  Score=449.81  Aligned_cols=425  Identities=24%  Similarity=0.349  Sum_probs=370.3

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCC--CcccchHHHHHHHHhCCceEEEeCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--TEWEGFPSGTKAAAAGGITTLIDMP   80 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~--~~~~~~~~~~~~~~~~GvT~~~~~~   80 (450)
                      .++|+|+||+|++|++..+      +.++||++|++|+|||||+|+|+..+..  ...+++....+.++++|||++++++
T Consensus        18 ~~~v~I~~G~I~~i~~~~~------~~~viD~~g~~v~PG~ID~H~H~~~~~~~~~~~e~~~~~~~aa~~~GvTtv~~~~   91 (490)
T 3dc8_A           18 KADVKVEGGRIVEIGPNLS------GAETLDATGCYVMPGGIDPHTHLEMPFMGTYSSDDFESGTRAALAGGTTMVVDFA   91 (490)
T ss_dssp             ECEEEEETTEEEEEESSCC------CSEEEECTTCEEEECEEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             eeeEEEECCEEEEeccCCC------CCeEEECCCCEEecCEEeeccccCCCCCCCCCHHHHHHHHHHHHHcCEEeecccC
Confidence            5789999999999997532      5689999999999999999999988765  6778899999999999999999998


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHH-HcCCcEEEEecccCCCCCCCCCCHHHHHHH
Q 013050           81 LNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEG  159 (450)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~  159 (450)
                       ++.+.....+.+....+... ...+++.+++.+...+.+.++++.++. +.|+.+++.|+.+.   +.+.++.+.+.++
T Consensus        92 -~~~p~~~~~~~~~~~~~~a~-~~~~d~~~~~~~~~~~~~~l~el~~l~~~~G~~~~k~~~~~~---~~~~~~~~~l~~~  166 (490)
T 3dc8_A           92 -LPSPGQSLLEALTMWDNKST-RANCDYSFHMAITWWGEQVFNEMETIVKDKGINTFKHFMAYK---GALMVDDDEMFSS  166 (490)
T ss_dssp             -CCC-CCCHHHHHHHHHHHTT-TCSSEEEEEEECCSCSHHHHHHHHHHHHHSCCCEEEEESCST---TTTBCCHHHHHHH
T ss_pred             -CCCCCcCHHHHHHHHHHHhh-cccceeeeEEEEecCcHHHHHHHHHHHHhCCCCEEEEEecCC---CCccCCHHHHHHH
Confidence             67676666777777666665 667899888877776666678888888 79999999998763   3345789999999


Q ss_pred             HHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecC
Q 013050          160 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS  239 (450)
Q Consensus       160 ~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~  239 (450)
                      ++.|+++|+++.+|+++...+..... ...+.+......+....|...|.+.+.+.+.+++..       +.++|+.|++
T Consensus       167 ~~~a~~~g~~v~~HaE~~~~i~~~~~-~~~~~g~~~~~~~~~~rP~~~E~~av~r~i~la~~~-------g~~lhi~HvS  238 (490)
T 3dc8_A          167 FQRCAALGALPLVHAENGDVVAQLQA-KLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMA-------GCPVYIVHTS  238 (490)
T ss_dssp             HHHHHHHTCEEEEECSCHHHHHHHHH-HHHHTTCCSHHHHHHTSCHHHHHHHHHHHHHHHHHH-------TCCEEESSCC
T ss_pred             HHHHHhcCCEEEEecCChHHHHHHHH-HHHhcCCCCccccccCCCHHHHHHHHHHHHHHHHHh-------CCcEEEEeCC
Confidence            99999999999999998876542111 111233334445667899999999999999999987       9999999999


Q ss_pred             ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC----CCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC
Q 013050          240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG----DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT  315 (450)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~  315 (450)
                      +. +.++.++.+++.|+.+++++||+++.++.+.+...    +..++++||++...++..+|+++..|...+++||+.|+
T Consensus       239 t~-~~~~li~~ak~~G~~Vt~e~~ph~l~l~~~~~~~~~~~~~~~~~~~Pplr~~~d~~aL~~~l~~G~id~i~sDh~p~  317 (490)
T 3dc8_A          239 CE-QAHEAIRRARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRVMSPPFRNKLHQDSLWAGLASGSLQVVATDHCAF  317 (490)
T ss_dssp             SH-HHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSCHHHHHHTCCSSCCCCGGGHHHHHHHHHHTSSCCCBCCBCCC
T ss_pred             CH-HHHHHHHHHHHCCCeEEEEEchHHheeCHHHhcCcCcccCCceEECCCCCChHHHHHHHHHHhcCCceEEECCCCCC
Confidence            98 99999999999999999999999999999888766    67789999999999999999999999999999999999


Q ss_pred             ChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCC
Q 013050          316 VPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEA  393 (450)
Q Consensus       316 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~  393 (450)
                      ....+....++|...++|+.+++..++.++.. ....++|++++++++|.|||+++|+ ++.|+|++|+.|||+|||.+.
T Consensus       318 ~~~~K~~g~~~f~~~~~G~~gle~~l~~~~~~~v~~~~l~~~~~~~~~t~~~A~~~gl~~~~G~l~~G~~ADlvv~d~~~  397 (490)
T 3dc8_A          318 TTEQKRFGVGDFTRIPNGTGGLEDRMPMLWTYGVATGRITMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKR  397 (490)
T ss_dssp             CHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEEEEEEE
T ss_pred             CHHHhhccCCChhhCCCChHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCCccCCCCcCCEEEEecCc
Confidence            99988777779999999999999999999887 4567899999999999999999999 789999999999999999998


Q ss_pred             ceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050          394 EFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA  449 (450)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~  449 (450)
                      ++++..+ .+.++.. ++||.|..+.++|..||++|++||++|+++.. ..||++++
T Consensus       398 ~~~i~~~-~~~s~~~-~sp~~g~~~~g~v~~t~~~G~~v~~~g~~~~~~~~G~~~~~  452 (490)
T 3dc8_A          398 SKTISAK-TQQSAID-YNVFEGKTVTGLPRFTLTRGVVSIEEGTVKTQEGHGEFVRR  452 (490)
T ss_dssp             EEECCTT-TCSSSSS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCC
T ss_pred             ceEechh-hccccCC-CCcccCcEEeeEEEEEEECCEEEEECCEEcccCCCceeccC
Confidence            8999888 8888888 99999999999999999999999999999976 58999976

>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A*

Probab=100.00  E-value=7.4e-56  Score=435.84  Aligned_cols=429  Identities=27%  Similarity=0.391  Sum_probs=366.2

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC--CCCcccchHHHHHHHHhCCceEEEeC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDM   79 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~--~~~~~~~~~~~~~~~~~~GvT~~~~~   79 (450)
                      ..++|+|+||+|++|++..+.    .+.++||++|++|+|||||+|+|+..+  +....+++....+.++++|||+++++
T Consensus        17 ~~~~v~i~~g~I~~i~~~~~~----~~~~viD~~g~~v~PG~ID~H~H~~~~~~~~~~~e~~~~~~~~~~~~GvTt~~~~   92 (461)
T 3sfw_A           17 YQADVLIDGEKVVAIGSDLQA----TDAEVIDATGYYLLPGGIDPHTHLDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDF   92 (461)
T ss_dssp             EECEEEEETTEEEEEESCCCC----SSCEEEECTTCEEEECEEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEE
T ss_pred             EEEEEEEECCEEEEEeCCCCC----CCCeEEECCCCEEEeeeEEeEeccCcCCCCcccHhHHHHHHHHHHhCCEEEEEcc
Confidence            357999999999999986532    467899999999999999999999875  44566789999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHH
Q 013050           80 PLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKE  158 (450)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~  158 (450)
                      + ++.+.......+....+.......+++.+++.......+..+.+.++.+ .|+.+++.++.+.+   .+..+.+.+.+
T Consensus        93 ~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~ik~~~~~~~---~~~~~~~~l~~  168 (461)
T 3sfw_A           93 C-LTSKGESLHSAIATWHEKARGKAVIDYGFHLMVSDANDHVLEELESVVNNEGITSLKVFMAYKN---VLMADDETLFK  168 (461)
T ss_dssp             E-CCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSCCCHHHHHHHHHHHHTSCCCEEEEESSSTT---TTBCCHHHHHH
T ss_pred             C-CCCCcchHHHHHHHHHHHhhcCcEEEEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEEecCC---CcccCHHHHHH
Confidence            7 6666666677777766666667788888887776656667888999999 99999999887642   24688999999


Q ss_pred             HHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEec
Q 013050          159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL  238 (450)
Q Consensus       159 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~  238 (450)
                      +++.|+++|+++.+|+++...+........ +.+......+....|...+.+.+.+++.+++..       +.++|+.|+
T Consensus       169 ~~~~a~~~g~~v~~Hae~~~~~~~~~~~~~-~~G~~~~~~~~~~~p~~~e~~av~~~~~la~~~-------g~~~hi~H~  240 (461)
T 3sfw_A          169 TLIRAKELGALVQVHAENGDVLDYLTKQAL-AEGNTDPIYHAYTRPPEAEGEATGRAIALTALA-------DAQLYVVHV  240 (461)
T ss_dssp             HHHHHHHHTCEEEEECSCHHHHHHHHHHHH-HTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHT-------TCEEEECSC
T ss_pred             HHHHHHhcCCEEEEEcCCHHHHHHHHHHHH-hcCCCChhHhcccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEec
Confidence            999999999999999998876553322211 233334445667889999999999999999977       999999999


Q ss_pred             CChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC---CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC
Q 013050          239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD---GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT  315 (450)
Q Consensus       239 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~  315 (450)
                      ++. +.++.++.+++.|+.+++++||+++.++.+.+..   .+..++++||++...++..+|+++..|..++++||+.|+
T Consensus       241 s~~-~~l~~i~~ak~~G~~vt~e~~ph~l~l~~~~~~~~~~~~~~~~~~Pplr~~~~~~aL~~~l~~G~~~~i~sD~~p~  319 (461)
T 3sfw_A          241 SCA-DAVRRIAEAREKGWNVYGETCPQYLVLDITALEKPDFEGAKYVWSPPLREKWNQDVLWSALKNGILQTVGSDHCPF  319 (461)
T ss_dssp             CSH-HHHHHHHHHHHTTCEEEEEECHHHHHCCGGGGGCTTTGGGGGCCSSCCCCTHHHHHHHHHHHTTSSCEECCCBCCC
T ss_pred             CcH-HHHHHHHHHHhcCCcEEEeeccceEEEcHHHhcCccccCCcEEEcCCCCChHHHHHHHHHHhcCCceEEECCCCCC
Confidence            998 9999999999999999999999999999888765   467789999999999999999999999999999999998


Q ss_pred             Chh-hhcccCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCC
Q 013050          316 VPE-LKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPE  392 (450)
Q Consensus       316 ~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~  392 (450)
                      ... .+....+.|...+.|+.+.+..++.+++.. ...++|++++++++|.|||+++|+ ++.|+|++|+.|||+|+|.+
T Consensus       320 ~~~~~k~~~~~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~~~~G~l~~G~~Ad~~~~d~~  399 (461)
T 3sfw_A          320 NFSGQKELGRRDFTKIPNGGPIIEDRMTILFSEGVRKGKISLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFDPT  399 (461)
T ss_dssp             CTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHHTTTTTSSCHHHHHHHHTHHHHHHHTCTTTSSSCSTTSBCCEEEEEEE
T ss_pred             CchhhhhcccCCHhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHcCCCCCCCccCCCCcCCEEEEcCC
Confidence            743 333344689999999999999999988754 455699999999999999999999 78999999999999999999


Q ss_pred             CceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050          393 AEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA  449 (450)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~  449 (450)
                      .+++++.+ ++.+... ++||.|..+.++|..|||+|++||++|++++. ..|++|++
T Consensus       400 ~~~~~~~~-~~~~~~~-~sp~~g~~~~~~v~~t~v~G~~v~~~g~~~~~~~~G~~~~~  455 (461)
T 3sfw_A          400 VQRTISVE-THHMNVD-YNPFEGMQVHGDVISVLSRGAFVVRNKQFVGHAGAGRYVKR  455 (461)
T ss_dssp             EEEECCTT-TCCSSSS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCC
T ss_pred             CCEEEchH-HcccccC-CCCCCCCEecceEEEEEECCEEEEECCeeccCCCCceEecC
Confidence            88888887 8888888 99999999999999999999999999999976 47999976

>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli}

Probab=100.00  E-value=2.3e-56  Score=439.03  Aligned_cols=426  Identities=37%  Similarity=0.646  Sum_probs=357.5

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      ..++|+|+||+|++|++..+.     ..++||++|++|+|||||+|+|+..++..+++++....+.++++|||+++++++
T Consensus        39 ~~~~v~i~~g~I~~i~~~~~~-----~~~~id~~g~~v~PG~iD~H~H~~~~g~~~~~~~~~~~~~~~~~G~Tt~~~~~~  113 (473)
T 3e74_A           39 RVVDIAVKGGKIAAIGQDLGD-----AKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPL  113 (473)
T ss_dssp             EECEEEEETTEEEEEESCCCC-----EEEEEECTTCEEEECEEEEEECC---------CHHHHHHHHHHTTEEEEEECCS
T ss_pred             eeeeEEEECCEEEEEcCCCCC-----CCcEEECCCCEEecCEEEEecccCCCCCCcHHHHHHHHHHHHhCCEEEEEcCcc
Confidence            357899999999999986432     267999999999999999999999888888889999999999999999999975


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCC----CCCCCCCHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI----NDFPMTNASHIK  157 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~l~  157 (450)
                      ++.|.....+.+....+.......+++..++.....+   .+.+.++.+.|+.++|.|+.+.+.    +..+..+.+.+.
T Consensus       114 ~t~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~---~~~l~~l~~~G~~~~K~~~~~~~~~~~~~~~~~~~~~~l~  190 (473)
T 3e74_A          114 NQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYN---IDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFF  190 (473)
T ss_dssp             SSSSCSCSHHHHHHHHHHHTTTCSSEEEECEECCTTC---TTTHHHHHHHTCSCEEEEC------------CCCCHHHHH
T ss_pred             cCCCCcccHHHHHHHHHHhccCCeEEEEEEeecccch---HHHHHHHHHcCCCEEEEeccccCCcccccccCCCCHHHHH
Confidence            6777777888888877777777788998887665543   456778888999999999875432    234567889999


Q ss_pred             HHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEe
Q 013050          158 EGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH  237 (450)
Q Consensus       158 ~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h  237 (450)
                      ++++.|+++|+++.+|+++...+... .....+.+......+....|...+...+.+++.+++..       +.++|+.|
T Consensus       191 ~~~~~a~~~g~~v~~H~e~~~~~~~~-~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~l~la~~~-------g~~lhi~H  262 (473)
T 3e74_A          191 KGAQKLGELGQPVLVHCENALICDEL-GEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVA-------GCRLHVCH  262 (473)
T ss_dssp             HHHHHHHHHTCCEEEECSCHHHHHHH-HHHHHHHTCCSHHHHHHTSCHHHHHHHHHHHHHHHHHH-------TCCEEECS
T ss_pred             HHHHHHHhcCCeEEEEecCHHHHHHH-hhHHHhcCCcChhhcccCCCHHHHHHHHHHHHHHHHHh-------CCcEEEEe
Confidence            99999999999999999887544321 11111333444455667899999999999999999987       89999999


Q ss_pred             cCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCCh
Q 013050          238 LSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVP  317 (450)
Q Consensus       238 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~  317 (450)
                      +++. ++++.++++++.|+.++++++|+++.++.+.+...+..++++||++...++..+|++++.|+.++++||+.|...
T Consensus       263 vst~-~~l~li~~ak~~G~~vt~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~~~~i~tDh~p~~~  341 (473)
T 3e74_A          263 VSSP-EGVEEVTRARQEGQDITCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPP  341 (473)
T ss_dssp             CCSH-HHHHHHHHHHHTTCCEEEEECTHHHHCCHHHHHHHCGGGCCSSCCCCHHHHHHHHHHHHTTCCCEECCCBCCCCT
T ss_pred             CCCH-HHHHHHHHHHHcCCCeEEEEchHhhhcCHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHhCCCCcEEEeCCCCCCH
Confidence            9998 999999999999999999999999999988877777888999999999999999999999999999999999988


Q ss_pred             hhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCcee
Q 013050          318 ELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE  396 (450)
Q Consensus       318 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~  396 (450)
                      ..+   .++|+..+.|+.+.+..++.++.. ..+.++|++++++++|.|||+++|+++.|+|++|+.|||||+|.+.+++
T Consensus       342 ~~k---~~~f~~~~~G~~g~e~~l~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~~~G~l~~G~~AD~vv~d~~~~~~  418 (473)
T 3e74_A          342 EMK---AGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYV  418 (473)
T ss_dssp             TTT---CSCTTTSCCCBCCGGGHHHHHHHHHTTTTCCCHHHHHHHHTHHHHHHTTCTTSSCCSTTSBCCEEEEESSCCEE
T ss_pred             HHc---ccChhhcCCCcccHHhHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCccCCCCccCEEEEeCCCCEE
Confidence            776   457999999999999999998874 4677899999999999999999999658999999999999999999899


Q ss_pred             eCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEe-cCcccCCCCCccccc
Q 013050          397 LDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK-EGNHAPAACGSPILA  449 (450)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~-~g~~~~~~~g~~~~~  449 (450)
                      +..+ ++.+... ++||.|..+.++|..||++|++||+ ||+++++..|++|++
T Consensus       419 ~~~~-~~~~~~~-~sp~~g~~~~g~v~~t~v~G~~v~~~~g~~~~~~~G~~~~~  470 (473)
T 3e74_A          419 LTND-DLEYRHK-VSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILK  470 (473)
T ss_dssp             CCGG-GCCSSSC-CCTTTTCEESCEEEEEEETTEEEEETTTBCCSCCCCCEECC
T ss_pred             ECHH-HccccCC-CCCCCCCEEeeEEEEEEECCEEEEecCCeEccCCCceeecC
Confidence            8877 7888888 9999999999999999999999999 999998889999986

>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.2e-53  Score=413.74  Aligned_cols=407  Identities=25%  Similarity=0.387  Sum_probs=347.6

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      .+++|+|+||+|++|++..+.+   .+.++||++|++|+|||||+|+|+..++....+++....+.++++|||++++++ 
T Consensus        16 ~~~~v~i~~g~I~~i~~~~~~~---~~~~~id~~g~~v~PG~iD~H~H~~~~g~~~~~~~~~~~~~~~~~G~t~~~~~~-   91 (424)
T 3gri_A           16 QQADILIDGKVIKQIAPAIEPS---NGVDIIDAKGHFVSPGFVDVHVHLREPGGEYKETIETGTKAAARGGFTTVCPMP-   91 (424)
T ss_dssp             EECEEEEETTEEEEEESCCCCC---SSCEEEECTTCEEEECEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECS-
T ss_pred             eeeeEEEECCEEEEecCCCCCC---CCCeEEECCCCEEEeCeEEeeecCCCCCCCCHHHHHHHHHHHHhCCEEEEeECc-
Confidence            4689999999999999865432   367899999999999999999999988877788899999999999999999998 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC-CccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL  160 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (450)
                      ++.+.....+.+....+.......+++..++.+... ..+..+.+.++.+.|+.++..       ++.+..+.+.+++++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~~~~~~-------~~~~~~~~~~l~~~~  164 (424)
T 3gri_A           92 NTRPVPDSVEHFEALQKLIDDNAQVRVLPYASITTRQLGKELVDFPALVKEGAFAFTD-------DGVGVQTASMMYEGM  164 (424)
T ss_dssp             CSSSCSCSHHHHHHHHHHHHHHCSSEECCCEESBGGGCSSSBCCHHHHHTTTCCCEEE-------CSSCCCSHHHHHHHH
T ss_pred             CCCCCCChHHHHHHHHHHhccCCCceEEEEEEEecCCCcchHHHHHHHHhcCcEEEec-------CCcCcCCHHHHHHHH
Confidence            777777778888777777766555666666555433 233455677888889888754       333467899999999


Q ss_pred             HHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050          161 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD  240 (450)
Q Consensus       161 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~  240 (450)
                      +.|+++|+++.+|+++...+.....    +.+......+....|...+...+.+.+.+++..       +.++|+.|+++
T Consensus       165 ~~a~~~g~~v~~H~e~~~~~~~~~~----~~g~~~~~~~~~~~p~~~E~~~v~r~~~la~~~-------g~~~~i~H~s~  233 (424)
T 3gri_A          165 IEAAKVNKAIVAHCEDNSLIYGGAM----HEGKRSKELGIPGIPNICESVQIARDVLLAEAA-------GCHYHVCHVST  233 (424)
T ss_dssp             HHHHHHTCCEEECCCCGGGCTTCCE----ESSHHHHHHTCCEECTHHHHHHHHHHHHHHHHH-------TCCEEECSCCC
T ss_pred             HHHHhcCCEEEEeCCCHHHHhhhhh----hcCccchhhCCCCCCHHHHHHHHHHHHHHHHHh-------CCcEEEEeCCC
Confidence            9999999999999988775442221    223333445567788889999999999999987       99999999999


Q ss_pred             hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050          241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK  320 (450)
Q Consensus       241 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~  320 (450)
                      . +.++.++++++.|+.+++++||+++.++.+.+..++..++++||++...++..+|+++..|..++++||+.|+....+
T Consensus       234 ~-~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~igtDhap~~~~~k  312 (424)
T 3gri_A          234 K-ESVRVIRDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKMNPPLRSTEDREALLEGLLDGTIDCIATDHAPHARDEK  312 (424)
T ss_dssp             H-HHHHHHHHHHHTTCCEEEEECHHHHHCCGGGCCSSCGGGCCSSCCCCHHHHHHHHHHHHTTSSCEECCCBCCCCHHHH
T ss_pred             H-HHHHHHHHHHHcCCCEEEEecHHHHhcCHHHHhCcCceEEEeCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHc
Confidence            8 999999999999999999999999999999888888899999999999999999999999999999999999998877


Q ss_pred             cccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCC
Q 013050          321 LLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN  399 (450)
Q Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~  399 (450)
                      .   .+|...+.|+.+.+..++.++.. ..+.++|++++++++|.|||+++|+ +.|+|++|+.|||+|+|.+.++++..
T Consensus       313 ~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~-~~g~l~~G~~Ad~~~~d~~~~~~~~~  388 (424)
T 3gri_A          313 A---QPMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFNL-EYGTLKENGYADLTIIDLDSEQEIKG  388 (424)
T ss_dssp             T---SCTTTSCCCCCCTTTHHHHHHHHHTTTSSCCHHHHHHHHTHHHHHHTTC-SCSCCCTTSBCCEEEEESSCCEECCG
T ss_pred             c---CCHhHCCCCCccccccHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCC-CCCcccCCCcCCEEEEcCCCCEEEch
Confidence            4   57999999999999999998865 4566799999999999999999999 68999999999999999998899887


Q ss_pred             CCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCc
Q 013050          400 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN  437 (450)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~  437 (450)
                      + ++.+... ++||.|..+.++|.+||++|++||++|+
T Consensus       389 ~-~~~~~~~-~sp~~g~~~~g~v~~t~~~G~~v~~~g~  424 (424)
T 3gri_A          389 E-DFLSKAD-NTPFIGYKVYGNPILTMVEGEVKFEGDK  424 (424)
T ss_dssp             G-GCSSSCC-CCTTTTCEESCEEEEEEETTEEEEEC--
T ss_pred             h-hcccccC-CCCcCCCEEeeeEEEEEECCEEEEeCCC
Confidence            7 7888888 9999999999999999999999999985

>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans}

Probab=100.00  E-value=5.2e-53  Score=414.84  Aligned_cols=412  Identities=38%  Similarity=0.671  Sum_probs=354.5

Q ss_pred             ceeEEEeCCEEEEecc--CCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCC
Q 013050            3 KRAVEIKEGNIISIVS--EEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMP   80 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~--~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~   80 (450)
                      .++|+|+||+|++|++  ..+.    .+.++||++|++|+|||||+|+|+..++....+++....+.++++|||++++++
T Consensus        23 ~~~v~i~~g~I~~i~~~~~~~~----~~~~~id~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~Gvtt~~~~~   98 (448)
T 3hm7_A           23 RADVAIRNGIVSAITEPGSISS----DDGPAIDGTGLHLFPGMVDVHVHFNEPGRTEWEGFASGSKSLAAGGVTTYFDMP   98 (448)
T ss_dssp             EEEEEEETTEEEEEESTTCSCT----TSSCEEECTTCEEEECEEEEEECCCTTTSGGGCCSHHHHHHHHTTTEEEEEECS
T ss_pred             EeEEEEECCEEEEeeCccCCCC----CCCeEEECCCCEEecCEEEeeeccCCCCCCcHhHHHHHHHHHHhCCEEEEEeCC
Confidence            5789999999999998  3321    367899999999999999999999988777778889999999999999999997


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHH
Q 013050           81 LNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL  160 (450)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (450)
                      +++.+.....+.+....+.......+++..+++..+..   .+.+.++.+.|+.+++.++.+...+..+..+.+.+.+.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~g~~~~~~~l~~~~~~~~~~~~~~~l~~~l  175 (448)
T 3hm7_A           99 LNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVPGN---IDHLQDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKGM  175 (448)
T ss_dssp             SSSSSCSCSHHHHHHHHTHHHHHCSSEEEEEEECCTTC---GGGHHHHHHTTCSEEEEESSSCSSSSSCCCCHHHHHHHH
T ss_pred             CCCCCCCChHHHHHHHHHHhccCCeeEEEEEEEecccC---HHHHHHHHHcCCCEEEEeeccccCCccCcCCHHHHHHHH
Confidence            56666677788887777766665677888877665443   556777788999999998877543333456899999999


Q ss_pred             HHHHhcCCcEEEecCChhhhhh---hhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEe
Q 013050          161 SVLARYKRPLLVHAEMEKGSER---HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH  237 (450)
Q Consensus       161 ~~a~~~g~~v~~H~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h  237 (450)
                      +.|+++|+++.+|+++...+..   .+.    +.+......++...|...+.+.+.+++.++++.       +.++|+.|
T Consensus       176 ~~a~~~g~~v~vH~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~p~~~e~~av~~~~~la~~~-------g~~~~i~H  244 (448)
T 3hm7_A          176 KKIAALGSILAVHAESNEMVNALTTIAI----EEQRLTVKDYSEARPIVSELEAVERILRFAQLT-------CCPIHICH  244 (448)
T ss_dssp             HHHHHHTCCEEEECCCHHHHHHHHHHHH----HTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHHH-------TCCEEECC
T ss_pred             HHHHhcCCEEEEEeCCHHHHHHHHHHHH----hcCCcChhhccccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEe
Confidence            9999999999999998776542   233    333444555667889999999999999999987       89999999


Q ss_pred             cCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCCh
Q 013050          238 LSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVP  317 (450)
Q Consensus       238 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~  317 (450)
                      +++. +.++.++++++.|..+++++||+++.++.+.+...+..++++||++...++..+|+++..|..++++||+.|++.
T Consensus       245 ~s~~-~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~g~~~~i~tD~~p~~~  323 (448)
T 3hm7_A          245 VSSR-KVLKRIKQAKGEGVNVSVETCPHYLLFSLDEFAEIGYLAKCAPPLRERQEVEDLWDGLMAGEIDLISSDHSPSLP  323 (448)
T ss_dssp             CCCH-HHHHHHHHHHHTTCCEEEEECHHHHHCCHHHHHHHCSTTCCSSCCCCHHHHHHHHHHHHHTCCCEECCCBCCCCG
T ss_pred             CCCH-HHHHHHHHHHhcCCCEEEEechHHHccCHHHhcCCCCeEEEcCCCCCHHHHHHHHHHHhcCCccEEEeCCCCCCH
Confidence            9998 999999999999999999999999999988877778889999999999999999999999999999999999988


Q ss_pred             hhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCce
Q 013050          318 ELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEF  395 (450)
Q Consensus       318 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~  395 (450)
                      ..+...  +|...+.|+.+.+..++.+++.. ...++|++++++++|.|||+++|+ ++.|+|++|+.|||+|+|.+.++
T Consensus       324 ~~k~~~--~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~~A~~~g~~~~~g~l~~G~~Ad~~~~d~~~~~  401 (448)
T 3hm7_A          324 QMKTGK--TIFEVWGGIAGCQNTLAVMLTEGYHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNESY  401 (448)
T ss_dssp             GGGCCS--STTTSCCCBCCTTTHHHHHHHHTTTTTCCCHHHHHHHHTHHHHHHHTCTTTSSCCSTTSBCCEEEEEEEEEE
T ss_pred             HHcccC--CHhhCCCCCccHHHHHHHHHHHHHhcCCcCHHHHHHHHhHHHHHHcCCCCCCCcccCCCcCCEEEEeCCCCE
Confidence            876432  58889999999999999988754 477899999999999999999999 78999999999999999999889


Q ss_pred             eeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCc
Q 013050          396 ELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN  437 (450)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~  437 (450)
                      +++.+ ++.+... ++||.|..+.++|..||++|++||++++
T Consensus       402 ~~~~~-~~~~~~~-~sp~~g~~~~g~v~~t~~~G~~v~~~~~  441 (448)
T 3hm7_A          402 TLNAS-DLYYRHP-ISPYVGQRFRGKVKHTICQGKHVYQDHE  441 (448)
T ss_dssp             ECCGG-GCCSSSC-CCTTTTCEEEEEEEEEEETTEEEEECC-
T ss_pred             EEChH-hcccccC-CCCCCCCEEEEEEEEEEECCEEEEECCC
Confidence            88877 7888888 9999999999999999999999999986

>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}

Probab=100.00  E-value=8e-52  Score=404.00  Aligned_cols=408  Identities=27%  Similarity=0.430  Sum_probs=345.1

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      .+++|+|+||+|++|++..+.    .+.++||++|++|+|||||+|+|+..++....+.+....+.++++|||++++++ 
T Consensus        18 ~~~~v~i~~g~I~~i~~~~~~----~~~~~id~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~-   92 (428)
T 3mpg_A           18 VATDLLVQDGKIAKVAENITA----DNAEVIDVNGKLIAPGLVDVHVHLREPGGEHKETIETGTLAAAKGGFTTICAMP-   92 (428)
T ss_dssp             EEEEEEEESSBEEECCSSCCC----TTSEEEECTTCEEEECEEEEEECCCTTTCTTTCCHHHHHHHHHHHTEEEEEECS-
T ss_pred             eeeeEEEECCEEEEecCCCCC----CCCeEEECCCCEEeeCEEEEeeccCCCCCCchhHHHHHHHHHHhCCeEEEEeCC-
Confidence            457999999999999986542    367899999999999999999999888777778899999999999999999998 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC-ccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL  160 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (450)
                      .+.+.......+....+.........+..++.+.... .+....+.++.+.|+.++..       .+.+..+.+.+++++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~G~~~~~~-------~~~~~~~~~~l~~~~  165 (428)
T 3mpg_A           93 NTRPVPDCREHMEDLQNRIKEKAHVNVLPYGAITVRQAGSEMTDFETLKELGAFAFTD-------DGVGVQDASMMLAAM  165 (428)
T ss_dssp             CSSSCSCSHHHHHHHHHHHHHHCSSEEEECEESBGGGCSSSBCCHHHHHHTTCCCEEC-------TTSCCCCHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHhcccCCcEEEEEeeEecCCCcchHHHHHHHHHhCCEEEEC-------CCcCCCCHHHHHHHH
Confidence            7777777777777777766655566666665554332 23455677888889887743       333467889999999


Q ss_pred             HHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050          161 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD  240 (450)
Q Consensus       161 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~  240 (450)
                      +.|+++|+++.+|+++...+.....    +.+......+....|...+...+.+.+.+++..       +.++|+.|+++
T Consensus       166 ~~a~~~g~~v~vH~~~~~~~~~~~~----~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~-------g~~~~i~H~s~  234 (428)
T 3mpg_A          166 KRAAKLNMAVVAHCEENTLINKGCV----HEGKFSEKHGLNGIPSVCESVHIARDILLAEAA-------DCHYHVCHVST  234 (428)
T ss_dssp             HHHHHTTCCEEECCCCGGGCTTCSE----ETTHHHHHTTCCEECTHHHHHHHHHHHHHHHHH-------TCCEEECSCCC
T ss_pred             HHHHhcCCeEEEECCChhHhhhHHh----hcCccchhhCcCCCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCC
Confidence            9999999999999988765442222    222333344556788888999999999999977       89999999999


Q ss_pred             hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050          241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK  320 (450)
Q Consensus       241 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~  320 (450)
                      . +.++.++++++.|+.+++++||+++.++.+.+...+..++++||++....+..+|+++.+|...+++||+.|++...+
T Consensus       235 ~-~~~~~i~~a~~~G~~v~~e~~p~~l~l~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~tDh~p~~~~~k  313 (428)
T 3mpg_A          235 K-GSVRVIRDAKRAGIKVTAEVTPHHLVLCEDDIPSADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEK  313 (428)
T ss_dssp             H-HHHHHHHHHHHTTCCEEECBCHHHHHCCGGGCCSSCGGGCCSSCCCCHHHHHHHHHHHHHTSSCCBCCCBCCCCTTGG
T ss_pred             H-HHHHHHHHHHhcCCCEEEEEchHHhEECHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHhCCCCcEEEcCCCCCCHHHc
Confidence            8 999999999999999999999999999999888888899999999999999999999999999999999999987776


Q ss_pred             cccCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCC
Q 013050          321 LLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN  399 (450)
Q Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~  399 (450)
                      ..   .|...+.|+.+.+..++.++... ...++|++++++++|.|||++||++ .|+|++|+.|||+|+|.+.++++..
T Consensus       314 ~~---~~~~~p~g~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~-~g~i~~G~~Ad~~~~d~~~~~~~~~  389 (428)
T 3mpg_A          314 AQ---GIERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFGLE-AGRLKEGRTADITIIDLEQEEEIDP  389 (428)
T ss_dssp             GS---CTTTSCSCCCCTTTHHHHHHHHTTTTTSSCHHHHHHTTTHHHHHHHTCS-CSCCCTTSBCCEEEEESSCCEECCG
T ss_pred             cc---CHhhCCCCceehhhHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC-CccccCCCcCCEEEEcCCCCEEEch
Confidence            43   58899999999999999988764 4567999999999999999999996 9999999999999999998888877


Q ss_pred             CCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc
Q 013050          400 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA  439 (450)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~  439 (450)
                      + ++.+... ++||.+..+.++|..|||+|++||++|+++
T Consensus       390 ~-~~~~~~~-~~~~~g~~~~g~v~~t~v~G~~v~~~g~~~  427 (428)
T 3mpg_A          390 T-TFLSKGK-NTPFAGWKCQGWPVMTIVGGKIAWQKESAL  427 (428)
T ss_dssp             G-GCSSSCC-CCSCTTCEECCEEEEEEETTEEEEECSCC-
T ss_pred             h-hccccCC-CCCcCCCEEeeEEEEEEECCEEEEeCCccc
Confidence            7 7777777 999999999999999999999999999875

>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A*

Probab=100.00  E-value=4e-51  Score=403.24  Aligned_cols=429  Identities=25%  Similarity=0.350  Sum_probs=336.4

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC--CCCcccchHHHHHHHHhCCceEEEeCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMP   80 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~--~~~~~~~~~~~~~~~~~~GvT~~~~~~   80 (450)
                      +++|+|+||||++|++..+.+   .+.++||++|++|+|||||+|+|+..+  +....+++....+.++++|||++++++
T Consensus        17 ~~~v~I~~g~I~~ig~~~~~~---~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~   93 (458)
T 1gkp_A           17 KADIYAEGETITRIGQNLEAP---PGTEVIDATGKYVFPGFIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMC   93 (458)
T ss_dssp             ECEEEESSSBCCEEESCCCCC---TTCEEEECTTSEEEECEEEEEECSSCEETTEECSCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             EeeEEEECCEEEEecCCCCCC---CCCeEEECCCCEEecCEEecccCCCcCCCCCcCHhHHHHHHHHHHhCCccEEEeCC
Confidence            578999999999999754321   356799999999999999999999765  222456788888888999999999986


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHH
Q 013050           81 LNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL  160 (450)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (450)
                       ...+.....+.+....+.......++++.+......+.+..+.+.++.+.|+..++.++.+.+   ...++.+.+.+++
T Consensus        94 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~l~~~~  169 (458)
T 1gkp_A           94 -CPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFKIFLSYKN---FFGVDDGEMYQTL  169 (458)
T ss_dssp             -CCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECCCCCTTHHHHHHHHHHTTCCEEEEEECSTT---TTBCCHHHHHHHH
T ss_pred             -CCCCCCCHHHHHHHHHHHhccCceeeEEEEEeecCCchhhHHHHHHHHHhCCCEEEEEeccCC---CcCCCHHHHHHHH
Confidence             443434445555555444444556666666544444445577888888899999988776532   2357889999999


Q ss_pred             HHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050          161 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD  240 (450)
Q Consensus       161 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~  240 (450)
                      +.|+++++++.+|+++...+....... ...+......+....|...+.+.+.+++.++...       +.++|+.|+++
T Consensus       170 ~~a~~~~~~v~~H~e~~~~~~~~~~~~-~~~G~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-------g~~~~~~H~~~  241 (458)
T 1gkp_A          170 RLAKELGVIVTAHCENAELVGRLQQKL-LSEGKTGPEWHEPSRPEAVEAEGTARFATFLETT-------GATGYVVHLSC  241 (458)
T ss_dssp             HHHHHHTCEEEEEESCHHHHHHHHHHH-HHTTCCSGGGTTTTSCHHHHHHHHHHHHHHHHHH-------TCEEEECSCCS
T ss_pred             HHHHhcCCEEEEEcCCHHHHHHHHHHH-HhcCCCChhhccCcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCC
Confidence            999999999999998766544322110 0112222223344677777888888999888877       89999999998


Q ss_pred             hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC---CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCCh
Q 013050          241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD---GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVP  317 (450)
Q Consensus       241 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~  317 (450)
                      . +.++.++.+++.|..+++++||+++.++...+..   .+..+.+.|+++....++.++++++.|+.++++||+.|++.
T Consensus       242 ~-~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~p~r~~~~~~~l~~~~~~G~~~~~gtD~~~~~~  320 (458)
T 1gkp_A          242 K-PALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDT  320 (458)
T ss_dssp             H-HHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHHHHHTTCCSSCCCCTHHHHHHHHHHHTTSSCEEECCBCCCCH
T ss_pred             H-HHHHHHHHHHHcCCeEEEEecccceeeCHHHhcccccCCcceEEeCCCCCHHHHHHHHHHHhcCCeeEEECCCCCCCH
Confidence            7 8889999999999999989999988887655422   12234457889888889999999999999999999999887


Q ss_pred             hhhcccCCCccccCCCCcchhhHHHHHHHHHHhcC-CCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCce
Q 013050          318 ELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEF  395 (450)
Q Consensus       318 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g-ls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~  395 (450)
                      ..+....+.|+..+.|+.+.+..++.+++...+.+ +|++++++++|.|||++||+ +++|+|++|++|||||+|.+..+
T Consensus       321 ~~k~~~~~~~~~~~~g~~g~~~~l~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~  400 (458)
T 1gkp_A          321 EQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYDPQYRG  400 (458)
T ss_dssp             HHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTSSSCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEETTCCE
T ss_pred             HHhhcccCChhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHhhCHHHHhCCCCCCCcCCCCCcCCEEEEeCCCCe
Confidence            65554445788888899999988888877665554 99999999999999999999 78999999999999999999988


Q ss_pred             eeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCC-Cccccc
Q 013050          396 ELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAAC-GSPILA  449 (450)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~-g~~~~~  449 (450)
                      +++.. ++.+... ++||.+....++|..|||+|++||++|+++++.. ||+|++
T Consensus       401 ~~~~~-~~~~~~~-~~p~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~  453 (458)
T 1gkp_A          401 TISVK-TQHVNND-YNGFEGFEIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLLRR  453 (458)
T ss_dssp             ECCGG-GCCSSSS-CCTTTTCEESCEEEEEEETTEEEEETTEECCCTTCCCBCCC
T ss_pred             EEchH-HcccccC-CCccCCCEEeeEEEEEEECCEEEEECCeeccCCCCceeccC
Confidence            88766 6666666 8999999999999999999999999999998754 999986

>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A*

Probab=100.00  E-value=1.2e-51  Score=412.31  Aligned_cols=425  Identities=25%  Similarity=0.379  Sum_probs=335.8

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC---CCcccchHHHHHHHHhCCceEEEeC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG---RTEWEGFPSGTKAAAAGGITTLIDM   79 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~---~~~~~~~~~~~~~~~~~GvT~~~~~   79 (450)
                      +++|+|+||+|++|++..+.+   .+.++||+.|++|+|||||+|+|+..+.   ....+++....+.++++||||++++
T Consensus        20 ~~~v~I~~g~I~~Ig~~~~~~---~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~~e~~~~~~~~~l~~GvTtv~d~   96 (559)
T 2fty_A           20 AAEIAVNNGKVQLIAASIDPS---LGSEVIDAEGAFITPGGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAF   96 (559)
T ss_dssp             ECEEEEETTEEEEEESCCCGG---GEEEEEECTTCEEEECEEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEE
T ss_pred             eeeEEEECCEEEEecCCCCCC---CCCeEEeCCCCEEEcCEEeeccCcCccccccCCCHHHHHHHHHHHHhCcEEEEEEC
Confidence            578999999999999754311   2457999999999999999999998762   3356778888999999999999999


Q ss_pred             CCCCC---CCCC-cHHHHHHHHHHHhc-CCceEEEEeccccCC---Ccc---ch-HHHHHHH-HcCCcEEEEecccCCCC
Q 013050           80 PLNSD---PSTI-STETLKLKVDAAEK-RIYVDVGFWGGLVPE---NAY---NA-SALEALL-NAGVLGLKSFMCPSGIN  146 (450)
Q Consensus        80 ~~~~~---~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~---~~-~~~~~~~-~~g~~~~~~~~~~~~~~  146 (450)
                      + +..   +... ..+.+....+.... ...+++.++......   ..+   .+ +.+.+++ +.|+.+++.++.+.+  
T Consensus        97 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~g~~l~~~~~~l~~~~G~~~iki~~~~~~--  173 (559)
T 2fty_A           97 S-TQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPG--  173 (559)
T ss_dssp             E-ECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEECCCCCSSHHHHHHHHHHHHHHHHHHHCCCEEEEESSSTT--
T ss_pred             c-CcccCCcchHHHHHHHHHHHHHHHhhcceeEEEeeeeeccCcCCCchhhhhHHHHHHHHHHHCCCCEEEEEecCCC--
Confidence            7 433   2222 22222000022222 345677666544333   222   34 5677777 679999999876642  


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhh---hhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhc
Q 013050          147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH---VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR  223 (450)
Q Consensus       147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~  223 (450)
                        ..++.+.++++++.|+++|+++.+|+++...+...   +...|    ......+....|...+.+.+.+++.+++.. 
T Consensus       174 --~~~s~e~l~~~~~~A~~~g~~v~~H~e~~~~i~~~~~~~~~~G----~~~~~~~~~~~p~~~E~~av~~~i~la~~~-  246 (559)
T 2fty_A          174 --LQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQG----LTDAYYHGVSRPSIVEGEATNRAITLATTM-  246 (559)
T ss_dssp             --TBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTT----CCSTTHHHHTSCHHHHHHHHHHHHHHHHHT-
T ss_pred             --CcCCHHHHHHHHHHHHhCCCEEEEECCChHHHHHHHHHHHhcC----CCChhhcccCCCHHHHHHHHHHHHHHHHHh-
Confidence              36789999999999999999999999887665432   22222    222223445788888999999999999976 


Q ss_pred             cCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccccc-----------------------------
Q 013050          224 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI-----------------------------  274 (450)
Q Consensus       224 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~-----------------------------  274 (450)
                            +.++|++|+++. +.++.++++++.|+.+++++||+++.++.+.+                             
T Consensus       247 ------g~~vhi~H~s~~-~~~~~i~~ak~~G~~Vt~e~~p~~l~l~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~  319 (559)
T 2fty_A          247 ------DTPILFVHVSSP-QAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPD  319 (559)
T ss_dssp             ------TCCEEECSCCCH-HHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGSCC--------CCSCCGGGCSSSTTTCTT
T ss_pred             ------CCCEEEEcCCCH-HHHHHHHHHHHcCCceEEeecCcccccCHHHhhccccccccccccccCccccccccccccC
Confidence                  899999999987 88999999999999999999999998876555                             


Q ss_pred             CC-CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh-------------cccCCCccccCCCCcchhhH
Q 013050          275 PD-GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK-------------LLDEGNFLKAWGGISSLQFV  340 (450)
Q Consensus       275 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~~  340 (450)
                      .. .+..++++||++....+..++++++.|+.++++||+.|++...+             ....++|...+.|+.+++..
T Consensus       320 ~~~~~~~~~~~PplR~~~~~~~l~~~l~~G~~~~igTD~~p~~~~~k~~~~~k~~~~~~~~~~~~~f~~~~~G~~g~e~~  399 (559)
T 2fty_A          320 DRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTR  399 (559)
T ss_dssp             CTTGGGGGCCSSCCCCTTSHHHHHHHHHTTSCSEECCCBCCCBSSCCSSTTBGGGGEEGGGTEESCGGGSCCCBCCTTTH
T ss_pred             ccccccCcEECCCCCCHHHHHHHHHHHhcCceEEEEeCCCCCChhhccccccccccccccccccCCHhhCCCCCccHHHH
Confidence            11 24557889999998899999999999999999999998876532             12246899999999999999


Q ss_pred             HHHHHHHHH-hcCC-CHHHHHHHHhhchhHHhCC-CCCCccccC-CCccEEEEeCCC--------ceeeCCCCCcccCCC
Q 013050          341 LPVTWSYGR-KYGV-TLEQLASWWSERPAKLAGQ-VSKGAIAIG-NHADLVVWEPEA--------EFELDNDHPVHMKHP  408 (450)
Q Consensus       341 ~~~~~~~~~-~~gl-s~~~al~~aT~~~A~~lg~-~~~G~I~~G-~~ADlvv~d~~~--------~~~~~~~~~~~~~~~  408 (450)
                      ++.++.... ..++ |++++++++|.|||++||+ ++.|+|++| +.|||||||.+.        ++++... ++.+...
T Consensus       400 l~~ll~~~v~~~~l~~~~~~~~~~t~~~A~~lgl~~~~G~i~~G~~~ADlvv~d~~~~~~~~~~~~~~~~~~-~~~s~~~  478 (559)
T 2fty_A          400 MPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITNK-LMEHNCD  478 (559)
T ss_dssp             HHHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTTSBCCEEEECCSSCCCCCTTSCSBCCTG-GGTSSCS
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHhHHHHHHhCCCCCCceeeccCCcCCEEEEeCcccccccCCccEEEchH-HhcccCC
Confidence            998887654 4469 9999999999999999999 789999999 999999999997        7888777 7888888


Q ss_pred             CccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050          409 SISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA  449 (450)
Q Consensus       409 ~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~  449 (450)
                       ++||.|..+.++|..|||+|++||++|+++++ ..||+|++
T Consensus       479 -~sp~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~~G~~~~~  519 (559)
T 2fty_A          479 -YTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYLKR  519 (559)
T ss_dssp             -CCTTTTCBCSCCEEEEEETTEEEEETTEECGGGCCCCBCCC
T ss_pred             -CCCccCCEecceEEEEEECCEEEEECCeeccCCcCCeeecC
Confidence             99999999999999999999999999999977 56999986

>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6

Probab=100.00  E-value=5.9e-50  Score=394.92  Aligned_cols=426  Identities=29%  Similarity=0.465  Sum_probs=331.3

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC-CCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG-RTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~-~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      +++|+|+||+|++|++..+.+   .+.++||++|++|+|||||+|+|+..+. +...+++....+.++++|||+++++++
T Consensus        19 ~~~v~I~~g~I~~ig~~~~~~---~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~   95 (458)
T 1gkr_A           19 EADILVKDGKVAAISADTSDV---EASRTIDAGGKFVMPGVVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMPI   95 (458)
T ss_dssp             EEEEEEETTEEEEEESCCTTC---CEEEEEECTTCEEEECEEEEEEECCCGGGTTTSCCHHHHHHHHHHHTEEEEEECSC
T ss_pred             eeeEEEECCEEEEecCCCCCC---CCCeEEeCCCCEEecCEEEeeecccCCCCCCchhHHHHHHHHHHcCCEEEEEeCCC
Confidence            578999999999999754211   2457999999999999999999998755 445567888888999999999999862


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS  161 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (450)
                      +..+.....+.+....+...... +++..+.+...   ...+.+.++.+.|+.+++.++.+......+..+.+.++++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~~~~  171 (458)
T 1gkr_A           96 TFPPTTTLDAFLEKKKQAGQRLK-VDFALYGGGVP---GNLPEIRKMHDAGAVGFKSMMAASVPGMFDAVSDGELFEIFQ  171 (458)
T ss_dssp             SSSCSCSHHHHHHHHHHHHHHCS-SEEEEEEECCT---TCHHHHHHHHHTTCCEEEEESSCSBTTTBCBCCHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHhhhCc-eeEEEEeccCC---CCHHHHHHHHHcCCcEEEEeecccCCCCcccCCHHHHHHHHH
Confidence            33444455666666655555444 56665544332   235677888888999999887654212234678999999999


Q ss_pred             HHHhcCCcEEEecCChhhhhhh---hhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEec
Q 013050          162 VLARYKRPLLVHAEMEKGSERH---VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL  238 (450)
Q Consensus       162 ~a~~~g~~v~~H~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~  238 (450)
                      .|+++++++.+|++....+...   +...+    ......+....|..++.+.+.+++.++.+.       +.++|++|+
T Consensus       172 ~a~~~g~~v~~H~~~~~~~~~~~~~~~~~G----~~~~~~h~~~~~~~~~~~~~~~~~~la~~~-------g~~~h~~H~  240 (458)
T 1gkr_A          172 EIAACGSVIVVHAENETIIQALQKQIKAAG----GKDMAAYEASQPVFQENEAIQRALLLQKEA-------GCRLIVLHV  240 (458)
T ss_dssp             HHHHHTCEEEEECCCHHHHHHHHHHHHHTT----CCSHHHHHHHSCHHHHHHHHHHHHHHHHHH-------CCEEEECCC
T ss_pred             HHHHcCCEEEEECCCHHHHHHHHHHHhhcC----ccchhhccccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeC
Confidence            9999999999999876654322   12222    111122233356667777888988898876       889999999


Q ss_pred             CChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChh
Q 013050          239 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPE  318 (450)
Q Consensus       239 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~  318 (450)
                      ++. ..++.+.++++.|+.++++++|+++.++...+...+...+..|+++....+..++++++.|+.+++|||+.+++..
T Consensus       241 ~~~-~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~~~~~~pp~r~~~~~~~l~~~~~~G~~~~lgtD~~~~~~~  319 (458)
T 1gkr_A          241 SNP-DGVELIHQAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVE  319 (458)
T ss_dssp             CSH-HHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHHHGGGGCCSSCCCCHHHHHHHHHHHHHTCCCEECCCEECCCGG
T ss_pred             CCH-HHHHHHHHHHHCCCcEEEEEchHHheeCHHHhhccCceEEEcCCCCCHHHHHHHHHHHhCCCceEEEeCCCCCChH
Confidence            987 7888888888888889999999998877665443345567788899888899999999999999999999887765


Q ss_pred             hhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCcee
Q 013050          319 LKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFE  396 (450)
Q Consensus       319 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~  396 (450)
                      .+.....+++..+.|+.+.+..++..+.... ..++|++++++++|.|||++||+ +++|+|++||+|||||+|.+.+++
T Consensus       320 ~k~~g~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~l~~~~al~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~  399 (458)
T 1gkr_A          320 DKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDTK  399 (458)
T ss_dssp             GTGGGGTCGGGSCCCBCCTTTHHHHHHHHTGGGTSSCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEEESCCCEE
T ss_pred             HhccccCCHhHCCCCcccHHHHHHHHHHHHHHhCCCCHHHHHHHHhhhHHHHhCCCCCCccCCCCCcCCEEEEcCCcceE
Confidence            4432224677777888888887877766444 44799999999999999999999 689999999999999999998887


Q ss_pred             eCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCC-Cccccc
Q 013050          397 LDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAAC-GSPILA  449 (450)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~-g~~~~~  449 (450)
                      ++.. ++.+... ++||.|..+.++|..|||+|++||++|+++++.. |++|++
T Consensus       400 ~~~~-~~~~~~~-~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~  451 (458)
T 1gkr_A          400 VDAS-QFRSLHK-YSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVTR  451 (458)
T ss_dssp             CCGG-GCSSSCC-CCTTTTCEECCEEEEEEETTEEEEETTEECSCTTCCCBCCC
T ss_pred             EcHH-HccccCC-CCCcCCCEeeeEEEEEEECCEEEEECCccccCCCCCeecCC
Confidence            7766 6777777 8999999888999999999999999999998766 999986

>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6

Probab=100.00  E-value=1e-49  Score=393.05  Aligned_cols=427  Identities=26%  Similarity=0.394  Sum_probs=332.9

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCC-CCCC-cccchHHHHHHHHhCCceEEEeCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD-PGRT-EWEGFPSGTKAAAAGGITTLIDMP   80 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~-~~~~-~~~~~~~~~~~~~~~GvT~~~~~~   80 (450)
                      +++|+|+||||++|++..+     .+.++||++|++|+|||||+|+|+.. +... ..+++....+.++++||||+++++
T Consensus        18 ~~~v~I~~g~I~~ig~~~~-----~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~~~~~~GvTtv~~~~   92 (457)
T 1nfg_A           18 RADLGIKDGKITQIGGALG-----PAERTIDAAGRYVFPGGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFC   92 (457)
T ss_dssp             EEEEEEETTEEEEESSCCC-----CCSEEEECTTCEEEECEEEEEECCSCEETTEECSCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             eeeEEEECCEEEEecCCCC-----CCCeEEeCCCCEEccceEeeccccccCcCCCCChhhHHHHHHHHHhCCcEEEEeCC
Confidence            5789999999999987532     25689999999999999999999973 3222 456788888999999999999997


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHH
Q 013050           81 LNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL  160 (450)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (450)
                       ...+.....+.+....+.......++++.+......+.+..+.+.++.+.|+.+++.++.+..   ....+.+.+.+++
T Consensus        93 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~k~~~~~~~---~~~~~~~~~~~~~  168 (457)
T 1nfg_A           93 -QQDRGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTDSVIEELEVLPDLGITSFKVFMAYRG---MNMIDDVTLLKTL  168 (457)
T ss_dssp             -ECCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSSCCHHHHHHTTTGGGGTCCEEEEESSSTT---TTBCCHHHHHHHH
T ss_pred             -CCCCCCChHHHHHHHHHHhcccCccCEEEEEeecCCchhHHHHHHHHHHcCCCEEEEeeccCC---CCCCCHHHHHHHH
Confidence             444555556666666555555556677776655544444444566666789999999876542   1235678888999


Q ss_pred             HHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050          161 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD  240 (450)
Q Consensus       161 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~  240 (450)
                      +.+++.++++.+|++....+...+.... ..+......+....|..++.+.+.++++++++.       +.++|++|+++
T Consensus       169 ~~a~~~~~~v~~H~e~~~~~~~~~~~~~-~~g~~~~~~h~~~~~~~~~~~~~~~~~~~a~~~-------g~~~~~~H~~~  240 (457)
T 1nfg_A          169 DKAVKTGSLVMVHAENGDAADYLRDKFV-AEGKTAPIYHALSRPPRVEAEATARALALAEIV-------NAPIYIVHVTC  240 (457)
T ss_dssp             HHHHHHTCEEEEECCCHHHHHHHHHHHH-HTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHH-------TCCEEECCCCS
T ss_pred             HHHHhcCCEEEEeCCCHHHHHHHHHHHH-hcCCcchhhccccCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCc
Confidence            9999999999999987765543322100 111111122333567788888999999999987       99999999997


Q ss_pred             hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC---CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCCh
Q 013050          241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD---GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVP  317 (450)
Q Consensus       241 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~  317 (450)
                      . ..++.++++++.|..++++++++++.++.+.+..   .+..+..+|+++.......++++++.|+.+++|||+.+++.
T Consensus       241 ~-~~~~~~~~~~~~G~~v~~~~~~h~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~G~~~~~gtD~~~~~~  319 (457)
T 1nfg_A          241 E-ESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSDHCSWLF  319 (457)
T ss_dssp             H-HHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGCTTTGGGGGCCSSCCCCHHHHHHHHHHHHTTCCSCEECCBCCCCT
T ss_pred             H-HHHHHHHHHHHcCCeEEEEEchHHhEeCHHHhccccccCceeEEcCCCCCHHHHHHHHHHHhCCCeEEEecCCCCCCh
Confidence            6 7788888888888888999999998888766543   45667788888888888899999999999999999987764


Q ss_pred             h-hhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCce
Q 013050          318 E-LKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEF  395 (450)
Q Consensus       318 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~  395 (450)
                      . .+....++|+..+.|+.+.+..++..+......++|++++++++|.|||++||+ +++|+|++||+|||||+|.+..+
T Consensus       320 ~~~k~~~~~~~~~~~~g~~g~e~~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~  399 (457)
T 1nfg_A          320 KGHKDRGRNDFRAIPNGAPGVEERLMMVYQGVNEGRISLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEM  399 (457)
T ss_dssp             TTTTTTTTTCGGGSCCCBCCTTTHHHHHHHHHHTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCSTTSBCCEEEEEEEEEE
T ss_pred             HHhhhcccCCHhHCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHHHhCCCCCCcCcCCCCccCEEEEeCCCCE
Confidence            4 222222567777888888888888777545556799999999999999999999 57999999999999999999877


Q ss_pred             eeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCC-Cccccc
Q 013050          396 ELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAAC-GSPILA  449 (450)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~-g~~~~~  449 (450)
                      +++.. ++.+... ++||.|....++|..|||+|++||++|+++.... ||+|++
T Consensus       400 ~~~~~-~~~~~~~-~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~  452 (457)
T 1nfg_A          400 VIEQT-AMHNAMD-YSSYEGHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLKR  452 (457)
T ss_dssp             ECCGG-GSCSSCS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTSCCBCCC
T ss_pred             EecHH-HccCCCC-CCCccCCEecceEEEEEECCEEEEECCccccCCCCCeeeCC
Confidence            77766 6777777 8999999999999999999999999999997755 999976

>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6

Probab=100.00  E-value=1e-48  Score=390.20  Aligned_cols=427  Identities=22%  Similarity=0.291  Sum_probs=332.3

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCC--CcccchHHHHHHHHhCCceEEEeC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--TEWEGFPSGTKAAAAGGITTLIDM   79 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~--~~~~~~~~~~~~~~~~GvT~~~~~   79 (450)
                      .+++|+|+||+|++|++....+   .+.++||++|++|+|||||+|+|+..+..  ...+++....+.++++|||+++++
T Consensus        24 ~~~~V~I~dG~I~~Ig~~~~~~---~~~~vIDa~G~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~G~Ttv~d~  100 (521)
T 2ftw_A           24 FKSDVLVENGIIKEISKNIEPK---EGIKVVDATDKLLLPGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDF  100 (521)
T ss_dssp             EECEEEEETTEEEEEESCCCCC---SSCCEEECTTCEEEECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEE
T ss_pred             eeeeEEEECCEEEEecCCCCCC---CCCeEEECCCCEEecCEEeeecccCcCCCCccCHHHHHHHHHHHHhCCcceecCc
Confidence            3579999999999999764322   25689999999999999999999976532  244678888999999999999997


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHH-HcCCcEEEEecccCCCCCCCCCCHHHHHH
Q 013050           80 PLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKE  158 (450)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~  158 (450)
                      + ...+.....+.+............+.++++......+....+++.++. +.|+..++.++.+.+   ...++.+++++
T Consensus       101 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~~l~~l~~~~G~~~~k~~~~~~~---~~~~~~e~l~~  176 (521)
T 2ftw_A          101 V-IPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKN---SFMVTDQEMYH  176 (521)
T ss_dssp             E-CCCTTCCHHHHHHHHHHHHHTTCSSEEEEEEECCSCCHHHHHHHHHHHHHSCCCEEEEESSCTT---TTBCCHHHHHH
T ss_pred             C-CCCCCcCHHHHHHHHHHHhhcCceeeEeeEEeecCCChhHHHHHHHHHHhCCCCEEEEEeccCC---CcCCCHHHHHH
Confidence            5 222223334455554444444455667666554444444456677777 479999998876532   13578999999


Q ss_pred             HHHHHHhcCCcEEEecCChhhhhhh---hhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEE
Q 013050          159 GLSVLARYKRPLLVHAEMEKGSERH---VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHI  235 (450)
Q Consensus       159 ~~~~a~~~g~~v~~H~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  235 (450)
                      +++.|+++|+++.+|+++...+...   +...|...    ...+....|...+...+.+.+.++...       +.++|+
T Consensus       177 ~~~~A~~~g~~v~vH~e~~~~~~~~~~~l~~~G~~~----~~~h~~~~~~~~e~~a~~~~~~la~~~-------~~p~hi  245 (521)
T 2ftw_A          177 IFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITG----PEGHELSRPEALEAEATNRAIVIADSV-------CTPVYI  245 (521)
T ss_dssp             HHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCS----THHHHHHSCTHHHHHHHHHHHHHHHHH-------TCCEEE
T ss_pred             HHHHHHHcCCEEEEEcCCHHHHHHHHHHHHHcCCCC----hhhccccCcHHHHHHHHHHHHHHHHHh-------CCCEEE
Confidence            9999999999999999876533221   22222111    111223356666666777778888766       889999


Q ss_pred             EecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC----CCCceEEcCCCCC-hhhHHHHHHHHhcCCeeEEcC
Q 013050          236 VHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD----GDTRFKCAPPIRD-AANKEKLWEALMDGHIDMLSS  310 (450)
Q Consensus       236 ~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~l~~~~~~g~~~~~gt  310 (450)
                      .|+++. ...+.++++++.|+.++++.+++++.++...+..    .+..+.++||++. ...++.+|+++..|...+++|
T Consensus       246 ~h~ss~-~~~~~i~~~r~~G~~v~~e~~~~~L~~d~~~~~~~~~~~~~~~~~~Pplr~~~~~~~~l~~~l~~g~~~~~gs  324 (521)
T 2ftw_A          246 VHVQSI-GAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGT  324 (521)
T ss_dssp             CSCCCH-HHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSSHHHHHTTCCSSCCCCCTTHHHHHHHHHHHTSSCCCBC
T ss_pred             EecCcH-HHHHHHHHHHHcCCeEEEEEcchhhccCHHHhcCCCcccCcceEEcCCCCCChhhHHHHHHHhcCCCEEEEEe
Confidence            999987 8899999999999999999999998887765432    1223567899987 678889999999999999999


Q ss_pred             CCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh-cCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEE
Q 013050          311 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVV  388 (450)
Q Consensus       311 D~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv  388 (450)
                      |+.|+....+....+.|...+.|+.+.+..++.++....+ .++|++++++++|.|||+++|+ +++|+|++|+.|||||
T Consensus       325 D~~~~~~~~k~~~~~~~~~~p~G~~G~e~~l~~~~~~~v~~~~l~~~~~~~~~t~~~A~~~gl~~~~G~i~~G~~ADlvv  404 (521)
T 2ftw_A          325 DNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVI  404 (521)
T ss_dssp             CBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEE
T ss_pred             CCCCCCHHHhhcccCChhhCCCCCccHHHHHHHHHHHHHhcCCCCHHHHHHHhChhHHHHhCCCCCCCCcCCCCcCCEEE
Confidence            9999887666655567888899999999999888876554 5799999999999999999999 6799999999999999


Q ss_pred             EeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc-CCCCCccccc
Q 013050          389 WEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA-PAACGSPILA  449 (450)
Q Consensus       389 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~-~~~~g~~~~~  449 (450)
                      ||.+..+++... .+.+... ++||++....+.|..||++|++||++|+++ .+..||+|++
T Consensus       405 ~d~~~~~~i~~~-~~~~~~~-~~p~~g~~~~g~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~  464 (521)
T 2ftw_A          405 WDPNQSKTISKD-THHHAVD-FNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGRFVPR  464 (521)
T ss_dssp             EEEEEEEECCTT-TCCCSSS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCC
T ss_pred             EeCCCCEEEChH-HccccCC-CCCcCCCEeeeeEEEEEECCEEEEECCeecccCcCceEecC
Confidence            999988888777 7777777 999999999999999999999999999999 4577999986

>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A

Probab=100.00  E-value=6.9e-48  Score=383.78  Aligned_cols=430  Identities=23%  Similarity=0.276  Sum_probs=325.4

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCC--CcccchHHHHHHHHhCCceEEEeCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--TEWEGFPSGTKAAAAGGITTLIDMP   80 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~--~~~~~~~~~~~~~~~~GvT~~~~~~   80 (450)
                      +++|+|+||||++|++..+.+   .+.++||++|++|+|||||+|+|+..+.+  ...+++....+.++++|||++++++
T Consensus        43 ~~~V~I~~grI~~Ig~~~~~~---~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~~~l~~GvTtv~d~~  119 (501)
T 2vm8_A           43 YADIYMEDGLIKQIGENLIVP---GGVKTIEAHSRMVIPGGIDVHTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHV  119 (501)
T ss_dssp             EEEEEEETTEEEEEESSCCCC---SSSCEEECTTCEEEECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEE
T ss_pred             EeeEEEECCEEEEeccCCCCC---CCCeEEECCCCEEeeCEEEeeecccccccCCCcHHHHHHHHHHHHhCCcEEEEeCC
Confidence            579999999999999764321   35689999999999999999999976532  2356788888999999999999986


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHH-HcCCcEEEEecccCCCCCCCCCCHHHHHHH
Q 013050           81 LNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEG  159 (450)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~  159 (450)
                       ...+.......+....+.........++.+......+....+++.++. +.|+.+++.++.+..   ....+.+.++++
T Consensus       120 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~l~~~~G~~~i~~~~~~~~---~~~~~~~~l~~~  195 (501)
T 2vm8_A          120 -VPEPGTSLLAAFDQWREWADSKSCCDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKD---RFQLTDCQIYEV  195 (501)
T ss_dssp             -CCCTTSCHHHHHHHHHHHHHHHCSSEEEEEEECCSCSHHHHHHHHHHHHHSCCCEEEEESSSTT---TTBCCHHHHHHH
T ss_pred             -CCCCCCChHHHHHHHHHHHhcCCeeEEEEEEEecCCCcccHHHHHHHHHhCCceEEEEeeccCC---CCCCCHHHHHHH
Confidence             444434434445444443333234455555433333333455666666 479999998875532   135788999999


Q ss_pred             HHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecC
Q 013050          160 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS  239 (450)
Q Consensus       160 ~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~  239 (450)
                      ++.|+++++++.+|+++...+...+..-. ..+......+....|...+...+.+...+++..       +.++|+.|++
T Consensus       196 ~~~A~~~g~~v~~H~e~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~-------g~~~hi~h~~  267 (501)
T 2vm8_A          196 LSVIRDIGAIAQVHAENGDIIAEEQQRIL-DLGITGPEGHVLSRPEEVEAEAVNRAITIANQT-------NCPLYITKVM  267 (501)
T ss_dssp             HHHHHHHTCEEEEECCCHHHHHHHHHHHH-TTTCCSTHHHHHHSCHHHHHHHHHHHHHHHHHH-------TCCEEEEEEC
T ss_pred             HHHHHHhCCEEEEEccChHHHHHHHHHHH-hcCCCChhhccccCCHHHHHHHHHHHHHHHHHh-------CCcEEEEeCC
Confidence            99999999999999987643222211000 111111122333456667777888888888876       8899999999


Q ss_pred             ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC----CCceEEcCCCCCh-hhHHHHHHHHhcCCeeEEcCCCCC
Q 013050          240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG----DTRFKCAPPIRDA-ANKEKLWEALMDGHIDMLSSDHSP  314 (450)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~l~~~~~~g~~~~~gtD~~~  314 (450)
                      +. ..++.++++++.|+.++++.+++++.++...+...    +..+++.||++.. .....+++++..|+.+++|||+.|
T Consensus       268 ~~-~~~~~i~~~~~~G~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~pp~r~~~~~~~~l~~~l~~G~~~~~gtD~~~  346 (501)
T 2vm8_A          268 SK-SSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCT  346 (501)
T ss_dssp             CH-HHHHHHHHHHHTTCCEEEEEBHHHHHCCGGGGGCSSHHHHHHTCCSSCCCSCTTHHHHHHHHHHHTSSCCCBCCBCC
T ss_pred             cH-HHHHHHHHHHhCCCcEEEEEChhHhhcChhhhcccccccCceEEECCCCCCCcchHHHHHHHHhcCceEEEEecCCC
Confidence            87 78999999999998888888888887766544321    1124466888764 467888999999999999999988


Q ss_pred             CChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh-cCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCC
Q 013050          315 TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPE  392 (450)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~  392 (450)
                      ++...++...+.|...+.|+.+.+..+..++....+ .++|++++++++|.|||+++|+ +++|+|++|+.|||||+|.+
T Consensus       347 ~~~~~~~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~l~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~  426 (501)
T 2vm8_A          347 FNTAQKAVGKDNFTLIPEGTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPD  426 (501)
T ss_dssp             CCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHHTCTTTSSCCCTTSBCCEEEEEEE
T ss_pred             CChhhhhcccCChhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHHhCCCCCCCccCCCCcCCEEEEcCC
Confidence            887766665566777788888888888877766554 4799999999999999999999 67999999999999999999


Q ss_pred             CceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc-CCCCCcccccC
Q 013050          393 AEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA-PAACGSPILAT  450 (450)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~-~~~~g~~~~~~  450 (450)
                      +.+++... ++.++.. ++||.+....++|..||++|++||++|+++ ++..||+|++.
T Consensus       427 ~~~~~~~~-~~~s~~~-~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~l~~~  483 (501)
T 2vm8_A          427 SVKTISAK-THNSSLE-YNIFEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYIPRK  483 (501)
T ss_dssp             EEEECCTT-TSSSSCS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCCC
T ss_pred             CCeeeccc-ccccccc-CCCccCcEeCceEEEEEECCEEEEECCeEccCCCCCceecCC
Confidence            88888776 6777777 899999998899999999999999999999 55779999863

>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.1e-47  Score=384.34  Aligned_cols=429  Identities=23%  Similarity=0.284  Sum_probs=328.0

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCC-CCCCcEEecCCCEEeccceeeccccCCCCC--CcccchHHHHHHHHhCCceEEEeC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRN-SKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--TEWEGFPSGTKAAAAGGITTLIDM   79 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~-~~~~~viD~~g~~v~PG~iD~H~H~~~~~~--~~~~~~~~~~~~~~~~GvT~~~~~   79 (450)
                      +++|+|+||+|++|++..+.+.. +...++||++|++|+|||||+|+|+..+..  ...+++....+.++++|||+++++
T Consensus        44 ~~dV~I~dGrI~~Ig~~~~~~~~~~~~~~vIDa~G~~V~PG~ID~H~Hl~~~~~~~~~~e~~~~~~~~al~~GvTtv~d~  123 (541)
T 2vr2_A           44 VADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDF  123 (541)
T ss_dssp             ECEEEEETTEEEEEEC-----------CEEEECTTSEEEECEEEEEECTTCBCSSSBCSCCTTHHHHHHHTTTEEEEEEE
T ss_pred             EeeEEEECCEEEEeccCCCCCcccccCceEEECCCCEEccCEEEecccCCCCCCCCcCHHHHHHHHHHHHhCCeeeeccc
Confidence            57899999999999976432210 012379999999999999999999976532  245678888899999999999998


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHH
Q 013050           80 PLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKE  158 (450)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~  158 (450)
                      + ...+.....+.+............+.++++......+....+++.++++ .|+..++.++.+.+   ...++.+++.+
T Consensus       124 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~el~~l~~~~G~~~~k~~~~~~~---~~~~~~~~l~~  199 (541)
T 2vr2_A          124 A-IPQKGGSLIEAFETWRSWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYKD---LYMVTDLELYE  199 (541)
T ss_dssp             E-CCCTTCCHHHHHHHHHHHHTTTCSSEEEEEEEECSCSHHHHHHHHHHHHTSCCCEEEEESSSTT---TTBCCHHHHHH
T ss_pred             c-CCCCCCCHHHHHHHHHHHhccCceEEEeeeecccCCCHHHHHHHHHHHHhCCCCEEEEEeccCC---ccCCCHHHHHH
Confidence            5 3332333444555554444444556666665444444445566777764 69999999876532   23578899999


Q ss_pred             HHHHHHhcCCcEEEecCChhhhhh---hhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEE
Q 013050          159 GLSVLARYKRPLLVHAEMEKGSER---HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHI  235 (450)
Q Consensus       159 ~~~~a~~~g~~v~~H~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  235 (450)
                      +++.|+++++++.+|+++...+..   .+...|...    ...+....|...+...+.+.+.+++..       +.++|+
T Consensus       200 ~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~----~~~h~~~~~~~~e~~a~~~~~~la~~~-------~~p~~~  268 (541)
T 2vr2_A          200 AFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGITG----PEGHELCRPEAVEAEATLRAITIASAV-------NCPLYI  268 (541)
T ss_dssp             HHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCS----THHHHHTSCHHHHHHHHHHHHHHHHHH-------TCCEEE
T ss_pred             HHHHHHHcCCEEEEEcCCHHHHHHHHHHHHHcCCCC----hhhccccchhHHHHHHHHHHHHHHHHh-------CCCEEE
Confidence            999999999999999987643222   121222111    111223456666777777888888877       889999


Q ss_pred             EecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC----CCceEEcCCCCC-hhhHHHHHHHHhcCCeeEEcC
Q 013050          236 VHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG----DTRFKCAPPIRD-AANKEKLWEALMDGHIDMLSS  310 (450)
Q Consensus       236 ~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~l~~~~~~g~~~~~gt  310 (450)
                      .|+++. ...+.++++++.|..++++.+++++.++...+...    +..+.++||++. ...++.+|+++..|...+++|
T Consensus       269 ~h~ss~-~~~~~i~~ar~~G~~v~~e~~~~~L~~d~~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~g~~~~~gt  347 (541)
T 2vr2_A          269 VHVMSK-SAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGT  347 (541)
T ss_dssp             EEECCH-HHHHHHHHHHHTTCCEEEEEBHHHHHCCSGGGGCSSHHHHHTTCCSSCCCSCTTHHHHHHHHHHTTSSCCCBC
T ss_pred             EeCCCH-HHHHHHHHHHHcCCeEEEEeehhhhcCCHHHhcCccccccCceEECCCCCCCcchHHHHHHHHhcCCeEEEEe
Confidence            999987 88899999999999999999998887776543221    223567889986 567888999999999999999


Q ss_pred             CCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEE
Q 013050          311 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVV  388 (450)
Q Consensus       311 D~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv  388 (450)
                      |+.|+....+....++|...+.|+.+.+..++.++.... ..++|++++++++|.|||++||+ +++|+|++|++|||||
T Consensus       348 D~~~~~~~~k~~~~~~~~~~p~G~~G~e~~l~~~~~~~v~~~~l~~~~~~~~~T~~pA~~lgl~~~~G~i~~G~~ADlvv  427 (541)
T 2vr2_A          348 DNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVI  427 (541)
T ss_dssp             CBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEE
T ss_pred             CCCCCChHHhcccCCChhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCCccCCCCCCCEEE
Confidence            999988877776667899999999999998888777654 45699999999999999999999 6899999999999999


Q ss_pred             EeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccC-CCCCccccc
Q 013050          389 WEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP-AACGSPILA  449 (450)
Q Consensus       389 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~-~~~g~~~~~  449 (450)
                      ||.+..+++..+ .+.+... ++||.+....++|..||++|++||++|+++. +..||+|++
T Consensus       428 ~d~~~~~~~~~~-~~~~~~~-~~p~~g~~~~g~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~  487 (541)
T 2vr2_A          428 WDPKGTRTISAK-THHQAVN-FNIFEGMVCHGVPLVTISRGKVVYEAGVFSVTAGDGKFIPR  487 (541)
T ss_dssp             EEEEEEEECCTT-TCSSSCS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCSCBCCC
T ss_pred             EcCCcCeEeCHH-HhhcccC-CCccCCCEEeeeEEEEEECCEEEEECCeeccCCCCceEecC
Confidence            999887777766 6666666 8999999999999999999999999999994 578999986

>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis}

Probab=100.00  E-value=8.4e-48  Score=377.72  Aligned_cols=422  Identities=26%  Similarity=0.341  Sum_probs=328.1

Q ss_pred             cceeEEEeCCEEEEecc-CCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCC
Q 013050            2 CKRAVEIKEGNIISIVS-EEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMP   80 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~-~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~   80 (450)
                      .+++|+|+||+|++|++ .........+.++||++|++|+|||||+|+|+..++....+++....+.++++|||++++++
T Consensus        20 ~~~~v~i~~g~I~~i~~~~~~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~e~~~~~~~~~~~~GvTt~~~~~   99 (452)
T 2gwn_A           20 FPGSVMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCIDDQVHFREPGLTHKATIASESRAAVAGGVTSFMDMP   99 (452)
T ss_dssp             EEEEEEEETTEEEEEEESCCCTTCCTTCSEEEECTTCEEEECEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECS
T ss_pred             eeeeEEEECCEEEEEecCCCccccCCCCCeEEeCCCCEEecCEEeeccccCCCCCCcHHHHHHHHHHHHhCCeEEEEcCC
Confidence            35789999999999987 43211001346899999999999999999999877665667888889999999999999997


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHH
Q 013050           81 LNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL  160 (450)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (450)
                       ++.+.....+.+....+.......+++.++......+   .+.+.++.+.|+.+++.++.+... ..+..+.+.+++.+
T Consensus       100 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~g~~g~k~~~~~~~~-~~~~~~~~~~~~~~  174 (452)
T 2gwn_A          100 -NTNPPTTMWERLLEKRQIGADTAWANYGFFFGGTNDN---IDEIKRVDKHLVPGLKLFLGSSTG-NMLVDNKETLEKIF  174 (452)
T ss_dssp             -CSSSCSCSHHHHHHHHHHHHHHCSSEEEECEECCSSC---HHHHHTCCTTSCSCEEEESSSCCG-GGBCCCHHHHHHHH
T ss_pred             -CCCCCCChHHHHHHHHHHhhccCcccEEEEEeecCCC---HHHHHHHHHcCCCEEEEEeccCCC-CcccCCHHHHHHHH
Confidence             6666667777777776766666677887776554432   345555666788999998765421 12334566666555


Q ss_pred             HHHHhcCCcEEEecCChhhhhhhh----hhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEE
Q 013050          161 SVLARYKRPLLVHAEMEKGSERHV----KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIV  236 (450)
Q Consensus       161 ~~a~~~g~~v~~H~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  236 (450)
                      +   +.+.++..|+++...+...+    ...+..   .....+....|..++.+.+.++++++++.       +.++|+.
T Consensus       175 ~---~~~~~~~~h~~~~~~~~~~~~~~~~~~G~~---~~~~~h~~~~~~~~~~~~l~~~~~la~~~-------g~~v~i~  241 (452)
T 2gwn_A          175 G---ECDLLIATHCEKEEIIRANKEHYKAKYGND---LDIHFHPLIRSEEACYRSSAEAVELAERM-------NARLHIL  241 (452)
T ss_dssp             H---HCCSCEEEECCCHHHHHHHHHHHHHHHCSC---CCGGGHHHHSCHHHHHHHHHHHHHHHHHH-------TCCEEEC
T ss_pred             H---HcCCEEEEcCCCHHHHHhHHhhhhhhcCcc---cchhhccccCChHHHHHHHHHHHHHHHHh-------CCCEEEE
Confidence            4   45888999998766544432    111100   01111223457778888999999999987       9999988


Q ss_pred             ecCChhHHHHHHHH---HHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCC
Q 013050          237 HLSDASSSLDLLME---AKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS  313 (450)
Q Consensus       237 h~~~~~~~~~~~~~---~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~  313 (450)
                      |+++. +.++.+++   .++.  ++++++++|+++++.+.+...+..+..+|+++.......++++++.|+.+++|||+.
T Consensus       242 H~~~~-~~~~~~~~~~a~~~~--~v~~~~~~h~~~l~~~~~~~~g~~~~~~P~lr~~~~~~~l~~~l~~Gv~~~lgTD~~  318 (452)
T 2gwn_A          242 HLSTE-KELSLFRNDIPTAQK--RITSEVCVHHLWFSDTDYGRLGNRIKWNPAIKKESDREALRAAVRNGRIDIIATDHA  318 (452)
T ss_dssp             CCCCT-GGGGGSCCSSCGGGC--SEEEEEEHHHHHCCGGGHHHHGGGGCCSSCCCCHHHHHHHHHHHHHSSSCEEECCBC
T ss_pred             eCCCH-HHHHHHHHhhcccCC--CeEEEEchHHhhcCHHHHhccCceEEECCCCCCHHHHHHHHHHHHCCCceEEEeCCC
Confidence            99876 66666665   2333  578888999999887766545667778888888888899999999999999999998


Q ss_pred             CCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCC
Q 013050          314 PTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEA  393 (450)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~  393 (450)
                      |++...+   ..+|+..+.|+.+.+..++.++......++|++++++++|.|||+++|++++|+|++||.|||||+|.++
T Consensus       319 ~~~~~~k---~~~~~~~~~g~~~~e~~~~~~~~~~~~~~ls~~~~l~~~T~~~A~~lgl~~~G~l~~G~~ADlvv~d~~~  395 (452)
T 2gwn_A          319 PHLLREK---EGSCLQAASGGPLVQHSLLALLELCNQGIFSIEEIVSKTAHIPATLFAIEKRGYIRPGYYADLVLVDPSS  395 (452)
T ss_dssp             CCCHHHH---CSCTTTSCCCCCCTTTHHHHHHHHHHTTSSCHHHHHHHHTHHHHHHHTBTTCSSCCTTSBCCEEEEETTS
T ss_pred             CCChHHh---cCChhhCCCCCccHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHHcCCCCCCcccCCCcCCEEEEcCCC
Confidence            8876543   2468888889999998888777655567899999999999999999999668999999999999999998


Q ss_pred             ceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050          394 EFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA  449 (450)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~  449 (450)
                      +++++.. ++.+... ++|+.|..+.++|..||++|++||++|+++.+ ..|++|+.
T Consensus       396 ~~~~~~~-~~~~~~~-~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~  450 (452)
T 2gwn_A          396 PHTVSAD-NILSLCG-WSPFEGFTFSHSVAYTFVNGCLAYAKGRLAESRPTVHPLFF  450 (452)
T ss_dssp             CEECCTT-TCCSTTC-CCTTTTCEESCEEEEEEETTEEEEETTEECSSCCCCCBCCB
T ss_pred             CeEECHH-HccccCC-CCCCCCcEEeeeEEEEEECCEEEEECCeeccCCCCceeeCC
Confidence            8888777 7777777 89999999999999999999999999999977 78999864

>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus}

Probab=100.00  E-value=5.5e-47  Score=370.16  Aligned_cols=407  Identities=30%  Similarity=0.410  Sum_probs=309.5

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      .+++|+|+||+|++|++.       ++.++||++|++|+|||||+|+|+..++..+.+++....+.++++|||++++++ 
T Consensus        17 ~~~~v~i~~g~I~~i~~~-------~~~~~id~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~-   88 (426)
T 2z00_A           17 GPADVLIGEGRILSLEGG-------EAKQVVDGTGCFLAPGFLDLHAHLREPGEEVKEDLFSGLLAAVRGGYTDLVSMP-   88 (426)
T ss_dssp             EEEEEEEETTEEEESBCC-------CCSEEEECTTCEEEECEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECS-
T ss_pred             ecceEEEECCEEEEEecC-------CCceEEeCCCCEEecCEEEeccccCCCCCCchHHHHHHHHHHHhCCccEEEecC-
Confidence            367899999999999864       145799999999999999999999887665567788889999999999999997 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccC-CCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL  160 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (450)
                      ...+.......+....+.......+++..++.+.. ...+..+.+.++.+.|+.+++.       +..+..+.+.+.+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~i~~-------~~~~~~~~~~l~~~~  161 (426)
T 2z00_A           89 NTKPPVDTPEAVRALKEKAKALGLARLHPAAALTEKQEGKTLTPAGLLREAGAVLLTD-------DGRTNEDAGVLAAGL  161 (426)
T ss_dssp             CSSSCSCSHHHHHHHHHHHHHHTSSEECCEECSBGGGCSSSBCCHHHHHHHTCCEEEC-------TTSCCCCHHHHHHHH
T ss_pred             CCCCCcChHHHHHHHHHHhcccCcccEEEEEEeecCCChhhHHHHHHHHHcCCEEEEC-------CCcCCCCHHHHHHHH
Confidence            55554555566655555544433244433333322 1122344566666678877763       222457899999999


Q ss_pred             HHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhh-ccCCCCCCceEEEEecC
Q 013050          161 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDT-RTDGPAEGAHLHIVHLS  239 (450)
Q Consensus       161 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~h~~  239 (450)
                      +.|+++|+++.+|+.+.........    +.+......+....|...+...+.++++++.+. +..+  .+.++++.|++
T Consensus       162 ~~a~~~g~~v~~H~~~~~~~~~~~~----~~g~~~~~~g~~~~~~~~e~~~~~~~~~~a~~~~~~~~--~g~~~~i~H~~  235 (426)
T 2z00_A          162 LMAAPLGLPVAVHAEDAGLRRNGVM----NDGPLADLLGLPGNPPEAEAARIARDLEVLRYALRRSP--ATPRLHVQHLS  235 (426)
T ss_dssp             HHHGGGTCCEEECCCCHHHHTTCSE----ECSHHHHHHTCCEECHHHHHHHHHHHHHHHHHHHHHCS--SCCCEEETTCC
T ss_pred             HHHHhhCCEEEEeCCCHHHHhhhhh----ccCccchhcccccCChHHHHHHHHHHHHHHhhcccccc--CCCcEEEEeCC
Confidence            9999999999999987654332111    111222223344567666777777788777750 0000  28889999999


Q ss_pred             ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhh
Q 013050          240 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPEL  319 (450)
Q Consensus       240 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~  319 (450)
                      .. +..+.++++++.|+.+++++||+++.++...+...+...+..||++....+..++++++.|+.++++||+.|.....
T Consensus       236 ~~-~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~plr~~~~~~~l~~~l~~G~~~~lgsD~~p~~~~~  314 (426)
T 2z00_A          236 TK-RGLELVREAKRAGLPVTAEATPHHLTLTEEALRTFDPLFKVAPPLRGEEDREALLEGLLDGTLDAIATDHAPHTLAE  314 (426)
T ss_dssp             CH-HHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGGGCCGGGCCSSCCCCHHHHHHHHHHHHHTSSCEECCCBCCCCTTG
T ss_pred             CH-HHHHHHHHHHHcCCCEEEEEchHHhEeCHhHhhccCceEEEeCCCCCHHHHHHHHHHHhCCCcEEEecCCCCCCHHH
Confidence            86 78999999999999999999999988876655545556678899998888999999999999999999998876654


Q ss_pred             hcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeC
Q 013050          320 KLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD  398 (450)
Q Consensus       320 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~  398 (450)
                      +   ..+|+..+.|..+.+..++..+.. ....++|++++++++|.|||+++|++ .|+|+|||.|||||+|. .+++++
T Consensus       315 ~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~T~n~A~~lgl~-~G~l~~G~~ADlvv~d~-~~~~~~  389 (426)
T 2z00_A          315 K---EKDLLRAPFGIPSLEVAFPLLYTELHLKRGFPLQRLVELFTDGPRRVLGLP-PLHLEEGAEASLVLLSP-KERPVD  389 (426)
T ss_dssp             G---GSCTTTSCCCBCCTTTHHHHHHHHTHHHHCCCHHHHHHHHTHHHHHHHTCC-CCCSSTTSBCCEEEEEC-CCEECC
T ss_pred             c---cCChhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHHHhCCC-cccccCCCCCCEEEEeC-CcEEEc
Confidence            3   245777788888888888776654 34557999999999999999999997 99999999999999998 557776


Q ss_pred             CCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCc
Q 013050          399 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN  437 (450)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~  437 (450)
                      .+ ++.+... ++||.+..+.++|..|||+|++||++++
T Consensus       390 ~~-~~~~~~~-~~p~~g~~~~~~v~~t~v~G~~v~~~~~  426 (426)
T 2z00_A          390 PS-AFASKAR-YSPWAGWVLGGWPVLTLVAGRIVHEALK  426 (426)
T ss_dssp             GG-GCSSSCC-CCTTTTCEECCEEEEEEETTEEEEECCC
T ss_pred             HH-HccccCC-CCCcCCCEEEEEEEEEEECCEEEEecCC
Confidence            65 6666666 8999999999999999999999999875

>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A*

Probab=100.00  E-value=1.1e-45  Score=364.51  Aligned_cols=401  Identities=28%  Similarity=0.429  Sum_probs=275.8

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      .+++|+|+||+|++|++....    .+.++||++|++|+|||||+|+|+..++..+.+++....+.++++|||++++++ 
T Consensus        65 ~~~~v~i~~g~I~~i~~~~~~----~~~~~iD~~g~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~-  139 (467)
T 1xrt_A           65 GEFDILVENGKIKKIDKNILV----PEAEIIDAKGLIVCPGFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-  139 (467)
T ss_dssp             EECEEEEETTEEEEEESSCCC----SSEEEEECTTSEEEECEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECS-
T ss_pred             ecceEEEECCEEEEecCCCCC----CCCcEEeCCCCEEccCEEEEeecccCCCCCchhhHHHHHHHHHhCCeEEEEecC-
Confidence            357899999999999975331    245799999999999999999999876655567788889999999999999997 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC-CccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHH
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL  160 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (450)
                      ...+.....+.+....+.......+++...+.+... .....+.+.++.+.|+..+..       .+.+..+.+.+++++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~g~~~i~~-------~~~~~~~~e~l~~~~  212 (467)
T 1xrt_A          140 NTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRKGKEIADFYSLKEAGCVAFTD-------DGSPVMDSSVMRKAL  212 (467)
T ss_dssp             CSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBGGGCSSSBCCHHHHHHHTCCCBCC-------TTSCCCCHHHHHHHH
T ss_pred             CCCCCCChHHHHHHHHHHhcccCcceEEEEeeecCCCCcccHHHHHHHHHcCCEEEEc-------CCCCCCCHHHHHHHH
Confidence            544545555666655555544333555555433321 112234455666667655432       222357889999999


Q ss_pred             HHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC
Q 013050          161 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD  240 (450)
Q Consensus       161 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~  240 (450)
                      +.|+++|+++.+|+.+...+...+.     .+......+....+...+...+.+.+.++...       +.++|+.|++.
T Consensus       213 ~~A~~~g~~v~~H~~~~~~~~~~l~-----~g~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~-------g~~~hi~H~~~  280 (467)
T 1xrt_A          213 ELASQLGVPIMDHCEDDKLAYGVIN-----EGEVSALLGLSSRAPEAEEIQIARDGILAQRT-------GGHVHIQHVST  280 (467)
T ss_dssp             HHHHHHTCEEEECCCGGGGTC-------------------------CHHHHHHHHHHHHHHH-------CCEEEESCCCS
T ss_pred             HHHHhcCCEEEEECCCHHHHHHHHh-----cCccchhcccccCChHHHHHHHHHHHHHHHHh-------CCCEEEEeCCC
Confidence            9999999999999976554321110     01111111223344444555666666777655       88999999998


Q ss_pred             hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh
Q 013050          241 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK  320 (450)
Q Consensus       241 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~  320 (450)
                      . +.++.++++++.|+.+++.+||+++.++...+...+...+..|+++....+..++++++.|+.+++|||+.|.+...+
T Consensus       281 ~-~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~~~~~~pplr~~~~~~~l~~~l~~Gv~~~lgTD~~~~~~~~~  359 (467)
T 1xrt_A          281 K-LSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEK  359 (467)
T ss_dssp             H-HHHHHHHHHHHTTCCEEEEECGGGGC----------------------CCHHHHHHHHHHTCSCEECCCBCCCCC---
T ss_pred             H-HHHHHHHHHHhcCCcEEEeccHHHHhcCHhHhhccCceEEEcCCCCCHHHHHHHHHHHhCCceEEEeeCCCCCChhHh
Confidence            6 789999999999988999999998887766554445556777888877788889999999999999999887654432


Q ss_pred             cccCCCccccCCCCcchhhHHHHHHHHHHhcC-CCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCC
Q 013050          321 LLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN  399 (450)
Q Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g-ls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~  399 (450)
                      .    .|...+.|+.+.+..++.+++ ..+.| +|++++++++|.|||++||++ .|+|+|||.|||||+|.+++++++.
T Consensus       360 ~----~~~~~~~g~~g~e~~l~~~l~-~~~~g~ls~~~al~~aT~n~A~~lgl~-~G~I~~G~~ADlvvld~~~~~~i~~  433 (467)
T 1xrt_A          360 E----LVEFAMPGIIGLQTALPSALE-LYRKGIISLKKLIEMFTINPARIIGVD-LGTLKLGSPADITIFDPNKEWILNE  433 (467)
T ss_dssp             ------------CCCCGGGHHHHHHH-HHHTTSSCHHHHHHHHTHHHHHHHTCS-CSCCCTTSBCCEEEEEEEEEEECST
T ss_pred             c----ccccCCCCCccHHHHHHHHHH-HHHcCCCCHHHHHHHhccCHHHHhCCC-cccccCCCCCCEEEEeCCCCEEECh
Confidence            1    255567788888877777666 55666 999999999999999999997 9999999999999999998788776


Q ss_pred             CCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050          400 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE  435 (450)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~  435 (450)
                      + ++.+... ++||.+....++|..|||+|++||+|
T Consensus       434 ~-~~~~~~~-~~p~~g~~~~~~V~~viv~G~~v~~~  467 (467)
T 1xrt_A          434 E-TNLSKSR-NTPLWGKVLKGKVIYTIKDGKMVYKD  467 (467)
T ss_dssp             T-TCCSSCC-CCTTTTCEEEEEEEEEEETTEEEEEC
T ss_pred             H-HccCcCC-CCCccCCEEeEEEEEEEECCEEEecC
Confidence            6 6666666 89999998889999999999999986

>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A*

Probab=100.00  E-value=4.5e-39  Score=317.43  Aligned_cols=376  Identities=19%  Similarity=0.210  Sum_probs=260.6

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      ..++|+|+||||++|++....    .+.++||++|++|+|||||+|+|+....+..     ......+.+|+|++++..+
T Consensus        25 ~~~~v~i~~g~I~~i~~~~~~----~~~~~id~~g~~v~PG~iD~H~H~~~~~~~~-----~~~~~~~~~G~Tt~~~g~c   95 (480)
T 3gip_A           25 RRADLGVRDGRIAAIGELGAH----PARHAWDASGKIVAPGFIDVHGHDDLMFVEK-----PDLRWKTSQGITTVVVGNC   95 (480)
T ss_dssp             EECEEEEETTEEEEEECCTTS----CEEEEEECTTSEEEECEEESSCCCTTHHHHS-----TTCHHHHTTTEEEEEECCT
T ss_pred             eeeEEEEECCEEEEecCCCCC----CCCeEEECCCCEEccCEEeccccccccccCC-----hhHHHHhcCCeeEEEecCC
Confidence            468999999999999986432    3568999999999999999999986432111     1123558999999998411


Q ss_pred             --------CCCCCCCc---------HHHHHHHHHHHh-cCCceEEEEecccc------------CCCccchHHHHHHH--
Q 013050           82 --------NSDPSTIS---------TETLKLKVDAAE-KRIYVDVGFWGGLV------------PENAYNASALEALL--  129 (450)
Q Consensus        82 --------~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~--  129 (450)
                              +..+....         +..+..+.+... ....+++.++.+..            ..+.+.++.+.+++  
T Consensus        96 G~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~g~~~~~~~~~~l~~m~~l~~~  175 (480)
T 3gip_A           96 GVSAAPAPLPGNTAAALALLGETPLFADVPAYFAALDAQRPMINVAALVGHANLRLAAMRDPQAAPTAAEQQAMQDMLQA  175 (480)
T ss_dssp             TCCSCSCCCTTCCCGGGGGTCSSCCCSSHHHHHHHHHHSCCSSEEEEEEEHHHHHHHHCSSTTSCCCHHHHHHHHHHHHH
T ss_pred             CcCCCCCCcccchhhhhhhhccCccccCHHHHHHHHHhCCCCceEEEccccHHHHHHhcCCcCCCCCHHHHHHHHHHHHH
Confidence                    11111111         123455555544 45577888765432            12334455555555  


Q ss_pred             --HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHH
Q 013050          130 --NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW  207 (450)
Q Consensus       130 --~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  207 (450)
                        +.|+.+++.+..|...   ...+.+++.++++.++++|.++.+|+++...                           .
T Consensus       176 ~~~~Ga~g~~~~~~y~p~---~~~~~~el~~~~~~a~~~g~~v~~H~~~~~~---------------------------~  225 (480)
T 3gip_A          176 ALEAGAVGFSTGLAYQPG---AVAQAAELEGLARVAAERRRLHTSHIRNEAD---------------------------G  225 (480)
T ss_dssp             HHHHTCCEEEEETTSTTG---GGCCHHHHHHHHHHHHHTTCEEEEECSCSST---------------------------T
T ss_pred             HHHCCCcEEeecCccCCc---ccCCHHHHHHHHHHHHHcCCEEEEEecCccc---------------------------c
Confidence              6899999998766421   2357889999999999999999999965431                           2


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCceEEEEecCC--------hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCC
Q 013050          208 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD--------ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT  279 (450)
Q Consensus       208 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~--------~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~  279 (450)
                      +.+.+.+++.++++.       +.++|+.|++.        .++.++.++++++.|+.++++++|++...+...+...+.
T Consensus       226 ~~~a~~e~i~la~~~-------g~~v~i~H~s~~~~~~~~~~~~~l~~i~~a~~~G~~Vt~e~~p~~~~~t~~~l~~~~~  298 (480)
T 3gip_A          226 VEAAVEEVLAIGRGT-------GCATVVSHHKCMMPQNWGRSRATLANIDRAREQGVEVALDIYPYPGSSTILIPERAET  298 (480)
T ss_dssp             HHHHHHHHHHHHHHH-------CCEEEETTCCCCSGGGTTTHHHHHHHHHHHHHTTCCEEEEECSCSCEEEECCGGGTTT
T ss_pred             HHHHHHHHHHHHHHh-------CCCEEEEEEeccCccchhhHHHHHHHHHHHHHcCCceEEEeeccccCcchhhhcCHHH
Confidence            356788899999877       99999999983        128999999999999999999999999887766555444


Q ss_pred             ceEEc-------CCCCC-----------hhhHHHHHHHH-----------------hcCCeeEEcCCCCCCChhhhcccC
Q 013050          280 RFKCA-------PPIRD-----------AANKEKLWEAL-----------------MDGHIDMLSSDHSPTVPELKLLDE  324 (450)
Q Consensus       280 ~~~~~-------~~~~~-----------~~~~~~l~~~~-----------------~~g~~~~~gtD~~~~~~~~~~~~~  324 (450)
                      ..++.       |++..           ....+.+++++                 ..+...++|||+.+....      
T Consensus       299 ~~~~~~~~~~~~p~~~g~~~~~ia~~~~~~~~~a~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~gsD~~~~~~~------  372 (480)
T 3gip_A          299 IDDIRITWSTPHPECSGEYLADIAARWGCDKTTAARRLAPAGAIYFAMDEDEVKRIFQHPCCMVGSDGLPNDAR------  372 (480)
T ss_dssp             SSCCEEEEESSCGGGTTCBHHHHHHHHTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTTEEECCCCCTTCSS------
T ss_pred             HHHHhhccccCCCccCCCcHHHHHHHcCCCHHHHHHHhccCCeEEEeCCHHHHHHHHcCCCeEEecCCcccCCC------
Confidence            44444       66532           12233333322                 234455677886544211      


Q ss_pred             CCccccCCCCcchhhHHHHHHHHH-H-hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCC
Q 013050          325 GNFLKAWGGISSLQFVLPVTWSYG-R-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHP  402 (450)
Q Consensus       325 ~~~~~~~~g~~~~~~~~~~~~~~~-~-~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~  402 (450)
                              ........++..+... + ..++|++++++++|.|||+++|+++.|+|++|+.|||+|+|.+...+..    
T Consensus       373 --------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~t~~~a~~~g~~~~G~l~~G~~AD~vv~d~~~~~~~~----  440 (480)
T 3gip_A          373 --------PHPRLWGSFTRVLGRYVREARLMTLEQAVARMTALPARVFGFAERGVLQPGAWADVVVFDPDTVADRA----  440 (480)
T ss_dssp             --------CCTHHHHHHHHHHHCCCCCTCSSCHHHHHHHHTHHHHHHHTCTTCSSCSTTSBCCEEEECTTTCBCCC----
T ss_pred             --------CChhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHcCCCCCCccCCCCCCCEEEEcCccccCcc----
Confidence                    1122233445555433 3 2459999999999999999999955799999999999999988744321    


Q ss_pred             cccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCcccccC
Q 013050          403 VHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILAT  450 (450)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~~~  450 (450)
                       .+..+       ......|..|||+|++||++|++++ ..||+|++.
T Consensus       441 -~~~~~-------~~~~~~v~~v~v~G~~v~~~g~~~~-~~G~~lr~~  479 (480)
T 3gip_A          441 -TWDEP-------TLASVGIAGVLVNGAEVFPQPPADG-RPGQVLRAG  479 (480)
T ss_dssp             -CSSST-------TCCCBSEEEEEETTEEEESSCCSSS-CCCCBCCC-
T ss_pred             -ccccc-------cccCCCccEEEECCEEEEECCeEcC-CCCcCcCCC
Confidence             11111       1123469999999999999999999 899999863

>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp}

Probab=100.00  E-value=1.1e-38  Score=298.25  Aligned_cols=327  Identities=20%  Similarity=0.207  Sum_probs=260.8

Q ss_pred             CCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc-eEEEEecc
Q 013050           35 GEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY-VDVGFWGG  113 (450)
Q Consensus        35 ~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  113 (450)
                      .|++|+||+||+|+|+.. +.     .......+++.|+|++++|| ++.|..+..+.+..+.+++..... +++.++++
T Consensus        22 ~~~~vlPG~ID~HvHlre-G~-----~~~e~~aA~aGG~Ttvi~mP-nt~P~~~~~~~~~~~~~~a~~~~~~vd~~~~~~   94 (359)
T 3pnu_A           22 SNAMKLKNPLDMHLHLRD-NQ-----MLELIAPLSARDFCAAVIMP-NLIPPLCNLEDLKAYKMRILKACKDENFTPLMT   94 (359)
T ss_dssp             SCCEEEESCEEEEECCCS-HH-----HHHHHHHHHHTTCSEEEECC-CCSSCCCSHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred             CCcEEccCcEEccccCCC-CC-----cchhHHHHHhCCCcEEEECC-CCCCCCCcHHHHHHHHHHHhccCCCceEEEeee
Confidence            489999999999999987 43     23334477889999999999 999999999999888887766555 88888887


Q ss_pred             --ccCCCccchHHHHHHHHcCCcEEEEecccCC---CCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhcc
Q 013050          114 --LVPENAYNASALEALLNAGVLGLKSFMCPSG---INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLED  188 (450)
Q Consensus       114 --~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~  188 (450)
                        +.   ....+++.++.+. +.++|.|+....   .++.+..+.+.++++++.+++.|.++.+|+++...+.       
T Consensus        95 l~lt---~~~~~el~~l~~~-v~~~Kl~~aga~~~s~~~~~~~~~~~l~~~l~~~~~~g~~v~vHaEd~~~i~-------  163 (359)
T 3pnu_A           95 LFFK---NYDEKFLYSAKDE-IFGIKLYPAGITTNSNGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVM-------  163 (359)
T ss_dssp             EECS---CCCHHHHHHHTTT-CSEEEECBTTSSSSCTTSBCCCCHHHHHHHHHHHHHTTCCEEECCCCSSCGG-------
T ss_pred             eEec---CCCHHHHHHHHHh-hhehhheeCCCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEecCCchHhH-------
Confidence              55   2235677777777 889999875321   1233445889999999999999999999998765311       


Q ss_pred             CcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhc
Q 013050          189 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLA  268 (450)
Q Consensus       189 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~  268 (450)
                                       ..|.+.+.+++.++++      .++.++|+.|+++. ++++.++++    .+|++++||+|++
T Consensus       164 -----------------~~E~~ai~r~~~la~~------~~g~~lhi~HvSt~-~~v~~I~~A----~~VtaEv~phhL~  215 (359)
T 3pnu_A          164 -----------------DRESNFAKIYEKLAKH------FPRLKIVMEHITTK-TLCELLKDY----ENLYATITLHHLI  215 (359)
T ss_dssp             -----------------GTTGGGHHHHHHHHHH------CTTSCEEECSCCSH-HHHHHHHHC----TTEEEEECSGGGT
T ss_pred             -----------------HHHHHHHHHHHHHHHH------cCCCcEEEEecCcH-HHHHHHHhc----CCceEEEechhhE
Confidence                             0234457888888874      34899999999998 999999886    5799999999999


Q ss_pred             ccccccC--CCCCceEEcCCCCChhhHHHHHHHHhcCCee-EEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHH
Q 013050          269 FSAEEIP--DGDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW  345 (450)
Q Consensus       269 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  345 (450)
                      ++.+.+.  .++..++++||+|...+++++|+++.+|... +++||+.|+....|..+   |  .+.|+.+....++.++
T Consensus       216 lt~~~~~~~~~~~~~k~~PPLR~~~dr~aL~~al~dG~id~~iaTDHaPh~~~eK~~~---~--g~~Gi~~~~~~L~l~~  290 (359)
T 3pnu_A          216 ITLDDVIGGKMNPHLFCKPIAKRYEDKEALCELAFSGYEKVMFGSDSAPHPKDTKECC---G--CAAGVFSAPVILPVLA  290 (359)
T ss_dssp             CCHHHHHTSSCCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCBC---------C--CCSCBCCGGGHHHHHH
T ss_pred             EcHHHhcCcCCCCceEEcCCCCCHHHHHHHHHHHhcCCCCEEEecCCCCCCHHHhCCC---C--CCCChhhHHHHHHHHH
Confidence            9988864  3588899999999999999999999999999 79999999988877432   2  3457777778888887


Q ss_pred             HHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCcccc-CCceEeeEEE
Q 013050          346 SYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVL  423 (450)
Q Consensus       346 ~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~  423 (450)
                      +.+ +.+++++++++..+.|||+++|++.    .+|  |||+|+|  .+|++..+ .+.++.. ++|| +|..+.++|.
T Consensus       291 ~~~-~~~~~l~~lv~~~s~nPAki~gL~~----~~G--Adlvl~d--~~~~v~~~-~~~s~~~-~tPf~~G~~l~G~v~  358 (359)
T 3pnu_A          291 ELF-KQNSSEENLQKFLSDNTCKIYDLKF----KED--KILTLEE--KEWQVPNV-YEDKYNQ-VVPYMAGEILKFQLK  358 (359)
T ss_dssp             HHH-HHHSCHHHHHHHHTHHHHHHHTCCC----SSC--CEEEEEC--CCEECCSC-EECSSCE-ECCTTTTCEESCEEC
T ss_pred             HHH-hhcCCHHHHHHHHHHhHHHHhCCCC----CCC--CeEEEEe--cCEEeCch-hcccCCC-ccccCCCCEEEEEEe
Confidence            766 4457999999999999999999931    134  9999999  66998887 7788877 9999 9999888874

>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A

Probab=100.00  E-value=8.1e-37  Score=303.24  Aligned_cols=375  Identities=17%  Similarity=0.161  Sum_probs=246.0

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      ..++|+|+||+|++|++....    .+.++||++|++|+|||||+|+|+..+...     ....+.+++.|||++++++.
T Consensus        39 ~~~~v~i~~g~I~~i~~~~~~----~~~~~iD~~g~~v~PG~iD~H~H~~~~~~~-----~~~~~~~~~~G~Tt~~~~~~  109 (496)
T 1rk6_A           39 RLADVGVRGDRIAAVGDLSAS----SARRRIDVAGKVVSPGFIDSHTHDDNYLLK-----HRDMTPKISQGVTTVVTGNC  109 (496)
T ss_dssp             EECEEEEETTEEEEEECCTTS----CBSCEEECTTCEEEECEEESSCCCTTHHHH-----CTTCHHHHTTTEEEEEESCT
T ss_pred             eccEEEEECCEEEEecCCCCC----CCCeEEeCCCCEEecCEeeeeecCCccccc-----cHHHHHHHcCCeEEEEeCCC
Confidence            457899999999999975321    346799999999999999999999754321     12356789999999998852


Q ss_pred             C--CCCCC--C--------------cHHHHHHHHHHHhc-CCceEEEEecccc----------C--CCccchHHHHHH--
Q 013050           82 N--SDPST--I--------------STETLKLKVDAAEK-RIYVDVGFWGGLV----------P--ENAYNASALEAL--  128 (450)
Q Consensus        82 ~--~~~~~--~--------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------~--~~~~~~~~~~~~--  128 (450)
                      +  ..|..  +              ....+..+.+.+.. ...+++..+.+..          .  ...+..+.++.+  
T Consensus       110 g~~~~p~~~~~l~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  189 (496)
T 1rk6_A          110 GISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAPPAVNAACMVGHSTLRAAVMPDLRREATADEIQAMQALAD  189 (496)
T ss_dssp             TCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHHHSCCSSEEEEEEEHHHHHHHHCSCCSSCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCChHHHHHhhcccCcccccCccCHHHHHHHHhccCCccceEEecccccceeeeccccccCCCHHHHHHHHHHHH
Confidence            2  22211  0              01223333344433 3344554432110          0  111223333333  


Q ss_pred             --HHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChH
Q 013050          129 --LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS  206 (450)
Q Consensus       129 --~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  206 (450)
                        .+.|+.+++....+..   .+..+.+++.++++.+++++.++.+|+++...                           
T Consensus       190 ~~~~~G~~~~~~~~~~~~---~~~~~~~el~~~~~~a~~~g~~v~~H~~~~~~---------------------------  239 (496)
T 1rk6_A          190 DALASGAIGISTGAFYPP---AAHASTEEIIEVCRPLITHGGVYATHMRDEGE---------------------------  239 (496)
T ss_dssp             HHHHHTCCEEEEETTSGG---GTTCCHHHHHHHHTHHHHHTCEEEEECSCSST---------------------------
T ss_pred             HHHHcCCcEEeeccccCC---CCCCCHHHHHHHHHHHHHcCCEEEEEeCCCcc---------------------------
Confidence              4689988876543311   02457788999999999999999999964321                           


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCceEEEEecCC--------hhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC-
Q 013050          207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD--------ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG-  277 (450)
Q Consensus       207 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~--------~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~-  277 (450)
                      ++.+.+.++++++++.       +.++|+.|++.        .++.++.+++++..| .++++.++++...+...+... 
T Consensus       240 ~~~~~l~~~~~~a~~~-------g~~v~i~H~~~~~~~~~g~~~~~~~~l~~a~~~g-~v~~~~~~~~~~~~~~~~~~l~  311 (496)
T 1rk6_A          240 HIVQALEETFRIGREL-------DVPVVISHHKVMGKLNFGRSKETLALIEAAMASQ-DVSLDAYPYVAGSTMLKQDRVL  311 (496)
T ss_dssp             THHHHHHHHHHHHHHH-------TSCEEECSCCCCSGGGTTTHHHHHHHHHHHHHHS-CEEEEECSCSCEEEECCCCTTT
T ss_pred             cHHHHHHHHHHHHHHc-------CCeEEEEEEeccCCcchhhHHHHHHHHHHHHHcC-CeEEEEeccCCCCCcccHHHhc
Confidence            3456678888888877       89999999942        225678888887788 888887776544332222211 


Q ss_pred             ---CCceEEcCCC--------------CChhhHHHHHHHHhcCC-----------------eeEEcCCCCCCChhhhccc
Q 013050          278 ---DTRFKCAPPI--------------RDAANKEKLWEALMDGH-----------------IDMLSSDHSPTVPELKLLD  323 (450)
Q Consensus       278 ---~~~~~~~~~~--------------~~~~~~~~l~~~~~~g~-----------------~~~~gtD~~~~~~~~~~~~  323 (450)
                         +..+..+|+.              +.......+|++++.|+                 .+++|||+.|.+..     
T Consensus       312 ~~~~~~v~~~p~~~~l~~~~l~~~~~~~g~~~~~~l~~~l~~G~i~~~~~~~~v~~~~~~~~~~iGTD~~~~~~~-----  386 (496)
T 1rk6_A          312 LAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDER-----  386 (496)
T ss_dssp             TSSCEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTTEEECCCCCTTCSS-----
T ss_pred             CccceEEeccCCCcccccCcHHHHHHHcCCCHHHHHHHHHhcCceeecCCHHHHHHHHcCCCEEEecCCCCCCCC-----
Confidence               1223333332              22344667788888887                 57999998765310     


Q ss_pred             CCCccccCCCCcchhhHHHHHHHHHH-hc-CCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCC
Q 013050          324 EGNFLKAWGGISSLQFVLPVTWSYGR-KY-GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH  401 (450)
Q Consensus       324 ~~~~~~~~~g~~~~~~~~~~~~~~~~-~~-gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~  401 (450)
                               ........++..+.... +. .+|++++++++|.|||++||+++.|+|++|+.|||||+|.++..+...  
T Consensus       387 ---------~~~~~~~~~~~~l~~~v~~~~~l~~~~~l~~~T~~~A~~lgl~~~G~i~~G~~ADlv~~d~~~~~~~~~--  455 (496)
T 1rk6_A          387 ---------PHPRLWGTFPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFGLAERGQVQPGYYADLVVFDPATVADSAT--  455 (496)
T ss_dssp             ---------CCTHHHHHHHHHHCCCCCCTCSSCHHHHHHTTTHHHHHHHTCTTCSSCCTTSBCCEEEECTTTCBCCCC--
T ss_pred             ---------CCchhhccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCcccEEEEcCcccccccc--
Confidence                     00111222344433322 23 499999999999999999999558999999999999999886432211  


Q ss_pred             CcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCccccc
Q 013050          402 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA  449 (450)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~~  449 (450)
                       +      .+++   ...++|..||++|++||++|++++...|+++++
T Consensus       456 -~------~~~~---~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~l~~  493 (496)
T 1rk6_A          456 -F------EHPT---ERAAGIHSVYVNGAAVWEDQSFTGQHAGRVLNR  493 (496)
T ss_dssp             -S------SSTT---CCCBSEEEEEETTEEEEETTEECSCCCCCBCCC
T ss_pred             -c------cccc---ccCCCceEEEECCEEEEECCeeccCCCceEeec
Confidence             0      1121   123579999999999999999999999999975

>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*

Probab=100.00  E-value=1.6e-35  Score=279.03  Aligned_cols=332  Identities=17%  Similarity=0.183  Sum_probs=258.4

Q ss_pred             CCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc--eEEEEec
Q 013050           35 GEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY--VDVGFWG  112 (450)
Q Consensus        35 ~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  112 (450)
                      .+++|+||+||+|+|+.. +..     ....+.+++.|||++++++ ++.|.....+.+..+.+.+.....  .++..++
T Consensus         4 ~~~~v~PG~ID~HvH~~~-g~~-----~~e~~aa~~gGvTtvv~mp-nt~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (347)
T 2z26_A            4 SQVLKIRRPDDWHLHLRD-GDM-----LKTVVPYTSEIYGRAIVMP-NLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLM   76 (347)
T ss_dssp             CCEEEEECCCEEEECCCS-HHH-----HHHHHHHHHTTCSEEEECC-CCSSCCCSHHHHHHHHHHHHHTSCTTCCCEEEE
T ss_pred             CCeEECCCcceeeecCCC-CCc-----hhhHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHHhcccCCcccEEEEE
Confidence            357999999999999987 432     2345788999999999999 888888888888887777765433  4444445


Q ss_pred             cccCCCccchHHHHHHHHcCC-cEEEEecccCCCC-CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCc
Q 013050          113 GLVPENAYNASALEALLNAGV-LGLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT  190 (450)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~  190 (450)
                      .+........+++..+.+.|+ .++|.|+.++..+ +.+..+.+.+.++++.+++.|.++.+|+++....          
T Consensus        77 ~~~~~~~~~~~ei~~l~~~G~~~g~K~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~vH~ed~~~~----------  146 (347)
T 2z26_A           77 TCYLTDSLDPNELERGFNEGVFTAAKLYPANATANSSHGVTSVDAIMPVLERMEKIGMPLLVHGEVTHAD----------  146 (347)
T ss_dssp             EEECCTTCCHHHHHHHHHTTSEEEEEECCCCTTCCTTTCCSCGGGGHHHHHHHHHHTCCEEECCCCCCTT----------
T ss_pred             EEEeCCCCCHHHHHHHHHCCCeEEEEEeecCCcCCCCCccCCHHHHHHHHHHHHHhCCEEEEEecCCccc----------
Confidence            432222223677888888998 8999998875322 3445688999999999999999999999764310          


Q ss_pred             CCccccccccCCCChHHHHHHHHHHH--HHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhc
Q 013050          191 LDTRSYSTYLKTRPPSWEEAAIRELL--TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLA  268 (450)
Q Consensus       191 ~~~~~~~~~~~~~p~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~  268 (450)
                      .           .+...|...+.+.+  .+++.       ++.++|+.|+++. ++++.+++++   ..|++++||++++
T Consensus       147 ~-----------~~~~~E~~~~~~~i~~~la~~-------~~~~~hi~Hvst~-~~~~~i~~ak---~~Vt~e~~ph~L~  204 (347)
T 2z26_A          147 I-----------DIFDREARFIESVMEPLRQRL-------TALKVVFEHITTK-DAADYVRDGN---ERLAATITPQHLM  204 (347)
T ss_dssp             S-----------CGGGHHHHHHHHTHHHHHHHS-------TTCCEEECSCCSH-HHHHHHHTSC---TTEEEEECHHHHH
T ss_pred             c-----------CHHHHHHHHHHHHHHHHHHhh-------cCCcEEEEECCcH-HHHHHHHHhC---CCceEeecchHhe
Confidence            0           01113555667766  46663       4899999999998 8999888864   4799999999999


Q ss_pred             ccccccCC--CCCceEEcCCCCChhhHHHHHHHHhcCCee-EEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHH
Q 013050          269 FSAEEIPD--GDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW  345 (450)
Q Consensus       269 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  345 (450)
                      ++.+.+..  ++..++++||+|...+++.+|+++..|... +++||+.|+....+..   .+.  ..|+.+.+..++.++
T Consensus       205 l~~~~~~~~~~~~~~k~~PPLR~~~d~~aL~~~l~~G~id~~i~SDhaP~~~~~K~~---~~g--~~Gi~~~e~~l~l~~  279 (347)
T 2z26_A          205 FNRNHMLVGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKES---SCG--CAGCFNAPTALGSYA  279 (347)
T ss_dssp             CCHHHHHTTSBCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHSS---SSB--CCCCCCTTTHHHHHH
T ss_pred             ecHHHhcCcCCCccEEEeCCCCCHHHHHHHHHHHhcCCCCeEEecCCCCCCHHHhcC---CCC--CCCcCcHHHHHHHHH
Confidence            99887643  678899999999999999999999999998 7999999998776643   222  357777798899888


Q ss_pred             HHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCcccc-CCceEeeEEE
Q 013050          346 SYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVL  423 (450)
Q Consensus       346 ~~~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~  423 (450)
                      ... +.++|+++++++.|.|||++||+ ++.|+|        +|+  +..+++..+ .+.++.. ++|| +|..+.++|.
T Consensus       280 ~~~-~~~~sl~~~v~~~s~nPAki~gl~~~kG~i--------~l~--~~~~~v~~~-~~~s~~~-~sPf~~G~~l~g~v~  346 (347)
T 2z26_A          280 TVF-EEMNALQHFEAFCSVNGPQFYGLPVNDTFI--------ELV--REEQQVAES-IALTDDT-LVPFLAGETVRWSVK  346 (347)
T ss_dssp             HHH-HHTTCGGGHHHHHHTHHHHHHTCCCCCCEE--------EEE--CCCEECCSC-EECSSSE-ECCTTTTCEESCEEC
T ss_pred             HHh-hcCCCHHHHHHHHhHhHHHHhCCCCCCCeE--------EEE--cceEEEchh-hccccCC-cccccCCcEEEeEEe
Confidence            744 56799999999999999999999 457875        677  556888877 7888888 9999 6998888774

>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A*

Probab=100.00  E-value=4.1e-35  Score=287.85  Aligned_cols=360  Identities=15%  Similarity=0.086  Sum_probs=213.5

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCC---Cc---------------------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR---TE---------------------   57 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~---~~---------------------   57 (450)
                      .+++|+|+||+|++|++..+.+ ..++.++||++|++|+|||||+|+|+....+   ..                     
T Consensus        26 ~~~~v~i~~g~I~~vg~~~~~~-~~~~~~viD~~g~~v~PGlID~H~Hl~~~~~~g~~~~~~~~~wl~~~~~~~~~~~~~  104 (447)
T 4f0r_A           26 ENHAIAIRDGKIAAIIPAADAA-GLEADERLELPDHVLMPGLINLHGHSAMSLLRGLADDKALMDWLTNYIWPTEGKHVH  104 (447)
T ss_dssp             EEEEEEEETTEEEEEEEHHHHT-TSCEEEEEEEEEEEEEECEEEEEECGGGGGGTTSSCSSCHHHHHHHTHHHHHHHHCS
T ss_pred             eceEEEEECCEEEEEecccccc-cCCCCeEEeCCCcEEeeCccchhhChhhHhhccCCCCCCHHHHHHHhhhhhhhccCC
Confidence            4689999999999999865432 2346789999999999999999999943211   00                     


Q ss_pred             ccchH----HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccC---CCccchHHHHHHHH
Q 013050           58 WEGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP---ENAYNASALEALLN  130 (450)
Q Consensus        58 ~~~~~----~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  130 (450)
                      .++..    ....+++++|||+++++. .      ..............+.............   ...+..+...++.+
T Consensus       105 ~e~~~~~~~~~~~~~l~~GvTtv~d~~-~------~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (447)
T 4f0r_A          105 DDFVFDGSLLAMGEMIRGGTTTINDMY-F------YNAAVARAGLASGMRTFVGCSILEFPTNYASNADDYIAKGMAERS  177 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEEEEEECB-S------CHHHHHHHHHHHTCEEEEEEEECSSCCSSCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcEEEEEcc-c------CHHHHHHHHHHcCCeEEEEchhcCCCcccccCHHHHHHHHHHHHH
Confidence            01111    234568889999999985 1      1222222222222222222222211111   11123344445544


Q ss_pred             c--CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCh-hhhhhhhhhccCcCCccccccccCCCChHH
Q 013050          131 A--GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKTRPPSW  207 (450)
Q Consensus       131 ~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  207 (450)
                      .  |...++....+.   .....+.+.+.++++.|+++|+++.+|+.+. ..+...+...+                   
T Consensus       178 ~~~~~~~i~~~~~~~---~~~~~~~~~l~~~~~~A~~~g~~v~iH~~~~~~~~~~~~~~~g-------------------  235 (447)
T 4f0r_A          178 QFLGEDLLTFTLAPH---APYTVSDDTFRKVVTLAEQEDMLIHCHIHETADEVNNSVKEHG-------------------  235 (447)
T ss_dssp             TTTTCTTEEEEEEEC---CGGGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHHS-------------------
T ss_pred             HhcCCCceEEEEecC---CCCCCCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcC-------------------
Confidence            3  444444433332   2235788999999999999999999999544 22222221111                   


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCC
Q 013050          208 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI  287 (450)
Q Consensus       208 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (450)
                           ...++.+.+.  +  ..+.+..+.|+..  -+.+.++.+++.|+.+..  ||........               
T Consensus       236 -----~~~i~~~~~~--g--~~~~~~~~~H~~~--~~~~~~~~~~~~g~~~~~--~p~~~~~~~~---------------  287 (447)
T 4f0r_A          236 -----QRPLARLQRL--G--LLSPRLVAAHMVH--LNDAEVELAARHGLSTAH--NPASNMKLAS---------------  287 (447)
T ss_dssp             -----SCHHHHHHHH--T--CCSTTEEEEECCS--CCHHHHHHHHHHTCEEEE--CHHHHHHTTC---------------
T ss_pred             -----CCHHHHHHHc--C--CCCCCcEEEeccC--CCHHHHHHHHHcCCEEEE--CchhhhhcCC---------------
Confidence                 0011222221  0  1144566777775  233456666666765544  6653221100               


Q ss_pred             CChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH---hcCCCHHHHHHHHhh
Q 013050          288 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLASWWSE  364 (450)
Q Consensus       288 ~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~gls~~~al~~aT~  364 (450)
                          ....+..+++.|+.++++||+.+.+....++              .+..+........   ..++|++++++++|.
T Consensus       288 ----~~~~~~~~~~~Gv~v~lgTD~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~  349 (447)
T 4f0r_A          288 ----GISPVSKLMDAGVAVGIGTDGAASNNKLDML--------------AETRLAALLAKVGTLDPTSVPAAAAIRMATL  349 (447)
T ss_dssp             ----CCCCHHHHHHTTCEEEECCCCGGGTCCCCHH--------------HHHHHHHHHHHHHHTCTTSSCHHHHHHHHTH
T ss_pred             ----CCCcHHHHHHCCCcEEEeCCCCcCCCCCCHH--------------HHHHHHHHHhhhhccCCCCCCHHHHHHHHHH
Confidence                0112466788999999999975432111100              0111111122221   458999999999999


Q ss_pred             chhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCce---EeeEEEEEEECCeEEEecCcccC
Q 013050          365 RPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR---LSGKVLATISRGNLVYKEGNHAP  440 (450)
Q Consensus       365 ~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~v~v~G~~v~~~g~~~~  440 (450)
                      |||+++|+ +++|+|++||.|||||+|.++.+..+..          +|+....   ...+|..||++|++||++|++++
T Consensus       350 n~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~----------~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~  419 (447)
T 4f0r_A          350 NGARALGIADKVGSVKVGKQADLIALDLAQLETAPAF----------DPISHVVYAAGREQVSHVWVKGRALMRERKLTT  419 (447)
T ss_dssp             HHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCSCS----------CHHHHHHHTCCGGGEEEEEETTEEEEETTEESS
T ss_pred             HHHHHhCCCCCccccCCCCcCCEEEEeCCCCCcCCCc----------ChHHHheecCCCCCceEEEECCEEEEECCeECc
Confidence            99999999 6689999999999999998875443322          1211111   12579999999999999999998


Q ss_pred             CCCCccc
Q 013050          441 AACGSPI  447 (450)
Q Consensus       441 ~~~g~~~  447 (450)
                      .+.++.+
T Consensus       420 ~d~~~~~  426 (447)
T 4f0r_A          420 LDESDLK  426 (447)
T ss_dssp             SCHHHHH
T ss_pred             CCHHHHH
Confidence            7655543

>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica}

Probab=100.00  E-value=1.9e-34  Score=284.80  Aligned_cols=358  Identities=14%  Similarity=0.071  Sum_probs=210.3

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC---CCC---------------------c
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---GRT---------------------E   57 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~---~~~---------------------~   57 (450)
                      .+++|+|+||+|++|++..+.  ..++.++||++|++|+|||||+|+|+...   +..                     .
T Consensus        49 ~~~~v~i~~g~I~~vg~~~~~--~~~~~~viD~~g~~v~PGlID~H~H~~~~~~~g~~~~~~l~~wl~~~~~~~~~~~~~  126 (468)
T 3lnp_A           49 IDHCLLIKDGIILAIEPQSSC--QIPATETLDLGQQVLMPGWVNAHGHAAMSLFRGLADDLPLMTWLQEHVWPAEAQHVD  126 (468)
T ss_dssp             EEEEEEEETTEEEEEEETTTC--CCCEEEEEECCSEEEEECEEECSCCGGGGGGTTSSCSCCHHHHHHHTHHHHHHHHCS
T ss_pred             cceEEEEECCEEEEEeCCccc--cCCCCeEEeCCCcEEEeCeechhhChhhhhhccCcCCCCHHHHHHHhhhhhhhccCC
Confidence            368899999999999987641  12467899999999999999999999432   110                     0


Q ss_pred             ccc----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC---CccchHHHHHHHH
Q 013050           58 WEG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE---NAYNASALEALLN  130 (450)
Q Consensus        58 ~~~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  130 (450)
                      .+.    ......+++++|||+++++. .      ....+.........+..............   ..+..+...++.+
T Consensus       127 ~~~~~~~~~~~~~~~l~~GvTtv~d~~-~------~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (468)
T 3lnp_A          127 EHFVKQGTELAIAEMIQSGTTTFADMY-F------YPQQSGEAALAAGIRAVCFAPVLDFPTNYAQNADEYIRKAIECND  199 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEEEEEECC-S------CHHHHHHHHHHHTCEEEEEEEECSSCCSSCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcEEEEEcc-c------CHHHHHHHHHHcCCeEEEeccccCCCcccccCHHHHHHHHHHHHH
Confidence            011    11234567999999999984 1      12233332222222212222222111111   1122333333333


Q ss_pred             c--CCc-----EEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCh-hhhhhhhhhccCcCCccccccccCC
Q 013050          131 A--GVL-----GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKT  202 (450)
Q Consensus       131 ~--g~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  202 (450)
                      .  +..     .++....+   ...+.++.+.+.++++.|+++|+++.+|+.+. ..+...+...+              
T Consensus       200 ~~~~~~~~~~g~i~~~~~~---~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g--------------  262 (468)
T 3lnp_A          200 RFNNHPMNEQGLVQIGFGP---HAPYTVSDEPLKEITMLSDQLDMPVQIHLHETDFEVSESLETFN--------------  262 (468)
T ss_dssp             HHHSCGGGTTCCEEEEEEE---CCTTTSCHHHHHHHHHHHHHHTCCEEEEESCSHHHHHHHHHHHS--------------
T ss_pred             HhhcCCcccCceEEEEEEc---CCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC--------------
Confidence            1  222     23333322   22245788999999999999999999999543 22222221111              


Q ss_pred             CChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceE
Q 013050          203 RPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFK  282 (450)
Q Consensus       203 ~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~  282 (450)
                                ...++.+.+.  +  ..+.+..+.|+...  ..+.++.+++.|+.+..  ||........          
T Consensus       263 ----------~~~i~~~~~~--g--~l~~~~~~~H~~~~--~~~~~~~l~~~g~~v~~--~p~s~~~~~~----------  314 (468)
T 3lnp_A          263 ----------KRPTQRLADI--G--FLNERVSCVHMTQV--DDGDIKILQKTGASIIH--CPESNLKLAS----------  314 (468)
T ss_dssp             ----------SCHHHHHHHT--T--CCSTTEEEEECCSC--CHHHHHHHHHHCCEEEE--CHHHHHHTTC----------
T ss_pred             ----------CCHHHHHHHc--C--CCCCCeEEEeccCC--CHHHHHHHHhcCCEEEE--ChhhhhhcCC----------
Confidence                      0012222221  1  11455667777652  23446666666755444  6654321110          


Q ss_pred             EcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhH-HHHHHHHH---HhcCCCHHHH
Q 013050          283 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYG---RKYGVTLEQL  358 (450)
Q Consensus       283 ~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~---~~~gls~~~a  358 (450)
                               ....+..+++.|+.+++|||+.+.+....               ..... +...+...   ...++|++++
T Consensus       315 ---------~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~~~~a  370 (468)
T 3lnp_A          315 ---------GFCPIAKLSAANIPLAIGTDGAASNNDLD---------------MFSETKTAALLAKGVSQDASAIPAIEA  370 (468)
T ss_dssp             ---------CCCCHHHHHHTTCCEEECCCCTTSSCCCC---------------HHHHHHHHHHHHHHHHTCTTSSCHHHH
T ss_pred             ---------CCCCHHHHHHCCCeEEEECCCCcCCCCCC---------------HHHHHHHHHHHhhhccCCCCcCCHHHH
Confidence                     01124567889999999999765421111               11111 11111111   1458999999


Q ss_pred             HHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCce---EeeEEEEEEECCeEEEe
Q 013050          359 ASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR---LSGKVLATISRGNLVYK  434 (450)
Q Consensus       359 l~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~v~v~G~~v~~  434 (450)
                      ++++|.|||+++|+ +++|+|++||.|||||+|.++....+..          +|+...+   ...+|..|||+|++||+
T Consensus       371 l~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~----------~~~~~~~~~~~~~~v~~v~v~G~~v~~  440 (468)
T 3lnp_A          371 LTMATLGGARALGIDDITGSLKPGKAADIQAIDLNTLSSQPVF----------DPVSHMVYCTKSTQVSHVWVNGRCLLK  440 (468)
T ss_dssp             HHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCSCS----------CHHHHHHHSCCGGGEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHhCCCCCccccCCCCcCCEEEEeCCCCccCCcc----------CHHHHhhccCCCCCceEEEECCEEEEE
Confidence            99999999999999 6689999999999999998875433222          1221111   12579999999999999


Q ss_pred             cCcccCCCCCccc
Q 013050          435 EGNHAPAACGSPI  447 (450)
Q Consensus       435 ~g~~~~~~~g~~~  447 (450)
                      +|++++.+.++.+
T Consensus       441 ~g~~~~~d~~~~~  453 (468)
T 3lnp_A          441 NGELTTLNEETLI  453 (468)
T ss_dssp             TTEESSSCHHHHH
T ss_pred             CCeECCCCHHHHH
Confidence            9999977655443

>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A*

Probab=100.00  E-value=1.2e-34  Score=285.34  Aligned_cols=361  Identities=14%  Similarity=0.098  Sum_probs=207.0

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcc-----cc-------h--------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW-----EG-------F--------   61 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~-----~~-------~--------   61 (450)
                      .+++|+|+||+|++|++..+.   .++.++||++|++|+|||||+|+|+........     ..       +        
T Consensus        21 ~~~~v~i~~g~I~~vg~~~~~---~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~g~~~~~~~~l~~~l~~~~~~~~~~~   97 (456)
T 3ls9_A           21 EDADILIDGPKIVAVGKDLSD---RSVSRTIDGRGMIALPGLINSHQHLYEGAMRAIPQLERVTMASWLEGVLTRSAGWW   97 (456)
T ss_dssp             EEEEEEEETTEEEEEESSCCC---TTCSEEEECTTEEEEECEEEEEECGGGGGGBTCGGGSSCCHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEECCEEEEeCCCCCC---CCCCeEEeCCCCEEecCeeecccccchhhhcccccCCCCCHHHHHHHhcccccccc
Confidence            468999999999999987432   246789999999999999999999954322100     00       0        


Q ss_pred             --------------HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEE-eccccC----------
Q 013050           62 --------------PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF-WGGLVP----------  116 (450)
Q Consensus        62 --------------~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------  116 (450)
                                    .....+++++|||++.+++ ...+.......+....+..... .++... .+....          
T Consensus        98 ~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~~~~~~~~~~~~a~~~~-g~r~~~~~~~~~~~~~~~~~~~~  175 (456)
T 3ls9_A           98 RDGKFGPDVIREVARAVLLESLLGGITTVADQH-LFFPGATADSYIDATIEAATDL-GIRFHAARSSMTLGKSEGGFCDD  175 (456)
T ss_dssp             HTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEE-CCCCSSSCCTHHHHHHHHHHHH-TCEEEEEECCCCCCGGGTCSSCG
T ss_pred             ccccCCHHHHHHHHHHHHHHHHhCCeeEEEecc-ccccCcccchhHHHHHHHHHHc-CCEEEEEccccccccccccCCcc
Confidence                          1123457899999999995 3333221111222222222211 112111 111110          


Q ss_pred             ----CCccchHHHHHHHHc--C---CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhc
Q 013050          117 ----ENAYNASALEALLNA--G---VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLE  187 (450)
Q Consensus       117 ----~~~~~~~~~~~~~~~--g---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~  187 (450)
                          ......+...++++.  +   ...+.....+   ...+.++.+.++++++.|+++|+++.+|+.+.......+...
T Consensus       176 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~  252 (456)
T 3ls9_A          176 LFVEPVDRVVQHCLGLIDQYHEPEPFGMVRIALGP---CGVPYDKPELFEAFAQMAADYDVRLHTHFYEPLDAGMSDHLY  252 (456)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHCCCSTTCSEEEEECC---CCTTTSCHHHHHHHHHHHHHHTCEEEEEECCTTHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHHhhCcCCCCceEEEEec---CCCCCCCHHHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHh
Confidence                001123333444331  1   1122222222   222467899999999999999999999995543211111110


Q ss_pred             cCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchh
Q 013050          188 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL  267 (450)
Q Consensus       188 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~  267 (450)
                      +                        ....+.+.+..    ..+.+..+.|+...  +.+.++.+++.|+.+.  +||...
T Consensus       253 ~------------------------~~~~~~~~~~g----~~~~~~~i~H~~~~--~~~~~~~l~~~g~~~~--~~p~s~  300 (456)
T 3ls9_A          253 G------------------------MTPWRFLEKHG----WASDRVWLAHAVVP--PREEIPEFADAGVAIA--HLIAPD  300 (456)
T ss_dssp             S------------------------SCHHHHHHHTT----CSSTTEEEEECCSC--CGGGHHHHHHHTCEEE--ECHHHH
T ss_pred             C------------------------CCHHHHHHHcC----CCCCCcEEEeccCC--CHHHHHHHHHcCCEEE--EChhHH
Confidence            0                        00112222210    11344556666542  1124555555665554  477543


Q ss_pred             cccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH
Q 013050          268 AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY  347 (450)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  347 (450)
                      .....                   ....+..+++.|+.+++|||+.+.+....+               ... +......
T Consensus       301 ~~l~~-------------------~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~~---------------~~~-~~~~~~~  345 (456)
T 3ls9_A          301 LRMGW-------------------GLAPIREYLDAGITVGFGTTGSASNDGGNL---------------LGD-LRLAALA  345 (456)
T ss_dssp             HHTTC-------------------CCCCHHHHHHTTCEEEECCCCTTSSCCCCH---------------HHH-HHHHHHH
T ss_pred             hhcCC-------------------CcchHHHHHHCCCcEEEECCCCccCCCCCH---------------HHH-HHHHHHH
Confidence            22110                   011245668899999999997654321111               111 1111111


Q ss_pred             HH-------hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE--
Q 013050          348 GR-------KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL--  418 (450)
Q Consensus       348 ~~-------~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  418 (450)
                      .+       +.++|++++++++|.|||+++|++++|+|++||.|||||+|.++....+.          .+|+...++  
T Consensus       346 ~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~~G~l~~G~~ADlvv~d~~~~~~~~~----------~~~~~~~~~~~  415 (456)
T 3ls9_A          346 HRPADPNEPEKWLSARELLRMATRGSAECLGRPDLGVLEEGRAADIACWRLDGVDRVGV----------HDPAIGLIMTG  415 (456)
T ss_dssp             TGGGSTTCGGGSCCHHHHHHHTTHHHHHHTTCTTSSCCSTTSBCCEEEEESCSGGGTTB----------SSHHHHHHHCC
T ss_pred             hccccccccccCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCccCEEEEeCCCCccCCC----------CChHHHhhccC
Confidence            11       11799999999999999999999449999999999999999886443221          223322222  


Q ss_pred             -eeEEEEEEECCeEEEecCcccCCCCCccc
Q 013050          419 -SGKVLATISRGNLVYKEGNHAPAACGSPI  447 (450)
Q Consensus       419 -~~~v~~v~v~G~~v~~~g~~~~~~~g~~~  447 (450)
                       ..+|..|||+|++||++|+++..+.++.+
T Consensus       416 ~~~~v~~v~v~G~~v~~~g~~~~~d~~~~~  445 (456)
T 3ls9_A          416 LSDRASLVVVNGQVLVENERPVLADLERIV  445 (456)
T ss_dssp             SBCCCSEEEETTEEEEETTEESSSCHHHHH
T ss_pred             CCCCeeEEEECCEEEEECCEeCCCCHHHHH
Confidence             24699999999999999999977655443

>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa}

Probab=100.00  E-value=4.1e-35  Score=288.17  Aligned_cols=359  Identities=15%  Similarity=0.110  Sum_probs=210.0

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC---------c---------------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---------E---------------   57 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---------~---------------   57 (450)
                      .+++|+|+||+|++|++..+. ...++.++||++|++|+|||||+|+|+....+.         .               
T Consensus        28 ~~~~v~i~~g~I~~ig~~~~~-~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~g~~~~~~l~~wl~~~~~~~~~~~~~  106 (451)
T 4dyk_A           28 RDHALGIRDGQIALVAPREQA-MRHGATEIRELPGMLLAPGLVNAHGHSAMSLFRGLADDLPLMTWLQDHIWPAEGQWVS  106 (451)
T ss_dssp             ESEEEEEETTEEEEEEEHHHH-TTTCEEEEEEEEEEEEEECEEECCCCGGGGGGTTSSCSSCHHHHHHHTHHHHHHHHCS
T ss_pred             eccEEEEECCEEEEEeCcccc-ccCCCCeEEeCCCCEEeecccchhhChhhHHhccCCCCCCHHHHHHHhhhhhhhccCC
Confidence            468999999999999976432 112467899999999999999999999432110         0               


Q ss_pred             ccchH----HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC---CccchHHHHHHHH
Q 013050           58 WEGFP----SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE---NAYNASALEALLN  130 (450)
Q Consensus        58 ~~~~~----~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  130 (450)
                      .+++.    ....+++++|||+++++. .      ....+.........+..............   .....+...++.+
T Consensus       107 ~e~~~~~~~~~~~~~l~~GvTtv~d~~-~------~~~~~~~a~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (451)
T 4dyk_A          107 EDFIRDGTELAIAEQVKGGITCFSDMY-F------YPQAICGVVHDSGVRAQVAIPVLDFPIPGARDSAEAIRQGMALFD  179 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEEEEEEEC-S------CHHHHHHHHHHHTCEEEEEEEECSSCBTTBSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcEEEEEcc-c------CHHHHHHHHHHcCCeEEEEchhhCCCCccccCHHHHHHHHHHHHH
Confidence            01111    234467799999999985 1      12333333332222222222222111111   1122333344433


Q ss_pred             --cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCh-hhhhhhhhhccCcCCccccccccCCCChHH
Q 013050          131 --AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKTRPPSW  207 (450)
Q Consensus       131 --~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  207 (450)
                        .+...++....+   ...+.++.+.+.++++.|+++|+++.+|+.+. ..+...+...+                   
T Consensus       180 ~~~~~~~v~~~~~~---~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g-------------------  237 (451)
T 4dyk_A          180 DLKHHPRIRIAFGP---HAPYTVSDDKLEQILVLTEELDASIQMHVHETAFEVEQAMERNG-------------------  237 (451)
T ss_dssp             HTTTCSSEEEEEEE---CCGGGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHHS-------------------
T ss_pred             HhcCCCceEEEEec---CCCCccCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC-------------------
Confidence              133333333222   22245788999999999999999999999543 22222221111                   


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCC
Q 013050          208 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI  287 (450)
Q Consensus       208 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (450)
                           ...++.+.+.  +  ..+.+..+.|+...  +.+.++.+++.|+.+..  ||........          ..   
T Consensus       238 -----~~~i~~~~~~--g--~~~~~~~~~H~~~~--~~~~~~~l~~~g~~v~~--~p~s~~~~~~----------~~---  291 (451)
T 4dyk_A          238 -----ERPLARLHRL--G--LLGPRFQAVHMTQV--DNDDLAMLVETNSSVIH--CPESNLKLAS----------GF---  291 (451)
T ss_dssp             -----SCHHHHHHHT--T--CCSTTEEEEECCCC--CHHHHHHHHHHTCEEEE--CHHHHHHTTC----------CC---
T ss_pred             -----CCHHHHHHHC--C--CCCCCeEEEECCCC--CHHHHHHHHHcCCEEEE--ChhhhhhccC----------Cc---
Confidence                 0011222221  0  11445666777652  23446666666765544  6653321110          01   


Q ss_pred             CChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhH-HHHHHHHHH---hcCCCHHHHHHHHh
Q 013050          288 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYGR---KYGVTLEQLASWWS  363 (450)
Q Consensus       288 ~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~---~~gls~~~al~~aT  363 (450)
                            ..+..+++.|+.+++|||+.+.+...+               ..... .........   ..++|++++++++|
T Consensus       292 ------~~~~~~~~~Gv~v~lgtD~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T  350 (451)
T 4dyk_A          292 ------CPVEKLWQAGVNVAIGTDGAASNNDLD---------------LLGETRTAALLAKAVYGQATALDAHRALRMAT  350 (451)
T ss_dssp             ------CCHHHHHHHTCCEEECCCCGGGSSCCC---------------HHHHHHHHHHHHHHHHTCTTSSCHHHHHHHHT
T ss_pred             ------ccHHHHHhCCCeEEEECCCCccCCCCC---------------HHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHH
Confidence                  124566788999999999764321111               11111 111112211   45899999999999


Q ss_pred             hchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCce---EeeEEEEEEECCeEEEecCccc
Q 013050          364 ERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR---LSGKVLATISRGNLVYKEGNHA  439 (450)
Q Consensus       364 ~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~v~v~G~~v~~~g~~~  439 (450)
                      .|||+++|+ +++|+|++||.|||||+|.++....+.          ++|+...+   ...+|..|||+|++||++|+++
T Consensus       351 ~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~----------~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~  420 (451)
T 4dyk_A          351 LNGARALGLERLIGSLEAGKAADLVAFDLSGLAQQPV----------YDPVSQLIYASGRDCVRHVWVGGRQLLDDGRLL  420 (451)
T ss_dssp             HHHHHHHTCTTTSSSCCTTSBCCEEEEECCSGGGCSC----------SCHHHHHHHHCCGGGEEEEEETTEEEEETTEES
T ss_pred             HHHHHHcCCCCCCcCcCCCCcCCEEEEeCCCCccCCC----------CCHHHHhhccCCCCCccEEEECCEEEEECCEEC
Confidence            999999999 668999999999999999886432221          22332221   1247999999999999999999


Q ss_pred             CCCCCccc
Q 013050          440 PAACGSPI  447 (450)
Q Consensus       440 ~~~~g~~~  447 (450)
                      +.+.++.+
T Consensus       421 ~~d~~~~~  428 (451)
T 4dyk_A          421 RHDEQRLI  428 (451)
T ss_dssp             SSCHHHHH
T ss_pred             cCCHHHHH
Confidence            77655543

>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A*

Probab=100.00  E-value=2.8e-34  Score=280.08  Aligned_cols=342  Identities=16%  Similarity=0.082  Sum_probs=210.9

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc-----ccc------hHHHHHHHHhC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-----WEG------FPSGTKAAAAG   71 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~-----~~~------~~~~~~~~~~~   71 (450)
                      +++|+|+||+|++|++....+   .+.++||++|++|+|||||+|+|+.......     .+.      .....++++++
T Consensus        24 ~~~i~i~~g~I~~i~~~~~~~---~~~~~iD~~g~~v~PGliD~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  100 (426)
T 2r8c_A           24 GFEILIEDGFIREVSDKPIKS---SNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRR  100 (426)
T ss_dssp             EEEEEEESSBEEEEESSCCCC---SSCEEEECTTCEEEECEEEEEECTTCCSSCHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred             CceEEEECCEEEEEcCCCCCC---CCCeEEECCCCEEcCCeEeeeeccccccCCchhhccCCHHHHHHHHHHHHHHHHhC
Confidence            578999999999999853322   4678999999999999999999998765421     111      11335677999


Q ss_pred             CceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccc-----------------------------------cC
Q 013050           72 GITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL-----------------------------------VP  116 (450)
Q Consensus        72 GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~  116 (450)
                      |||++++++ ...      ..+....+.... ...++...+..                                   ..
T Consensus       101 GvTtv~d~~-~~~------~~l~~~i~~~~~-~gpri~~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (426)
T 2r8c_A          101 GFTTVRDAG-GAG------YPFKQAVESGLV-EGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCCVRVGALGRVAD  172 (426)
T ss_dssp             TEEEEEECS-SCC------HHHHHHHHTTSS-CCCEEEECCSEEECTTSTTCCCCCSSBCCCSCSSSSBCCTTCCEEECC
T ss_pred             CeEEEEeCC-Cch------HHHHHHHHcCCC-CCCeEEecCCcccCCCCCcccccccccccccccccccccccccccccC
Confidence            999999996 221      123332222111 11222221111                                   01


Q ss_pred             CCccchHHHHHHHHcCCcEEEEecccC-----CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcC
Q 013050          117 ENAYNASALEALLNAGVLGLKSFMCPS-----GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL  191 (450)
Q Consensus       117 ~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~  191 (450)
                      ...+..+.++++.+.|+..+|.+....     ...+.+..+.+.++++++.|+++|++|.+|+....             
T Consensus       173 ~~~~~~~~v~~~~~~g~~~ik~~~~G~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~-------------  239 (426)
T 2r8c_A          173 GVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPA-------------  239 (426)
T ss_dssp             SHHHHHHHHHHHHHHTCSSEEEECBCCSSSSSCCSSCBCSCHHHHHHHHHHHHHTTCCEEEEECSHH-------------
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCCcccccCCHHHHHHHHHHHHHcCCEEEEEeCChH-------------
Confidence            112234567777888999999876421     11223467899999999999999999999996432             


Q ss_pred             CccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccc
Q 013050          192 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA  271 (450)
Q Consensus       192 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~  271 (450)
                                         .+..+++.           +.. .+.|+..  -+.+.++.+++.|+.+.............
T Consensus       240 -------------------~i~~al~~-----------G~~-~i~H~~~--~~~~~~~~~~~~gv~~~pt~~~~~~~~~~  286 (426)
T 2r8c_A          240 -------------------AIARAVRC-----------GVR-TIEHGNL--IDDETARLVAEHGAYVVPTLVTYDALASE  286 (426)
T ss_dssp             -------------------HHHHHHHT-----------TCS-EEEECTT--CCHHHHHHHHHTTCEEECCTHHHHHHHHH
T ss_pred             -------------------HHHHHHHc-----------CCC-EEecCCc--CCHHHHHHHHHcCCeEeechHHHHHHhhh
Confidence                               23333332           322 3567765  34456777777776554322122111111


Q ss_pred             cccCCCCCceEEcCCCC--ChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH
Q 013050          272 EEIPDGDTRFKCAPPIR--DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR  349 (450)
Q Consensus       272 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  349 (450)
                      ...  ..........++  .......+..+++.|+.+++|||+.+.....                     +...+....
T Consensus       287 ~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~Gv~v~lgTD~~~~~~~~---------------------~~~e~~~~~  343 (426)
T 2r8c_A          287 GEK--YGLPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRL---------------------QSDEFRILA  343 (426)
T ss_dssp             TTT--TTCCHHHHTTSTTTGGGHHHHHHHHHHTTCEECCCCCCCGGGGGG---------------------TTHHHHHHT
T ss_pred             ccc--cCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCcc---------------------hHHHHHHHH
Confidence            000  000000001111  1134556778889999999999975221100                     011122333


Q ss_pred             hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEEC
Q 013050          350 KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISR  428 (450)
Q Consensus       350 ~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~  428 (450)
                      +. +|++++|+++|.|||+++|+ +++|+|++||.|||||+|.|+..++.    .....           ..+|..||++
T Consensus       344 ~~-l~~~eal~~aT~~~A~~lg~~~~~G~i~~G~~ADlvvld~~p~~~~~----~~~~~-----------~~~v~~v~~~  407 (426)
T 2r8c_A          344 EV-LSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVD----CLLGQ-----------GEHIPLVMKD  407 (426)
T ss_dssp             TT-SCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTTCGG----GTCSS-----------STTCCEEEET
T ss_pred             hc-CCHHHHHHHHHHHHHHHhCCCCCCccCCCCCcCCEEEECCChHhCHH----HHhCc-----------CCcceEEEEC
Confidence            44 99999999999999999999 67899999999999999988633221    00000           0368999999


Q ss_pred             CeEEEecCcccC
Q 013050          429 GNLVYKEGNHAP  440 (450)
Q Consensus       429 G~~v~~~g~~~~  440 (450)
                      |++|+++++..+
T Consensus       408 G~~v~~~~~~~~  419 (426)
T 2r8c_A          408 GRLFVNELEGHE  419 (426)
T ss_dssp             TEEEEETTC---
T ss_pred             CEEEeccccccc
Confidence            999999987664

>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV}

Probab=100.00  E-value=1.4e-34  Score=285.49  Aligned_cols=359  Identities=14%  Similarity=0.071  Sum_probs=207.9

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc---------c--------------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE---------W--------------   58 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~---------~--------------   58 (450)
                      .+++|+|+||+|++|++..+.+..+++.++||++|++|+|||||+|+|+.......         |              
T Consensus        34 ~~~~v~I~~g~I~~vg~~~~~~~~~~~~~viD~~g~~v~PGlID~H~Hl~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~  113 (472)
T 4dzh_A           34 EDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGLVNAHTHNPMTLLRGVADDLPLMVWLQQHIWPVEAAVIG  113 (472)
T ss_dssp             EEEEEEEETTEEEEEEEHHHHHHHEEEEEEEEEEEEEEEECEEEEEECGGGGGGTTSSCSCCHHHHHHHTHHHHHHHHCS
T ss_pred             cceEEEEECCEEEEEeCchhhhhcCCCCeEEeCCCcEEEECccccccChhhHHhccccCCCCHHHHHHHhhhhhhhccCC
Confidence            46899999999999997643321113568999999999999999999996532110         0              


Q ss_pred             -cch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC---CccchHHHHHHHH
Q 013050           59 -EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE---NAYNASALEALLN  130 (450)
Q Consensus        59 -~~~----~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  130 (450)
                       +..    .....+++++|||+++++. .      ..............+..+...........   ..+..+...++.+
T Consensus       114 ~e~~~~~~~~~~~~~l~~GvTtv~d~~-~------~~~~~~~a~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (472)
T 4dzh_A          114 PEFVADGTTLAIAEMLRGGTTCVNENY-F------FADVQAAVYKQHGFRALVGAVIIDFPTAWASSDDEYFARAGELHD  186 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEEEEEEEC-S------CHHHHHHHHHHTTCEEEEEEEECSSCCSSCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcEEEEEcc-c------CHHHHHHHHHHhCCeEEEEecccCCCcccccCHHHHHHHHHHHHH
Confidence             001    1123458999999999985 1      12222222222211111222222110011   1122333333433


Q ss_pred             c--CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCh-hhhhhhhhhccCcCCccccccccCCCChHH
Q 013050          131 A--GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKTRPPSW  207 (450)
Q Consensus       131 ~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  207 (450)
                      .  +...++....+   .....++.+.++++++.|+++|+++.+|+.+. ..+...+...+                   
T Consensus       187 ~~~~~~~i~~~~~~---~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~~~~g-------------------  244 (472)
T 4dzh_A          187 QWRDDPLISTAFAP---HAPYTVNDANFERVRMLADQLDMPVHLHTHETAQEVADSVAQYG-------------------  244 (472)
T ss_dssp             HHTTCSSEEEEEEE---CCTTTSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHHS-------------------
T ss_pred             HhCCCCceEEEEec---CCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhC-------------------
Confidence            1  22223332222   22235788999999999999999999999543 22222221111                   


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCC
Q 013050          208 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI  287 (450)
Q Consensus       208 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (450)
                       ...++.+.++..        .+.+..+.|+...  +.+.++.+++.|+.+..  ||........               
T Consensus       245 -~~~i~~~~~~g~--------~~~~~~~~H~~~l--~~~~i~~l~~~g~~v~~--~p~s~~~~~~---------------  296 (472)
T 4dzh_A          245 -QRPLARLDRLGL--------VNDRLIAVHMTQL--TEAEIHLCAERGVSVVH--CPESNLKLAS---------------  296 (472)
T ss_dssp             -SCHHHHHHHHTC--------CSTTEEEEECCSC--CHHHHHHHHHHTCEEEE--CHHHHHHTTC---------------
T ss_pred             -CCHHHHHHHcCC--------CCCCeEEEeccCC--CHHHHHHHHHcCCEEEE--ChHHHHhcCC---------------
Confidence             000111221111        1445667777652  23446666666765544  6654322110               


Q ss_pred             CChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhh-HHHHHHHHH---HhcCCCHHHHHHHHh
Q 013050          288 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF-VLPVTWSYG---RKYGVTLEQLASWWS  363 (450)
Q Consensus       288 ~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~---~~~gls~~~al~~aT  363 (450)
                          ....+..+++.|+.+++|||+.+.+...++               ... .+.......   ...++|++++++++|
T Consensus       297 ----~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~~~l~~~~al~~~T  357 (472)
T 4dzh_A          297 ----GFCPACALQRASVNLAIGTDGCASNNDLDM---------------FSENRTAAILAKAVANDATALDAATTLRAAT  357 (472)
T ss_dssp             ----CCCCHHHHHHTTCEEEECCCCTTSSCCCCH---------------HHHHHHHHHHHHHHHTCTTSSCHHHHHHHHT
T ss_pred             ----CCccHHHHHHCCCCEEEECCCCcCCCCCCH---------------HHHHHHHHHHhhhhcCCCCcCCHHHHHHHHH
Confidence                011245678899999999997643221111               111 111111111   124799999999999


Q ss_pred             hchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCce---EeeEEEEEEECCeEEEecCccc
Q 013050          364 ERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR---LSGKVLATISRGNLVYKEGNHA  439 (450)
Q Consensus       364 ~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~v~v~G~~v~~~g~~~  439 (450)
                      .|||+++|+ +++|+|++||.|||||+|.++....+.          ++|+..++   ...+|..|||+|++||++|+++
T Consensus       358 ~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~----------~~~~~~l~~~~~~~~V~~v~v~G~~v~~~g~~~  427 (472)
T 4dzh_A          358 LGGARALGFGDRIGSIEVGKQADLVCVDLSALETQPL----------HHVLSQLIYAAGRHQVTDVWIAGKPKLVQRELI  427 (472)
T ss_dssp             HHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCSC----------SCHHHHHHHTCCGGGEEEEEETTEEEEETTEET
T ss_pred             HHHHHHcCCCCCCcccCCCCcCCEEEEcCCCCccCCc----------cCHHHHHhhcCCCCCceEEEECCEEEEECCEEC
Confidence            999999999 668999999999999999886442221          22332222   1247999999999999999998


Q ss_pred             CCCCCcc
Q 013050          440 PAACGSP  446 (450)
Q Consensus       440 ~~~~g~~  446 (450)
                      +.+..+.
T Consensus       428 ~~d~~~i  434 (472)
T 4dzh_A          428 DMDTAAL  434 (472)
T ss_dssp             TCCHHHH
T ss_pred             cCCHHHH
Confidence            7665443

>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A*

Probab=100.00  E-value=3.1e-34  Score=279.64  Aligned_cols=338  Identities=16%  Similarity=0.086  Sum_probs=204.7

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc-----ccc------hHHHHHHHHhC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-----WEG------FPSGTKAAAAG   71 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~-----~~~------~~~~~~~~~~~   71 (450)
                      +++|+|+||||++|++....+   .+.++||++|++|+|||||+|+|+.......     .+.      .....++++++
T Consensus        24 ~~~v~I~~g~I~~vg~~~~~~---~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  100 (423)
T 3feq_A           24 HHHVVIDGERIVEVTDRPVDL---PNAQAIDVRGKTVMPGFIDCHVHVLASNANLGVNATQPNILAAIRSLPILDAMLSR  100 (423)
T ss_dssp             EEEEEEETTEEEEEECSCCCC---SSCEEEECTTCEEEECEEEEEECTTCCSSCHHHHHHSCHHHHHHTHHHHHHHHHHT
T ss_pred             CceEEEECCEEEEecCCCCCC---CCCeEEeCCCCEECCCeeeeEeeecccCCChhhhhcCCHHHHHHHHHHHHHHHHhC
Confidence            579999999999999854322   4779999999999999999999998765411     111      12345677999


Q ss_pred             CceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccc--------------------------------cCCCc
Q 013050           72 GITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL--------------------------------VPENA  119 (450)
Q Consensus        72 GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~  119 (450)
                      |||++++++ ...      ..+....+.... ...++...+..                                .....
T Consensus       101 GvTtv~d~~-~~~------~~l~~~~~~~~~-~g~r~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (423)
T 3feq_A          101 GFTSVRDAG-GAD------WSLMQAVETGLV-SGPRIFPSGKALSQTGGHGDFRPRGDLLEPCSCCFRTGAIARVVDGVE  172 (423)
T ss_dssp             TEEEEEECS-SCC------HHHHHHHHTTSS-CSCEEECCCSEEECTTSTTCCCCC---CCCCCSSCCTTCSEEECCSHH
T ss_pred             CeEEEEeCC-Cch------HHHHHHHHcCCC-CCCeEEecCcccccCCCCccccccccccccccccccccccceecCCHH
Confidence            999999996 221      123332222111 11222111110                                11112


Q ss_pred             cchHHHHHHHHcCCcEEEEecccC-----CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcc
Q 013050          120 YNASALEALLNAGVLGLKSFMCPS-----GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR  194 (450)
Q Consensus       120 ~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~  194 (450)
                      +..+.++++.+.|+..+|.+....     ...+...++.+.++++++.|+++|+++.+|+....                
T Consensus       173 ~~~~~v~~~~~~g~~~ik~~~~g~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~----------------  236 (423)
T 3feq_A          173 GVRLAVREEIQKGATQIKIMASGGVASPTDPIANTQYSEDEIRAIVDEAEAANTYVMAHAYTGR----------------  236 (423)
T ss_dssp             HHHHHHHHHHHTTCSSEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCCEEEEEEEHH----------------
T ss_pred             HHHHHHHHHHHcCCCEEEEeccCCcCCCCCCcccccCCHHHHHHHHHHHHHCCCeEEEEeCChH----------------
Confidence            334667777888999999876421     11223468899999999999999999999995322                


Q ss_pred             ccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccccc
Q 013050          195 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI  274 (450)
Q Consensus       195 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~  274 (450)
                                      .+..+++...         ..-.|+.++.     .+.++.+++.|+.+............... 
T Consensus       237 ----------------~i~~~l~~g~---------~~i~H~~~~~-----~~~~~~l~~~gv~~~pt~~~~~~~~~~~~-  285 (423)
T 3feq_A          237 ----------------AIARAVRCGV---------RTIEHGNLVD-----EAAAKLMHEHGAFVVPTLVTYDALAKHGA-  285 (423)
T ss_dssp             ----------------HHHHHHHHTC---------CEEEEEEECC-----HHHHHHHHHHTCEEECCTHHHHHHHHHTG-
T ss_pred             ----------------HHHHHHHcCC---------CEEeccCcCC-----HHHHHHHHHCCCccccchHHHHHHHhccc-
Confidence                            2344444211         2223333332     23555566666544332112111111000 


Q ss_pred             CCCCCceEEcCCCCCh------hhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH
Q 013050          275 PDGDTRFKCAPPIRDA------ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG  348 (450)
Q Consensus       275 ~~~~~~~~~~~~~~~~------~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  348 (450)
                           ....+|.....      .....+..+++.|+.+++|||+...... .                    +...+...
T Consensus       286 -----~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~gTD~~~~~~~-~--------------------~~~e~~~~  339 (423)
T 3feq_A          286 -----EFGMPPESVAKVASVQQKGRESLEIYANAGVKMGFGSDLLGEMHA-F--------------------QSGEFRIR  339 (423)
T ss_dssp             -----GGTCCTTTSSTHHHHHHHHHHHHHHHHHHTCCBCCCCCCCGGGGG-G--------------------TTHHHHHH
T ss_pred             -----ccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCc-c--------------------hHHHHHHH
Confidence                 00111211111      1344567788899999999997421110 0                    01122233


Q ss_pred             HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEE
Q 013050          349 RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS  427 (450)
Q Consensus       349 ~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v  427 (450)
                      .+. +|++++++++|.|||+++|+ +++|+|++||.|||||+|.|+..++.    .....           ..+|+.||+
T Consensus       340 ~~~-ls~~eal~~aT~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~p~~~~~----~~~~~-----------~~~v~~v~~  403 (423)
T 3feq_A          340 AEV-LGNLEALRSATTVAAEIVNMQGQLGVIAVGAIADLVVLDGNPLEDIG----VVADE-----------GARVEYVLQ  403 (423)
T ss_dssp             HTT-SCHHHHHHTTTHHHHHHTTCBTTBSSCCTTSBCCEEEESSCTTTCGG----GTSSS-----------TTSEEEEEE
T ss_pred             Hhh-CCHHHHHHHHHHHHHHHhCCCCCceeECCCCcCCEEEECCChhhCHH----HHhcc-----------CCCceEEEE
Confidence            444 99999999999999999999 67899999999999999988533221    00000           037999999


Q ss_pred             CCeEEEecCcccC
Q 013050          428 RGNLVYKEGNHAP  440 (450)
Q Consensus       428 ~G~~v~~~g~~~~  440 (450)
                      +|++|+++++..+
T Consensus       404 ~G~~v~~~~~~~~  416 (423)
T 3feq_A          404 RGTLVKRQAAGRE  416 (423)
T ss_dssp             TTEEEEEC-----
T ss_pred             CCEEEeCCccccc
Confidence            9999999988764

>2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9

Probab=100.00  E-value=1.9e-33  Score=279.37  Aligned_cols=360  Identities=17%  Similarity=0.195  Sum_probs=202.7

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC---C--------CCcc------------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP---G--------RTEW------------   58 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~---~--------~~~~------------   58 (450)
                      ..++|+|+||||++|++..+ .   ++.++||++|++|+|||||+|+|+..+   +        +..|            
T Consensus        35 ~~~~v~I~~g~I~~vg~~~~-~---~~~~viD~~G~~v~PG~ID~H~H~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~  110 (492)
T 2paj_A           35 PGPDIRIVGDTIDAIGALAP-R---PGETIVDATDCVIYPAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALF  110 (492)
T ss_dssp             CCCCEEEETTEEEEESSCCC-C---TTCEEEECBTCEEEECEECCCCCGGGGGCCSCC-----------------CGGGC
T ss_pred             cccEEEEECCEEEEEcCCCC-C---CCCeEEECCCcEEeeCccccccChhhHhhcCccCCCCCCHHHHHHhcccchhhcC
Confidence            35789999999999997643 1   356899999999999999999998654   1        1111            


Q ss_pred             --cchHHH----HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC--------------
Q 013050           59 --EGFPSG----TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN--------------  118 (450)
Q Consensus        59 --~~~~~~----~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  118 (450)
                        +++...    .++++++|||++++++ ...+.......+....+..... .++...........              
T Consensus       111 ~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~-g~r~~~~~~~~~~~~~~~g~~~~~~~~~  188 (492)
T 2paj_A          111 DERRFRLAARIGLIELARSGCATVADHN-YVYYPGMPFDSSAILFEEAEKL-GLRFVLLRGGATQTRQLEADLPTALRPE  188 (492)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTEEEEEECC-CCCCTTCSSCHHHHHHHHHHHT-TCEEEEEECCCSCCCSCSTTSCGGGCCC
T ss_pred             CHHHHHHHHHHHHHHHHhcCcEEEEech-hhcccccccchHHHHHHHHHHc-CCEEEEEchhhcccccccccCCcccccc
Confidence              223333    3348999999999996 3333211122233333322222 23332221111100              


Q ss_pred             --ccchHHHHHHHHc--CC---cEEEEecccCCCCCC-CCCCHHHHHHHHHHHHhcCCcEEEecCChhh-hhhhhhhccC
Q 013050          119 --AYNASALEALLNA--GV---LGLKSFMCPSGINDF-PMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDD  189 (450)
Q Consensus       119 --~~~~~~~~~~~~~--g~---~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~  189 (450)
                        .+..+.+.++.+.  +.   ..++.+..+   .+. +..+.+.+.++++.|+++|+++.+|+.+... +...+...  
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~--  263 (492)
T 2paj_A          189 TLDAYVADIERLAARYHDASPRAMRRVVMAP---TTVLYSISPREMRETAAVARRLGLRMHSHLSETVGYQDSAYSMY--  263 (492)
T ss_dssp             CHHHHHHHHHHHHHHTCCCSTTCSEEEEECC---TTTTTSSCHHHHHHHHHHHHHTTCEEEEECC---------------
T ss_pred             CHHHHHHHHHHHHHHhccCCCCCceEEEEec---ccCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHc--
Confidence              1123444555542  11   123433333   222 3578899999999999999999999965321 11111100  


Q ss_pred             cCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcc
Q 013050          190 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF  269 (450)
Q Consensus       190 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~  269 (450)
                                  +..          .++.+...  +  ..+.+..+.|+...  +.+.++.+++.|+  .+.+||.....
T Consensus       264 ------------g~~----------~~~~~~~~--g--~~~~~~~i~H~~~~--~~~~i~~l~~~gv--~v~~~p~~~~~  313 (492)
T 2paj_A          264 ------------GKS----------PVAFCGEH--D--WLGSDVWYAHLVKV--DADEIALLAQTGT--GVAHCPQSNGR  313 (492)
T ss_dssp             ------------CCC----------HHHHHHHT--T--CCSTTEEEESCCSC--CHHHHHHHHHHTC--EEEECHHHHHC
T ss_pred             ------------CCC----------HHHHHHHC--C--CCCCCcEEEEEecC--CHHHHHHHHHcCC--EEEECchhhcc
Confidence                        000          11111211  0  01234445666542  1224666666664  44457653211


Q ss_pred             cccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhH-HHHHHHHH
Q 013050          270 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYG  348 (450)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~  348 (450)
                      .       +   ...+|++.         +++.|+.+++|||+.+.+....+               .... ....+...
T Consensus       314 l-------~---~~~~p~~~---------~~~~Gv~v~lgTD~~~~~~~~~~---------------~~~~~~~~~~~~~  359 (492)
T 2paj_A          314 L-------G---SGICPVRE---------MADAGVPVSIGVDGAASNEAADM---------------ISEVHMTWLAQRA  359 (492)
T ss_dssp             C---------------CCTT---------HHHHTCCEEECCCHHHHCSCCSH---------------HHHHHHHHHHHHH
T ss_pred             c-------C---CCCCCHHH---------HHHCCCcEEEeCCCCCCCCCCCH---------------HHHHHHHHHHhhh
Confidence            0       0   12234443         47789999999997432111000               0000 00001110


Q ss_pred             -----------------HhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCcc
Q 013050          349 -----------------RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSIS  411 (450)
Q Consensus       349 -----------------~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~  411 (450)
                                       ...++|++++++++|.|||+++|++++|+|++||+|||||+|.++.+..+         . ++
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~ls~~~al~~aT~~~A~~lgl~~~Gsl~~Gk~ADlvvld~~~~~~~~---------~-~~  429 (492)
T 2paj_A          360 RLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGARVMGLDEVGKVAVGYAADIAVYRLDDPRYFG---------L-HD  429 (492)
T ss_dssp             TC-------------------CCHHHHHHHHTHHHHHHHTCTTSSCCSTTSBCCEEEEECCSGGGTT---------C-SS
T ss_pred             hcccccccccccccccCCcCcCCHHHHHHHHHHHHHHHhCCCCccccCCCCccCEEEEeCCCcccCC---------c-cC
Confidence                             23469999999999999999999966899999999999999988643311         1 34


Q ss_pred             ccCCceE---eeEEEEEEECCeEEEecCcccCCCCCcc
Q 013050          412 AYLGRRL---SGKVLATISRGNLVYKEGNHAPAACGSP  446 (450)
Q Consensus       412 ~~~~~~~---~~~v~~v~v~G~~v~~~g~~~~~~~g~~  446 (450)
                      |+.++.+   ..+|..||++|++||++|+++..+.++.
T Consensus       430 p~~~i~~~~~~~~v~~v~v~G~~v~~~g~~~~~d~~~~  467 (492)
T 2paj_A          430 PAIGPVASGGRPSVMALFSAGKRVVVDDLIEGVDIKEL  467 (492)
T ss_dssp             GGGHHHHSCSCCEEEEEEETTEEEEETTBCTTCCHHHH
T ss_pred             HHHHHHhcCCCCCceEEEECCEEEEECCeeccCCHHHH
Confidence            5544332   1479999999999999999987665544

>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14

Probab=100.00  E-value=5.1e-34  Score=274.00  Aligned_cols=337  Identities=19%  Similarity=0.207  Sum_probs=206.9

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCC-CEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGE-AVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g-~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      +++|+|+||||++|++....    ++.++||++| ++|+|||||+|+|+..+....++   ...+.++++|||++++++ 
T Consensus        19 ~~~v~i~~g~I~~ig~~~~~----~~~~~iD~~g~~~v~PG~ID~H~H~~~~~~~~~~---~~~~~~~~~GvTtv~d~~-   90 (379)
T 2ics_A           19 PVEIAIKEKKIAAVAATISG----SAKETIHLEPGTYVSAGWIDDHVHCFEKMALYYD---YPDEIGVKKGVTTVIDAG-   90 (379)
T ss_dssp             EEEEEEETTEEEEEESCCCC----CEEEEEECCTTCEEEECEEEEEECCCTTSSSSCC---CHHHHTGGGTEEEEEEES-
T ss_pred             cceEEEECCEEEEecCCCCC----CCCcEEeCCCCEEEccCEEEeccccCccCccccC---chhhhHhhCceeEEEcCC-
Confidence            47899999999999875321    2457999999 99999999999999876544443   345678999999999975 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceE-EE---EeccccC-CC----ccchHHHHHHHH---cCCcEEEEecccCCCCCCC
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVD-VG---FWGGLVP-EN----AYNASALEALLN---AGVLGLKSFMCPSGINDFP  149 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~-~~----~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~  149 (450)
                      +..  ....+.+....+....  .+. +.   ..+.... ..    ....+.+.++++   .++.+++.+..+..   ..
T Consensus        91 ~~~--~~~~~~~~~~~~~~~~--~i~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~  163 (379)
T 2ics_A           91 TTG--AENIHEFYDLAQQAKT--NVFGLVNISKWGIVAQDELADLSKVQASLVKKAIQELPDFVVGIKARMSRTV---IG  163 (379)
T ss_dssp             SSC--TTTHHHHHHHHHTSSS--EEEEEEESSTTTTSSSCTTSSGGGCCHHHHHHHHHHCTTTEEEEEEEESHHH---HT
T ss_pred             CCC--ccCHHHHHHHHHhhcc--cEEEEccccccCCCCHHHHHHHHHHHHHHHHHHHHhhhCcceEEEEeccccc---cc
Confidence            322  2334444333332211  111 11   1121111 11    112355666655   47778877654311   12


Q ss_pred             CCCHHHHHHHHHHHHh-cCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhh-ccCCC
Q 013050          150 MTNASHIKEGLSVLAR-YKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDT-RTDGP  227 (450)
Q Consensus       150 ~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~-~~~~~  227 (450)
                      ..+.+.+.+.++.|++ +|+++.+|+......                               .+.+.+..+.. .....
T Consensus       164 ~~~~~~~~~~~~~a~~~~g~~v~~H~~~~~~~-------------------------------~~~~~~~~~~g~~~~H~  212 (379)
T 2ics_A          164 DNGITPLELAKQIQQENQEIPLMVHIGSAPPH-------------------------------LDEILALMEKGDVLTHC  212 (379)
T ss_dssp             TCTTHHHHHHHHHHHTTTTCCEEEEECSSSSC-------------------------------HHHHHHHCCTTCEEEST
T ss_pred             cchHHHHHHHHHHHHHhcCCeEEEeCCCCcch-------------------------------HHHHHHHhhcCCeeeec
Confidence            3567888999999999 999999999542110                               11222222110 00000


Q ss_pred             CCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcC-Cee
Q 013050          228 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG-HID  306 (450)
Q Consensus       228 ~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~  306 (450)
                      +.+.+.|+.|.++. ...+.++.+++.|+  ++.++|....                      .....++++++.| +.+
T Consensus       213 ~~~~~~~~~~~s~~-~~~~~~~~~~~~g~--~~~~~p~~~~----------------------~~~~~~~~~~~~G~~~~  267 (379)
T 2ics_A          213 FNGKENGILDQATD-KIKDFAWQAYNKGV--VFDIGHGTDS----------------------FNFHVAETALREGMKAA  267 (379)
T ss_dssp             TCCSTTSSEETTTT-EECHHHHHHHHTTC--EEECCCTTTS----------------------CCHHHHHHHHHTTCCCS
T ss_pred             cCCCccchhhccCH-HHHHHHHHHHHcCC--EEEecCCCCC----------------------cCHHHHHHHHHcCCCcc
Confidence            01122233343232 34467777777774  4444553210                      1234467778888 888


Q ss_pred             EEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccE
Q 013050          307 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADL  386 (450)
Q Consensus       307 ~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADl  386 (450)
                      +++||+.+.+.    + .++           ...+...+..+.+.++|++++++++|.|||++||++++|+|+|||+|||
T Consensus       268 ~l~TD~~~~~~----~-~~~-----------~~~~~~~l~~~~~~~ls~~~~~~~~T~n~A~~lgl~~~G~l~~G~~ADl  331 (379)
T 2ics_A          268 SISTDIYIRNR----E-NGP-----------VYDLATTMEKLRVVGYDWPEIIEKVTKAPAENFHLTQKGTLEIGKDADL  331 (379)
T ss_dssp             BCCCCBCHHHH----H-SSS-----------CCCHHHHHHHHHHHTCCHHHHHHTTTHHHHHHTTCTTSSSCCTTSBCCE
T ss_pred             eEeccCcccCC----C-CCc-----------HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCcCCCCCCccCE
Confidence            99999642210    0 000           1123344444445689999999999999999999944999999999999


Q ss_pred             EEEeCCCceeeCCCCCcccCCCCccccCCceEee----EEEEEEECCeEEEecCcc
Q 013050          387 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG----KVLATISRGNLVYKEGNH  438 (450)
Q Consensus       387 vv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~v~v~G~~v~~~g~~  438 (450)
                      ||+|.+..+..            .+++.|..+.+    +|..|||+|++||++|.+
T Consensus       332 vv~d~~~~~~~------------~~~~~g~~~~~~~~~~v~~t~v~G~~v~~~~~~  375 (379)
T 2ics_A          332 TIFTIQAEEKT------------LTDSNGLTRVAKEQIRPIKTIIGGQIYDNEGHH  375 (379)
T ss_dssp             EEEEEEEEEEE------------EECTTSCEEEEEEEEEEEEEEETTEEEEC----
T ss_pred             EEEecccccce------------eecCCCCEEEeeeeeeeEEEEECCEEEecCCcc
Confidence            99996543221            45566777777    899999999999999965

>2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri}

Probab=100.00  E-value=1.1e-31  Score=258.40  Aligned_cols=343  Identities=15%  Similarity=0.154  Sum_probs=212.1

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCC-CcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKT-GQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMP   80 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~-~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~   80 (450)
                      .+++|+|+||+|++|++......  .+ .++||++|++|+|||||+|+|+..+............+.++++||||+++++
T Consensus        23 ~~~~v~I~~g~I~~Ig~~~~~~~--~~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~  100 (386)
T 2vun_A           23 QADTIVVEDGLIAAIGGEELMKD--AGDATIIDAAGSTVTPGLLDTHVHVSGGDYAPRQKTMDFISSALHGGVTTMISAG  100 (386)
T ss_dssp             CCSEEEEETTEEEEEESGGGGTT--CTTCEEEECTTCEEEECEEEEEECCCSTTEEGGGTEESHHHHHHTTTEEEEEECC
T ss_pred             ccceEEEECCEEEEecCccccCC--CCCceEEcCCCCEEccceeeccccccCCCcChhHHHHHHHHHHHhCCceEEEecc
Confidence            35799999999999987322111  24 5799999999999999999999753211000112368899999999999985


Q ss_pred             CC----CCCCCCcHHHHH--HHHHHHh---cC-CceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCC
Q 013050           81 LN----SDPSTISTETLK--LKVDAAE---KR-IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPM  150 (450)
Q Consensus        81 ~~----~~~~~~~~~~~~--~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  150 (450)
                       +    ..+  .....+.  .......   .. ....+. .+..........+.++++.+.|+..++.+...      ..
T Consensus       101 -~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~------~~  170 (386)
T 2vun_A          101 -SPHFPGRP--KDAAGTKALAITLSKSYYNARPAGVKVH-GGAVILEKGLTEEDFIEMKKEGVWIVGEVGLG------TI  170 (386)
T ss_dssp             -CTTSTTCC--CSHHHHHHHHHHHHHHHHHCCGGGCEEE-CCEECCCTTCCHHHHHHHHHTTCCEEEEETSS------SC
T ss_pred             -ccccCCCh--hhHHHHHHHHHHhhcccccccccceeec-cCcccccCCcCHHHHHHHHHhCCCeEEEeecC------CC
Confidence             2    222  2222232  1111111   10 001111 11100111122467888888899888886421      13


Q ss_pred             CCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCC
Q 013050          151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG  230 (450)
Q Consensus       151 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~  230 (450)
                      ++++.+.++++.|+++|+++.+|+++.....         ...                +.+..+.    +.       +
T Consensus       171 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~---------~~~----------------~~i~~~~----~~-------G  214 (386)
T 2vun_A          171 KNPEDAAPMVEWAHKHGFKVQMHTGGTSIPG---------SST----------------VTADDVI----KT-------K  214 (386)
T ss_dssp             CSHHHHHHHHHHHHHTTCEEEEECSCCSCST---------TCS----------------CCHHHHH----HH-------C
T ss_pred             CCHHHHHHHHHHHHHCCCeEEEecCCccccc---------cCH----------------HHHHHHH----Hc-------C
Confidence            5789999999999999999999996432100         000                0122222    22       4


Q ss_pred             ceEEEEecCChh--HHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCC--ee
Q 013050          231 AHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--ID  306 (450)
Q Consensus       231 ~~~~~~h~~~~~--~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~  306 (450)
                      .+ .+.|+...+  .+.+.++.+++.|+.+..  ++.    .       +       .  .......++++++.|+  .+
T Consensus       215 ~~-~i~H~~~~~~~~~~~~~~~~~~~g~~vl~--~~~----~-------g-------~--~~~~~~~~~~~~~~g~~d~v  271 (386)
T 2vun_A          215 PD-VVSHINGGPTAISVQEVDRIMDETDFAME--IVQ----C-------G-------N--PKIADYVARRAAEKGQLGRV  271 (386)
T ss_dssp             CS-EEETTTCSSSCCCHHHHHHHHHHCCCEEE--EES----S-------S-------C--HHHHHHHHHHHHHHTCGGGE
T ss_pred             CC-EEEEccCCCCCCCHHHHHHHHHcCCeEEE--ecc----C-------C-------c--ccccHHHHHHHHHcCCCcee
Confidence            44 368876510  234566677667765511  110    0       0       0  2344567788999999  89


Q ss_pred             EEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccE
Q 013050          307 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADL  386 (450)
Q Consensus       307 ~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADl  386 (450)
                      +++||+ |...          ...+.|      .+...+..+.+.++|++++++++|.|||+++|+ +.|+|++||.|||
T Consensus       272 ~lgTD~-p~~~----------~~~~~g------~~~~~~~~~~~~~ls~~~~~~~~T~n~A~~lgl-~~G~i~~G~~ADl  333 (386)
T 2vun_A          272 IFGNDA-PSGT----------GLIPLG------ILRNMCQIASMSDIDPEVAVCMATGNSTAVYGL-NTGVIAPGKEADL  333 (386)
T ss_dssp             EEECCB-SBTT----------BBCTTH------HHHHHHHHHHHSCCCHHHHHHHHTHHHHHHHTC-SCSSCSTTSBCCE
T ss_pred             EEecCC-CCCC----------CCCcch------hHHHHHHHHhhcCCCHHHHHHHHhHHHHHHcCC-CceeeCCCCeeCE
Confidence            999997 3110          000111      122233344567999999999999999999999 7999999999999


Q ss_pred             EEEeCCCceeeCCCCCcccCCCCccccCCceE--eeEEEEEEECCeEEEecCcccCCCCCcc
Q 013050          387 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRL--SGKVLATISRGNLVYKEGNHAPAACGSP  446 (450)
Q Consensus       387 vv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~v~G~~v~~~g~~~~~~~g~~  446 (450)
                      ||+|.++. +. .          ..++.....  ..+|..||++|++|+++|+..+ ..||.
T Consensus       334 vv~d~~~~-~~-~----------~~~~~~~~~~~~~~v~~v~v~G~~v~~~~~~~~-~~~~~  382 (386)
T 2vun_A          334 IIMDTPLG-SV-A----------EDAMGAIAAGDIPGISVVLIDGEAVVTKSRNTP-PAKRA  382 (386)
T ss_dssp             EEEECBTT-CS-C----------SSHHHHHHHTCCCEEEEEEETTEEEESSCSSSC-CBSSC
T ss_pred             EEECCCcc-cc-c----------chhHHHhhccCCCceeEEEECCEEEeecCcCCC-CCCcc
Confidence            99998752 11 1          122221111  2489999999999999999886 33443

>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP}

Probab=100.00  E-value=2e-32  Score=265.14  Aligned_cols=336  Identities=15%  Similarity=0.108  Sum_probs=202.6

Q ss_pred             eeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCC----------Cc-c--------------
Q 013050            4 RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR----------TE-W--------------   58 (450)
Q Consensus         4 ~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~----------~~-~--------------   58 (450)
                      ++|+|+||||++|++..+.    +..++||++|++|+|||||+|+|+.....          .. +              
T Consensus        21 ~~v~I~~g~I~~vg~~~~~----~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~   96 (403)
T 2qt3_A           21 YDIGIVGDRIIKIEAKIEG----TVKDEIDAKGNLVSPGFVDAHTHMDKSFTSTGERLPKFWSRPYTRDAAIEDGLKYYK   96 (403)
T ss_dssp             EEEEEETTEEEEEESSCCS----CEEEEEECTTCBEEECEEEEEECGGGTTTTCSSSSCTTCSSCCCHHHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEeecCCCC----CccceEcCCCCEecccceeeeeccchhhcccccccccccCCCcccCcCHHHHHHHhh
Confidence            6899999999999986432    23579999999999999999999965432          00 0              


Q ss_pred             ----cchH----HHHHHHHhCCceEEEeCCCCCCCCC--CcHHHHHHHHHHHhcCCceEEEEeccc-cCCCccchHHHHH
Q 013050           59 ----EGFP----SGTKAAAAGGITTLIDMPLNSDPST--ISTETLKLKVDAAEKRIYVDVGFWGGL-VPENAYNASALEA  127 (450)
Q Consensus        59 ----~~~~----~~~~~~~~~GvT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  127 (450)
                          +.+.    ...++++++|||+++++. ...+..  .....+....+.........+..+... .....+..+.+++
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (403)
T 2qt3_A           97 NATHEEIKRHVIEHAHMQVLHGTLYTRTHV-DVDSVAKTKAVEAVLEAKEELKDLIDIQVVAFAQSGFFVDLESESLIRK  175 (403)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHTTEEEEEEEE-ECSTTTTTHHHHHHHHHHHHHTTTCEEEEEEECTTCTTTSTTHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHcCCcEEEEEE-cccCccccchHHHHHHHHHHhhcceeEEEEEcCCcccccCcchHHHHHH
Confidence                0111    135678899999998764 222211  112222222232222222222211110 0111223456666


Q ss_pred             HHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHH
Q 013050          128 LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW  207 (450)
Q Consensus       128 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  207 (450)
                      +.+.|...++.+ .+   ......+.+.++++++.|+++|+++.+|+.....                           .
T Consensus       176 ~~~~g~~~~~~~-~p---~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~---------------------------~  224 (403)
T 2qt3_A          176 SLDMGCDLVGGV-DP---ATRENNVEGSLDLCFKLAKEYDVDIDYHIHDIGT---------------------------V  224 (403)
T ss_dssp             HHHTTCSEEECB-CT---TTTTSCHHHHHHHHHHHHHHTTCEEEEEECCCHH---------------------------H
T ss_pred             HHhcCCCeEEEe-cC---CCCCCChHHHHHHHHHHHHHcCCCeEEEeCCccc---------------------------c
Confidence            677776444322 11   1112445689999999999999999999954321                           0


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHH------HHHHHHHHhCCCcEEEecCcchhcccccccCCCCCce
Q 013050          208 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS------LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF  281 (450)
Q Consensus       208 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~------~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~  281 (450)
                      ....++.+++.+.+.   +.  +.+..+.|+... ..      .+.++.+++.|+.+..  +|..               
T Consensus       225 ~~~~~~~~~~~~~~~---g~--~~~~~i~H~~~~-~~~~~~~~~~~~~~l~~~g~~v~~--~p~~---------------  281 (403)
T 2qt3_A          225 GVYSINRLAQKTIEN---GY--KGRVTTSHAWCF-ADAPSEWLDEAIPLYKDSGMKFVT--CFSS---------------  281 (403)
T ss_dssp             HHHHHHHHHHHHHHT---TC--TTSEEEEECTHH-HHSCHHHHHHHHHHHHHHTCEEEE--ETTT---------------
T ss_pred             hhHHHHHHHHHHHHc---CC--CCCeEEEehhhh-ccCChhhHHHHHHHHHHcCCEEEE--CCCC---------------
Confidence            112344445555443   11  336788998753 21      3677777777765555  4421               


Q ss_pred             EEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcC----CCHHH
Q 013050          282 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG----VTLEQ  357 (450)
Q Consensus       282 ~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g----ls~~~  357 (450)
                            .  .....+..+++.|+.+++|||+... +         +  .+.+....   +..........+    +|+++
T Consensus       282 ------~--~~~~~~~~~~~~Gv~v~lgtD~~~~-~---------~--~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~  338 (403)
T 2qt3_A          282 ------T--PPTMPVIKLLEAGINLGCASDNIRD-F---------W--VPFGNGDM---VQGALIETQRLELKTNRDLGL  338 (403)
T ss_dssp             ------C--CTTCCHHHHHHTTCEEEEECCSCSS-S---------S--CSCCCCCH---HHHHHHHHHHTTCCSHHHHHH
T ss_pred             ------C--CCCCCHHHHHHcCCcEEEeCCCCCC-C---------C--CCCCCCCH---HHHHHHHHHHhCcCCccCHHH
Confidence                  0  0112245677889999999997421 0         0  01111111   111111111122    68999


Q ss_pred             HHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCc
Q 013050          358 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN  437 (450)
Q Consensus       358 al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~  437 (450)
                      +++++|.|||+++|+++.|+|++||.|||||+|.+++..                  ......+|..||++|++||++|+
T Consensus       339 al~~~T~~~A~~lg~~~~g~i~~G~~ADlvv~d~~~~~~------------------~~~~~~~v~~v~v~G~~v~~~g~  400 (403)
T 2qt3_A          339 IWKMITSEGARVLGIEKNYGIEVGKKADLVVLNSLSPQW------------------AIIDQAKRLCVIKNGRIIVKDEV  400 (403)
T ss_dssp             HHHHTTHHHHHHHTCGGGCSSSTTSBCCEEEESSSSHHH------------------HHHHCCCEEEEEETTEEEEESSS
T ss_pred             HHHHHHHHHHHhcCCCcccCCCCCCcCCEEEEcCCChHH------------------HhhcCCCccEEEECCEEEecCCc
Confidence            999999999999999445999999999999999775221                  01112479999999999999999


Q ss_pred             cc
Q 013050          438 HA  439 (450)
Q Consensus       438 ~~  439 (450)
                      ++
T Consensus       401 ~~  402 (403)
T 2qt3_A          401 IV  402 (403)
T ss_dssp             BC
T ss_pred             cc
Confidence            86

>3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified}

Probab=100.00  E-value=3.7e-33  Score=276.17  Aligned_cols=366  Identities=13%  Similarity=0.091  Sum_probs=200.8

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc------c-----------------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE------W-----------------   58 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~------~-----------------   58 (450)
                      .+++|+|+||||++||+..+.+.  ...++||++|++|+|||||+|+|+.......      .                 
T Consensus        50 ~~gdV~I~dgrI~aVG~~~~~~~--~~~~vIDa~G~~v~PG~ID~H~H~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~  127 (479)
T 3hpa_A           50 RDAGLYIEDNRIVAVGPSAELPE--TADEVLDLRGHLVIPGLVNTHHHMYQSLTRAVPAAQNAELFGWLTNLYKIWAHLT  127 (479)
T ss_dssp             EEEEEEEETTEEEEEEEGGGSCS--CCSEEEECTTEEEEECEEECCCCGGGGGSCSCTTTTTCCHHHHHHHHHHHHTTCC
T ss_pred             cCcEEEEECCEEEEEeCCccCCC--CCCeEEECCCCEEeeCceeHhhCcchhcccccccCCCcchHHHHhhhhhhhhhcC
Confidence            46899999999999998766543  4678999999999999999999984321100      0                 


Q ss_pred             -c----chHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc-CC----------Cccch
Q 013050           59 -E----GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-PE----------NAYNA  122 (450)
Q Consensus        59 -~----~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~  122 (450)
                       +    .......+++..|+|++.++. .................................. ..          .....
T Consensus       128 ~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (479)
T 3hpa_A          128 PEMIEVSTLTAMAELLQSGCTTSSDHL-YIYPNGSRLDDSIGAAQRIGMRFHASRGAMSVGQRDGGLPPDSVVEREPDIL  206 (479)
T ss_dssp             HHHHHHHHHHHHHHHHTTTEEEEECCB-CCCCTTCCHHHHHHHHHHHTCEEEEEEEECC----------------CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCceeccee-eeccchhhHHHHHHHHHHhcchhhhhhheeeccccccCCCchhhhhhhhhHH
Confidence             0    012234577899999999985 3333233333333332222211111111110000 00          00111


Q ss_pred             HHHHHHHH----cCCcEEE-EecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhh-hhhhhhhccCcCCcccc
Q 013050          123 SALEALLN----AGVLGLK-SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSY  196 (450)
Q Consensus       123 ~~~~~~~~----~g~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~  196 (450)
                      +....+..    .+..... .....   ......+.+.+.+....|++.+.++..|...... +.......         
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~g~~~~~h~~~~~~~~~~~~~~~---------  274 (479)
T 3hpa_A          207 RDTQRLIETYHDEGRYAMLRVVVAP---CSPFSVSRDLMRDAAVLAREYGVSLHTHLAENVNDIAYSREKF---------  274 (479)
T ss_dssp             HHHHHHHHHHCCCSTTCSEEEEEEE---SCTTTSCHHHHHHHHHHHHHHTCEEEEEESCSHHHHHC--------------
T ss_pred             HHHHHHHHHhhhhcccccceeEecc---cccccCCHHHHHHHHHHHHhcCCeEEeecccchHHHHHHHHHc---------
Confidence            11122211    1111111 11111   1123567888999999999999999999843221 11000000         


Q ss_pred             ccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCC
Q 013050          197 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD  276 (450)
Q Consensus       197 ~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~  276 (450)
                           +      ...+.......        ..+.+..+.|+... .. ...+..++.+....  .++.........   
T Consensus       275 -----g------~~~~~~~~~~~--------~~~~~~~~~h~~~~-~~-~~~~~~~~~~~~~~--~~p~~~~~~~~~---  328 (479)
T 3hpa_A          275 -----G------MTPAEYAEDLG--------WVGHDVWHAHCVQL-DD-AGIGLFARTGTGVA--HCPCSNMRLASG---  328 (479)
T ss_dssp             -------------CHHHHHHHTT--------CCSTTEEEEECTTC-CH-HHHHHHHHHTCEEE--ECHHHHHHTTCC---
T ss_pred             -----C------CchHHHHhhhc--------cccccceeeeeEec-ch-hHHHHHHhcCCcee--eccccccccccC---
Confidence                 0      00111111111        11445666776643 11 12223333333233  244322111000   


Q ss_pred             CCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH--HHhcCCC
Q 013050          277 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY--GRKYGVT  354 (450)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~gls  354 (450)
                             .+         ........++.+.+++|..+.+....              .............  ....++|
T Consensus       329 -------~~---------~~~~~~~~~~~v~~gtD~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ls  378 (479)
T 3hpa_A          329 -------IA---------PVKKMRLAGVPVGLGVDGSASNDGAQ--------------MVAEVRQALLLQRVGFGPDAMT  378 (479)
T ss_dssp             -------CC---------CHHHHHHHTCCEEECCCCTTSSCCCC--------------HHHHHHHHHHHHHHHHCTTSCC
T ss_pred             -------cc---------chhHHHhcCCcEEeeccccccCCCcc--------------HHHHHHHHHHHHhhhccccCCC
Confidence                   00         12344567899999999765432111              1111111112221  2345799


Q ss_pred             HHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE--eeEEEEEEECCeEE
Q 013050          355 LEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL--SGKVLATISRGNLV  432 (450)
Q Consensus       355 ~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~v~G~~v  432 (450)
                      ++++++++|.|||++||++++|+|+|||+|||||||.+.+++....         ++|+.+.++  .++|.+||||||+|
T Consensus       379 ~~eal~~~T~~~A~~lgl~~~G~I~~G~~ADlvv~D~~~~~~~~~~---------~dp~~~lv~~~~~~v~~tiV~G~~V  449 (479)
T 3hpa_A          379 AREALEIATLGGAKVLNRDDIGALKPGMAADFAAFDLRQPLFAGAL---------HDPVAALVFCAPSQTAYTVVNGKVV  449 (479)
T ss_dssp             HHHHHHHTTHHHHHHHTCSSSSSCSTTSBCCEEEEETTSGGGTTCT---------TSHHHHHHHSSCCCCSEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCCccCCCCCcCCEEEEcCCCccccCCc---------cCHHHHhhccCCCCceEEEECCEEE
Confidence            9999999999999999997699999999999999998875544322         334332222  25789999999999


Q ss_pred             EecCcccCCCCCccc
Q 013050          433 YKEGNHAPAACGSPI  447 (450)
Q Consensus       433 ~~~g~~~~~~~g~~~  447 (450)
                      |+||++++.+.++.+
T Consensus       450 ~~dG~~~~~D~~~~~  464 (479)
T 3hpa_A          450 VREGRLATLDLPPVI  464 (479)
T ss_dssp             EETTEECSSCHHHHH
T ss_pred             EECCcCCCCCHHHHH
Confidence            999999987766554

>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens}

Probab=100.00  E-value=2.9e-32  Score=264.96  Aligned_cols=337  Identities=17%  Similarity=0.136  Sum_probs=203.4

Q ss_pred             cceeEEEe-CCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCC
Q 013050            2 CKRAVEIK-EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMP   80 (450)
Q Consensus         2 ~~~~V~I~-~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~   80 (450)
                      .+++|+|+ ||||++|++..+.+   .+.++||++|++|+|||||+|+|+..+....++.   ..+.++++|||++++++
T Consensus        34 ~~~~v~I~~~g~I~~Ig~~~~~~---~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~---~~~~~l~~GvTtv~d~~  107 (417)
T 2ogj_A           34 SSTDILIGGDGKIAAVGSALQAP---ADTQRIDAKGAFISPGWVDLHVHIWHGGTDISIR---PSECGAERGVTTLVDAG  107 (417)
T ss_dssp             SCEEEEECTTSBEEEEETTCCCS---SCEEECCC--CEEEECEEEEEECCCBTTBSSCCC---GGGTSGGGTEEEEEEES
T ss_pred             ccceEEEecCCEEEEeccCCCCC---CCCeEEECCCCEEccCeeeccccccccccccCCC---HHHHHHhCCcCeEEeCC
Confidence            46899999 99999999754321   2457999999999999999999998765443322   23457899999999986


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhc-CCceEEEEec---cccC-----CC----ccchHHHHHHHHc---CCcEEEEecccCC
Q 013050           81 LNSDPSTISTETLKLKVDAAEK-RIYVDVGFWG---GLVP-----EN----AYNASALEALLNA---GVLGLKSFMCPSG  144 (450)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~-----~~----~~~~~~~~~~~~~---g~~~~~~~~~~~~  144 (450)
                       +..+  .....+...  ..+. ...+......   +...     ..    ....+.+.++.+.   ++.+++.++....
T Consensus       108 -~~~~--~~~~~~~~~--~~~~~~~~i~~~~~~~~~G~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~  182 (417)
T 2ogj_A          108 -SAGE--ANFHGFREY--IIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLKVRASHVI  182 (417)
T ss_dssp             -SCCS--TTHHHHHHH--TTTTCSSEEEEEEESSTTTTTTTTTSCSCSSGGGCCHHHHHHHHHTCTTTEEEEEEEESHHH
T ss_pred             -cCCC--cCHHHHHHH--HhhccccCeEEEeccccCcCCCCCCcccccchhhcCHHHHHHHHHhCCCceEEEEEEecCCc
Confidence             3322  233222221  1111 1111111110   1111     01    0123456666653   4456777654211


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhcc
Q 013050          145 INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT  224 (450)
Q Consensus       145 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~  224 (450)
                         ....+.+.+.++++.|++.|+++.+|+.....                               .++.+......   
T Consensus       183 ---~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-------------------------------~~~~~~~~l~~---  225 (417)
T 2ogj_A          183 ---TGSWGVTPVKLGKKIAKILKVPMMVHVGEPPA-------------------------------LYDEVLEILGP---  225 (417)
T ss_dssp             ---HTTCTTHHHHHHHHHHHHHTCCEEEEECSSSS-------------------------------CHHHHHHHCCT---
T ss_pred             ---cccccHHHHHHHHHHHHHcCCcEEEEcCCCcc-------------------------------cHHHHHHHhcC---
Confidence               12356788889999999999999999954211                               01222222221   


Q ss_pred             CCCCCCceEEEEecCCh---------hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHH
Q 013050          225 DGPAEGAHLHIVHLSDA---------SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEK  295 (450)
Q Consensus       225 ~~~~~~~~~~~~h~~~~---------~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (450)
                           +  ..+.|+...         ....+.++++++.|+.+  .+++...                      ......
T Consensus       226 -----g--~~~~H~~~~~~~~~~~~~~~~~~~i~~~~~~g~~v--~~~~~~~----------------------~~~~~~  274 (417)
T 2ogj_A          226 -----G--DVVTHCFNGKSGSSIMEDEDLFNLAERCAGEGIRL--DIGHGGA----------------------SFSFKV  274 (417)
T ss_dssp             -----T--CEEETTTCCCTTTCTTSCHHHHHHHHHC--CCCEE--ECCBCSS----------------------SCCHHH
T ss_pred             -----C--CEEEeccCCCccchhccCHHHHHHHHHHHhcCcEE--EecCCCc----------------------cccchH
Confidence                 2  344565431         13446666666666433  2233210                      012456


Q ss_pred             HHHHHhcC-CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCC
Q 013050          296 LWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVS  374 (450)
Q Consensus       296 l~~~~~~g-~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~  374 (450)
                      ++.+++.| +.++++||+. .+..     .++           ...+...+..+.+.++|++++++++|.|||++||+++
T Consensus       275 ~~~~~~~G~~~~~lgtD~~-~~~~-----~g~-----------~~~l~~~~~~~~~~~l~~~~al~~~T~n~A~~lgl~~  337 (417)
T 2ogj_A          275 AEAAIARGLLPFSISTDLH-GHSM-----NFP-----------VWDLATTMSKLLSVDMPFENVVEAVTRNPASVIRLDM  337 (417)
T ss_dssp             HHHHHHTTCCCSBCCBCBS-TTTT-----TTT-----------CCCHHHHHHHHHHTTCCHHHHHHTTTHHHHHHTTCCC
T ss_pred             HHHHHHcCCCceEEEcCCC-CCcc-----CCC-----------hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCC
Confidence            78888999 9999999975 4210     011           0124444444555789999999999999999999944


Q ss_pred             CCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEee----EEEEEEECCeEEEecCcccCCCCCcccc
Q 013050          375 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG----KVLATISRGNLVYKEGNHAPAACGSPIL  448 (450)
Q Consensus       375 ~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~v~v~G~~v~~~g~~~~~~~g~~~~  448 (450)
                      +|+|+|||.|||||+|.+.++..            ..++.+....+    +|..||++|++||++|+++...  ++++
T Consensus       338 ~G~l~~G~~ADlvv~d~~~~~~~------------~~~~~g~~~~~~~~~~v~~t~v~G~~v~~~~~~~~~~--~~~~  401 (417)
T 2ogj_A          338 ENRLDVGQRADFTVFDLVDADLE------------ATDSNGDVSRLKRLFEPRYAVIGAEAIAASRYIPRAR--KLVR  401 (417)
T ss_dssp             SSTTSTTSBCEEEEEEEEEEEEE------------EECTTSCEEEEEEEEEEEEEEETTEEEECCCCCCCC-------
T ss_pred             CCccCCCCcccEEEEecccCCce------------ecCCCCceEecccccceEEEEECCEEEEeCCccchHH--HHHH
Confidence            99999999999999997653321            23344444444    8999999999999999988654  5544

>2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17

Probab=100.00  E-value=9.5e-33  Score=271.72  Aligned_cols=343  Identities=17%  Similarity=0.140  Sum_probs=200.9

Q ss_pred             ceeEEE-eCCEEEEecc--CCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC-c---------------cc----
Q 013050            3 KRAVEI-KEGNIISIVS--EEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-E---------------WE----   59 (450)
Q Consensus         3 ~~~V~I-~~g~I~~Ig~--~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~-~---------------~~----   59 (450)
                      +++|+| +||||++|++  ....+   .+.++||++|++|+|||||+|+|+..+... .               +.    
T Consensus        33 ~~~v~I~~~g~I~~Vg~~~~~~~~---~~~~viD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (458)
T 2p9b_A           33 NMTIVVGADGRIEQVAPSIETSIP---AEYHYLDGTGKIVMPGLINAHTHLFSQGKPLNPKLATPKGQRMVATFAHSPLG  109 (458)
T ss_dssp             EEEEEECTTSBEEEEEEGGGCCCC---TTCEEEECTTCEEEECEEEEEECSCC---------------------------
T ss_pred             CcEEEEecCCEEEEEeccccCCCC---CCCeEEECCCCEEccceeeeeeccccccccccccccchhhhhhhhhhhhhccc
Confidence            478999 9999999997  32221   356899999999999999999999765422 0               11    


Q ss_pred             ------chHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecc-------ccC-------CCc
Q 013050           60 ------GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG-------LVP-------ENA  119 (450)
Q Consensus        60 ------~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-------~~~  119 (450)
                            .+....+.++++|||++++++ +..+   ....+....+.. .....++...+.       ...       .+.
T Consensus       110 ~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~---~~~~~~~~~~~g-~~~g~r~~~~g~~~~~~g~~~~~~~~~~~~~~  184 (458)
T 2p9b_A          110 KPYMAATVKHNATTLLESGVTTIRTLG-DVGY---EVVTLRDQIDAG-QILGPRILASGPLMAIPEGHGAPLIALTSGTP  184 (458)
T ss_dssp             --CHHHHHHHHHHHHHHTTEEEEEESC-CSSS---HHHHHHHHHHTT-SSCCCEEECCCSCEECCCSSCCCCEECCSCCH
T ss_pred             ccHHHHHHHHHHHHHHHcCCcEEEeCC-CCcc---ccHHHHHHHHcC-CCCCCeEEecccccccCCCCCccccCccCCCH
Confidence                  233467889999999999986 3221   111222221111 110123322111       100       111


Q ss_pred             -cchHHHHHHHHcCCcEEEEecccCC-------CCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcC
Q 013050          120 -YNASALEALLNAGVLGLKSFMCPSG-------INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL  191 (450)
Q Consensus       120 -~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~  191 (450)
                       +..+.++++.+.|...+|.+....-       ..+.+..+.+.+.++++.|+++|++|.+|+.+...            
T Consensus       185 ~~~~~~~~~~~~~g~~~ik~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~------------  252 (458)
T 2p9b_A          185 EEARTAVAQNLKAGVNAIKIAATGGVTDAQEIGEAGSPQMSVEQMRAICDEAHQYGVIVGAHAQSPEG------------  252 (458)
T ss_dssp             HHHHHHHHHHHHTTCSCEEEECSCCTTSCCCC------CCCHHHHHHHHHHHHHTTCCEEEEECSHHH------------
T ss_pred             HHHHHHHHHHHHcCCCEEEEEecCCcCCCCccCCCCCCcCCHHHHHHHHHHHHHCCCeEEEEeCCHHH------------
Confidence             1123455566678888888764210       11234678899999999999999999999964321            


Q ss_pred             CccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHH------hCCCcEEEecCcc
Q 013050          192 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAK------TNGDSITVETCPH  265 (450)
Q Consensus       192 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~------~~g~~v~~~~~~~  265 (450)
                                          +..+++.           +.. .+.|+...  ..+.++.++      +.|+.+....++.
T Consensus       253 --------------------i~~~~~~-----------G~~-~i~H~~~~--~~~~~~~~~~~~~~~~~g~~v~p~~~~~  298 (458)
T 2p9b_A          253 --------------------VRRSLLA-----------GVD-TIEHGSVL--DDELIGMFRHNPNALRGYSALIPTLSAG  298 (458)
T ss_dssp             --------------------HHHHHHH-----------TCS-EEEECCCC--CHHHHHHHHCCTTSTTSCCEEECCHHHH
T ss_pred             --------------------HHHHHHc-----------CCC-EEEECCCC--CHHHHHHHhcccccccCCeEEEeecchh
Confidence                                2333221           322 34666542  234667777      7776443222111


Q ss_pred             h--hcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCC-CChhhhcccCCCccccCCCCcchhhHHH
Q 013050          266 Y--LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLP  342 (450)
Q Consensus       266 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~  342 (450)
                      .  ........ .........++.+.......++.+++.|+.+++|||+.+ .+              +.+.      +.
T Consensus       299 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~gtD~~~~~~--------------~~~~------~~  357 (458)
T 2p9b_A          299 LPLTLLGQDVT-GITDIQLENSKNVVGGMVSGARQAHEAGLMIGVGTDTGMTFV--------------PQYA------TW  357 (458)
T ss_dssp             HHHHHSCHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCCCTTSTTS--------------CTTC------HH
T ss_pred             hHHHhhhcccc-cCCHHHHHHHHHHHHHHHHHHHHHHHCCCeEEEecCCCCCCC--------------cccc------HH
Confidence            1  10110000 000000000000111234566788899999999999632 11              0111      11


Q ss_pred             HHHHHHHh-cCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEee
Q 013050          343 VTWSYGRK-YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG  420 (450)
Q Consensus       343 ~~~~~~~~-~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (450)
                      ..+..+.+ .++|++++++++|.|||+++|+ +++|+|++||.|||||+|.++..++  .         .        ..
T Consensus       358 ~e~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~Gsi~~Gk~ADlvvld~~p~~~~--~---------~--------~~  418 (458)
T 2p9b_A          358 RELELLVAYAGFSPAEALHAATAVNASILGVDAETGSLEVGKSADLLVLNANPLDDL--R---------A--------LE  418 (458)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTTCG--G---------G--------GT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCcCCCCccCCCCcCCEEEECCCchhCH--H---------H--------hc
Confidence            12223334 5899999999999999999999 6689999999999999998752111  0         0        02


Q ss_pred             EEEEEEECCeEEEec--Cccc
Q 013050          421 KVLATISRGNLVYKE--GNHA  439 (450)
Q Consensus       421 ~v~~v~v~G~~v~~~--g~~~  439 (450)
                      +|..||++|++||++  +++.
T Consensus       419 ~v~~v~v~G~~v~~~~~~~~~  439 (458)
T 2p9b_A          419 HPALVIAAGHPVWRPGPKRFA  439 (458)
T ss_dssp             SCSEEEETTEECCSCCCCCCH
T ss_pred             cceEEEECCEEEecCchhhhh
Confidence            678999999999988  7665

>3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*

Probab=100.00  E-value=3.8e-32  Score=263.59  Aligned_cols=332  Identities=15%  Similarity=0.138  Sum_probs=200.6

Q ss_pred             eeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccch-----------HHHHHHHHhCC
Q 013050            4 RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGF-----------PSGTKAAAAGG   72 (450)
Q Consensus         4 ~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~-----------~~~~~~~~~~G   72 (450)
                      ++|+|+||||++|++. . +   .+.++||++|++|+|||||+|+|+.......|+.+           ....+.++++|
T Consensus        26 ~~v~I~~g~I~~ig~~-~-~---~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G  100 (408)
T 3be7_A           26 ADLLIRNGKIAEIGKI-N-T---KDATVISIPDLILIPGLMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAG  100 (408)
T ss_dssp             CEEEEETTEEEEEECC-C-C---SSSEEEEEEEEEEEECEEEEEECCSSCCCCSGGGTTCCTHHHHHHHHHHHHHHHTTT
T ss_pred             eEEEEECCEEEEEeCC-C-C---CCCeEEECCCCEECcCceeeeEcccCCCCcchhhhcCCHHHHHHHHHHHHHHHHHcC
Confidence            7899999999999976 2 1   35689999999999999999999972221222211           11567889999


Q ss_pred             ceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecc-------ccCC-------------CccchHH----HHHH
Q 013050           73 ITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG-------LVPE-------------NAYNASA----LEAL  128 (450)
Q Consensus        73 vT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------------~~~~~~~----~~~~  128 (450)
                      |||+++++ +..+   ....+....+... ....++...+.       ....             .....+.    +++.
T Consensus       101 vTtv~d~~-~~~~---~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (408)
T 3be7_A          101 FTTVRNVG-AANY---ADVSVRDAIERGV-INGPTMLVSGPALGITGGHCDHNLLPPEFNYSSEGVVDSPWEARKMVRKN  175 (408)
T ss_dssp             EEEEEECC-CSTT---HHHHHHHHHHTTS-SCCCEEEECCSCBBCTTSTTSCCCSCTTTCCCCTTBCCSHHHHHHHHHHH
T ss_pred             CCEEEeCC-Cccc---cCHHHHHHHHCCC-CCCCEEEEccceeeccCCCCccccccccccccCCcccCCHHHHHHHHHHH
Confidence            99999996 3322   1112222211111 00112222110       0000             0112233    3444


Q ss_pred             HHcCCcEEEEecccC-----CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCC
Q 013050          129 LNAGVLGLKSFMCPS-----GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTR  203 (450)
Q Consensus       129 ~~~g~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (450)
                      .+.|+..++.+....     ...+.+..+.+.+.++++.|+++|+++.+|+.+..                         
T Consensus       176 ~~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~-------------------------  230 (408)
T 3be7_A          176 RKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKVAAHAHGLI-------------------------  230 (408)
T ss_dssp             HHTTCSEEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCEEEEEECSHH-------------------------
T ss_pred             HhcCCCEEEEEecCCcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHH-------------------------
Confidence            557888888875321     11123567889999999999999999999995432                         


Q ss_pred             ChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEE
Q 013050          204 PPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC  283 (450)
Q Consensus       204 p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  283 (450)
                             .+..+++    .       +.. .+.|+..  ...+.++.+++.|+.+............      .+.....
T Consensus       231 -------~i~~~~~----~-------g~~-~i~H~~~--~~~~~i~~~~~~g~~v~~~~~~~~~~~~------~~~~~~~  283 (408)
T 3be7_A          231 -------GIKAAIK----A-------GVD-SVEHASF--IDDETIDMAIKNNTVLSMDIFVSDYILG------EGAKAGI  283 (408)
T ss_dssp             -------HHHHHHH----H-------TCS-EEEECTT--CCHHHHHHHHHTTCEEECCCSTHHHHHT------TTTTTTC
T ss_pred             -------HHHHHHH----c-------CCC-EEEECCC--CCHHHHHHHHHCCCEEeeeecHHHHhhh------hccccCC
Confidence                   1233332    2       332 4677775  3456777777788655432111100000      0000001


Q ss_pred             cCCCCCh------hhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHH
Q 013050          284 APPIRDA------ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ  357 (450)
Q Consensus       284 ~~~~~~~------~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~  357 (450)
                      .|+.+..      .....++.+++.|+.+++|||+.+ .+.              +...      ..+..+.+.++|+++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~gTD~~~-~p~--------------~~~~------~~~~~~~~~gls~~~  342 (408)
T 3be7_A          284 REESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGI-FDH--------------GDNA------KQFAYMVEWGMTPLE  342 (408)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTCCEECCCCBTT-BCT--------------TCGG------GHHHHHHHTTCCHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-CCC--------------chHH------HHHHHHHHcCCCHHH
Confidence            1111000      113556778889999999999742 110              1111      111223445999999


Q ss_pred             HHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCc
Q 013050          358 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN  437 (450)
Q Consensus       358 al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~  437 (450)
                      +++++|.|||+++|++++|+|++||.|||||+|.++..++.           .        ..+|..||++|++|+++.-
T Consensus       343 al~~~T~n~A~~lgl~~~G~i~~G~~ADlvvld~~p~~~~~-----------~--------~~~v~~v~~~G~~v~~~~~  403 (408)
T 3be7_A          343 AIQASTIKTATLFGIENIGQIKEGFDADIVGVIENPLANIR-----------T--------LEEVAFVMKEGKVYKREGH  403 (408)
T ss_dssp             HHHTTTHHHHHHHTCSSCSSCCTTSBCCEEEESSCTTTCGG-----------G--------TTSCCEEEETTEEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCcccccCCCCccCEEEECCCchhhHH-----------H--------hhceeEEEECCEEEecccc
Confidence            99999999999999976899999999999999987522110           0        0267899999999998754

>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9

Probab=100.00  E-value=3.6e-33  Score=275.47  Aligned_cols=359  Identities=15%  Similarity=0.049  Sum_probs=204.5

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC------CCC--c---------------c
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP------GRT--E---------------W   58 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~------~~~--~---------------~   58 (450)
                      .+++|+|+||||++|++..+.+...++.++||++|++|+|||||+|+|+...      +..  .               .
T Consensus        34 ~~~~V~I~~G~I~~Vg~~~~~~~~~~~~~viD~~G~~v~PG~ID~H~Hl~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~  113 (475)
T 2ood_A           34 QDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHIHLPQTRVLGAYGEQLLPWLQKSIYPEEIKYKDR  113 (475)
T ss_dssp             EEEEEEEESSBEEEEEEHHHHHHHSTTCEEEEEEEEEEEECEEEEEEEGGGTTCTTCCSCCHHHHHHHHTHHHHGGGGSH
T ss_pred             ECCEEEEECCEEEEEeChhhhccccCCCeEEeCCCcEEecceecCcccHHhHhhcCCCCCCHHHHHHHhccchhhccCCH
Confidence            4689999999999999753221001356899999999999999999998532      110  0               1


Q ss_pred             cch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CceEEE--Eecc-cc----CCCccchHHHH
Q 013050           59 EGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVG--FWGG-LV----PENAYNASALE  126 (450)
Q Consensus        59 ~~~----~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~-~~----~~~~~~~~~~~  126 (450)
                      +.+    ....+.++++|||++++++ ..     ....+....+..... ..+.++  .... ..    ....+..+...
T Consensus       114 e~~~~~~~~~~~~~l~~GvTtv~~~~-~~-----~~~~~~~~~~~~~~~g~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~  187 (475)
T 2ood_A          114 NYAREGVKRFLDALLAAGTTTCQAFT-SS-----SPVATEELFEEASRRNMRVIAGLTGIDRNAPAEFIDTPENFYRDSK  187 (475)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEEEEEEC-CS-----SHHHHHHHHHHHHHHTCCEEECCEECCSSSCTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCceEEEEec-cc-----CchhHHHHHHHHHHcCCeEEEEeeecccCCCcccccCHHHHHHHHH
Confidence            112    2236688999999999975 22     222233333322221 111111  1110 00    00011223344


Q ss_pred             HHHHc--CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEecCCh-hhhhhhhhhccCcCCccccccccCC
Q 013050          127 ALLNA--GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKT  202 (450)
Q Consensus       127 ~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  202 (450)
                      ++.+.  +...++..+.+   ...+.++++.+.++++.|+++ |+++.+|+.+. ..+.......+             .
T Consensus       188 ~~~~~~~~~~~~~~~~~~---~~~~~~~~e~l~~~~~~a~~~~g~~v~~H~~e~~~~~~~~~~~~g-------------~  251 (475)
T 2ood_A          188 RLIAQYHDKGRNLYAITP---RFAFGASPELLKACQRLKHEHPDCWVNTHISENPAECSGVLVEHP-------------D  251 (475)
T ss_dssp             HHHHHHTTBTTEEEEEEE---CBGGGCCHHHHHHHHHHHHHCTTSEEEEECSCCHHHHHHHHHHCT-------------T
T ss_pred             HHHHHhccCCceEEEEec---cccCcCCHHHHHHHHHHHHhCCCCcEEEeeCCChHHHHHHHHHcC-------------C
Confidence            44431  22223332222   122457889999999999999 99999999532 22221111100             0


Q ss_pred             CChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceE
Q 013050          203 RPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFK  282 (450)
Q Consensus       203 ~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~  282 (450)
                               ....+++.++.   + ..+.+..+.|+...  +.+.++.+++.|+.  +.+||......       +   .
T Consensus       252 ---------~~~~~~~~~~~---g-~~~~~~~i~H~~~~--~~~~i~~~~~~g~~--~~~~P~~~~~l-------~---~  304 (475)
T 2ood_A          252 ---------CQDYLGVYEKF---D-LVGPKFSGGHGVYL--SNNEFRRMSKKGAA--VVFCPCSNLFL-------G---S  304 (475)
T ss_dssp             ---------CSSHHHHHHTT---T-CCSTTEEEECCTTC--CHHHHHHHHHHTCE--EEECHHHHHHT-------T---C
T ss_pred             ---------CccHHHHHHHc---C-CCCCCcEEEEeecC--CHHHHHHHHHcCCE--EEEChhhhhhc-------c---c
Confidence                     00122333322   0 11445667777653  22456666666754  44477543210       0   0


Q ss_pred             EcCCCCChhhHHHHHHHHhcCCe--eEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-------------
Q 013050          283 CAPPIRDAANKEKLWEALMDGHI--DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-------------  347 (450)
Q Consensus       283 ~~~~~~~~~~~~~l~~~~~~g~~--~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------------  347 (450)
                      ..         ..++++++.|+.  +++|||+.+......                ... +......             
T Consensus       305 ~~---------~~~~~~~~~Gv~~~~~lgTD~~~~~~~~~----------------~~~-~~~~~~~~~~~~~~~~~~~~  358 (475)
T 2ood_A          305 GL---------FRLGRATDPEHRVKMSFGTDVGGGNRFSM----------------ISV-LDDAYKVGMCNNTLLDGSID  358 (475)
T ss_dssp             CC---------CCHHHHTCTTSCCEEEECCCBTTBSCCCH----------------HHH-HHHHHHHHHHHHHHSSSSSC
T ss_pred             Cc---------CCHHHHHhCCCCCcEEEEccCCCCCCcCH----------------HHH-HHHHHHHhcccchhccCCcc
Confidence            11         124577889999  999999765221100                000 0000000             


Q ss_pred             --------HHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcc------c----CCC
Q 013050          348 --------GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVH------M----KHP  408 (450)
Q Consensus       348 --------~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~------~----~~~  408 (450)
                              ..+.++|++++++++|.|||+++|+ +++|+|++||.|||||+|.++.+..... ...      +    ...
T Consensus       359 p~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~GsL~~Gk~ADlvvld~~~~~~~~~~-~~~~~~~~~s~~~~~~~  437 (475)
T 2ood_A          359 PSRKDLAEAERNKLSPYRGFWSVTLGGAEGLYIDDKLGNFEPGKEADFVALDPNGGQLAQPW-HQSLIADGAGPRTVDEA  437 (475)
T ss_dssp             GGGCCHHHHHHTCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEECTTCSSTTHHH-HHTTC--CCSCCSHHHH
T ss_pred             cccccccccccCCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCccCEEEEeCCCccccccc-cccccccccccccccch
Confidence                    1236899999999999999999999 6689999999999999998864432110 000      0    001


Q ss_pred             CccccCCceE---eeEEEEEEECCeEEEecCc
Q 013050          409 SISAYLGRRL---SGKVLATISRGNLVYKEGN  437 (450)
Q Consensus       409 ~~~~~~~~~~---~~~v~~v~v~G~~v~~~g~  437 (450)
                       ++||.+.++   .++|..|||+|++||++.+
T Consensus       438 -~~p~~~~~~~~~~~~V~~t~v~G~~v~~~~~  468 (475)
T 2ood_A          438 -ASMLFAVMMVGDDRCVDETWVMGKRLYKKSE  468 (475)
T ss_dssp             -HHHHHHHHHHCCGGGEEEEEETTEEEEECC-
T ss_pred             -hhHHHHHHhhCCCCCeeEEEECCEEEEECCC
Confidence             446665554   3689999999999999876

>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C*

Probab=100.00  E-value=3.8e-32  Score=270.20  Aligned_cols=336  Identities=22%  Similarity=0.257  Sum_probs=214.5

Q ss_pred             cceeEEEeCCEEEEeccCCCCC---------CCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWP---------RNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG   72 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~---------~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~G   72 (450)
                      .+++|+|+||||++|++..++.         ...++.++||++|++|+|||||+|+|+..+.         ..+.++++|
T Consensus        82 ~~~dI~I~dGrI~~IG~~~~~~~~~~~~~~~~~~~~~evIDa~G~iV~PGlID~HvHl~~p~---------~~~~al~~G  152 (569)
T 1e9y_B           82 YKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISPQ---------QIPTAFASG  152 (569)
T ss_dssp             EEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECEEEEEEETTCTT---------HHHHHHHTT
T ss_pred             EeeeEEEECCEEEEeecCCCccccccccccccCCCCCeEEECCCCEEecCEEEEeecCCCcH---------HHHHHHhCC
Confidence            4689999999999999764311         0023568999999999999999999997653         257889999


Q ss_pred             ceEEEeCCCCCC----C--CCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCC
Q 013050           73 ITTLIDMPLNSD----P--STISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN  146 (450)
Q Consensus        73 vT~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  146 (450)
                      |||+++++.+..    +  .......+....+... ...+++.+++...   ....+.+.++++.|+.+++.+..+    
T Consensus       153 vTTv~d~g~~p~~~t~~~~~~~g~~~l~~~~~a~~-~~~~~~~~~g~g~---~~~~~~l~e~~~~Ga~gik~~~~~----  224 (569)
T 1e9y_B          153 VTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAE-EYSMNLGFLAKGN---ASNDASLADQIEAGAIGFKIHEDW----  224 (569)
T ss_dssp             EEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHT-TSSSEEEEEEECC---CSCHHHHHHHHHTTCSEEEECGGG----
T ss_pred             eeEEEcCCcCCCCCCcCcccCCcHHHHHHHHHHhc-ccCceEEEECCCC---cCCHHHHHHHHHcCCCEEEecCCC----
Confidence            999999852110    0  1111344444444443 3456776654321   234567888888999999986533    


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050          147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG  226 (450)
Q Consensus       147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~  226 (450)
                         ..+.+.+.++++.|+++|+++.+|+++...           .+                  .+...+  +...    
T Consensus       225 ---~~t~e~l~~~l~~A~~~g~~V~iHa~~~~e-----------~g------------------~~~~~l--a~~~----  266 (569)
T 1e9y_B          225 ---GTTPSAINHALDVADKYDVQVAIHTDTLNE-----------AG------------------CVEDTM--AAIA----  266 (569)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCEEEECCCTTCS-----------SC------------------CHHHHH--HHHT----
T ss_pred             ---CCCHHHHHHHHHHHHHhCCEEEEEcCCccc-----------ch------------------HHHHHH--HHHc----
Confidence               468899999999999999999999964211           00                  011112  1222    


Q ss_pred             CCCCceEEEEecCChhHH---HHHHHHHHhCCCcEEEecCcchhcccccccCC-CCC---ceEEcCCC---------CCh
Q 013050          227 PAEGAHLHIVHLSDASSS---LDLLMEAKTNGDSITVETCPHYLAFSAEEIPD-GDT---RFKCAPPI---------RDA  290 (450)
Q Consensus       227 ~~~~~~~~~~h~~~~~~~---~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~---------~~~  290 (450)
                         +.++|+.|++.. ..   .+.++.+++.|+  ....++.++.++.+.... .+.   .....+++         +..
T Consensus       267 ---g~~~hi~H~~~~-~~~~~~d~I~~~~~~gv--~~~~~~ptl~~t~~~~~~~~d~~~v~h~l~~~~~ed~~~~~~rlr  340 (569)
T 1e9y_B          267 ---GRTMHTFHTEGA-GGGHAPDIIKVAGEHNI--LPASTNPTIPFTVNTEAEHMDMLMVCHHKDKSIKEDVQFADSRIR  340 (569)
T ss_dssp             ---TCCEEETTTTST-TSCSTTTGGGGGGSTTE--EEEECGGGCSCBTTHHHHHHHHHHHTTTCCSSCHHHHHHHHHHCC
T ss_pred             ---CCCEEEEEcccC-cccccHHHHHHHHHcCC--eeEeeCCccccccchhhhhhchhhhhhhcCcccHHHHHHhhcchh
Confidence               778999999874 33   677788777764  222233233222111000 000   01111221         011


Q ss_pred             hhHHHHHHHHh-cCCeeEEcCCCCCCChh-------h----hcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHH
Q 013050          291 ANKEKLWEALM-DGHIDMLSSDHSPTVPE-------L----KLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL  358 (450)
Q Consensus       291 ~~~~~l~~~~~-~g~~~~~gtD~~~~~~~-------~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~a  358 (450)
                      .....+++.+. .|+.+++|||+.+....       +    ++..       ..|....+        ...+.+++++++
T Consensus       341 ~~~~a~~~~L~d~Gv~v~iGSD~~~~~~~g~~~~~~~~~~~~~~~-------~~G~l~~~--------~~~~~~ls~~~a  405 (569)
T 1e9y_B          341 PQTIAAEDTLHDMGAFSITSSDSQAMGRVGEVITRTWQTADKNKK-------EFGRLKEE--------KGDNDNFRIKRY  405 (569)
T ss_dssp             HHHHHHHHHHHHTTSCCEECCCTTSSCCTTSHHHHHHHHHHHHHH-------HHCSCSSC--------CSSSCHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCEEEEeCCCCccCcccccccchhhHHHHhHh-------hccCcchh--------hccccCCCHHHH
Confidence            23455666666 69999999998765421       0    0000       00000000        002345889999


Q ss_pred             HHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec-C
Q 013050          359 ASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE-G  436 (450)
Q Consensus       359 l~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~-g  436 (450)
                      ++++|.|||+++|+ +++|+|++||.|||||||.++.            .            .++..||++|++||.+ |
T Consensus       406 l~~~T~npA~~lGl~~~~GsIe~Gk~ADlvv~d~~~~------------~------------~~v~~v~~~G~iv~~~~g  461 (569)
T 1e9y_B          406 LSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFF------------G------------VKPNMIIKGGFIALSQMG  461 (569)
T ss_dssp             HGGGTHHHHHHTTCTTTSSSSCTTSBCCEEEECTTTT------------T------------TCCSEEEETTEEEEEEEC
T ss_pred             HHHHhHHHHHHcCCCCCccCcCCCCCCCEEEECchhc------------C------------CCccEEEECCEEEEcCCC
Confidence            99999999999999 6699999999999999997641            0            2677999999999986 5


Q ss_pred             c
Q 013050          437 N  437 (450)
Q Consensus       437 ~  437 (450)
                      .
T Consensus       462 ~  462 (569)
T 1e9y_B          462 D  462 (569)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A

Probab=100.00  E-value=6.2e-32  Score=266.16  Aligned_cols=359  Identities=16%  Similarity=0.121  Sum_probs=198.9

Q ss_pred             cceeEEEeC-CEEEEeccCCCCC-----CCCCCCcEEec-CCCEEeccceeeccccCCCCCC---------cc-------
Q 013050            2 CKRAVEIKE-GNIISIVSEEDWP-----RNSKTGQVVDY-GEAVIMPGLIDVHAHLDDPGRT---------EW-------   58 (450)
Q Consensus         2 ~~~~V~I~~-g~I~~Ig~~~~~~-----~~~~~~~viD~-~g~~v~PG~iD~H~H~~~~~~~---------~~-------   58 (450)
                      .+++|+|++ |||++|++..+.+     ...++.+++|+ +|++|||||||+|+|+....+.         .|       
T Consensus        52 ~~~~v~I~~~g~I~~vg~~~~~~~~~~~~~~~~~~viD~~~g~~v~PG~ID~H~H~~~~~~rg~~~d~~l~~wL~~~~~p  131 (476)
T 4aql_A           52 RDHLLGVSDSGKIVFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMPGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFP  131 (476)
T ss_dssp             EEEEEEECTTSBEEEEEEGGGHHHHHHHTTCCGGGCEECCTTCEEEECEEEEEEEGGGGGGTTSCCCSCHHHHHHHTHHH
T ss_pred             cCcEEEEecCCeEEEecCcchhhhhhhhccCCCceEEEcCCCCEEeCCeeccccchHHHHHHHHhcCCCHHHHHHHhhhh
Confidence            568999998 9999999864321     11245689995 5899999999999998432111         11       


Q ss_pred             -------c-----chHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc---CCceEEEEecccc------CC
Q 013050           59 -------E-----GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK---RIYVDVGFWGGLV------PE  117 (450)
Q Consensus        59 -------~-----~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------~~  117 (450)
                             +     .......+++++|||++.+++ .     ...+......+....   +..+.........      ..
T Consensus       132 ~e~~~~~~~~~~~~~~~~~~e~l~~G~Tt~~~~~-~-----~~~~~~~~~~~a~~~~G~r~~~~~~~~d~~~~~p~~~~~  205 (476)
T 4aql_A          132 AEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFA-T-----IHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPEYKET  205 (476)
T ss_dssp             HHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEEC-C-----SCHHHHHHHHHHHHHHTCEEEEECEECSCCSSCTTSCCC
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHCCeeEEEEec-c-----cCchHHHHHHHHHHHhCCEEEEeeccccCCCCCcccccC
Confidence                   0     011223578999999999875 1     122322222222221   1111111111000      00


Q ss_pred             CccchHHHHHH----HHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChh-hhhhhhhhccCcCC
Q 013050          118 NAYNASALEAL----LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLD  192 (450)
Q Consensus       118 ~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~  192 (450)
                      .....+...++    ...+...++..+.+.   ..+.++.+.++++++.|+++|+++.+|+.+.. .+.......+..  
T Consensus       206 ~~~~l~~~~~~i~~~~~~~~~~v~~~l~p~---~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~~~~--  280 (476)
T 4aql_A          206 TEESIKETERFVSEMLQKNYSRVKPIVTPR---FSLSCSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSY--  280 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSEEECBEEC---CTTTSCHHHHHHHHHHHHHTTCCEEEEESCSHHHHHHHHHHCTTS--
T ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEEEeCC---cCCcCCHHHHHHHHHHHHHcCCceEEEecCCHHHHHHHHHHhCCC--
Confidence            01122223333    222333344444332   22467899999999999999999999995432 222221111100  


Q ss_pred             ccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccc
Q 013050          193 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE  272 (450)
Q Consensus       193 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~  272 (450)
                                          ....+...+.  +  ..+.+..+.|+...  +.+.++.+++.++.+..  ||........
T Consensus       281 --------------------~~~~~~~~~~--g--~l~~~~~~~H~~~l--~~~~~~~l~~~g~~v~~--~P~sn~~l~~  332 (476)
T 4aql_A          281 --------------------KNYTSVYDKN--N--LLTNKTVMAHGCYL--SAEELNVFHERGASIAH--CPNSNLSLSS  332 (476)
T ss_dssp             --------------------SSHHHHHHTT--T--CCSTTEEEEECTTC--CHHHHHHHHHHTCEEEE--CHHHHHHTTC
T ss_pred             --------------------CCHHHHHHHc--C--CCCCCEEEEeCCCC--CHHHHHHHHHcCCEEEE--CchhhhhhCc
Confidence                                0111222221  0  11445667777652  22345555666655444  7754322110


Q ss_pred             ccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhH-HHHHHHHH---
Q 013050          273 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYG---  348 (450)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~---  348 (450)
                                .         ...+.++++.|+.+++|||..+... .               ...... ....+...   
T Consensus       333 ----------g---------~~p~~~~~~~Gv~v~lGtD~~~~~~-~---------------~~~~~~~~a~~~~~~~~~  377 (476)
T 4aql_A          333 ----------G---------FLNVLEVLKHEVKIGLGTDVAGGYS-Y---------------SMLDAIRRAVMVSNILLI  377 (476)
T ss_dssp             ----------C---------CCCHHHHHHTTCEEEECCCTTTSSC-C---------------CHHHHHHHHHHHHHHHHH
T ss_pred             ----------c---------hHHHHHHHHCCCcEEEeCCCCCCCC-C---------------CHHHHHHHHHHHHhhhhc
Confidence                      0         0124566789999999999753211 1               111111 11111111   


Q ss_pred             ---HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCC----cccCCCCccccCCceEe-
Q 013050          349 ---RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHP----VHMKHPSISAYLGRRLS-  419 (450)
Q Consensus       349 ---~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-  419 (450)
                         ...++|++++++++|.|||+++|+ +++|+|++||.|||||+|.+.+.+ +.. .    +..... ++|+...++. 
T Consensus       378 ~~~~~~~l~~~~al~~aT~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~-p~~-~~~~~~~~~~~-~~~~~~~v~~~  454 (476)
T 4aql_A          378 NKVNEKSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILINPKASDS-PID-LFYGDFFGDIS-EAVIQKFLYLG  454 (476)
T ss_dssp             TTSSSSCCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEECTTCTTC-SCC-CCTHHHHSSST-THHHHHHHHHC
T ss_pred             ccCCCCcCCHHHHHHHHHHHHHHHhCCCCCcceeCCCCCCCEEEEcCCCCCC-ccc-cccccccCCch-hcHHHHHhhcC
Confidence               125899999999999999999999 668999999999999999885321 000 0    000111 3344443332 


Q ss_pred             --eEEEEEEECCeEEEecCc
Q 013050          420 --GKVLATISRGNLVYKEGN  437 (450)
Q Consensus       420 --~~v~~v~v~G~~v~~~g~  437 (450)
                        .+|..|||+|++||+.+.
T Consensus       455 ~~~~V~~v~v~G~~v~~~~~  474 (476)
T 4aql_A          455 DDRNIEEVYVGGKQVVPFSS  474 (476)
T ss_dssp             CGGGEEEEEETTEEEECCC-
T ss_pred             CCCCccEEEECCEEEecCCC
Confidence              359999999999998754

>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A

Probab=100.00  E-value=7.6e-32  Score=263.15  Aligned_cols=350  Identities=17%  Similarity=0.182  Sum_probs=203.9

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc-------------------------
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-------------------------   57 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~-------------------------   57 (450)
                      .++|+|+||||++|++..+.+  .++.++||++|++|+|||||+|+|+.......                         
T Consensus        23 ~~~v~I~~g~I~~vg~~~~~~--~~~~~viD~~G~~v~PGlID~H~Hl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  100 (430)
T 1ra0_A           23 LWQIHLQDGKISAIDAQSGVM--PITENSLDAEQGLVIPPFVEPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLT  100 (430)
T ss_dssp             EEEEEEETTEEEEEEEESSCC--CCCTTEEECTTCEEESCEEEEEECTTTTTCTTSSSCCSSCCHHHHHHHHHHHHTTCC
T ss_pred             eeEEEEECCEEEEeecCCCCC--CCCcceEccCCCEecccccccccchhhhhhcCCCcCCCCCCHHHHHHHhHHhhhhcC
Confidence            578999999999999765432  13568999999999999999999996532110                         


Q ss_pred             ccchHH----HHHHHHhCCceEEEeCCCCC-CCCCCcHHHHHHHHHHHhcCCceEEEEecccc--C-CCccchHHHHHHH
Q 013050           58 WEGFPS----GTKAAAAGGITTLIDMPLNS-DPSTISTETLKLKVDAAEKRIYVDVGFWGGLV--P-ENAYNASALEALL  129 (450)
Q Consensus        58 ~~~~~~----~~~~~~~~GvT~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~  129 (450)
                      .+++..    ..++++++|||++++++ +. .+.......+....+..  ...+.+..+....  . ......+.++++.
T Consensus       101 ~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (430)
T 1ra0_A          101 HDDVKQRAWQTLKWQIANGIQHVRTHV-DVSDATLTALKAMLEVKQEV--APWIDLQIVAFPQEGILSYPNGEALLEEAL  177 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEEEEEEEE-ECCSTTCHHHHHHHHHHHHH--TTTCEEEEEEECTTCSSSSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCccEEeecc-ccCChHHHHHHHHHHHHHhh--hhhEEEEEEecCCcccccCchHHHHHHHHH
Confidence            011222    23466899999999986 33 22211122222221221  2333443221100  0 1122345577777


Q ss_pred             HcCCcEEEEecccCCCCCCCC---CCHHHHHHHHHHHHhcCCcEEEecCChh-hhhhhhhhccCcCCccccccccCCCCh
Q 013050          130 NAGVLGLKSFMCPSGINDFPM---TNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPP  205 (450)
Q Consensus       130 ~~g~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~  205 (450)
                      +.|...+ .+...     .+.   .+.+.++++++.|+++|+++.+|+.+.. ...                        
T Consensus       178 ~~g~~~~-~~~~~-----~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~------------------------  227 (430)
T 1ra0_A          178 RLGADVV-GAIPH-----FEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQS------------------------  227 (430)
T ss_dssp             HTTCSEE-CCCGG-----GSSSHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCTTC------------------------
T ss_pred             HhCCCeE-eeeec-----ccccccccHHHHHHHHHHHHHcCCCEEEEECCCCchhH------------------------
Confidence            7764332 21111     122   5778999999999999999999995422 100                        


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhH-----HHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCc
Q 013050          206 SWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS-----SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR  280 (450)
Q Consensus       206 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~-----~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~  280 (450)
                          ..++...+.+.+.   + . +.+.++.|+....+     ..+.++.+++.|+.+.  +||.........   ..  
T Consensus       228 ----~~~~~~~~~~~~~---g-~-~~~~~i~H~~~~~~~~~~~~~~~i~~~~~~gv~v~--~~p~~~~~~~~~---~~--  291 (430)
T 1ra0_A          228 ----RFVETVAALAHHE---G-M-GARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFV--ANPLVNIHLQGR---FD--  291 (430)
T ss_dssp             ----CHHHHHHHHHHHH---T-C-GGGEEEEECGGGGGSCHHHHHHHHHHHHHHTCEEE--ECHHHHHHHTTT---TC--
T ss_pred             ----HHHHHHHHHHHHh---C-C-CCCEEEEeccccccCChHhHHHHHHHHHHcCCEEE--ECchhhhhhccc---cC--
Confidence                0012222333322   0 1 44577788765311     2257777777776544  476532221111   01  


Q ss_pred             eEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh--cCCCHHHH
Q 013050          281 FKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK--YGVTLEQL  358 (450)
Q Consensus       281 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~gls~~~a  358 (450)
                        ..|+.+...   .++.+++.|+.+++|||+.+... ..          ......... +..... ...  .++|++++
T Consensus       292 --~~p~~~~~~---~~~~~~~~Gv~~~lgTD~~~~~~-~~----------~~~~~~~~~-~~~~~~-~~~~~~~~~~~~a  353 (430)
T 1ra0_A          292 --TYPKRRGIT---RVKEMLESGINVCFGHDGVFDPW-YP----------LGTANMLQV-LHMGLH-VCQLMGYGQINDG  353 (430)
T ss_dssp             --CSSCCCCCC---CHHHHHHTTCCEEECCBCSSBTT-BS----------CCCCCHHHH-HHHHHH-HTTCCSHHHHHGG
T ss_pred             --CCCCcCCCC---CHHHHHHCCCEEEEeCCCCcccC-CC----------CCCCCHHHH-HHHHHH-HHccCCcccHHHH
Confidence              123322221   24577889999999999763100 00          000011111 111110 111  13589999


Q ss_pred             HHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcc
Q 013050          359 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH  438 (450)
Q Consensus       359 l~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~  438 (450)
                      ++++|.|||+++|+++ |+|++||.|||||+|.+.++..     +             ....+|..||++|++||++|++
T Consensus       354 l~~~T~~~A~~lg~~~-G~i~~G~~ADlvv~d~~~~~~~-----~-------------~~~~~v~~v~~~G~~v~~~~~~  414 (430)
T 1ra0_A          354 LNLITHHSARTLNLQD-YGIAAGNSANLIILPAENGFDA-----L-------------RRQVPVRYSVRGGKVIASTQPA  414 (430)
T ss_dssp             GGGGTHHHHHHTTCSS-CSSCTTSBCCEEEESSSSHHHH-----H-------------HHTCCCSEEEETTEEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCC-cccCCCCcCCEEEEcCCChhHH-----H-------------hccCcceEEEECCEEEecCCcc
Confidence            9999999999999955 9999999999999998754311     0             0114788999999999999998


Q ss_pred             cC
Q 013050          439 AP  440 (450)
Q Consensus       439 ~~  440 (450)
                      +.
T Consensus       415 ~~  416 (430)
T 1ra0_A          415 QT  416 (430)
T ss_dssp             CE
T ss_pred             ee
Confidence            73

>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*

Probab=100.00  E-value=1e-30  Score=251.91  Aligned_cols=343  Identities=21%  Similarity=0.276  Sum_probs=202.4

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC---cccchHHHHHHHHhCCceEEEeC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT---EWEGFPSGTKAAAAGGITTLIDM   79 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~---~~~~~~~~~~~~~~~GvT~~~~~   79 (450)
                      .++|+|+||+|++|++..+... ..+.++||++|++|+|||||+|+|+...+..   ...+.....+.++++|+|+++++
T Consensus        25 ~~~v~i~~g~I~~ig~~~~~~~-~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~  103 (390)
T 1onw_A           25 ICDVLVANGKIIAVASNIPSDI-VPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGL  103 (390)
T ss_dssp             ECEEEEETTEEEEEETTCCTTS-SSSCEEEECTTCEEEECEEEEEECTTCCBCTTSGGGBCCCCCHHHHHHTTEEEEEEC
T ss_pred             cceEEEECCEEEEEecCcccCC-CCCCeEEeCCCCEECcCeeEeeECccccCccccccccCHHHHHHHHHHCCeeEEecC
Confidence            4689999999999997543110 1346799999999999999999998543211   01112234678899999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc-CCC--ccch-HHHHHHHHcCCcEEEEecccCCCCCCCCCCHHH
Q 013050           80 PLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-PEN--AYNA-SALEALLNAGVLGLKSFMCPSGINDFPMTNASH  155 (450)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  155 (450)
                      + ++.+.....+.+....+.........+...+... +..  .... ..+ .+. ....+++..+.+.   ..+..+.++
T Consensus       104 ~-~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~~~~~~---~~~~~~~~~  177 (390)
T 1onw_A          104 L-GTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDV-AII-DRVIGVKCAISDH---RSAAPDVYH  177 (390)
T ss_dssp             C-CSCCSSCCHHHHHHHHHHHHHHTSEEEEEEECSCSSCCCSSSCHHHHH-HHC-TTEEEEEEEESST---TSCCCCHHH
T ss_pred             C-CcccccCcHHHHHHHHHHHHhcCCceEEeccccCCCchhhhhhhcchh-hhH-HHhhcceeeecCC---CCCCCCHHH
Confidence            7 5555555555544444443322222232222221 111  1111 111 111 1222333333221   123567888


Q ss_pred             HHHHHHHHHhcCC------cEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCC
Q 013050          156 IKEGLSVLARYKR------PLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE  229 (450)
Q Consensus       156 l~~~~~~a~~~g~------~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  229 (450)
                      ++++++.+++.+.      .+.+|.....                               ..++.+.++.+..       
T Consensus       178 l~~~~~~a~~~~~~~~~~g~~~~h~~~~~-------------------------------~~~~~~~~~~~~g-------  219 (390)
T 1onw_A          178 LANMAAESRVGGLLGGKPGVTVFHMGDSK-------------------------------KALQPIYDLLENC-------  219 (390)
T ss_dssp             HHHHHHHHHHHHHHHTSCCEEEEEECSCT-------------------------------TTTHHHHHHHHTC-------
T ss_pred             HHHHHHHHhhhhhhhccCceEEEEeCCCH-------------------------------HHHHHHHHHHhcc-------
Confidence            8888888776543      3667762211                               0123444444432       


Q ss_pred             CceE---EEEecCChhHHH-HHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCe
Q 013050          230 GAHL---HIVHLSDASSSL-DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI  305 (450)
Q Consensus       230 ~~~~---~~~h~~~~~~~~-~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~  305 (450)
                      +.++   +..|+...+... +.++.+++.+. +.+. ++                  ..|+   ......++++++.|+.
T Consensus       220 ~~~v~~l~~~h~~~~~~~~~~~~~~~~~~~~-~~~~-~~------------------~~~~---~~~~~~l~~~~~~g~~  276 (390)
T 1onw_A          220 DVPISKLLPTHVNRNVPLFEQALEFARKGGT-IDIT-SS------------------IDEP---VAPAEGIARAVQAGIP  276 (390)
T ss_dssp             CCCGGGEEEECGGGSHHHHHHHHHHHHTTCC-EEEE-TT------------------CCSS---SCHHHHHHHHHHTTCC
T ss_pred             CCceEEeeccccccCHHHHHHHHHHHhcCCc-cccc-cc------------------cCCC---CcCHHHHHHHHHcCCC
Confidence            3322   235664331222 34444444332 1110 11                  1122   1456778999999974


Q ss_pred             ---eEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCC
Q 013050          306 ---DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGN  382 (450)
Q Consensus       306 ---~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~  382 (450)
                         ++++||+.+..+...  ..+.  ..+.|..+....+..+.......++|++++++++|.|||++||+++.|+|++|+
T Consensus       277 ~d~i~l~TD~~~~~~~~~--~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~npA~~~gl~~~G~i~~G~  352 (390)
T 1onw_A          277 LARVTLSSDGNGSQPFFD--DEGN--LTHIGVAGFETLLETVQVLVKDYDFSISDALRPLTSSVAGFLNLTGKGEILPGN  352 (390)
T ss_dssp             GGGEEEECCBTCC-----------------CCCCSHHHHHHHHHHHHHHCCCHHHHHGGGTHHHHHHTTCTTCSSCCTTS
T ss_pred             ccceEEEccCCCCCcccC--Cccc--cccccCCCHHHHHHHHHHHHHHcCCCHHHHHHHHhHHHHHHhCCCCCcccCCCC
Confidence               699999875432111  0111  123355556666666555455679999999999999999999996689999999


Q ss_pred             CccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCcc
Q 013050          383 HADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSP  446 (450)
Q Consensus       383 ~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~  446 (450)
                      +|||+|+|.+  +                         .|..||++|++||++|+++.+  |+|
T Consensus       353 ~ADlvv~d~~--~-------------------------~v~~v~~~G~~v~~~g~~~~~--g~~  387 (390)
T 1onw_A          353 DADLLVMTPE--L-------------------------RIEQVYARGKLMVKDGKACVK--GTF  387 (390)
T ss_dssp             BCCEEEECTT--C-------------------------CEEEEEETTEEEEETTEESSC--CTT
T ss_pred             cCCEEEEcCC--C-------------------------cEEEEEECCEEEEECCeEccc--ccc
Confidence            9999999954  1                         578999999999999999865  765

>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A

Probab=99.98  E-value=2.6e-31  Score=258.75  Aligned_cols=330  Identities=18%  Similarity=0.167  Sum_probs=185.0

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcc------------------------
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW------------------------   58 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~------------------------   58 (450)
                      .++|+|+||||++|++..+.. ..+..++||++|++|+|||||+|+|+........                        
T Consensus        37 ~~~v~I~~g~I~~vg~~~~~~-~~~~~~viD~~G~~v~PGfID~H~H~~~~~~~~~~~~~~~~g~~~~~~~~~gggi~~~  115 (421)
T 2bb0_A           37 DAVVGIHEQKIVFAGQKGAEA-GYEADEIIDCSGRLVTPGLVDPHTHLVFGGSREKEMNLKLQGISYLDILAQGGGILST  115 (421)
T ss_dssp             EEEEEEETTEEEEEEETTTTT-TCEEEEEEECTTCEEEECEEECCBCCCCCSCCGGGHHHHHTTCCHHHHHHTTCTHHHH
T ss_pred             cceEEEECCEEEEEecccccc-cCCCCeEEeCCCCEeccCeeccCcCccccccchHHHHHHHhCCCHHHHhhcCCCcccc
Confidence            578999999999999754100 0023579999999999999999999965432110                        


Q ss_pred             ---------cchH----HHHHHHHhCCceEEEeCCCCCCCCCC-cHHHHHHHHHHHhcCCceEEE--Eeccc--cCCCc-
Q 013050           59 ---------EGFP----SGTKAAAAGGITTLIDMPLNSDPSTI-STETLKLKVDAAEKRIYVDVG--FWGGL--VPENA-  119 (450)
Q Consensus        59 ---------~~~~----~~~~~~~~~GvT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~-  119 (450)
                               +.+.    ...+.++++|||++.++. ....... ....+... +.......+++.  ..+..  ..... 
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (421)
T 2bb0_A          116 VKDTRAASEEELLQKAHFHLQRMLSYGTTTAEVKS-GYGLEKETELKQLRVA-KKLHESQPVDLVSTFMGAHAIPPEYQN  193 (421)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHTTEEEEEEEC-CSCCSHHHHHHHHHHH-HHHHHHSSSEEEEEEEEESSCCGGGTT
T ss_pred             hhhhhcCCHHHHHHHHHHHHHHHHhcCceEEEecc-ccCcCccchHHHHHHH-HHHHhhcCceEEEEeeccccCChhhcc
Confidence                     0011    123678899999999853 1111000 01112222 222111122222  11111  11000 


Q ss_pred             ---cchHHH----HHHHHcC-CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcC
Q 013050          120 ---YNASAL----EALLNAG-VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL  191 (450)
Q Consensus       120 ---~~~~~~----~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~  191 (450)
                         ...+.+    ..+...+ +..++.+..      ....+.+.++++++.|+++|+++.+|+.....            
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~e~l~~~~~~a~~~g~~v~~H~~~~~~------------  255 (421)
T 2bb0_A          194 DPDDFLDQMLSLLPEIKEQELASFADIFTE------TGVFTVSQSRRYLQKAAEAGFGLKIHADEIDP------------  255 (421)
T ss_dssp             CHHHHHHHHHTTHHHHHHTTCCSEEEEBBC------TTSBCHHHHHHHHHHHHHTTCEEEEEECSSSC------------
T ss_pred             cHHHHHHHHHHhhHHhhccCccccccccCC------cCCCCHHHHHHHHHHHHHCCCCEEEEeccccc------------
Confidence               011111    1111222 223332211      12467899999999999999999999843210            


Q ss_pred             CccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccc
Q 013050          192 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA  271 (450)
Q Consensus       192 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~  271 (450)
                                 .      ..++    .+.+.       +. ..+.|+..  -..+.++.+++.|+.+  ..+|.......
T Consensus       256 -----------~------~~~~----~~~~~-------g~-~~~~H~~~--~~~~~i~~~~~~g~~~--~~~p~~~~~l~  302 (421)
T 2bb0_A          256 -----------L------GGAE----LAGKL-------KA-VSADHLVG--TSDEGIKKLAEAGTIA--VLLPGTTFYLG  302 (421)
T ss_dssp             -----------C------SHHH----HHHHT-------TC-SEEEECTT--CCHHHHHHHHHHTCEE--EECHHHHHHTT
T ss_pred             -----------c------CHHH----HHHHc-------CC-cEEhhhhc--CCHHHHHHHHHcCCeE--EECCchhhhhc
Confidence                       0      0011    11211       21 23566654  2234566666666544  44665432110


Q ss_pred             cccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC-ChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh
Q 013050          272 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT-VPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK  350 (450)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  350 (450)
                            +.            ....+..+++.|+.+++|||+.+. ++..                   ..+..+......
T Consensus       303 ------~~------------~~~~~~~~~~~Gv~v~lgtD~~~~~~~~~-------------------~~~~~~~~~~~~  345 (421)
T 2bb0_A          303 ------KS------------TYARARAMIDEGVCVSLATDFNPGSSPTE-------------------NIQLIMSIAALH  345 (421)
T ss_dssp             ------CC------------CCCCHHHHHHTTCCEEECCCBBTTTBCCC-------------------CHHHHHHHHHHH
T ss_pred             ------cc------------ccchHHHHHHCCCeEEEeCCCCCCCCccc-------------------CHHHHHHHHhcc
Confidence                  00            001245678899999999997542 1110                   111122222346


Q ss_pred             cCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECC
Q 013050          351 YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG  429 (450)
Q Consensus       351 ~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G  429 (450)
                      .++|++++|+|+|.|||+++|+ +++|+|+|||+|||||+|.|+...+.      +..          ...+|..|||+|
T Consensus       346 ~~ls~~eal~~~T~~~A~~lg~~~~~Gsl~~Gk~ADlvvld~~~~~~~~------~~~----------~~~~v~~t~v~G  409 (421)
T 2bb0_A          346 LKMTAEEIWHAVTVNAAYAIGKGEEAGQLKAGRSADLVIWQAPNYMYIP------YHY----------GVNHVHQVMKNG  409 (421)
T ss_dssp             SCCCHHHHHHHTTHHHHHHTTCTTTSSCCSTTSBCCEEEESSSSTTHHH------HSC----------SSCCEEEEEETT
T ss_pred             cCCCHHHHHHHHHHHHHHHhCccCCccccCCCCcCCEEEECCcccccCH------hHc----------CCCceEEEEECC
Confidence            7899999999999999999999 67999999999999999987532211      100          013799999999


Q ss_pred             eEEEec-Cccc
Q 013050          430 NLVYKE-GNHA  439 (450)
Q Consensus       430 ~~v~~~-g~~~  439 (450)
                      ++||+. |+++
T Consensus       410 ~~v~~~~g~~~  420 (421)
T 2bb0_A          410 TIVVNREGAIL  420 (421)
T ss_dssp             EEEEEC-----
T ss_pred             EEEEeCCcccc
Confidence            999975 7665

>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*

Probab=99.98  E-value=3.7e-31  Score=257.15  Aligned_cols=330  Identities=18%  Similarity=0.202  Sum_probs=189.3

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc------------------------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE------------------------   57 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~------------------------   57 (450)
                      ..++|+|+||||++|++..+.+. ..+.++||++|++|+|||||+|+|+.......                        
T Consensus        28 ~~~~v~I~~g~I~~vg~~~~~~~-~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~  106 (416)
T 2q09_A           28 EPHALGVHEGRIHALVPMQDLKG-PYPAHWQDMKGKLVTPGLIDCHTHLIFAGSRAEEFELRQKGVPYAEIARKGGGIIS  106 (416)
T ss_dssp             SSEEEEEETTEEEEEEEGGGCC---CCTTSEECTTCEEEECEEEEEECCCCCSCCHHHHHHHHTTCCHHHHHHTTCTHHH
T ss_pred             ccceEEEECCEEEEEcChhhccc-cCCCeEEeCCCCEECCcccccccCcchhhhhHHHHHHHHhcCCHHHhhhcCCcEee
Confidence            45789999999999997644321 12457999999999999999999997654310                        


Q ss_pred             ---------ccchH----HHHHHHHhCCceEEEeCCCCCC-CCCCcHHHHHHHHHHHhcCCceEEE--Eecc--ccCC-C
Q 013050           58 ---------WEGFP----SGTKAAAAGGITTLIDMPLNSD-PSTISTETLKLKVDAAEKRIYVDVG--FWGG--LVPE-N  118 (450)
Q Consensus        58 ---------~~~~~----~~~~~~~~~GvT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~-~  118 (450)
                               .+.+.    ...+.++++|||++.+++ ... +.......+....+.... ..+++.  ..+.  .... .
T Consensus       107 ~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~  184 (416)
T 2q09_A          107 TVRATRAASEDQLFELALPRVKSLIREGVTTVEIKS-GYGLTLEDELKMLRVARRLGEA-LPIRVKTTLLAAHAVPPEYR  184 (416)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHTEEEEEEEC-CSCCSHHHHHHHHHHHHHHHHH-SSSEEEEEEEEETSCCGGGT
T ss_pred             hhhhccCCCHHHHHHHHHHHHHHHHHcCCcEEEecc-CcccChHhHHHHHHHHHHHHhh-CCceEEEeeeccccCCcccc
Confidence                     01111    124678899999999974 211 100111122222222111 222222  1111  1110 0


Q ss_pred             c---cchHH-----HHHHHHcC-CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccC
Q 013050          119 A---YNASA-----LEALLNAG-VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD  189 (450)
Q Consensus       119 ~---~~~~~-----~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~  189 (450)
                      .   ...+.     +..+...+ +..++.+.      +.+..+.+.+.++++.|+++|+++.+|+.....          
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~----------  248 (416)
T 2q09_A          185 DDPDSWVETICQEIIPAAAEAGLADAVDVFC------EHIGFSLAQTEQVYLAADQYGLAVKGHMDQLSN----------  248 (416)
T ss_dssp             TCHHHHHHHHHHTHHHHHHHTTCCSEEEEBB------STTSBCHHHHHHHHHHHHHTTCEEEEEESSSCC----------
T ss_pred             CCHHHHHHHHHhhhhHHHHhccccccccccc------CCCcCCHHHHHHHHHHHHHCCCcEEEEECCCCc----------
Confidence            0   11111     11222233 33333321      113568899999999999999999999953210          


Q ss_pred             cCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcc
Q 013050          190 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF  269 (450)
Q Consensus       190 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~  269 (450)
                                   .      ..++.    +.+.       +. ..+.|+...  ..+.++.+++.|+.+  ..+|.....
T Consensus       249 -------------~------~~~~~----~~~~-------g~-~~~~H~~~~--~~~~~~~~~~~g~~~--~~~p~~~~~  293 (416)
T 2q09_A          249 -------------L------GGSTL----AANF-------GA-LSVDHLEYL--DPEGIQALAHRGVVA--TLLPTAFYF  293 (416)
T ss_dssp             -------------C------SHHHH----HHHT-------TC-SEEEECTTC--CHHHHHHHHHHTCEE--EECHHHHHH
T ss_pred             -------------h------HHHHH----HHHc-------CC-CEEeecccC--CHHHHHHHHHcCCeE--EEcCccHHh
Confidence                         0      01111    1221       22 224555542  224556666666544  447754322


Q ss_pred             cccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH
Q 013050          270 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR  349 (450)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  349 (450)
                      ..      +   ...+         .+..+++.|+.+++|||+.+....                  ....+..+.....
T Consensus       294 ~~------~---~~~~---------~~~~~~~~Gv~~~~gtD~~~~~~~------------------~~~~~~~~~~~~~  337 (416)
T 2q09_A          294 LK------E---TKLP---------PVVALRKAGVPMAVSSDINPGTAP------------------IVSLRMAMNMACT  337 (416)
T ss_dssp             TT------C---CCCC---------CHHHHHHTTCCEEECCCCBTTTBC------------------CCCHHHHHHHHHH
T ss_pred             hc------c---cccc---------CHHHHHHCCCeEEEecCCCCccCC------------------CCCHHHHHHHHHH
Confidence            10      0   0011         245678899999999997542100                  0011222222234


Q ss_pred             hcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEEC
Q 013050          350 KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISR  428 (450)
Q Consensus       350 ~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~  428 (450)
                      ..++|++++++++|.|||+++|+ +++|+|++||.|||||+|.++...+              ++..  ...+|..||++
T Consensus       338 ~~~l~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~--------------~~~~--~~~~v~~v~v~  401 (416)
T 2q09_A          338 LFGLTPVEAMAGVTRHAARALGEQEQLGQLRVGMLADFLVWNCGHPAEL--------------SYLI--GVDQLVSRVVN  401 (416)
T ss_dssp             HHCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSSCTTHH--------------HHSC--SCCCEEEEEET
T ss_pred             HcCCCHHHHHHHHHHHHHHHhCCCccceecCCCCCccEEEECCCchhhh--------------hhhh--ccCcceEEEEC
Confidence            67899999999999999999999 6689999999999999998753211              1111  12479999999


Q ss_pred             CeEEEecCc
Q 013050          429 GNLVYKEGN  437 (450)
Q Consensus       429 G~~v~~~g~  437 (450)
                      |++||+++-
T Consensus       402 G~~v~~~~~  410 (416)
T 2q09_A          402 GEETLHGEG  410 (416)
T ss_dssp             TEECCC---
T ss_pred             CEEEEeCCC
Confidence            999998764

>2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9

Probab=99.98  E-value=6e-31  Score=257.51  Aligned_cols=351  Identities=15%  Similarity=0.104  Sum_probs=193.3

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCC---C------cc--------------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR---T------EW--------------   58 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~---~------~~--------------   58 (450)
                      .+++|+|+||||++|++....+  +++.++||++|++|+|||||+|+|+.....   .      .|              
T Consensus        30 ~~~~v~I~~g~I~~ig~~~~~~--~~~~~viD~~G~~v~PGlID~H~H~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~  107 (439)
T 2i9u_A           30 KDSYIVVIDGKIASVSSNLPDK--YKGNPIIDFRNNIIIPGMNDLHAHASQYKNLGIGMDKELLPWLNNYTFPEEAKFLN  107 (439)
T ss_dssp             EEEEEEEETTEEEEEESSCCGG--GTTSCEEEEEEEEEEECEEEEEEEGGGGGGTTCCCSSCHHHHHHHTHHHHHHGGGS
T ss_pred             eccEEEEECCEEEEeccccccc--CCCceEEcCCCeEEEecceecccccchHhhhCCcCCCCHHHHHHhcccchhhccCC
Confidence            3678999999999999643211  135689999999999999999999975311   0      00              


Q ss_pred             -cchHH----HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc-CCceEE--EEeccccC-C---C-ccchHHH
Q 013050           59 -EGFPS----GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDV--GFWGGLVP-E---N-AYNASAL  125 (450)
Q Consensus        59 -~~~~~----~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~-~---~-~~~~~~~  125 (450)
                       +.+..    ..+.++++|||++++++ +.     ..+......+.... ......  .......+ .   . ....+..
T Consensus       108 ~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~-----~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~p~~~~~~~~~~~~~~  181 (439)
T 2i9u_A          108 VDYAKKTYGRLIKDLIKNGTTRVALFA-TL-----HKDSTIELFNMLIKSGIGAYVGKVNMDYNCPDYLTENYITSLNDT  181 (439)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEEEEEEEC-CS-----CHHHHHHHHHHHHHHTCEEEEECEECCSSCCTTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCceEEEEcc-cc-----ccchHHHHHHHHHHcCCEEEEEeeeccccCCcccchhHHHHHHHH
Confidence             01111    13578999999999985 22     22222222222221 111111  11110001 0   0 0122233


Q ss_pred             HHHHH---cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCh-hhhhhhhhhccCcCCccccccccC
Q 013050          126 EALLN---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLK  201 (450)
Q Consensus       126 ~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  201 (450)
                      .++++   .+...++.+..+.   ..+.++.+.++++++.|+++|+++.+|+.+. ......+...+             
T Consensus       182 ~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~-------------  245 (439)
T 2i9u_A          182 EEIILKYKDKSNIVKPIITPR---FVPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVKSLHK-------------  245 (439)
T ss_dssp             HHHHHHHTTTCSSEEECBEEC---CGGGCCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHCT-------------
T ss_pred             HHHHHHHhCCCCceEEEEecC---CcCcCCHHHHHHHHHHHHhcCCcEEEeecCChHHHHHHHHHhC-------------
Confidence            33333   2222334433321   1135688999999999999999999999643 22111111100             


Q ss_pred             CCChHHHHHHHHHHHHHHHhhccCCCCCC-ceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCc
Q 013050          202 TRPPSWEEAAIRELLTVAKDTRTDGPAEG-AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR  280 (450)
Q Consensus       202 ~~p~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~  280 (450)
                      ..|.         .++.+.+.   + ..+ .+..+.|+...  +.+.++.+++.|+.  +.+||......       +  
T Consensus       246 ~~~~---------~~~~~~~~---g-~~~~~~~~i~H~~~~--~~~~~~~l~~~g~~--~~~~p~~~~~l-------~--  299 (439)
T 2i9u_A          246 KSNF---------YGEVYDKF---G-LFGNTPTLMAHCIHS--SKEEINLIKRNNVT--IVHCPTSNFNL-------G--  299 (439)
T ss_dssp             TCSS---------HHHHHHHT---T-CSSSSCEEEEECCSC--CHHHHHHHHHTTCE--EEECHHHHHHT-------T--
T ss_pred             CCCC---------HHHHHHHc---C-CCCCCCeEEEEEecC--CHHHHHHHHHcCCE--EEECccchhhc-------c--
Confidence            0000         11122221   0 112 34556666542  12356666667754  44477543211       0  


Q ss_pred             eEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-------hcCC
Q 013050          281 FKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-------KYGV  353 (450)
Q Consensus       281 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~gl  353 (450)
                       ...+         .++.+++.|+.++++||+.+.. ...++              .+..+...++...       ..++
T Consensus       300 -~~~~---------~~~~~~~~Gv~~~lgtD~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l  354 (439)
T 2i9u_A          300 -SGMM---------PVRKYLNLGINVVLGSDISAGH-TCSLF--------------KVIAYAIQNSKIKWQESGKKDMFL  354 (439)
T ss_dssp             -CCCC---------CHHHHHHTTCEEEECCCBTTBC-CSCHH--------------HHHHHHHHHHHHHHHHTTSCSCCC
T ss_pred             -cccC---------CHHHHHHCCCcEEEecCCCCCC-CcCHH--------------HHHHHHHHHhccccccccCCCCCC
Confidence             0011         2346688999999999975421 00000              0011111111111       3689


Q ss_pred             CHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEe---eEEEEEEECCe
Q 013050          354 TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS---GKVLATISRGN  430 (450)
Q Consensus       354 s~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~v~G~  430 (450)
                      |++++++++|.|||+++|  ++|+|+|||.|||||+|.++.+.. ..      .. ++|+.+..+.   .+|..||++|+
T Consensus       355 s~~~al~~~T~~~A~~lg--~~Gsl~~G~~ADlvvld~~~~~~~-~~------~~-~~~~~~~~~~~~~~~v~~v~v~G~  424 (439)
T 2i9u_A          355 STSEAFYMATKKGGSFFG--KVGSFEEGYDFDALVINDSNLYPE-DY------DL-TERLERFIYLGDDRNIMKRYVCGN  424 (439)
T ss_dssp             CHHHHHHHHTHHHHTTTS--SCSSCSTTCBCCEEEECCTTSCGG-GS------CH-HHHHHHHHHHCCGGGEEEEEETTE
T ss_pred             CHHHHHHHHHHHHHHHhc--cCCccCCCCccCEEEEeCCCcccc-CC------Cc-cCHHHHheecCCCCCeeEEEECCE
Confidence            999999999999999999  699999999999999998864432 10      11 3333333222   37999999999


Q ss_pred             EEEecCc
Q 013050          431 LVYKEGN  437 (450)
Q Consensus       431 ~v~~~g~  437 (450)
                      +||++++
T Consensus       425 ~v~~~~~  431 (439)
T 2i9u_A          425 EIFGPKF  431 (439)
T ss_dssp             EEC----
T ss_pred             EEeeCCC
Confidence            9998764

>4ac7_C Urease subunit alpha; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 4ubp_C* 1ie7_C*

Probab=99.98  E-value=1.1e-31  Score=262.46  Aligned_cols=334  Identities=21%  Similarity=0.249  Sum_probs=209.2

Q ss_pred             cceeEEEeCCEEEEeccCCCCC---------CCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWP---------RNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG   72 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~---------~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~G   72 (450)
                      ++++|+|+||||++|++..+..         ...++.++||++|++|+|||||+|+|+..++.         .+.++++|
T Consensus        83 ~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH~~~Pg~---------~~aAl~gG  153 (570)
T 4ac7_C           83 YKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINPDQ---------VDVALANG  153 (570)
T ss_dssp             EEEEEEEETTEEEEEECCBCTTTCSSCCTTCBCCTTCEEEECTTCEEEECEEEEEEECCCTTH---------HHHHHHTT
T ss_pred             EEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEEeeCEEecccccCCcch---------HHHHHhcC
Confidence            4689999999999999864321         01246789999999999999999999977652         36789999


Q ss_pred             ceEEEeCCC------CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCC
Q 013050           73 ITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN  146 (450)
Q Consensus        73 vT~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  146 (450)
                      |||+++.+.      +..+.......+....+... ...+++.+++...   ....+.+.++.+.|+.+++.+..+    
T Consensus       154 vTTvv~gg~~p~~~~n~~p~~~~~~~l~~~l~aa~-~~~v~~~~~g~~~---~~~l~el~el~~aGa~gfK~~~~~----  225 (570)
T 4ac7_C          154 ITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTE-GLPINVGILGKGH---GSSIAPIMEQIDAGAAGLKIHEDW----  225 (570)
T ss_dssp             EEEEEEECSSSCHHHHHSSCCCHHHHHHHHHHHHT-TCSSEEEEEEECC---CSSHHHHHHHHHHTCCEEEEEGGG----
T ss_pred             CeEEEecCcCcccccCCcCcCCcHHHHHHHHHHhh-hCCeeEEEEeccC---CcCHHHHHHHHHcCCCeEeeccCC----
Confidence            999995321      22334455556666655554 4578988887543   234678889999999999998644    


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050          147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG  226 (450)
Q Consensus       147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~  226 (450)
                         ..+.+.+.++++.|+++|+++.+|+++...                             ...+...++...      
T Consensus       226 ---~~~~~~L~~aL~~A~~~g~~V~iHae~l~e-----------------------------~g~Vedalea~~------  267 (570)
T 4ac7_C          226 ---GATPASIDRSLTVADEADVQVAIHSDTLNE-----------------------------AGFLEDTLRAIN------  267 (570)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCEEEEECCTTCS-----------------------------SCCHHHHHHHHT------
T ss_pred             ---CCCHHHHHHHHHHHHHcCCEEEEEcCCcch-----------------------------hhHHHHHHHHhC------
Confidence               368899999999999999999999974321                             001233333333      


Q ss_pred             CCCCceEEEEecCChh--HHHHHHHHHHhCCCcEEEec-CcchhcccccccCCC----CCceEEcCCC---------C-C
Q 013050          227 PAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVET-CPHYLAFSAEEIPDG----DTRFKCAPPI---------R-D  289 (450)
Q Consensus       227 ~~~~~~~~~~h~~~~~--~~~~~~~~~~~~g~~v~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~---------~-~  289 (450)
                         +..+|..|.....  ...+.++.+...+  +.... .|. .......+..+    -.+.+..+.+         + .
T Consensus       268 ---Gr~ih~~HiEgag~~hapd~i~~~~~~~--vlps~t~Pt-~p~~~n~~~e~ld~l~v~hhl~~~i~~D~~~a~~Rir  341 (570)
T 4ac7_C          268 ---GRVIHSFHVEGAGGGHAPDIMAMAGHPN--VLPSSTNPT-RPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIR  341 (570)
T ss_dssp             ---TCCEEETTTTSTTSSSTTTGGGGGGSTT--EEEBCCGGG-SSCBTTHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSC
T ss_pred             ---CCcceeEeeeccccccChHHHHHhccCC--ccccccCCC-CCcccchhHHhhhheeeecccCccccchhHHHHhhhh
Confidence               5667766665320  1234444444433  33221 111 00000000000    0001111111         0 1


Q ss_pred             hhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-H----------HhcCCCHHHH
Q 013050          290 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-G----------RKYGVTLEQL  358 (450)
Q Consensus       290 ~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~----------~~~gls~~~a  358 (450)
                      .....+...+++.|+.++++||+......              |.. ....+...... .          .+.+++++++
T Consensus       342 ~~~i~a~~~L~d~G~~v~~gSD~p~~~~~--------------ge~-~~~~~~~a~~~~~~rg~l~~~~~~~~~~~~~ea  406 (570)
T 4ac7_C          342 PETIAAEDILHDLGIISMMSTDALAMGRA--------------GEM-VLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRY  406 (570)
T ss_dssp             HHHHHHHHHHHHTTSSCBCCCCBTTSSCT--------------TCH-HHHHHHHHHHHHHHHCSCTTCCTTCCHHHHHHH
T ss_pred             hhhcccccchhhcCCEEEEECcccccCCc--------------Ccc-cCcHHHHHHHHHHhcCCCCCccccccCCCHHHH
Confidence            11223345577789999999996432110              000 00000000000 0          1234789999


Q ss_pred             HHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050          359 ASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE  435 (450)
Q Consensus       359 l~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~  435 (450)
                      |+++|.|||+++|+ +++|+|++||.||||+||.++.                   .     .+|..||++|++||+.
T Consensus       407 l~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~~-------------------~-----~~v~~t~~~G~~v~~~  460 (570)
T 4ac7_C          407 VSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFF-------------------G-----VKADRVIKGGIIAYAQ  460 (570)
T ss_dssp             HHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGGT-------------------T-----TSCSEEEETTEEEEEE
T ss_pred             HHHHhHHHHHHhCCCCCCcccCCCCccCEEEECchhc-------------------c-----CceEEEEECCEEEEcc
Confidence            99999999999999 6789999999999999996531                   0     1567999999999984

>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A

Probab=99.97  E-value=3.4e-32  Score=263.64  Aligned_cols=333  Identities=17%  Similarity=0.131  Sum_probs=186.8

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC-----------------------cc
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT-----------------------EW   58 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~-----------------------~~   58 (450)
                      .+++|+|+||||++|++..      ++.+ ||++|++|+|||||+|+|+......                       ..
T Consensus        17 ~~~~v~I~~g~I~~vg~~~------~~~~-iD~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (406)
T 1p1m_A           17 FWGAVEIENGTIKRVLQGE------VKVD-LDLSGKLVMPALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTE   89 (406)
T ss_dssp             EEEEEEEETTEEEEEEESS------CCCS-EECTTEEEEECEEEEEECGGGGGGTTSSCSCCHHHHHHTTHHHHHTTCCH
T ss_pred             ccceEEEECCEEEEeeCCC------Ccce-ecCCCcEEeecccchhhccchhhhccccCCCCHHHHHHhhhccchhcCCH
Confidence            4579999999999999753      2456 9999999999999999999653210                       01


Q ss_pred             cchHH----HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccC---CCccchHHHHHHHH-
Q 013050           59 EGFPS----GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP---ENAYNASALEALLN-  130 (450)
Q Consensus        59 ~~~~~----~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-  130 (450)
                      +.+..    ..+.++++|||++++++ .      ....+....+..    .++.........   ...+.++...++++ 
T Consensus        90 ~~~~~~~~~~~~~~l~~GvTtv~d~~-~------~~~~~~~~~~~~----g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (406)
T 1p1m_A           90 KMAYYGTILAQMEMARHGIAGFVDMY-F------HEEWIAKAVRDF----GMRALLTRGLVDSNGDDGGRLEENLKLYNE  158 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTTEEEEEEEE-S------SHHHHHHHHHHH----CCEEEEEEEECCBTTBCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcEEEEech-h------CHHHHHHHHHHc----CCEEEEEcccccCCCCHHHHHHHHHHHHHH
Confidence            11222    23567899999999986 2      122222222221    122221111111   12222332222322 


Q ss_pred             -cCC-cEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC-hhhhhhhhhhccCcCCccccccccCCCChHH
Q 013050          131 -AGV-LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPSW  207 (450)
Q Consensus       131 -~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  207 (450)
                       .+. ..++....+.   .....+.+.+.++++.|+++|+++.+|+.. ...+...+                       
T Consensus       159 ~~~~~~~i~~~~~~~---~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~-----------------------  212 (406)
T 1p1m_A          159 WNGFEGRIFVGFGPH---SPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSKEEYDLE-----------------------  212 (406)
T ss_dssp             HTTGGGTEEEEEEEC---CTTTSCHHHHHHHHHHHHHTTCCEEEEESCSTTCCCCTH-----------------------
T ss_pred             hhCCCCcEEEEEecC---ccCcCCHHHHHHHHHHHHHCCCcEEEEcCCCchHHHHHH-----------------------
Confidence             121 1233322221   112468899999999999999999999953 22111000                       


Q ss_pred             HHHHHHHHHHH-HHhhccCCCCCCce-EEEEecC---ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceE
Q 013050          208 EEAAIRELLTV-AKDTRTDGPAEGAH-LHIVHLS---DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFK  282 (450)
Q Consensus       208 ~~~~~~~~~~l-~~~~~~~~~~~~~~-~~~~h~~---~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~  282 (450)
                            +.+.. .++.       +.. ..+.|+.   .. . .+.++.+        ...+|......            
T Consensus       213 ------~~~~~g~~~~-------g~~~~~~~H~~~~~~~-~-~~~~~~~--------~~~~p~~~~~~------------  257 (406)
T 1p1m_A          213 ------DILNIGLKEV-------KTIAAHCVHLPERYFG-V-LKDIPFF--------VSHNPASNLKL------------  257 (406)
T ss_dssp             ------HHHTTTTTTS-------CEEEEECTTCCGGGTT-T-TTTSSEE--------EEECHHHHHHT------------
T ss_pred             ------HhhhCCHhHc-------CcceeEeeeccCcccC-C-HHHHHHH--------HHhCcHHHhhc------------
Confidence                  00000 1110       211 2334433   21 0 0011111        12244211100            


Q ss_pred             EcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHH
Q 013050          283 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASW  361 (450)
Q Consensus       283 ~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~  361 (450)
                       .+      ....++++++.|+.+++|||+.+.+...+++              .+..+...+.... ..++|+++++++
T Consensus       258 -~~------~~~~~~~~~~~Gv~~~lgtD~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ls~~~al~~  316 (406)
T 1p1m_A          258 -GN------GIAPVQRMIEHGMKVTLGTDGAASNNSLNLF--------------FEMRLASLLQKAQNPRNLDVNTCLKM  316 (406)
T ss_dssp             -TC------CCCCHHHHHHTTCEEEECCCCTTTTSCCCHH--------------HHHHHHHHHHHTTCTTSSCHHHHHHH
T ss_pred             -CC------CcCcHHHHHhCCCeEEEECCCCcCCCCCCHH--------------HHHHHHHHHhcccCCCCCCHHHHHHH
Confidence             00      1123577888999999999987643211110              0111222222111 568999999999


Q ss_pred             HhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECCeEEEecCcc
Q 013050          362 WSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKEGNH  438 (450)
Q Consensus       362 aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~v~~~g~~  438 (450)
                      +|.|||+++|+++ |+|+|||.|||||+|.++++..+..          +|+.+..+   ..+|..||++|++|| +|++
T Consensus       317 ~T~~~A~~lgl~~-G~l~~G~~ADlvv~d~~~~~~~~~~----------~~~~~~~~~~~~~~v~~v~v~G~~v~-~g~~  384 (406)
T 1p1m_A          317 VTYDGAQAMGFKS-GKIEEGWNADLVVIDLDLPEMFPVQ----------NIKNHLVHAFSGEVFATMVAGKWIYF-DGEY  384 (406)
T ss_dssp             HTHHHHHHHTCSC-SSCCTTSBCCEEEEECCSGGGCSGG----------GHHHHHHHTCCSCCSEEEETTEEEEE-TTBC
T ss_pred             HHHHHHHHhCCCC-cccCCCCcccEEEEeCCccccCCcc----------ChHHHheEecCCCCceEEEECCEEEE-CCee
Confidence            9999999999965 9999999999999998875443222          11111111   257899999999999 9999


Q ss_pred             cCCCCCcc
Q 013050          439 APAACGSP  446 (450)
Q Consensus       439 ~~~~~g~~  446 (450)
                      +..+.++.
T Consensus       385 ~~~d~~~~  392 (406)
T 1p1m_A          385 PTIDSEEV  392 (406)
T ss_dssp             TTSCHHHH
T ss_pred             CCCCHHHH
Confidence            87665443

>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A

Probab=99.97  E-value=2.4e-30  Score=259.86  Aligned_cols=313  Identities=21%  Similarity=0.193  Sum_probs=206.1

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL   81 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~   81 (450)
                      ..++|+|+||||++|++....   ..+.++||++|++|+|||||+|+|+..+..    +.....+.++.+|||++++++ 
T Consensus        53 ~~~dI~I~~G~I~~Vg~~~~~---~~~~~vID~~G~~v~PG~ID~H~Hl~~~~~----~~~~~~~~al~~GvTtvv~~p-  124 (608)
T 3nqb_A           53 RPADIGIVGALIASVHEPASR---RDAAQVIDAGGAYVSPGLIDTHMHIESSMI----TPAAYAAAVVARGVTTIVWDP-  124 (608)
T ss_dssp             EECEEEEETTEEEEEECTTSC---CCEEEEEECTTSEEEECEEEEEECGGGGTS----CHHHHHHHHHTTTEEEEEECC-
T ss_pred             EeeEEEEECCEEEEecCCCCC---CCCCeEEeCCCCEEecCeEecccCcccccC----CHHHHHHHHHhCCeEEEEcCC-
Confidence            357999999999999985421   246789999999999999999999975432    355667889999999999876 


Q ss_pred             CCCCCCCcHHHHHHHHHHHhcCCceEEEEec-cccCC--------CccchHHHHHHHH-cCCcEEEEecccCCCCCCCCC
Q 013050           82 NSDPSTISTETLKLKVDAAEKRIYVDVGFWG-GLVPE--------NAYNASALEALLN-AGVLGLKSFMCPSGINDFPMT  151 (450)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~  151 (450)
                      +..+.....+.+....+.... ...++..+. ...+.        .....+.+.++.+ .++.+++.++.+++.    ..
T Consensus       125 ~~~~~v~g~~~~~~~l~~a~~-~~~~v~~~~p~~~P~~~~~~~~g~~~~~~el~~l~~~~~v~glgE~~~~~~v----~~  199 (608)
T 3nqb_A          125 HEFGNVHGVDGVRWAAKAIEN-LPLRAILLAPSCVPSAPGLERGGADFDAAILADLLSWPEIGGIAEIMNMRGV----IE  199 (608)
T ss_dssp             HHHHHHHTHHHHHHHHHHHTT-CSSEEEEEECCCSSSSTTSCCCSCCCCHHHHHHHHTSTTEEEEEEECCHHHH----HT
T ss_pred             ccccccCCHHHHHHHHHHhhh-cCcEEEEeccccCCCCCccccCcccCCHHHHHHHHhccCcceeeEeeccCCc----CC
Confidence            332222334445554444433 345555443 22221        1124567777776 688888887644321    24


Q ss_pred             CHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCc
Q 013050          152 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA  231 (450)
Q Consensus       152 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~  231 (450)
                      ..+.+.+.++.|++.|++|.+|++....                                  ..+......       +.
T Consensus       200 ~d~~l~~~l~~A~~~g~pV~~Ha~~~~~----------------------------------~~L~~~~~a-------Gv  238 (608)
T 3nqb_A          200 RDPRMSGIVQAGLAAEKLVCGHARGLKN----------------------------------ADLNAFMAA-------GV  238 (608)
T ss_dssp             TCHHHHHHHHHHHHHTCEEEECCTTCCH----------------------------------HHHHHHHHT-------TC
T ss_pred             CcHHHHHHHHHHHHcCCEEEEcCCCCCH----------------------------------HHHHHHHHc-------CC
Confidence            5678899999999999999999964321                                  112222222       44


Q ss_pred             eEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHH----hcCCeeE
Q 013050          232 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEAL----MDGHIDM  307 (450)
Q Consensus       232 ~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~g~~~~  307 (450)
                      ..  .|+...  ..+.++.+ +.|..+... ..                        .......+...+    ..+..++
T Consensus       239 ~~--~H~~~~--~eea~e~l-~~G~~i~i~-gs------------------------~~~~~~~l~~~i~~~~~~g~~v~  288 (608)
T 3nqb_A          239 SS--DHELVS--GEDLMAKL-RAGLTIELR-GS------------------------HDHLLPEFVAALNTLGHLPQTVT  288 (608)
T ss_dssp             CE--ECCCCS--HHHHHHHH-HTTCEEEEE-SS------------------------SGGGHHHHHHHHHHHTSCCTTEE
T ss_pred             Ce--eeccCC--HHHHHHHH-HCCCEEEEe-cc------------------------ccccHHHHHHHHHhHhhcCceEE
Confidence            33  676653  23333333 456544432 00                        011122233333    3689999


Q ss_pred             EcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEE
Q 013050          308 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLV  387 (450)
Q Consensus       308 ~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlv  387 (450)
                      ++||..+.....   ..              ..+...++.+.+.|++++++++++|.|||++||+++.|+|+||++||||
T Consensus       289 lgTD~~~p~~~~---~~--------------g~l~~~v~~~~~~Gls~~eal~~aT~n~A~~lgl~~~G~i~~G~~ADlv  351 (608)
T 3nqb_A          289 LCTDDVFPDDLL---QG--------------GGLDDVVRRLVRYGLKPEWALRAATLNAAQRLGRSDLGLIAAGRRADIV  351 (608)
T ss_dssp             EECBSCCHHHHH---HT--------------CSHHHHHHHHHHTTCCHHHHHHHHTHHHHHHHTCTTSSCCSTTSBCCEE
T ss_pred             EecCCCCCcchh---hh--------------cchHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCcCcCCCCCccEE
Confidence            999964211111   00              1134445555667999999999999999999999668999999999999


Q ss_pred             EEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccC
Q 013050          388 VWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP  440 (450)
Q Consensus       388 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~  440 (450)
                      ++|.-.        +                 .+|..||++|++|+++|+++.
T Consensus       352 v~d~l~--------~-----------------~~v~~v~~~G~~v~~~g~~~~  379 (608)
T 3nqb_A          352 VFEDLN--------G-----------------FSARHVLASGRAVAEGGRMLV  379 (608)
T ss_dssp             EESCTT--------T-----------------CCEEEEEETTEEEEETTEECS
T ss_pred             EECCCC--------C-----------------CcceEEEECCEEEEECCeEec
Confidence            999310        0                 268999999999999999873

>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C*

Probab=99.97  E-value=1.7e-31  Score=261.16  Aligned_cols=334  Identities=21%  Similarity=0.249  Sum_probs=208.9

Q ss_pred             cceeEEEeCCEEEEeccCCCCC---------CCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWP---------RNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG   72 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~---------~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~G   72 (450)
                      ++++|+|+||||++|++..+..         ...++.++||++|++|+|||||+|+|+..++.         .+.++++|
T Consensus        83 ~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH~~~Pg~---------~~aAl~gG  153 (570)
T 4ubp_C           83 YKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINPDQ---------VDVALANG  153 (570)
T ss_dssp             EEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEECEEEEEEECCCTTH---------HHHHHHTT
T ss_pred             EEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEEeeCEEEcccCCCCcch---------HHHHHhcC
Confidence            4689999999999999864321         01246789999999999999999999977652         36789999


Q ss_pred             ceEEEeCCC------CCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCC
Q 013050           73 ITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN  146 (450)
Q Consensus        73 vT~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  146 (450)
                      |||+++.+.      +..+.......+....+... ...+++.+++...   ....+.+.++.+.|+.+++.+..+    
T Consensus       154 vTTvv~gg~~p~~~~n~~p~~~~~~~l~~~l~aa~-~~~v~~~~~g~~~---~~~l~el~el~~aGa~gfK~~~~~----  225 (570)
T 4ubp_C          154 ITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTE-GLPINVGILGKGH---GSSIAPIMEQIDAGAAGLKIHEDW----  225 (570)
T ss_dssp             EEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHT-TCSSEEEEEEECC---CSSHHHHHHHHHHTCCEEEEEGGG----
T ss_pred             CeEEEecCccccccCCCcCCCCcHHHHHHHHHHhh-hCCeeEEEEeccC---CcCHHHHHHHHHcCCCeEeeccCC----
Confidence            999995321      22334455556666655554 4578988887543   234678889999999999998644    


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050          147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG  226 (450)
Q Consensus       147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~  226 (450)
                         ..+.+.+.++++.|+++|+++.+|+++...                             ...+...++...      
T Consensus       226 ---~~~~~~L~~aL~~A~~~g~~V~iHae~l~e-----------------------------~g~Vedalea~~------  267 (570)
T 4ubp_C          226 ---GATPASIDRSLTVADEADVQVAIHSDTLNE-----------------------------AGFLEDTLRAIN------  267 (570)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCEEEEECCTTCS-----------------------------SCCHHHHHHHHT------
T ss_pred             ---CCCHHHHHHHHHHHHHcCCEEEEEcCCcch-----------------------------hhHHHHHHHHhC------
Confidence               368899999999999999999999974321                             001233333333      


Q ss_pred             CCCCceEEEEecCChh--HHHHHHHHHHhCCCcEEEec-CcchhcccccccCCC----CCceEEcCCC---------C-C
Q 013050          227 PAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVET-CPHYLAFSAEEIPDG----DTRFKCAPPI---------R-D  289 (450)
Q Consensus       227 ~~~~~~~~~~h~~~~~--~~~~~~~~~~~~g~~v~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~---------~-~  289 (450)
                         +..+|..|.....  ...+.++.+...+  +.... .|. .......+..+    -.+.+..+.+         + .
T Consensus       268 ---Gr~ih~~HiEgag~~hapd~i~~~~~~~--vlps~t~Pt-~p~~~n~~~e~ld~l~v~hhl~~~i~~D~~~a~~Rir  341 (570)
T 4ubp_C          268 ---GRVIHSFHVEGAGGGHAPDIMAMAGHPN--VLPSSTNPT-RPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIR  341 (570)
T ss_dssp             ---TCCEEETTTTSTTSSSTTTGGGGGGSTT--EEEBCCSTT-SSCBTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHSC
T ss_pred             ---CCceeEEEecccccccChHHHHHhccCC--ccccccCCC-CCcccchhHHhhhheeeecccCccccchhHHHHhhhh
Confidence               5667766665320  1134444444433  33221 111 00000000000    0001111111         0 1


Q ss_pred             hhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-H----------HhcCCCHHHH
Q 013050          290 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-G----------RKYGVTLEQL  358 (450)
Q Consensus       290 ~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~----------~~~gls~~~a  358 (450)
                      .....+...+++.|+.++++||+......              |.. ....+...... .          .+.+++++++
T Consensus       342 ~~~i~a~~~L~d~G~~v~~gSD~p~~~~~--------------ge~-~~~~~~~a~~~~~~rg~l~~~~~~~~~~~~~ea  406 (570)
T 4ubp_C          342 PETIAAEDILHDLGIISMMSTDALAMGRA--------------GEM-VLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRY  406 (570)
T ss_dssp             HHHHHHHHHHHHTTSSCBCCCCBTTSSCT--------------TCH-HHHHHHHHHHHHHHHCSCTTCCSSCCHHHHHHH
T ss_pred             hhccccccchhhcCCEEEEECcccccCCc--------------Ccc-cCcHHHHHHHHHHhcCCCCCccccccCCCHHHH
Confidence            11223345577789999999996432110              000 00000000000 0          1234789999


Q ss_pred             HHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050          359 ASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE  435 (450)
Q Consensus       359 l~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~  435 (450)
                      |+++|.|||+++|+ +++|+|++||.||||+||.++.                   .     .+|..||++|++||+.
T Consensus       407 l~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~~-------------------~-----~~v~~t~~~G~~v~~~  460 (570)
T 4ubp_C          407 VSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFF-------------------G-----VKADRVIKGGIIAYAQ  460 (570)
T ss_dssp             HHTTTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGGT-------------------T-----TSCSEEEETTEEEEEE
T ss_pred             HHHHhHHHHHHhCCCCCCcccCCCCccCEEEECcccc-------------------c-----CCeeEEEECCEEEEec
Confidence            99999999999999 6789999999999999996531                   0     1567999999999984

>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18

Probab=99.97  E-value=1.6e-30  Score=252.81  Aligned_cols=330  Identities=17%  Similarity=0.142  Sum_probs=195.9

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCC--cEEecCCCEEeccceeeccccCCCCC-Cccc----ch-------HHHHHHH
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTG--QVVDYGEAVIMPGLIDVHAHLDDPGR-TEWE----GF-------PSGTKAA   68 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~--~viD~~g~~v~PG~iD~H~H~~~~~~-~~~~----~~-------~~~~~~~   68 (450)
                      +++|+|+||||++|++.. .+   ++.  ++||++|++|+|||||+|+|+..... ..|+    ..       ....+.+
T Consensus        27 ~~~v~I~~g~I~~vg~~~-~~---~~~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (418)
T 2qs8_A           27 RISIVIDGNIISDIKKGF-IS---SNDFEDYIDLRDHTVLPGLMDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYVT  102 (418)
T ss_dssp             EEEEEEETTEEEEEEESC-CC---CTTSSEEEEEEEEEEEECEEEEEECTTCCCCCTTTSCSCCCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCEEEEEeCCC-CC---CCCcceEEECCCCEECCCeeeeeeccccCCCCCchhhhcCCHHHHHHHHHHHHHHH
Confidence            479999999999999754 11   356  89999999999999999999976531 1111    11       1256788


Q ss_pred             HhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEec-------cccC----------C-------CccchH-
Q 013050           69 AAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG-------GLVP----------E-------NAYNAS-  123 (450)
Q Consensus        69 ~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----------~-------~~~~~~-  123 (450)
                      +++|||++++++ ...+   ....+....+.. .....++...+       ....          .       .....+ 
T Consensus       103 l~~GvTtv~d~~-~~~~---~~~~~~~~~~~g-~~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (418)
T 2qs8_A          103 FKSGFTTVRQVG-DSGL---VAISLRDAINSG-KLAGPRIFAAGKTIATTGGHADPTNGKAVDDYDYPVPEQGVVNGPYE  177 (418)
T ss_dssp             HHTTEEEEEECC-CSSS---HHHHHHHHHHTT-SSCCCEEEECCSCBEETTCTTCTTTTCCGGGCCCCCGGGTEECSHHH
T ss_pred             HHcCCCEEEeCC-CCcc---ccHHHHHHHHCC-CCCCCeEEecCccccccCCCccccccccccccccccccccccCCHHH
Confidence            999999999985 2211   111222221111 10111222111       0000          0       011122 


Q ss_pred             ---HHHHHHHcCCcEEEEecccC-----CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050          124 ---ALEALLNAGVLGLKSFMCPS-----GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS  195 (450)
Q Consensus       124 ---~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~  195 (450)
                         .+++..+.|...+|.+....     ...+.+..+.+.++++++.|+++|+++.+|+....                 
T Consensus       178 ~~~~~~~~~~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~-----------------  240 (418)
T 2qs8_A          178 VYAAVRQRYKDGADGIKITVTGGVLSVAKSGQNPQFTQEEVDAVVSAAKDYGMWVAVHAHGAE-----------------  240 (418)
T ss_dssp             HHHHHHHHHHHTCSEEEEECBCCSSSSSSCSSCBCSCHHHHHHHHHHHHHTTCEEEEEECSHH-----------------
T ss_pred             HHHHHHHHHHcCCCEEEEEecCCCCCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEECCHH-----------------
Confidence               33334556888888875321     11123567899999999999999999999995432                 


Q ss_pred             cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050          196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP  275 (450)
Q Consensus       196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~  275 (450)
                                     .+..+++.           +. ..+.|+..  -..+.++.+++.|+.+    +|.......  +.
T Consensus       241 ---------------~i~~~~~~-----------g~-~~i~H~~~--~~~~~i~~l~~~gv~v----~p~~~~~~~--~~  285 (418)
T 2qs8_A          241 ---------------GMKRAIKA-----------GV-DSIEHGTF--MDLEAMDLMIENGTYY----VPTISAGEF--VA  285 (418)
T ss_dssp             ---------------HHHHHHHH-----------TC-SEEEECTT--CCHHHHHHHHHHTCEE----ECCHHHHHH--HH
T ss_pred             ---------------HHHHHHHc-----------CC-CEEEECCC--CCHHHHHHHHHCCCEE----eeeechHHH--hh
Confidence                           13333332           22 13456554  2234455555556532    232211100  00


Q ss_pred             CCCCceEEcCCCCC-h-------hhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH
Q 013050          276 DGDTRFKCAPPIRD-A-------ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY  347 (450)
Q Consensus       276 ~~~~~~~~~~~~~~-~-------~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  347 (450)
                      ..+ .....|+... .       .....++.+++.|+.+++|||+. ..+...                    +...+..
T Consensus       286 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~gTD~~-~~~~~~--------------------~~~e~~~  343 (418)
T 2qs8_A          286 EKS-KIDNFFPEIVRPKAASVGPQISDTFRKAYEKGVKIAFGTDAG-VQKHGT--------------------NWKEFVY  343 (418)
T ss_dssp             HHT-TSTTSSCTTTHHHHHHHHHHHHHHHHHHHHHTCCBCCCCCBT-TBCTTC--------------------TTHHHHH
T ss_pred             hhc-cccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeCCCC-cCCcch--------------------HHHHHHH
Confidence            000 0011222221 1       12345678888999999999963 211100                    0011223


Q ss_pred             HHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEE
Q 013050          348 GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI  426 (450)
Q Consensus       348 ~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  426 (450)
                      +.+.++|++++++++|.|||+++|+ +++|+|+|||.|||||+|.|+..++                   ....+|+.||
T Consensus       344 ~~~~gls~~eal~~~T~n~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~-------------------~~~~~i~~v~  404 (418)
T 2qs8_A          344 MVENGMPAMKAIQSATMETAKLLRIEDKLGSIESGKLADLIAVKGNPIEDI-------------------SVLENVDVVI  404 (418)
T ss_dssp             HHHTTCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTTCG-------------------GGGGGEEEEE
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHhCCCCCCcccCCCCccCEEEECCChhhCH-------------------HHhcCccEEE
Confidence            4456999999999999999999999 6789999999999999998763211                   1114789999


Q ss_pred             ECCeEEEe
Q 013050          427 SRGNLVYK  434 (450)
Q Consensus       427 v~G~~v~~  434 (450)
                      ++|+++..
T Consensus       405 ~~G~~~~~  412 (418)
T 2qs8_A          405 KDGLLYEG  412 (418)
T ss_dssp             ETTEEEEC
T ss_pred             ECCEEEec
Confidence            99998863

>3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP}

Probab=99.97  E-value=2e-31  Score=259.14  Aligned_cols=363  Identities=13%  Similarity=0.098  Sum_probs=196.1

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCc---------c-------------c
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE---------W-------------E   59 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~---------~-------------~   59 (450)
                      .+++|+| ||+|++|++..+.+..+++.+++|++|++|+|||||+|+|+....+..         |             +
T Consensus        17 ~~~~v~i-~g~I~~Vg~~~~~~~~~~~~~vid~~g~~v~PGlId~H~H~~~~~~rg~~~~~~l~~wl~~~~~~~~~~~~~   95 (427)
T 3v7p_A           17 QDKAVAF-DKKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANPHLHLEFSANKATLQYGDFIPWLYSVIRHREDLLPL   95 (427)
T ss_dssp             ESCEEEE-SSBEEEEECHHHHHHHCTTSEEEEEEEEEEEECEEEEEECGGGTTCSSCSCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             eCcEEEE-CCEEEEecChhhhccccCCceEEeCCCCEEecCEeecccCcchhhcccccccCCHHHHHHHHHHhHHhcCHH
Confidence            4789999 999999998644321124678999999999999999999996443221         1             0


Q ss_pred             c----hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCcc----chHH----HHH
Q 013050           60 G----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY----NASA----LEA  127 (450)
Q Consensus        60 ~----~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~  127 (450)
                      .    ......+++++|||++.++. ...   ..   +.    .... ..++.............    ..+.    +..
T Consensus        96 ~~~~~~~~~~~e~l~~GvTtv~d~~-~~~---~~---~~----a~~~-~Gir~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (427)
T 3v7p_A           96 CDGACLEQTLSSIIQTGTTAIGAIS-SYG---ED---LQ----ACID-SALKVVYFNEVIGSNAATADVMYASFLERFHQ  163 (427)
T ss_dssp             SCHHHHHHHHHHHHHTTEEEEEEEE-SSS---TT---HH----HHHH-BSSEEEEEEEECBCCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEEec-CcH---HH---HH----HHHh-cCCeEEEeccccCCChhhhhHHHHHHHHHHHH
Confidence            0    12234468899999999985 221   11   11    1111 12222222111111111    1111    112


Q ss_pred             HHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCh-hhhhhhhhhccCcCCccccccccCCCChH
Q 013050          128 LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKTRPPS  206 (450)
Q Consensus       128 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  206 (450)
                      ........++....+   .....++++.++++++.|+++|+++.+|+.+. ..........+...+.. ...+....|. 
T Consensus       164 ~~~~~~~~i~~~~~~---~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~E~~~e~~~~~~~~g~~~~~~-~~~~~~~~~~-  238 (427)
T 3v7p_A          164 SKKHENERFKAAVAI---HSPYSVHYILAKRALDIAKKYGSLVSVHFMESRAEREWLDKGSGEFAKFF-KEFLNQTRPV-  238 (427)
T ss_dssp             HHTTCBTTEEEEEEE---CCTTTBCHHHHHHHHHHHHHHTCCEEEEESCSHHHHHHHHHSCSHHHHHH-HHHTCCCSCS-
T ss_pred             hhhccCCceEEEEec---CCCCcCCHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhcCcchhhh-hhhccCCCcc-
Confidence            111112222222222   12235788999999999999999999998443 32222221111000000 0000000010 


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCC
Q 013050          207 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP  286 (450)
Q Consensus       207 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (450)
                            ....+....      +.+.+..+.|+...  +.+.++.+++.++  .+.+||........          ..++
T Consensus       239 ------~~~~~~l~~------~~~~~~~~~H~~~~--~~~~~~~l~~~g~--~~~~~p~s~~~~~~----------~~~~  292 (427)
T 3v7p_A          239 ------NDTKSFLEL------FKELHTLFVHMVWA--NEEEIQTIASYNA--HIIHCPISNRLLGN----------GVLD  292 (427)
T ss_dssp             ------SCHHHHHHT------TTTSEEEEEECTTC--CHHHHHHHHHSEE--EEEECHHHHHHTTC----------CCCC
T ss_pred             ------cCHHHHHhh------hcCCCEEEEECCCC--CHHHHHHHHHcCC--EEEECHHHHHHhcC----------CCCC
Confidence                  011121111      01556777887763  3345666666664  44447764432111          1122


Q ss_pred             CCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhH-HHHHHHHHHhcCCCHHHHHHHHhhc
Q 013050          287 IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYGRKYGVTLEQLASWWSER  365 (450)
Q Consensus       287 ~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~gls~~~al~~aT~~  365 (450)
                      ++.          + .|+.+++|||+.+.+....++               ... ...........+++++++++++|.|
T Consensus       293 ~~~----------~-~Gv~v~lgtD~~~~~~~~~~~---------------~~~~~a~~~~~~~~~~~~~~~~~~~~t~~  346 (427)
T 3v7p_A          293 LEK----------I-KSIPYAIATDGLSSNYSLNMY---------------EELKAALFVHPNKEATTFAKELIIRATKA  346 (427)
T ss_dssp             TTT----------T-TTSCEEECCCCTTSCSCCCHH---------------HHHHHHHHHSTTSCHHHHHHHHHHHHTHH
T ss_pred             HHH----------H-CCCeEEEeCCCCCCCCCCCHH---------------HHHHHHHHhccCCCcccCHHHHHHHHHHH
Confidence            221          2 799999999965432211111               111 1111110111236679999999999


Q ss_pred             hhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCc
Q 013050          366 PAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGS  445 (450)
Q Consensus       366 ~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~  445 (450)
                      ||+++|++ .|+|++|+.|||+|+|.+.++..+.          +.|+......++|..|||+|++||++|+++....++
T Consensus       347 ~a~~~g~~-~g~l~~G~~Ad~~~~d~~~~~~~~~----------~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~  415 (427)
T 3v7p_A          347 GYDALGFE-GGEIAVGKDADMQLIDLPEGLTNVE----------DLYLHVILHTTKPKKVYIQGEEHVREAENLYFQSHH  415 (427)
T ss_dssp             HHHHHTCS-CSSCCTTSBCCEEEEECCTTCCCGG----------GHHHHHHHHCSSCSEEEETTEEEEC---CCCBC---
T ss_pred             HHHHhCCC-CceeCCCCccCEEEEcCCCccCCCc----------cchHHHhcccCCccEEEECCEEEEECCcccCCcccc
Confidence            99999996 8999999999999999886544321          222211122357999999999999999999776554

>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus}

Probab=99.97  E-value=1.8e-30  Score=255.41  Aligned_cols=347  Identities=17%  Similarity=0.125  Sum_probs=190.7

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC--------------CCcc---------
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG--------------RTEW---------   58 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~--------------~~~~---------   58 (450)
                      .+++|+|+||||++|++..+       .++||+.|++|+|||||+|+|+....              +..|         
T Consensus        27 ~~~~v~I~~g~I~~Ig~~~~-------~~~iD~~g~~v~PGlID~H~H~~~~~~rg~~~~~~~~~~~~~~w~~~~~~~~~   99 (458)
T 4f0l_A           27 ENVRIGIAGGVICSIETGVL-------AGPDDERQSVVVAGMANLHSHAFQYGMAGLAERRGPSADSFWSWREIMYKFAL   99 (458)
T ss_dssp             EEEEEEEETTEEEEEECSCC-------CCTTCEEEEEEEECEEEEEECGGGGGGTTSSCBCCSCSSTTHHHHHHHHHHHH
T ss_pred             cCceEEEECCEEEEEeCCCc-------cccccCCCCEEccCceecccchhhhhhcccccccccCCCcHHHHHHHhhhhhh
Confidence            46899999999999998643       34689999999999999999984221              1011         


Q ss_pred             ----cchH----HHHHHHHhCCceEEEeCCC-----CCCCCCCcHHHHHHHHHHHhc-CCceEE--EEec-----cccCC
Q 013050           59 ----EGFP----SGTKAAAAGGITTLIDMPL-----NSDPSTISTETLKLKVDAAEK-RIYVDV--GFWG-----GLVPE  117 (450)
Q Consensus        59 ----~~~~----~~~~~~~~~GvT~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~-----~~~~~  117 (450)
                          +++.    ....+++++|||++.++..     +..+.....+.+....+.... .....+  .+..     ...+.
T Consensus       100 ~~~~e~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~~~~~~~~  179 (458)
T 4f0l_A          100 TMTPEQAEAVALRLYVDMLEAGFTRVGEFHYLHHDCDGTPYANLSEMADRIAAAATTAGMGLTLLPVFYAHSGFGGAAAN  179 (458)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHTTEEEEEEEECCCSCTTSCCCSSTTHHHHHHHHHHHHHTCEEEEEEEECCEEETTTEECC
T ss_pred             hCCHHHHHHHHHHHHHHHHhcCCcEEEeeeeeccccccccccchhhhHHHHHHHHHHcCCeEEEecchhccccccccCCc
Confidence                0111    1234678899999999631     011222222222222222221 111111  1110     01110


Q ss_pred             --------C-ccchHHHHHHHH--cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC-Chhhhhhhhh
Q 013050          118 --------N-AYNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE-MEKGSERHVK  185 (450)
Q Consensus       118 --------~-~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~-~~~~~~~~~~  185 (450)
                              + ....+.+.++.+  .+...+.....+   ...+.++.+.++++++.|+  |+++.+|+. ....+.....
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~a~--g~~v~~H~~e~~~~~~~~~~  254 (458)
T 4f0l_A          180 EGQRRFINDPERFARLIEGCRKTLEGFEGAVLGVAP---HSLRAVTPDELDSVTQLLP--DAPVHIHVAEQVKEVEDCIA  254 (458)
T ss_dssp             GGGTTTCCCHHHHHHHHHHHHHHHTTCTTCEECBEE---CBTTTSCHHHHHHHTTSST--TSCEEEEESCSHHHHHHHHH
T ss_pred             hhhhhhhcCHHHHHHHHHHHHHHhccCCceEEEEec---CCcCcCCHHHHHHHHHHhc--CCCEEEEeCCCHHHHHHHHH
Confidence                    0 011222233322  111111222211   1224578899999998888  999999995 3333222222


Q ss_pred             hccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcc
Q 013050          186 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH  265 (450)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~  265 (450)
                      ..+             .       ..+..+.+...        .+.+..+.|+...  +.+.++.+++.++.+..  ||.
T Consensus       255 ~~g-------------~-------~~~~~l~~~g~--------l~~~~~~~H~~~~--~~~~~~~l~~~g~~~~~--~p~  302 (458)
T 4f0l_A          255 WSG-------------K-------RPVEWLLDHQD--------VTARWCLIHATHM--SDEETKHMAKAGAIAGL--CPV  302 (458)
T ss_dssp             HHS-------------S-------CHHHHHHHHSC--------CCTTEEEEECCSC--CHHHHHHHHHHTCEEEE--CHH
T ss_pred             HhC-------------C-------CHHHHHHHcCC--------CCCCeEEEEeccC--CHHHHHHHHHcCCeEEE--Ccc
Confidence            111             0       01122222211        1445666777652  22345555555654443  665


Q ss_pred             hhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhh-HHHHH
Q 013050          266 YLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF-VLPVT  344 (450)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~  344 (450)
                      .......                   ....+..+++.|+.+++|||..+..                  ..... .....
T Consensus       303 s~~~l~~-------------------~~~~~~~~~~~Gv~v~lgtD~~~~~------------------~~~~~~~~~~~  345 (458)
T 4f0l_A          303 TEANLGD-------------------GTFNATEFAAAGGKFGIGSDSNVLI------------------GIGDELRQLEY  345 (458)
T ss_dssp             HHHHTTC-------------------CCCCHHHHHHTTCEEEECCBTTSSC------------------CHHHHHHHHHH
T ss_pred             ccccccC-------------------CCccHHHHHHCCCeEEEECCCCCCC------------------CHHHHHHHHHH
Confidence            3321100                   0112456678999999999953221                  11111 11111


Q ss_pred             HHHHHh---------cCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCC
Q 013050          345 WSYGRK---------YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG  415 (450)
Q Consensus       345 ~~~~~~---------~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~  415 (450)
                      ......         .+++++++++++|.|||+++|+ +.|+|++||.|||||+|.+.++..+.          ++++..
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~~A~~lg~-~~G~l~~G~~ADlvv~d~~~~~~~~~----------~~~~~~  414 (458)
T 4f0l_A          346 SQRLYHRARNVLAANEGSTGRALFDGAVLGGNIAMGR-PEDGLKKGASADFVSLDVERLPHAKG----------DVVLDG  414 (458)
T ss_dssp             HHHHHHTCSSCSCSTTSBHHHHHHHHHHHHHHHHTTC-TTCSSSTTSBCCEEEEECTTSTTCCH----------HHHHHH
T ss_pred             HHhhhccCccccCCcccCCHHHHHHHHHHHHHHHhCC-CCCcCCCCCcCCEEEEeCCCCccCCc----------ccHHHh
Confidence            122211         2589999999999999999999 68999999999999999886443211          222221


Q ss_pred             ceEe--eEEEEEEECCeEEEecCcccC
Q 013050          416 RRLS--GKVLATISRGNLVYKEGNHAP  440 (450)
Q Consensus       416 ~~~~--~~v~~v~v~G~~v~~~g~~~~  440 (450)
                      ..+.  .+|..|||+|++||++|+++.
T Consensus       415 ~~~~~~~~v~~v~v~G~~v~~~g~~~d  441 (458)
T 4f0l_A          415 WIFAGRAHVCDVWVRGVKQVEGGRHRL  441 (458)
T ss_dssp             HHHTSCCEEEEEEETTEEEEETTEETT
T ss_pred             CeEcCCCCceEEEECCEEEEECCEeCC
Confidence            1110  189999999999999999863

>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A

Probab=99.97  E-value=5.1e-30  Score=249.46  Aligned_cols=325  Identities=20%  Similarity=0.175  Sum_probs=183.6

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCC-CCCCcEEecCCCEEeccceeeccccCCCCCCc------------------------
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRN-SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE------------------------   57 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~-~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~------------------------   57 (450)
                      .++|+|+||||++|++..+.+.. .+..++||++|++|+|||||+|+|+...+...                        
T Consensus        39 ~~~v~I~~g~I~~vg~~~~~~~~~~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~  118 (419)
T 2puz_A           39 NAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHLVFGGNRAMEFEMRLNGATYEEIAKAGGGIVS  118 (419)
T ss_dssp             EEEEEEETTEEEEEEETTSCCGGGSCCSEEEECTTCEEEECEEECCCCCCCSSCCHHHHHHHHTTCCHHHHHHTTCSHHH
T ss_pred             ceEEEEECCEEEEEcChhhhhhhccCCCeEEeCCCCEeCcCceecccCccchhhhHHHHHHHhcCCCHHHHHhcCCCeec
Confidence            57899999999999986543210 01358999999999999999999996543210                        


Q ss_pred             ---------ccch----HHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEE--eccccCC-C---
Q 013050           58 ---------WEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF--WGGLVPE-N---  118 (450)
Q Consensus        58 ---------~~~~----~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~---  118 (450)
                               .+.+    ....+.++++|+|++.++. ................+.......+++..  .+..... .   
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  197 (419)
T 2puz_A          119 SVRDTRALSDEVLVAQALPRLDTLLSEGVSTIEIKS-GYGLDIETELKMLRVARRLETLRPVRIVTSYLAAHATPADYKG  197 (419)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHTTTEEEEEEEC-CSCCSHHHHHHHHHHHHHHTTTSSCEEEEEECCTTCCCGGGTT
T ss_pred             chhhhccCCHHHHHHHHHHHHHHHHhcCCeEEEeCC-CCCCCchhHHHHHHHHHHHhhhcCceEEEEecccccCchhhcc
Confidence                     0001    1123678899999998853 11110001111122222222222333322  1111100 0   


Q ss_pred             --ccchH-----HHHHHHHcC-CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCc
Q 013050          119 --AYNAS-----ALEALLNAG-VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT  190 (450)
Q Consensus       119 --~~~~~-----~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~  190 (450)
                        ....+     .+..+...+ ....+.+.      +....+.+.+.++++.|+++|+++.+|+.....           
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~-----------  260 (419)
T 2puz_A          198 RNADYITDVVLPGLEKAHAEGLADAVDGFC------EGIAFSVKEIDRVFAAAQQRGLPVKLHAEQLSN-----------  260 (419)
T ss_dssp             CHHHHHHHTHHHHHHHHHHTTCCSEECCEE------STTSBCHHHHHHHHHHHHHTTCCBEEEESSSSC-----------
T ss_pred             cHHHHHHHHHhhhhhhhhhccccccccccc------CCCCcCHHHHHHHHHHHHHCCCcEEEEeccccc-----------
Confidence              00111     111222222 22222221      112457899999999999999999999943210           


Q ss_pred             CCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccc
Q 013050          191 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS  270 (450)
Q Consensus       191 ~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~  270 (450)
                                        ...++.    +.+.       +. ..+.|+...  ..+.++.+++.|+.+.  .+|......
T Consensus       261 ------------------~~~~~~----~~~~-------g~-~~~~H~~~~--~~~~~~~~~~~g~~~~--~~p~~~~~l  306 (419)
T 2puz_A          261 ------------------LGGAEL----AASY-------NA-LSADHLEYL--DETGAKALAKAGTVAV--LLPGAFYAL  306 (419)
T ss_dssp             ------------------CSHHHH----HHHT-------TC-SEEEECTTC--CHHHHHHHHHHTCEEE--ECHHHHHHH
T ss_pred             ------------------CCHHHH----HHhc-------CC-ceehHhccC--CHHHHHHHHHcCCcEE--ECCchhhhh
Confidence                              001111    1221       22 235666652  2345556666665443  366432211


Q ss_pred             ccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCC-hhhhcccCCCccccCCCCcchhhHHHHHHH-HH
Q 013050          271 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV-PELKLLDEGNFLKAWGGISSLQFVLPVTWS-YG  348 (450)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~  348 (450)
                      .      +   ...         ..+..+++.|+.+++|||+.+.. +..                   . +...+. ..
T Consensus       307 ~------~---~~~---------~~~~~~~~~Gv~~~lgsD~~~~~~~~~-------------------~-l~~~~~~~~  348 (419)
T 2puz_A          307 R------E---KQL---------PPVQALRDAGAEIALATDCNPGTSPLT-------------------S-LLLTMNMGA  348 (419)
T ss_dssp             T------C---CCC---------CCHHHHHHHTCCEEECCCCCSSSCCBC-------------------C-HHHHHHHHH
T ss_pred             c------c---ccc---------ccHHHHHHCCCeEEEECCCCCCCCccc-------------------c-HHHHHHHhc
Confidence            0      0   000         12345677899999999975431 100                   1 122222 23


Q ss_pred             HhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEE
Q 013050          349 RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS  427 (450)
Q Consensus       349 ~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v  427 (450)
                      ...++|++++++++|.|||+++|+ +++|+|+|||+|||||+|.++...+.      ..          ....+|..||+
T Consensus       349 ~~~~ls~~~al~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~~~~~~~~------~~----------~~~~~v~~v~v  412 (419)
T 2puz_A          349 TLFRMTVEECLTATTRNAAKALGLLAETGTLEAGKSADFAIWDIERPAELV------YR----------IGFNPLHARIF  412 (419)
T ss_dssp             HHHCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEECCSSTTHHH------HC----------BSCCCEEEEEE
T ss_pred             cccCCCHHHHHHHHHHHHHHHcCCCCCccccCCCCcCCEEEECCCchhcch------hh----------hcCCceEEEEE
Confidence            456899999999999999999999 66999999999999999987532211      10          00136999999


Q ss_pred             CCeEEE
Q 013050          428 RGNLVY  433 (450)
Q Consensus       428 ~G~~v~  433 (450)
                      +|++|.
T Consensus       413 ~G~~v~  418 (419)
T 2puz_A          413 KGQKVS  418 (419)
T ss_dssp             TTEECC
T ss_pred             CCEEcC
Confidence            999874

>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A*

Probab=99.97  E-value=2.8e-30  Score=253.23  Aligned_cols=347  Identities=16%  Similarity=0.160  Sum_probs=194.5

Q ss_pred             cceeEEE-eCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC--------------cc--------
Q 013050            2 CKRAVEI-KEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT--------------EW--------   58 (450)
Q Consensus         2 ~~~~V~I-~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~--------------~~--------   58 (450)
                      .+++|.| +||+|++|++..+.      ..++|++| +|+|||||+|+|+....+.              .|        
T Consensus        17 ~~~~v~i~~~g~I~~ig~~~~~------~~~~d~~g-~v~PGfId~H~H~~~~~~rg~~~~~~~~~~~l~~wl~~~~~~~   89 (453)
T 3mdu_A           17 RNVRFEISADGVLAEIRPDANA------DGAERLGG-AVLPGMPNLHSHAFQRAMAGLAEVAGNPNDSFWTWRELMYRMV   89 (453)
T ss_dssp             EEEEEEECTTSBEEEEESSCCC------TTSEECSS-CEEECEEEEEECGGGGGGTTTTCCCSSTTCCHHHHHHHHHHHH
T ss_pred             cCeEEEEecCCEEEEecCCCCc------ccccccCC-cccccceecccchHHHhhccccccccCCCCcHHHHHHHHhhhh
Confidence            4689999 89999999986542      24579999 9999999999998422111              01        


Q ss_pred             -----cchHH----HHHHHHhCCceEEEeCCCC-----CCCCCCcHHHHHHHHHHHhcCCceEEEEecc------c---c
Q 013050           59 -----EGFPS----GTKAAAAGGITTLIDMPLN-----SDPSTISTETLKLKVDAAEKRIYVDVGFWGG------L---V  115 (450)
Q Consensus        59 -----~~~~~----~~~~~~~~GvT~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~  115 (450)
                           +++..    ...+++++|||++.++.+.     ..+.....+......+..... .++......      .   .
T Consensus        90 ~~~~~e~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~-Gir~~~~~~~~~~~~~~~~~  168 (453)
T 3mdu_A           90 ARLSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRAASAA-GIGLTLLPVLYSHAGFGGQP  168 (453)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTEEEEEEEECCCSCTTSCCCSSTTHHHHHHHHHHHHH-TCEEEEEECBCCBSSTTTCB
T ss_pred             hhCCHHHHHHHHHHHHHHHHHcCCcEEEEeeEeccccccccccchhhHHHHHHHHHHHh-CCeEEEecchhccccccCCC
Confidence                 11111    2335889999999986310     111112222222333332221 222221100      0   0


Q ss_pred             CC--------C-ccchHHHHHHHH----cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEec-CChhhhh
Q 013050          116 PE--------N-AYNASALEALLN----AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA-EMEKGSE  181 (450)
Q Consensus       116 ~~--------~-~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~-~~~~~~~  181 (450)
                      +.        + ....+.+.++.+    .+. .+.  +++   +....++.+.++++++.|+ +|+++.+|+ +....+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~p---~~~~~~~~e~l~~~~~~A~-~g~~v~~H~~e~~~e~~  241 (453)
T 3mdu_A          169 ASEGQRRFINGSEAYLELLQRLRAPLEAAGH-SLG--LCF---HSLRAVTPQQIATVLAAGH-DDLPVHIHIAEQQKEVD  241 (453)
T ss_dssp             CCGGGGGGCCCHHHHHHHHHHHHHHHHHHTC-EEC--EEE---EETTTSCHHHHHHHHTSSC-TTSCEEEEESCSHHHHH
T ss_pred             CchhhhhccCCHHHHHHHHHHHHHHhhcCCC-eEE--Eec---CCCCcCCHHHHHHHHHHHh-cCCCEEEEeCCCHHHHH
Confidence            00        0 011222223222    122 211  111   1113578999999999999 999999997 4443333


Q ss_pred             hhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEe
Q 013050          182 RHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE  261 (450)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~  261 (450)
                      ..+...+                    ...++.+.+...        .+.+..+.|+...  +.+.++.+++.|+.+.. 
T Consensus       242 ~~~~~~g--------------------~~~v~~l~~~g~--------~~~~~~~~H~~~~--~~~~i~~la~~g~~v~~-  290 (453)
T 3mdu_A          242 DCQAWSG--------------------RRPLQWLYENVA--------VDQRWCLVHATHA--DPAEVAAMARSGAVAGL-  290 (453)
T ss_dssp             HHHHHHS--------------------SCHHHHHHHHSC--------CCTTEEEEECCSC--CHHHHHHHHHHTCEEEE-
T ss_pred             HHHHHhC--------------------CCHHHHHHHcCC--------CCCCeEEEEcCCC--CHHHHHHHHHcCCEEEE-
Confidence            3332211                    001222222211        1456677777652  23445666666654444 


Q ss_pred             cCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHH
Q 013050          262 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL  341 (450)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  341 (450)
                       ||........                   ....+..+++.|+.+++|||.........                 +...
T Consensus       291 -~P~sn~~lg~-------------------g~~p~~~~~~~Gv~v~lgtD~~~~~~~~~-----------------~~~~  333 (453)
T 3mdu_A          291 -CLSTEANLGD-------------------GIFPATDFLAQGGRLGIGSDSHVSLSVVE-----------------ELRW  333 (453)
T ss_dssp             -CHHHHHHTTC-------------------CCCCHHHHHHTTCEEEECCBTCSCCCHHH-----------------HHHH
T ss_pred             -CchhHhhcCC-------------------CCCCHHHHHHCCCEEEEECCCCCCCCHHH-----------------HHHH
Confidence             7753321110                   01124566789999999999532211110                 0111


Q ss_pred             HHHHHHHH----------hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCcc
Q 013050          342 PVTWSYGR----------KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSIS  411 (450)
Q Consensus       342 ~~~~~~~~----------~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~  411 (450)
                      ........          +.+++++++++++|.|||+++|+ +.|+|++|+.|||+|+|.+.++...       ... ++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~~~-~~G~l~~G~~AD~~~~d~~~~~~~~-------~~~-~~  404 (453)
T 3mdu_A          334 LEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALGQ-PIGSLAVGRRADLLVLDGNDPYLAS-------AEG-DA  404 (453)
T ss_dssp             HHHHHHHHHTCSCCSCBTTBCCHHHHHHHHHHHHHHHHHTS-SCSSCCTTSBCCEEEECTTCHHHHT-------CCH-HH
T ss_pred             HHHHHhhhccCCccccCcccCCCHHHHHHHHHHHHHHHhCC-CCCccCCCCcCCEEEEeCCCccccC-------CCc-cC
Confidence            11111111          12799999999999999999999 7999999999999999987543221       011 23


Q ss_pred             ccCCceE---eeEEEEEEECCeEEEecCcccC
Q 013050          412 AYLGRRL---SGKVLATISRGNLVYKEGNHAP  440 (450)
Q Consensus       412 ~~~~~~~---~~~v~~v~v~G~~v~~~g~~~~  440 (450)
                      |+...++   ..+|..|||+|++||++|+++.
T Consensus       405 ~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~  436 (453)
T 3mdu_A          405 LLNRWLFAGGDRQVRDVMVAGRWVVRDGRHAG  436 (453)
T ss_dssp             HHHHHHHHCCGGGEEEEEETTEEEEBTTBCTT
T ss_pred             hHHHheeeCCCCCeeEEEECCEEEEECCccCC
Confidence            3322222   1479999999999999999874

>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis}

Probab=99.97  E-value=4.6e-30  Score=247.79  Aligned_cols=333  Identities=18%  Similarity=0.170  Sum_probs=176.6

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecC-CCEEeccceeeccccCCC---CCCcccchHHHHHHHHhCCceEEE
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYG-EAVIMPGLIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLI   77 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~-g~~v~PG~iD~H~H~~~~---~~~~~~~~~~~~~~~~~~GvT~~~   77 (450)
                      .+++|+|+||+|++|++..+..   ++.++||++ |++|+|||||+|+|+..+   .....+++....+.++++|||+++
T Consensus        20 ~~~~v~I~~g~I~~ig~~~~~~---~~~~viD~~~g~~v~PGlID~H~H~~~~~~~~~~~~e~~~~~~~~~l~~GvTtv~   96 (396)
T 2vhl_A           20 KNGYVGINDGKISTVSTERPKE---PYSKEIQAPADSVLLPGMIDIHIHGGYGADTMDASFSTLDIMSSRLPEEGTTSFL   96 (396)
T ss_dssp             EEEEEEEETTEEEEEESSCCSS---CCSEEEECCTTCEEEECEEEEEECEETTEEGGGCSHHHHHHHHHHGGGGTEEEEE
T ss_pred             cCceEEEECCEEEEEECCCCCC---CCCceEcCCCCCEEcCCEEEEeecCCcCccccCCCHHHHHHHHHHHHcCCeeEEE
Confidence            3589999999999998321111   245899999 999999999999999764   223345566778899999999999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhc-C----CceEEEE--eccccCC-----------CccchHHHHHHHHcCCcEEEEe
Q 013050           78 DMPLNSDPSTISTETLKLKVDAAEK-R----IYVDVGF--WGGLVPE-----------NAYNASALEALLNAGVLGLKSF  139 (450)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~--~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~  139 (450)
                      +++ ++.+.......+....+.... .    ....++.  .+.....           .....+.++++.+.+...++.+
T Consensus        97 d~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~  175 (396)
T 2vhl_A           97 ATT-ITQEHGNISQALVNAREWKAAEESSLLGAELLGIHLEGPFVSPKRAGAQPKEWIRPSDVELFKKWQQEAGGLIKIV  175 (396)
T ss_dssp             EEC-CSCCHHHHHHHHHHHHHHHHHCSGGGSSSEEEEEEEECSSSCGGGCTTSCGGGCCCCCHHHHHHHHHHTTTCEEEE
T ss_pred             ecc-cCCCHHHHHHHHHHHHHHHhcccccccccceEEEeeecCccCccccCCCCHHHccCCCHHHHHHHHHhcCCcceEE
Confidence            996 332221111123333333322 2    1212222  2211110           0113456777777655444432


Q ss_pred             cccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEE-ecC-ChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHH
Q 013050          140 MCPSGINDFPMTNASHIKEGLSVLARYKRPLLV-HAE-MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT  217 (450)
Q Consensus       140 ~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~-H~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  217 (450)
                      ...+      ...  ...+.++.|+++|+++.. |+. ....+...+..                               
T Consensus       176 ~~~p------~~~--~~~~~~~~a~~~g~~v~~gH~~~~~~~~~~a~~~-------------------------------  216 (396)
T 2vhl_A          176 TLAP------EED--QHFELIRHLKDESIIASMGHTDADSALLSDAAKA-------------------------------  216 (396)
T ss_dssp             EECG------GGS--GGGHHHHHHHHTTCEEEECSBCCCHHHHHHHHHT-------------------------------
T ss_pred             EECC------CCC--CHHHHHHHHHHCCCEEeecccCCCHHHHHHHHHc-------------------------------
Confidence            2111      111  112567888999999988 985 33332222221                               


Q ss_pred             HHHhhccCCCCCCceEEEEecCChhHHH-----HHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhh
Q 013050          218 VAKDTRTDGPAEGAHLHIVHLSDASSSL-----DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAAN  292 (450)
Q Consensus       218 l~~~~~~~~~~~~~~~~~~h~~~~~~~~-----~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (450)
                                  |.+ ++.|++......     ..+..... ...++++.++++..++.                   ..
T Consensus       217 ------------G~~-~i~H~~~~~~~~~~~~~G~~~~~~~-~~~~~~e~~~h~~~l~~-------------------~~  263 (396)
T 2vhl_A          217 ------------GAS-HMTHLYNAMSPFHHREPGVIGTALA-HDGFVTELIADGIHSHP-------------------LA  263 (396)
T ss_dssp             ------------TCC-EESSTTSSBCCCCSSSCHHHHHHHH-CTTCEEEEECSSSSSCH-------------------HH
T ss_pred             ------------CCC-EeEeCCccCcccccCCCCchhhhhc-CCCcEEEEcCCccccCH-------------------HH
Confidence                        222 333332210000     00000000 00112222222211110                   00


Q ss_pred             HHHHHHHHhcCC-eeEEcCCCCCC---C-------hhhhcccCCCccccCCCCcchhhHHHHHHHHHHh-cCCCHHHHHH
Q 013050          293 KEKLWEALMDGH-IDMLSSDHSPT---V-------PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLAS  360 (450)
Q Consensus       293 ~~~l~~~~~~g~-~~~~gtD~~~~---~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~gls~~~al~  360 (450)
                      ...+.+..  +. .+.+.+|....   .       +...+...|.+....++..+....+...+..+.+ .++|++++++
T Consensus       264 ~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~d~~~~g~~~~l~~~l~~~~~~~~~~~~~~l~  341 (396)
T 2vhl_A          264 AKLAFLAK--GSSKLILITDSMRAKGLKDGVYEFGGQSVTVRGRTALLSDGTLAGSILKMNEGARHMREFTNCSWTDIAN  341 (396)
T ss_dssp             HHHHHHHH--CTTSEEEECCBCTTTTSCSEEEEETTEEEEEETTEEECTTSCBCSBCCCHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHhhc--CCccEEEECcChhhcCCCCceEEECCeEEEEECCEEEeCCCcccccccCHHHHHHHHHHhcCCCHHHHHH
Confidence            00000000  11 11111121000   0       0000111111111122333444445555555444 6899999999


Q ss_pred             HHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc
Q 013050          361 WWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA  439 (450)
Q Consensus       361 ~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~  439 (450)
                      ++|.|||++||+ ++.|+|++|++|||||+|.+                           .+|..||++|++||+++++-
T Consensus       342 ~aT~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~---------------------------~~v~~v~~~G~~v~~~~~~~  394 (396)
T 2vhl_A          342 ITSENAAKQLGIFDRKGSVTVGKDADLVIVSSD---------------------------CEVILTICRGNIAFISKEAD  394 (396)
T ss_dssp             HHTHHHHHHHTCTTTSSSCCTTSBCCEEEECTT---------------------------CCEEEEEETTEEEEECSCCC
T ss_pred             HHHHHHHHHhCCcCCCceeCCCCcCCEEEECCC---------------------------CcEEEEEECCEEEEeccccc
Confidence            999999999999 56999999999999999965                           27899999999999999864

>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima}

Probab=99.97  E-value=3.2e-28  Score=234.65  Aligned_cols=325  Identities=21%  Similarity=0.226  Sum_probs=193.8

Q ss_pred             eeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcc--------------------cc---
Q 013050            4 RAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW--------------------EG---   60 (450)
Q Consensus         4 ~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~--------------------~~---   60 (450)
                      ++|+|+||+|++|++..+ +   .+.++||++|++|+|||||+|+|+........                    +.   
T Consensus        24 ~~v~i~~g~I~~i~~~~~-~---~~~~~id~~g~~~~Pg~~d~h~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (396)
T 3ooq_A           24 GDVLVSNGKVEKVGENIE-D---PDAEIVDLTGKFLFPGFVDAHSHIGLFEEGVGYYYSDGNEATDPVTPHVKALDGFNP   99 (396)
T ss_dssp             EEEEEETTEEEEEESCCC-C---TTSEEEECTTCEEEECEEEEEECTTTSCTTSCGGGCCSCCTTCSBCTTCBGGGGCCT
T ss_pred             eEEEEECCEEEEecCCCC-C---CCCeEEECCCCEEecCEEecccccCccccCccccccccccccCccCccccHhhhcCc
Confidence            789999999999998654 2   47889999999999999999999975321100                    00   


Q ss_pred             hHHHHHHHHhCCceEEEeCCCCCCCCCCcHH-----HHHHHHHHHhcCCceEEEEecccc-----------CCCc-cchH
Q 013050           61 FPSGTKAAAAGGITTLIDMPLNSDPSTISTE-----TLKLKVDAAEKRIYVDVGFWGGLV-----------PENA-YNAS  123 (450)
Q Consensus        61 ~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~  123 (450)
                      ......+++++|||++++++ ++.+......     ........... ....+....+..           +... ...+
T Consensus       100 ~~~~~~~~~~~GvTtv~~~~-gs~~~i~G~~~~~~~~~~~~~~~~~~-~~~~i~~~~g~~~~~~~~~~~~~p~~~~~~~~  177 (396)
T 3ooq_A          100 QDPAIERALAGGVTSVMIVP-GSANPVGGQGSVIKFRSIIVEECIVK-DPAGLKMAFGENPKRVYGERKQTPSTRMGTAG  177 (396)
T ss_dssp             TCHHHHHHHTTTEEEEEECC-CSSSSEEEEEEEEESCCSSHHHHEEE-EEEEEEEECSHHHHHHHHHTTCSCSSHHHHHH
T ss_pred             CcHHHHHHHhCCeEEEeccC-CCCCcccCeeEEEeccCCCHHHceec-CCcEEEEEcCCCCcccccccCCCCccHHHHHH
Confidence            11467889999999999996 3321110000     00001111111 111111111110           0000 1123


Q ss_pred             HHHHHHHcCCcEEEE---ecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcccccccc
Q 013050          124 ALEALLNAGVLGLKS---FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL  200 (450)
Q Consensus       124 ~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (450)
                      .+++..+.+......   .....+    +....+...+.+..+.+.++++.+|++...                      
T Consensus       178 ~l~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~e~l~~~~~~~~~v~iHa~~~~----------------------  231 (396)
T 3ooq_A          178 VIRDYFTKVKNYMKKKELAQKEGK----EFTETDLKMEVGEMVLRKKIPARMHAHRAD----------------------  231 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTC----CCCCCCHHHHHHHHHHTTSSCEEEEECSHH----------------------
T ss_pred             HHHHHHHHHHHHHHhhhhhhhccC----CCCCcChhHHHHHHHHcCCCcEEEEECchh----------------------
Confidence            333333211100000   000001    012223444555556689999999996543                      


Q ss_pred             CCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCc
Q 013050          201 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR  280 (450)
Q Consensus       201 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~  280 (450)
                                .+..+++++++.       +.++.+.|+.....   .++.+++.|+.+..  +|.+.+....        
T Consensus       232 ----------~i~~~~~~~~~~-------g~~~~i~H~~~~~~---~~~~l~~~gv~v~~--~P~~~~~~~~--------  281 (396)
T 3ooq_A          232 ----------DILTAIRIAEEF-------GFNLVIEHGTEAYK---ISKVLAEKKIPVVV--GPLLTFRTKL--------  281 (396)
T ss_dssp             ----------HHHHHHHHHHHH-------TCCEEEEECTTGGG---GHHHHHHHTCCEEE--CCCSSCCCSG--------
T ss_pred             ----------HHHHHHHHHHHc-------CCCEEEecCchHHH---HHHHHHHCCCCEEE--Ccccccccch--------
Confidence                      245677777766       77888999987522   36667777876665  5532211100        


Q ss_pred             eEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHH
Q 013050          281 FKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLAS  360 (450)
Q Consensus       281 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~  360 (450)
                           .++ ......+..+++.|+.++++||+.... ..                    .+......+.+.+++++++++
T Consensus       282 -----~~~-~~~~~~~~~l~~~Gv~v~lgtD~~~~~-~~--------------------~l~~~~~~~~~~gl~~~~al~  334 (396)
T 3ooq_A          282 -----ELK-DLTMETIAKLLKDGVLIALMCDHPVIP-LE--------------------FATVQAATAMRYGAKEEDLLK  334 (396)
T ss_dssp             -----GGT-TCCTTHHHHHHHTTCCEEECCTTTTSC-GG--------------------GHHHHHHHGGGGTCCHHHHHH
T ss_pred             -----hHH-hhhhHHHHHHHHCCCEEEEEcCCCccC-cc--------------------HHHHHHHHHHHcCCCHHHHHH
Confidence                 000 011234567788999999999963221 11                    122333445677999999999


Q ss_pred             HHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCccc
Q 013050          361 WWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA  439 (450)
Q Consensus       361 ~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~  439 (450)
                      ++|.|||+++|+ +++|+|++||.|||||+|.|+..         .             ..+|..||++|++||+..+-.
T Consensus       335 ~~T~n~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~---------~-------------~~~v~~v~~~G~~v~~~~~~~  392 (396)
T 3ooq_A          335 ILTVNPAKILGLEDRIGSIEPGKDADLVVWSGHPFD---------M-------------KSVVERVYIDGVEVFRREGHH  392 (396)
T ss_dssp             TTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTS---------T-------------TCCEEEEEETTEEEEECC---
T ss_pred             HHHHHHHHHhCCCCCeeeECCCCcCCEEEECCCccc---------c-------------ccceeEEEECCEEEeCCCCcc
Confidence            999999999999 66899999999999999976411         0             037899999999999976543

>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A*

Probab=99.96  E-value=6e-29  Score=238.72  Aligned_cols=337  Identities=16%  Similarity=0.126  Sum_probs=180.2

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC-CC------cccchHHHHHHHHhCCce
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG-RT------EWEGFPSGTKAAAAGGIT   74 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~-~~------~~~~~~~~~~~~~~~GvT   74 (450)
                      .+++|+|+||+|++|++..+.+   .+.++||++|++|+|||||+|+|+.... +.      ..+.+....++++++|||
T Consensus        17 ~~~~v~I~~g~I~~vg~~~~~~---~~~~viD~~g~~v~PGlID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~l~~GvT   93 (382)
T 1yrr_A           17 DDHAVVIADGLIKSVCPVAELP---PEIEQRSLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCT   93 (382)
T ss_dssp             SSEEEEEETTEEEEEEEGGGSC---TTCCEEECTTCEEEECEEEEEESEETTEESSSSTTTSSHHHHHHHHHHHHHTTEE
T ss_pred             eCCEEEEECCEEEEEecCCCCC---ccceeecCCCCEEccCEEEEeecccCCcCccccccCCCHHHHHHHHHHHHhCCeE
Confidence            4689999999999999764322   2568999999999999999999985321 11      113344567899999999


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHh--cCCceEEEEecccc-CC-----Ccc-----chHHHHHHHHcCCcEEEEecc
Q 013050           75 TLIDMPLNSDPSTISTETLKLKVDAAE--KRIYVDVGFWGGLV-PE-----NAY-----NASALEALLNAGVLGLKSFMC  141 (450)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~-----~~~-----~~~~~~~~~~~g~~~~~~~~~  141 (450)
                      +++++. ...+.......+....+...  ..........+... ..     ...     ..+.++ +.+.+...++.+. 
T Consensus        94 tv~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ik~~~-  170 (382)
T 1yrr_A           94 NYLPTL-ITTSDELMKQGVRVMREYLAKHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVD-FLCENADVITKVT-  170 (382)
T ss_dssp             EEEEEE-ECCCHHHHHHHHHHHHHHHHHCTTSBCCEEEECSSCCCSCC-CCCSCSCCHHHHHHHH-HHHHTTTTEEEEE-
T ss_pred             EEEeec-CCCCHHHHHHHHHHHHHHhhccCCceeEEEEeCCcCCccccCCCCHHHccCCCHHHHH-HHHhcCCCEEEEE-
Confidence            999975 33221111112222222222  11122222222111 10     111     124455 6666665565532 


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHhcCCcEEE-ecC-ChhhhhhhhhhccCcCCcccccc--ccCCCChHHHHHHHHHHHH
Q 013050          142 PSGINDFPMTNASHIKEGLSVLARYKRPLLV-HAE-MEKGSERHVKLEDDTLDTRSYST--YLKTRPPSWEEAAIRELLT  217 (450)
Q Consensus       142 ~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~-H~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~  217 (450)
                              ....+.+.++++.|+++|+++.+ |+. ....+...+..+.....+.....  .....+.     .+...  
T Consensus       171 --------~~~~~~~~~~~~~a~~~g~~v~~gH~~~~~~~~~~~~~~G~~~~~h~~~~~~~~~~~~~g-----~~~~~--  235 (382)
T 1yrr_A          171 --------LAPEMVPAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPG-----LAGAI--  235 (382)
T ss_dssp             --------ECGGGSCHHHHHHHHHTTCEEEECSCCCCHHHHHHHHHHTCCEESSTTTTSCCBCSSCCH-----HHHHH--
T ss_pred             --------ECCCCChHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHcCCCeeEECCCCCCccccCCcc-----hhhHh--
Confidence                    01114445788999999999998 996 45555544443221111110000  0001111     11111  


Q ss_pred             HHHhhccCCCCCCce-EEEEecCCh-hHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHH
Q 013050          218 VAKDTRTDGPAEGAH-LHIVHLSDA-SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEK  295 (450)
Q Consensus       218 l~~~~~~~~~~~~~~-~~~~h~~~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (450)
                       ....       +.. ..+.|+... ++.++.+.+.+  ...+..  ++......+   ... ..+...          .
T Consensus       236 -l~~~-------~~~~~~~~h~~~~~~~~~~~~~~~~--~~~~~~--~~d~~~~~g---~~~-~~~~~~----------~  289 (382)
T 1yrr_A          236 -LDEA-------DIYCGIIADGLHVDYANIRNAKRLK--GDKLCL--VTDATAPAG---ANI-EQFIFA----------G  289 (382)
T ss_dssp             -HHCT-------TCEEEEECSSSSSCHHHHHHHHHHH--GGGEEE--ECCBCTTTT---SCC-SEEEET----------T
T ss_pred             -hcCC-------cceeeecCcccccCHHHHHHHHHcC--CCcEEE--ECcChHhcC---CCC-ceEEEC----------C
Confidence             1100       111 133444321 15555555543  012222  221110000   000 011110          0


Q ss_pred             HHHHHhcCCee-EEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCC-
Q 013050          296 LWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-  372 (450)
Q Consensus       296 l~~~~~~g~~~-~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~-  372 (450)
                      +..+++.|+.+ ..|||..+                       ...+...+..+. ..++|++++++++|.|||++||+ 
T Consensus       290 ~~~~~~~Gv~~~~~Gt~~g~-----------------------~~~~~~~~~~~~~~~g~~~~~al~~aT~~~A~~lg~~  346 (382)
T 1yrr_A          290 KTIYYRNGLCVDENGTLSGS-----------------------SLTMIEGVRNLVEHCGIALDEVLRMATLYPARAIGVE  346 (382)
T ss_dssp             EEEEECSSCEECTTCCEEEB-----------------------CCCHHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTCT
T ss_pred             EEEEEECCEEEeCCCcCcCC-----------------------ccCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCC
Confidence            11224556554 12333110                       011222233333 57999999999999999999999 


Q ss_pred             CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050          373 VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE  435 (450)
Q Consensus       373 ~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~  435 (450)
                      +++|+|+|||+|||||+|.++                           +|..||++|++||++
T Consensus       347 ~~~G~i~~G~~ADlvvld~~~---------------------------~v~~v~~~G~~v~~~  382 (382)
T 1yrr_A          347 KRLGTLAAGKVANLTAFTPDF---------------------------KITKTIVNGNEVVTQ  382 (382)
T ss_dssp             TTSSSCCTTSBCCEEEECTTS---------------------------CEEEEEETTEEEEEC
T ss_pred             CCCCccCCCCCCCEEEECCCC---------------------------CEEEEEECCEEEEeC
Confidence            669999999999999999663                           689999999999975

>3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides}

Probab=99.96  E-value=7.5e-28  Score=230.71  Aligned_cols=339  Identities=18%  Similarity=0.124  Sum_probs=176.6

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCCcccc-------h-----HHHHHHHH
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEG-------F-----PSGTKAAA   69 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~-------~-----~~~~~~~~   69 (450)
                      .+++|+|+||||++|++..+...  ++.++||++|++|+|||||+|+|+..........       +     .......+
T Consensus        21 ~~~~V~I~dG~I~~Ig~~~~~~~--~~~~vID~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (403)
T 3mtw_A           21 DNPLVIVTDGRITSIGKKGDAVP--AGATAVDLPGVTLLPGLIDMHVHLDSLAEVGGYNSLEYSDRFWSVVQTANAKKTL   98 (403)
T ss_dssp             ESEEEEEETTEEEEEEETTCCCC--TTCEEEEEEEEEEEECEEEEEECTTCCTTCCGGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred             cCcEEEEECCEEEEEeCCCCCCC--CCCEEEECCCCEEEeChheeeeCCccccccCccccccccHHHHhhhhhhhhhhcc
Confidence            46899999999999998765322  4789999999999999999999997654332111       1     11233556


Q ss_pred             hCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecc-------ccCC-------------Ccc----chHHH
Q 013050           70 AGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG-------LVPE-------------NAY----NASAL  125 (450)
Q Consensus        70 ~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------------~~~----~~~~~  125 (450)
                      ..++++..+.. ...   .......... ...............       ....             ...    .....
T Consensus        99 ~~~~~~~~~~~-~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (403)
T 3mtw_A           99 EAGFTTVRNVG-AAD---YDDVGLREAI-DAGYVPGPRIVTAAISFGATGGHCDSTFFPPSMDQKNPFNSDSPDEARKAV  173 (403)
T ss_dssp             HTTEEEEEECC-CST---THHHHHHHHH-HTTSSCCCEEEECCSCEESTTSTTSCCSSCGGGCCCCTTCCCSHHHHHHHH
T ss_pred             ccccceeeccc-ccc---ccchhhhhhh-hccccccccccccccccccccccccccccccccccccccccchhHHHhhhh
Confidence            78999998875 211   1111111111 111111111111100       0000             000    12223


Q ss_pred             HHHHHcCCcEEEEeccc-----CCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcccccccc
Q 013050          126 EALLNAGVLGLKSFMCP-----SGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL  200 (450)
Q Consensus       126 ~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (450)
                      ......+..........     ...........+.+.++++.|++.+.++..|..........+.......      ...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  247 (403)
T 3mtw_A          174 RTLKKYGAQVIKICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAHAHGASGIREAVRAGVDTI------EHA  247 (403)
T ss_dssp             HHHHHTTCSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCSEE------EEC
T ss_pred             HhhhhhcchhhhhhhccccccccccccccccCHHHHHHHHHHHHHcCCeEEEEeccchhHHHHHHhccccc------ccc
Confidence            34444555555443211     1112234567788999999999999999999965443222221110000      000


Q ss_pred             CCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCc
Q 013050          201 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR  280 (450)
Q Consensus       201 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~  280 (450)
                      .....       .........        .  ....+...  ............+..  ...+....             
T Consensus       248 ~~~~~-------~~~~~~~~~--------~--~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~-------------  293 (403)
T 3mtw_A          248 SLVDD-------EGIKLAVQK--------G--AYFSMDIY--NTDYTQAEGKKNGVL--EDNLRKDR-------------  293 (403)
T ss_dssp             TTCCH-------HHHHHHHHH--------T--CEEECCCS--THHHHHHHHHHHTCC--HHHHHHHH-------------
T ss_pred             ccccc-------chhhhhccc--------c--ceeeeeec--cchhhhhhhhccccc--hhhccccc-------------
Confidence            00000       000000000        0  00011111  111111111111100  00000000             


Q ss_pred             eEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHH
Q 013050          281 FKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLAS  360 (450)
Q Consensus       281 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~  360 (450)
                            .............++.|....+|||........                     +...+..+.+.|+|++++|+
T Consensus       294 ------~~~~~~~~~~~~~~~~g~~~~~gt~~~~~~~~~---------------------~~~~~~~~~~~gls~~eal~  346 (403)
T 3mtw_A          294 ------DIGELQRENFRKALKAGVKMVYGTDAGIYPHGD---------------------NAKQFAVMVRYGATPLQAIQ  346 (403)
T ss_dssp             ------HHHHHHHHHHHHHHHHTCEEECCCCBTTBCTTC---------------------GGGHHHHHHHTTCCHHHHHH
T ss_pred             ------cccccccchhhHHHhcCCeEeeccCCcccccch---------------------HHHHHHHHHHcCCCHHHHHH
Confidence                  000112233455667899999999964332111                     11122345678999999999


Q ss_pred             HHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEE
Q 013050          361 WWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY  433 (450)
Q Consensus       361 ~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~  433 (450)
                      ++|.|||++||+ +++|+|++||+|||||||.||..++                   ....+|++||++||+|.
T Consensus       347 ~~T~npA~~lgl~~~~GsI~~G~~ADlvvld~dPl~di-------------------~~~~~v~~Vi~~G~vvk  401 (403)
T 3mtw_A          347 SATLTAAEALGRSKDVGQVAVGRYGDMIAVAGDPLADV-------------------TTLEKPVFVMKGGAVVK  401 (403)
T ss_dssp             HTTHHHHHHHTCTTTSSSCCTTSBCCEEEESSCTTTCG-------------------GGGGSCSEEEETTEEEE
T ss_pred             HHHHHHHHHhCCCCCceeeCCCCcceEEEECCChhHhH-------------------hhhcCcCEEEECCEEEe
Confidence            999999999999 7789999999999999998753211                   11135789999999763

>4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A*

Probab=99.96  E-value=1.7e-28  Score=251.76  Aligned_cols=157  Identities=22%  Similarity=0.273  Sum_probs=110.1

Q ss_pred             cceeEEEeCCEEEEeccCCCCC---------CCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWP---------RNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG   72 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~---------~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~G   72 (450)
                      +++||.|+||||++||+...+.         ...+++++||++|++|+|||||+|+|+..+.         .....+.+|
T Consensus       353 ~kADI~IkDGRIaAIGkagnpD~~dgV~pdl~ig~gtEVIDA~GkiVtPGfID~HvHl~~P~---------~~~eALasG  423 (840)
T 4gy7_A          353 IKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIVTAGAIDCHVHYICPQ---------LVYEAISSG  423 (840)
T ss_dssp             EEEEEEEETTEEEEEECCBCTTTCSSCCTTSBCCTTCEEEECTTCEEEECEEEEEEECCCTH---------HHHHHHHHT
T ss_pred             EEeeEEEECCEEEEEeccCCcccccccccccccCCCCEEEECCCCEEccCeeeeccCCCCCC---------chHHHHHhh
Confidence            5789999999999999743211         1125789999999999999999999987553         345668899


Q ss_pred             ceEEEeCCCCCC------CCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCC
Q 013050           73 ITTLIDMPLNSD------PSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN  146 (450)
Q Consensus        73 vT~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  146 (450)
                      +|+++..+.+..      ............... .....+++..++....   ...+.+.++.+.|+.+++.+..+    
T Consensus       424 VTTvv~gGtgp~~~~~~~~~~~~~~~~~~~l~a-~~~~~vn~g~~~~~~~---~~~~~L~el~~aGa~g~K~~~~~----  495 (840)
T 4gy7_A          424 ITTLVGGGTGPAAGTRATTCTPSPTQMRLMLQS-TDDLPLNFGFTGKGSS---SKPDELHEIIKAGAMGLKLHEDW----  495 (840)
T ss_dssp             EEEEEEECSSSCHHHHHSSCCCSHHHHHHHHHH-TTTSSSEEEEEEECCC---SSSHHHHHHHHHTCSEEEEETTT----
T ss_pred             HHHHHhCCCceecCcccccccchHHHHHHHHhh-hhcceeEEEEeCCCCc---ccHHHHHHhhhceeeEEEecccc----
Confidence            999998642111      112223333333322 2334566666543322   33456788889999999997543    


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCcEEEecCChh
Q 013050          147 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEK  178 (450)
Q Consensus       147 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~  178 (450)
                         ..+++.+.+++..+++++.++.+|.+...
T Consensus       496 ---~~t~~~i~~aL~~A~e~g~~V~ih~e~~~  524 (840)
T 4gy7_A          496 ---GSTPAAIDNCLTIAEHHDIQINIHTDTLN  524 (840)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCEEEEECCTTC
T ss_pred             ---CCCHHHHHHHHHHHHHhCCEEEEeccCcc
Confidence               45788999999999999999999986543

>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A*

Probab=99.96  E-value=1.5e-27  Score=224.12  Aligned_cols=331  Identities=16%  Similarity=0.137  Sum_probs=174.8

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCC----CCCcccchHHHHHHHHhCCceEEEe
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP----GRTEWEGFPSGTKAAAAGGITTLID   78 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~----~~~~~~~~~~~~~~~~~~GvT~~~~   78 (450)
                      .++|+|+||||.+|++..+.+   .+.++||++|++|+|||||+|+|....    ...+.+++.+..+.+++.|||+++.
T Consensus        21 ~~~i~I~dG~I~~i~~~~~~~---~~~~viD~~G~~v~PGfID~HvHg~~G~~~~d~~~~e~l~~~~~a~~~~GvTt~l~   97 (381)
T 3iv8_A           21 KHAVIINGDKIEAVCPIESLP---SEMNVVDLNGANLSPGFIDLQLNGCGGVMFNDEITAETIDTMHKANLKSGCTSFLP   97 (381)
T ss_dssp             SEEEEEETTEEEEEEEGGGSC---TTCEEEEEEEEEEEECEEEEEECEETTEETTTSCSHHHHHHHHHHHHHTTEEEEEE
T ss_pred             ccEEEEECCEEEEEeCCCCCC---CCCeEEECCCCEEccCeEeeeecccCCCCCCCCCCHHHHHHHHHHHHhCCcccccc
Confidence            478999999999999865432   357899999999999999999997532    1134567888899999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhcC--CceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHH
Q 013050           79 MPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHI  156 (450)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l  156 (450)
                      +. .+.+.......+....+..+..  ....++.-+++.....           .|+..-         ......+.+++
T Consensus        98 t~-~T~~~e~l~~al~~~~~~~~~~~~~ilGiHlEGPfis~~~-----------~Ga~~~---------~~i~~p~~~~~  156 (381)
T 3iv8_A           98 TL-ITSSDENMRQAIAAAREYQAKYPNQSLGLHLEGPYLNVMK-----------KGIHSV---------DFIRPSDDTMI  156 (381)
T ss_dssp             EE-ESCCHHHHHHHHHHHHHHHHHCSSSBCCEEEECSSCCGGG-----------CTTSCT---------TTCCCCCHHHH
T ss_pred             cc-CCCCHHHHHHHHHHHHHHHhcCCCceeEeeccCcccCHhh-----------cCCCCH---------HHcCCCCHHHH
Confidence            86 4444333333333333332221  2234444444332210           111000         00011234444


Q ss_pred             HHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEE
Q 013050          157 KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIV  236 (450)
Q Consensus       157 ~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  236 (450)
                      ++..+.+.  ++++...+.+..                                . .++++.+.+.       |+.+.+.
T Consensus       157 ~~~~~~~~--~i~~vTlAPE~~--------------------------------~-~~~i~~l~~~-------gi~vs~G  194 (381)
T 3iv8_A          157 DTICANSD--VIAKVTLAPENN--------------------------------K-PEHIEKLVKA-------GIVVSIG  194 (381)
T ss_dssp             HHHHHTTT--SEEEEEECCTTS--------------------------------C-HHHHHHHHHT-------TCEEEEC
T ss_pred             HHHHhccC--CeEEEEECCCCC--------------------------------c-HHHHHHHHHC-------CCEEEec
Confidence            44433211  233333331100                                0 1222222222       4555555


Q ss_pred             ecCChhHHHHHHHHHHhCCCcEEEecCcchhccccc----------ccCCCCCceEEcCCC--CChhhHHHHHHHHhcCC
Q 013050          237 HLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE----------EIPDGDTRFKCAPPI--RDAANKEKLWEALMDGH  304 (450)
Q Consensus       237 h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~g~  304 (450)
                      |..   .+.++.+++.+.|+....-.   +..+.+-          .+............-  -.+...+.+++...  -
T Consensus       195 Hs~---A~~e~~~~a~~~Ga~~~THl---fNaM~~~~hR~PG~vga~l~~~~~~~elI~DG~Hv~p~~~~~~~~~~g--~  266 (381)
T 3iv8_A          195 HTN---ATYSEARKSFESGITFATHL---FNAMTPMVGREPGVVGAIYDTPEVYAGIIADGFHVDYANIRIAHKIKG--E  266 (381)
T ss_dssp             SBC---CCHHHHHHHHHTTCCEESST---TSSBCCCBTTBCHHHHHHHHCTTCEEEEECSSSSSCHHHHHHHHHHHG--G
T ss_pred             CCC---CCHHHHHHHHHcCCCEeeeC---CCCCCCccCCCCchHHHHhcCCCcEEEEEcCCccCCHHHHHHHHHhcC--C
Confidence            533   23333444444443322100   0000000          000000111111110  01223333344442  5


Q ss_pred             eeEEcCCCCCCChhh----h------cccCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCC-
Q 013050          305 IDMLSSDHSPTVPEL----K------LLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ-  372 (450)
Q Consensus       305 ~~~~gtD~~~~~~~~----~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~~al~~aT~~~A~~lg~-  372 (450)
                      .+++.||..+..-..    .      ....|......+.+.+....+...++.+ ...++|++++++|+|.|||+++|+ 
T Consensus       267 ~~~lvTDam~a~G~~dg~y~lgg~~v~v~~g~~~l~~g~lAGs~l~l~~~v~~~v~~~g~~~~~al~~aT~~pA~~lg~~  346 (381)
T 3iv8_A          267 KLVLVTDATAPAGAEMDYFIFVGKKVYYRDGKCVDENGTLGGSALTMIEAVQNTVEHVGIALDEALRMATLYPAKAIGVD  346 (381)
T ss_dssp             GEEEECCBCTTTTSCCSEEESSSCEEEEETTEEECTTCCBCSBCCCHHHHHHHHHHTTCCCHHHHHHHHTHHHHHHHTCT
T ss_pred             EEEEEeCcccccCCCCCeeecCCeEEEEECCEEEcCCCCccChhhhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhCCC
Confidence            567889964321100    0      0011111112223344444455555554 456999999999999999999999 


Q ss_pred             CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050          373 VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK  434 (450)
Q Consensus       373 ~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~  434 (450)
                      +++|+|++||.||||++|.+.                           +|..||++|++||.
T Consensus       347 ~~~G~i~~G~~ADlvvld~~~---------------------------~v~~t~~~G~~v~~  381 (381)
T 3iv8_A          347 EKLGRIKKGMIANLTVFDRDF---------------------------NVKATVVNGQYEQN  381 (381)
T ss_dssp             TTSSSCCTTSBCCEEEECTTC---------------------------CEEEEEETTEEEEC
T ss_pred             CCCceECCCCcCCEEEECCCC---------------------------CEEEEEECCEEeeC
Confidence            568999999999999999542                           68899999999984

>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16

Probab=99.95  E-value=1.3e-27  Score=232.35  Aligned_cols=322  Identities=15%  Similarity=0.081  Sum_probs=172.7

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC-------CCcc--------------cc
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG-------RTEW--------------EG   60 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~-------~~~~--------------~~   60 (450)
                      .+++|+|+||||++|++..+.+...++.++||++ ++|+|||||+|+|+....       +..|              ..
T Consensus        55 ~~~~V~I~~g~I~~vg~~~~~~~~~~~~~viD~~-~~v~PGlID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  133 (420)
T 2imr_A           55 SPGGVVVVGETVAAAGHPDELRRQYPHAAEERAG-AVIAPPPVNAHTHLDMSAYEFQALPYFQWIPEVVIRGRHLRGVAA  133 (420)
T ss_dssp             SSEEEEEETTEEEEEECHHHHHHHCTTCEEEECC-SEESSCCCEEEEESSCCHHHHHHCHHHHTSHHHHHHHTTCCHHHH
T ss_pred             eccEEEEECCEEEEecCcccccccCCCCeeecCC-eEECCCCEecCcCcchhhhhhccCCHHHHHHHhhhhhhhccCHHH
Confidence            4688999999999999753211001356899999 999999999999997641       1111              01


Q ss_pred             hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCcc----chHH----HHHHHHcC
Q 013050           61 FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY----NASA----LEALLNAG  132 (450)
Q Consensus        61 ~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~g  132 (450)
                      .....+.++++|||++++++ +.      ...+..   .... ..++.............    ..+.    ++.+.+.+
T Consensus       134 ~~~~~~~~l~~GvTtv~d~~-~~------~~~~~~---~~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (420)
T 2imr_A          134 AQAGADTLTRLGAGGVGDIV-WA------PEVMDA---LLAR-EDLSGTLYFEVLNPFPDKADEVFAAARTHLERWRRLE  202 (420)
T ss_dssp             HHHHHHHHHHTTCCCEEEEE-CS------HHHHHH---HHTC-TTCCEEEEEEECBCCGGGHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCcEEEEEcc-CC------HHHHHH---HHHh-cCcEEEEEeeecCCCchhhHHHHHHHHHHHHHHhccc
Confidence            13345688999999999986 21      222221   1222 12222211111111111    1122    22222322


Q ss_pred             CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC-ChhhhhhhhhhccCc----------CCccccccccC
Q 013050          133 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE-MEKGSERHVKLEDDT----------LDTRSYSTYLK  201 (450)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~  201 (450)
                      ...++.+..+.   ..+..+.+.++++++.|+++|++|.+|+. +...+...+...+..          ..... ....+
T Consensus       203 ~~~i~~~~~~~---~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~  278 (420)
T 2imr_A          203 RPGLRLGLSPH---TPFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTELEMFRTGGGPLWDNRMPALYPHTLAE-VIGRE  278 (420)
T ss_dssp             BTTEEEEEEEC---CSSSBCHHHHHHHHHHHHHHTCCBEEEESCSHHHHHHHHHSCSTTGGGSCGGGSCSSHHH-HHTSC
T ss_pred             CCceEEEecCC---cCCCcCHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHhhccccccccccchhhhhhh-hcccc
Confidence            22334444332   22457889999999999999999999995 433333333221100          00000 00000


Q ss_pred             CCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCce
Q 013050          202 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF  281 (450)
Q Consensus       202 ~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~  281 (450)
                      ..+...   .++.+.+... .   . ......|+.|++.  +.   ++.+++.|+.  +..||......       +   
T Consensus       279 ~~~~~~---~~~~~~~~g~-l---~-~~~~i~H~~~l~~--~~---i~~l~~~g~~--~~~~p~~~~~~-------~---  333 (420)
T 2imr_A          279 PGPDLT---PVRYLDELGV-L---A-ARPTLVHMVNVTP--DD---IARVARAGCA--VVTCPRSNHHL-------E---  333 (420)
T ss_dssp             CCTTCC---HHHHHHHHTC-G---G-GCCEEEECCSCCH--HH---HHHHHHHTCC--EEECHHHHHHT-------T---
T ss_pred             ccCCCC---HHHHHHHcCC-C---C-CCeEEEecCcCCH--HH---HHHHHHcCCe--EEECHHHHHHh-------c---
Confidence            011000   1122111110 0   0 0023345555442  44   4444444644  44477643211       0   


Q ss_pred             EEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHH
Q 013050          282 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLAS  360 (450)
Q Consensus       282 ~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~  360 (450)
                      ...++         +.++++.|+.+++|||+.+.....               ..    +..+..... ..++|++++++
T Consensus       334 ~~~~~---------l~~~~~~Gv~~~lgtD~~~~~~~~---------------~~----~~~~~~~~~~~~~ls~~~al~  385 (420)
T 2imr_A          334 CGTFD---------WPAFAAAGVEVALGTDSVASGETL---------------NV----REEVTFARQLYPGLDPRVLVR  385 (420)
T ss_dssp             CCCCC---------HHHHHHTTCCEEECCCCHHHHSCS---------------CT----HHHHHHHHHHCTTSCHHHHHH
T ss_pred             cCCCC---------HHHHHHCCCeEEEECCCCccCCCC---------------CH----HHHHHHHHhcCCCCCHHHHHH
Confidence            01121         335688999999999974321000               00    111111112 25899999999


Q ss_pred             HHhhchhHHhCC-CCCCccccCCCccEEEEeCCC
Q 013050          361 WWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEA  393 (450)
Q Consensus       361 ~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~  393 (450)
                      ++|.|||++||+ +++|+|++||+||| |+|.++
T Consensus       386 ~aT~n~A~~lgl~~~~GsL~~Gk~ADl-vvd~~~  418 (420)
T 2imr_A          386 AAVKGGQRVVGGRTPFLRRGETWQEGF-RWELSR  418 (420)
T ss_dssp             HHHHHHHHHHC--CCCCSTTSBCCGGG-BGGGCC
T ss_pred             HHHHHHHHHhCCCCCceeeCCCCccCE-EEECCC
Confidence            999999999999 66999999999999 778664

>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10

Probab=99.95  E-value=6.8e-27  Score=223.14  Aligned_cols=80  Identities=25%  Similarity=0.316  Sum_probs=64.8

Q ss_pred             cCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCC
Q 013050          330 AWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHP  408 (450)
Q Consensus       330 ~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~  408 (450)
                      ..++..+....+...+..+. ..++|++++++++|.|||++||+++.|+|++|+.|||+++|.+                
T Consensus       296 ~~g~~~g~~~~l~~~l~~~~~~~~~~~~~~l~~~T~~~A~~lgl~~~G~i~~G~~ADlv~~d~~----------------  359 (376)
T 1o12_A          296 EDGTLAGSTLFFSQAVKNFRKFTGCSITELAKVSSYNSCVELGLDDRGRIAEGTRADLVLLDED----------------  359 (376)
T ss_dssp             TTSCBCCBCCCHHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTCTTSSCCSTTSBCCEEEECTT----------------
T ss_pred             CCCcccccccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCccCCCCCcCCEEEECCC----------------
Confidence            34455555556666665554 4789999999999999999999943599999999999999955                


Q ss_pred             CccccCCceEeeEEEEEEECCeEEEecC
Q 013050          409 SISAYLGRRLSGKVLATISRGNLVYKEG  436 (450)
Q Consensus       409 ~~~~~~~~~~~~~v~~v~v~G~~v~~~g  436 (450)
                                 .+|..||++|++||++|
T Consensus       360 -----------~~v~~v~~~G~~v~~~~  376 (376)
T 1o12_A          360 -----------LNVVMTIKEGEVVFRSR  376 (376)
T ss_dssp             -----------CCEEEEEETTEEEEEC-
T ss_pred             -----------CCEEEEEECCEEEeecC
Confidence                       27899999999999885

>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*

Probab=99.94  E-value=3.3e-26  Score=226.30  Aligned_cols=251  Identities=17%  Similarity=0.089  Sum_probs=148.9

Q ss_pred             HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCceEEEEeccccCCCccchHHHHHHHH-------cCCcEE
Q 013050           65 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA-EKRIYVDVGFWGGLVPENAYNASALEALLN-------AGVLGL  136 (450)
Q Consensus        65 ~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~  136 (450)
                      .+.+.+.|||++.++.. .      ...+..+.+.. +....+++..+...     +..+.+.+...       ..+.++
T Consensus       228 ~~~~~~~GiTsv~d~~~-~------~~~~~~~~~l~~~g~l~~rv~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~gv  295 (534)
T 3icj_A          228 QEHLLSLGVHSVGFMSV-G------EKALKALFELEREGRLKMNVFAYLSP-----ELLDKLEELNLGKFEGRRLRIWGV  295 (534)
T ss_dssp             HHHHHHTTEEEEEEEEE-C------HHHHHHHHHHHHTTCCCSEEEEEECG-----GGHHHHHHHTCCSEECSSEEEEEE
T ss_pred             HHHHHhCCCEEEEeCCC-C------HHHHHHHHHHHhCCCCcEEEEEecCH-----HHHHHHHHhccccCCCCcEEEEeE
Confidence            44677899999999851 1      23333333322 24456666654321     22223332211       114466


Q ss_pred             EEeccc----------------CCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcccccccc
Q 013050          137 KSFMCP----------------SGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL  200 (450)
Q Consensus       137 ~~~~~~----------------~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (450)
                      |.+..-                ++..+.+..+.++++++++.|+++|++|.+|+...                       
T Consensus       296 K~~~DG~~~~~tA~l~~pY~d~~~~~g~~~~~~e~l~~~v~~A~~~G~~v~~Ha~gd-----------------------  352 (534)
T 3icj_A          296 KLFVDGSLGARTALLSEPYTDNPTTSGELVMNKDEIVEVIERAKPLGLDVAVHAIGD-----------------------  352 (534)
T ss_dssp             EEESCCCTTTTCSCCSSCBTTBTTCCCCCSSCHHHHHHHHHHHTTTTCEEEEEECSH-----------------------
T ss_pred             EEEEeCCCCccchhhcCCccCCCCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEcCh-----------------------
Confidence            665321                11234466799999999999999999999999542                       


Q ss_pred             CCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCc
Q 013050          201 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR  280 (450)
Q Consensus       201 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~  280 (450)
                               ..++.+++..++.       +.+..+.|+..  -+.+.++.+++.|+.++.  +|.+...+. ....    
T Consensus       353 ---------~ai~~~l~a~~~~-------~~r~~ieH~~~--~~~e~i~~la~~gv~~~~--~P~~~~~~~-~~~~----  407 (534)
T 3icj_A          353 ---------KAVDVALDAFEEA-------EFSGRIEHASL--VRDDQLERIKELKVRISA--QPHFIVSDW-WIVN----  407 (534)
T ss_dssp             ---------HHHHHHHHHHHHH-------TCCCEEEECCB--CCHHHHHHHHHHTCEEEE--CTTHHHHCT-THHH----
T ss_pred             ---------HHHHHHHHHHHhc-------cCCCEEEECCC--CCHHHHHHHHHcCCeEEE--ccccccchh-HHHH----
Confidence                     2356666666654       35567788775  344566677777765444  676543211 0000    


Q ss_pred             eEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHH--HHHhcCCCHHHH
Q 013050          281 FKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS--YGRKYGVTLEQL  358 (450)
Q Consensus       281 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~gls~~~a  358 (450)
                       ...+  ........+..+++. +.+++|||+. ..+...+                .........  +..+.++|++++
T Consensus       408 -~lg~--~r~~~~~p~~~l~~~-v~valGSD~p-~~~~~p~----------------~~~~~av~r~~~~~~~~ls~~ea  466 (534)
T 3icj_A          408 -RVGE--ERAKWAYRLKTLSSI-TKLGFSTDSP-IEPADPW----------------VSIDAAVNRYVVDPGERVSREEA  466 (534)
T ss_dssp             -HHHH--HHGGGBTCHHHHHHH-SCEEECCTTT-TSCCCHH----------------HHHHHHHHCCSSCGGGCCCHHHH
T ss_pred             -hhCH--HHHhccHHHHHHHHh-CCEEeecCCC-CCCCCHH----------------HHHHHHHhccccCcccCCCHHHH
Confidence             0000  000011234566778 9999999963 2111110                000001100  123568999999


Q ss_pred             HHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCcee
Q 013050          359 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE  396 (450)
Q Consensus       359 l~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~  396 (450)
                      |+++|.|||+++|++++|+|+|||.|||||+|.|+...
T Consensus       467 L~~~T~~~A~~lg~e~~GsLe~Gk~ADlvvld~dpl~~  504 (534)
T 3icj_A          467 LHLYTHGSAQVTLAEDLGKLERGFRAEYIILDRDPLKE  504 (534)
T ss_dssp             HHHTTHHHHHHTTCTTCSCCSTTSBCCEEEESSCTTC-
T ss_pred             HHHHHHHHHHHhCCCCCeEECCCCCcCEEEECCChhhc
Confidence            99999999999999778999999999999999887443

>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}

Probab=99.94  E-value=2.4e-25  Score=214.47  Aligned_cols=102  Identities=15%  Similarity=0.074  Sum_probs=72.3

Q ss_pred             HHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CC
Q 013050          296 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VS  374 (450)
Q Consensus       296 l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~-~~  374 (450)
                      ...+...|..+.+++|..+......                     ...+ .....++|++|+|+++|.|||++||+ ++
T Consensus       311 ~~~~~~~g~~~~~g~d~~~~~~~~~---------------------~~~~-~~~~~gls~~eal~~~T~~pA~~lgl~~~  368 (426)
T 3mkv_A          311 IEIMKRAGVKMGFGTDLLGEAQRLQ---------------------SDEF-RILAEVLSPAEVIASATIVSAEVLGMQDK  368 (426)
T ss_dssp             HHHHHHHTCCBCCCCCCCGGGGGGT---------------------THHH-HHHHTTSCHHHHHHHTTHHHHHHTTCBTT
T ss_pred             hHHhhhcCceeeeccCCcccccchH---------------------HHHH-HHHHhCCCHHHHHHHHHHHHHHHhCCCCC
Confidence            3556667888889999653321110                     0111 12356899999999999999999999 77


Q ss_pred             CCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050          375 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK  434 (450)
Q Consensus       375 ~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~  434 (450)
                      +|+|+|||.|||||||.||..++.   .+....            .+|+.||++||+|+.
T Consensus       369 ~Gsi~~G~~ADlvvlD~dPl~di~---~~~~~~------------~~v~~Vi~~G~vv~~  413 (426)
T 3mkv_A          369 LGRIVPGAHADVLVVDGNPLKSVD---CLLGQG------------EHIPLVMKDGRLFVN  413 (426)
T ss_dssp             BSSCCTTSBCCEEEESSCTTTCST---TTCSSS------------TTCCEEEETTEEEEE
T ss_pred             cceeCCCCcceEEEECCChHHhHH---HHhCCC------------CCccEEEECCEEEEC
Confidence            899999999999999988643331   111111            268899999998764

>4ep8_C Urease subunit alpha; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1ef2_A* 4epb_C* 4epd_C* 4epe_C* 1ejx_C* 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1a5k_C 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1a5m_C 1a5n_C 1ejr_C* 1a5l_C 1a5o_C 1fwa_C* ...

Probab=99.93  E-value=9.4e-27  Score=234.31  Aligned_cols=358  Identities=17%  Similarity=0.157  Sum_probs=182.7

Q ss_pred             cceeEEEeCCEEEEeccCCCCC-------CCCCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCce
Q 013050            2 CKRAVEIKEGNIISIVSEEDWP-------RNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGIT   74 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~-------~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT   74 (450)
                      +++||+|+||||++||+..++.       ...+++++||++|++|+|||||+|+|+..+...         ......+.+
T Consensus        81 ~kaDIlIkDGrIaaIG~ag~pd~~d~vdl~~~~g~eVIDA~GkiV~PG~ID~HvH~~~~~~~---------~~a~~~~~~  151 (566)
T 4ep8_C           81 VKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIHWICPQQA---------EEALVSGVT  151 (566)
T ss_dssp             EEEEEEEETTEEEEEECEECTTTCSSCCEECCTTCEEEECTTCEEEECEEEEEEECSCTTHH---------HHHHHHTEE
T ss_pred             EEeEEEEECCEEEEeecCCCcccccccccccCCCCEEEECCCCEEEcCEEEecccccCCCcc---------chhhhhhHH
Confidence            5799999999999999743221       112578999999999999999999999876422         122334444


Q ss_pred             EEEeCCCCCC-----CCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCC
Q 013050           75 TLIDMPLNSD-----PSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFP  149 (450)
Q Consensus        75 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  149 (450)
                      +.........     .....................+++..++......   ......+...++.+++.+..+       
T Consensus       152 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~g~~~~~~~-------  221 (566)
T 4ep8_C          152 TMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGNVSQ---PDALREQVAAGVIGLKIHEDW-------  221 (566)
T ss_dssp             EEEEECSSSSHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSC---HHHHHHHHHHTCSEEEEEGGG-------
T ss_pred             HHhhCceEEEEecCCCCCchHHHHHHHHHHhccccceeeeeeccccccc---chhhHHHhhhccccccccccc-------
Confidence            4443210000     0111122222222333445567777766544433   345666677888888886544       


Q ss_pred             CCCHHHHHHHHHHHHhcCCcEEEecCChhhhh---hhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCC
Q 013050          150 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSE---RHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG  226 (450)
Q Consensus       150 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~  226 (450)
                      ......+......+...+....+|........   ...........    ..+....+.......+.+....+...    
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~----  293 (566)
T 4ep8_C          222 GATPAAIDCALTVADEMDIQVALHSDTLNESGFVEDTLAAIGGRTI----HTFHTEGAGGGHAPDIITACAHPNIL----  293 (566)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCE----EETTTTSTTSSSTTTGGGGGGCTTEE----
T ss_pred             cccchhhhhHhHHHHHhcchhhhhhhhHHHHHHHHhhHhhccCccc----cccccccchhHHHHHHHHHHHHHhhc----
Confidence            34566777788888889999999985543311   11110000000    00000000000000000110000000    


Q ss_pred             CCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCee
Q 013050          227 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID  306 (450)
Q Consensus       227 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  306 (450)
                         ..+.+..|.... ...+......         ...+++..+.....   ......   .........+..+..|...
T Consensus       294 ---~~~~~~~~~~~~-~~~~e~~~~~---------~~~h~l~~~~~~~~---~~~~~~---~~~~~~~~~~~l~~~G~~~  354 (566)
T 4ep8_C          294 ---PSSTNPTLPYTL-NTIDEHLDML---------MVCHHLDPDIAEDV---AFAESR---IRRETIAAEDVLHDLGAFS  354 (566)
T ss_dssp             ---EEECSTTSSCBT-THHHHHHHHH---------HHHHTCCTTCHHHH---HHHHHH---CCHHHHHHHHHHHHHTSSC
T ss_pred             ---CCceeehhHHHH-HHhhcccceE---------EEeecccCChhhHH---hhccCC---CcccchHHHHHHHhCCCcc
Confidence               000111111111 1111111110         01112211110000   000000   0112233345566679999


Q ss_pred             EEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHH-HHHHhcCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCc
Q 013050          307 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW-SYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHA  384 (450)
Q Consensus       307 ~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~A  384 (450)
                      .+++|+.+.....+..     ...+.+.......+..+. ......++|++++++++|+|||++||+ +++|+|++||+|
T Consensus       355 ~i~sD~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~gls~~eal~~aTiNPAralGL~d~iGSIevGK~A  429 (566)
T 4ep8_C          355 LTSSDSQAMGRVGEVI-----LRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEVGSIEVGKLA  429 (566)
T ss_dssp             EECCCTTSSSCTTCHH-----HHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBC
T ss_pred             eEeecccccccccccc-----cccCCCCchHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhCCCCCCcCCCCCCCC
Confidence            9999988765332210     000000000000000000 001233589999999999999999999 789999999999


Q ss_pred             cEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEe
Q 013050          385 DLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK  434 (450)
Q Consensus       385 Dlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~  434 (450)
                      ||||||++..         -               .++.+|+++|++||-
T Consensus       430 DLVL~Dp~~f---------~---------------vkP~~v~~~G~iv~a  455 (566)
T 4ep8_C          430 DLVVWSPAFF---------G---------------VKPATVIKGGMIAIA  455 (566)
T ss_dssp             CEEEECGGGT---------T---------------TSCSEEEETTEEEEE
T ss_pred             CEEEECcccc---------C---------------CCeeEEeeCCEEEEc
Confidence            9999996631         0               156799999999993

>3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian}

Probab=99.31  E-value=1.1e-12  Score=94.74  Aligned_cols=54  Identities=22%  Similarity=0.303  Sum_probs=43.6

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCCCC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRT   56 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~   56 (450)
                      .++|+|+||+|++|++..+.+......+++|++|++|+|||||+|+|+..+...
T Consensus        23 ~~~i~I~~g~I~~ig~~~~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~p~~~   76 (81)
T 3ggm_A           23 VSAIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLNDSHIHVIRGLEH   76 (81)
T ss_dssp             ESEEEEETTEEEEEESGGGGGGCCTTCEEEECTTCEEEECCCCTTEEEECCCC-
T ss_pred             ccEEEEECCEEEEEeCchHhcccCCCCEEEECCCCEEeeCeEeeeeCCCCcccc
Confidence            468999999999999865432222467899999999999999999999887643

>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3

Probab=99.14  E-value=3.6e-09  Score=96.79  Aligned_cols=255  Identities=16%  Similarity=0.147  Sum_probs=135.1

Q ss_pred             cceeeccccCCCCCCc----------ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEe
Q 013050           42 GLIDVHAHLDDPGRTE----------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW  111 (450)
Q Consensus        42 G~iD~H~H~~~~~~~~----------~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (450)
                      |+||+|+|+..+...+          .+......+.+.++|+|++++.+ .. +.......+....+..    .+++...
T Consensus         6 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~iv~~~-~~-~~~~~~~~~~~~~~~~----~~~v~~~   79 (291)
T 1bf6_A            6 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMT-NR-YMGRNAQFMLDVMRET----GINVVAC   79 (291)
T ss_dssp             SEEEEEECSSEECHHHHTCGGGEECCHHHHHHHHHHHHHTTEEEEEECC-CG-GGTCCHHHHHHHHHHH----CCEEEEE
T ss_pred             ceeeeccCeecCCcccccCCCcccCCHHHHHHHHHHHHHcCCCEEEecC-CC-cCCCCHHHHHHHHHhc----CCeEEEe
Confidence            9999999996432110          01233455677889999999886 22 1112233333332222    1233333


Q ss_pred             ccc-----cCC-----Cccch-HHHHHHHHcCC-------cEEEE-ecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEE
Q 013050          112 GGL-----VPE-----NAYNA-SALEALLNAGV-------LGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV  172 (450)
Q Consensus       112 ~~~-----~~~-----~~~~~-~~~~~~~~~g~-------~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~  172 (450)
                      .++     .+.     +.+.+ +.+.+.+..|+       ..+.. ...+.   .......+.+++.++.|+++|++|.+
T Consensus        80 ~G~~~~~~hP~~~~~~~~~~l~~~~~~~l~~gi~~~~~~~~~iGe~gld~~---~~~~~~~~~~~~~~~~a~~~~~pv~i  156 (291)
T 1bf6_A           80 TGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGTSEG---KITPLEEKVFIAAALAHNQTGRPIST  156 (291)
T ss_dssp             ECCCCGGGCCTHHHHSCHHHHHHHHHHHHHTCSTTSSCCEEEEEEEECBTT---BCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred             eccccCccCcHhhhcCCHHHHHHHHHHHHHhccCCcCcceeeEEEEecCCC---CCCHHHHHHHHHHHHHHHHHCCeEEE
Confidence            233     121     11111 23333344442       12211 11111   11112235678899999999999999


Q ss_pred             ecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHH
Q 013050          173 HAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAK  252 (450)
Q Consensus       173 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  252 (450)
                      |+.....                                ..+.++++++.  +  .+..++.+.|++.. .+.+.++++.
T Consensus       157 H~~~~~~--------------------------------~~~~~~~l~~~--~--~~~~~~~i~H~~~~-~~~~~~~~~~  199 (291)
T 1bf6_A          157 HTSFSTM--------------------------------GLEQLALLQAH--G--VDLSRVTVGHCDLK-DNLDNILKMI  199 (291)
T ss_dssp             ECGGGCS--------------------------------HHHHHHHHHHT--T--CCGGGEEECCCCSS-CCHHHHHHHH
T ss_pred             eCCCCCC--------------------------------hHHHHHHHHHc--C--CCchhEEEECCCCC-CCHHHHHHHH
Confidence            9942110                                01334455443  0  11346788999643 5567778887


Q ss_pred             hCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCC--eeEEcCCCCCCChhhhcccCCCcccc
Q 013050          253 TNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKA  330 (450)
Q Consensus       253 ~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~~~gtD~~~~~~~~~~~~~~~~~~~  330 (450)
                      +.|..+.+......           .     .++  .......++++++.+.  .++++||.. ......         .
T Consensus       200 ~~G~~i~~~~~~~~-----------~-----~~~--~~~~~~~~~~~~~~~~~dril~~TD~p-~~~~~~---------~  251 (291)
T 1bf6_A          200 DLGAYVQFDTIGKN-----------S-----YYP--DEKRIAMLHALRDRGLLNRVMLSMDIT-RRSHLK---------A  251 (291)
T ss_dssp             HTTCEEEECCTTCT-----------T-----TSC--HHHHHHHHHHHHHTTCGGGEEECCCCC-SGGGSG---------G
T ss_pred             HCCCEEEEccCccc-----------C-----CCC--HHHHHHHHHHHHHhCCCCeEEEcCCCC-CCccch---------h
Confidence            88876665421100           0     011  1234455677777773  468999953 321111         1


Q ss_pred             CCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhC
Q 013050          331 WGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG  371 (450)
Q Consensus       331 ~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg  371 (450)
                      .++ .+....+...+..+...|+|.+++.++.|.||+++|+
T Consensus       252 ~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~N~~rl~~  291 (291)
T 1bf6_A          252 NGG-YGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQFFQ  291 (291)
T ss_dssp             GTS-CCTTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHCC
T ss_pred             cCC-CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHhHHHHhC
Confidence            112 2333334444455566789999999999999999885

>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...

Probab=99.07  E-value=8.4e-09  Score=95.75  Aligned_cols=277  Identities=16%  Similarity=0.141  Sum_probs=132.9

Q ss_pred             cceeeccccCCCCCCc-----c-----cchHH----HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceE
Q 013050           42 GLIDVHAHLDDPGRTE-----W-----EGFPS----GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD  107 (450)
Q Consensus        42 G~iD~H~H~~~~~~~~-----~-----~~~~~----~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (450)
                      ||||+|+|+...+...     .     ++...    ....+.++|||++++.+ . .....+...+....+.........
T Consensus        16 GliD~H~HL~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~aGV~~iv~~~-~-~~~~~~~~~~~~la~~~~~~i~~~   93 (330)
T 2ob3_A           16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVS-T-FDIGRDVSLLAEVSRAADVHIVAA   93 (330)
T ss_dssp             CSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECC-C-GGGTCCHHHHHHHHHHHTCEEECE
T ss_pred             CCceeeeCeecCCchhccCCCchhhhccCHHHHHHHHHHHHHHcCCCEEEeCC-C-CCcCCCHHHHHHHHHHhCCcEEEE
Confidence            9999999997532111     0     12222    25678899999999885 1 111233444444433322122223


Q ss_pred             EEEeccccCC-----Cccch-HHHHHHHHc-------CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEec
Q 013050          108 VGFWGGLVPE-----NAYNA-SALEALLNA-------GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA  174 (450)
Q Consensus       108 ~~~~~~~~~~-----~~~~~-~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~  174 (450)
                      .+.+. ..+.     +.+.+ +.+.+.+..       .+..++....+    .......+.+++.+++|++.|+||.+|.
T Consensus        94 ~G~hp-~~p~~~~~~~~~~l~~~l~~~~~~gi~~~~~k~~aiEiGld~----~~~~~q~~~f~~q~~lA~~~glPv~iH~  168 (330)
T 2ob3_A           94 TGLWF-DPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATTG----KATPFQELVLKAAARASLATGVPVTTHT  168 (330)
T ss_dssp             EECCS-CCCHHHHTCCHHHHHHHHHHHHHTCSTTSCCCCSEEEEECSS----SCCHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred             ecCCc-CCCchhccCCHHHHHHHHHHHHHhhccccccceeEEEEeCCC----CCCHHHHHHHHHHHHHHHHhCCeEEEEC
Confidence            34442 0111     11122 223333322       23333332321    0011223447888999999999999999


Q ss_pred             CChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhC
Q 013050          175 EMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTN  254 (450)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~  254 (450)
                      ....                              .... ++++++++.  +  ....++.+.|+... .+.+..+++.+.
T Consensus       169 ~~~~------------------------------r~a~-e~l~iL~~~--g--~~~~~~~i~H~f~~-~~~e~a~~~~~~  212 (330)
T 2ob3_A          169 AASQ------------------------------RDGE-QQAAIFESE--G--LSPSRVCIGHSDDT-DDLSYLTALAAR  212 (330)
T ss_dssp             CGGG------------------------------THHH-HHHHHHHHT--T--CCGGGEEECSGGGC-CCHHHHHHHHHT
T ss_pred             CCCC------------------------------CCHH-HHHHHHHHc--C--cCcccEEEeCCCCC-CCHHHHHHHHhC
Confidence            4110                              0012 444555543  0  00124457898722 456788888888


Q ss_pred             CCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcC--CeeEEcCCCCCC-Chhh-hcccCCCc--c
Q 013050          255 GDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPT-VPEL-KLLDEGNF--L  328 (450)
Q Consensus       255 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g--~~~~~gtD~~~~-~~~~-~~~~~~~~--~  328 (450)
                      |..+...... ...+....... ...-...++  .......+.++++.+  -.++++||. |. .... ...  |..  .
T Consensus       213 G~~i~~~~~G-~~tf~~~~~~~-~~~~~~~~~--~~~~~~~l~~~~~~~p~drilleTD~-p~~l~~~~~~~--g~~~~~  285 (330)
T 2ob3_A          213 GYLIGLDHIP-YSAIGLEDNAS-ASALLGIRS--WQTRALLIKALIDQGYMKQILVSNDW-TFGFSSYVTNI--MDVMDR  285 (330)
T ss_dssp             TCEEEECCTT-CCCTTCTTCHH-HHHHHCSSC--HHHHHHHHHHHHHTTCGGGEEECCCC-CSEECSSSTTH--HHHHHH
T ss_pred             CCEEEeCCCc-ccccccccccc-ccccccCCC--HHHHHHHHHHHHHhCCCCeEEEeCCC-CCCcccccccC--CCcccc
Confidence            8766554201 00000000000 000000000  012234466777777  456899995 32 1000 000  000  0


Q ss_pred             ccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhC
Q 013050          329 KAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG  371 (450)
Q Consensus       329 ~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg  371 (450)
                      +.++   +....+...+..+.+.|+|++++.++.|.||+++|+
T Consensus       286 n~pn---~~~~~~~~~ia~l~~~G~~~eev~~~~t~N~~rlf~  325 (330)
T 2ob3_A          286 VNPD---GMAFIPLRVIPFLREKGVPQETLAGITVTNPARFLS  325 (330)
T ss_dssp             HCTT---GGGHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHHS
T ss_pred             cCCC---CcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            0000   111122333344555899999999999999999997

>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12

Probab=99.06  E-value=1.9e-08  Score=90.32  Aligned_cols=244  Identities=18%  Similarity=0.113  Sum_probs=126.1

Q ss_pred             ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC----
Q 013050           43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN----  118 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  118 (450)
                      +||+|+|+....+.  .+.......+.++||++++..+ . .  ......+....   .....  +....++.+..    
T Consensus         5 ~iD~H~Hl~~~~~~--~~~~~~l~~~~~~Gv~~~v~~~-~-~--~~~~~~~~~l~---~~~~~--~~~~~G~hP~~~~~~   73 (259)
T 1zzm_A            5 FIDTHCHFDFPPFS--GDEEASLQRAAQAGVGKIIVPA-T-E--AENFARVLALA---ENYQP--LYAALGLHPGMLEKH   73 (259)
T ss_dssp             EEESCBCTTSTTTT--TCHHHHHHHHHHTTEEEEEEEC-C-S--GGGHHHHHHHH---HHCTT--EEEEECCCGGGGGGC
T ss_pred             EEEeeecCCchhhc--cCHHHHHHHHHHcCCCEEEEec-C-C--HHHHHHHHHHH---HhCCC--eEEEEEecccccccC
Confidence            89999999875432  3466777888999999998764 1 1  12233333222   22212  21222222221    


Q ss_pred             -ccchHHHHHHHHc---CCcEEEE-ecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCc
Q 013050          119 -AYNASALEALLNA---GVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT  193 (450)
Q Consensus       119 -~~~~~~~~~~~~~---g~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~  193 (450)
                       ....+.+.++++.   ++.++.. ...+...........+.+...++.|+++|+||.+|+++..               
T Consensus        74 ~~~~~~~l~~~~~~~~~~~~~iGEiGld~~~~~~~~~~q~~~f~~~~~~a~~~~~Pv~iH~~~a~---------------  138 (259)
T 1zzm_A           74 SDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH---------------  138 (259)
T ss_dssp             CHHHHHHHHHHHHHCCSSEEEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESCH---------------
T ss_pred             CHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEecccH---------------
Confidence             1234566665543   3344322 1111100000112345788899999999999999995421               


Q ss_pred             cccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccc
Q 013050          194 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE  273 (450)
Q Consensus       194 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~  273 (450)
                                         +.+++++++..     ...++. .|+.+  ...+.++++.+.|..+..  +.... .    
T Consensus       139 -------------------~~~~~il~~~~-----~~~~~i-~H~~~--g~~~~~~~~~~~g~~i~~--~g~~~-~----  184 (259)
T 1zzm_A          139 -------------------DKLAMHLKRHD-----LPRTGV-VHGFS--GSLQQAERFVQLGYKIGV--GGTIT-Y----  184 (259)
T ss_dssp             -------------------HHHHHHHHHHC-----CTTCEE-ETTCC--SCHHHHHHHHHTTCEEEE--CGGGG-C----
T ss_pred             -------------------HHHHHHHHhcC-----CCCCEE-EEcCC--CCHHHHHHHHHCCCEEEE--Cceee-c----
Confidence                               34555555441     022333 48765  345566666666754443  32110 0    


Q ss_pred             cCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcC
Q 013050          274 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYG  352 (450)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g  352 (450)
                                    ........+.+... .-.++++||+ |......      +    .|.......+......+ ...|
T Consensus       185 --------------~~~~~~~~~~~~~~-~dril~eTD~-P~~~p~~------~----~g~~~~p~~l~~~~~~la~~~g  238 (259)
T 1zzm_A          185 --------------PRASKTRDVIAKLP-LASLLLETDA-PDMPLNG------F----QGQPNRPEQAARVFAVLCELRR  238 (259)
T ss_dssp             --------------TTTCSHHHHHHHSC-GGGEEECCCB-TSSCCTT------C----TTSCCCGGGHHHHHHHHHHHCS
T ss_pred             --------------cccHHHHHHHHhCC-HHHEEEecCC-CCccCCC------C----CCCCCcHHHHHHHHHHHHHHHC
Confidence                          00011111111111 1346799995 4321110      0    01111112344444444 4579


Q ss_pred             CCHHHHHHHHhhchhHHhCC
Q 013050          353 VTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       353 ls~~~al~~aT~~~A~~lg~  372 (450)
                      +|.+++.++.|.|++++|++
T Consensus       239 ~~~e~~~~~~~~Na~rl~~l  258 (259)
T 1zzm_A          239 EPADEIAQALLNNTYTLFNV  258 (259)
T ss_dssp             SCHHHHHHHHHHHHHHHHCC
T ss_pred             cCHHHHHHHHHHHHHHHhCc
Confidence            99999999999999999986

>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}

Probab=99.05  E-value=5.7e-09  Score=94.46  Aligned_cols=243  Identities=14%  Similarity=0.201  Sum_probs=126.2

Q ss_pred             cceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccc-cCC---
Q 013050           42 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL-VPE---  117 (450)
Q Consensus        42 G~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---  117 (450)
                      ++||+|+|+....+.  .+.......+.++||++++..+ ..   ......+....+.........++.++.. ...   
T Consensus         5 ~~iD~H~Hl~~~~~~--~~~~~~l~~~~~~Gv~~~v~~~-~~---~~~~~~~~~l~~~~~~~i~~~~GihP~~~~~~~~~   78 (272)
T 2y1h_A            5 GLVDCHCHLSAPDFD--RDLDDVLEKAKKANVVALVAVA-EH---SGEFEKIMQLSERYNGFVLPCLGVHPVQGLPPEDQ   78 (272)
T ss_dssp             CEEEEEECTTSGGGT--TTHHHHHHHHHHTTEEEEEECC-SS---GGGHHHHHHHHHHTTTTEEEEECCCSBC-------
T ss_pred             cEEEEeeCCCchhhh--cCHHHHHHHHHHCCCCEEEEeC-CC---HHHHHHHHHHHHHCCCCEEEEEEECCCcccccccc
Confidence            599999999765322  3466677888999999999885 21   1223333333222211112223333221 111   


Q ss_pred             ---CccchHHHHHHHH---cCCcEEEEe-cccCCCC-C---CCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhh
Q 013050          118 ---NAYNASALEALLN---AGVLGLKSF-MCPSGIN-D---FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKL  186 (450)
Q Consensus       118 ---~~~~~~~~~~~~~---~g~~~~~~~-~~~~~~~-~---~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~  186 (450)
                         .....+.+.++++   ..+.++... ..+.... .   ......+.+++.+++|+++|+||.+|+++..        
T Consensus        79 ~~~~~~~~~~l~~~~~~~~~~~~~iGE~Gld~~~~~~~~~~~~~~q~~~f~~~~~la~~~~lPv~iH~~~a~--------  150 (272)
T 2y1h_A           79 RSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAG--------  150 (272)
T ss_dssp             CBCCHHHHHHHHHHHHHHGGGCSEEEEEECCCCTTTCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEECTTCH--------
T ss_pred             ccCCHHHHHHHHHHHHhCCCCEEEEEeccCCCccccCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCcH--------
Confidence               1123445555543   234444321 2110000 0   0011245788899999999999999996432        


Q ss_pred             ccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcch
Q 013050          187 EDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY  266 (450)
Q Consensus       187 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~  266 (450)
                                                ..+++++++.      +..++.+ |+.+  ...+.++++.+.|+.+..  ++..
T Consensus       151 --------------------------~~~~~il~~~------~~~~~v~-H~~~--g~~~~~~~~~~~g~~i~~--~g~~  193 (272)
T 2y1h_A          151 --------------------------RPTINLLQEQ------GAEKVLL-HAFD--GRPSVAMEGVRAGYFFSI--PPSI  193 (272)
T ss_dssp             --------------------------HHHHHHHHHT------TCCSEEE-ETCC--SCHHHHHHHHHTTCEEEE--CGGG
T ss_pred             --------------------------HHHHHHHHhC------CCCCEEE-EccC--CCHHHHHHHHHCCCEEEE--CCcc
Confidence                                      2344555543      1235555 7765  344666676667754443  3321


Q ss_pred             hcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcC--CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHH
Q 013050          267 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVT  344 (450)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g--~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  344 (450)
                      .                    ...    .+.+.++..  -.+.++||. |......            |.......+...
T Consensus       194 ~--------------------~~~----~~~~~~~~~~~drll~eTD~-P~~~p~~------------g~~~~p~~l~~~  236 (272)
T 2y1h_A          194 I--------------------RSG----QKQKLVKQLPLTSICLETDS-PALGPEK------------QVRNEPWNISIS  236 (272)
T ss_dssp             G--------------------TCH----HHHHHHHHSCGGGEEECCCT-TSSCSST------------TSCCCGGGHHHH
T ss_pred             c--------------------CcH----HHHHHHHhCCHHHEEEecCC-CCCCCCC------------CCcCcHHHHHHH
Confidence            0                    011    122222222  235899995 3211100            100111123333


Q ss_pred             HHHH-HhcCCCHHHHHHHHhhchhHHhCC
Q 013050          345 WSYG-RKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       345 ~~~~-~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      ...+ ...|+|.+++.++.|.|++++|++
T Consensus       237 ~~~la~~~g~~~e~~~~~~~~N~~~l~~~  265 (272)
T 2y1h_A          237 AEYIAQVKGISVEEVIEVTTQNALKLFPK  265 (272)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence            3333 346999999999999999999998

>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}

Probab=99.02  E-value=2.5e-08  Score=90.09  Aligned_cols=250  Identities=16%  Similarity=0.103  Sum_probs=135.7

Q ss_pred             ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc--C----CceEEEEeccccC
Q 013050           43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--R----IYVDVGFWGGLVP  116 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~  116 (450)
                      |||+|+|+....+.  ++.......+..+||..++..+       ..........+.+..  .    ....++.++....
T Consensus         3 ~iD~H~HL~~~~~~--~d~~~vl~~a~~~gV~~~v~~g-------~~~~~~~~~~~la~~~~~~~~~v~~~~GiHP~~~~   73 (287)
T 3rcm_A            3 LIDIGVNLTNSSFH--DQQAAIVERALEAGVTQMLLTG-------TSLAVSEQALELCQQLDASGAHLFATAGVHPHDAK   73 (287)
T ss_dssp             EEEEEECTTCGGGT--TCHHHHHHHHHHTTEEEEEECC-------CSHHHHHHHHHHHHHHCTTSSSEEEEECCCGGGGG
T ss_pred             eEEEeecCCchhcc--cCHHHHHHHHHHcCCeEEEEec-------CCHHHHHHHHHHHHhCCCCCceEEEEEEECcCccc
Confidence            89999999865432  4577788899999999998775       123333333333221  1    2233333332222


Q ss_pred             -CCccchHHHHHHHHc-CCcEEEEe-cccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCc
Q 013050          117 -ENAYNASALEALLNA-GVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT  193 (450)
Q Consensus       117 -~~~~~~~~~~~~~~~-g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~  193 (450)
                       ......+.+.++++. .+.++... +.+...........+.+++.+++|+++++||.+|+++..               
T Consensus        74 ~~~~~~~~~l~~l~~~~~vvaIGEiGLD~~~~~~~~~~Q~~~F~~ql~lA~e~~lPv~iH~r~a~---------------  138 (287)
T 3rcm_A           74 AWDTDSERQLRLLLSEPRVRAVGECGLDFNRDFSPRPLQEKALEAQLTLAAQLRLPVFLHERDAS---------------  138 (287)
T ss_dssp             GCCTTHHHHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH---------------
T ss_pred             cCCHHHHHHHHHHhcCCCeEEEEEeeeCCCcccCcHHHHHHHHHHHHHHHHHhCCCEEEEcCCcH---------------
Confidence             123446677777653 34444322 222110000112356788999999999999999996532               


Q ss_pred             cccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccc
Q 013050          194 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE  273 (450)
Q Consensus       194 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~  273 (450)
                                         ..+++++++....    ..+. +.|+.+  .+.+.++++.+.|..+..  +.... ..   
T Consensus       139 -------------------~~~l~il~~~~~~----~~~~-V~H~fs--G~~e~a~~~l~~G~yis~--~g~i~-~~---  186 (287)
T 3rcm_A          139 -------------------ERLLAILKDYRDH----LTGA-VVHCFT--GEREALFAYLDLDLHIGI--TGWIC-DE---  186 (287)
T ss_dssp             -------------------HHHHHHHHTTGGG----CSCE-EECSCC--CCHHHHHHHHHTTCEEEE--CGGGG-CT---
T ss_pred             -------------------HHHHHHHHHcCCC----CCeE-EEEeCC--CCHHHHHHHHHCCcEEEE--Cchhc-cc---
Confidence                               4556666643110    1123 358765  556677777777765554  32111 00   


Q ss_pred             cCCCCCceEEcCCCCChhhHHHHHHHHhcC--CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-Hh
Q 013050          274 IPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RK  350 (450)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g--~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~  350 (450)
                                   -+...    +.+.++.-  -.+.+.||. |.......      .....|-..-...+......+ ..
T Consensus       187 -------------k~~~~----l~~~v~~ip~drlLlETD~-P~l~p~~~------~~~~rg~~n~P~~l~~v~~~lA~~  242 (287)
T 3rcm_A          187 -------------RRGTH----LHPLVGNIPEGRLMLESDA-PYLLPRSL------RPKPKSGRNEPAFLPEVLREVALH  242 (287)
T ss_dssp             -------------TTCGG----GHHHHTTSCTTSEEECCCT-TSCCCTTC------SSCCTTCCCCGGGHHHHHHHHHHH
T ss_pred             -------------cCHHH----HHHHHHhcCCccEEEeccC-CccCcccc------ccccCCCcCCHHHHHHHHHHHHHH
Confidence                         00011    11222221  236799994 43221110      000012222223355555554 45


Q ss_pred             cCCCHHHHHHHHhhchhHHhCC
Q 013050          351 YGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       351 ~gls~~~al~~aT~~~A~~lg~  372 (450)
                      .|+|.+++.++.|.|+.+++++
T Consensus       243 ~g~s~eev~~~~~~N~~rlf~l  264 (287)
T 3rcm_A          243 RGESAEHTAAHTTATARDFFQL  264 (287)
T ss_dssp             HTSCHHHHHHHHHHHHHHHTTC
T ss_pred             hCcCHHHHHHHHHHHHHHHHCC
Confidence            6999999999999999999998

>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A*

Probab=98.98  E-value=3.5e-08  Score=91.27  Aligned_cols=264  Identities=17%  Similarity=0.181  Sum_probs=129.2

Q ss_pred             cceeeccccCCCCCCc-------c---cchHHH---HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEE
Q 013050           42 GLIDVHAHLDDPGRTE-------W---EGFPSG---TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV  108 (450)
Q Consensus        42 G~iD~H~H~~~~~~~~-------~---~~~~~~---~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (450)
                      ||||+|+|+.......       |   ++....   ...+.++|+|++++.+ .. ........+....+..........
T Consensus        17 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gv~~iv~~~-~~-~~~~~~~~~~~~~~~~~~~v~~~~   94 (314)
T 2vc7_A           17 GFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPT-VM-GLGRDIRFMEKVVKATGINLVAGT   94 (314)
T ss_dssp             CSEESSCBSCBCCHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTTCCEEEECC-CB-TTTCCHHHHHHHHHHHCCEEEECE
T ss_pred             CCcccccccccCcchhcccCcchhhhcccHHHHHHHHHHHHHcCCCEEEecC-CC-CCCcCHHHHHHHHHHcCCeEEEEe
Confidence            9999999997532111       1   112222   3677899999999885 22 112224444333333211111222


Q ss_pred             EEecccc-CCC--ccchHHHHHHHH----cCC--cEE-----EEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEec
Q 013050          109 GFWGGLV-PEN--AYNASALEALLN----AGV--LGL-----KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA  174 (450)
Q Consensus       109 ~~~~~~~-~~~--~~~~~~~~~~~~----~g~--~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~  174 (450)
                      +.+.... ...  ....+.+.+++.    .|+  .++     +....+.   .......+.+++.+++|+++|++|.+|.
T Consensus        95 G~hp~~~~~~~~~~~~~~~l~~~~~~~~~~gige~G~~~g~i~~~ld~~---~~~~~q~~~~~~~~~lA~~~~~pv~iH~  171 (314)
T 2vc7_A           95 GIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKIAADEP---GITKDVEKVIRAAAIANKETKVPIITHS  171 (314)
T ss_dssp             EBCCSSCCCGGGTTCCHHHHHHHHHHHHHTCSSSSSCCCCSEEEECCTT---CSCHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred             ecCCCCCCchhhhccCHHHHHHHHHHHHHhhcccCCCCCCeEEEeecCC---CCCHHHHHHHHHHHHHHHHHCCEEEEeC
Confidence            2222111 001  122444544432    222  221     1112221   1111223457778899999999999999


Q ss_pred             CC--hhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHH
Q 013050          175 EM--EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAK  252 (450)
Q Consensus       175 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~  252 (450)
                      ..  ..                                 ..++++++++.  +  ....++.+.|+... .+.+.++++.
T Consensus       172 ~~~~~~---------------------------------~~~~~~~l~~~--~--~~~~~~~i~H~~~~-~~~~~~~~~~  213 (314)
T 2vc7_A          172 NAHNNT---------------------------------GLEQQRILTEE--G--VDPGKILIGHLGDT-DNIDYIKKIA  213 (314)
T ss_dssp             CTTTTH---------------------------------HHHHHHHHHHT--T--CCGGGEEETTGGGC-CCHHHHHHHH
T ss_pred             CCcccC---------------------------------hHHHHHHHHHc--C--CCcccEEEECCCCC-CCHHHHHHHH
Confidence            41  11                                 12444555543  0  11235667888753 3457777877


Q ss_pred             hCCCcEEEecCcchhcccccccCCCCCceEEcCCCCC-hhhHHHHHHHHhcC--CeeEEcCCCCCCChhhhcccCCCccc
Q 013050          253 TNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD-AANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLK  329 (450)
Q Consensus       253 ~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~g--~~~~~gtD~~~~~~~~~~~~~~~~~~  329 (450)
                      +.|..+....+.. .  +                ... ....+.+.+.+..|  -.++++||.. ..+....  ..++. 
T Consensus       214 ~~G~~i~~~~~~~-~--~----------------~~~~~~~~~~i~~~~~~g~~drilleTD~~-~~~~~~~--~~p~~-  270 (314)
T 2vc7_A          214 DKGSFIGLDRYGL-D--L----------------FLPVDKRNETTLRLIKDGYSDKIMISHDYC-CTIDWGT--AKPEY-  270 (314)
T ss_dssp             HTTCEEEECCTTC-T--T----------------TSCHHHHHHHHHHHHHTTCTTTEEECCCCB-SSBCCGG--GCTTS-
T ss_pred             HcCCEEEEeCCCc-c--c----------------CCCHHHHHHHHHHHHHcCCCCeEEEcCCcc-ccccccc--cchhh-
Confidence            7886555532110 0  0                001 12334455555653  3468999963 1110000  00000 


Q ss_pred             cCCCCc--chhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhC
Q 013050          330 AWGGIS--SLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG  371 (450)
Q Consensus       330 ~~~g~~--~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg  371 (450)
                      .+.|..  +....+......+...|++.+++.++.|.|++++|+
T Consensus       271 ~~~g~~~~~~~~~~~~~~~~l~~~g~~~e~~~~~~~~N~~rlf~  314 (314)
T 2vc7_A          271 KPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS  314 (314)
T ss_dssp             HHHHCTTCSTTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHTC
T ss_pred             hhcCCCCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHHhC
Confidence            000111  112223334444556799999999999999999885

>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12

Probab=98.94  E-value=1.1e-07  Score=85.58  Aligned_cols=241  Identities=19%  Similarity=0.222  Sum_probs=128.3

Q ss_pred             ceeeccccCCCCCCc-ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCc--
Q 013050           43 LIDVHAHLDDPGRTE-WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA--  119 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~-~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  119 (450)
                      +||+|+|+..+.+.. ..+.....+.+.++||+.++..+  .     .........+.......  +....++.+...  
T Consensus         3 ~iD~H~Hl~~~~~~~~~~~~~~~l~~~~~~Gv~~~v~~~--~-----~~~~~~~~~~~~~~~p~--~~~~~g~hP~~~~~   73 (265)
T 1yix_A            3 LVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVA--T-----TLPSYLHMRDLVGERDN--VVFSCGVHPLNQND   73 (265)
T ss_dssp             EEEEEECGGGSCTTTTCSSHHHHHHHHHHTTEEEEEECC--S-----SHHHHHHHHHHHCSCTT--EEEEECCCTTCCSS
T ss_pred             EEEEeeCCCchhhcccccCHHHHHHHHHHCCCCEEEEeC--C-----CHHHHHHHHHHHHHCCC--eEEEEEeCCCcccc
Confidence            899999997654311 23466778888999999988764  1     12333333333333222  222223333222  


Q ss_pred             -cchHHHHHHHHc------CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCC
Q 013050          120 -YNASALEALLNA------GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD  192 (450)
Q Consensus       120 -~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~  192 (450)
                       ...+.+.++++.      |..|++.+..+.    ......+.+...++.|+++|++|.+|+....              
T Consensus        74 ~~~~~~l~~~~~~~~~~~iGe~Gl~~~~~~~----~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~--------------  135 (265)
T 1yix_A           74 PYDVEDLRRLAAEEGVVALGETGLDYYYTPE----TKVRQQESFIHHIQIGRELNKPVIVHTRDAR--------------  135 (265)
T ss_dssp             CCCHHHHHHHHTSTTEEEEEEEEEECTTCSS----CHHHHHHHHHHHHHHHHHHTCCEEEEEESCH--------------
T ss_pred             cchHHHHHHHhccCCeEEEEccccCCCcCCC----ChHHHHHHHHHHHHHHHHhCCCEEEEecCch--------------
Confidence             135677776653      333444322110    0123356788899999999999999995321              


Q ss_pred             ccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhccccc
Q 013050          193 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE  272 (450)
Q Consensus       193 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~  272 (450)
                                          ..+++++++.+    .++.++.+ |+..  ...+.++++.+.|+  ++.++.... .   
T Consensus       136 --------------------~~~~~~l~~~~----~p~~~~v~-H~~~--~~~~~~~~~~~~g~--~~~~sg~~~-~---  182 (265)
T 1yix_A          136 --------------------ADTLAILREEK----VTDCGGVL-HCFT--EDRETAGKLLDLGF--YISFSGIVT-F---  182 (265)
T ss_dssp             --------------------HHHHHHHHHTT----GGGTCEEE-TTCC--SCHHHHHHHHTTTC--EEEECGGGG-S---
T ss_pred             --------------------HHHHHHHHhcC----CCCCCEEE-EcCC--CCHHHHHHHHHCCc--EEEECCccc-c---
Confidence                                23444444420    11344544 8765  33455566655554  444343210 0   


Q ss_pred             ccCCCCCceEEcCCCCChhhHHHHHHHHhc-C-CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh
Q 013050          273 EIPDGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK  350 (450)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  350 (450)
                                     ....   .+.+.++. + -.++++||+ |........          |.......+......+.+
T Consensus       183 ---------------~~~~---~~~~~~~~~~~drll~~TD~-P~~~~~~~~----------g~~~~~~~l~~~~~~l~~  233 (265)
T 1yix_A          183 ---------------RNAE---QLRDAARYVPLDRLLVETDS-PYLAPVPHR----------GKENQPAMVRDVAEYMAV  233 (265)
T ss_dssp             ---------------TTCH---HHHHHHHHSCGGGEEECCCB-TSCCCTTCT----------TSCCCGGGHHHHHHHHHH
T ss_pred             ---------------CchH---HHHHHHHhCChHHEEEecCC-CCCCCcccC----------CCCCchHHHHHHHHHHHH
Confidence                           0011   12222332 2 246899995 332111100          111111223444444444


Q ss_pred             -cCCCHHHHHHHHhhchhHHhCC
Q 013050          351 -YGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       351 -~gls~~~al~~aT~~~A~~lg~  372 (450)
                       .++|.+++.++.+.|+++++++
T Consensus       234 ~~~~~~~~~~~i~~~Na~rl~~l  256 (265)
T 1yix_A          234 LKGVAVEELAQVTTDNFARLFHI  256 (265)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHTTC
T ss_pred             HhCcCHHHHHHHHHHHHHHHhCc
Confidence             6899999999999999999998

>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12

Probab=98.88  E-value=3.2e-07  Score=82.47  Aligned_cols=248  Identities=14%  Similarity=0.071  Sum_probs=126.9

Q ss_pred             ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC----
Q 013050           43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN----  118 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  118 (450)
                      +||+|+|+....+.  .+.....+.+.++||++++..+ .      .........+.......+  ....++.+..    
T Consensus         5 ~iD~H~Hl~~~~~~--~~~~~~l~~~~~~Gv~~~v~~~-~------~~~~~~~~~~l~~~~~~i--~~~~G~hP~~~~~~   73 (264)
T 1xwy_A            5 MFDIGVNLTSSQFA--KDRDDVVACAFDAGVNGLLITG-T------NLRESQQAQKLARQYSSC--WSTAGVHPHDSSQW   73 (264)
T ss_dssp             CEEEEECTTSGGGT--TTHHHHHHHHHHTTCCEEEECC-C------SHHHHHHHHHHHHHSTTE--EEEECCCGGGGGGC
T ss_pred             EEEEeeCCCChhhc--cCHHHHHHHHHHCCCCEEEEeC-C------CHHHHHHHHHHHHhCCCE--EEEEEECCcccccC
Confidence            89999999765322  3466677788999999998875 1      123333333333322222  1122222221    


Q ss_pred             -ccchHHHHHHHHc-CCcEEEEe-cccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050          119 -AYNASALEALLNA-GVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS  195 (450)
Q Consensus       119 -~~~~~~~~~~~~~-g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~  195 (450)
                       ....+.+.++++. ++.++... +.+...........+.+++.++.|+++|+||.+|+.+..                 
T Consensus        74 ~~~~~~~l~~~~~~~~~~~iGE~Gld~~~~~~~~~~q~~~f~~~l~~a~~~~lpv~iH~~~a~-----------------  136 (264)
T 1xwy_A           74 QAATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAH-----------------  136 (264)
T ss_dssp             CHHHHHHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH-----------------
T ss_pred             CHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCcHHHHHHHHHHHHHHHHHhCCcEEEEcCCch-----------------
Confidence             1234556666553 33333221 111100000011224588899999999999999995321                 


Q ss_pred             cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050          196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP  275 (450)
Q Consensus       196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~  275 (450)
                                       ..+++++++...    +..++. .|+.+  ...+.++++.+.|+.+..  +.. ..       
T Consensus       137 -----------------~~~~~il~~~~~----~~~~~v-~H~~~--g~~~~~~~~~~~g~yi~~--~g~-~~-------  182 (264)
T 1xwy_A          137 -----------------ERFMTLLEPWLD----KLPGAV-LHCFT--GTREEMQACVAHGIYIGI--TGW-VC-------  182 (264)
T ss_dssp             -----------------HHHHHHHGGGGG----GSSCEE-ECSCC--CCHHHHHHHHHTTCEEEE--CGG-GG-------
T ss_pred             -----------------HHHHHHHHhcCC----CCCcEE-EEccC--CCHHHHHHHHHCCeEEEE--Ccc-cc-------
Confidence                             344555554310    023444 38765  345566666666654443  321 10       


Q ss_pred             CCCCceEEcCCCCChhhHHHHHHHHhcCC--eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcC
Q 013050          276 DGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYG  352 (450)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g  352 (450)
                                ....   ...+.+.++...  .++++||+ |......+.+  .+   .++... ...+......+ ...|
T Consensus       183 ----------~~~~---~~~l~~~~~~~~~drll~eTD~-P~~~~~~~~~--~~---~g~~n~-p~~~~~~~~~~a~~~g  242 (264)
T 1xwy_A          183 ----------DERR---GLELRELLPLIPAEKLLIETDA-PYLLPRDLTP--KP---SSRRNE-PAHLPHILQRIAHWRG  242 (264)
T ss_dssp             ----------CTTT---SHHHHHHGGGSCGGGEEECCCT-TSCCCTTCTT--CC---CSSCCC-GGGHHHHHHHHHHHHT
T ss_pred             ----------CCcC---cHHHHHHHHhCCHHHEEEecCC-CCcCcccccc--cc---CCCCCc-hHHHHHHHHHHHHHHC
Confidence                      0000   112333344322  46899995 4321110000  00   001111 12233444443 4568


Q ss_pred             CCHHHHHHHHhhchhHHhCC
Q 013050          353 VTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       353 ls~~~al~~aT~~~A~~lg~  372 (450)
                      +|.+++.++.+.|+++++++
T Consensus       243 ~~~e~~~~~~~~Na~rl~~l  262 (264)
T 1xwy_A          243 EDAAWLAATTDANVKTLFGI  262 (264)
T ss_dssp             CCHHHHHHHHHHHHHHHHCC
T ss_pred             cCHHHHHHHHHHHHHHHhCc
Confidence            99999999999999999987

>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}

Probab=98.83  E-value=1.9e-07  Score=85.51  Aligned_cols=258  Identities=14%  Similarity=0.040  Sum_probs=130.2

Q ss_pred             cceeeccccCCCCCCc--------ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecc
Q 013050           42 GLIDVHAHLDDPGRTE--------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG  113 (450)
Q Consensus        42 G~iD~H~H~~~~~~~~--------~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (450)
                      .+||+|+|+..+.+..        .++.......+.++||++++..+       ..........+.......  +....+
T Consensus         2 ~~iD~H~Hl~~~~~~~~~~~~~~h~~d~~~vl~~~~~~GV~~~v~~~-------~~~~~~~~~~~la~~~~~--v~~~~G   72 (301)
T 2xio_A            2 KFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITG-------GNLQDSKDALHLAQTNGM--FFSTVG   72 (301)
T ss_dssp             CEEEEEECTTCGGGGTEETTEECSCCCHHHHHHHHHHHTEEEEEECC-------CSHHHHHHHHHHHTTCTT--EEEEEC
T ss_pred             eEEEEcCCCCChHhcccccccccCccCHHHHHHHHHHCCCCEEEEeC-------CCHHHHHHHHHHHHHCCC--EEEEEE
Confidence            4899999998654321        13567778888999999999875       123344444444433222  222233


Q ss_pred             ccCCCc---------cchHHHHHHHHc---CCcEEEEe-cccCCCC-CCCCCCHHHHHHHHHHHHhcCCcEEEecCChhh
Q 013050          114 LVPENA---------YNASALEALLNA---GVLGLKSF-MCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG  179 (450)
Q Consensus       114 ~~~~~~---------~~~~~~~~~~~~---g~~~~~~~-~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~  179 (450)
                      +.+...         ...+.+.++++.   .+.++... ..+...+ .......+.+++.+++|+++|+||.+|+++.. 
T Consensus        73 iHP~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aIGEiGLd~~~~~~~~~~~Q~~~f~~ql~lA~~~~lPv~iH~r~a~-  151 (301)
T 2xio_A           73 CHPTRCGEFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSH-  151 (301)
T ss_dssp             CCGGGTHHHHHHCHHHHHHHHHHHHHTCTTTEEEEEEEEEETTCTTTSCHHHHHHHHHHTHHHHHHHCCCEEEEEESCH-
T ss_pred             ECcChhhhCcccccHHHHHHHHHHHhcCCCCeEEEEEeeCCCCcCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEecCch-
Confidence            333322         224556666553   33343221 2111000 00012236788899999999999999995422 


Q ss_pred             hhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEE
Q 013050          180 SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSIT  259 (450)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~  259 (450)
                                                       ..+++++++...    ...++ +.|+.+  .+.+.++++.+.|+.+.
T Consensus       152 ---------------------------------~~~~~il~~~~~----~~~~~-i~H~f~--g~~~~~~~~l~~g~yi~  191 (301)
T 2xio_A          152 ---------------------------------AEFLDITKRNRD----RCVGG-VVHSFD--GTKEAAAALIDLDLYIG  191 (301)
T ss_dssp             ---------------------------------HHHHHHHHHTGG----GSSCE-EETTCC--CCHHHHHHHHHTTCEEE
T ss_pred             ---------------------------------HHHHHHHHhccC----CCCcE-EEEccC--CCHHHHHHHHhcCcEEE
Confidence                                             344455544210    01233 478765  45566677667775444


Q ss_pred             EecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCC--eeEEcCCCCCCChhhh------ccc------CC
Q 013050          260 VETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELK------LLD------EG  325 (450)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~~~gtD~~~~~~~~~------~~~------~~  325 (450)
                      .  +.. .                   ++....    .+.++...  .+.++||. |.....+      .+.      ..
T Consensus       192 ~--~g~-~-------------------~~~~~~----~~~~~~~p~drlLleTD~-P~~~~~~~~~~~~~l~~~~p~~~~  244 (301)
T 2xio_A          192 F--NGC-S-------------------LKTEAN----LEVLKSIPSEKLMIETDA-PWCGVKSTHAGSKYIRTAFPTKKK  244 (301)
T ss_dssp             E--CGG-G-------------------SSSHHH----HHHHHTSCGGGEEECCCT-TSCCCCTTSTTGGGCCCCCCEESS
T ss_pred             E--ccc-c-------------------cCChHH----HHHHHhCChHHEEEecCC-CcccccccccccccccccCccccc
Confidence            4  221 0                   001111    13333322  35899995 4321000      000      00


Q ss_pred             Ccccc-CCCCcchhhHHHHHHHHHHh-cCCCHHHHHHHHhhchhHHhCCCCCCc
Q 013050          326 NFLKA-WGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQVSKGA  377 (450)
Q Consensus       326 ~~~~~-~~g~~~~~~~~~~~~~~~~~-~gls~~~al~~aT~~~A~~lg~~~~G~  377 (450)
                      .+-.. ..+.... ..+......+.+ .|+|.+++.+..+.|+.++++++..|.
T Consensus       245 ~~~g~~~~~~n~p-~~v~~~~~~ia~l~g~~~e~~~~~~~~Na~rlf~~~~~~~  297 (301)
T 2xio_A          245 WESGHCLKDRNEP-CHIIQILEIMSAVRDEDPLELANTLYNNTIKVFFPVIAEN  297 (301)
T ss_dssp             CCTTSEETTCCCG-GGHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCCC----
T ss_pred             ccccccCCCCCCh-HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhCchhhhh
Confidence            00000 0011111 223333333333 589999999999999999999843554

>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}

Probab=98.78  E-value=3.6e-07  Score=83.47  Aligned_cols=255  Identities=13%  Similarity=0.068  Sum_probs=137.3

Q ss_pred             cceeeccccCCCCCC--------cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhc----CCceEEE
Q 013050           42 GLIDVHAHLDDPGRT--------EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK----RIYVDVG  109 (450)
Q Consensus        42 G~iD~H~H~~~~~~~--------~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  109 (450)
                      -|||+|+|+..+.+.        ..+++......+.++||..++..+ ..   ..+........+....    .....++
T Consensus        27 ~~iDtH~HL~~~~f~g~y~gk~~h~~d~~~vl~rA~~aGV~~ii~~g-~~---~~~~~~~~~La~~~~~~~~~~v~~~~G  102 (325)
T 3ipw_A           27 QFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITS-GC---LNDFKKAIEIINKYQNLTNIKLVTTIG  102 (325)
T ss_dssp             CEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECC-CS---HHHHHHHHHHHHHHGGGCSSEEEEEEC
T ss_pred             CeEEEEECCCchHhccccccccccccCHHHHHHHHHHcCCcEEEEcc-CC---HHHHHHHHHHHHHCCCcccceEEEEEE
Confidence            599999999876541        135678888899999999998875 11   1222222222232221    1222333


Q ss_pred             EeccccCC-Ccc-chHHHHHHHHc---CCcEEEEe-cccCCCC-CCCCCCHHHHHHHHHHHHh-cCCcEEEecCChhhhh
Q 013050          110 FWGGLVPE-NAY-NASALEALLNA---GVLGLKSF-MCPSGIN-DFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKGSE  181 (450)
Q Consensus       110 ~~~~~~~~-~~~-~~~~~~~~~~~---g~~~~~~~-~~~~~~~-~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~~~  181 (450)
                      .++..... ..+ .++.+.++++.   .+.++... .++...+ .......+.+++.+++|++ +++||.+|.++..   
T Consensus       103 iHP~~~~~~~~~~~l~~L~~l~~~~~~~vvAIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~e~~~lPviiH~r~A~---  179 (325)
T 3ipw_A          103 VHPTRTNELKQEGYLDELLLLCEKNIDKVVAIGEIGLDYERLQFSDKETQLSGYRTLSILHQKYPYLPFFFHCRKSW---  179 (325)
T ss_dssp             CCGGGGGGGGSTTHHHHHHHHHHHTGGGEEEEEEEEEETTCCSSSCHHHHHHHHHHTHHHHHHCTTCCEEEEEESCH---
T ss_pred             ECcchhhcCCchHHHHHHHHHHhcCCCCEEEEEeeecCCCcCCCCCHHHHHHHHHHHHHHHHHhhCCeEEEEeCchH---
Confidence            33322221 122 46677777653   34444221 2221000 0011234678889999999 9999999996542   


Q ss_pred             hhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEe
Q 013050          182 RHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE  261 (450)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~  261 (450)
                                                     +.+++++++....    ..+. +.|+.+  .+.+.++++.+.|..++..
T Consensus       180 -------------------------------~d~l~iL~~~~~~----~~~g-ViH~Fs--Gs~e~a~~~l~lG~yis~~  221 (325)
T 3ipw_A          180 -------------------------------SDLCQLNKELGYN----GCKG-VVHCFD--GTEEEMNQILNEGWDIGVT  221 (325)
T ss_dssp             -------------------------------HHHHHHHHHTTCT----TSCE-EECSCC--CCHHHHHHHHHTTCEEEEC
T ss_pred             -------------------------------HHHHHHHHhcCCC----CCcE-EEEECC--CCHHHHHHHHhcCcEEeeC
Confidence                                           4566666654111    1223 458887  6777788877888665553


Q ss_pred             cCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcC--CeeEEcCCCCCCChhhhc------------------
Q 013050          262 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKL------------------  321 (450)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g--~~~~~gtD~~~~~~~~~~------------------  321 (450)
                      .+   . +                  +....   + +.++.-  -.+.+.||+ |+......                  
T Consensus       222 G~---~-~------------------k~~~~---~-~~v~~iPldrlLlETDa-P~l~~~~~~~~~~~~~~p~p~r~~~k  274 (325)
T 3ipw_A          222 GN---S-L------------------QSIEL---L-NVMKQIPIERLHIETDC-PYCGIKKTSAGFKYLKEKDFGVKVEK  274 (325)
T ss_dssp             SG---G-G------------------SSHHH---H-HHHTTSCGGGEEECCCT-TSCCCCTTSGGGGGCSSCCCCBCGGG
T ss_pred             cc---c-c------------------CcHHH---H-HHHHhCCcccEEEeCCC-ccccccccccchhcccccCccccccc
Confidence            21   1 0                  11111   1 222221  125799994 44211000                  


Q ss_pred             ccCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCC
Q 013050          322 LDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      ...+.+.   ++. .-...+....+.+ .-.|++++++.+..+.|.-+++++
T Consensus       275 ~~~~~~~---g~r-NeP~~v~~v~~~iA~l~g~~~eeva~~t~~Na~~lF~~  322 (325)
T 3ipw_A          275 YQRNKYV---QRR-NEPSNIIDIAIIMSSIKHISLFEFVNKVYSNSMNMYFP  322 (325)
T ss_dssp             CCTTSCB---TTC-CCGGGHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSC
T ss_pred             ccccccc---CCc-CcHHHHHHHHHHHHHhhCcCHHHHHHHHHHHHHHHhCc
Confidence            0000000   111 1122344444443 456899999999999999999987

>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0

Probab=98.78  E-value=1.7e-07  Score=82.79  Aligned_cols=236  Identities=18%  Similarity=0.130  Sum_probs=126.7

Q ss_pred             ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC----C
Q 013050           43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE----N  118 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  118 (450)
                      |||+|+|+...     ++.......+.+.||..+.. +  +.     ........+.+....  ++....++.+.    .
T Consensus         3 liDtH~HL~~~-----~d~~~vl~~a~~~gV~~i~v-~--~~-----~~~~~~~~~la~~~~--~v~~~~GiHP~~~~~~   67 (254)
T 3gg7_A            3 LIDFHVHLDLY-----PDPVAVARACEERQLTVLSV-T--TT-----PAAWRGTLALAAGRP--HVWTALGFHPEVVSER   67 (254)
T ss_dssp             CEEEEECGGGS-----SSHHHHHHHHHHTTCEEEEC-C--SS-----GGGHHHHHGGGTTCT--TEEECBCCCGGGTTTT
T ss_pred             eEEEeeCCCCC-----CCHHHHHHHHHHCCCcEEEe-c--CC-----HHHHHHHHHHHHhCC--CeEEEEeeCccccccc
Confidence            89999999753     24667788889999997653 3  11     222233333332221  22333333332    2


Q ss_pred             ccchHHHHHHHHcCCcEEEEe-cccCCCC-CCCCCCHHHHHHHHHHHHhcCCcEE-EecCChhhhhhhhhhccCcCCccc
Q 013050          119 AYNASALEALLNAGVLGLKSF-MCPSGIN-DFPMTNASHIKEGLSVLARYKRPLL-VHAEMEKGSERHVKLEDDTLDTRS  195 (450)
Q Consensus       119 ~~~~~~~~~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~-~H~~~~~~~~~~~~~~~~~~~~~~  195 (450)
                      ...++.+.+++.. +.++... ..+.... .......+.+++.+++|+++++||. +|+++..                 
T Consensus        68 ~~~l~~l~~~~~~-~vaIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~e~~lPviSiH~r~a~-----------------  129 (254)
T 3gg7_A           68 AADLPWFDRYLPE-TRFVGEVGLDGSPSLRGTWTQQFAVFQHILRRCEDHGGRILSIHSRRAE-----------------  129 (254)
T ss_dssp             GGGTHHHHHHGGG-CSEEEEEECCCCGGGGGGHHHHHHHHHHHHHHHHHTTCEEEEEECTTCH-----------------
T ss_pred             HHHHHHHHHHhhh-ccEEEEEecCCCcccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcH-----------------
Confidence            2445666666642 3333221 1111000 0011234568889999999999998 9996532                 


Q ss_pred             cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050          196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP  275 (450)
Q Consensus       196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~  275 (450)
                                       +.+++++++..     ...++ +.|+.+  .+.+.++++.+.|..++.  +....        
T Consensus       130 -----------------~~~~~il~~~~-----~~~~~-v~H~fs--G~~e~a~~~l~~G~yis~--~g~~~--------  174 (254)
T 3gg7_A          130 -----------------SEVLNCLEANP-----RSGTP-ILHWYS--GSVTELRRAISLGCWFSV--GPTMV--------  174 (254)
T ss_dssp             -----------------HHHHHHHHHCG-----GGEEE-EEETCC--SCHHHHHHHHHTTCEEEE--CHHHH--------
T ss_pred             -----------------HHHHHHHHHcC-----CCCcE-EEEeCC--CCHHHHHHHHcCCcEEEE--CcccC--------
Confidence                             35556666530     01123 458876  566777777777765544  32110        


Q ss_pred             CCCCceEEcCCCCChhhHHHHHHHHhcC--CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcC
Q 013050          276 DGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYG  352 (450)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g--~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g  352 (450)
                                  +...    +.+.++.-  -.+.+.||+ |..+..             |...-...+......+ .-.|
T Consensus       175 ------------~~~~----~~~~v~~ip~drlLlETD~-P~~~~r-------------g~~n~P~~v~~v~~~iA~~~g  224 (254)
T 3gg7_A          175 ------------RTQK----GAALIRSMPRDRVLTETDG-PFLELD-------------GQAALPWDVKSVVEGLSKIWQ  224 (254)
T ss_dssp             ------------TSHH----HHHHHHHSCGGGEEECCCT-TTSEET-------------TEECCGGGHHHHHHHHHHHHT
T ss_pred             ------------chHH----HHHHHHHcCCCeEEEeCCC-CccccC-------------CCCCCHHHHHHHHHHHHHHhC
Confidence                        0111    12222221  136799994 543211             1111122344444443 4568


Q ss_pred             CCHHHHHHHHhhchhHHhCCCCCC
Q 013050          353 VTLEQLASWWSERPAKLAGQVSKG  376 (450)
Q Consensus       353 ls~~~al~~aT~~~A~~lg~~~~G  376 (450)
                      +|.+++.+..+.|+.++++++.-|
T Consensus       225 ~~~ee~~~~~~~N~~~lf~~~~~~  248 (254)
T 3gg7_A          225 IPASEVERIVKENVSRLLGTVREG  248 (254)
T ss_dssp             SCHHHHHHHHHHHHHHHHHC----
T ss_pred             cCHHHHHHHHHHHHHHHHCCCccc
Confidence            999999999999999999984333

>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12

Probab=98.69  E-value=7.2e-07  Score=80.25  Aligned_cols=241  Identities=15%  Similarity=0.120  Sum_probs=127.0

Q ss_pred             ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC----
Q 013050           43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN----  118 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  118 (450)
                      ++|+|+|+....+.  .+.......+.++||+.++..+ .      .........+.......  +....++.+..    
T Consensus        13 ~~~~~~hl~~~~~~--~~~~~~l~~~~~~GV~~~v~~~-~------~~~~~~~~~~l~~~~p~--i~~~~G~hP~~~~~~   81 (268)
T 1j6o_A           13 MVDTHAHLHFHQFD--DDRNAVISSFEENNIEFVVNVG-V------NLEDSKKSLDLSKTSDR--IFCSVGVHPHDAKEV   81 (268)
T ss_dssp             EEEEEECTTSGGGT--TTHHHHHHTTTTTTEEEEEEEC-S------SHHHHHHHHHHHTTCTT--EEEEECCCGGGGGGC
T ss_pred             ccccccCCCChhhc--cCHHHHHHHHHHcCCCEEEEeC-C------CHHHHHHHHHHHHHCCC--EEEEEeecccccccc
Confidence            68999999875432  3466777888899999988774 1      12333333333333222  22222233322    


Q ss_pred             -ccchHHHHHHHHc------CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcC
Q 013050          119 -AYNASALEALLNA------GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL  191 (450)
Q Consensus       119 -~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~  191 (450)
                       ....+.+.++++.      |..|+..+....    ......+.+...++.|.++|++|.+|+...              
T Consensus        82 ~~~~~~~l~~~~~~~~~~~iGe~Gld~~~~~~----~~~~q~~~f~~~~~~a~~~~lPv~iH~~~~--------------  143 (268)
T 1j6o_A           82 PEDFIEHLEKFAKDEKVVAIGETGLDFFRNIS----PAEVQKRVFVEQIELAGKLNLPLVVHIRDA--------------  143 (268)
T ss_dssp             CTTHHHHHHHHTTSTTEEEEEEEEEETTTCSS----CHHHHHHHHHHHHHHHHHHTCCEEEEEESC--------------
T ss_pred             CHHHHHHHHHHhccCCEEEEEccccCCcccCC----ChHHHHHHHHHHHHHHHHhCCCEEEEeCch--------------
Confidence             1234555555542      223333322100    012345678899999999999999999532              


Q ss_pred             CccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccc
Q 013050          192 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA  271 (450)
Q Consensus       192 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~  271 (450)
                                          ...+++++++.    |....++.+ |+.+  ...+.++++.+.|  ++++++.... .  
T Consensus       144 --------------------~~~~~~il~~~----p~~~~~~I~-H~~~--g~~~~~~~~~~~g--~y~~~sg~~~-~--  191 (268)
T 1j6o_A          144 --------------------YSEAYEILRTE----SLPEKRGVI-HAFS--SDYEWAKKFIDLG--FLLGIGGPVT-Y--  191 (268)
T ss_dssp             --------------------HHHHHHHHHHS----CCCSSCEEE-TTCC--SCHHHHHHHHHHT--EEEEECGGGG-C--
T ss_pred             --------------------HHHHHHHHHhc----CCCCCCEEE-EcCC--CCHHHHHHHHHCC--CeEEeccccc-c--
Confidence                                13445555543    111455655 8765  3344555554444  4554433211 0  


Q ss_pred             cccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh-
Q 013050          272 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-  350 (450)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-  350 (450)
                                      ........+.+... --.++++||+ |........          |.......+......+.+ 
T Consensus       192 ----------------~~~~~l~~~i~~~~-~driL~eTD~-P~~~~~~~~----------g~~n~p~~~~~~~~~la~~  243 (268)
T 1j6o_A          192 ----------------PKNEALREVVKRVG-LEYIVLETDC-PFLPPQPFR----------GKRNEPKYLKYVVETISQV  243 (268)
T ss_dssp             ----------------TTCHHHHHHHHHHC-GGGEEECCCB-TSCCCGGGT----------TSCCCGGGHHHHHHHHHHH
T ss_pred             ----------------cchHHHHHHHHhCC-hhhEEEecCC-CCCCCcccC----------CCCCchHHHHHHHHHHHHH
Confidence                            00111111222221 1246799995 432211100          111111223444444433 


Q ss_pred             cCCCHHHHHHHHhhchhHHhCC
Q 013050          351 YGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       351 ~gls~~~al~~aT~~~A~~lg~  372 (450)
                      .++|.++.-+..+.|+.+++++
T Consensus       244 ~~~~~e~~~~i~~~Na~rlf~l  265 (268)
T 1j6o_A          244 LGVPEAKVDEATTENARRIFLE  265 (268)
T ss_dssp             HTSCHHHHHHHHHHHHHHHHHS
T ss_pred             hCcCHHHHHHHHHHHHHHHhCc
Confidence            6899999999999999999987

>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*

Probab=98.68  E-value=1.9e-06  Score=80.21  Aligned_cols=279  Identities=14%  Similarity=0.095  Sum_probs=146.0

Q ss_pred             cceeeccccCCCCC--------C---cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEE
Q 013050           42 GLIDVHAHLDDPGR--------T---EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF  110 (450)
Q Consensus        42 G~iD~H~H~~~~~~--------~---~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (450)
                      |++.+|=|+.....        .   ..+......+.+.+.|++++++..  ....-.....+....+.... ..+++..
T Consensus        21 G~tl~HEHl~~~~~~~~~~~~~~~l~d~~~~~~el~~~~~~G~~tiVd~t--~~~~GRd~~~l~~is~~t~~-~Gv~Iv~   97 (363)
T 3ovg_A           21 GITDCHDHFIKNGGPEVEEHIDFLMLNVDASIKEFKEFIDRGGSTIVTMD--PPNVGRDVLKTLEIANAVKN-LGGNVIM   97 (363)
T ss_dssp             CEEEEEECSCBCSSHHHHHCGGGCBCCHHHHHHHHHHHHHTTEEEEEECC--CTTTTCCHHHHHHHHHHHGG-GTCEEEE
T ss_pred             CCceeccceeccCChhhccCCcccccCHHHHHHHHHHHHHhCCCeEEEeC--CCccCCCHHHHHHHHHhccc-CCcEEEE
Confidence            88999999853211        0   111223345567789999999984  22333455555555544321 1234433


Q ss_pred             eccccCCC-----cc-----chHHHHHH----HHcCCcE------------E-----EEecccCCCCCCCCCCHHHHHHH
Q 013050          111 WGGLVPEN-----AY-----NASALEAL----LNAGVLG------------L-----KSFMCPSGINDFPMTNASHIKEG  159 (450)
Q Consensus       111 ~~~~~~~~-----~~-----~~~~~~~~----~~~g~~~------------~-----~~~~~~~~~~~~~~~~~~~l~~~  159 (450)
                      ..++....     +.     ..+++.++    +..|+.+            +     +.-..+.   .......+.+++.
T Consensus        98 ~TG~y~~~~~~~~~~~~~~~~~e~l~~~~~~ei~~Gi~~~~~~gp~~~~t~ikaG~ikig~s~~---~~t~~Q~~~f~aq  174 (363)
T 3ovg_A           98 STGFHKAKFYDKYSSWLAVVPTEEIVKMCVAEIEEGMDEYNYNGPVVKRSKAKAGIIKAGTGYG---AIDRLELKALEVA  174 (363)
T ss_dssp             EEECCCGGGSCTTTSHHHHSCHHHHHHHHHHHHHTCCBTTTTSSSCCCBCSCCCCEEEEEEEET---BEEHHHHHHHHHH
T ss_pred             eCCCCcCcccccCcHhhhcCCHHHHHHHHHHHHHhcccccccccccccCCCccCCEEEEEeCCC---CCCHHHHHHHHHH
Confidence            22221110     11     12233222    2344321            2     2222221   1112344668888


Q ss_pred             HHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecC
Q 013050          160 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS  239 (450)
Q Consensus       160 ~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~  239 (450)
                      +++|++.|+||.+|.+....                               +. ..++++++...    +..++.+.|+.
T Consensus       175 ~~~A~e~glPViiH~r~gr~-------------------------------a~-d~l~iL~e~g~----~~~~vvi~H~~  218 (363)
T 3ovg_A          175 ARTSILTGCPILVHTQLGTM-------------------------------AL-EVAKHLIGFGA----NPDKIQISHLN  218 (363)
T ss_dssp             HHHHHHHCCCEEEEEETTCS-------------------------------HH-HHHHHHHHHTC----CGGGEEEECGG
T ss_pred             HHHHHHhCCEEEEeCCCCCC-------------------------------HH-HHHHHHHhcCC----CCCcEEEEcCC
Confidence            99999999999999953110                               12 34455554300    12346667887


Q ss_pred             ChhHHHHHHHHHH-hCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCe--eEEcCCCCCCC
Q 013050          240 DASSSLDLLMEAK-TNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI--DMLSSDHSPTV  316 (450)
Q Consensus       240 ~~~~~~~~~~~~~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~--~~~gtD~~~~~  316 (450)
                      .. .+.+..+++. +.|..+.......+               ...+   .......+.+.++.+..  +.++||.. ..
T Consensus       219 ~~-~~~~~a~~~l~~~G~yI~f~g~~~~---------------~~~~---~~~ra~~l~~lv~~~p~drILleTDap-~~  278 (363)
T 3ovg_A          219 KN-PDKYYYEKVIKETGVTLCFDGPDRV---------------KYYP---DSLLAENIKYLVDKGLQKHITLSLDAG-RI  278 (363)
T ss_dssp             GS-CCHHHHHHHHHHHCCEEEECCTTCT---------------TTCC---HHHHHHHHHHHHHTTCGGGEEECCCCC-SG
T ss_pred             CC-CCHHHHHHHHHHCCcEEEECCeecc---------------ccCC---hhHHHHHHHHHHHhcCCCeEEEeCCCC-CC
Confidence            43 4455556655 66765554321100               0000   11233456666666653  68999954 22


Q ss_pred             hhhhcccCCCccccC-CCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCCccccCCCccEE
Q 013050          317 PELKLLDEGNFLKAW-GGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLV  387 (450)
Q Consensus       317 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlv  387 (450)
                      ......+     ... .........+......+...|+|.+++.++.|.||+++|+++..+++.+||.-+-|
T Consensus       279 ~~l~~~G-----~~~g~~~n~p~~l~~~~~~~a~~rGis~eei~~it~~Np~rlf~l~~~~~~~~~~~~~~~  345 (363)
T 3ovg_A          279 LYQRNYG-----LTKGKQTFGLAYLFDRFLPLLKQVGVSKEAIFDILVNNPKRVLAFDEKRNFDPLKVSKEV  345 (363)
T ss_dssp             GGSHHHH-----HHTTEECCCTHHHHHTHHHHHHHHTCCHHHHHHHHTHHHHHHTSCCCCCCCCGGGSCHHH
T ss_pred             cCCCCCC-----ccCCCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCcCccCcccCCHHH
Confidence            1111000     000 00112233233333445677999999999999999999999667999999976543

>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii}

Probab=98.67  E-value=3.6e-06  Score=76.78  Aligned_cols=250  Identities=12%  Similarity=0.054  Sum_probs=137.5

Q ss_pred             EeccceeeccccCCCCCCc----------ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEE
Q 013050           39 IMPGLIDVHAHLDDPGRTE----------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV  108 (450)
Q Consensus        39 v~PG~iD~H~H~~~~~~~~----------~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (450)
                      +=|++||+|+|+....+.+          ..+.......+.+.||..++... ........ ..+....+.....    +
T Consensus        23 ~p~~~iDtH~Hl~~~~~p~~~~~~~~p~~~~~~e~~l~~~~~~GV~~~V~v~-~~~~~~~n-~~~~~~~~~~p~r----~   96 (294)
T 4i6k_A           23 MKMNCIDTHAHVFSTQDHSIETARYAPDYEATVQSFISHLDEHNFTHGVLVQ-PSFLGTNN-QAMLNAIQQYPDR----L   96 (294)
T ss_dssp             --CCSEEEEECCBCTTSCCCTTCSCCCCSCBCHHHHHHHHHHTTCCEEEEEC-CGGGTTCC-HHHHHHHHHSTTT----E
T ss_pred             CCCCceEeeeEeecCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEec-Ccccccch-HHHHHHHHHCCCe----E
Confidence            4457899999997654321          13466777888999999988764 11111111 1122222222111    1


Q ss_pred             EEeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhcc
Q 013050          109 GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLED  188 (450)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~  188 (450)
                      .....+.+..  ..++++++.+.|+.+++......   ..+....+.+...++.++++|++|.+|.+...          
T Consensus        97 ~g~~~v~P~~--~~~eL~~l~~~gv~Gi~l~~~~~---~~~~~~~~~~~~~~~~a~~~glpv~iH~~~~~----------  161 (294)
T 4i6k_A           97 KGIAVVQHTT--TFNELVNLKAQGIVGVRLNLFGL---NLPALNTPDWQKFLRNVESLNWQVELHAPPKY----------  161 (294)
T ss_dssp             EEEECCCTTC--CHHHHHHHHTTTEEEEEEECTTS---CCCCSSSHHHHHHHHHHHHTTCEEEEECCHHH----------
T ss_pred             EEEEEeCCcc--cHHHHHHHHHCCCcEEEeccCCC---CCCCcccHHHHHHHHHHHHcCCEEEEeeCcch----------
Confidence            2212232222  34677788888999998654221   11234568899999999999999999995322          


Q ss_pred             CcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChh-------HHHHHHHHHHhCCCcEEEe
Q 013050          189 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS-------SSLDLLMEAKTNGDSITVE  261 (450)
Q Consensus       189 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~-------~~~~~~~~~~~~g~~v~~~  261 (450)
                                             +..+.+++++      ++ .++.+.|++...       ...+.+..+.+. -.+++.
T Consensus       162 -----------------------l~~~~~~l~~------~p-~~~Vi~H~g~p~~~~g~~~~~~~~~~~l~~~-~nv~~k  210 (294)
T 4i6k_A          162 -----------------------LVQLLPQLNE------YS-FDVVIDHFGRVDPVKGIEDPDYQKFLSLLNV-KQHWIK  210 (294)
T ss_dssp             -----------------------HHHHHHHHTT------SS-SCEEESGGGCCCTTTCTTCHHHHHHHHHCCT-TTEEEE
T ss_pred             -----------------------HHHHHHHHHH------CC-CCEEEECCCCCCCCCCCCCHHHHHHHHHHhC-CCEEEE
Confidence                                   3455666664      23 678888887520       234444444322 246665


Q ss_pred             cCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHh-cCC-eeEEcCCCCCCChhhhcccCCCccccCCCCcchhh
Q 013050          262 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALM-DGH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF  339 (450)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~  339 (450)
                      ++..+....              ...........+.+.++ -|. .+++|||+ |.....             +    ..
T Consensus       211 ~Sg~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~dRll~gSD~-P~~~~~-------------~----~~  258 (294)
T 4i6k_A          211 VSGFYRLGA--------------TPSNINIAQQAYNIFKEKGFLHKLIWGSDW-PHTQHE-------------S----LI  258 (294)
T ss_dssp             CCCGGGSSS--------------TTHHHHHHHHHHHHHHHHTCGGGEECCCCB-TCTTCT-------------T----TC
T ss_pred             ecccccccc--------------cCCCchhhHHHHHHHHHHhCcccEEEeCCC-CCCCCc-------------C----CC
Confidence            543221100              00000111223333333 232 46799994 442211             0    00


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          340 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       340 ~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      .+...++.+.+.++|.++.-+..+.|+++++++
T Consensus       259 ~y~~~~~~l~~~~~~~~~~~~i~~~NA~rl~~l  291 (294)
T 4i6k_A          259 TYEDAIKAFKQIVFDKHEQCLILNQNPTELFGF  291 (294)
T ss_dssp             CHHHHHHHHHHHCCCHHHHHHHHTHHHHHHHTC
T ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHCHHHHhCC
Confidence            122233445555799999999999999999998

>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp}

Probab=98.66  E-value=2.5e-06  Score=76.60  Aligned_cols=243  Identities=14%  Similarity=0.145  Sum_probs=123.0

Q ss_pred             ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCc---
Q 013050           43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA---  119 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  119 (450)
                      +||+|+|+....+.  .+.....+.+.+.||+.++..+ ..      ........+.......  +....++.+...   
T Consensus         2 ~iD~H~Hl~~~~~~--~~~~~~l~~~~~~Gv~~~v~~~-~~------~~~~~~~~~~~~~~p~--~~~~~g~~P~~~~~~   70 (265)
T 2gzx_A            2 LIDTHVHLNDEQYD--DDLSEVITRAREAGVDRMFVVG-FN------KSTIERAMKLIDEYDF--LYGIIGWHPVDAIDF   70 (265)
T ss_dssp             CEEEEECTTSGGGT--TTHHHHHHHHHHTTCCEEEEEE-CS------HHHHHHHHHHHHHCTT--EEEEECCCGGGGGGC
T ss_pred             eEEEeeCCCCcccc--cCHHHHHHHHHHcCCCEEEEeC-CC------HHHHHHHHHHHHhCCC--EEEEEEeccCccccC
Confidence            79999999765321  2366677788899999988775 11      2222333333332222  222222333221   


Q ss_pred             --cchHHHHHHHHc-CCcEEEEe-cccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050          120 --YNASALEALLNA-GVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS  195 (450)
Q Consensus       120 --~~~~~~~~~~~~-g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~  195 (450)
                        ...+.+.++++. ++.++... ..+...........+.+...++.|+++|++|.+|.....                 
T Consensus        71 ~~~~~~~l~~~~~~~~~~~iGe~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~~~pv~iH~~~~~-----------------  133 (265)
T 2gzx_A           71 TEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKRLKLPIIIHNREAT-----------------  133 (265)
T ss_dssp             CHHHHHHHHHHTTSTTEEEEEEEEEECSCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH-----------------
T ss_pred             CHHHHHHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEecccH-----------------
Confidence              124555555442 23333221 111000000123456788999999999999999994321                 


Q ss_pred             cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHh-CCCcEEEecCcchhccccccc
Q 013050          196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKT-NGDSITVETCPHYLAFSAEEI  274 (450)
Q Consensus       196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~~  274 (450)
                                       ..+++++++..    ....++. .|....  ..+.+.++.+ .|  ++++++..... .    
T Consensus       134 -----------------~~~~~~l~~~p----~~~~~~i-~H~~~g--~~~~~~~~l~~~~--~y~~~sg~~~~-~----  182 (265)
T 2gzx_A          134 -----------------QDCIDILLEEH----AEEVGGI-MHSFSG--SPEIADIVTNKLN--FYISLGGPVTF-K----  182 (265)
T ss_dssp             -----------------HHHHHHHHHTT----GGGTCEE-ETTCCS--CHHHHHHHHHTSC--CEEEECGGGGC-S----
T ss_pred             -----------------HHHHHHHHhcC----CCCCcEE-EEcCCC--CHHHHHHHHHHCC--ceEEecceeec-C----
Confidence                             34455555530    0034554 465542  2344444444 45  44443432110 0    


Q ss_pred             CCCCCceEEcCCCCChhhHHHHHHHHhc-C-CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh-c
Q 013050          275 PDGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-Y  351 (450)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~  351 (450)
                                    ...   .+.+.++. + -.++++||+ |.......          .|.......+......+.+ .
T Consensus       183 --------------~~~---~~~~~i~~~~~dril~gSD~-P~~~~~~~----------~g~~~~~~~~~~~~~~l~~~~  234 (265)
T 2gzx_A          183 --------------NAK---QPKEVAKHVSMERLLVETDA-PYLSPHPY----------RGKRNEPARVTLVAEQIAELK  234 (265)
T ss_dssp             --------------SCC---HHHHHHHHSCTTTEEECCCT-TSCCCTTC----------TTSCCCGGGHHHHHHHHHHHT
T ss_pred             --------------CcH---HHHHHHHhCChhhEEEccCC-CCCCCccc----------CCCCCChHHHHHHHHHHHHHh
Confidence                          001   12222332 2 357899995 43211110          0111112234444444444 6


Q ss_pred             CCCHHHHHHHHhhchhHHhCC
Q 013050          352 GVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       352 gls~~~al~~aT~~~A~~lg~  372 (450)
                      ++|.++.-++.+.|+++++++
T Consensus       235 ~~~~~~~~~i~~~Na~rl~~~  255 (265)
T 2gzx_A          235 GLSYEEVCEQTTKNAEKLFNL  255 (265)
T ss_dssp             TCCHHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHHhCC
Confidence            899999999999999999998

>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis}

Probab=98.61  E-value=3.4e-06  Score=78.71  Aligned_cols=245  Identities=16%  Similarity=0.147  Sum_probs=126.4

Q ss_pred             HHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccc--cCCCccchHHHHHHH----HcCCc----
Q 013050           65 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL--VPENAYNASALEALL----NAGVL----  134 (450)
Q Consensus        65 ~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~g~~----  134 (450)
                      .+.+.++|+|++++.. ++.........+....+..........+++...  ........+.+.+++    ..|+.    
T Consensus        81 l~~~~~aGv~tiV~~~-g~~g~~r~~~~l~~la~~~gi~i~~~tG~y~~~~~P~~~~~~~~~L~~~~~~ei~~gi~~t~v  159 (365)
T 3rhg_A           81 LNNFKELGGKTIVDAT-GSSSIGRDIRKLKQVAELTGINVVASSGLYIEKFEGKRLADDIDAMAKMIDDELNIGIDGTDI  159 (365)
T ss_dssp             HHHHHHTTEEEEEECC-CSGGGTCCHHHHHHHHHHHCCEEECEECCCCHHHHGGGGGSCHHHHHHHHHHHHHTCSTTSSC
T ss_pred             HHHHHhcCCCeEEEcC-CCCCCCCCHHHHHHHHHHHCCcEEEEeCccCCCCCchhhcCCHHHHHHHHHHHHHhccccCCc
Confidence            4577899999999985 343333556665555543221112222222000  111101234443332    22221    


Q ss_pred             ---EEE-EecccCCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEec-CChhhhhhhhhhccCcCCccccccccCCCChHHH
Q 013050          135 ---GLK-SFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHA-EMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWE  208 (450)
Q Consensus       135 ---~~~-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  208 (450)
                         .+. ....+    .......+.+++.+++|++. |+||.+|. +....                             
T Consensus       160 kag~IGEiGld~----~~t~~q~~~f~aq~~~A~~~~glPV~iH~~r~~~a-----------------------------  206 (365)
T 3rhg_A          160 RAGMIGEIGVSP----FFTDGEKNSLRAAALAQNNNPYASMNIHMPGWQRR-----------------------------  206 (365)
T ss_dssp             CCCEEEEEECCT----TCCHHHHHHHHHHHHHHTTCTTCEEEEECCTTSCC-----------------------------
T ss_pred             eeEEEEEEEcCC----CCCHHHHHHHHHHHHHHHHhcCCcEEEECCCCCcC-----------------------------
Confidence               121 11111    01112345678888899999 99999997 52111                             


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCceEEEEecC-ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCC
Q 013050          209 EAAIRELLTVAKDTRTDGPAEGAHLHIVHLS-DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI  287 (450)
Q Consensus       209 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~-~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (450)
                         -.+.++++++.. +  .+..++.+.|+. +. .+.+..+++.+.|..+..........     ++..+  .  .+  
T Consensus       207 ---~~e~l~iL~e~~-~--~~~~~vvi~H~~rs~-~~~e~a~~~l~~G~~I~~~g~g~~~t-----f~~~~--~--~~--  268 (365)
T 3rhg_A          207 ---GDEVLDILLTEM-G--CDPAKISLAHSDPSG-KDIDYQCKMLDRGVWLEFDMIGLDIS-----FPKEG--A--AP--  268 (365)
T ss_dssp             ---HHHHHHHHTTTT-C--CCGGGEEESCCGGGT-TCHHHHHHHHHTTCEEEECCTTCCCB-----CSSSC--B--CC--
T ss_pred             ---HHHHHHHHHhcc-C--CCCCceEEecCCCCC-CCHHHHHHHHhCCCEEEecCCCcccc-----ccccc--c--cc--
Confidence               133444544310 0  012346667888 43 56778888888887655532100000     00000  0  00  


Q ss_pred             CChhhHHHHHHHHhcCC--eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 013050          288 RDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSER  365 (450)
Q Consensus       288 ~~~~~~~~l~~~~~~g~--~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~  365 (450)
                      ........+.+.++.+.  .+.+.||.. .....+..         ++ .+....+......+...|+|.+++.++.|.|
T Consensus       269 ~d~~~a~~l~~li~~g~~drilleTD~p-~l~~~~~~---------G~-~~~~~l~~~~~~~~~~~Gis~e~i~~~~~~N  337 (365)
T 3rhg_A          269 SVMDTVEAVATLIERGYGNQIVLSHDVF-LKQMWAKN---------GG-NGWGFVPNVFLSLLAQRGIDKTIIDKLCIDN  337 (365)
T ss_dssp             CHHHHHHHHHHHHHTTCGGGEEECCCCC-SGGGSGGG---------TS-CTTTHHHHTHHHHHHHTTCCHHHHHHHTTHH
T ss_pred             chHHHHHHHHHHHHhCCCCcEEEeCCCC-CCCCCCcC---------CC-CCchhHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            01123445667777775  368999953 32222211         12 2333434444445677899999999999999


Q ss_pred             hhHHhCC
Q 013050          366 PAKLAGQ  372 (450)
Q Consensus       366 ~A~~lg~  372 (450)
                      |+++|++
T Consensus       338 p~rlf~l  344 (365)
T 3rhg_A          338 PANLLAA  344 (365)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHCC
Confidence            9999998

>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2}

Probab=98.49  E-value=2.1e-05  Score=73.36  Aligned_cols=240  Identities=17%  Similarity=0.195  Sum_probs=126.4

Q ss_pred             HHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEecccc-----CC--CccchHHHHHHHH----c
Q 013050           63 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-----PE--NAYNASALEALLN----A  131 (450)
Q Consensus        63 ~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~----~  131 (450)
                      ...+.+.++|++++++..  +.........+....+..    .+++....++.     +.  .....+.+.++..    .
T Consensus        90 ~~l~~~~~aGv~tiV~~t--~~g~gr~~~~l~~la~~~----gv~i~~~tG~y~~~~~P~~~~~~~~~~L~~~~~~ei~~  163 (364)
T 3k2g_A           90 AEVKQFAAVGGRSIVDPT--CRGIGRDPVKLRRISAET----GVQVVMGAGYYLASSMPETAARLSADDIADEIVAEALE  163 (364)
T ss_dssp             HHHHHHHHTTCCEEEECC--CBTTTCCHHHHHHHHHHH----CCEEEECCSBCCGGGCCGGGGTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCeEEEeC--CCcccCCHHHHHHHHHHh----CCcEEEEeCccCCCCCchhhccCCHHHHHHHHHHHHHh
Confidence            345678899999999984  222234555555554432    23333333332     11  1112344443321    2


Q ss_pred             C---------CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC-C-hhhhhhhhhhccCcCCcccccccc
Q 013050          132 G---------VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE-M-EKGSERHVKLEDDTLDTRSYSTYL  200 (450)
Q Consensus       132 g---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  200 (450)
                      |         +.+ .....+    .......+.++..+++|++.|+||.+|.+ . ..                      
T Consensus       164 Gi~~~~vkag~IG-EiGld~----~~t~~q~~~f~aq~~~A~~~glPV~iH~~gr~~a----------------------  216 (364)
T 3k2g_A          164 GTDGTDARIGLIG-EIGVSS----DFTAEEEKSLRGAARAQVRTGLPLMVHLPGWFRL----------------------  216 (364)
T ss_dssp             CBTTBSCCCSSEE-EEECCT----TCCHHHHHHHHHHHHHHHHHCCCEEEECCTTSCC----------------------
T ss_pred             ccccCCcceeEEE-EEEcCC----CCCHHHHHHHHHHHHHHHHHCCeEEEecCCCCcc----------------------
Confidence            2         221 111111    01112345678888999999999999982 1 11                      


Q ss_pred             CCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhH-HHHHHHHHHhCCCcEEEecCcchhcccccccCCCCC
Q 013050          201 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS-SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT  279 (450)
Q Consensus       201 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~  279 (450)
                                 -.+.++++++.  +.  +..++.+.|+... . +.+..+++.+.|..+..........     ++..+ 
T Consensus       217 -----------~~e~l~iL~e~--g~--~~~~vvi~H~~~s-~~~~e~a~~~l~~G~~I~f~g~gt~~~-----f~~~~-  274 (364)
T 3k2g_A          217 -----------AHRVLDLVEEE--GA--DLRHTVLCHMNPS-HMDPVYQATLAQRGAFLEFDMIGMDFF-----YADQG-  274 (364)
T ss_dssp             -----------HHHHHHHHHHT--TC--CGGGEEECCCGGG-TTCHHHHHHHHHHTCEEEECCTTCCCE-----ETTTT-
T ss_pred             -----------HHHHHHHHHHc--CC--CCCceEEECCCCC-CCCHHHHHHHHhCCcEEEecCCccccc-----ccccc-
Confidence                       13344455543  00  1234666799843 4 7788888888887655532110000     00000 


Q ss_pred             ceEEcCCCCChhhHHHHHHHHhcCC--eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHH
Q 013050          280 RFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ  357 (450)
Q Consensus       280 ~~~~~~~~~~~~~~~~l~~~~~~g~--~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~  357 (450)
                       + ..|  ........+.+.++.+.  .+.+.||.. .......         .+| .+....+......+...|+|.++
T Consensus       275 -~-~~~--~d~~ra~~l~~lv~~gp~drilleTD~p-~~~~~~~---------~gg-~~~~~l~~~~~~~l~~~Gis~ee  339 (364)
T 3k2g_A          275 -V-QCP--SDDEVARAILGLADHGYLDRILLSHDVF-VKMMLTR---------YGG-NGYAFVTKHFLPRLRRHGLDDAA  339 (364)
T ss_dssp             -E-ECC--CHHHHHHHHHHHHHTTCGGGEEECCCCC-SGGGSGG---------GTS-CTTSHHHHHHHHHHHHTTCCHHH
T ss_pred             -c-ccc--cHHHHHHHHHHHHHhCCcccEEEeCCCC-CCCCCCC---------CCC-CCcchHHHHHHHHHHHcCCCHHH
Confidence             0 011  01123455667777775  368999953 3211111         112 23333344444455678999999


Q ss_pred             HHHHHhhchhHHhCC
Q 013050          358 LASWWSERPAKLAGQ  372 (450)
Q Consensus       358 al~~aT~~~A~~lg~  372 (450)
                      +.++.|.||+++|++
T Consensus       340 i~~~~~~Np~rlf~l  354 (364)
T 3k2g_A          340 LETLMVTNPRRVFDA  354 (364)
T ss_dssp             HHHHHTHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCC
Confidence            999999999999998

>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0

Probab=98.49  E-value=1.2e-05  Score=73.85  Aligned_cols=159  Identities=15%  Similarity=0.157  Sum_probs=88.7

Q ss_pred             CHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCc
Q 013050          152 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA  231 (450)
Q Consensus       152 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~  231 (450)
                      ..+.+++.+++|++.|+||.+|.+....                               ..+ .++++++..  .  +..
T Consensus       166 q~~~f~aq~~~A~~~glPViiH~r~g~~-------------------------------a~~-~l~iL~e~~--~--~~~  209 (330)
T 3pnz_A          166 EEKTIRAVARAHHETKAPIHSHTEAGTM-------------------------------ALE-QIEILKQEN--I--PLE  209 (330)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEECGGGCC-------------------------------HHH-HHHHHHHTT--C--CGG
T ss_pred             HHHHHHHHHHHHHHHCCeEEEeCCCCcC-------------------------------hHH-HHHHHHHcC--C--CCC
Confidence            4566888999999999999999953110                               112 244555430  0  123


Q ss_pred             eEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCC--eeEEc
Q 013050          232 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLS  309 (450)
Q Consensus       232 ~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~~~g  309 (450)
                      ++.+.|+... .+.+..+++.+.|..+........               ...   ........+.+.++.+.  .+.++
T Consensus       210 ~vvi~H~~~s-~~~e~a~~~l~~G~~i~~~g~~t~---------------~~~---~~~~~~~~l~~lv~~g~~drille  270 (330)
T 3pnz_A          210 YLSIGHMDRN-LDPYYHKQVAKTGAFMSFDGIAKI---------------KYA---PESARIAAILYLVSEGFEDQILVS  270 (330)
T ss_dssp             GEEETTGGGS-CCHHHHHHHHTTTCEEEECCTTCT---------------TTC---CHHHHHHHHHHHHHTTCGGGEEEC
T ss_pred             eEEEecCCCC-CCHHHHHHHHHcCcEEEEccCccc---------------CCC---ChHHHHHHHHHHHHcCCCCeEEEe
Confidence            4656788622 557778888788865554321100               000   01123344566666664  36899


Q ss_pred             CCCCCCChhhhcccCCCccccCCCCcch-hhHHHHHHHHHHhcCCCHHH-HHHHHhhchhHHhCC
Q 013050          310 SDHSPTVPELKLLDEGNFLKAWGGISSL-QFVLPVTWSYGRKYGVTLEQ-LASWWSERPAKLAGQ  372 (450)
Q Consensus       310 tD~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~gls~~~-al~~aT~~~A~~lg~  372 (450)
                      ||.. .....+..+.      ..+.... ...++.+...+...|+|.++ +.++.|.||+++|++
T Consensus       271 TD~p-~~~~~~~~G~------~~~~~~~~~~~~~~l~~~a~~~Gis~ee~i~~~t~~Np~rlf~l  328 (330)
T 3pnz_A          271 GDTA-RKTYYKHYGH------GPGLEYIAKKWVPRFIDEANEKGFDGEKLVKKFFVDNPARCFTF  328 (330)
T ss_dssp             CCCC-SGGGSHHHHC------CSTTTHHHHTHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHSSC
T ss_pred             CCCC-CCCCCCccCC------CCCcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHhcC
Confidence            9953 2111110000      0111111 11223333334678999998 999999999999987

>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824}

Probab=98.47  E-value=1.8e-05  Score=71.19  Aligned_cols=230  Identities=13%  Similarity=0.112  Sum_probs=125.3

Q ss_pred             ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCC-CC----------------------cHH----HHHH
Q 013050           43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPS-TI----------------------STE----TLKL   95 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~-~~----------------------~~~----~~~~   95 (450)
                      +||+|+|+..+       .....+.+.+.||..++..+....+. ..                      ...    ....
T Consensus         4 ~iD~H~Hl~~~-------~~~~l~~m~~~Gv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~n~~   76 (272)
T 3cjp_A            4 IIDGHTHVILP-------VEKHIKIMDEAGVDKTILFSTSIHPETAVNLRDVKKEMKKLNDVVNGKTNSMIDVRRNSIKE   76 (272)
T ss_dssp             CEEEEEECCSS-------HHHHHHHHHHHTCCEEEEECCSCCGGGCCSHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHH
T ss_pred             EEEehhhcCCC-------HHHHHHHHHHcCCCEEEEeCCCCCccccchhhhhhhhhhcccccccCCchhhHHHHHhhHHH
Confidence            79999998653       35566777889999987764111110 00                      000    1111


Q ss_pred             HHHHHhcCCceEEEEeccccCCC--ccchHHHHHHH-HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhc-CCcEE
Q 013050           96 KVDAAEKRIYVDVGFWGGLVPEN--AYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLL  171 (450)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~  171 (450)
                      ..+....... .+...+.+....  ....+++++++ +.|+.+++.+...      .. ..+.+...++.|+++ |++|.
T Consensus        77 ~~~~~~~~p~-~~~~~g~~p~~~~~~~~~~el~~~~~~~g~~gi~~~g~~------~~-~~~~~~~~~~~a~~~~~lpv~  148 (272)
T 3cjp_A           77 LTNVIQAYPS-RYVGFGNVPVGLSENDTNSYIEENIVNNKLVGIGELTPA------SG-QIKSLKPIFKYSMDSGSLPIW  148 (272)
T ss_dssp             HHHHHHHSTT-TEEEEECCCTTCCHHHHHHHHHHHTTTTTCSEEEEECCC------TT-CGGGGHHHHHHHHHTTCCCEE
T ss_pred             HHHHHHhCCC-eEEEEEEeCCCCCcHHHHHHHHHHHHhcCceEEEecCCC------CC-ccHHHHHHHHHHHhccCCcEE
Confidence            2222222111 222222222222  23345666655 4688898764311      12 567889999999999 99999


Q ss_pred             EecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHH
Q 013050          172 VHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEA  251 (450)
Q Consensus       172 ~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~  251 (450)
                      +|...+..                             ......+..++++      +++.++.+.|.... ...+.++.+
T Consensus       149 iH~~~~~~-----------------------------~~~~~~~~~~l~~------~p~l~iv~~H~G~~-~~~~~~~~~  192 (272)
T 3cjp_A          149 IHAFNPLV-----------------------------LQDIKEIAELCKA------FPKVPVILGHMGGS-NWMTAVELA  192 (272)
T ss_dssp             ECCSTTCC-----------------------------HHHHHHHHHHHHH------STTSCEEEGGGGGG-GHHHHHHHH
T ss_pred             EeCCCCCc-----------------------------cccHHHHHHHHHH------CCCceEEEECCCCc-cHHHHHHHH
Confidence            99954210                             1123455566665      34667766777654 333344434


Q ss_pred             HhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccC
Q 013050          252 KTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW  331 (450)
Q Consensus       252 ~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~  331 (450)
                      ++. ..++++++...                      .......+.+..  +-.+++|||+ |.....            
T Consensus       193 ~~~-~~~y~~~s~~~----------------------~~~~~~~~~~~~--~dril~gSD~-P~~~~~------------  234 (272)
T 3cjp_A          193 KEI-QNLYLDTSAYF----------------------STFVLKIVINEL--PLKCIFGTDM-PFGDLQ------------  234 (272)
T ss_dssp             HHC-TTEEEECTTCS----------------------CHHHHHHHHHHS--TTTEECCCCT-TSSCHH------------
T ss_pred             HhC-CCEEEEecccc----------------------cHHHHHHHHHhC--CCeEEEeCCC-CCCChH------------
Confidence            332 23555443211                      011122223333  3567899995 442111            


Q ss_pred             CCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          332 GGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       332 ~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                                 .....+...++|.++.-+....|+++++++
T Consensus       235 -----------~~~~~~~~~~l~~~~~~~i~~~Na~rl~~l  264 (272)
T 3cjp_A          235 -----------LSIEAIKKMSNDSYVANAVLGDNISRLLNI  264 (272)
T ss_dssp             -----------HHHHHHHHHCSSHHHHHHHHTHHHHHHHTC
T ss_pred             -----------HHHHHHHhcCCCHHHHHHHHHHHHHHHhCc
Confidence                       111233446899999999999999999998

>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A*

Probab=98.35  E-value=1.6e-05  Score=73.47  Aligned_cols=267  Identities=18%  Similarity=0.120  Sum_probs=134.9

Q ss_pred             cceeeccccCC--CCC------Cccc---c---hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceE
Q 013050           42 GLIDVHAHLDD--PGR------TEWE---G---FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD  107 (450)
Q Consensus        42 G~iD~H~H~~~--~~~------~~~~---~---~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (450)
                      |++.+|=|+..  ++.      ..|+   .   .......+.++|++++++..  +.........+....+..    .++
T Consensus        32 G~t~~HEHl~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~a~~aGv~tiV~~~--~~~~~r~~~~l~~la~~~----g~~  105 (339)
T 3gtx_A           32 GATLPHEHVIFGYPGYAGDVTLGPFDHAAALASCTETARALLARGIQTVVDAT--PNGCGRNPAFLREVSEAT----GLQ  105 (339)
T ss_dssp             CEEEEEEEEEECCTTGGGGTTTSCCCHHHHHHHHHHHHHHHHHTTEEEEEECC--CTTTTCCHHHHHHHHHHH----CCE
T ss_pred             CCeeeccCeeccCcccccCCCccccchHHHHHHHHHHHHHHHHhCCCeEEecC--CCccCcCHHHHHHHHHHc----CCc
Confidence            99999999832  211      1121   1   22335577899999999984  222235555555554432    123


Q ss_pred             EEEeccccCCC-------------ccchHHHHHHHH----cCC-------cEEEEecccCCCCCCCCCCHHHHHHHHHHH
Q 013050          108 VGFWGGLVPEN-------------AYNASALEALLN----AGV-------LGLKSFMCPSGINDFPMTNASHIKEGLSVL  163 (450)
Q Consensus       108 ~~~~~~~~~~~-------------~~~~~~~~~~~~----~g~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a  163 (450)
                      +....++.+..             ....+.+.+++.    .|+       ..++....+.   .......+.+++.+++|
T Consensus       106 i~~~tG~hp~~~~~~~~~~~~~~~~~~~~~L~~~~~~e~~~gIg~tg~k~g~IEigld~~---~~~~~q~~~f~aq~~lA  182 (339)
T 3gtx_A          106 ILCATGFYYEGGGATTYFKFRASLGDAESEIYEMMRTEVTEGIAGTGIRAGVIKLASSRD---AITPYEQLFFRAAARVQ  182 (339)
T ss_dssp             EECEECCCCTTTSSCHHHHHHHHHSCHHHHHHHHHHHHHHTCSTTSSCCCSEEEEECCSS---CCCHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCccCccCCcCCcccccccCCHHHHHHHHHHHHHhcccccCcccceEEEEcCCC---CCCHHHHHHHHHHHHHH
Confidence            32222232211             112344443332    111       2224333331   11123445678889999


Q ss_pred             HhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhH
Q 013050          164 ARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS  243 (450)
Q Consensus       164 ~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~  243 (450)
                      ++.|+||.+|......                               ..+ .++++++..    .+..++.+.|+... .
T Consensus       183 ~~~glPViiH~~~gr~-------------------------------a~~-~~~iL~~~~----~~~~~~vi~H~~~~-~  225 (339)
T 3gtx_A          183 RETGVPIITHTQEGQQ-------------------------------GPQ-QAELLTSLG----ADPARIMIGHMDGN-T  225 (339)
T ss_dssp             HHHCCCEEEECSTTCC-------------------------------HHH-HHHHHHHTT----CCGGGEEECCGGGC-C
T ss_pred             HHHCCeEEEeCCCCcC-------------------------------HHH-HHHHHHHcC----CCcccEEEEccCCC-C
Confidence            9999999999932100                               012 355555430    01234556899732 5


Q ss_pred             HHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCe--eEEcCCCCCCChhhhc
Q 013050          244 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI--DMLSSDHSPTVPELKL  321 (450)
Q Consensus       244 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~--~~~gtD~~~~~~~~~~  321 (450)
                      +.+..+++.+.|..+........             .+...|  ........+.+.++.+..  +.+.||..-.....+.
T Consensus       226 ~~e~a~~~l~~G~~i~~~g~~t~-------------~~~~~p--~~~~~~~~l~~li~~~~~drilleTD~p~~~~~~P~  290 (339)
T 3gtx_A          226 DPAYHRETLRHGVSIAFDRIGLQ-------------GMVGTP--TDAERLSVLTTLLGEGYADRLLLSHDSIWHWLGRPP  290 (339)
T ss_dssp             CHHHHHHHHTTTCEEEECCTTCC-------------SSTTCC--CHHHHHHHHHHHHHTTCGGGEEECCCCEEEESSSCC
T ss_pred             CHHHHHHHHHcCcEEEEccCccc-------------cccCCC--chHHHHHHHHHHHHhcCCCeEEEecCCCccccCCcc
Confidence            57888888888865555321000             000000  011334456666666653  6899995311000000


Q ss_pred             ccCCCccc-cCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhC
Q 013050          322 LDEGNFLK-AWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG  371 (450)
Q Consensus       322 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg  371 (450)
                      .  .+... ...+.......+......+...|+|.+++.++.|.||+++|+
T Consensus       291 ~--~p~~~~~~~g~n~p~~l~~~~~~~~~~~Gis~e~i~~~~~~Np~rlf~  339 (339)
T 3gtx_A          291 A--IPEAALPAVKDWHPLHISDDILPDLRRRGITEEQVGQMTVGNPARLFG  339 (339)
T ss_dssp             C--CCGGGHHHHHTCSTTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHHC
T ss_pred             c--ccccccccCCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            0  00000 000112233333444445667899999999999999999985

>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15

Probab=98.34  E-value=1.1e-05  Score=73.21  Aligned_cols=248  Identities=15%  Similarity=0.087  Sum_probs=131.0

Q ss_pred             cceeeccccCCCCCC----------cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEe
Q 013050           42 GLIDVHAHLDDPGRT----------EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW  111 (450)
Q Consensus        42 G~iD~H~H~~~~~~~----------~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (450)
                      ++||+|+|+..+...          ...+.....+.+...||+..+..+.... ..... .+....+....+    +...
T Consensus        13 ~iID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~~~~~-~~~n~-~~~~~~~~~p~r----~~~~   86 (288)
T 2ffi_A           13 TAIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFL-GTDNR-YLLSALQTVPGQ----LRGV   86 (288)
T ss_dssp             CCEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHHTSCCEECCBCCGGG-TTCCH-HHHHHHHHSTTT----BCCB
T ss_pred             CceeecccccCCCCCCCCcccCCCCCCCCHHHHHHHHHHhCCCeEEEECCccc-cccHH-HHHHHHHHCCCC----EEEE
Confidence            799999999754210          0123556667788899998776541111 11222 222222222111    1111


Q ss_pred             ccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcC
Q 013050          112 GGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL  191 (450)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~  191 (450)
                      .++.+..  ..++++++.+.|+.+++....+.+   .+....+.+...++.|+++|++|.+|.....             
T Consensus        87 ~~v~p~~--~~~el~~~~~~g~~Gi~~~~~~~~---~~~~~~~~~~~~~~~a~~~~lpv~iH~~~~~-------------  148 (288)
T 2ffi_A           87 VMLERDV--EQATLAEMARLGVRGVRLNLMGQD---MPDLTGAQWRPLLERIGEQGWHVELHRQVAD-------------  148 (288)
T ss_dssp             BCCCSSC--CHHHHHHHHTTTCCEEECCCSSSC---CCCTTSTTTHHHHHHHHHHTCEEEECSCTTT-------------
T ss_pred             EEeCCCC--CHHHHHHHHHCCCeEEEEecccCC---CCCcccHHHHHHHHHHHHCCCeEEEeechhh-------------
Confidence            2222222  246778888889999977554321   1234567789999999999999999995421             


Q ss_pred             CccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhH-------HHHHHHHHHhCCCcEEEecCc
Q 013050          192 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS-------SLDLLMEAKTNGDSITVETCP  264 (450)
Q Consensus       192 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~-------~~~~~~~~~~~g~~v~~~~~~  264 (450)
                                          +..+..++++      ++ .++.+.|+.....       ..+.+..+.+. ..+++.++.
T Consensus       149 --------------------~~~~~~~~~~------~p-l~~vi~H~g~~~~~~~~~~~~~~~~~~l~~~-~n~y~~~sg  200 (288)
T 2ffi_A          149 --------------------IPVLVRALQP------YG-LDIVIDHFGRPDARRGLGQPGFAELLTLSGR-GKVWVKVSG  200 (288)
T ss_dssp             --------------------HHHHHHHHTT------TT-CCEEESGGGSCCTTSCTTCTTHHHHTTCCCC-SCEEEEEEC
T ss_pred             --------------------HHHHHHHHHH------CC-CCEEEECCCCCCCCCCCCChhHHHHHHHHhC-CCEEEEeCc
Confidence                                2345566665      34 6777789876411       12333322111 124443332


Q ss_pred             chhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhc-CC-eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHH
Q 013050          265 HYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD-GH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP  342 (450)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  342 (450)
                      ......             ..+.........+...++. |. .+++|||+ |.....             ...    .+.
T Consensus       201 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~g~drll~gSD~-P~~~~~-------------~~~----~~~  249 (288)
T 2ffi_A          201 IYRLQG-------------SPEENLAFARQALCALEAHYGAERLMWGSDW-PHTQHE-------------SEV----SFG  249 (288)
T ss_dssp             GGGSSS-------------CHHHHHHHHHHHHHHHHHHTCGGGEEEECCT-TCTTCT-------------TTC----CHH
T ss_pred             chhhcc-------------ccCCCHHHHHHHHHHHHHHhCCCceEEecCC-CCCCCC-------------CCC----CHH
Confidence            111000             0000000111233344343 43 47899995 442110             000    122


Q ss_pred             HHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          343 VTWSYGRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       343 ~~~~~~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      ..++.+.+.+++.++.-+....|+++++++
T Consensus       250 ~~~~~~~~~~~~~~~~~~i~~~NA~rl~~l  279 (288)
T 2ffi_A          250 SAVEQFEALGCSAQLRQALLLDTARALFGF  279 (288)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHTHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHCHHHHhCc
Confidence            333445556679999999999999999998

>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304}

Probab=98.28  E-value=8.6e-06  Score=72.32  Aligned_cols=121  Identities=15%  Similarity=0.169  Sum_probs=63.0

Q ss_pred             ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHH---HHHHHHH----HHhcCCceEEEEecccc
Q 013050           43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTE---TLKLKVD----AAEKRIYVDVGFWGGLV  115 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~  115 (450)
                      |||+|+|+....      +. ....+..+||+.++..+...........   .+....+    .+... ...+....++.
T Consensus         2 ~iDtH~Hld~~~------~~-~l~~a~~~GV~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~-~~~v~~~~GiH   73 (261)
T 3guw_A            2 YFDSHLHSEGLG------FS-ELVKLKENGIKEVCSLAFFPVKPKYPQTMIDVFRKLTEFEPLRCEAA-GVKMHPAVGIH   73 (261)
T ss_dssp             CCBCCCCGGGCC------HH-HHHHHHTTSCCEECCBCCCSSCCSSHHHHHHHHHHHHHTHHHHHHTT-TCEECCBCCCC
T ss_pred             eEEeccCCCCCC------hH-HHHHHHHCCCcEEEEeccCccccchhhhHHHHHHHHHHHHHHHHHHC-CCCEEEEEEEC
Confidence            799999998654      22 3567889999999876522111111111   1112221    12221 22333333333


Q ss_pred             CCCc--cchHHHHHHHHcCCcEEEEe-cccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 013050          116 PENA--YNASALEALLNAGVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM  176 (450)
Q Consensus       116 ~~~~--~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~  176 (450)
                      +...  ...+.+..+.+..+.++... ..+     ......+.+++.+++|+++++||.+|.+.
T Consensus        74 P~~~~~~~~~~~~~l~~~~vvaIGEiGLD~-----~~~~Q~~~f~~ql~lA~e~~lPv~iH~r~  132 (261)
T 3guw_A           74 PRCIPPDYEFVLGYLEEGEWVAFGEIGLEL-----VTDEEIEVLKSQLELAKRMDVPCIIHTPR  132 (261)
T ss_dssp             GGGCCTTTHHHHHHHTTSCCSCEEEEECSS-----CCHHHHHHHHHHHHHHHHHTCCEEEECCS
T ss_pred             cccccccHHHHHHHhCcCCeEEEEEecCCC-----ChHHHHHHHHHHHHHHHHhCCeEEEEcCC
Confidence            3221  12233333433445444321 222     11234467889999999999999999964

>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A*

Probab=98.26  E-value=2.5e-05  Score=72.33  Aligned_cols=135  Identities=16%  Similarity=0.148  Sum_probs=76.6

Q ss_pred             eccceeeccccCCCCCCcc-----------------cch-HHHHHHHHhCCceEEEeCCCCCCCCC---CcH--------
Q 013050           40 MPGLIDVHAHLDDPGRTEW-----------------EGF-PSGTKAAAAGGITTLIDMPLNSDPST---IST--------   90 (450)
Q Consensus        40 ~PG~iD~H~H~~~~~~~~~-----------------~~~-~~~~~~~~~~GvT~~~~~~~~~~~~~---~~~--------   90 (450)
                      |+++||+|+|+..+.....                 .+. ....+.+.+.||...+..+ .. +..   ...        
T Consensus         1 m~~~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~-~~-p~~~~~~d~~~~~~~~~   78 (327)
T 2dvt_A            1 MQGKVALEEHFAIPETLQDSAGFVPGDYWKELQHRLLDIQDTRLKLMDAHGIETMILSL-NA-PAVQAIPDRRKAIEIAR   78 (327)
T ss_dssp             CCSEEEEEEEECCHHHHGGGTTTSCSSHHHHHHHHHHCSSSHHHHHHHHTTEEEEEEEE-CS-SGGGGCCCHHHHHHHHH
T ss_pred             CCCeEEEecccCCHHHHHHHhccCCcccccccchhcCChhHHHHHHhhhcCCcEEEEeC-CC-CcccccCChHHHHHHHH
Confidence            5789999999975432110                 023 4566778889999887653 11 111   011        


Q ss_pred             HHHHHHHHHHhcCCceEEEEeccccCCCc-cchHHHHHHHH-cCCcEEEEecccCCC--CCCCCCCHHHHHHHHHHHHhc
Q 013050           91 ETLKLKVDAAEKRIYVDVGFWGGLVPENA-YNASALEALLN-AGVLGLKSFMCPSGI--NDFPMTNASHIKEGLSVLARY  166 (450)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~a~~~  166 (450)
                      ..-....+..... +-++...+.+..... ...++++++++ .|+.+++....+...  ........+.+...++.|+++
T Consensus        79 ~~n~~~~~~~~~~-p~r~~~~~~v~p~~~~~~~~el~~~~~~~g~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  157 (327)
T 2dvt_A           79 RANDVLAEECAKR-PDRFLAFAALPLQDPDAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKL  157 (327)
T ss_dssp             HHHHHHHHHHHHC-TTTEEEEECCCTTSHHHHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC-CCceEEEeecCcCCHHHHHHHHHHHHhcCCceEEEECCCCCCCcccCCCCCCCcchHHHHHHHHHc
Confidence            1111122222221 112222333444333 25677777765 599999876543210  001235667899999999999


Q ss_pred             CCcEEEecCCh
Q 013050          167 KRPLLVHAEME  177 (450)
Q Consensus       167 g~~v~~H~~~~  177 (450)
                      |++|.+|....
T Consensus       158 ~lpv~iH~~~~  168 (327)
T 2dvt_A          158 DVPFYLHPRNP  168 (327)
T ss_dssp             TCCEEEECCCC
T ss_pred             CCeEEECCCCC
Confidence            99999999643

>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}

Probab=98.17  E-value=3.8e-05  Score=71.78  Aligned_cols=40  Identities=15%  Similarity=0.067  Sum_probs=32.1

Q ss_pred             ccceeeccccCCCCCC--------cccchHHHHHHHHhCCceEEEeCC
Q 013050           41 PGLIDVHAHLDDPGRT--------EWEGFPSGTKAAAAGGITTLIDMP   80 (450)
Q Consensus        41 PG~iD~H~H~~~~~~~--------~~~~~~~~~~~~~~~GvT~~~~~~   80 (450)
                      +-|||+|+|+..+.+.        ..+++......+...||..++..+
T Consensus        12 ~~~iDih~nL~d~~f~g~y~~~~~h~~D~~~vl~rA~~~GV~~ii~~g   59 (401)
T 3e2v_A           12 LKYYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTG   59 (401)
T ss_dssp             CCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECC
T ss_pred             CCeEEEEeCcCcHHHhhhccccccCccCHHHHHHHHHHCCCCEEEEec
Confidence            5799999999876543        125688888999999999998886

>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*

Probab=98.16  E-value=0.00023  Score=65.96  Aligned_cols=260  Identities=16%  Similarity=0.151  Sum_probs=132.7

Q ss_pred             cceeeccccCC--CCCC------ccc---c---hHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceE
Q 013050           42 GLIDVHAHLDD--PGRT------EWE---G---FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD  107 (450)
Q Consensus        42 G~iD~H~H~~~--~~~~------~~~---~---~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (450)
                      |++.+|-|+..  ++..      .+.   .   .....+.+.+.|+.|+++.. .. ..-.....+....+..    .++
T Consensus        52 G~tl~HEHl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~Gg~tIVd~T-~~-g~GRd~~~l~~is~~t----Gv~  125 (360)
T 3tn4_A           52 GKTLIHEHFLFGYPGFQGDVTRGTFREDESLRVAVEAAEKMKRHGIQTVVDPT-PN-DCGRNPAFLRRVAEET----GLN  125 (360)
T ss_dssp             CSEESSCEEEECCTTGGGGTTTSCCCHHHHHHHHHHHHHHHHHTTCCEEEECC-CT-TTTCCHHHHHHHHHHH----CCE
T ss_pred             CCceeccCeeecChhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeEEECC-CC-CcCcCHHHHHHHHHHc----CCC
Confidence            99999999732  2211      010   1   22235567899999999984 22 2234455555444332    445


Q ss_pred             EEEeccccCCC---c----------cchHHHHHH----HHcCCc--EE-----EEecccCCCCCCCCCCHHHHHHHHHHH
Q 013050          108 VGFWGGLVPEN---A----------YNASALEAL----LNAGVL--GL-----KSFMCPSGINDFPMTNASHIKEGLSVL  163 (450)
Q Consensus       108 ~~~~~~~~~~~---~----------~~~~~~~~~----~~~g~~--~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~a  163 (450)
                      +....++....   +          ...+.+.++    +..|+.  ++     +...++   ..........++..+++|
T Consensus       126 IV~~TG~y~~~~~~p~~~~~~~~~~~~~e~l~~~~i~Ei~~Gi~~tgikaG~I~~~~~~---~~~t~~E~k~frA~a~aa  202 (360)
T 3tn4_A          126 IICATGYYYEGEGAPPYFQFRRLLGTAEDDIYDMFMAELTEGIADTGIKAGVIKLASSK---GRITEYEKMFFRAAARAQ  202 (360)
T ss_dssp             EEEEECCCCGGGSCTHHHHHHHHHTCHHHHHHHHHHHHHHTCSTTSCCCCSEEEEECBT---TBCCHHHHHHHHHHHHHH
T ss_pred             EEEeCccccCcccCCcccchhhhcccCHHHHHHHHHHHHHhccccCCCcceEEEEEccC---CCCCHHHHHHHHHHHHHH
Confidence            44333322111   0          011222222    233432  22     221111   111223345688889999


Q ss_pred             HhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEec-CChh
Q 013050          164 ARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL-SDAS  242 (450)
Q Consensus       164 ~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~-~~~~  242 (450)
                      ++.|+||.+|.+....                               .. +.++++++.  +  ....++.+.|+ .+  
T Consensus       203 ~etG~Pv~iHt~~~~~-------------------------------~~-e~l~iL~ee--G--~~~~~vvi~H~~~~--  244 (360)
T 3tn4_A          203 KETGAVIITHTQEGTM-------------------------------GP-EQAAYLLEH--G--ADPKKIVIGHMCDN--  244 (360)
T ss_dssp             HHHCCEEEEECSTTCC-------------------------------HH-HHHHHHHHT--T--CCGGGEEECCGGGC--
T ss_pred             HHhCCcEEEEcCcccC-------------------------------CH-HHHHHHHHc--C--CCCCceEEEcCCCC--
Confidence            9999999999954321                               01 122233332  0  01235667785 44  


Q ss_pred             HHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCe--eEEcCCCC------C
Q 013050          243 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI--DMLSSDHS------P  314 (450)
Q Consensus       243 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~--~~~gtD~~------~  314 (450)
                      .+.+..+++.+.|..+..+..-...             ....|  ......+.+.+..+.|..  +.+++|..      |
T Consensus       245 ~d~~~~~~~l~~G~yl~fD~iG~~~-------------~~~~p--~d~~r~~~l~~lv~~g~~drILLstDa~~~~~~~p  309 (360)
T 3tn4_A          245 TDPDYHRKTLAYGVYIAFDRFGIQG-------------MVGAP--TDEERVRTLLALLRDGYEKQIMLSHDTVNVWLGRP  309 (360)
T ss_dssp             CCHHHHHHHHTTTCEEEECCTTCCC-------------STTCC--CHHHHHHHHHHHHHTTCGGGEEECCCCEEEESSSC
T ss_pred             CCHHHHHHHHHcCCEEEEccccccc-------------ccCCC--ChHHHHHHHHHHHHhcCcceEEEecCCCcccccCC
Confidence            5667888888888766554211000             00000  012334456666676653  78999952      2


Q ss_pred             CChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHh
Q 013050          315 TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLA  370 (450)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~l  370 (450)
                      .........      .. +-.+....+...+-.+++.|+|.+++-++.+.||+++|
T Consensus       310 y~~p~p~r~------~~-~~~~y~~i~~~~ip~L~~~Gvs~e~I~~i~~~NP~rlf  358 (360)
T 3tn4_A          310 FTLPEPFAE------MM-KNWHVEHLFVNIIPALKNEGIRDEVLEQMFIGNPAALF  358 (360)
T ss_dssp             CCCCHHHHH------HT-TTCSTTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHH
T ss_pred             CCCcccccc------cC-CCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHhHHHHh
Confidence            211111000      00 11222333344444567789999999999999999987

>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A

Probab=98.03  E-value=6.3e-05  Score=70.67  Aligned_cols=144  Identities=16%  Similarity=0.097  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCce
Q 013050          153 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH  232 (450)
Q Consensus       153 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~  232 (450)
                      ++.+.++++.|+++|+++.+|+.+...                      +.|.    ..+...+.+.          +..
T Consensus       214 ~~~~~~~~~~A~~~gl~~~~HagE~~~----------------------~~~~----~~i~~al~~l----------g~~  257 (371)
T 2pgf_A          214 LKEYKEIFDYVRESGVPLSVHAGEDVT----------------------LPNL----NTLYSAIQVL----------KVE  257 (371)
T ss_dssp             GGGGHHHHHHHHHTTCCBEEEESCCTT----------------------SSSS----HHHHHHHHTS----------CCS
T ss_pred             HHHHHHHHHHHHHcCCcEEEeeCCCCC----------------------CCch----HHHHHHHhcc----------CCC
Confidence            678999999999999999999954310                      0010    1122222221          222


Q ss_pred             EEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCC
Q 013050          233 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDH  312 (450)
Q Consensus       233 ~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~  312 (450)
                       .+.|+....+..+.++.+++.++.+.+  ||.........           +.    ....++.++++.|+.+++|||.
T Consensus       258 -ri~Hgv~l~~~~~l~~~l~~~~i~v~~--cP~SN~~l~~~-----------~~----~~~~pi~~ll~~Gv~V~lgTD~  319 (371)
T 2pgf_A          258 -RIGHGIRVAESQELIDMVKEKNILLEV--CPISNVLLKNA-----------KS----MDTHPIRQLYDAGVKVSVNSDD  319 (371)
T ss_dssp             -EEEECGGGGGCHHHHHHHHHTTCEEEE--CHHHHHHTTSS-----------SC----GGGCTHHHHHHTTCEEEECCBC
T ss_pred             -EEecchhccccHHHHHHHHHcCCeEEE--CcchhHHhCCC-----------Cc----cccChHHHHHHCCCeEEEeCCC
Confidence             356665432444567778888876554  77654322100           00    0112356778999999999995


Q ss_pred             CCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          313 SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      ...+                +    . .+...+.. ....++|++++ +.+|.|++++..+
T Consensus       320 ~~~~----------------~----~-~l~~e~~~a~~~~~l~~~~l-~~lt~ns~~asf~  358 (371)
T 2pgf_A          320 PGMF----------------L----T-NINDDYEELYTHLNFTLEDF-MKMNEWALEKSFM  358 (371)
T ss_dssp             HHHH----------------T----C-CHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHCCS
T ss_pred             Cccc----------------C----C-CHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHcC
Confidence            3211                1    0 12222233 33468999996 8889999999887

>4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A

Probab=97.91  E-value=0.00014  Score=66.47  Aligned_cols=249  Identities=12%  Similarity=0.028  Sum_probs=133.0

Q ss_pred             ceeeccccCCCC---CCcc----------cchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEE
Q 013050           43 LIDVHAHLDDPG---RTEW----------EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVG  109 (450)
Q Consensus        43 ~iD~H~H~~~~~---~~~~----------~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (450)
                      .||+|+|+..+.   ..+.          -........+..+||+.++-.. ..    ..........+.+... ..-++
T Consensus         5 ~iD~H~H~~~~~~~~~pw~~~~~~~~~~~~~~~~ll~~~~~~GV~~~V~v~-~~----~~~~~n~~l~~la~~~-p~~~g   78 (303)
T 4do7_A            5 RIDSHQHFWRYRAADYPWIGAGMGVLARDYLPDALHPLMHAQALGASIAVQ-AR----AGRDETAFLLELACDE-ARIAA   78 (303)
T ss_dssp             CEEEEECCBCCCGGGCTTCCTTCGGGSSCBCHHHHHHHHHHTTCCEEEEEC-CS----SSHHHHHHHHHHHTTC-TTEEE
T ss_pred             EEeCCEecccCCCCCCCCCCCccccccCCCCHHHHHHHHHhcCCcEEEEEc-cC----CcHHHHHHHHHHHHhC-CCeEE
Confidence            499999997642   1111          1244556677889999988764 11    1122233333333322 21222


Q ss_pred             EeccccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCC--CCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhc
Q 013050          110 FWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFP--MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLE  187 (450)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~  187 (450)
                      ..+.+....++..++++++.+.|+.|++......   ..+  ....+.+...++.++++|++|.+|.....         
T Consensus        79 ~vg~v~~~~~~~~~~L~~l~~~gv~Gir~~~~~~---~~~~~~~~~~~~~~~~~~~~~~glpv~ih~~~~~---------  146 (303)
T 4do7_A           79 VVGWEDLRAPQLAERVAEWRGTKLRGFRHQLQDE---ADVRAFVDDADFARGVAWLQANDYVYDVLVFERQ---------  146 (303)
T ss_dssp             EEECCCTTCTTHHHHHTTCCSSCEEEEECCGGGS---SCHHHHHHCHHHHHHHHHHHHTTCEEEECCCGGG---------
T ss_pred             EEEEeCCCCchHHHHHHHHhhcCceEEEecCcCC---CCccccccCHHHHHHHHHHHHCCCeEEEecCHHH---------
Confidence            2222222333345556666667888888654221   111  24456788999999999999999995432         


Q ss_pred             cCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChh--------HH----HHHHHHHHhCC
Q 013050          188 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--------SS----LDLLMEAKTNG  255 (450)
Q Consensus       188 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~--------~~----~~~~~~~~~~g  255 (450)
                                              +..+.+++++      +++.++.+.|+....        ..    .+.+..+.+. 
T Consensus       147 ------------------------l~~l~~ll~~------~P~l~iVi~H~G~p~~~~~~~~~~~~~~w~~~l~~la~~-  195 (303)
T 4do7_A          147 ------------------------LPDVQAFCAR------HDAHWLVLDHAGKPALAEFDRDDTALARWRAALRELAAL-  195 (303)
T ss_dssp             ------------------------HHHHHHHHHH------CCSSCEEEGGGGCCCGGGCC---CHHHHHHHHHHHHHTS-
T ss_pred             ------------------------HHHHHHHHHH------CCCCCEEEeCCCCCCccccccccchHHHHHHHHHHHHhC-
Confidence                                    3456667765      568899999998631        01    1234444332 


Q ss_pred             CcEEEecCcchhcccccccCCCCCceEEcCCCCC--hhhHH-HHHHHHhc-C-CeeEEcCCCCCCChhhhcccCCCcccc
Q 013050          256 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD--AANKE-KLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKA  330 (450)
Q Consensus       256 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~l~~~~~~-g-~~~~~gtD~~~~~~~~~~~~~~~~~~~  330 (450)
                      ..+++.++..+......            ...+.  ..... .+...++. | -.+++|||+ |.....           
T Consensus       196 ~nv~~klSg~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~G~dri~fgSD~-P~~~~~-----------  251 (303)
T 4do7_A          196 PHVVCKLSGLVTEADWR------------RGLRASDLRHIEQCLDAALDAFGPQRLMFGSDW-PVCLLA-----------  251 (303)
T ss_dssp             TTEEEEECSCGGGSCTT------------TCCCHHHHHHHHHHHHHHHHHHCGGGEEECCCB-TGGGGT-----------
T ss_pred             CCEEEEeCCcccccccc------------ccccCCCHHHHHHHHHHHHHHhCcccEEEeCCC-CCCcCc-----------
Confidence            34676655432211000            00000  11111 12222322 3 347899994 432111           


Q ss_pred             CCCCcchhhHHHHHHHHHHh---cCCCHHHHHHHHhhchhHHhCC
Q 013050          331 WGGISSLQFVLPVTWSYGRK---YGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       331 ~~g~~~~~~~~~~~~~~~~~---~gls~~~al~~aT~~~A~~lg~  372 (450)
                        +      .+...+..+.+   .+++.++.=+....|+++++|+
T Consensus       252 --~------~~~~~~~~~~~~~~~~l~~~~~~~i~~~Na~rl~~l  288 (303)
T 4do7_A          252 --A------SYDEVASLVERWAESRLSAAERSALWGGTAARCYAL  288 (303)
T ss_dssp             --C------CHHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHTTC
T ss_pred             --C------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC
Confidence              0      01222222222   4689999999999999999999

>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15

Probab=97.86  E-value=0.0011  Score=60.49  Aligned_cols=130  Identities=12%  Similarity=0.022  Sum_probs=73.6

Q ss_pred             ceeeccccCCCCCC----------------cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcH--------HHHHHHHH
Q 013050           43 LIDVHAHLDDPGRT----------------EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST--------ETLKLKVD   98 (450)
Q Consensus        43 ~iD~H~H~~~~~~~----------------~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~--------~~~~~~~~   98 (450)
                      +||+|+|+..+...                ...+.....+.+.+.||...+..+..........        ..-....+
T Consensus         3 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~~~~~~~~~~~~~~~~~~~~~n~~~~~   82 (307)
T 2f6k_A            3 KIDFHTHYLPTSYVEALKRHVPGDPDGWPTPEWTPQLTLNFMRDNDISYSILSLSSPHVNFGDKAETIRLVEAANDDGKS   82 (307)
T ss_dssp             EEEEEEECCCHHHHHHHHHHCCSSGGGSCCCCCCHHHHHHHHHHTTEEEEEEECCSSCSCSSCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecCcCCHHHHHHHHHhccCCcccCcCCCCCHHHHHHHHHHcCCCEEEEeCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence            79999999754211                0123556677888999999766531100001111        11111222


Q ss_pred             HHhcCCceEEEEeccccCCC-ccchHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 013050           99 AAEKRIYVDVGFWGGLVPEN-AYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM  176 (450)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~  176 (450)
                      ..... +-++...+.+.... ....++++++++ .|+.+++....+.+    .....+.+...++.|+++|++|.+|...
T Consensus        83 ~~~~~-p~r~~~~~~~p~~~~~~~~~el~~~~~~~g~~gi~~~~~~~~----~~~~~~~~~~~~~~a~~~~lpv~iH~~~  157 (307)
T 2f6k_A           83 LAQQY-PDQLGYLASLPIPYELDAVKTVQQALDQDGALGVTVPTNSRG----LYFGSPVLERVYQELDARQAIVALHPNE  157 (307)
T ss_dssp             HHHHC-TTTEEEEECCCTTCHHHHHHHHHHHHHTSCCSEEEEESEETT----EETTCGGGHHHHHHHHTTTCEEEEECCC
T ss_pred             HHHhC-ccceeEEEeCCCCCHHHHHHHHHHHHhccCCcEEEEeccCCC----CCCCcHhHHHHHHHHHHcCCeEEECCCC
Confidence            22221 11223333232222 344677777775 69999977654421    1234577899999999999999999964


Q ss_pred             h
Q 013050          177 E  177 (450)
Q Consensus       177 ~  177 (450)
                      .
T Consensus       158 ~  158 (307)
T 2f6k_A          158 P  158 (307)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0

Probab=97.62  E-value=0.00099  Score=61.45  Aligned_cols=157  Identities=15%  Similarity=0.059  Sum_probs=94.3

Q ss_pred             cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHH
Q 013050          131 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA  210 (450)
Q Consensus       131 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  210 (450)
                      .++.|+......      ...+.+.+.++++.|+++|+++.+|+.+...                             ..
T Consensus       163 ~~vvG~dL~g~E------~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~-----------------------------~~  207 (343)
T 3rys_A          163 APIAGIGLDSAE------VGNPPSKFERLYQRAAEAGLRRIAHAGEEGP-----------------------------AS  207 (343)
T ss_dssp             CCCCEEEEESCC------TTCCGGGGHHHHHHHHHTTCEEEEEESSSSC-----------------------------HH
T ss_pred             CCEEEEecCCcc------cCCCHHHHHHHHHHHHHCCCeEEEeeCCCCC-----------------------------HH
Confidence            567777664321      1245678899999999999999999954321                             11


Q ss_pred             HHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCCh
Q 013050          211 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA  290 (450)
Q Consensus       211 ~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (450)
                      .+..++.++.          . -.+.|+....+..+.++.+++.++.+.+  ||........ +          +.    
T Consensus       208 ~i~~al~~lg----------~-~rIgHgv~l~~d~~l~~~l~~~~i~le~--cP~SN~~l~~-~----------~~----  259 (343)
T 3rys_A          208 YITEALDVLH----------V-ERIDHGIRCMEDTDVVQRLVAEQVPLTV--CPLSNVRLRA-V----------DK----  259 (343)
T ss_dssp             HHHHHHHTSC----------C-SEEEECGGGGGCHHHHHHHHHHTCCEEE--CHHHHHHTTS-S----------SC----
T ss_pred             HHHHHHhcCC----------c-ceeeeeeeecCChHHHHHHHhcCCCeeE--chhHHHHhCC-C----------CC----
Confidence            2333333221          1 1356665432335677777777876655  7765433211 0          00    


Q ss_pred             hhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHH
Q 013050          291 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKL  369 (450)
Q Consensus       291 ~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~  369 (450)
                      ....++.++++.|++++++||.......                     .+...+.. ....|++++++ +..|.|+.++
T Consensus       260 ~~~hPi~~ll~~Gv~V~l~TDdp~~~~~---------------------~l~~E~~~a~~~~~l~~~~l-~~l~~nsi~~  317 (343)
T 3rys_A          260 LADHPLPEMLAIGLNVCVNSDDPAYFGG---------------------YVDDNFEQLVKVLEFSVPEQ-ATLAANSIRS  317 (343)
T ss_dssp             GGGCSHHHHHHTTCCEEECCBSTTTTTC---------------------CHHHHHHHHHHHHCCCHHHH-HHHHHHHHHH
T ss_pred             cccchHHHHHHCCCeEEEeCCCccccCC---------------------CHHHHHHHHHHHcCCCHHHH-HHHHHHHHHH
Confidence            0112356778899999999996533211                     12223333 34469999995 7778999988


Q ss_pred             hCC
Q 013050          370 AGQ  372 (450)
Q Consensus       370 lg~  372 (450)
                      ..+
T Consensus       318 sf~  320 (343)
T 3rys_A          318 SFA  320 (343)
T ss_dssp             SSS
T ss_pred             HCC
Confidence            766

>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...

Probab=97.60  E-value=0.00071  Score=62.94  Aligned_cols=160  Identities=13%  Similarity=0.043  Sum_probs=92.6

Q ss_pred             cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHH
Q 013050          131 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA  210 (450)
Q Consensus       131 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  210 (450)
                      .++.|+.......   +.|....+.+.++++.|++.|+++.+|+.+...                             .+
T Consensus       172 ~~vvG~dL~g~E~---~~~~~~~~~f~~~f~~A~~~gl~~~~HagE~~~-----------------------------~~  219 (367)
T 3iar_A          172 QTVVAIDLAGDET---IPGSSLLPGHVQAYQEAVKSGIHRTVHAGEVGS-----------------------------AE  219 (367)
T ss_dssp             TTEEEEEEESCTT---STTGGGCHHHHHHHHHHHHHTCEEEEEESSSSC-----------------------------HH
T ss_pred             CCEEEEcCCCccc---CCCcchHHHHHHHHHHHHHcCCeeEEecCCcCC-----------------------------hH
Confidence            5677776643211   111111268899999999999999999954321                             11


Q ss_pred             HHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCCh
Q 013050          211 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA  290 (450)
Q Consensus       211 ~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (450)
                      .+..++..+          +. -.+.|+....+..+.++.+++.++.+.+  ||........           .+.+   
T Consensus       220 ~i~~al~~l----------g~-~RIgHgv~l~~d~~l~~~l~~~~i~le~--cP~SN~~l~~-----------~~~~---  272 (367)
T 3iar_A          220 VVKEAVDIL----------KT-ERLGHGYHTLEDQALYNRLRQENMHFEI--CPWSSYLTGA-----------WKPD---  272 (367)
T ss_dssp             HHHHHHHTS----------CC-SEEEECGGGGGCHHHHHHHHHTTCEEEE--CHHHHHHTSS-----------SCTT---
T ss_pred             HHHHHHHcc----------CC-ceeeeeeeecCCHHHHHHHHhCCcEEEE--CHHHHHHhCC-----------CCCc---
Confidence            222223221          11 1356665432445677888888866554  8865433211           0111   


Q ss_pred             hhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHH
Q 013050          291 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKL  369 (450)
Q Consensus       291 ~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~~al~~aT~~~A~~  369 (450)
                       ....+..+++.|++++++||.....                +.     .+...+..+ ...|+++++ ++..|.|++++
T Consensus       273 -~~hPi~~ll~~Gv~v~l~TDdp~~~----------------~~-----~l~~e~~~a~~~~glt~~e-l~~l~~nsi~~  329 (367)
T 3iar_A          273 -TEHAVIRLKNDQANYSLNTDDPLIF----------------KS-----TLDTDYQMTKRDMGFTEEE-FKRLNINAAKS  329 (367)
T ss_dssp             -SCCHHHHHHHTTCCEEECCBSHHHH----------------TC-----CHHHHHHHHHHHHCCCHHH-HHHHHHHHHHT
T ss_pred             -ccChHHHHHHCCCEEEECCCCcccc----------------CC-----CHHHHHHHHHHHcCCCHHH-HHHHHHHHHHH
Confidence             1124667788999999999953211                10     133333333 456999999 66778999887


Q ss_pred             hCC
Q 013050          370 AGQ  372 (450)
Q Consensus       370 lg~  372 (450)
                      ..+
T Consensus       330 sf~  332 (367)
T 3iar_A          330 SFL  332 (367)
T ss_dssp             SSS
T ss_pred             hCC
Confidence            665

>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*

Probab=97.34  E-value=0.00032  Score=64.28  Aligned_cols=157  Identities=16%  Similarity=0.065  Sum_probs=90.9

Q ss_pred             cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHH
Q 013050          131 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA  210 (450)
Q Consensus       131 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  210 (450)
                      .++.++......      ...+++.+.++++.|++.|+++.+|+.+...                             ..
T Consensus       160 ~~vvG~dL~g~E------~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~-----------------------------~~  204 (326)
T 3pao_A          160 DAFIAVGLDSSE------VGHPPSKFQRVFDRARSEGFLTVAHAGEEGP-----------------------------PE  204 (326)
T ss_dssp             GGCSEEEEESCC------TTCCGGGGHHHHHHHHHTTCEECEEESSSSC-----------------------------HH
T ss_pred             ccceeeCCCCCC------CCCCHHHHHHHHHHHHHcCCceeeecCCCCC-----------------------------HH
Confidence            367777664321      1245678889999999999999999954321                             11


Q ss_pred             HHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCCh
Q 013050          211 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA  290 (450)
Q Consensus       211 ~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (450)
                      .+..+++.+..        ..   +.|+....+..+.++.+++.++.+.+  ||........           .+.+   
T Consensus       205 ~i~~al~~lg~--------~r---igHgv~l~~d~~l~~~l~~~~i~le~--cP~SN~~l~~-----------~~~~---  257 (326)
T 3pao_A          205 YIWEALDLLKV--------ER---IDHGVRAFEDERLMRRLIDEQIPLTV--CPLSNTKLCV-----------FDDM---  257 (326)
T ss_dssp             HHHHHHHTTCC--------SS---EEECGGGGGCHHHHHHHHHHTCCEEE--CHHHHHHTTS-----------SSSG---
T ss_pred             HHHHHHhcCCC--------ce---eeeeeeecccHHHHHHHHHcCCeEEE--CchhHHHhCC-----------CCCc---
Confidence            23333332211        22   45655432335567777777776665  7765433211           0000   


Q ss_pred             hhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHH
Q 013050          291 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKL  369 (450)
Q Consensus       291 ~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~  369 (450)
                       ...++.++++.|++++++||....+..                     .+...+.. ....|+++++ ++..|.|++++
T Consensus       258 -~~hPi~~ll~~Gv~V~l~TDdp~~~~~---------------------~l~~e~~~a~~~~~l~~~~-l~~l~~nsi~~  314 (326)
T 3pao_A          258 -SQHTILDMLERGVKVTVNSDDPAYFGG---------------------YVTENFHALQQSLGMTEEQ-ARRLAQNSLDA  314 (326)
T ss_dssp             -GGCCHHHHHHHTCCEEECCBSHHHHTC---------------------CHHHHHHHHHHHHCCCHHH-HHHHHHHHHHT
T ss_pred             -ccChHHHHHHCCCeEEEeCCCcccCCC---------------------CHHHHHHHHHHHcCCCHHH-HHHHHHHHHHH
Confidence             112356778889999999995322110                     12233333 3446999999 57888998876


Q ss_pred             hCC
Q 013050          370 AGQ  372 (450)
Q Consensus       370 lg~  372 (450)
                      .-+
T Consensus       315 sf~  317 (326)
T 3pao_A          315 RLV  317 (326)
T ss_dssp             CC-
T ss_pred             HHh
Confidence            544

>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A

Probab=96.97  E-value=0.046  Score=49.25  Aligned_cols=231  Identities=10%  Similarity=0.039  Sum_probs=124.1

Q ss_pred             hHHHHHHHHhCCceEEEeCCCCCCCC--CCcHHHHHHHHHHHhcCCceEEEEeccccCCC-ccchHHHHHHHHcCCcEEE
Q 013050           61 FPSGTKAAAAGGITTLIDMPLNSDPS--TISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLNAGVLGLK  137 (450)
Q Consensus        61 ~~~~~~~~~~~GvT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~  137 (450)
                      .....+.+.+.||...+..+ ...+.  ....+.+....+....    ++....++.+.. ....++++++.+.|+.+++
T Consensus        49 ~e~~l~~md~~GV~~~V~~~-~~~~~~~~~~N~~~~~~~~~~p~----r~~~~~~v~p~~~~~a~~eL~~~~~~g~~Gi~  123 (291)
T 3irs_A           49 LELMFEEMAAAGIEQGVCVG-RNSSVLGSVSNADVAAVAKAYPD----KFHPVGSIEAATRKEAMAQMQEILDLGIRIVN  123 (291)
T ss_dssp             HHHHHHHHHHTTCCEEEEEC-CEETTTEECCHHHHHHHHHHSTT----TEEEEEECCCSSHHHHHHHHHHHHHTTCCCEE
T ss_pred             HHHHHHHHHHCCCCEEEEcC-CCccccccccHHHHHHHHHHCCC----cEEEEEecCccCHHHHHHHHHHHHhCCCeEEE
Confidence            45556678889999887764 21110  0222233333222211    122223333333 3445677776678999999


Q ss_pred             EecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHH
Q 013050          138 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT  217 (450)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  217 (450)
                      ....+.+.  ....+.+.+...++.|.++|++|.+|......             +..    ....|        ..+..
T Consensus       124 ~~~~~~~~--~~~~~d~~~~~~~~~a~e~glpv~iH~~~~~~-------------~~~----~~~~p--------~~~~~  176 (291)
T 3irs_A          124 LEPGVWAT--PMHVDDRRLYPLYAFCEDNGIPVIMMTGGNAG-------------PDI----TYTNP--------EHIDR  176 (291)
T ss_dssp             ECGGGSSS--CCCTTCGGGHHHHHHHHHTTCCEEEECSSSCS-------------SSG----GGGCH--------HHHHH
T ss_pred             EeCCCCCC--CCCCCCHHHHHHHHHHHHcCCeEEEeCCCCCC-------------CCC----ccCCH--------HHHHH
Confidence            87433210  11345678899999999999999999965310             000    00011        23445


Q ss_pred             HHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHH
Q 013050          218 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLW  297 (450)
Q Consensus       218 l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  297 (450)
                      ++++      +++.++.+.|+... ...+.++.+.+. ..+++.++....               ..+   .   ...+.
T Consensus       177 v~~~------~P~l~ivl~H~G~~-~~~~~~~l~~~~-~nvy~~~Sg~~~---------------~~~---~---~~~~~  227 (291)
T 3irs_A          177 VLGD------FPDLTVVSSHGNWP-WVQEIIHVAFRR-PNLYLSPDMYLY---------------NLP---G---HADFI  227 (291)
T ss_dssp             HHHH------CTTCCEEEEGGGTT-CHHHHHHHHHHC-TTEEEECGGGGS---------------SST---T---HHHHH
T ss_pred             HHHH------CCCCEEEeecCCcc-cHHHHHHHHhHC-CCeEecHHHHhc---------------cCC---C---HHHHH
Confidence            5554      45888888998764 333344433222 235655433210               001   0   11222


Q ss_pred             HHHhc-CC-eeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CC
Q 013050          298 EALMD-GH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VS  374 (450)
Q Consensus       298 ~~~~~-g~-~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~-~~  374 (450)
                      +.++. |. .+++|||+ |....                       ......+.+.++|.++.-+..+.|+++++++ .+
T Consensus       228 ~~~~~~g~drllfgSD~-P~~~~-----------------------~~~~~~~~~l~l~~e~~~~i~~~NA~rl~~~~~~  283 (291)
T 3irs_A          228 QAANSFLADRMLFGTAY-PMCPL-----------------------KEYTEWFLTLPIKPDAMEKILHGNAERLLAQAGR  283 (291)
T ss_dssp             HHHTTGGGGTBCCCCCB-TSSCH-----------------------HHHHHHHHTSSCCHHHHHHHHTHHHHHHHHHSCC
T ss_pred             HHHHHhCcceEEEecCC-CCCCH-----------------------HHHHHHHHHCCCCHHHHHHHHHHHHHHHhCcccc
Confidence            33321 21 35689994 44211                       1123344556899999999999999999998 44


Q ss_pred             CC
Q 013050          375 KG  376 (450)
Q Consensus       375 ~G  376 (450)
                      -|
T Consensus       284 ~~  285 (291)
T 3irs_A          284 EG  285 (291)
T ss_dssp             --
T ss_pred             cc
Confidence            34

>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus}

Probab=96.73  E-value=0.023  Score=51.76  Aligned_cols=52  Identities=15%  Similarity=0.296  Sum_probs=39.5

Q ss_pred             chHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 013050          121 NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM  176 (450)
Q Consensus       121 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~  176 (450)
                      ..++++++++ .|..|++.+....+    ...+.+.+..+++.+.++|++|.+|...
T Consensus       112 a~~el~r~~~~~G~~Gv~l~~~~~~----~~l~d~~~~p~~~~~~e~g~pv~iH~g~  164 (312)
T 3ij6_A          112 ACKVISSIKDDENLVGAQIFTRHLG----KSIADKEFRPVLAQAAKLHVPLWMHPVF  164 (312)
T ss_dssp             HHHHHHHHHHCTTEEEEEEESEETT----EETTSTTTHHHHHHHHHTTCCEEEECCC
T ss_pred             HHHHHHHHHHhCCCceEeccCCCCC----CCCCCccHHHHHHHHHHcCCeEEEcCCC
Confidence            4677888865 79999988654322    2345677889999999999999999943

>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}

Probab=95.88  E-value=0.054  Score=50.54  Aligned_cols=161  Identities=13%  Similarity=0.036  Sum_probs=89.9

Q ss_pred             cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHH
Q 013050          131 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA  210 (450)
Q Consensus       131 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  210 (450)
                      .++.|+.......      ..+++.+.+.++.|++.|+++.+|+.+...                        |    .+
T Consensus       180 ~~VvG~dL~g~E~------~~p~~~f~~~f~~ar~~Gl~~t~HAGE~~~------------------------p----~~  225 (380)
T 4gxw_A          180 DEVAGIGIDYREN------DRPPELFWKAYRDARAAGFRTTAHAGEFGM------------------------P----WR  225 (380)
T ss_dssp             TTBCEEEEESCCT------TCCGGGGHHHHHHHHHTTCEEEEEESCTTC------------------------C----HH
T ss_pred             CCEEEEeecCCCC------CCCHHHHHHHHHHHHHcCCCeeeeccccCC------------------------c----hH
Confidence            4677776632111      234567889999999999999999954321                        1    12


Q ss_pred             HHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCCh
Q 013050          211 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA  290 (450)
Q Consensus       211 ~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (450)
                      .+..+++++.         -  -.+.|.....+..+.++.+++.++++.+  ||.......           ..+. ...
T Consensus       226 ~i~~al~~lg---------a--~RIgHG~~~~~d~~L~~~l~~~~I~lEv--CP~SN~~l~-----------~v~~-~~~  280 (380)
T 4gxw_A          226 NVETAVDLLH---------V--DRVDHGYTIVDNPELCARYAERGIVFTV--VPTNSYYLR-----------TLPP-DQW  280 (380)
T ss_dssp             HHHHHHHTSC---------C--SEEEECGGGGGCHHHHHHHHHHTCEEEE--CTTCHHHHH-----------HSCT-TTH
T ss_pred             HHHHHHHHcC---------C--cccccceeeccChHHHHHHHHhCceeEE--CCcchhhhc-----------cccc-ccc
Confidence            2444444322         1  2344554332556677777777765554  775432211           1110 000


Q ss_pred             hhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHH
Q 013050          291 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKL  369 (450)
Q Consensus       291 ~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~  369 (450)
                      ....++...++.|++++++||.....                +.     .+...+.. ....|++.+++.+ .+.|+.++
T Consensus       281 ~~~HP~~~l~~~Gv~vtinTDDp~~f----------------~t-----~Ls~Ey~~~~~~~gls~~dl~~-l~~nsi~~  338 (380)
T 4gxw_A          281 AERHPMRKMPGLGLKIHPNTDDPTLH----------------KV-----NPSEAWELMFSHFGFTIADLKQ-FMLNGIDG  338 (380)
T ss_dssp             HHHCGGGGTGGGTCEEEECCBSHHHH----------------TC-----CHHHHHHHHHHTSCCCHHHHHH-HHHHHHHH
T ss_pred             cccChHHHHHHCCCeEEECCCCchhh----------------CC-----CHHHHHHHHHHHhCcCHHHHHH-HHHHHHHH
Confidence            11123456688999999999953110                11     13333333 3567999999664 45777665


Q ss_pred             hCC
Q 013050          370 AGQ  372 (450)
Q Consensus       370 lg~  372 (450)
                      .-+
T Consensus       339 sF~  341 (380)
T 4gxw_A          339 AWV  341 (380)
T ss_dssp             SSS
T ss_pred             HcC
Confidence            544

>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A

Probab=95.73  E-value=0.086  Score=48.47  Aligned_cols=110  Identities=12%  Similarity=0.035  Sum_probs=64.1

Q ss_pred             HHHHHHHHhCCceEEEeCCCCCC--CCCCcHH-------HHHHHHHHHhcCCceEEEEeccccCCCc-cchHHHHHHHHc
Q 013050           62 PSGTKAAAAGGITTLIDMPLNSD--PSTISTE-------TLKLKVDAAEKRIYVDVGFWGGLVPENA-YNASALEALLNA  131 (450)
Q Consensus        62 ~~~~~~~~~~GvT~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  131 (450)
                      ....+.+.+.||...+-.+ ...  .......       ............-+-++...+.+..... ...++++++.+.
T Consensus        61 ~~~l~~m~~~GV~~~V~~~-~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~p~r~~~~~~l~~~~~~~a~~el~~~~~~  139 (334)
T 2hbv_A           61 AFRIEEMDAQGVDVQVTCA-TPVMFGYTWEANKAAQWAERMNDFALEFAAHNPQRIKVLAQVPLQDLDLACKEASRAVAA  139 (334)
T ss_dssp             HHHHHHHHHHTCSEEEEEE-CGGGCCTTSCHHHHHHHHHHHHHHHHHHHTTCTTTEEECBCCCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEECC-CchhccCCCCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEecCccCHHHHHHHHHHHHHc
Confidence            4556677888998876654 210  0011111       1111112222222223333444444332 356777777778


Q ss_pred             CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 013050          132 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM  176 (450)
Q Consensus       132 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~  176 (450)
                      |+.+++......+    ...+.+.+...++.+.++|++|.+|...
T Consensus       140 g~~Gv~l~~~~~~----~~l~d~~~~p~~~~~~e~~lpv~iH~~~  180 (334)
T 2hbv_A          140 GHLGIQIGNHLGD----KDLDDATLEAFLTHCANEDIPILVHPWD  180 (334)
T ss_dssp             TCCCEEEESCBTT----BCTTSHHHHHHHHHHHHTTCCEEEECCS
T ss_pred             CCeEEEECCCCCC----CCCCcHHHHHHHHHHHHCCCEEEECCCC
Confidence            9999887654322    2356788999999999999999999964

>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}

Probab=95.35  E-value=0.066  Score=49.28  Aligned_cols=109  Identities=14%  Similarity=-0.028  Sum_probs=62.2

Q ss_pred             HHHHHHHHhCCceEEEeCCCCCCC--CCCcHH-------H-HHHHHHHHhcCCceEEEEeccccCCCc-cchHHHHHHHH
Q 013050           62 PSGTKAAAAGGITTLIDMPLNSDP--STISTE-------T-LKLKVDAAEKRIYVDVGFWGGLVPENA-YNASALEALLN  130 (450)
Q Consensus        62 ~~~~~~~~~~GvT~~~~~~~~~~~--~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  130 (450)
                      ....+.+.+.||...+..+ ....  ......       . -....+..... +-++...+.+..... ...++++++.+
T Consensus        57 ~~~l~~m~~~GV~~~v~~~-~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~-p~r~~~~~~l~~~~~~~a~~el~~~~~  134 (336)
T 2wm1_A           57 EVRIREMDQKGVTVQALST-VPVMFSYWAKPEDTLNLCQLLNNDLASTVVSY-PRRFVGLGTLPMQAPELAVKEMERCVK  134 (336)
T ss_dssp             HHHHHHHHHHTCCEEEEEC-CGGGGCTTSCHHHHHHHHHHHHHHHHHHHHHS-TTTEEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEECC-CchhhcccCCHHHHHHHHHHHHHHHHHHHHhc-cCceeEEEeCCCcCHHHHHHHHHHHHH
Confidence            4556677889999877654 2100  001111       1 11112222221 212333333433332 34677888774


Q ss_pred             -cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 013050          131 -AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM  176 (450)
Q Consensus       131 -~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~  176 (450)
                       .|+.+++......+    ...+.+.+...++.+.++|++|.+|...
T Consensus       135 ~~g~~Gv~l~~~~~~----~~l~d~~~~~~~~~~~e~~lpv~iH~~~  177 (336)
T 2wm1_A          135 ELGFPGVQIGTHVNE----WDLNAQELFPVYAAAERLKCSLFVHPWD  177 (336)
T ss_dssp             TSCCSEEEEESEETT----EETTCGGGHHHHHHHHHHTCEEEEECCS
T ss_pred             ccCCeEEEECCcCCC----CCCCCccHHHHHHHHHHcCCEEEECCCC
Confidence             69999987543322    1356678899999999999999999964

>4inf_A Metal-dependent hydrolase; amidohydrolase, metal binding site, enzyme functi initiative, EFI; 1.48A {Novosphingobium aromaticivorans} PDB: 4ing_A*

Probab=95.13  E-value=1.2  Score=41.34  Aligned_cols=66  Identities=15%  Similarity=0.265  Sum_probs=45.9

Q ss_pred             EEEeccccCCCc-cchHHHHHHHHc-CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCh
Q 013050          108 VGFWGGLVPENA-YNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME  177 (450)
Q Consensus       108 ~~~~~~~~~~~~-~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~  177 (450)
                      +...+.+..... ...++++++.+. |+.+++.+....+    ...+.+.+..+++.+.++|++|.+|....
T Consensus       147 f~g~a~v~~~~~~~a~~EL~r~~~~~G~~Gv~l~~~~~g----~~l~d~~~~pi~~~~~e~g~pV~iH~g~~  214 (373)
T 4inf_A          147 FIGMGTVAPQDPEWSAREIHRGARELGFKGIQINSHTQG----RYLDEEFFDPIFRALVEVDQPLYIHPATS  214 (373)
T ss_dssp             EEECBCCCTTSHHHHHHHHHHHHHTSCCCCEEECSCBTT----BCTTSGGGHHHHHHHHHHTCCEEECCCCC
T ss_pred             EEEEEecCCCCHHHHHHHHHHHHhhcCceEEEECCCCCC----CCCCCcchHHHHHHHHHcCCeEEECCCCC
Confidence            444444444333 246778888875 9999997643322    23566788999999999999999999653

>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1

Probab=94.40  E-value=0.087  Score=52.86  Aligned_cols=99  Identities=13%  Similarity=0.001  Sum_probs=56.9

Q ss_pred             EecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC
Q 013050          236 VHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT  315 (450)
Q Consensus       236 ~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~  315 (450)
                      .|+....+....++.+++.++.+.+  ||......             ...+    ....+..+++.|+.++++||....
T Consensus       542 gHGv~l~edp~Li~lla~~~I~vev--CP~SN~kl-------------~~~~----~~HPi~~ll~~Gv~VsLgTDdp~~  602 (701)
T 2a3l_A          542 AHGINLRKSPVLQYLYYLAQIGLAM--SPLSNNSL-------------FLDY----HRNPFPVFFLRGLNVSLSTDDPLQ  602 (701)
T ss_dssp             SCCGGGGGCHHHHHHHHHHTCCEEE--CHHHHTTT-------------TCCS----TTCSHHHHHHTTCCEEECCBCHHH
T ss_pred             EEEeecccCHHHHHHHHHcCCcEEE--Cccchhhh-------------ccCc----hHhHHHHHHHCCCcEEEeCCCccc
Confidence            3443322444456667777776665  77654311             0001    111355678899999999996433


Q ss_pred             ChhhhcccCCCccccCCCCcchhhHHHHHHH-HHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          316 VPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       316 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      +...+                  ..+...+. .....+++..++.++ |.|++++.++
T Consensus       603 ~~~t~------------------~dL~~Ey~~aa~~~~ls~~dl~~l-a~Ns~~asfl  641 (701)
T 2a3l_A          603 IHLTK------------------EPLVEEYSIAASVWKLSACDLCEI-ARNSVYQSGF  641 (701)
T ss_dssp             HCCSS------------------SHHHHHHHHHHHHHTCCHHHHHHH-HHHHHHHSCC
T ss_pred             cCCCC------------------cCHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHhCC
Confidence            11100                  01222222 234458999997777 9999999997

>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*

Probab=93.80  E-value=0.29  Score=47.26  Aligned_cols=124  Identities=19%  Similarity=0.123  Sum_probs=69.7

Q ss_pred             cCCcEEEEecccCCCCCCCCCCHHHHHHHHHH--HHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHH
Q 013050          131 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSV--LARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWE  208 (450)
Q Consensus       131 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  208 (450)
                      .++.|+.......     ...+.+.+...++.  |++.|+++.+|+.+...           .+.        ..+    
T Consensus       291 ~~VvG~DLaG~E~-----~g~p~~~f~~~f~~~~A~~~gl~~t~HAGE~~~-----------~g~--------~~~----  342 (508)
T 3lgd_A          291 TVVAGFDLVGHED-----TGHSLHDYKEALMIPAKDGVKLPYFFHAGETDW-----------QGT--------SID----  342 (508)
T ss_dssp             TTEEEEEEESCTT-----TSCCTGGGHHHHTHHHHTTCCCCBCCEECCSSC-----------CSS--------TTT----
T ss_pred             CceEEeccCCCCC-----CCCCHHHHHHHHHHHHHHHcCCceeeecccccC-----------CCC--------CcH----
Confidence            4577776632111     11235667777887  88999999999955321           000        001    


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCC
Q 013050          209 EAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIR  288 (450)
Q Consensus       209 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (450)
                       +.+..++.+..         .   .+.|+....+..+.++.+++.++.+.+  ||........-           +.  
T Consensus       343 -~~i~~Al~Lga---------~---RIgHGv~l~~dp~l~~~l~~~~I~lev--CP~SN~~l~~v-----------~~--  394 (508)
T 3lgd_A          343 -RNILDALMLNT---------T---RIGHGFALSKHPAVRTYSWKKDIPIEV--CPISNQVLKLV-----------SD--  394 (508)
T ss_dssp             -THHHHHHHTTC---------S---SEEECTTGGGCHHHHHHHHHTTCCEEE--CHHHHHHTTSC-----------SS--
T ss_pred             -HHHHHHHhcCC---------c---eeeeeEecCccHHHHHHHHhcCCeEEE--CcchHHHhCCC-----------CC--
Confidence             12333442211         2   245665542446778888888877666  77654432110           00  


Q ss_pred             ChhhHHHHHHHHhcCCeeEEcCCC
Q 013050          289 DAANKEKLWEALMDGHIDMLSSDH  312 (450)
Q Consensus       289 ~~~~~~~l~~~~~~g~~~~~gtD~  312 (450)
                        ....++..+++.|++++++||.
T Consensus       395 --~~~hP~~~ll~~Gv~V~l~TDd  416 (508)
T 3lgd_A          395 --LRNHPVATLMATGHPMVISSDD  416 (508)
T ss_dssp             --GGGCTHHHHHHTTCCEEECCBS
T ss_pred             --cccChHHHHHHCCCcEEEcCCC
Confidence              1112356778899999999995

>3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus}

Probab=92.51  E-value=0.76  Score=42.49  Aligned_cols=66  Identities=11%  Similarity=0.074  Sum_probs=45.3

Q ss_pred             EEEeccccCCCc-cchHHHHHHH-HcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCCh
Q 013050          108 VGFWGGLVPENA-YNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME  177 (450)
Q Consensus       108 ~~~~~~~~~~~~-~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~  177 (450)
                      +...+.+..... ...+++++++ +.|+.+++....+.+    ...+.+.+..+++.+.++|++|.+|....
T Consensus       129 f~g~a~v~~~~~~~a~~El~r~~~~~G~~Gv~l~~~~~~----~~~~d~~~~p~~~~~~e~g~pV~iH~g~~  196 (357)
T 3nur_A          129 FVGFATLPINEPEAAAREFERCINDLGFKGALIMGRAQD----GFLDQDKYDIIFKTAENLDVPIYLHPAPV  196 (357)
T ss_dssp             EEECBCCCTTSHHHHHHHHHHHHHTTCCCCEEEESCBTT----BCTTSGGGHHHHHHHHHHTCCEEEECCCC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhhcCceEEEeCCCCCC----CCCCCccHHHHHHHHHhcCCeEEEecCCC
Confidence            344443433332 3567788865 589999998743321    13566788899999999999999999653

>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A

Probab=91.30  E-value=7  Score=34.13  Aligned_cols=38  Identities=32%  Similarity=0.476  Sum_probs=26.6

Q ss_pred             ceeeccccCCC---CCCcccchHHHHHHHHhCCceEEEeCC
Q 013050           43 LIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMP   80 (450)
Q Consensus        43 ~iD~H~H~~~~---~~~~~~~~~~~~~~~~~~GvT~~~~~~   80 (450)
                      +||.|+|....   +....+......+.+.+.|++.+.-.+
T Consensus         1 m~D~H~H~~~~~ddG~~~~~~sl~~~~~a~~~G~~~i~~T~   41 (262)
T 3qy7_A            1 MIDIHCHILPAMDDGAGDSADSIEMARAAVRQGIRTIIATP   41 (262)
T ss_dssp             CEESSBCCSTTSSSSCSSHHHHHHHHHHHHHTTCCEEECCC
T ss_pred             CEEEeecCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Confidence            68999999643   222222233478889999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	450
d1nfga2	330	c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pi	4e-60
d2ftwa2	334	c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolas	2e-58
d1gkpa2	335	c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [Ta	4e-57
d2fvka2	384	c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolas	6e-57
d1kcxa2	334	c.1.9.6 (A:67-400) Dihydropyrimidinase related pro	6e-57
d1ynya2	332	c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR	2e-53
d1xrta2	310	c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aqui	6e-51
d1gkra2	325	c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter au	3e-46
d2eg6a1	343	c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli	9e-25
d2vhla2	301	c.1.9.10 (A:58-358) N-acetylglucosamine-6-phosphat	3e-21
d1i0da_	331	c.1.9.3 (A:) Phosphotriesterase (parathion hydrola	3e-20
d1onwa2	284	c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catal	2e-19
d1xrta1	112	b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorot	3e-09
d1kcxa1	142	b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase r	8e-07
d1ejxc1	181	b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit o	3e-06
d1nfga1	127	b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkho	5e-06
d1gkra1	126	b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthro	6e-06
d1p1ma1	123	b.92.1.4 (A:1-49,A:331-404) Hypothetical protein T	1e-05
d1onwa1	105	b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidas	1e-05
d1o12a2	288	c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphat	2e-05
d2icsa2	267	c.1.9.14 (A:55-321) Putative adenine deaminase EF0	4e-05
d1gkpa1	123	b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermu	6e-05
d2ftwa1	150	b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amid	8e-05
d1k1da1	128	b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacill	2e-04
d1m7ja2	61	b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydro	4e-04
d1ynya1	127	b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacill	4e-04
d4ubpc2	390	c.1.9.2 (C:132-434,C:484-570) alpha-subunit of ure	0.002
d2p9ba1	118	b.92.1.10 (A:9-70,A:395-450) Uncharacterized prote	0.002
d1yrra1	85	b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-	0.004

>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 330

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Burkholderia pickettii [TaxId: 329]

 Score =  197 bits (501), Expect = 4e-60
 Identities = 80/336 (23%), Positives = 134/336 (39%), Gaps = 19/336 (5%)

Query: 42  GLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 99
           G IDVH H++         + F + T AAA GG TT++D     D      E +      
Sbjct: 1   GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFC-QQDRGHSLAEAVAKWDGM 59

Query: 100 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 159
           A  +  +D G+   ++         LE L + G+   K FM         M +   + + 
Sbjct: 60  AGGKSAIDYGYHIIVLDPTDSVIEELEVLPDLGITSFKVFM---AYRGMNMIDDVTLLKT 116

Query: 160 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 219
           L    +    ++VHAE    +  +++ +       +   +  +RPP  E  A    L +A
Sbjct: 117 LDKAVKTGSLVMVHAENGDAA-DYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALA 175

Query: 220 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF---SAEEIPD 276
           +          A ++IVH++   S  + +M AK+ G     ETC HYL       E    
Sbjct: 176 EIV-------NAPIYIVHVTCEESL-EEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF 227

Query: 277 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGIS 335
              ++   PP R   + + LW AL +G  + +SSDH        K     +F     G  
Sbjct: 228 EGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAP 287

Query: 336 SLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 371
            ++  L + +    +  ++L Q     + RPAK+ G
Sbjct: 288 GVEERLMMVYQGVNEGRISLTQFVELVATRPAKVFG 323

>d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 334

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Dictyostelium discoideum [TaxId: 44689]

 Score =  192 bits (489), Expect = 2e-58
 Identities = 63/339 (18%), Positives = 114/339 (33%), Gaps = 20/339 (5%)

Query: 41  PGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 98
           PG ID H H   P  G    + F  GT+AA AGG T +ID            E       
Sbjct: 1   PGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFV-IPTRGQSLLEAYDQWKK 59

Query: 99  AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 158
            A++++  D      +   +   +  +E L+     G+ SF C     +  M     +  
Sbjct: 60  WADEKVNCDYSLHVAITWWSEQVSREMEILVKER--GVNSFKCFMAYKNSFMVTDQEMYH 117

Query: 159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 218
                        VHAE         + +   +       +  +RP + E  A    + +
Sbjct: 118 IFKRCKELGAIAQVHAENGDMV-FEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVI 176

Query: 219 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 278
           A                +    +  + D++ + +  G  +  E     L      + + D
Sbjct: 177 ADSVC--------TPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHD 228

Query: 279 TRF-----KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGG 333
            R         P   D   K  L + L  G +D + +D+     + K + + +F K   G
Sbjct: 229 WRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNG 288

Query: 334 ISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 371
           ++ ++  + + W  G   G +T  Q     S   A++  
Sbjct: 289 VNGVEDRMSIVWENGVNTGKLTWCQFVRATSSERARIFN 327

>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 335

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Thermus sp. [TaxId: 275]

 Score =  189 bits (481), Expect = 4e-57
 Identities = 86/347 (24%), Positives = 141/347 (40%), Gaps = 20/347 (5%)

Query: 43  LIDVHAHLDDPGRTEW--EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 100
            ID H H+  P    +  +   +G+KAA  GG TT I+M      +  + E  +L    A
Sbjct: 1   FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMC-CPSRNDDALEGYQLWKSKA 59

Query: 101 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 160
           E   Y D  F   +   +      L  ++  G+   K F+       F   +   + + L
Sbjct: 60  EGNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFKIFLSYKN---FFGVDDGEMYQTL 116

Query: 161 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 220
            +       +  H E  +   R  +       T     +  +RP + E        T  +
Sbjct: 117 RLAKELGVIVTAHCENAELVGRLQQKLLSEGKT-GPEWHEPSRPEAVEAEGTARFATFLE 175

Query: 221 DTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD-- 278
            T       GA  ++VHLS   +  D  M AK  G  I +E+   +          G   
Sbjct: 176 TT-------GATGYVVHLSCKPAL-DAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVE 227

Query: 279 -TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 337
             ++  +PP+RD  N++ LW+AL  G ID + +DH P   E KLL +  F     GI ++
Sbjct: 228 AMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAI 287

Query: 338 QFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGN 382
           +  + + ++YG   G + + +     S + AKL G    KG IA+G+
Sbjct: 288 EDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGS 334

>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 384

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

 Score =  190 bits (483), Expect = 6e-57
 Identities = 76/393 (19%), Positives = 138/393 (35%), Gaps = 66/393 (16%)

Query: 42  GLIDVHAHLDDPGR---TEWEGFPSGTKAAAAGGITTLIDMPLNS---DPSTISTETLKL 95
           G ID H H+D+P +      +     T++A AGG TT++            +   E++KL
Sbjct: 1   GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKL 60

Query: 96  KVD-AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG----INDFPM 150
            VD  +E+ +Y D G    L      +  A E L          +   S           
Sbjct: 61  DVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGLQ 120

Query: 151 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 210
            +   I   +    +     ++HAE     +  ++  ++   T     +  +RP   E  
Sbjct: 121 ISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLT-DAYYHGVSRPSIVEGE 179

Query: 211 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 270
           A    +T+A             +  VH+S   ++ +++ +A+T G  +  ETCP Y   S
Sbjct: 180 ATNRAITLATTM-------DTPILFVHVSSPQAA-EVIKQAQTKGLKVYAETCPQYALLS 231

Query: 271 AEEIPDGD------------------------------TRFKCAPPIRDAANKEKLWEAL 300
                                                 +++ C+PPIR    ++ +W+ +
Sbjct: 232 DAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGM 291

Query: 301 MDGHIDMLSSDHSPTVPELKLL-------------DEGNFLKAWGGISSLQFVLPVTWSY 347
            +G   ++ SDH       K                 G F     G+  +   +P+ + Y
Sbjct: 292 NNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDY 351

Query: 348 GRKYG--VTLEQLASWWSERPAKLAG-QVSKGA 377
           G   G   ++ +L       PAK+ G    KG+
Sbjct: 352 GYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS 384

>d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 334

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidinase related protein-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  189 bits (480), Expect = 6e-57
 Identities = 70/339 (20%), Positives = 117/339 (34%), Gaps = 20/339 (5%)

Query: 41  PGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 98
           PG IDV+ +L  P  G T  + F  GTKAA AGG T +ID     +P +    + +   +
Sbjct: 1   PGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHV-VPEPGSSLLTSFEKWHE 59

Query: 99  AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 158
           AA+ +   D      +          LE L+     G+ SF       D    + S + E
Sbjct: 60  AADTKSCCDYSLHVDITSWYDGVREELEVLVQDK--GVNSFQVYMAYKDLYQMSDSQLYE 117

Query: 159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 218
             + L      +LVHA          +     +       +  +RP   E  A+   + +
Sbjct: 118 AFTFLKGLGAVILVHA-ENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAIAI 176

Query: 219 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE----- 273
           A             ++I  +   S++ D++  A+  G  +  E     L           
Sbjct: 177 AGRI-------NCPVYITKVMSKSAA-DIIALARKKGPLVFGEPIAASLGTDGTHYWSKN 228

Query: 274 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGG 333
                      P   D    + L   L  G + +  S H P     K + + NF     G
Sbjct: 229 WAKAAAFVTSPPLSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEG 288

Query: 334 ISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 371
           ++ ++  + V W      G +   Q  +  S   AK+  
Sbjct: 289 VNGIEERMTVVWDKAVATGKMDENQFVAVTSTNAAKIFN 327

>d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 332

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Bacillus sp. AR9 [TaxId: 301298]

 Score =  179 bits (455), Expect = 2e-53
 Identities = 90/338 (26%), Positives = 147/338 (43%), Gaps = 21/338 (6%)

Query: 42  GLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 99
           G ID H HLD P  G    + F +GT+AAA GG T+++D    +         +    + 
Sbjct: 1   GGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFC-LTKKGESLKSAIATWHEK 59

Query: 100 AEKRIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKE 158
           A  +  +D GF   +   N      LE+++++ G+  LK FM    +      +   + +
Sbjct: 60  ARGKAVIDYGFHLMIAEANDQVLEELESVISSEGITSLKVFMAYKNV---FQADDETLFK 116

Query: 159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 218
            L         + VHAE       ++  +           +  TRPP  E  A    + +
Sbjct: 117 TLVKAKELGALVQVHAENGDVL-DYLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAIAL 175

Query: 219 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 278
                       + L++VH+S AS+    + EA+  G ++  ETCP YLA     +   D
Sbjct: 176 TALAG-------SQLYVVHVSCASAV-QRIAEAREKGWNVYGETCPQYLALDVSIMDQPD 227

Query: 279 ---TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGI 334
               ++  +PP+R+  N+E LW AL +G +  + SDH P      K L  G+F K   G 
Sbjct: 228 FEGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGG 287

Query: 335 SSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 371
             ++  L + +S G + G ++L Q     S + AKL G
Sbjct: 288 PLIEDRLTILYSEGVRQGRISLNQFVDISSTKAAKLFG 325

>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} Length = 310

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Two-domain dihydroorotase
species: Aquifex aeolicus [TaxId: 63363]

 Score =  172 bits (437), Expect = 6e-51
 Identities = 81/330 (24%), Positives = 143/330 (43%), Gaps = 24/330 (7%)

Query: 42  GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 101
           G ID+H HL DPG+T  E   SG++ A AGG TT++ MP N++P   +T  +   +  ++
Sbjct: 1   GFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQKSK 59

Query: 102 KRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 161
                 V   G +          +    +    G  +F      +  P+ ++S +++ L 
Sbjct: 60  SVGLCRVLPTGTITKGR--KGKEIADFYSLKEAGCVAFTD----DGSPVMDSSVMRKALE 113

Query: 162 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 221
           + ++   P++ H E +K +   +   + +         L +R P  EE  I     +A+ 
Sbjct: 114 LASQLGVPIMDHCEDDKLAYGVINEGEVS-----ALLGLSSRAPEAEEIQIARDGILAQR 168

Query: 222 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF 281
           T             +       SL+++   K  G  IT E  P++L F+  E+ +     
Sbjct: 169 TG--------GHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGANA 220

Query: 282 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL 341
           +  PP+R   ++  L E +  G ID  ++DH+P     K L       A  GI  LQ  L
Sbjct: 221 RVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKEL----VEFAMPGIIGLQTAL 276

Query: 342 PVTWSYGRKYGVTLEQLASWWSERPAKLAG 371
           P      RK  ++L++L   ++  PA++ G
Sbjct: 277 PSALELYRKGIISLKKLIEMFTINPARIIG 306

>d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 325

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: L-hydantoinase
species: Arthrobacter aurescens [TaxId: 43663]

 Score =  161 bits (406), Expect = 3e-46
 Identities = 93/335 (27%), Positives = 146/335 (43%), Gaps = 21/335 (6%)

Query: 42  GLIDVHAHLDDPGRTEWEG-FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 100
           G++D H H+ D       G F   +++AA GGITT+I+MP  + P T + +    K   A
Sbjct: 1   GVVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMP-ITFPPTTTLDAFLEKKKQA 59

Query: 101 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 160
            +R+ VD   +GG VP    N   +  + +AG +G KS M  S    F   +   + E  
Sbjct: 60  GQRLKVDFALYGGGVP---GNLPEIRKMHDAGAVGFKSMMAASVPGMFDAVSDGELFEIF 116

Query: 161 SVLARYKRPLLVHA---EMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 217
             +A     ++VHA    + +  ++ +K           + Y  ++P   E         
Sbjct: 117 QEIAACGSVIVVHAENETIIQALQKQIKAAGGK----DMAAYEASQPVFQE--------N 164

Query: 218 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 277
            A         E     IV        ++L+ +A++ G  +  E+ P YL  + ++    
Sbjct: 165 EAIQRALLLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERI 224

Query: 278 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 337
               K APP+R A    +LWE L +G ID L SDH     E K     +  KA  G   L
Sbjct: 225 GPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGL 284

Query: 338 QFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 371
           +  LP+  + G   G ++LE+L     E+PAKL G
Sbjct: 285 ETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKLFG 319

>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} Length = 343

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Dihydroorotase
domain: Dihydroorotase
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (254), Expect = 9e-25
 Identities = 32/329 (9%), Positives = 73/329 (22%), Gaps = 40/329 (12%)

Query: 45  DVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI 104
           D H HL D                 +      I MP N  P   + E            +
Sbjct: 11  DWHLHLRD------GDMLKTVVPYTSEIYGRAIVMP-NLAPPVTTVEAAVAYRQRILDAV 63

Query: 105 YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 164
                F   +      ++     L      G+ +       N    ++            
Sbjct: 64  PAGHDFTPLMTCYL-TDSLDPNELERGFNEGVFTAAKLYPANATTNSSHGVT-------- 114

Query: 165 RYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 224
                  +   +E             +        +                   + T  
Sbjct: 115 ---SVDAIMPVLE---RMEKIGMPLLVHGEVTHADIDIFDREARFIESVMEPLRQRLT-- 166

Query: 225 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE--EIPDGDTRFK 282
                   +   H++   ++       +   + +     P +L F+     +        
Sbjct: 167 -----ALKVVFEHITTKDAA----DYVRDGNERLAATITPQHLMFNRNHMLVGGVRPHLY 217

Query: 283 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 342
           C P ++   +++ L E +  G   +     S      +          +   ++L     
Sbjct: 218 CLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAPTALGSYAT 277

Query: 343 VTWSYGRKYGVTLEQLASWWSERPAKLAG 371
           V           L+   ++ S    +  G
Sbjct: 278 VFEEMN-----ALQHFEAFCSVNGPQFYG 301

>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} Length = 331

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Phosphotriesterase-like
domain: Phosphotriesterase (parathion hydrolase, PTE)
species: Pseudomonas diminuta [TaxId: 293]

 Score = 89.4 bits (220), Expect = 3e-20
 Identities = 51/350 (14%), Positives = 95/350 (27%), Gaps = 48/350 (13%)

Query: 42  GLIDVHAHLDDPGRTEWEGFP--------------SGTKAAAAGGITTLIDMPLNSDPST 87
           G    H H+          +P               G + A A G+ T++D+  ++    
Sbjct: 16  GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDV--STFDIG 73

Query: 88  ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND 147
                L     AA+  I    G W            ++E L    +  ++  +  +GI  
Sbjct: 74  RDVSLLAEVSRAADVHIVAATGLWFDPPLS--MRLRSVEELTQFFLREIQYGIEDTGIRA 131

Query: 148 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 207
             +  A+  K         +  L   A     +   V                       
Sbjct: 132 GIIKVATTGKA----TPFQELVLKAAARASLATGVPVTT--------------------H 167

Query: 208 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 267
             A+ R+    A    ++G         +  SD +  L  L      G  I ++  PH  
Sbjct: 168 TAASQRDGEQQAAIFESEGL--SPSRVCIGHSDDTDDLSYLTALAARGYLIGLDHIPHSA 225

Query: 268 AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 327
               +           +   R    K  + +  M     ++S+D                
Sbjct: 226 IGLEDNASASALLGIRSWQTRALLIKALIDQGYMKQ--ILVSNDWLFGFSSYV--TNIMD 281

Query: 328 LKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGA 377
           +        + F+      + R+ GV  E LA      PA+      + +
Sbjct: 282 VMDRVNPDGMAFIPLRVIPFLREKGVPQETLAGITVTNPARFLSPTLRAS 331

>d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]} Length = 284

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Isoaspartyl dipeptidase, catalytic domain
domain: Isoaspartyl dipeptidase, catalytic domain
species: Escherichia coli [TaxId: 562]

 Score = 86.0 bits (211), Expect = 2e-19
 Identities = 37/338 (10%), Positives = 78/338 (23%), Gaps = 57/338 (16%)

Query: 42  GLIDVHAHLDDPGRTE---WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 98
           G ID H HL   G                    G+T+++ +   +D  +   E+L  K  
Sbjct: 1   GFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLL-GTDSISRHPESLLAKTR 59

Query: 99  AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 158
           A  +         G     +                          +             
Sbjct: 60  ALNEEGISAWMLTGAYHVPSRTITG----------------SVEKDVAIIDRVIGVKCAI 103

Query: 159 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 218
                A      L +   E      +  +          +            A++ +  +
Sbjct: 104 SDHRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSK----------KALQPIYDL 153

Query: 219 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 278
            ++           +  +  +                 +  V      L F+ +     D
Sbjct: 154 LENC-------DVPISKLLPT---------------HVNRNVPLFEQALEFARKGGTI-D 190

Query: 279 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 338
                  P+  A    +  +A +      LSSD + + P               G++  +
Sbjct: 191 ITSSIDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFD----DEGNLTHIGVAGFE 246

Query: 339 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKG 376
            +L       + Y  ++       +   A       KG
Sbjct: 247 TLLETVQVLVKDYDFSISDALRPLTSSVAGFLNLTGKG 284

>d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} Length = 112

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Two-domain dihydroorotase
species: Aquifex aeolicus [TaxId: 63363]

 Score = 52.3 bits (125), Expect = 3e-09
 Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 4/101 (3%)

Query: 335 SSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 394
            +L+    +    G+     +++             G +    + +G+ AD+ +++P  E
Sbjct: 16  QNLEGEFDILVENGKI--KKIDKNILVPEAEIIDAKGLIVCPTLKLGSPADITIFDPNKE 73

Query: 395 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435
           + L+ +     K    +   G+ L GKV+ TI  G +VYK+
Sbjct: 74  WILNEET-NLSKS-RNTPLWGKVLKGKVIYTIKDGKMVYKD 112

>d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 142

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Dihydropyrimidinase related protein-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.0 bits (109), Expect = 8e-07
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 375 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434
              IA+G+ AD+V+W+P+    +             + + G    G  L  IS+G +V++
Sbjct: 50  MVIIAVGSDADVVIWDPDKMKTITAKSH-KSTVEY-NIFEGMECHGSPLVVISQGKIVFE 107

Query: 435 EGN 437
           +GN
Sbjct: 108 DGN 110

>d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]} Length = 181

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: alpha-Subunit of urease
domain: alpha-Subunit of urease
species: Klebsiella aerogenes [TaxId: 28451]

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 9/93 (9%)

Query: 6   VEIKEGNIISIVSEEDWPRN-------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW 58
           + +K+G I +I    +               +V+     ++  G I+V    D       
Sbjct: 85  IGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGSIEVGKLADLV-VWSP 143

Query: 59  EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTE 91
             F         GG+  +  M  + + S  + +
Sbjct: 144 AFFGVKPATVIKGGMIAIAPMG-DINASIPTPQ 175

>d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 127

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Burkholderia pickettii [TaxId: 329]

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 376 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 435
             IA+G+ AD+V+W+PEAE  ++            S+Y G ++ G     + RG ++  E
Sbjct: 50  FPIAVGSDADIVLWDPEAEMVIEQTA--MHNAMDYSSYEGHKVKGVPKTVLLRGKVIVDE 107

Query: 436 GN 437
           G+
Sbjct: 108 GS 109

>d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 126

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: L-hydantoinase
species: Arthrobacter aurescens [TaxId: 43663]

 Score = 43.5 bits (102), Expect = 6e-06
 Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 356 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 415
              +   + R     G+     + +G+ ADL++ + + + ++D      +     S + G
Sbjct: 34  ADTSDVEASRTIDAGGKFVMPTLQVGSDADLLILDLDIDTKVDASQFRSLHK--YSPFDG 91

Query: 416 RRLSGKVLATISRGNLVYKEGN 437
             ++G  + T+ RG +V ++G 
Sbjct: 92  MPVTGAPVLTMVRGTVVAEKGE 113

>d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]} Length = 123

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Hypothetical protein TM0936
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 353 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISA 412
            T++++     +    L+G++    I  G +ADLVV + +        +  +        
Sbjct: 26  GTIKRVLQGEVKVDLDLSGKLVMPKIEEGWNADLVVIDLDLPEMFPVQNIKNH------- 78

Query: 413 YLGRRLSGKVLATISRGNLVYKEGNH 438
            L    SG+V AT+  G  +Y +G +
Sbjct: 79  -LVHAFSGEVFATMVAGKWIYFDGEY 103

>d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} Length = 105

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Isoaspartyl dipeptidase
domain: Isoaspartyl dipeptidase
species: Escherichia coli [TaxId: 562]

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 10/82 (12%)

Query: 3   KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD---DPGRTEWE 59
              V +  G II++ S            VVD    ++ P ++  +        P     +
Sbjct: 25  ICDVLVANGKIIAVASNIPSDIVPNC-TVVDLSGQILCPEILPGNDADLLVMTPELRIEQ 83

Query: 60  GFPSGT------KAAAAGGITT 75
            +  G       KA   G   T
Sbjct: 84  VYARGKLMVKDGKACVKGTFET 105

>d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 288

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 42  GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 101
           G +D H H      T    F    +   + G+TT +     S       E L+   D   
Sbjct: 1   GFVDPHIHGVVGADTMNCDFSEMEEFLYSQGVTTFLAT-TVSTSLEKMKEILRKARDYIL 59

Query: 102 K 102
           +
Sbjct: 60  E 60

>d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} Length = 267

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Adenine deaminase-like
domain: Putative adenine deaminase EF0837
species: Enterococcus faecalis [TaxId: 1351]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 9/75 (12%)

Query: 42  GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 101
           G ID H H  +     ++      +     G+TT+ID        T   E +    D A+
Sbjct: 1   GWIDDHVHCFEKMALYYDYPD---EIGVKKGVTTVIDAG------TTGAENIHEFYDLAQ 51

Query: 102 KRIYVDVGFWGGLVP 116
           +      G       
Sbjct: 52  QAKTNVFGLVNISKW 66

>d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 123

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Thermus sp. [TaxId: 275]

 Score = 40.3 bits (94), Expect = 6e-05
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 384 ADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 437
           ADLVV++P+    +         +   + + G  + G+      RG +  ++G 
Sbjct: 54  ADLVVYDPQYRGTISVKT--QHVNNDYNGFEGFEIDGRPSVVTVRGKVAVRDGQ 105

>d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 150

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 40.4 bits (94), Expect = 8e-05
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 374 SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 433
               I +G   D+V+W+P     +  D   H      + + G +++G  + TI  GN+V+
Sbjct: 50  KLLLIDVGCDGDIVIWDPNQSKTISKDT--HHHAVDFNIFEGIKVTGIAVTTIVAGNIVW 107

Query: 434 KEGN 437
            +  
Sbjct: 108 SDNK 111

>d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 128

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 375 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 434
              I +G+ ADLV+++P  E  +  +          +A+ G +++G+ ++ + RG  V +
Sbjct: 50  VFPIVVGSDADLVIFDPNIERVISAETHHMAVD--YNAFEGMKVTGEPVSVLCRGEFVVR 107

Query: 435 EGN 437
           +  
Sbjct: 108 DKQ 110

>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} Length = 61

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: D-aminoacylase
domain: N-acyl-D-aminoacid amidohydrolase
species: Alcaligenes faecalis [TaxId: 511]

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 12/70 (17%)

Query: 378 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 437
           +  G +ADLVV++P                 S +       +  + +    G  V+++ +
Sbjct: 2   VQPGYYADLVVFDPA------------TVADSATFEHPTERAAGIHSVYVNGAAVWEDQS 49

Query: 438 HAPAACGSPI 447
                 G  +
Sbjct: 50  FTGQHAGRVL 59

>d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 127

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Bacillus sp. AR9 [TaxId: 301298]

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 377 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 436
            IA+G+ AD+V+++P  +  L  +          + + G  + G+V++ +SRG+ V ++ 
Sbjct: 51  PIAVGSDADIVIFDPHVKRTLSVETHHMNVD--YNPFEGMEVYGEVVSVLSRGSFVVRDK 108

Query: 437 N 437
            
Sbjct: 109 Q 109

>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} Length = 390

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: alpha-subunit of urease, catalytic domain
domain: alpha-subunit of urease, catalytic domain
species: Bacillus pasteurii [TaxId: 1474]

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 32/143 (22%)

Query: 42  GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET--------L 93
           G ID H H  +P + +          A A GITTL        P+  S  T        +
Sbjct: 1   GGIDTHVHFINPDQVD---------VALANGITTLFGGGTG--PAEGSKATTVTPGPWNI 49

Query: 94  KLKVDAAEKRIYVDVGFWG-GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTN 152
           +  + + E  + ++VG  G G    +  + + +   ++AG  GLK       I++     
Sbjct: 50  EKMLKSTE-GLPINVGILGKG----HGSSIAPIMEQIDAGAAGLK-------IHEDWGAT 97

Query: 153 ASHIKEGLSVLARYKRPLLVHAE 175
            + I   L+V       + +H++
Sbjct: 98  PASIDRSLTVADEADVQVAIHSD 120

>d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} Length = 118

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Uncharacterized protein BL1453
species: Bifidobacterium longum [TaxId: 216816]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 6/46 (13%), Positives = 11/46 (23%), Gaps = 2/46 (4%)

Query: 30 QVVDYGEAVIMPGLIDVHAHLDDPGR--TEWEGFPSGTKAAAAGGI 73
            +D    ++M  +      L        +           AAG  
Sbjct: 52 HYLDGTGKIVMLEVGKSADLLVLNANPLDDLRALEHPALVIAAGHP 97

>d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} Length = 85

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: N-acetylglucosamine-6-phosphate deacetylase, NagA
domain: N-acetylglucosamine-6-phosphate deacetylase, NagA
species: Escherichia coli [TaxId: 562]

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 1  MCKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWE 59
          +   AV I +G I S+    + P      +      A++ P L             +++
Sbjct: 16 LDDHAVVIADGLIKSVCPVAELPPEI---EQRSLNGAILSPTLAAGKVANLTAFTPDFK 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	450
d1gkpa2	335	D-hydantoinase {Thermus sp. [TaxId: 275]}	100.0
d1kcxa2	334	Dihydropyrimidinase related protein-1 {Mouse (Mus	100.0
d1nfga2	330	D-hydantoinase {Burkholderia pickettii [TaxId: 329	100.0
d2ftwa2	334	Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli	100.0
d1ynya2	332	D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}	100.0
d1gkra2	325	L-hydantoinase {Arthrobacter aurescens [TaxId: 436	100.0
d2fvka2	384	Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc	100.0
d1xrta2	310	Two-domain dihydroorotase {Aquifex aeolicus [TaxId	100.0
d2eg6a1	343	Dihydroorotase {Escherichia coli [TaxId: 562]}	99.93
d1ra0a2	320	Cytosine deaminase catalytic domain {Escherichia c	99.7
d2uz9a2	313	Guanine deaminase {Human (Homo sapiens) [TaxId: 96	99.69
d4ubpc2	390	alpha-subunit of urease, catalytic domain {Bacillu	99.68
d1i0da_	331	Phosphotriesterase (parathion hydrolase, PTE) {Pse	99.68
d2i9ua2	310	Guanine deaminase {Clostridium acetobutylicum [Tax	99.64
d1p1ma2	281	Hypothetical protein TM0936, probable catalytic do	99.62
d1e9yb2	389	alpha-subunit of urease, catalytic domain {Helicob	99.62
d1onwa2	284	Isoaspartyl dipeptidase, catalytic domain {Escheri	99.62
d2paja2	336	Hypothetical protein GOS_1943094 {Environmental sa	99.61
d2puza2	301	Imidazolonepropionase {Agrobacterium tumefaciens [	99.55
d2bb0a2	300	Imidazolonepropionase {Bacillus subtilis [TaxId: 1	99.51
d2imra2	308	Hypothetical protein DR0824 {Deinococcus radiodura	99.49
d2q09a2	301	Probable 4-imidazolone-5-propanoate amidohydrolase	99.47
d1m7ja3	358	N-acyl-D-aminoacid amidohydrolase, catalytic domai	99.45
d2p9ba2	324	Uncharacterized protein BL1453 {Bifidobacterium lo	99.4
d1kcxa1	142	Dihydropyrimidinase related protein-1 {Mouse (Mus	99.4
d2qs8a2	310	Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId:	99.39
d2icsa2	267	Putative adenine deaminase EF0837 {Enterococcus fa	99.39
d2r8ca2	311	Uncharacterized protein EAJ56179 {Unidentified org	99.38
d3be7a2	303	Zn-dependent arginine carboxypeptidase {Unidentifi	99.38
d2ftwa1	150	Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli	99.36
d2ooda2	325	Guanine deaminase {Bradyrhizobium japonicum [TaxId	99.34
d1ejxc2	385	alpha-subunit of urease, catalytic domain {Klebsie	99.28
d1m7ja2	61	N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae	99.28
d1yrra1	85	N-acetylglucosamine-6-phosphate deacetylase, NagA	99.26
d2bb0a1	113	Imidazolonepropionase {Bacillus subtilis [TaxId: 1	99.25
d1ejxc1	181	alpha-Subunit of urease {Klebsiella aerogenes [Tax	99.25
d1p1ma1	123	Hypothetical protein TM0936 {Thermotoga maritima [	99.25
d1xrta1	112	Two-domain dihydroorotase {Aquifex aeolicus [TaxId	99.24
d2p9ba1	118	Uncharacterized protein BL1453 {Bifidobacterium lo	99.23
d1gkra1	126	L-hydantoinase {Arthrobacter aurescens [TaxId: 436	99.23
d2vhla2	301	N-acetylglucosamine-6-phosphate deacetylase, NagA,	99.22
d2paja1	139	Hypothetical protein GOS_1943094 {Environmental sa	99.22
d1onwa1	105	Isoaspartyl dipeptidase {Escherichia coli [TaxId:	99.15
d1bf6a_	291	Phosphotriesterase homology protein {Escherichia c	99.07
d3be7a1	95	Zn-dependent arginine carboxypeptidase {Unidentifi	99.06
d1yixa1	265	Putative deoxyribonuclease YcfH {Escherichia coli	99.02
d1yrra2	297	N-acetylglucosamine-6-phosphate deacetylase, NagA,	99.01
d2r8ca1	102	Uncharacterized protein EAJ56179 {Unidentified org	98.96
d1o12a2	288	N-acetylglucosamine-6-phosphate deacetylase, NagA,	98.95
d1xwya1	260	Deoxyribonuclease TatD (MttC) {Escherichia coli [T	98.94
d1nfga1	127	D-hydantoinase {Burkholderia pickettii [TaxId: 329	98.9
d1nfga1	127	D-hydantoinase {Burkholderia pickettii [TaxId: 329	98.88
d1k1da1	128	D-hydantoinase {Bacillus stearothermophilus [TaxId	98.88
d1gkpa1	123	D-hydantoinase {Thermus sp. [TaxId: 275]}	98.86
d1ynya1	127	D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}	98.86
d1zzma1	259	Putative deoxyribonuclease YjjV {Escherichia coli	98.84
d2i9ua1	109	Guanine deaminase {Clostridium acetobutylicum [Tax	98.83
d1ynya1	127	D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}	98.81
d2qs8a1	96	Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId:	98.8
d1j6oa_	260	Hypothetical protein TM0667 {Thermotoga maritima [	98.78
d2fvka1	156	Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc	98.71
d1k1da1	128	D-hydantoinase {Bacillus stearothermophilus [TaxId	98.7
d1gkra1	126	L-hydantoinase {Arthrobacter aurescens [TaxId: 436	98.53
d1gkpa1	123	D-hydantoinase {Thermus sp. [TaxId: 275]}	98.53
d2puza1	103	Imidazolonepropionase {Agrobacterium tumefaciens [	98.44
d2vhla1	91	N-acetylglucosamine-6-phosphate deacetylase, NagA	98.42
d1m7ja1	55	N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae	98.24
d1kcxa1	142	Dihydropyrimidinase related protein-1 {Mouse (Mus	98.23
d4ubpc1	180	alpha-Subunit of urease {Bacillus pasteurii [TaxId	98.2
d2q09a1	103	Probable 4-imidazolone-5-propanoate amidohydrolase	98.01
d2ftwa1	150	Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli	97.98
d2ooda1	140	Guanine deaminase {Bradyrhizobium japonicum [TaxId	97.91
d1e9yb1	180	alpha-Subunit of urease {Helicobacter pylori [TaxI	97.84
d2fvka1	156	Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc	97.43
d2uz9a1	131	Guanine deaminase {Human (Homo sapiens) [TaxId: 96	97.27
d2puza1	103	Imidazolonepropionase {Agrobacterium tumefaciens [	96.88
d2hbva1	331	2-amino-3-carboxymuconate 6-semialdehyde decarboxy	96.82
d2dvta1	325	Thermophilic reversible gamma-resorcylate decarbox	96.79
d1a4ma_	349	Adenosine deaminase (ADA) {Mouse (Mus musculus) [T	96.69
d2icsa1	101	Putative adenine deaminase EF0837 {Enterococcus fa	96.66
d2ffia1	271	Putative 2-pyrone-4,6-dicarboxylic acid hydrolase	96.55
d1xrta1	112	Two-domain dihydroorotase {Aquifex aeolicus [TaxId	96.51
d1o12a1	76	N-acetylglucosamine-6-phosphate deacetylase, NagA	96.32
d2f6ka1	306	Putative amidohydrolase LP2961 {Lactobacillus plan	96.26
d2q09a1	103	Probable 4-imidazolone-5-propanoate amidohydrolase	95.69
d2amxa1	357	Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI	95.35
d1o12a1	76	N-acetylglucosamine-6-phosphate deacetylase, NagA	94.67
d1ra0a1	103	Cytosine deaminase {Escherichia coli [TaxId: 562]}	94.66
d2ooda1	140	Guanine deaminase {Bradyrhizobium japonicum [TaxId	91.32
d2qs8a1	96	Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId:	91.12
d2gwga1	342	4-oxalomesaconate hydratase LigJ {Rhodopseudomonas	89.65

>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Thermus sp. [TaxId: 275]

Probab=100.00  E-value=7.7e-40  Score=304.47  Aligned_cols=328  Identities=26%  Similarity=0.342  Sum_probs=287.4

Q ss_pred             ceeeccccCCCCCC--cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCcc
Q 013050           43 LIDVHAHLDDPGRT--EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY  120 (450)
Q Consensus        43 ~iD~H~H~~~~~~~--~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (450)
                      |||+|+|+..++..  +.+++.++++.++..|||++++|+ ++.|.....+.+....+.+.....+++.+++.+...+..
T Consensus         1 lID~HvH~~~p~~~~~~ked~~sgs~AAa~GGvTtv~dmp-n~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~   79 (335)
T d1gkpa2           1 FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMC-CPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEK   79 (335)
T ss_dssp             EEEEEECSSCEETTEECSCCHHHHHHHHHHTTEEEEEEEE-CCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECCCCCTT
T ss_pred             CcCcccccCCCCCCCccccHHHHHHHHHHhCCCeEEEECC-CCCCCCChHHHHHHHHHHHhcCCccceeeEEEEeccccc
Confidence            89999999887544  568999999999999999999998 888888888888888888888889999999988888877


Q ss_pred             chHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcccccccc
Q 013050          121 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL  200 (450)
Q Consensus       121 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (450)
                      ...++.++.+.|+.+++.++.+.   +.+..++..+.++++.+++.|..+.+|+++.......-.. ....+......+.
T Consensus        80 ~~~el~~l~~~G~~~~k~~~~~~---~~~~~d~~~l~~~~~~~~~~~~~v~~h~ed~~l~~~~~~~-~~~~~~~~~~~~~  155 (335)
T d1gkpa2          80 TEGQLREIVADGISSFKIFLSYK---NFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQK-LLSEGKTGPEWHE  155 (335)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECST---TTTBCCHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHH-HHHTTCCSGGGTT
T ss_pred             cHHHHHHHHhhhccccccccccC---CCccCCHHHHHHHHHHhhhcCCEEEEcCCcHHHHHHHHhh-hhcccccCccccc
Confidence            78889999999999999998664   3356789999999999999999999999988765432211 1133344445667


Q ss_pred             CCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCC--
Q 013050          201 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD--  278 (450)
Q Consensus       201 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~--  278 (450)
                      ...|..+|...+.+++.+++.+       +.++|+.|+++. ++++.++.+++.|..+++++++++++++.+.+...+  
T Consensus       156 ~~~p~~~E~~av~r~~~la~~~-------~~~~hi~HiSt~-~~l~~i~~ak~~g~~it~e~~~~hl~l~~~~~~~~~~~  227 (335)
T d1gkpa2         156 PSRPEAVEAEGTARFATFLETT-------GATGYVVHLSCK-PALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVE  227 (335)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHH-------TCEEEECSCCSH-HHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHHH
T ss_pred             cchhhhhHHHHHHHHHHHHHHh-------Ccccchhhhhhh-hhhhhhhhhhhcCceEEeecccchhhcCHHHHhcCCch
Confidence            8899999999999999999987       999999999998 999999999999999999999999999887765543  


Q ss_pred             -CceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHH
Q 013050          279 -TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLE  356 (450)
Q Consensus       279 -~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~  356 (450)
                       ..++++||+|...+++.+|+++.+|..++++|||.|.....|....++|+..+.|+.+++..++.++.... +.++|++
T Consensus       228 ~~~~k~~PPlRs~~d~~~L~~al~~G~id~i~SDHaP~~~e~K~~~~~~~~~~~~G~~gle~~lplll~~~V~~g~lsl~  307 (335)
T d1gkpa2         228 AMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIH  307 (335)
T ss_dssp             HHTTCCSSCCCCTHHHHHHHHHHHTTSSCEEECCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTSSSCCHH
T ss_pred             hcceecccCCCCHHHHHHHHHHHhcCCccEEEecCCCCCHHHhccCCCChhhCCCChhHHHHHHHHHHHHHHHcCCCCHH
Confidence             35789999999999999999999999999999999999999988778999999999999999999998764 5569999


Q ss_pred             HHHHHHhhchhHHhCC-CCCCccccCCC
Q 013050          357 QLASWWSERPAKLAGQ-VSKGAIAIGNH  383 (450)
Q Consensus       357 ~al~~aT~~~A~~lg~-~~~G~I~~G~~  383 (450)
                      +++++.+.|||++||+ +++|+|++|++
T Consensus       308 ~~v~~~S~nPAri~Gl~~~KG~i~~G~D  335 (335)
T d1gkpa2         308 RFVDAASTKAAKLFGLFPRKGTIAVGSD  335 (335)
T ss_dssp             HHHHHHTHHHHHHTTCTTTSSSCCTTSB
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeecCCCC
Confidence            9999999999999999 88999999984

>d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidinase related protein-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-39  Score=302.68  Aligned_cols=324  Identities=23%  Similarity=0.288  Sum_probs=280.9

Q ss_pred             ccceeeccccCCC--CCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC
Q 013050           41 PGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN  118 (450)
Q Consensus        41 PG~iD~H~H~~~~--~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (450)
                      ||+||+|+|+..|  +..++|++.++++.+++.|||++++|| ++.|.....+.+....+.++..+.+++.+++.+...+
T Consensus         1 PG~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mP-nt~P~~~~~~~~~~~~~~a~~~s~~d~~~~~~~~~~~   79 (334)
T d1kcxa2           1 PGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHV-VPEPGSSLLTSFEKWHEAADTKSCCDYSLHVDITSWY   79 (334)
T ss_dssp             ECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEE-CCCTTCCHHHHHHHHHHHHHHHCSSEEEEEEEECCCC
T ss_pred             CCeEeeeecCCCCCCCCcccchHHHHHHHHHcCCceEEEECC-CCCCCCCCHHHHHHHHHHhcccCcceeeEeeeeccCC
Confidence            9999999999998  888899999999999999999999999 8889889899998888888888899999999988887


Q ss_pred             ccchHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccc
Q 013050          119 AYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS  197 (450)
Q Consensus       119 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~  197 (450)
                      ....+++..+.+ .|+.+++.|+.+.   ..+..+.+.+.++++.+++.+..+.+|+++........... .+.+.....
T Consensus        80 ~~~~~el~~l~~~~g~~~~ki~~~~~---~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~-~~~g~~~~~  155 (334)
T d1kcxa2          80 DGVREELEVLVQDKGVNSFQVYMAYK---DLYQMSDSQLYEAFTFLKGLGAVILVHAENGDLIAQEQKRI-LEMGITGPE  155 (334)
T ss_dssp             TTHHHHHHHHHHTTCCCEEEEESCST---TTTCCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHH-HHTTCCSTH
T ss_pred             cchHHHHHHHHHhccCceeeeeeccC---CCcccCHHHHHHHHHHHhccCceeEEecCCHHHHhccccch-hhcCCcchh
Confidence            777778887765 6899999998764   23567889999999999999999999999988765432211 133344444


Q ss_pred             cccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC
Q 013050          198 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG  277 (450)
Q Consensus       198 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~  277 (450)
                      .+...+|..+|..++.+++.+++.+       +.++|+.|+++. ++++.++++++.|..++++++++++.++...+...
T Consensus       156 ~~~~~rp~~aE~~ai~r~~~la~~~-------g~~~hi~HiSt~-~~ve~i~~ak~~g~~vt~e~~~~~l~l~~~~~~~~  227 (334)
T d1kcxa2         156 GHALSRPEELEAEAVFRAIAIAGRI-------NCPVYITKVMSK-SAADIIALARKKGPLVFGEPIAASLGTDGTHYWSK  227 (334)
T ss_dssp             HHHHHSCTHHHHHHHHHHHHHHHHH-------TCCEEEEEECCH-HHHHHHHHHHHHSCCEEEEEBHHHHHCCGGGGGCS
T ss_pred             hccCCCCHHHHHHHHHHHHHHHhhc-------CCceeeccccch-HHHHHHHHHhccccceeeccchhheeecccccccC
Confidence            5667899999999999999999988       999999999999 99999999999999999999999999987766554


Q ss_pred             C----CceEEcCCCC-ChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-Hhc
Q 013050          278 D----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKY  351 (450)
Q Consensus       278 ~----~~~~~~~~~~-~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~  351 (450)
                      +    ..+..+||++ ...+++.+|+++.+|..++++|||.|+....+..+.++|+.++.|+.+++.+++.++..+ .+.
T Consensus       228 ~~~~~~~~~~~pPlr~~~~d~eaL~~~l~~G~Id~I~SDHaP~~~e~K~~~~~~f~~ap~Gi~g~e~~l~~llt~~V~~g  307 (334)
T d1kcxa2         228 NWAKAAAFVTSPPLSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVATG  307 (334)
T ss_dssp             SHHHHHHTCCSSCCCSCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTT
T ss_pred             ChhHhcceEeeeccCchhhhHHHHHHHhhcCCcceEecCCCCCCHHHhccCCCChhhCCCCcccHHHHHHHHHHHHHHcC
Confidence            3    3455666665 677899999999999999999999999999998777789999999999999999999765 556


Q ss_pred             CCCHHHHHHHHhhchhHHhCC-CCCCc
Q 013050          352 GVTLEQLASWWSERPAKLAGQ-VSKGA  377 (450)
Q Consensus       352 gls~~~al~~aT~~~A~~lg~-~~~G~  377 (450)
                      +||+++++++.|.|||++||+ +++|+
T Consensus       308 ~isl~~~v~~~s~nPA~i~gL~p~KGr  334 (334)
T d1kcxa2         308 KMDENQFVAVTSTNAAKIFNLYPRKGR  334 (334)
T ss_dssp             SSCHHHHHHHHTHHHHHHHTCTTTSSC
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            699999999999999999999 87875

>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Burkholderia pickettii [TaxId: 329]

Probab=100.00  E-value=1.8e-39  Score=300.61  Aligned_cols=323  Identities=26%  Similarity=0.352  Sum_probs=279.0

Q ss_pred             cceeeccccCCC--CCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCc
Q 013050           42 GLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA  119 (450)
Q Consensus        42 G~iD~H~H~~~~--~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (450)
                      |+||.|+|+..+  +..++|+|.++++.++..|||++++|| ++.|.....+.+....+.++....+++.+++.+.....
T Consensus         1 G~ID~HvH~r~p~~g~~~~Ed~~tgs~AAa~GGvTtv~~mp-n~~p~~~~~e~~~~~~~~a~~~s~~d~~~~~~~~~~~~   79 (330)
T d1nfga2           1 GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFC-QQDRGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTD   79 (330)
T ss_dssp             CEEEEEECCSCEETTEECSCCHHHHHHHHHHTTEEEEEEEE-ECCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSSCCH
T ss_pred             CcEeCccCCCCCCCCccccchHHHHHHHHHcCCCEEEEECC-CCCCCCCCHHHHHHHHHHHhcCCeeeecceEEEeccch
Confidence            899999999987  445778999999999999999999999 88888898999999888888888999999987776666


Q ss_pred             cchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccc
Q 013050          120 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY  199 (450)
Q Consensus       120 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (450)
                      ...+++..+.+.|+.+++.|+.+..   .+..+...+.++++.+.+.+..+.+|+++...+..... +..+.+......+
T Consensus        80 ~~~~el~~~~~~Gv~~~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~E~~~~~~~~~~-~~~~~g~~~~~~~  155 (330)
T d1nfga2          80 SVIEELEVLPDLGITSFKVFMAYRG---MNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRD-KFVAEGKTAPIYH  155 (330)
T ss_dssp             HHHHHTTTGGGGTCCEEEEESSSTT---TTBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHH-HHHHTTCCSTHHH
T ss_pred             hhHHHHhhhhhhcccceeeeccccc---cCCCCcHHHHHHHHHHHhcCCceeechHHHHHHHHHhh-hhhccCCcCchhc
Confidence            6667777888899999999987643   24578889999999999999999999999877653211 1113333444456


Q ss_pred             cCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC--
Q 013050          200 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG--  277 (450)
Q Consensus       200 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~--  277 (450)
                      ...+|..+|...+.+++.+++.+       +.++|+.|+++. ++++.++++++.|..+++++|||+++++.+.+..+  
T Consensus       156 ~~~rp~~aE~~av~r~~~la~~~-------~~~lhi~HiSt~-~~~~~i~~ak~~g~~vt~Et~ph~L~l~~~d~~~~~~  227 (330)
T d1nfga2         156 ALSRPPRVEAEATARALALAEIV-------NAPIYIVHVTCE-ESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF  227 (330)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHHHH-------TCCEEECCCCSH-HHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGCTTT
T ss_pred             ccccChHHHHHHHHHHHHHHHHh-------CCeeeechhcch-HHHHHHHHHHhcCCcccccccchhhhhhhhhhhcccc
Confidence            78899999999999999999987       999999999999 99999999999999999999999999998877554  


Q ss_pred             -CCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhh-hcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCH
Q 013050          278 -DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPEL-KLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL  355 (450)
Q Consensus       278 -~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~  355 (450)
                       +..++++||+|...+++.||+++.+|...+++|||.|+.... +.....+|+.++.|+.+++..++.+++.+.+.++|+
T Consensus       228 ~~~~~k~~PPLR~~~d~~aL~~~l~dG~Id~i~SDHaP~~~~~~~~~~~~~f~~ap~G~~gle~~lp~l~~~v~~~~l~l  307 (330)
T d1nfga2         228 EGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQGVNEGRISL  307 (330)
T ss_dssp             GGGGGCCSSCCCCHHHHHHHHHHHHTTCCSCEECCBCCCCTTTTTTTTTTCGGGSCCCBCCTTTHHHHHHHHHHTTSSCH
T ss_pred             cCceeeecCcCCcHHHHHHHhhhhcCCceeeecCCCCCccchhhHhhccCCHhHCCCCcCHHHHHHHHHHHHHHcCCCCH
Confidence             567899999999999999999999999999999999986532 223345799999999999999999998888889999


Q ss_pred             HHHHHHHhhchhHHhCC-CCCCc
Q 013050          356 EQLASWWSERPAKLAGQ-VSKGA  377 (450)
Q Consensus       356 ~~al~~aT~~~A~~lg~-~~~G~  377 (450)
                      ++++++.+.|||++||+ +++|+
T Consensus       308 ~~~v~~~S~nPAki~gL~p~KGt  330 (330)
T d1nfga2         308 TQFVELVATRPAKVFGMFPQKGT  330 (330)
T ss_dssp             HHHHHHHTHHHHHHTTCTTTSSS
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999 88986

>d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=3.1e-39  Score=299.24  Aligned_cols=324  Identities=22%  Similarity=0.272  Sum_probs=279.9

Q ss_pred             ccceeeccccCCC--CCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC
Q 013050           41 PGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN  118 (450)
Q Consensus        41 PG~iD~H~H~~~~--~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (450)
                      |||||+|+|+..+  +..+++++.++++.+++.|||++++|+ ++.|.....+.+....+.+.....+++.+++.....+
T Consensus         1 PG~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mp-n~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~   79 (334)
T d2ftwa2           1 PGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFV-IPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWS   79 (334)
T ss_dssp             ECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEE-CCCTTCCHHHHHHHHHHHHHTTCSSEEEEEEECCSCC
T ss_pred             CCeEcceecCCCCCCCCcccccHHHHHHHHHhCCCeEEEECC-CCCCCCCcHHHHHHHHHHHhcCCcceeeEEEeecCcc
Confidence            9999999999988  788889999999999999999999999 8888888888888888888888899999999888777


Q ss_pred             ccchHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccc
Q 013050          119 AYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS  197 (450)
Q Consensus       119 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~  197 (450)
                      ....+++..+.+ .|+.+++.|+.++..   ...+.+.+.++++.+++.+..+.+|+++........+.. .+.+.....
T Consensus        80 ~~~~~e~~~l~~~~g~~~~k~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~H~E~~~~~~~~~~~~-~~~g~~~~~  155 (334)
T d2ftwa2          80 EQVSREMEILVKERGVNSFKCFMAYKNS---FMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKM-LEMGITGPE  155 (334)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEEESSCTTT---TBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHH-HHTTCCSTH
T ss_pred             hhhhHhHHHHHHhcCccccceeeccccc---cccccHHHHHHHHHHhhcCCceeecchhHHHHhhcchhh-hccCCCCcc
Confidence            776777777765 799999999866432   356778899999999999999999999988766542221 122333344


Q ss_pred             cccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC
Q 013050          198 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG  277 (450)
Q Consensus       198 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~  277 (450)
                      .+....|..+|...+.+++.+++..       +.++|+.|+++. ++++.++++++.|..++++++|++++++.+.+...
T Consensus       156 ~~~~~rp~~aE~~~v~r~~~la~~~-------~~~lhi~HiSt~-~~~~~i~~ak~~G~~vt~e~~ph~L~l~~~~~~~~  227 (334)
T d2ftwa2         156 GHELSRPEALEAEATNRAIVIADSV-------CTPVYIVHVQSI-GAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNH  227 (334)
T ss_dssp             HHHHHSCTHHHHHHHHHHHHHHHHH-------TCCEEECSCCCH-HHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCS
T ss_pred             cccccCcHHHHHHHHHHHHHHHHhh-------ccceeeccccch-hhhhhHHHhcccCCceeeccccceeeccHHHHhcc
Confidence            5667899999999999999999987       999999999999 99999999999999999999999999998877654


Q ss_pred             C----CceEEcCCCCCh-hhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-Hhc
Q 013050          278 D----TRFKCAPPIRDA-ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKY  351 (450)
Q Consensus       278 ~----~~~~~~~~~~~~-~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~  351 (450)
                      +    ..++++||+|.. .+++.+|+++.+|...+++|||.|.....+..+.++|+.++.|+.+++.+++.++..+ .+.
T Consensus       228 d~~~~~~~~~~PPlR~~~~d~~~L~~~l~~G~Id~iaSDHaPh~~e~K~~~~~~f~~a~~Gi~glet~lpll~~~~v~~g  307 (334)
T d2ftwa2         228 DWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTG  307 (334)
T ss_dssp             SHHHHHTTCCSSCCCCCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTT
T ss_pred             chhhccceEeeccccccHhhhhhHHHHhhCCCccceecCCCCCCHHHHhcCCCChhhCCCCccCHHHHHHHHHHHHHHcC
Confidence            3    457899999865 5788999999999999999999999999998777789999999999999999999754 566


Q ss_pred             CCCHHHHHHHHhhchhHHhCC-CCCCc
Q 013050          352 GVTLEQLASWWSERPAKLAGQ-VSKGA  377 (450)
Q Consensus       352 gls~~~al~~aT~~~A~~lg~-~~~G~  377 (450)
                      +||+++++++.|.|||++||+ +++|+
T Consensus       308 ~lsl~~~v~~~s~nPAki~gL~p~KGr  334 (334)
T d2ftwa2         308 KLTWCQFVRATSSERARIFNIYPRKGR  334 (334)
T ss_dssp             SSCHHHHHHHHTHHHHHHTTCTTTSSC
T ss_pred             CCCHHHHHHHHhHHHHHHhCCCCCCCC
Confidence            799999999999999999999 88885

>d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: D-hydantoinase
species: Bacillus sp. AR9 [TaxId: 301298]

Probab=100.00  E-value=1.6e-38  Score=294.89  Aligned_cols=323  Identities=28%  Similarity=0.375  Sum_probs=277.6

Q ss_pred             cceeeccccCCC--CCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCc
Q 013050           42 GLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA  119 (450)
Q Consensus        42 G~iD~H~H~~~~--~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (450)
                      |+||+|+|+..+  +..++|+|.++++.++..|||++++|| ++.|..+..+.+....+.+.....+++.+++.....+.
T Consensus         1 G~ID~HvH~r~p~~g~~~~ed~~tgs~AAa~GGvTtv~~mp-nt~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~   79 (332)
T d1ynya2           1 GGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFC-LTKKGESLKSAIATWHEKARGKAVIDYGFHLMIAEAND   79 (332)
T ss_dssp             CEEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEEE-CCCSSCCHHHHHHHHHHHHTTTCSSEEEEEEECSCCCH
T ss_pred             CceeCccCCCCCCCCCcccccHHHHHHHHHhCCCcEEEECC-CCCCCCCCHHHHHHHHHHHhccCccceeeEEEEecccc
Confidence            899999999987  778889999999999999999999999 88888999999999988888888899999988777776


Q ss_pred             cchHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcccccc
Q 013050          120 YNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST  198 (450)
Q Consensus       120 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~  198 (450)
                      ....++..+.. .|+.+++.|+.+..   .+..+.+.+.++++.+++.|..+.+|+++...+........ ..+......
T Consensus        80 ~~~~el~~~~~~~g~~~~k~~~~~~~---~~~~d~~~l~~~l~~~~~~~~~~~~h~Ed~~~~~~~~~~~~-~~g~~~~~~  155 (332)
T d1ynya2          80 QVLEELESVISSEGITSLKVFMAYKN---VFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKAL-AEGNTDPIY  155 (332)
T ss_dssp             HHHHHHHHHHHTSCCCEEEEESCSTT---TTCCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHH-HTTCCSTTH
T ss_pred             chhHHHHHHHhhhcccceeeeecccc---ccccCHHHHHHHHHHHhhcCCEEeechhhHHHHHHHHHHHH-hcCCCCchh
Confidence            66667777765 68999999986642   24568899999999999999999999998876543222111 222333344


Q ss_pred             ccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC-
Q 013050          199 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG-  277 (450)
Q Consensus       199 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~-  277 (450)
                      +....|...|...+.+++.+++.+       +.++|+.|+++. ++++.++++++.|..+++++||+|++++.+.+..+ 
T Consensus       156 ~~~~~p~~aE~~ai~r~~~la~~~-------g~~~hi~hiSt~-~~~~~i~~ak~~g~~vt~e~~ph~L~l~~~~~~~~~  227 (332)
T d1ynya2         156 HAYTRPPEAEGEATGRAIALTALA-------GSQLYVVHVSCA-SAVQRIAEAREKGWNVYGETCPQYLALDVSIMDQPD  227 (332)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHHHH-------TCCEEECSCCSH-HHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGCCSS
T ss_pred             ccccchhhHHHHHHHHHHHhhhhh-------cccccccccccc-hHHHHHHHHHHhCCCceeccccccccCCHHHHhhhh
Confidence            567899999999999999999988       999999999999 99999999999999999999999999998887664 


Q ss_pred             --CCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhh-cccCCCccccCCCCcchhhHHHHHHHH-HHhcCC
Q 013050          278 --DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK-LLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGV  353 (450)
Q Consensus       278 --~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gl  353 (450)
                        +..++++||+|...+++.+|+++.+|...+++|||.|.....+ ....++|+.++.|+.+++..++.++.. +.+.+|
T Consensus       228 ~~g~~~k~~PPLRs~~dr~aL~~al~~G~id~i~SDHaP~~~~~kk~~~~~~f~~a~~G~~g~e~~l~~~~~~~v~~g~l  307 (332)
T d1ynya2         228 FEGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDRLTILYSEGVRQGRI  307 (332)
T ss_dssp             SGGGGGCCSSCCCCTTHHHHHHHHHHTTSSCEECCCBCCCCTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHHTTTTTSS
T ss_pred             ccCceeEecCccccHHHHHHHHHHHhcCCeeEEEecCCCCCHHHHhhccCCCcccCCCccchHHHHHHHHHHHHHHcCCC
Confidence              4678999999999999999999999999999999999875543 344678999999999999999999875 456679


Q ss_pred             CHHHHHHHHhhchhHHhCC-CCCCc
Q 013050          354 TLEQLASWWSERPAKLAGQ-VSKGA  377 (450)
Q Consensus       354 s~~~al~~aT~~~A~~lg~-~~~G~  377 (450)
                      |+++++++.|.|||++||+ +++|+
T Consensus       308 sl~~~v~~~s~nPAki~GL~p~KGt  332 (332)
T d1ynya2         308 SLNQFVDISSTKAAKLFGMFPRKGT  332 (332)
T ss_dssp             CHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred             CHHHHHHHHhHHHHHHhCCCCCCCC
Confidence            9999999999999999999 88886

>d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: L-hydantoinase
species: Arthrobacter aurescens [TaxId: 43663]

Probab=100.00  E-value=4.9e-38  Score=291.43  Aligned_cols=322  Identities=30%  Similarity=0.447  Sum_probs=279.4

Q ss_pred             cceeeccccCCCCCCccc-chHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCCcc
Q 013050           42 GLIDVHAHLDDPGRTEWE-GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY  120 (450)
Q Consensus        42 G~iD~H~H~~~~~~~~~~-~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (450)
                      |+||+|+|+..++..+.+ ++.++++.++..|||++++|| ++.|..+..+.+....+.+.....+++.+++.....+  
T Consensus         1 G~ID~HvH~repg~~~ke~~~~tgs~AAa~GGvTtv~~mP-nt~P~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~--   77 (325)
T d1gkra2           1 GVVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMP-ITFPPTTTLDAFLEKKKQAGQRLKVDFALYGGGVPGN--   77 (325)
T ss_dssp             CEEEEEEECCCGGGTTTSCCHHHHHHHHHHHTEEEEEECS-CSSSCSCSHHHHHHHHHHHHHHCSSEEEEEEECCTTC--
T ss_pred             CcEeCCcCCCCCCCCCcccHHHHHHHHHHccCCceEEECC-CCCCCcCCHHHHHHHHHHhccCCcccccccccccccc--
Confidence            899999999988877665 699999999999999999999 8899888888888888888888889999987665543  


Q ss_pred             chHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcccccccc
Q 013050          121 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL  200 (450)
Q Consensus       121 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (450)
                       ...+..+...|+.+++.+.........+..+...+.++++.+++.|..+.+|+++...+.... ....+.+......+.
T Consensus        78 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~H~E~~~l~~~~~-~~~~~~g~~~~~~~~  155 (325)
T d1gkra2          78 -LPEIRKMHDAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQ-KQIKAAGGKDMAAYE  155 (325)
T ss_dssp             -HHHHHHHHHTTCCEEEEESSCSBTTTBCBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHH-HHHHHTTCCSHHHHH
T ss_pred             -HHHHHhhhhcccceeccccccccCCccccccHHHHHHHHHHHHhcCCceEeccCcHHHHHHHH-HHhhhcCCccccccc
Confidence             445667778899999998766544444567788899999999999999999999887754321 111233444445566


Q ss_pred             CCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCc
Q 013050          201 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR  280 (450)
Q Consensus       201 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~  280 (450)
                      ...|..+|...+.+.+.+++..       +.++|+.|+++. ++++.++++++.|..++++++|+++.++.+.+..++..
T Consensus       156 ~~rp~~aE~~~v~r~~~la~~~-------~~~~hi~hiSs~-~~l~~i~~ak~~g~~vt~et~ph~L~lt~~~~~~~~~~  227 (325)
T d1gkra2         156 ASQPVFQENEAIQRALLLQKEA-------GCRLIVLHVSNP-DGVELIHQAQSEGQDVHCESGPQYLNITTDDAERIGPY  227 (325)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHH-------CCEEEECCCCSH-HHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHHHGGG
T ss_pred             ccCchHHHHHHHHHHHHHhhhc-------CcceeccccccH-HHHHhhhhhhhcCCceEEeecccccccchhhhhccCcc
Confidence            7889999999999999999988       999999999999 99999999999999999999999999999888778889


Q ss_pred             eEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHH
Q 013050          281 FKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLA  359 (450)
Q Consensus       281 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al  359 (450)
                      ++++||+|...+++.+|+++..|...+++|||.|+....|..+.++|+.++.|+.+++..++.++.. +.+.+||+++++
T Consensus       228 ~k~~PPlR~~~Dr~aL~~al~~G~id~i~SDHaPh~~~~K~~~~~~~~~a~~G~~g~e~~lp~~~~~~v~~g~lsl~~~v  307 (325)
T d1gkra2         228 MKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLV  307 (325)
T ss_dssp             GCCSSCCCCHHHHHHHHHHHHHTCCCEECCCEECCCGGGTGGGGTCGGGSCCCBCCTTTHHHHHHHHTGGGTSSCHHHHH
T ss_pred             cccchhhhhhhhhHHHHHHHhcCcceEEecCCCCCCHHHhccCCCccccCCCCcccHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            9999999999999999999999999999999999999998877778999999999999999999975 456669999999


Q ss_pred             HHHhhchhHHhCC-CCCC
Q 013050          360 SWWSERPAKLAGQ-VSKG  376 (450)
Q Consensus       360 ~~aT~~~A~~lg~-~~~G  376 (450)
                      +..|.|||++||+ +++|
T Consensus       308 ~~~s~nPAki~gl~p~KG  325 (325)
T d1gkra2         308 EVMCEKPAKLFGIYPQKG  325 (325)
T ss_dssp             HHHTHHHHHHHTCTTTSS
T ss_pred             HHHhHHHHHHhCCCCCCC
Confidence            9999999999999 7776

>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

Probab=100.00  E-value=4.9e-37  Score=288.39  Aligned_cols=322  Identities=23%  Similarity=0.351  Sum_probs=258.2

Q ss_pred             cceeeccccCCCCC---CcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHH-----HHHHHhcCCceEEEEecc
Q 013050           42 GLIDVHAHLDDPGR---TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKL-----KVDAAEKRIYVDVGFWGG  113 (450)
Q Consensus        42 G~iD~H~H~~~~~~---~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  113 (450)
                      |+||+|+|+..|+.   .+++++.++++.++..||||+++|| ++.+.......+..     ..........++|+++..
T Consensus         1 G~ID~HvH~rePg~~~~~~~ed~~tgs~AAa~GGvTtvi~mp-~~~p~~~~~~~~~~~~~~~~~~~a~~~~~vdy~~~~~   79 (384)
T d2fvka2           1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFS-TQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLI   79 (384)
T ss_dssp             CEEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEEE-ECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEE
T ss_pred             CceeCCcCCCCCCCCCCcccchHHHHHHHHHcCCceEEEECC-CCCCCCCCHHHHHHHHHHHHHHHHhcCccceeeEEEE
Confidence            89999999998866   5678999999999999999999998 66655443333222     223345678899998876


Q ss_pred             ccCCCccch--------HHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhh
Q 013050          114 LVPENAYNA--------SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK  185 (450)
Q Consensus       114 ~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~  185 (450)
                      .........        ..+..+.+.|+.+++.|+.+++.    ..+.+.+.++++.+++.|..+.+|+++...+.....
T Consensus        80 ~~~~~~~~~~~~el~~~~~~~~~~~~Gv~~~k~f~~~~~~----~~~~~~l~~~l~~~~~~g~~v~~H~Ed~~~~~~~~~  155 (384)
T d2fvka2          80 LFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGL----QISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIE  155 (384)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHHHCCCEEEEESSSTTT----BCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHH
T ss_pred             EeCCCCccchHHHHHhHHHHHHcccCcccccceecccccc----ccCHHHHHHHHHHHHhcCCceeeccccHHHHHHHHH
Confidence            655443211        11223345799999999877542    467888999999999999999999998887653221


Q ss_pred             hccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcc
Q 013050          186 LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPH  265 (450)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~  265 (450)
                      . ..+.+......+...+|..+|..++.+++.+++.+       +.++|+.|+++. ++++.++++++.|..|++++|||
T Consensus       156 ~-~~~~g~~~~~~~~~~rP~~aE~~av~r~~~la~~~-------g~~lhi~HiSt~-~~ve~I~~ak~~G~~Vt~Et~ph  226 (384)
T d2fvka2         156 A-LEEQGLTDAYYHGVSRPSIVEGEATNRAITLATTM-------DTPILFVHVSSP-QAAEVIKQAQTKGLKVYAETCPQ  226 (384)
T ss_dssp             H-HHHTTCCSTTHHHHTSCHHHHHHHHHHHHHHHHHT-------TCCEEECSCCCH-HHHHHHHHHHHHTCCEEEEECHH
T ss_pred             H-HhhcCCCChhhcccccccchhhHHHHHHHHHHHhc-------CceEEecccccc-hhhHHHHHhhhcCCCEEEEeChH
Confidence            1 11233334445668899999999999999999987       999999999999 99999999999999999999999


Q ss_pred             hhcccccccC------------------------------CCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCC
Q 013050          266 YLAFSAEEIP------------------------------DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT  315 (450)
Q Consensus       266 ~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~  315 (450)
                      |++++.+.+.                              ..+..++++||+|...+++.||+++.+|...+++|||.|+
T Consensus       227 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~k~~PPLR~~~dr~aL~~~l~dG~Id~IaSDHaP~  306 (384)
T d2fvka2         227 YALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSY  306 (384)
T ss_dssp             HHHCCGGGGSCC--------CCSCCGGGSSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHHHHTSCSEECCCBCCC
T ss_pred             HhhccchhhcccccccccccccccccccccccccccccccccCceeEEcCCCCCHHHHHHHHHHhhCCceeEEecCCCCC
Confidence            9999876432                              2356789999999999999999999999999999999999


Q ss_pred             Chhhhccc-------------CCCccccCCCCcchhhHHHHHHHHH-HhcC-CCHHHHHHHHhhchhHHhCC-CCCCc
Q 013050          316 VPELKLLD-------------EGNFLKAWGGISSLQFVLPVTWSYG-RKYG-VTLEQLASWWSERPAKLAGQ-VSKGA  377 (450)
Q Consensus       316 ~~~~~~~~-------------~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g-ls~~~al~~aT~~~A~~lg~-~~~G~  377 (450)
                      ....+...             .++|+.++.|+.+++.+++.+++.. .+.+ +|+++++++.+.|||++||+ +++|+
T Consensus       307 ~~~eK~~~~~~~~~~~~~~~~~~df~~ap~G~~gle~~lpll~~~~v~~~~~~sl~~lv~~~s~nPAki~Gl~p~KGs  384 (384)
T d2fvka2         307 NYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS  384 (384)
T ss_dssp             BSSCCSSTTBGGGGEEGGGTEESCGGGSCCCBCCTTTHHHHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred             CHHHhcccccccccccccccccCccccCCCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHhHHHHHHhCCCCCCCC
Confidence            77665432             3579999999999999999999864 4444 58999999999999999999 88885

>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase), catalytic domain
domain: Two-domain dihydroorotase
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=3.9e-35  Score=270.42  Aligned_cols=309  Identities=29%  Similarity=0.406  Sum_probs=225.2

Q ss_pred             cceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC-cc
Q 013050           42 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AY  120 (450)
Q Consensus        42 G~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  120 (450)
                      |+||+|+|+..|+..+.+++.++++.++..|||++++|| ++.|.....+.+....+.......+++.+++.+.... ..
T Consensus         1 G~ID~HvHlr~PG~~~~ed~~tgs~AAa~GGvTtv~~mP-nt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (310)
T d1xrta2           1 GFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRKGK   79 (310)
T ss_dssp             CEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECS-CSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBGGGCSS
T ss_pred             CcEeCcccCCCCCccccccHHHHHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHhhccCCcccccceeeccCCccc
Confidence            899999999999988889999999999999999999999 8888888888888888877777788898887766543 23


Q ss_pred             chHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCcccccccc
Q 013050          121 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL  200 (450)
Q Consensus       121 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (450)
                      ....+..+...|+..+..       .+.+..+...+.++++.+.+.+.++.+|+++....... .    +........+.
T Consensus        80 ~~~~~~~~~~~g~~~f~~-------~~~~~~d~~~l~~~~~~~~~~~~~~~~h~e~~~~~~~~-~----~~~~~~~~~~~  147 (310)
T d1xrta2          80 EIADFYSLKEAGCVAFTD-------DGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGV-I----NEGEVSALLGL  147 (310)
T ss_dssp             SBCCHHHHHHHTCCCBCC-------TTSCCCCHHHHHHHHHHHHHHTCEEEECCCGGGGTC-------------------
T ss_pred             hhhhhhhcccCcEEEEEC-------CCCCccCHHHHHHHHHHhhhhhhhhhhccchhhhhhhh-h----hhhhcccccCc
Confidence            344566666677755432       33346788999999999999999999999886653322 2    22222333455


Q ss_pred             CCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCc
Q 013050          201 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR  280 (450)
Q Consensus       201 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~  280 (450)
                      ...|..+|...+.+.+.+++..       +.++|+.|+++. ++++.++.++..|..+++++||+++.++.+.+...+..
T Consensus       148 ~~rp~~~E~~ai~r~~~la~~~-------~~~~~i~HiSt~-~~l~~i~~a~~~g~~vt~e~~ph~L~l~~~~~~~~~~~  219 (310)
T d1xrta2         148 SSRAPEAEEIQIARDGILAQRT-------GGHVHIQHVSTK-LSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGAN  219 (310)
T ss_dssp             ------CHHHHHHHHHHHHHHH-------CCEEEESCCCSH-HHHHHHHHHHHTTCCEEEEECGGGGC------------
T ss_pred             cccchHHHHHHHHHHHHHHhhc-------CCeeeccccchH-HHHHHHHHHHHcCCceecchHHHHhhccccccccccch
Confidence            6788888999999999999977       999999999999 99999999999999999999999999999888888888


Q ss_pred             eEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHH
Q 013050          281 FKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLAS  360 (450)
Q Consensus       281 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~  360 (450)
                      ++++||+|...+++.||+++..|...+++||+.|+....+.    .|+..+.|+.+++..++.+++.+.+.++|++++++
T Consensus       220 ~k~~PplR~~~d~~aL~~al~~G~id~i~SDHaPh~~~~K~----~~~~~~~G~~g~e~~lp~l~~~v~~g~l~l~~~v~  295 (310)
T d1xrta2         220 ARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKE----LVEFAMPGIIGLQTALPSALELYRKGIISLKKLIE  295 (310)
T ss_dssp             ----------CCHHHHHHHHHHTCSCEECCCBCCCCC---------------CCCCGGGHHHHHHHHHHTTSSCHHHHHH
T ss_pred             hhhcccCCCHHHHHHHHHHHhcCCCeEEecCCCCCCHHHcc----CcccCCCCceeHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            99999999999999999999999999999999998776652    36667889999999999999888888899999999


Q ss_pred             HHhhchhHHhCCCCCC
Q 013050          361 WWSERPAKLAGQVSKG  376 (450)
Q Consensus       361 ~aT~~~A~~lg~~~~G  376 (450)
                      ..+.|||+++|+ +.|
T Consensus       296 ~~s~npAki~gL-~~G  310 (310)
T d1xrta2         296 MFTINPARIIGV-DLG  310 (310)
T ss_dssp             HHTHHHHHHHTC-SCS
T ss_pred             HHHHHHHHHhCC-CCC
Confidence            999999999999 454

>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Dihydroorotase
domain: Dihydroorotase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.2e-24  Score=201.30  Aligned_cols=331  Identities=16%  Similarity=0.148  Sum_probs=239.9

Q ss_pred             EEeccceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHh--cCCceEEEEecccc
Q 013050           38 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE--KRIYVDVGFWGGLV  115 (450)
Q Consensus        38 ~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  115 (450)
                      +=+|--.|+|+|+.+      +........+.+.|+|++++|| |+.|.....+.+..+.+++.  ......+.++....
T Consensus         4 ~~~~~~~D~HvH~Re------g~~~~~t~aa~agG~t~v~~MP-NT~Ppi~t~e~~~~~~~ri~~~~~~~~~~~~~~~~~   76 (343)
T d2eg6a1           4 LKIRRPDDWHLHLRD------GDMLKTVVPYTSEIYGRAIVMP-NLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY   76 (343)
T ss_dssp             EEEECCCEEEECCCS------HHHHHHHHHHHHTTCSEEEECC-CCSSCCCSHHHHHHHHHHHHHHSCTTCCCEEEEEEE
T ss_pred             eEECCCCcceEecCC------CchHhHHHHHHhccCCEEEECC-CCCCCCCCHHHHHHHHHHHHHhccccCceeeeeeee
Confidence            446778999999975      2245566778899999999999 99999999998877655442  22223333333333


Q ss_pred             CCCccchHHHHHHHHcC-CcEEEEecccC-CCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCc
Q 013050          116 PENAYNASALEALLNAG-VLGLKSFMCPS-GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT  193 (450)
Q Consensus       116 ~~~~~~~~~~~~~~~~g-~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~  193 (450)
                      .........+.+....+ ...++.+.... ...+....+...+...++.++..+..+..|.+....              
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--------------  142 (343)
T d2eg6a1          77 LTDSLDPNELERGFNEGVFTAAKLYPANATTNSSHGVTSVDAIMPVLERMEKIGMPLLVHGEVTHA--------------  142 (343)
T ss_dssp             CCTTCCHHHHHHHHHTTSEEEEEECCCCTTSCTTTCCSCGGGGHHHHHHHHHHTCCEEECCCCCCT--------------
T ss_pred             ccCCCChhhhhhhhhccccccccccccchhccccccccchHHHHHHHHHHHHhCchhhhcCccccc--------------
Confidence            33333344455555544 44455544322 112334556777888899999999999999865432              


Q ss_pred             cccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccc
Q 013050          194 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE  273 (450)
Q Consensus       194 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~  273 (450)
                           .....+...+...+.+.+.++...       +.++|+.|+++. ++++.++   +++..+++++||||++++.++
T Consensus       143 -----~~~~~~~eae~~~~~~~~~l~~~~-------~~~~Hi~HiSt~-~~v~~ir---~~~~~vt~EvtPHhL~L~~~d  206 (343)
T d2eg6a1         143 -----DIDIFDREARFIESVMEPLRQRLT-------ALKVVFEHITTK-DAADYVR---DGNERLAATITPQHLMFNRNH  206 (343)
T ss_dssp             -----TSCGGGHHHHHHHHTHHHHHHHCT-------TCCEEECSCCSH-HHHHHHH---TSCTTEEEEECHHHHHCCHHH
T ss_pred             -----cccccchhhhhHHHHHHHHHhhcc-------CceEEEEecchh-HHHHHHH---hcCCCcceeecCcHHHhhhhh
Confidence                 112334455666777788888755       999999999998 7777665   445679999999999999887


Q ss_pred             cCCC--CCceEEcCCCCChhhHHHHHHHHhcC-CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHh
Q 013050          274 IPDG--DTRFKCAPPIRDAANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK  350 (450)
Q Consensus       274 ~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  350 (450)
                      +...  +..++++||+|...+++.+|.++..| +.++++|||.|.....+.     +...+.|..+.+..++.++..+..
T Consensus       207 ~~~~~~~~~~k~nPPlR~~~d~~~l~~~~~~g~i~d~iatDHaPh~~e~K~-----~~~~~~g~~g~e~~l~l~l~~~~~  281 (343)
T d2eg6a1         207 MLVGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKE-----SSCGCAGCFNAPTALGSYATVFEE  281 (343)
T ss_dssp             HHTTSBCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHS-----STTBCCCCCCTTTHHHHHHHHHHH
T ss_pred             hhcCCCccceeeeccccccchhhHHHHHHHcCCCeeeeecCCCCccccccc-----ccccccccCChHHHHHHHHHHHHh
Confidence            6543  45678999999999999888777766 557899999999877663     445667899999999998876655


Q ss_pred             cCCCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccC-CceEeeEEE
Q 013050          351 YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYL-GRRLSGKVL  423 (450)
Q Consensus       351 ~gls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~  423 (450)
                       .+++++++++.+.|||+++|+ ++.|.|        ++.  +..|++..+ .+.+... ++||. |..+.++|+
T Consensus       282 -~~~L~~lv~~~S~nPaki~gL~~~kg~I--------~~~--~~~~~v~~~-~~~sk~~-~tPf~~g~~l~w~vk  343 (343)
T d2eg6a1         282 -MNALQHFEAFCSVNGPQFYGLPVNDTFI--------ELV--REEQQVAES-IALTDDT-LVPFLAGETVRWSVK  343 (343)
T ss_dssp             -TTCGGGHHHHHHTHHHHHHTCCCCCSEE--------EEE--CCCEECCSC-EECSSSE-ECCTTTTCEESCEEC
T ss_pred             -cCCHHHHHHHHhHhHHHHhCCCCCCCeE--------EEe--cCceecCcc-ccCCCCC-eEecCCCCccceeeC
Confidence             569999999999999999999 666653        333  456888777 6677777 99999 888777763

>d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Cytosine deaminase catalytic domain
domain: Cytosine deaminase catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=4.2e-16  Score=142.55  Aligned_cols=262  Identities=15%  Similarity=0.065  Sum_probs=132.5

Q ss_pred             HHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccc-cCCCccchHHHHHHHHcCCcEEEEeccc
Q 013050           64 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL-VPENAYNASALEALLNAGVLGLKSFMCP  142 (450)
Q Consensus        64 ~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~  142 (450)
                      ..+.++++|||++.+++.........................+........ ........+.+.+..+.+..........
T Consensus        52 ~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (320)
T d1ra0a2          52 TLKWQIANGIQHVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEALRLGADVVGAIPHF  131 (320)
T ss_dssp             HHHHHHHTTEEEEEEEEECCSTTCHHHHHHHHHHHHHTTTCEEEEEEECTTCSSSSTTHHHHHHHHHHTTCSEECCCGGG
T ss_pred             HHHHHHhCCeEEEEeccccccchHHHHHHHHHHHHhhcccccccccccccccccCcHHHHHHHHHHHHhcccccccCCCC
Confidence            456889999999999862222222222222222222223322333222221 1222334556667777776655543222


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhh
Q 013050          143 SGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDT  222 (450)
Q Consensus       143 ~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~  222 (450)
                      .   .......+.+..+++.|++.|+++.+|+........                       ...............  
T Consensus       132 ~---~~~~~~~~~~~~~~~~A~~~g~~~~~h~~~~~~~~~-----------------------~~~~~~~~~~~~~~~--  183 (320)
T d1ra0a2         132 E---FTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQS-----------------------RFVETVAALAHHEGM--  183 (320)
T ss_dssp             S---SSHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCTTC-----------------------CHHHHHHHHHHHHTC--
T ss_pred             C---CCccccHHHHHHHHHHHHHcCCCeeeeecccchhHH-----------------------HhhhhHHHHHHHhhc--
Confidence            1   112245788889999999999999999844321000                       000111111111111  


Q ss_pred             ccCCCCCCceEEEEecC-----ChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHH
Q 013050          223 RTDGPAEGAHLHIVHLS-----DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLW  297 (450)
Q Consensus       223 ~~~~~~~~~~~~~~h~~-----~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  297 (450)
                             ..+....|+.     ......+.+..+.+.++.+..  +|.....-......       .+....   .....
T Consensus       184 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~p~~~~~~~~~~~~-------~~~~~~---~~~~~  244 (320)
T d1ra0a2         184 -------GARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVA--NPLVNIHLQGRFDT-------YPKRRG---ITRVK  244 (320)
T ss_dssp             -------GGGEEEEECGGGGGSCHHHHHHHHHHHHHHTCEEEE--CHHHHHHHTTTTCC-------SSCCCC---CCCHH
T ss_pred             -------ccccccccceeccccchhhhHHHHHHhhhcCcEEEe--ccchhhhhcccccc-------cccccc---cCchh
Confidence                   2333344443     111344555666666655544  55432221111000       000000   01235


Q ss_pred             HHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCCCCC
Q 013050          298 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKG  376 (450)
Q Consensus       298 ~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~~~~G  376 (450)
                      ...+.|+.+.++||..... ..           +.+.......+........ ..++|++++|+|+|.|||++||+++ |
T Consensus       245 ~~~~~G~~v~~gtd~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~s~~eal~~aT~ngA~aLgl~~-G  311 (320)
T d1ra0a2         245 EMLESGINVCFGHDGVFDP-WY-----------PLGTANMLQVLHMGLHVCQLMGYGQINDGLNLITHHSARTLNLQD-Y  311 (320)
T ss_dssp             HHHHTTCCEEECCBCSSBT-TB-----------SCCCCCHHHHHHHHHHHTTCCSHHHHHGGGGGGTHHHHHHTTCSS-C
T ss_pred             hHhhcCceEeecCCcCCCC-CC-----------CCCChhHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhCCCC-C
Confidence            6677899999999964321 11           0111111111221111122 2348999999999999999999955 9


Q ss_pred             ccccCCCcc
Q 013050          377 AIAIGNHAD  385 (450)
Q Consensus       377 ~I~~G~~AD  385 (450)
                      +|+|||+||
T Consensus       312 si~~Gk~AD  320 (320)
T d1ra0a2         312 GIAAGNSAN  320 (320)
T ss_dssp             SSCTTSBCC
T ss_pred             ccCCCCCcC
Confidence            999999998

>d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Guanine deaminase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1e-15  Score=140.08  Aligned_cols=165  Identities=15%  Similarity=0.034  Sum_probs=93.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCC
Q 013050          149 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA  228 (450)
Q Consensus       149 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~  228 (450)
                      ...+++.++++.+.|+++|+++.+|+.........+.... ..          .          ........+.  .  .
T Consensus       141 ~~~~~e~l~~~~~~a~~~g~~~~~H~~e~~~e~~~~~~~~-~~----------~----------~~~~~~~~~~--g--~  195 (313)
T d2uz9a2         141 LSCSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLY-PS----------Y----------KNYTSVYDKN--N--L  195 (313)
T ss_dssp             GGCCHHHHHHHHHHHHHHTCEEEEEESCSHHHHHHHHHHS-TT----------S----------SSHHHHHHHT--T--C
T ss_pred             ccccHHHHHHHHHHhhccccceeeehhcchhHHHHHHHhh-cc----------c----------CChHHHHHHc--C--C
Confidence            4578899999999999999999999954332111111000 00          0          0011111111  0  1


Q ss_pred             CCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEE
Q 013050          229 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML  308 (450)
Q Consensus       229 ~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  308 (450)
                      -+.++.+.|+...  +.+.++.+++.+..+..  ||.........          .+         .+.++++.|+.+++
T Consensus       196 l~~~~~~~H~~~l--~~~e~~~l~~~g~~~~~--~P~~~~~~~~~----------~~---------~v~~l~~~Gv~val  252 (313)
T d2uz9a2         196 LTNKTVMAHGCYL--SAEELNVFHERGASIAH--CPNSNLSLSSG----------FL---------NVLEVLKHEVKIGL  252 (313)
T ss_dssp             CSTTEEEEECTTC--CHHHHHHHHHHTCEEEE--CHHHHHHTTCC----------CC---------CHHHHHHTTCEEEE
T ss_pred             cCCcceEEeeeec--chhHHHHHhhhcccccc--cchhhhhcccc----------cc---------chhhhhccCceEEE
Confidence            1456777788752  22345556666765554  77654332111          11         14566889999999


Q ss_pred             cCCCCCCChhhhcccCCCccccCCCCcchhhH-HHHHHHHHH------hcCCCHHHHHHHHhhchhHHhCC-CCCCc
Q 013050          309 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFV-LPVTWSYGR------KYGVTLEQLASWWSERPAKLAGQ-VSKGA  377 (450)
Q Consensus       309 gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~------~~gls~~~al~~aT~~~A~~lg~-~~~G~  377 (450)
                      |||..+.. ..               .....+ ....+....      ..++|++|+|+|||.|||++||+ +++||
T Consensus       253 GTD~~~~~-~~---------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~e~l~~AT~ngA~aLg~~~~iGS  313 (313)
T d2uz9a2         253 GTDVAGGY-SY---------------SMLDAIRRAVMVSNILLINKVNEKSLTLKEVFRLATLGGSQALGLDGEIGN  313 (313)
T ss_dssp             CCCTTTSC-CC---------------CHHHHHHHHHHHHHHHHHTTSSSSCCCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred             eCCCCCCC-CC---------------CHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcCc
Confidence            99964321 11               111111 111111111      23599999999999999999999 77886

>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: alpha-subunit of urease, catalytic domain
domain: alpha-subunit of urease, catalytic domain
species: Bacillus pasteurii [TaxId: 1474]

Probab=99.68  E-value=8.2e-16  Score=133.31  Aligned_cols=269  Identities=21%  Similarity=0.258  Sum_probs=165.7

Q ss_pred             cceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCC------CCCCcHHHHHHHHHHHhcCCceEEEEecccc
Q 013050           42 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSD------PSTISTETLKLKVDAAEKRIYVDVGFWGGLV  115 (450)
Q Consensus        42 G~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (450)
                      |-||+|+|+-.|.         ....++++|+||++..+.+..      ..+.....+..+++..+ ..++++++.+   
T Consensus         1 GgiDtHvHfi~Pq---------q~~~al~sGiTT~~GgGtGpa~gt~att~tpG~~~i~~ml~a~d-~~P~N~g~~g---   67 (390)
T d4ubpc2           1 GGIDTHVHFINPD---------QVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTE-GLPINVGILG---   67 (390)
T ss_dssp             CEEEEEEECCCTT---------HHHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHT-TCSSEEEEEE---
T ss_pred             CCccccccccCHH---------HHHHHHhcCCeeeecCccCCCCCCCCcccCCCHHHHHHHHHhhh-hCCcceeeee---
Confidence            6799999998764         457889999999998742211      12334556666665554 4588999875   


Q ss_pred             CCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050          116 PENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS  195 (450)
Q Consensus       116 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~  195 (450)
                      ..+....+.+.+.++.|+.++|.+.       .|..++..+..++..|.+++++|.+|.+..+.                
T Consensus        68 kGn~s~~~~l~eqi~aGa~GlKiHE-------DwGatpa~id~~L~vad~~dvqv~iHtDtlNE----------------  124 (390)
T d4ubpc2          68 KGHGSSIAPIMEQIDAGAAGLKIHE-------DWGATPASIDRSLTVADEADVQVAIHSDTLNE----------------  124 (390)
T ss_dssp             ECCCSSHHHHHHHHHHTCCEEEEEG-------GGCCCHHHHHHHHHHHHHHTCEEEEECCTTCS----------------
T ss_pred             ccccCChHHHHHHHHhhhheeeccc-------ccccCHHHHHHHHHHhhccCceEEEecCCccc----------------
Confidence            3445566789999999999999954       45688999999999999999999999976542                


Q ss_pred             cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh--hHHHHHHHHHHhCCCcEEEecCcchhcccccc
Q 013050          196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEE  273 (450)
Q Consensus       196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~  273 (450)
                                   ...++..+....         |..+|..|..-+  --..+.++.+...+  |..+...-..-++.+.
T Consensus       125 -------------~gfve~T~~a~~---------gRtiH~~HtEGaGGGHaPDii~~~g~~n--vLpsSTnPT~Pyt~nt  180 (390)
T d4ubpc2         125 -------------AGFLEDTLRAIN---------GRVIHSFHVEGAGGGHAPDIMAMAGHPN--VLPSSTNPTRPFTVNT  180 (390)
T ss_dssp             -------------SCCHHHHHHHHT---------TCCEEETTTTSTTSSSTTTGGGGGGSTT--EEEBCCSTTSSCBTTH
T ss_pred             -------------ceehhhHHHHhC---------CceeecccCCCCCCCCCchhHHhcCCCc--ccCCCCCCCCCCccCc
Confidence                         112456666655         778888887532  01233444443322  2222111112222111


Q ss_pred             cCCC----CCceEEcCCCCCh------h-hHHHH---HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhh
Q 013050          274 IPDG----DTRFKCAPPIRDA------A-NKEKL---WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF  339 (450)
Q Consensus       274 ~~~~----~~~~~~~~~~~~~------~-~~~~l---~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~  339 (450)
                      +...    -.+.+.+|.+.+-      + ..+-+   .-+.+.|...+++||+...                   ..+..
T Consensus       181 ~~EhldM~MvcHhL~~~ipeDvafAesRiR~eTiaAEdvLHD~GaiSi~sSDsQaM-------------------GRvgE  241 (390)
T d4ubpc2         181 IDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAM-------------------GRAGE  241 (390)
T ss_dssp             HHHHHHHHHHHHTCCTTSHHHHHHHHHHSCHHHHHHHHHHHHTTSSCBCCCCBTTS-------------------SCTTC
T ss_pred             hhhhcCeEEeeccCCCCChhhHHHHhhcccchhhhhHHHhhhcCceeeeccCcccc-------------------cccch
Confidence            1110    1122233332100      0 00111   1234468888999997643                   22223


Q ss_pred             HHHHHHHHHHhc----C-----------CCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEE
Q 013050          340 VLPVTWSYGRKY----G-----------VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVW  389 (450)
Q Consensus       340 ~~~~~~~~~~~~----g-----------ls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~  389 (450)
                      .....|+.+.++    |           ....+.+..+|+|||.+-|+ +.+||||+||.||.+++
T Consensus       242 vi~Rtwq~A~kmk~qrG~l~~d~~~~DN~RvkRYiAKyTINPAIahGish~VGSvE~GKlADG~a~  307 (390)
T d4ubpc2         242 MVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADGDLI  307 (390)
T ss_dssp             HHHHHHHHHHHHHHHHCSCTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCTTHH
T ss_pred             HHHhHHHHHHHHHHhccCCCCccccCCCchhhhcccccccChhHhcCcccccCcccCCcccCCccc
Confidence            333334332211    1           34677788999999999999 89999999999994433

>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Phosphotriesterase-like
domain: Phosphotriesterase (parathion hydrolase, PTE)
species: Pseudomonas diminuta [TaxId: 293]

Probab=99.68  E-value=1.6e-17  Score=153.50  Aligned_cols=283  Identities=15%  Similarity=0.111  Sum_probs=167.1

Q ss_pred             cceeeccccCCCCCC-------cc-------cchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceE
Q 013050           42 GLIDVHAHLDDPGRT-------EW-------EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD  107 (450)
Q Consensus        42 G~iD~H~H~~~~~~~-------~~-------~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (450)
                      ||||+|+|+..+...       .+       +......+.+.++|||+++++. . .+.......+....+.........
T Consensus        16 G~~d~H~Hl~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~a~~~GvttvVd~~-~-~~~~~d~~~l~~~~~~~~~~~~~~   93 (331)
T d1i0da_          16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVS-T-FDIGRDVSLLAEVSRAADVHIVAA   93 (331)
T ss_dssp             CSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECC-C-GGGTCCHHHHHHHHHHHTCEEECE
T ss_pred             CCEeeeeCcccCcccccccCccccccHHHHHHHHHHHHHHHHHcCCCEEEEcC-C-CCCcCCHHHHHHHHHhcCCCEEEE
Confidence            999999999543211       01       2334456678899999999984 2 222334555555555544433444


Q ss_pred             EEEeccccCC-CccchHHHHHHHH----cC-------CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecC
Q 013050          108 VGFWGGLVPE-NAYNASALEALLN----AG-------VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE  175 (450)
Q Consensus       108 ~~~~~~~~~~-~~~~~~~~~~~~~----~g-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~  175 (450)
                      ++++...... .....+.+..+..    .+       ....+.......    .....+.+++.++.+++.|.++.+|.+
T Consensus        94 ~g~h~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~g~pv~~h~~  169 (331)
T d1i0da_          94 TGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATTGKA----TPFQELVLKAAARASLATGVPVTTHTA  169 (331)
T ss_dssp             EECCSCCCHHHHTCCHHHHHHHHHHHHHTCBTTTTBCCSEEEEECSSSC----CHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_pred             EEEecCcCcccCccCHHHHHHHHHHhhhhhhccccCccceeeccccccc----cHHHHHHHHHHHHHHHHhCCeEEeecc
Confidence            4444322111 1122333333321    11       222232221110    112345677788889999999999995


Q ss_pred             ChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCC
Q 013050          176 MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNG  255 (450)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g  255 (450)
                      ....                            +...+.+.+..+..       ...++++.|++.. ...+.+++++..|
T Consensus       170 ~~~~----------------------------~~~~~~~~~~~~~~-------~~~~~~i~H~~~~-~~~~~~~~~~~~g  213 (331)
T d1i0da_         170 ASQR----------------------------DGEQQAAIFESEGL-------SPSRVCIGHSDDT-DDLSYLTALAARG  213 (331)
T ss_dssp             GGGT----------------------------HHHHHHHHHHHTTC-------CGGGEEECSGGGC-CCHHHHHHHHHTT
T ss_pred             chhh----------------------------hhhhhhhhhhhccc-------CCcceEEEecCCc-chHHHHHHHHhcC
Confidence            4321                            12233344444432       2677899999876 8889999999999


Q ss_pred             CcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCe--eEEcCCCCCCChhhhcccCCCccccCCC
Q 013050          256 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI--DMLSSDHSPTVPELKLLDEGNFLKAWGG  333 (450)
Q Consensus       256 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~--~~~gtD~~~~~~~~~~~~~~~~~~~~~g  333 (450)
                      ..+..+.+++++.+........+......++    ...+.+++++..|..  ++++||+.+..+....  .+.....+.|
T Consensus       214 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~l~~g~~d~i~~~tD~p~~~p~~~~--~~~~~~~~~g  287 (331)
T d1i0da_         214 YLIGLDHIPHSAIGLEDNASASALLGIRSWQ----TRALLIKALIDQGYMKQILVSNDWLFGFSSYVT--NIMDVMDRVN  287 (331)
T ss_dssp             CEEEECCTTCCCTTCTTCHHHHHHHCSSCHH----HHHHHHHHHHHTTCGGGEEECCCCCSEECSSST--THHHHHHHHC
T ss_pred             CceeecceeeeccchhhhccccCCccCCChh----hhHHHHHHHHHhcCCCCEEECCCCCCccccccc--CCCccccccC
Confidence            9999999998876654332222212222222    223345566666653  4799998543221110  0011112335


Q ss_pred             CcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          334 ISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      ..++...++..+..+.+.|+|.+++.++.|.||||+|++
T Consensus       288 ~~g~~~~l~~~~~~~~~~gis~e~i~~i~~~NParlf~l  326 (331)
T d1i0da_         288 PDGMAFIPLRVIPFLREKGVPQETLAGITVTNPARFLSP  326 (331)
T ss_dssp             TTGGGHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHHSC
T ss_pred             CCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            667777788888888899999999999999999999999

>d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Guanine deaminase
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.64  E-value=1e-14  Score=133.08  Aligned_cols=164  Identities=14%  Similarity=0.029  Sum_probs=91.1

Q ss_pred             CCCCHHHHHHHHHHHHhcCCcEEEecCChh-hhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCC
Q 013050          149 PMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP  227 (450)
Q Consensus       149 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~  227 (450)
                      ..++++.++++.+.++++++++.+|..+.. .........+             ..+.     ......+...       
T Consensus       139 ~~~~~e~~~~~~~~a~~~~~~~~~H~~E~~~e~~~~~~~~~-------------~~~~-----~~~~~~~~g~-------  193 (310)
T d2i9ua2         139 PSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVKSLHK-------------KSNF-----YGEVYDKFGL-------  193 (310)
T ss_dssp             GGCCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHCT-------------TCSS-----HHHHHHHTTC-------
T ss_pred             CccCHHHHHHHHHHhhccccceeehhccchHHHHHHHHHhc-------------cccc-----HHHHHHhcCC-------
Confidence            457889999999999999999999995432 2221111111             0000     0011111111       


Q ss_pred             CCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeE
Q 013050          228 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDM  307 (450)
Q Consensus       228 ~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~  307 (450)
                      ....++.+.|+..  .+.+.++.+++.|..+..  ||........          ..+         .+.++++.|+.++
T Consensus       194 ~~~~~~~~~H~~~--~~~~~i~~la~~g~~vv~--cP~sn~~l~~----------g~~---------pv~~l~~~Gv~v~  250 (310)
T d2i9ua2         194 FGNTPTLMAHCIH--SSKEEINLIKRNNVTIVH--CPTSNFNLGS----------GMM---------PVRKYLNLGINVV  250 (310)
T ss_dssp             SSSSCEEEEECCS--CCHHHHHHHHHTTCEEEE--CHHHHHHTTC----------CCC---------CHHHHHHTTCEEE
T ss_pred             ccCCceeeeeeee--echhHHHHHHhcCCEEEE--eecccccccC----------Ccc---------cccchhccCceEE
Confidence            1122355567654  233456666667765544  7754322110          011         2456688999999


Q ss_pred             EcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-------hcCCCHHHHHHHHhhchhHHhCCCCCCc
Q 013050          308 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-------KYGVTLEQLASWWSERPAKLAGQVSKGA  377 (450)
Q Consensus       308 ~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~gls~~~al~~aT~~~A~~lg~~~~G~  377 (450)
                      +|||..+.+.. +++              .+..+....+.+.       ...++++|+|+|+|.|||+++|+  +||
T Consensus       251 lGTD~~~~~~~-dm~--------------~~m~~a~~~~~~~~~~~~~~~~~l~~~e~l~~aT~~gA~alGr--iGS  310 (310)
T d2i9ua2         251 LGSDISAGHTC-SLF--------------KVIAYAIQNSKIKWQESGKKDMFLSTSEAFYMATKKGGSFFGK--VGS  310 (310)
T ss_dssp             ECCCBTTBCCS-CHH--------------HHHHHHHHHHHHHHHHTTSCSCCCCHHHHHHHHTHHHHTTTSS--CSS
T ss_pred             EecCCCCCCCC-CHH--------------HHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHhcC--CCC
Confidence            99997654321 111              0111111111111       23589999999999999999995  665

>d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Hypothetical protein TM0936, probable catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=1.6e-15  Score=136.48  Aligned_cols=151  Identities=11%  Similarity=0.054  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCC
Q 013050          150 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE  229 (450)
Q Consensus       150 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  229 (450)
                      .++++.++++.+.|+++|+++.+|+.+...          .           ..|       +..+..+..        -
T Consensus       128 ~~~~~~~~~~~~~A~~~~~~i~iH~~e~~~----------e-----------~~~-------~~~l~~~g~--------l  171 (281)
T d1p1ma2         128 LCSEEYLKRVFDTAKSLNAPVTIHLYETSK----------E-----------EYD-------LEDILNIGL--------K  171 (281)
T ss_dssp             TSCHHHHHHHHHHHHHTTCCEEEEESCSTT----------C-----------CCC-------THHHHTTTT--------T
T ss_pred             hhhhhhhHHHHHHHhccCccccccccCCcc----------c-----------chh-------HHHHHHcCC--------C
Confidence            578999999999999999999999844221          0           001       111111111        1


Q ss_pred             CceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEc
Q 013050          230 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS  309 (450)
Q Consensus       230 ~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~g  309 (450)
                      +.++.+.|+...  +.+.++.+++.|.  ...+||......+..          .         ..+.++++.|+.+++|
T Consensus       172 ~~~~~~~H~~~~--~~~di~~la~~~~--~vv~cP~sn~~lg~~----------~---------~~~~~~~~~Gv~v~LG  228 (281)
T d1p1ma2         172 EVKTIAAHCVHL--PERYFGVLKDIPF--FVSHNPASNLKLGNG----------I---------APVQRMIEHGMKVTLG  228 (281)
T ss_dssp             TSCEEEEECTTC--CGGGTTTTTTSSE--EEEECHHHHHHTTCC----------C---------CCHHHHHHTTCEEEEC
T ss_pred             Cccccccceeee--cHHHHHHHHhcCC--ccccccchhhhhccc----------c---------hhHHHHHhCCCeEEEE
Confidence            556666777642  2224566666664  444588654322111          0         1245678899999999


Q ss_pred             CCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHH-hcCCCHHHHHHHHhhchhHHhCCC
Q 013050          310 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQV  373 (450)
Q Consensus       310 tD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~gls~~~al~~aT~~~A~~lg~~  373 (450)
                      ||+.+++...+++.              +..+...+.... ...++++++++|+|.|||++||++
T Consensus       229 TD~~~s~~~~d~~~--------------em~~a~~~~~~~~~~~~~~~~~l~~aT~~gA~aLGl~  279 (281)
T d1p1ma2         229 TDGAASNNSLNLFF--------------EMRLASLLQKAQNPRNLDVNTCLKMVTYDGAQAMGFK  279 (281)
T ss_dssp             CCCTTTTSCCCHHH--------------HHHHHHHHHHTTCTTSSCHHHHHHHHTHHHHHHHTCS
T ss_pred             CCCCCCCCCcCHHH--------------HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence            99876653322211              111122222222 235999999999999999999993

>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: alpha-subunit of urease, catalytic domain
domain: alpha-subunit of urease, catalytic domain
species: Helicobacter pylori [TaxId: 210]

Probab=99.62  E-value=2.4e-15  Score=130.36  Aligned_cols=262  Identities=22%  Similarity=0.315  Sum_probs=164.2

Q ss_pred             eeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCC------CCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC
Q 013050           44 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNS------DPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE  117 (450)
Q Consensus        44 iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (450)
                      ||+|+|+-.|.         ....++++|+||++..+.+.      ...+.....+..+++..+ ..++++++.+   ..
T Consensus         2 iDtHvHfi~Pq---------q~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~i~~ml~a~d-~~P~N~g~~g---kG   68 (389)
T d1e9yb2           2 IDTHIHFISPQ---------QIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAE-EYSMNLGFLA---KG   68 (389)
T ss_dssp             EEEEEETTCTT---------HHHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHT-TSSSEEEEEE---EC
T ss_pred             ccccccccCHH---------HHHHHHhcCCeEEecCccCCCCCCCccccCCChhHHHHHHHhhh-cCCcceeeee---cc
Confidence            89999998764         46788999999999874221      112333555666665554 4588999875   44


Q ss_pred             CccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccc
Q 013050          118 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS  197 (450)
Q Consensus       118 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~  197 (450)
                      +....+.+.+.++.|+.++|.       ++.|..++..+..++..|.+++++|.+|.+..+.                  
T Consensus        69 n~s~~~~l~eqi~aGa~GlKi-------HEDwGatp~~Id~~L~vad~~dvqv~iHtDtlNE------------------  123 (389)
T d1e9yb2          69 NASNDASLADQIEAGAIGFKI-------HEDWGTTPSAINHALDVADKYDVQVAIHTDTLNE------------------  123 (389)
T ss_dssp             CCSCHHHHHHHHHTTCSEEEE-------CGGGCCCHHHHHHHHHHHHHTTCEEEECCCTTCS------------------
T ss_pred             CCCChHHHHHHHHhccceeec-------cccccCCHHHHHHHHHHHHhhCceEEecCCCccc------------------
Confidence            455567899999999999999       4556789999999999999999999999966442                  


Q ss_pred             cccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhH---HHHHHHHHHhCCCcEEEecCcchhccccccc
Q 013050          198 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS---SLDLLMEAKTNGDSITVETCPHYLAFSAEEI  274 (450)
Q Consensus       198 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~---~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~  274 (450)
                                 ...++..+....         |..+|..|..-+ .   ..+.++.+...+  |..+...-..-++.+.+
T Consensus       124 -----------~Gfve~T~~a~~---------gRtiH~~HtEGa-GGGHAPDii~~~~~~n--vLpsSTnPT~Pyt~nt~  180 (389)
T d1e9yb2         124 -----------AGCVEDTMAAIA---------GRTMHTFHTEGA-GGGHAPDIIKVAGEHN--ILPASTNPTIPFTVNTE  180 (389)
T ss_dssp             -----------SCCHHHHHHHHT---------TCCEEETTTTST-TSCSTTTGGGGGGSTT--EEEEECGGGCSCBTTHH
T ss_pred             -----------ccchhhHHHHhC---------CCcceeeecCCC-CCCCccHHHHHccCCC--ccCCCCCCCCCcccccH
Confidence                       112556666665         778898887643 2   345555554333  22221211222222211


Q ss_pred             CCC----CCceEEcCCCCCh------h-hHHHH---HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhH
Q 013050          275 PDG----DTRFKCAPPIRDA------A-NKEKL---WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV  340 (450)
Q Consensus       275 ~~~----~~~~~~~~~~~~~------~-~~~~l---~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  340 (450)
                      ...    -.+.+..|.+.+-      + ..+-+   .-+.+.|...+++||+...                   ..+...
T Consensus       181 ~EhldMlmvcHhL~~~ipeDvafAesRiR~eTIaAEdvLhD~GaiSi~sSDsqaM-------------------GRvgEv  241 (389)
T d1e9yb2         181 AEHMDMLMVCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSSDSQAM-------------------GRVGEV  241 (389)
T ss_dssp             HHHHHHHHHTTTCCSSCHHHHHHHHHHCCHHHHHHHHHHHHTTSCCEECCCTTSS-------------------CCTTSH
T ss_pred             HHhhchhhhhccCCCCCchhHHHHhhcccchhhhhHHHhhccCceeeeccccccc-------------------chhHHH
Confidence            110    1122233332100      0 00111   1234469999999997643                   222333


Q ss_pred             HHHHHHHHHhc----C-----------CCHHHHHHHHhhchhHHhCC-CCCCccccCCCcc
Q 013050          341 LPVTWSYGRKY----G-----------VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHAD  385 (450)
Q Consensus       341 ~~~~~~~~~~~----g-----------ls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~AD  385 (450)
                      ....|+.+.++    |           ....+.+..+|+|||.+-|+ +.+||||+||.|+
T Consensus       242 i~RtwQtA~kmk~~rG~l~~d~~~~DN~RvkRYiAKYTINPAIahGis~~VGSvE~GK~a~  302 (389)
T d1e9yb2         242 ITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVHH  302 (389)
T ss_dssp             HHHHHHHHHHHHHHHCSCSSCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBGS
T ss_pred             HHHHHHHHHHHHHHhhcCCccCCCcchHHHHhhhhhcccChHHhcCchhccCccccccccc
Confidence            44444443211    1           33677788999999999999 8899999999764

>d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Isoaspartyl dipeptidase, catalytic domain
domain: Isoaspartyl dipeptidase, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.8e-14  Score=129.09  Aligned_cols=269  Identities=15%  Similarity=0.135  Sum_probs=132.3

Q ss_pred             cceeeccccCCCCCC---cccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCCC
Q 013050           42 GLIDVHAHLDDPGRT---EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN  118 (450)
Q Consensus        42 G~iD~H~H~~~~~~~---~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (450)
                      ||||+|+|+..++..   .+++.....+.++++||||+++++ ++.+.....+.+....+.........+...+......
T Consensus         1 GlID~HvHl~~~~~~~~~~~~~~~~~~~~~l~~GvTTv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (284)
T d1onwa2           1 GFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLL-GTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPS   79 (284)
T ss_dssp             CEEEEEECTTCCBCTTSGGGBCCCCCHHHHHHTTEEEEEECC-CSCCSSCCHHHHHHHHHHHHHHTSEEEEEEECSCSSC
T ss_pred             CEEEeccCCCCCCCCcccchhhHHHHHHHHHhCCeEEEecCC-CCCChHhHHHHHHHHHHHHhhcCeeEEEecccccCCc
Confidence            899999999765432   344555568899999999999997 7777777777777776666544444443332222111


Q ss_pred             c---cchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHH------HHHHHHHhcCCcEEEecCChhhhhhhhhhccC
Q 013050          119 A---YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK------EGLSVLARYKRPLLVHAEMEKGSERHVKLEDD  189 (450)
Q Consensus       119 ~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~  189 (450)
                      .   ........... -..+........   .........+.      +........+.++..|......          
T Consensus        80 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  145 (284)
T d1onwa2          80 RTITGSVEKDVAIID-RVIGVKCAISDH---RSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKK----------  145 (284)
T ss_dssp             CCSSSCHHHHHHHCT-TEEEEEEEESST---TSCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEEECSCTT----------
T ss_pred             ccccccchhhhhccc-hhhhhhhhhHHH---HhhccchHHHHhHHHHHHHHhhccccCCceeccccccHH----------
Confidence            1   11222222222 111221111110   00112222222      2233334556677777632211          


Q ss_pred             cCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecC---ChhHHHHHHHHHHhCCCcEEEecCcch
Q 013050          190 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS---DASSSLDLLMEAKTNGDSITVETCPHY  266 (450)
Q Consensus       190 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~---~~~~~~~~~~~~~~~g~~v~~~~~~~~  266 (450)
                                           .++.+.+.++..       +.+++..+..   ...............+..+........
T Consensus       146 ---------------------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (284)
T d1onwa2         146 ---------------------ALQPIYDLLENC-------DVPISKLLPTHVNRNVPLFEQALEFARKGGTIDITSSIDE  197 (284)
T ss_dssp             ---------------------TTHHHHHHHHTC-------CCCGGGEEEECGGGSHHHHHHHHHHHHTTCCEEEETTCCS
T ss_pred             ---------------------HHHHHHHHHHhc-------CCEEEEecccccccccccHHHHHHHHhcCCeehhhccCCC
Confidence                                 124455555543       3332222221   111222222222233333332221110


Q ss_pred             hcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHH
Q 013050          267 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS  346 (450)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  346 (450)
                      .                   .........++........+.++||+.+.....+..    ......+..+....++.+..
T Consensus       198 ~-------------------~~~~~~~~~~~~~~~~~~~~~~~td~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  254 (284)
T d1onwa2         198 P-------------------VAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDE----GNLTHIGVAGFETLLETVQV  254 (284)
T ss_dssp             S-------------------SCHHHHHHHHHHTTCCGGGEEEECCBTCC-----------------CCCCSHHHHHHHHH
T ss_pred             c-------------------cCCHHHHHHHHHhCCCCceEEEEecccccccccccc----ccccCCCCChHHHHHHHHHH
Confidence            0                   001111222233333344568999986654333221    12223345555666666666


Q ss_pred             HHHhcCCCHHHHHHHHhhchhHHhCCCCCC
Q 013050          347 YGRKYGVTLEQLASWWSERPAKLAGQVSKG  376 (450)
Q Consensus       347 ~~~~~gls~~~al~~aT~~~A~~lg~~~~G  376 (450)
                      .+.+.|+|++++++++|.||||+|||+++|
T Consensus       255 ~~~~~gls~~~al~~aT~npAr~lGL~~kG  284 (284)
T d1onwa2         255 LVKDYDFSISDALRPLTSSVAGFLNLTGKG  284 (284)
T ss_dssp             HHHHHCCCHHHHHGGGTHHHHHHTTCTTCS
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence            677889999999999999999999996676

>d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Hypothetical protein GOS 1943094
species: Environmental samples

Probab=99.61  E-value=3.2e-15  Score=138.13  Aligned_cols=163  Identities=13%  Similarity=0.157  Sum_probs=83.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCC
Q 013050          150 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE  229 (450)
Q Consensus       150 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  229 (450)
                      ..+.+.++...+.+++.+.++..|.............             .....      .+........        .
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~-------------~~~~~------~~~~~~~~~~--------~  208 (336)
T d2paja2         156 SISPREMRETAAVARRLGLRMHSHLSETVGYQDSAYS-------------MYGKS------PVAFCGEHDW--------L  208 (336)
T ss_dssp             SSCHHHHHHHHHHHHHTTCEEEEECC--------------------------CCC------HHHHHHHTTC--------C
T ss_pred             ccCHHHHHHHHhhhhccCCceeeeccccchhhHHHHH-------------hcCCc------cccccccccc--------c
Confidence            4678999999999999999999998543321110000             00001      0111222211        1


Q ss_pred             CceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEc
Q 013050          230 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS  309 (450)
Q Consensus       230 ~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~g  309 (450)
                      +......|+..  ...+.++.++..+..+..  ||.......          ...++++         ++++.|+.+++|
T Consensus       209 ~~~~~~~h~~~--~~~~~~~~l~~~~~~~~~--~p~~~~~~~----------~~~~~~~---------~l~~~Gv~valG  265 (336)
T d2paja2         209 GSDVWYAHLVK--VDADEIALLAQTGTGVAH--CPQSNGRLG----------SGICPVR---------EMADAGVPVSIG  265 (336)
T ss_dssp             STTEEEESCCS--CCHHHHHHHHHHTCEEEE--CHHHHHCC---------------CCT---------THHHHTCCEEEC
T ss_pred             cccccccccee--cchHHHHHHhhcccccee--ccchhhccC----------ccccchh---------hHHhcCCeEEEE
Confidence            45566677765  333344444555654444  665432211          1122333         346779999999


Q ss_pred             CCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHH-----------------HHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          310 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-----------------YGRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       310 tD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------------~~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      ||+.+++...+++.              +..+..++.                 .....++|++|+|+++|+|||++||+
T Consensus       266 TD~~~s~~~~d~~~--------------emr~a~~~~r~~~~~~~~~~~~~~~~~~~~~~~t~~eal~~aT~~gA~aLgl  331 (336)
T d2paja2         266 VDGAASNEAADMIS--------------EVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGARVMGL  331 (336)
T ss_dssp             CCHHHHCSCCSHHH--------------HHHHHHHHHHHTC-------------------CCHHHHHHHHTHHHHHHHTC
T ss_pred             cCCCCCCCcccHHH--------------HHHHHHHHHHHhhccccccccccccccCCCCCCCHHHHHHHHHHHHHHHhCc
Confidence            99643322211110              111111111                 12245699999999999999999999


Q ss_pred             CCCC
Q 013050          373 VSKG  376 (450)
Q Consensus       373 ~~~G  376 (450)
                      +++|
T Consensus       332 d~iG  335 (336)
T d2paja2         332 DEVG  335 (336)
T ss_dssp             TTSS
T ss_pred             cccC
Confidence            6565

>d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Imidazolonepropionase
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.55  E-value=4.2e-14  Score=127.56  Aligned_cols=63  Identities=21%  Similarity=0.216  Sum_probs=45.8

Q ss_pred             HHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC-C
Q 013050          296 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ-V  373 (450)
Q Consensus       296 l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~-~  373 (450)
                      +..+++.|+.+++|||+.+....                  .. .+...+.. ....|||+.|||+|+|.|||++||+ +
T Consensus       237 ~~~~~~~Gv~v~lGTD~~~~~~~------------------~~-~l~~~~~~~~~~~gl~~~eal~~aT~~~A~~LGl~~  297 (301)
T d2puza2         237 VQALRDAGAEIALATDCNPGTSP------------------LT-SLLLTMNMGATLFRMTVEECLTATTRNAAKALGLLA  297 (301)
T ss_dssp             HHHHHHHTCCEEECCCCCSSSCC------------------BC-CHHHHHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTT
T ss_pred             HHHHHHCCCeEEEEeCCCCCCCc------------------cc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCc
Confidence            45677889999999996432110                  01 12333333 3568999999999999999999999 7


Q ss_pred             CCCc
Q 013050          374 SKGA  377 (450)
Q Consensus       374 ~~G~  377 (450)
                      ++||
T Consensus       298 ~~GS  301 (301)
T d2puza2         298 ETGT  301 (301)
T ss_dssp             TSSS
T ss_pred             CcCc
Confidence            7886

>d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Imidazolonepropionase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.51  E-value=2e-13  Score=123.09  Aligned_cols=63  Identities=16%  Similarity=0.121  Sum_probs=45.6

Q ss_pred             HHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC-C
Q 013050          296 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ-V  373 (450)
Q Consensus       296 l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~-~  373 (450)
                      +.++++.|+.+++|||+.+....              +     ..+...+.. ....|||+.++|+++|+|||++||+ +
T Consensus       236 ~~~l~~~Gv~v~lgTD~~~~~~~--------------~-----~~l~~~~~~a~~~~gl~~~eal~~aT~~~A~~lG~~~  296 (300)
T d2bb0a2         236 ARAMIDEGVCVSLATDFNPGSSP--------------T-----ENIQLIMSIAALHLKMTAEEIWHAVTVNAAYAIGKGE  296 (300)
T ss_dssp             HHHHHHTTCCEEECCCBBTTTBC--------------C-----CCHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHTTCTT
T ss_pred             HHHHHHCCCEEEEEeCCCCCCCc--------------h-----hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcch
Confidence            35678899999999996432110              0     012222333 4578999999999999999999999 7


Q ss_pred             CCCc
Q 013050          374 SKGA  377 (450)
Q Consensus       374 ~~G~  377 (450)
                      ++|+
T Consensus       297 ~~G~  300 (300)
T d2bb0a2         297 EAGQ  300 (300)
T ss_dssp             TSSC
T ss_pred             hhCc
Confidence            7885

>d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: DR0824-like
domain: Hypothetical protein DR0824
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.49  E-value=2.2e-13  Score=123.74  Aligned_cols=58  Identities=12%  Similarity=0.014  Sum_probs=38.5

Q ss_pred             HHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH--HHhcCCCHHHHHHHHhhchhHHhCCC
Q 013050          296 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY--GRKYGVTLEQLASWWSERPAKLAGQV  373 (450)
Q Consensus       296 l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~gls~~~al~~aT~~~A~~lg~~  373 (450)
                      +.++.+.|+.+++|||+.+.+....                    +...++.  ....|++++|+|+++|.|||++||++
T Consensus       247 ~~~l~~aGv~valGTD~~~~~~~~~--------------------~~~e~~~a~~~~~g~tp~e~l~~aT~~gA~~LGl~  306 (308)
T d2imra2         247 WPAFAAAGVEVALGTDSVASGETLN--------------------VREEVTFARQLYPGLDPRVLVRAAVKGGQRVVGGR  306 (308)
T ss_dssp             HHHHHHTTCCEEECCCCHHHHSCSC--------------------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHCCCcEEEECCCCCCCCchh--------------------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCC
Confidence            3566789999999999532211110                    1111122  23458999999999999999999984

>d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421
species: Environmental samples

Probab=99.47  E-value=4.1e-13  Score=120.22  Aligned_cols=63  Identities=17%  Similarity=0.132  Sum_probs=45.2

Q ss_pred             HHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHHHHHHHHhhchhHHhCC-C
Q 013050          296 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ-V  373 (450)
Q Consensus       296 l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~~al~~aT~~~A~~lg~-~  373 (450)
                      +.++++.|+.+++|||..+....              +    . .+...+.. +...|||++|+|+++|.|||++||+ +
T Consensus       237 ~~~l~~aGv~v~lGTD~~~~~~~--------------~----~-~l~~~~~~~~~~~glt~~eal~~aT~~~A~~lG~~~  297 (301)
T d2q09a2         237 VVALRKAGVPMAVSSDINPGTAP--------------I----V-SLRMAMNMACTLFGLTPVEAMAGVTRHAARALGEQE  297 (301)
T ss_dssp             HHHHHHTTCCEEECCCCBTTTBC--------------C----C-CHHHHHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTT
T ss_pred             HHHHHHCCCeEEEEeCCCCCCCC--------------c----c-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCccc
Confidence            45668889999999996543110              0    0 12222333 3577999999999999999999999 7


Q ss_pred             CCCc
Q 013050          374 SKGA  377 (450)
Q Consensus       374 ~~G~  377 (450)
                      ++|+
T Consensus       298 ~iG~  301 (301)
T d2q09a2         298 QLGQ  301 (301)
T ss_dssp             TSSS
T ss_pred             ccCc
Confidence            6774

>d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: D-aminoacylase, catalytic domain
domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain
species: Alcaligenes faecalis [TaxId: 511]

Probab=99.45  E-value=1.2e-12  Score=120.51  Aligned_cols=277  Identities=18%  Similarity=0.178  Sum_probs=158.7

Q ss_pred             cceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCC------------------CCCcHHHHHHHHHHHhc-
Q 013050           42 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDP------------------STISTETLKLKVDAAEK-  102 (450)
Q Consensus        42 G~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~-  102 (450)
                      ||||+|+|.....+     ........+.+||||++...++...                  ....++.+..+.+.++. 
T Consensus         1 GFID~HtH~D~~~~-----~~p~~~~~~~~GVTT~v~GncG~s~aP~~~~~~~~~~~~l~~g~~~~w~t~~eyl~~le~~   75 (358)
T d1m7ja3           1 GFIDSHTHDDNYLL-----KHRDMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAA   75 (358)
T ss_dssp             CEEESSCCCTTHHH-----HCTTCHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHHHS
T ss_pred             CceecCCCCchhhc-----cCCCCcccccCCCceEEEeCCCCCcccCCcccccchHHHhccCCCcCcCCHHHHHHHHHhc
Confidence            89999999763210     0012245588999999876433211                  11223345555666543 


Q ss_pred             CCceEEEEecc---cc---------CCCccchHHH----HHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhc
Q 013050          103 RIYVDVGFWGG---LV---------PENAYNASAL----EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY  166 (450)
Q Consensus       103 ~~~~~~~~~~~---~~---------~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~  166 (450)
                      ...+++....+   +.         ..+.++++.+    ++.+++|+.|+.....|...   ...+.+++.++.+.+.++
T Consensus        76 ~~~~Nva~~vgH~~lR~~vmg~~~~~at~~ei~~M~~ll~eal~~GA~G~Stgl~y~P~---~~A~~~El~~lak~~~~~  152 (358)
T d1m7ja3          76 PPAVNAACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIGISTGAFYPPA---AHASTEEIIEVCRPLITH  152 (358)
T ss_dssp             CCSSEEEEEEEHHHHHHHHCSCCSSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSGGG---TTCCHHHHHHHHTHHHHH
T ss_pred             CCccceeeecccccccccccCcccccCCHHHHHHHHHHHHHHHhcCCcccccCCccccc---ccCCHHHHHHHHHHHHhc
Confidence            34466665333   11         1122334444    44456899999886544210   246889999999999999


Q ss_pred             CCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh-----
Q 013050          167 KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-----  241 (450)
Q Consensus       167 g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~-----  241 (450)
                      |..+..|.+....                           ...+.+++++++++++       +.++++.|+...     
T Consensus       153 g~~~~~h~r~~~~---------------------------~~~~~~~e~~~~a~~~-------g~~~~ish~~~~~~~~~  198 (358)
T d1m7ja3         153 GGVYATHMRDEGE---------------------------HIVQALEETFRIGREL-------DVPVVISHHKVMGKLNF  198 (358)
T ss_dssp             TCEEEEECSCSST---------------------------THHHHHHHHHHHHHHH-------TSCEEECSCCCCSGGGT
T ss_pred             CCeeeeeeccccc---------------------------cHHHHHHHHHHHHHHc-------CCceEecccccCCCcch
Confidence            9999999965321                           1245688999999988       999999998531     


Q ss_pred             ---hHHHHHHHHHHhCCCcEEEecCcchhcccccc---c-CCCCCceEEcCC---CCCh---------------------
Q 013050          242 ---SSSLDLLMEAKTNGDSITVETCPHYLAFSAEE---I-PDGDTRFKCAPP---IRDA---------------------  290 (450)
Q Consensus       242 ---~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~---~~~~---------------------  290 (450)
                         ...++.++.+ +.|..++.+.+|+....+...   + ..........++   +...                     
T Consensus       199 ~~~~~~~~~~~~a-~~G~~i~~d~yPy~ag~t~l~~~~~~~~~~~~~~~~~~~~~~~G~~l~eiA~~~g~~p~d~~~dl~  277 (358)
T d1m7ja3         199 GRSKETLALIEAA-MASQDVSLDAYPYVAGSTMLKQDRVLLAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQ  277 (358)
T ss_dssp             TTHHHHHHHHHHH-HHHSCEEEEECSCSCEEEECCCCTTTTSSCEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHC
T ss_pred             hhHHHHHHHHHHH-hcCCCcceeecCccccccccchhhhhhccchhhhccccChhhccCcHHHHHHHcCCCHHHHHHHHh
Confidence               1233444443 357789999888744333211   1 111111222221   1000                     


Q ss_pred             --------hhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHH-HHHHhcC-CCHHHHHH
Q 013050          291 --------ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW-SYGRKYG-VTLEQLAS  360 (450)
Q Consensus       291 --------~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~g-ls~~~al~  360 (450)
                              ...+.+.+++. ....++|||+.+....              ........++.++ +++++.+ ||+++|++
T Consensus       278 ~~~~~~~~~~e~~v~~~l~-~p~~~igSDgga~~~~--------------~hpr~~gtf~r~L~~~vRe~~~lsLeeAI~  342 (358)
T d1m7ja3         278 PAGAIYFMMDEPDVQRILA-FGPTMIGSDGLPHDER--------------PHPRLWGTFPRVLGHYSRDLGLFPLETAVW  342 (358)
T ss_dssp             SEEEEECCCCHHHHHHHHH-STTEEECCCCCTTCSS--------------CCTHHHHHHHHHHCCCCCCTCSSCHHHHHH
T ss_pred             hccchhhcCCHHHHHHHHh-CCCceEEcCcccCCCC--------------cCCCCcccHHHHHHHHhcCCCcCCHHHHHH
Confidence                    01122233333 2345678887543210              0111111223333 3355555 89999999


Q ss_pred             HHhhchhHHhCCCCCC
Q 013050          361 WWSERPAKLAGQVSKG  376 (450)
Q Consensus       361 ~aT~~~A~~lg~~~~G  376 (450)
                      ..|..||+.||++++|
T Consensus       343 k~T~~pA~~~Gl~dRG  358 (358)
T d1m7ja3         343 KMTGLTAAKFGLAERG  358 (358)
T ss_dssp             TTTHHHHHHHTCTTCS
T ss_pred             HHHHHHHHHhCCCCCC
Confidence            9999999999996666

>d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Uncharacterized protein BL1453
species: Bifidobacterium longum [TaxId: 216816]

Probab=99.40  E-value=2.1e-12  Score=116.37  Aligned_cols=65  Identities=12%  Similarity=0.025  Sum_probs=46.8

Q ss_pred             HHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHHHHHHHHhhchhHHhCC
Q 013050          294 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       294 ~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      ..+.++.+.|+.+++|||......                 .+  ..+...+.++ +..|||+.|+|+++|+|||++||+
T Consensus       258 ~~~~~~~~~Gv~v~~GtD~~~~~~-----------------~~--~~l~~el~~~~~~~Gls~~eaL~~aT~n~A~~lgl  318 (324)
T d2p9ba2         258 SGARQAHEAGLMIGVGTDTGMTFV-----------------PQ--YATWRELELLVAYAGFSPAEALHAATAVNASILGV  318 (324)
T ss_dssp             HHHHHHHHTTCCBCCCCCTTSTTS-----------------CT--TCHHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTC
T ss_pred             HHHHHHHHcCCeEEEEeCCCCCcC-----------------hh--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC
Confidence            445677889999999999532210                 00  0122333444 457999999999999999999999


Q ss_pred             -CCCCc
Q 013050          373 -VSKGA  377 (450)
Q Consensus       373 -~~~G~  377 (450)
                       +++||
T Consensus       319 ~d~~GS  324 (324)
T d2p9ba2         319 DAETGS  324 (324)
T ss_dssp             TTTSSS
T ss_pred             CcCcCc
Confidence             88886

>d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Dihydropyrimidinase related protein-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=1.5e-13  Score=106.96  Aligned_cols=84  Identities=24%  Similarity=0.386  Sum_probs=77.1

Q ss_pred             hchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-
Q 013050          364 ERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-  441 (450)
Q Consensus       364 ~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-  441 (450)
                      .++|+.++. ...+.|.+|..|||+|+|++..+++..+ ++.+... ++||+|..+.++|.+||++|++||++|+++++ 
T Consensus        38 ~~~a~vIDa~G~~v~~~~G~dAdl~i~Dp~~~~~i~~~-~~~sk~~-~tpf~G~~~~G~v~~Ti~rG~~v~~~g~~~~~~  115 (142)
T d1kcxa1          38 PGGVKTIEANGRMVIIAVGSDADVVIWDPDKMKTITAK-SHKSTVE-YNIFEGMECHGSPLVVISQGKIVFEDGNISVSK  115 (142)
T ss_dssp             CSSCEEEECTTCEEECCTTSBCCEEEEEEEEEEECCTT-TCSSSSS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCT
T ss_pred             CccceeechhhcceeecccccceEEEEeccceEEEcch-hccccCC-ccCCcCCEEEEEEEEEEECCEEEEECCEEeEcC
Confidence            356788888 6789999999999999999999999998 9999999 99999999999999999999999999999966 


Q ss_pred             CCCccccc
Q 013050          442 ACGSPILA  449 (450)
Q Consensus       442 ~~g~~~~~  449 (450)
                      ..|+||++
T Consensus       116 g~G~fl~r  123 (142)
T d1kcxa1         116 GMGRFIPR  123 (142)
T ss_dssp             TCCCBCCC
T ss_pred             CCCeEecC
Confidence            58999975

>d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Xaa-Pro dipeptidase
species: Alteromonas macleodii [TaxId: 28108]

Probab=99.39  E-value=4.3e-12  Score=113.91  Aligned_cols=63  Identities=14%  Similarity=0.024  Sum_probs=46.9

Q ss_pred             HHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          293 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       293 ~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      ...+..+.+.|+.+++|||+...+ ..                    .+...+.++.+.|||+.|+|+++|+|||++||+
T Consensus       247 ~~~~~~l~~~Gv~v~lGTD~~~~~-~~--------------------~~~~el~~~~~~Gls~~eaL~~aT~~~A~~LGl  305 (310)
T d2qs8a2         247 SDTFRKAYEKGVKIAFGTDAGVQK-HG--------------------TNWKEFVYMVENGMPAMKAIQSATMETAKLLRI  305 (310)
T ss_dssp             HHHHHHHHHHTCCBCCCCCBTTBC-TT--------------------CTTHHHHHHHHTTCCHHHHHHHTTHHHHHHTTC
T ss_pred             hHHHHHHHHCCCeEEEecCCCCCC-cc--------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCc
Confidence            344677888999999999963221 11                    012233456788999999999999999999999


Q ss_pred             -CCCC
Q 013050          373 -VSKG  376 (450)
Q Consensus       373 -~~~G  376 (450)
                       +++|
T Consensus       306 ~d~iG  310 (310)
T d2qs8a2         306 EDKLG  310 (310)
T ss_dssp             TTTSS
T ss_pred             CCCcC
Confidence             7676

>d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Adenine deaminase-like
domain: Putative adenine deaminase EF0837
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.39  E-value=6.1e-13  Score=116.60  Aligned_cols=36  Identities=22%  Similarity=0.173  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHhhchhHHhCCCCCC
Q 013050          341 LPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKG  376 (450)
Q Consensus       341 ~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~~~~G  376 (450)
                      +...+.++.+.|||+.|+|+++|.|||++||++++|
T Consensus       232 l~~~l~~~~~~Gls~~eal~~aT~npA~~lgl~drG  267 (267)
T d2icsa2         232 LATTMEKLRVVGYDWPEIIEKVTKAPAENFHLTQKG  267 (267)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHTTTHHHHHHTTCTTSS
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence            445556667789999999999999999999996676

>d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Uncharacterized protein EAJ56179
species: Unidentified organism [TaxId: 32644]

Probab=99.38  E-value=8.1e-12  Score=112.23  Aligned_cols=64  Identities=9%  Similarity=-0.087  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHh
Q 013050          291 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLA  370 (450)
Q Consensus       291 ~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~l  370 (450)
                      .....+..+.+.|+.+++|||....+ ...                    +...+..+. .|+|+.|+|+|+|+|||++|
T Consensus       247 ~~~~~~~~l~~aGv~v~~GTD~~~~~-~~~--------------------~~~el~~~~-~gls~~eaL~~ATi~~A~aL  304 (311)
T d2r8ca2         247 AGLHSIEIMKRAGVKMGFGTDLLGEA-QRL--------------------QSDEFRILA-EVLSPAEVIASATIVSAEVL  304 (311)
T ss_dssp             GHHHHHHHHHHTTCEECCCCCCCGGG-GGG--------------------TTHHHHHHT-TTSCHHHHHHHTTHHHHHHT
T ss_pred             hhhHHHHHHHHCCCeEEEEeCCCCCc-hHH--------------------HHHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence            44566778889999999999953221 110                    111222233 48999999999999999999


Q ss_pred             CC-CCCC
Q 013050          371 GQ-VSKG  376 (450)
Q Consensus       371 g~-~~~G  376 (450)
                      |+ +++|
T Consensus       305 g~~d~iG  311 (311)
T d2r8ca2         305 GMQDKLG  311 (311)
T ss_dssp             TCTTTSS
T ss_pred             CCCcCCC
Confidence            99 6676

>d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Zn-dependent arginine carboxypeptidase
species: Unidentified organism [TaxId: 32644]

Probab=99.38  E-value=8.5e-12  Score=111.50  Aligned_cols=63  Identities=19%  Similarity=0.155  Sum_probs=46.5

Q ss_pred             HHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC
Q 013050          293 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       293 ~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~  372 (450)
                      ...+.++.+.|+.+++|||+...+. .               .     +...+.++.+.|||+.|||+++|+|||++||+
T Consensus       241 ~~~~~~l~~aGv~v~lGTD~~~~~~-~---------------~-----~~~el~~~~~~Gls~~eaL~~aT~n~A~~lGl  299 (303)
T d3be7a2         241 RENFMNAHRRGAIITFGTDAGIFDH-G---------------D-----NAKQFAYMVEWGMTPLEAIQASTIKTATLFGI  299 (303)
T ss_dssp             HHHHHHHHHHTCCEECCCCBTTBCT-T---------------C-----GGGHHHHHHHTTCCHHHHHHTTTHHHHHHHTC
T ss_pred             HHHHHHHHHCCCeEEEEeCCCCccc-H---------------H-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence            3455677888999999999632211 0               0     11123456788999999999999999999999


Q ss_pred             CCCC
Q 013050          373 VSKG  376 (450)
Q Consensus       373 ~~~G  376 (450)
                      +++|
T Consensus       300 ~D~G  303 (303)
T d3be7a2         300 ENIG  303 (303)
T ss_dssp             SSCS
T ss_pred             cccC
Confidence            7676

>d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.36  E-value=3.7e-13  Score=105.68  Aligned_cols=84  Identities=20%  Similarity=0.400  Sum_probs=77.5

Q ss_pred             hchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-
Q 013050          364 ERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-  441 (450)
Q Consensus       364 ~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-  441 (450)
                      .++|+.++. ++.+.|.+|..|||+++|++..+++..+ ++.+... ++||+|..+.++|.+||++|++||++|+++++ 
T Consensus        39 ~~~~~iida~gk~v~i~~G~dad~~i~dp~~~~~i~~~-~~~sk~~-~spfeG~~~~G~v~~TivrG~iV~~~g~~~~~~  116 (150)
T d2ftwa1          39 KEGIKVVDATDKLLLIDVGCDGDIVIWDPNQSKTISKD-THHHAVD-FNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVK  116 (150)
T ss_dssp             CSSCCEEECTTCEEECSTTSBCCEEEEEEEEEEECCTT-TCCCSSS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCT
T ss_pred             CCccEEEecccceeeeecCccCceEEEecCceEEEecc-ccccccc-cccCcCCEEEEEEeEEEECCEEEEECCEEeecC
Confidence            467888888 7789999999999999999999999988 8999998 99999999999999999999999999999966 


Q ss_pred             CCCccccc
Q 013050          442 ACGSPILA  449 (450)
Q Consensus       442 ~~g~~~~~  449 (450)
                      ..|+||++
T Consensus       117 g~Grfl~R  124 (150)
T d2ftwa1         117 GSGRFVPR  124 (150)
T ss_dssp             TCCCBCCC
T ss_pred             CCceEccC
Confidence            68999975

>d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Guanine deaminase
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.34  E-value=1e-11  Score=113.02  Aligned_cols=30  Identities=7%  Similarity=-0.279  Sum_probs=27.6

Q ss_pred             HHhcCCCHHHHHHHHhhchhHHhCC-CCCCc
Q 013050          348 GRKYGVTLEQLASWWSERPAKLAGQ-VSKGA  377 (450)
Q Consensus       348 ~~~~gls~~~al~~aT~~~A~~lg~-~~~G~  377 (450)
                      ..+.+||+.|+|++||.|||++||+ +++||
T Consensus       295 ~~~~gl~~~eal~~AT~ngA~aLG~~d~iGS  325 (325)
T d2ooda2         295 AERNKLSPYRGFWSVTLGGAEGLYIDDKLGN  325 (325)
T ss_dssp             HHHTCCCHHHHHHHTTHHHHHHTTCTTTSSS
T ss_pred             cccCCCCHHHHHHHHHHHHHHHhCCCcccCc
Confidence            4578999999999999999999999 88887

>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: alpha-subunit of urease, catalytic domain
domain: alpha-subunit of urease, catalytic domain
species: Klebsiella aerogenes [TaxId: 28451]

Probab=99.28  E-value=1.3e-10  Score=100.67  Aligned_cols=256  Identities=21%  Similarity=0.265  Sum_probs=152.6

Q ss_pred             eeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCC------CCCCcHHHHHHHHHHHhcCCceEEEEeccccCC
Q 013050           44 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSD------PSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE  117 (450)
Q Consensus        44 iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (450)
                      ||+|+|+-.|.         ...+++++|+||++..+.+..      ........+..+++..+ ..++++++.+   ..
T Consensus         2 iDtHvHfi~Pq---------q~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~~~~ml~a~d-~~P~N~g~~g---kG   68 (385)
T d1ejxc2           2 IDTHIHWICPQ---------QAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAAD-SLPVNIGLLG---KG   68 (385)
T ss_dssp             EEEEEECSCTT---------HHHHHHHTTEEEEEEECCSSSHHHHHSSCCCHHHHHHHHHHHHT-TSSSEEEEEE---EC
T ss_pred             ccccccccCHH---------HHHHHHhcCCeeeecCccCCCCCCCCcCcCCCHHHHHHHHHhhh-hCCcceeeee---cc
Confidence            89999998764         467889999999998742211      12333556666666554 4588999875   44


Q ss_pred             CccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccc
Q 013050          118 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS  197 (450)
Q Consensus       118 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~  197 (450)
                      +....+.+.+.++.|+.++|.+.       .|..++..+..++..|++++++|.+|.+..+.                  
T Consensus        69 n~s~~~~l~eqi~AGa~GlKiHE-------DwGatpa~id~~L~vad~~dvqv~iHtDtlNE------------------  123 (385)
T d1ejxc2          69 NVSQPDALREQVAAGVIGLKIHE-------DWGATPAAIDCALTVADEMDIQVALHSDTLNE------------------  123 (385)
T ss_dssp             CCSSHHHHHHHHHHTCSEEEEEG-------GGCCCHHHHHHHHHHHHHHTCEEEEECCTTCS------------------
T ss_pred             ccCChHHHHHHHHhhhceecCCc-------ccccChHHHHHHHHhHhhcCceEEEecccccc------------------
Confidence            55556789999999999999954       45688999999999999999999999976442                  


Q ss_pred             cccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCCh--hHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050          198 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP  275 (450)
Q Consensus       198 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~  275 (450)
                                 ...++..+....         |..+|..|..-+  --..+.++.+...++.. .+..| ..-++.+.+.
T Consensus       124 -----------~gfvedT~~a~~---------gRtiH~~H~EGaGGGHAPDii~~~~~~nvlp-sSTnP-T~P~t~nt~~  181 (385)
T d1ejxc2         124 -----------SGFVEDTLAAIG---------GRTIHTFHTEGAGGGHAPDIITACAHPNILP-SSTNP-TLPYTLNTID  181 (385)
T ss_dssp             -----------SCCHHHHHHHHT---------TCCEEESSTTSTTSSSTTTGGGGGGCTTEEE-EEEST-TSSCBTTHHH
T ss_pred             -----------cccchhhHHHhC---------CCceeeeecccCCCCccchhhHhhccCcccC-CCCCC-CCCCccCchH
Confidence                       112455666655         778998887642  01244555543333211 11122 1222221111


Q ss_pred             C----CCCceEEcCCCCCh------hh-HHHH---HHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHH
Q 013050          276 D----GDTRFKCAPPIRDA------AN-KEKL---WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL  341 (450)
Q Consensus       276 ~----~~~~~~~~~~~~~~------~~-~~~l---~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  341 (450)
                      .    .-.+.+.+|.+.+-      +- .+-+   .-..+.|...+++||+...                   ..+....
T Consensus       182 EhldMlmvcHhL~~~ipeDvafAesRiR~eTiaAEdvLhD~GaiSi~sSDsQaM-------------------GRvGEvi  242 (385)
T d1ejxc2         182 EHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDSQAM-------------------GRVGEVI  242 (385)
T ss_dssp             HHHHHHHHC----------CHHHHHHSCHHHHHHHHHHHHTTSSCEEECCTTSS-------------------SCTTCHH
T ss_pred             hhCCceeecccCCCCChhHHhhhhccccchhhhhHHHhhccCceeeeccccccc-------------------CcCCcch
Confidence            1    11223344433210      00 1111   1234469999999997643                   2222333


Q ss_pred             HHHHHHHHhc----C-----------CCHHHHHHHHhhchhHHhCC-CCCCcc
Q 013050          342 PVTWSYGRKY----G-----------VTLEQLASWWSERPAKLAGQ-VSKGAI  378 (450)
Q Consensus       342 ~~~~~~~~~~----g-----------ls~~~al~~aT~~~A~~lg~-~~~G~I  378 (450)
                      ...|+.+.++    |           ....+.+..+|+|||.+-|+ +.+|.+
T Consensus       243 ~RtwqtA~kmk~~rG~l~~d~~~~DN~RvkRYIAKYTINPAIahGIsh~VGMF  295 (385)
T d1ejxc2         243 LRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEVGMF  295 (385)
T ss_dssp             HHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHHHHTHHHHHHTTCTTTSSCG
T ss_pred             hhhHHHHHHHHHhhccCCCCCCCCcchHHHhhhhhhccChHHHcCccceeccc
Confidence            3334332211    1           34677899999999999999 777754

>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: D-aminoacylase
domain: N-acyl-D-aminoacid amidohydrolase
species: Alcaligenes faecalis [TaxId: 511]

Probab=99.28  E-value=4.4e-12  Score=83.08  Aligned_cols=61  Identities=20%  Similarity=0.376  Sum_probs=46.5

Q ss_pred             ccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCCCCCccccc
Q 013050          377 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA  449 (450)
Q Consensus       377 ~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~g~~~~~  449 (450)
                      .|++|++|||+|||++.-.+     +..+...       ......|.+|||||+++|++|+++++..|++||+
T Consensus         1 ri~~G~~ADlvvfDp~~i~d-----~~~~~~~-------~~~~~Gi~~v~VnG~~v~~~g~~~~~~~G~~lrR   61 (61)
T d1m7ja2           1 QVQPGYYADLVVFDPATVAD-----SATFEHP-------TERAAGIHSVYVNGAAVWEDQSFTGQHAGRVLNR   61 (61)
T ss_dssp             SCCTTSBCCEEEECTTTCBC-----CCCSSST-------TCCCBSEEEEEETTEEEEETTEECSCCCCCBCCC
T ss_pred             CCCCCcCCCEEEECHHHccC-----ccccccc-------ccccceeEEEEECCEEEEECCEECCCCCCEEeeC
Confidence            48999999999999874221     1112111       2233569999999999999999999999999985

>d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: N-acetylglucosamine-6-phosphate deacetylase, NagA
domain: N-acetylglucosamine-6-phosphate deacetylase, NagA
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=1.4e-12  Score=92.40  Aligned_cols=48  Identities=21%  Similarity=0.183  Sum_probs=42.1

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD   52 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~   52 (450)
                      .+++|+|++|+|.+|++..+.+   ++.+++|++|++|+|||||+|+|...
T Consensus        17 ~~~~i~i~~g~I~~Ig~~~~~p---~~~~viDl~G~~l~PGlid~hvH~~~   64 (85)
T d1yrra1          17 DDHAVVIADGLIKSVCPVAELP---PEIEQRSLNGAILSPTLAAGKVANLT   64 (85)
T ss_dssp             SSEEEEEETTEEEEEEEGGGSC---TTCCEEECTTCEEEESCCTTSBCCEE
T ss_pred             eccEEEEeccEEEEEccccccc---ceeEEEecCCcEEEcccEecceeecc
Confidence            4678999999999999876654   47899999999999999999999743

>d2bb0a1 b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Imidazolonepropionase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.25  E-value=7.2e-14  Score=105.64  Aligned_cols=66  Identities=18%  Similarity=0.213  Sum_probs=54.7

Q ss_pred             CCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeE
Q 013050          353 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNL  431 (450)
Q Consensus       353 ls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~  431 (450)
                      +++.++++++|.+||+++++ +++|+|++||.|||+|||.+++..+              ||.  .....|.+||++|++
T Consensus        46 l~~~~al~~aT~~~A~~l~~~~~~g~l~~g~~ad~~~~~~~~~~~~--------------~y~--~~~~~v~~vi~~G~i  109 (113)
T d2bb0a1          46 VFAGQKGAEAGYEADEIIDCSGRLVTLKAGRSADLVIWQAPNYMYI--------------PYH--YGVNHVHQVMKNGTI  109 (113)
T ss_dssp             EEEEETTTTTTCEEEEEEECTTCEEECSTTSBCCEEEESSSSTTHH--------------HHS--CSSCCEEEEEETTEE
T ss_pred             cCHHHHHHHHHHHHHHHhCCcCcEEEEcCCCcccEEEecCCchhhc--------------hhh--cCCCChhEEEECCEE
Confidence            77889999999999999999 8899999999999999998864433              211  011369999999999


Q ss_pred             EEe
Q 013050          432 VYK  434 (450)
Q Consensus       432 v~~  434 (450)
                      ||+
T Consensus       110 v~~  112 (113)
T d2bb0a1         110 VVN  112 (113)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            996

>d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: alpha-Subunit of urease
domain: alpha-Subunit of urease
species: Klebsiella aerogenes [TaxId: 28451]

Probab=99.25  E-value=4.7e-13  Score=105.46  Aligned_cols=78  Identities=18%  Similarity=0.192  Sum_probs=58.1

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCC-------CCCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhCCce
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRN-------SKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGIT   74 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~-------~~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT   74 (450)
                      +++||.|+||||++|++..++..+       ..+.++||++|++|+||+||+|+|+..+. ..++.+......++..|++
T Consensus        81 ~kaDIgIkdGrI~~IGkagnpd~~d~v~l~~g~~tevIdaeG~ivtpG~ID~HvHf~~p~-~~~eal~sG~tt~igGG~~  159 (181)
T d1ejxc1          81 VKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGSIEVGKLADLVV-WSPAFFGVKPATVIKGGMI  159 (181)
T ss_dssp             EEEEEEEETTEEEEEECEECTTTCSSCCEECCTTCEEEECTTCEEEECSSCTTSBCCEEE-ECGGGTTTSCSEEEETTEE
T ss_pred             EEEEEEEeCCEEEEEecCCCccccCCceeeeccceEEecCCCcEEeeeeeecceEEeeee-eehhhhccchheEEeCCce
Confidence            679999999999999986443211       24789999999999999999999998873 3334455555555666666


Q ss_pred             EEEeCC
Q 013050           75 TLIDMP   80 (450)
Q Consensus        75 ~~~~~~   80 (450)
                      .+..++
T Consensus       160 ~~gpm~  165 (181)
T d1ejxc1         160 AIAPMG  165 (181)
T ss_dssp             EEEEEC
T ss_pred             EEEECC
Confidence            666665

>d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Hypothetical protein TM0936
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=5.4e-15  Score=111.66  Aligned_cols=85  Identities=21%  Similarity=0.233  Sum_probs=65.5

Q ss_pred             CCHHHHHHHHhhchhHHhCCCCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEE
Q 013050          353 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV  432 (450)
Q Consensus       353 ls~~~al~~aT~~~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v  432 (450)
                      .+.++++.++|..+|..+|+.++|+|++|++|||+++|.+.+...+.. ++..    ...|-   ..++|++|||+|++|
T Consensus        26 ~t~~~~~~~~t~~~a~~~G~~~~GrIe~G~~ADivviDl~~p~~~p~~-dp~~----~lV~~---~~~~V~~V~V~Gk~V   97 (123)
T d1p1ma1          26 GTIKRVLQGEVKVDLDLSGKLVMPKIEEGWNADLVVIDLDLPEMFPVQ-NIKN----HLVHA---FSGEVFATMVAGKWI   97 (123)
T ss_dssp             TEEEEEEESSCCCSEECTTEEEEESCCTTSBCCEEEEECCSGGGCSGG-GHHH----HHHHT---CCSCCSEEEETTEEE
T ss_pred             ccHHHHHhhhhccChhhcCCccccccCCCCCcCEEEEeCCCCcccchh-hhHH----HHHhc---cCCCccEEEECCEEE
Confidence            477889999999999999997799999999999999999986654332 1111    11121   135799999999999


Q ss_pred             EecCcccCCCCCc
Q 013050          433 YKEGNHAPAACGS  445 (450)
Q Consensus       433 ~~~g~~~~~~~g~  445 (450)
                      |+||++++-+...
T Consensus        98 v~dG~~~~iD~~e  110 (123)
T d1p1ma1          98 YFDGEYPTIDSEE  110 (123)
T ss_dssp             EETTBCTTSCHHH
T ss_pred             EECCeEcccCHHH
Confidence            9999998765433

>d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Two-domain dihydroorotase
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.24  E-value=2.5e-12  Score=96.26  Aligned_cols=72  Identities=26%  Similarity=0.481  Sum_probs=64.2

Q ss_pred             HhhchhHHhCC---CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050          362 WSERPAKLAGQ---VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE  435 (450)
Q Consensus       362 aT~~~A~~lg~---~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~  435 (450)
                      .+.++|+.+..   ...|.|++|+.|||+|+|++.+|++..+ .+.+... ++||.|..+.++|..||++|++||+|
T Consensus        38 i~~~~a~viD~~g~~~~~~l~~G~~ADl~i~Dp~~~~~v~~~-~~~Sk~~-nspf~g~~l~G~v~~T~~~G~~v~~d  112 (112)
T d1xrta1          38 ILVPEAEIIDAKGLIVCPTLKLGSPADITIFDPNKEWILNEE-TNLSKSR-NTPLWGKVLKGKVIYTIKDGKMVYKD  112 (112)
T ss_dssp             CCCSSEEEEECTTSEEEECCCTTSBCCEEEEEEEEEEECSTT-TCCSSCC-CCTTTTCEEEEEEEEEEETTEEEEEC
T ss_pred             CCcccceEEehhcccccceeecccceEEEEecCCccEEECHH-HccCcCC-CceecCCEEeeEEEEEEECCEEEEeC
Confidence            35577777744   3369999999999999999999999988 8999999 99999999999999999999999986

>d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Uncharacterized protein BL1453
species: Bifidobacterium longum [TaxId: 216816]

Probab=99.23  E-value=1.9e-12  Score=97.14  Aligned_cols=52  Identities=10%  Similarity=0.029  Sum_probs=42.3

Q ss_pred             cceeEEEe-CCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccCCCC
Q 013050            2 CKRAVEIK-EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG   54 (450)
Q Consensus         2 ~~~~V~I~-~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~   54 (450)
                      .+++|+|+ ||||.+|++..+.+. ..+.++||++|++|||||||+|+|+...+
T Consensus        24 ~~~~ilI~~dG~I~~vg~~~~~~~-~~~~~viD~~Gk~v~PGlid~H~Hl~~~g   76 (118)
T d2p9ba1          24 RNMTIVVGADGRIEQVAPSIETSI-PAEYHYLDGTGKIVMLEVGKSADLLVLNA   76 (118)
T ss_dssp             EEEEEEECTTSBEEEEEEGGGCCC-CTTCEEEECTTCEEECCTTSBCCEEEESS
T ss_pred             eeEEEEEecCCeEEEEcccccccc-cceeEEEeccCcEEEeeecceeEEEEecC
Confidence            46789996 699999998655432 24679999999999999999999986544

>d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: L-hydantoinase
species: Arthrobacter aurescens [TaxId: 43663]

Probab=99.23  E-value=1.4e-11  Score=94.30  Aligned_cols=72  Identities=21%  Similarity=0.389  Sum_probs=66.8

Q ss_pred             CccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050          376 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA  449 (450)
Q Consensus       376 G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~  449 (450)
                      ..|++|..|||+++|++..+++..+ .+.+... ++||.|..+.++|..||++|++||++|+++.+ ..|+||++
T Consensus        54 P~~~vG~DAD~~l~Dp~~~~~v~~~-~~~sk~~-~tpf~G~~~~G~v~~Ti~rG~~v~~~ge~~~~~g~G~~i~r  126 (126)
T d1gkra1          54 PTLQVGSDADLLILDLDIDTKVDAS-QFRSLHK-YSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVTR  126 (126)
T ss_dssp             ESCCTTSBCCEEEEESCCCEECCGG-GCSSSCC-CCTTTTCEECCEEEEEEETTEEEEETTEECSCTTCCCBCCC
T ss_pred             cceeecccchhheeccccceeccHH-HHHhhhc-ccccCCcEEEeEEEEEEECCEEEEECCEEEecCCCCeEccC
Confidence            4599999999999999999999888 8888888 99999999999999999999999999999965 68999975

>d2paja1 b.92.1.4 (A:10-69,A:406-484) Hypothetical protein GOS_1943094 {Environmental samples}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Hypothetical protein GOS 1943094
species: Environmental samples

Probab=99.22  E-value=1.2e-12  Score=101.76  Aligned_cols=81  Identities=15%  Similarity=0.140  Sum_probs=62.7

Q ss_pred             CHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECC
Q 013050          354 TLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRG  429 (450)
Q Consensus       354 s~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G  429 (450)
                      +.++++.++|.++|+++|+ +..|+|++||.|||+++|.+.+...+..          .|+...++   ...|++|||+|
T Consensus        36 ~~~~i~~~at~~Ga~~l~~~~~ig~l~~G~~ADli~~d~~~p~~~p~~----------dp~~~lV~~~~~~~V~~v~V~G  105 (139)
T d2paja1          36 TIDAIGALAPRPGETIVDATDCVIYVAVGYAADIAVYRLDDPRYFGLH----------DPAIGPVASGGRPSVMALFSAG  105 (139)
T ss_dssp             EEEEESSCCCCTTCEEEECBTCEEECSTTSBCCEEEEECCSGGGTTCS----------SGGGHHHHSCSCCEEEEEEETT
T ss_pred             cHHHHHhhhhhccchhcCCCCccceeccCCcccEEEEcCCCcccCCCC----------CHHHHHHHhhCcCcceeEEEcC
Confidence            4455566899999999999 7789999999999999999876544322          23322332   25799999999


Q ss_pred             eEEEecCcccCCCCC
Q 013050          430 NLVYKEGNHAPAACG  444 (450)
Q Consensus       430 ~~v~~~g~~~~~~~g  444 (450)
                      |++++||++++-+..
T Consensus       106 ~~vv~dg~l~~iD~~  120 (139)
T d2paja1         106 KRVVVDDLIEGVDIK  120 (139)
T ss_dssp             EEEEETTBCTTCCHH
T ss_pred             EEEEECCEeccCCHH
Confidence            999999999876543

>d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Isoaspartyl dipeptidase
domain: Isoaspartyl dipeptidase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.2e-11  Score=91.41  Aligned_cols=68  Identities=19%  Similarity=0.171  Sum_probs=51.7

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeecccc---CCCCCCcccchHHHHHHHHhCCceEEEeC
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---DDPGRTEWEGFPSGTKAAAAGGITTLIDM   79 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~---~~~~~~~~~~~~~~~~~~~~~GvT~~~~~   79 (450)
                      .++|+|++|||++|++..+... .++.++||++|++|+|||||+|.|.   ..+...        .++.+.+|+|++.+.
T Consensus        25 ~~dI~I~~g~I~~I~~~~~~~~-~~~~~vID~~G~~v~PG~ID~H~h~~~~~~p~~~--------~~~~~~~G~~~v~~~   95 (105)
T d1onwa1          25 ICDVLVANGKIIAVASNIPSDI-VPNCTVVDLSGQILCPEILPGNDADLLVMTPELR--------IEQVYARGKLMVKDG   95 (105)
T ss_dssp             ECEEEEETTEEEEEETTCCTTS-SSSCEEEECTTCEEEESCCTTSBCCEEEECTTCC--------EEEEEETTEEEEETT
T ss_pred             eeeEEEECCEEEEeccCccccc-CCCCeEEcCCCCEEeCCEeecccCcceecCCCcc--------hHHHhhcceEEeccC
Confidence            5789999999999998765432 3577899999999999999999764   333222        234467899988765

>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Phosphotriesterase-like
domain: Phosphotriesterase homology protein
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=5.3e-09  Score=93.43  Aligned_cols=152  Identities=17%  Similarity=0.186  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCce
Q 013050          153 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH  232 (450)
Q Consensus       153 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~  232 (450)
                      .+.+++.+++|++.|+||.+|.+....                               .. +.+....+..    .....
T Consensus       137 ~~~f~~~~~~A~~~~lPv~iH~r~~~~-------------------------------~~-e~~~~l~~~~----~~~~~  180 (291)
T d1bf6a_         137 EKVFIAAALAHNQTGRPISTHTSFSTM-------------------------------GL-EQLALLQAHG----VDLSR  180 (291)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEECGGGCS-------------------------------HH-HHHHHHHHTT----CCGGG
T ss_pred             HHHHHHHHHHHHHhCCCeEEeccchhh-------------------------------hH-HHHHHHHHhC----CCccc
Confidence            356888999999999999999854321                               01 1222222220    11344


Q ss_pred             EEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCe--eEEcC
Q 013050          233 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI--DMLSS  310 (450)
Q Consensus       233 ~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~--~~~gt  310 (450)
                      ..+.|+... .+.+..+++.+.|..+.........               ..|   .......+.++++.+..  ++++|
T Consensus       181 ~~~~H~~f~-~~~e~~~~~~~~G~~i~~~g~~~~~---------------~~~---~~~~~~~~~~lv~~~p~drilleT  241 (291)
T d1bf6a_         181 VTVGHCDLK-DNLDNILKMIDLGAYVQFDTIGKNS---------------YYP---DEKRIAMLHALRDRGLLNRVMLSM  241 (291)
T ss_dssp             EEECCCCSS-CCHHHHHHHHHTTCEEEECCTTCTT---------------TSC---HHHHHHHHHHHHHTTCGGGEEECC
T ss_pred             ceecccCCC-CCHHHHHHHHhcCeeEEeccccccc---------------CCc---HHHhHHHHHHHHHhCCchhEEEec
Confidence            666788433 6778888888888766654322110               000   12233445666666543  68999


Q ss_pred             CCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHh
Q 013050          311 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLA  370 (450)
Q Consensus       311 D~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~l  370 (450)
                      |+ |........          |-.+....+...+..+++.|+|.+++-++.+.||+|++
T Consensus       242 D~-p~~~p~~~~----------g~~~~~~~~~~~~~~l~~~g~s~e~i~~i~~~Np~rlf  290 (291)
T d1bf6a_         242 DI-TRRSHLKAN----------GGYGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQFF  290 (291)
T ss_dssp             CC-CSGGGSGGG----------TSCCTTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHC
T ss_pred             CC-CCccccccC----------CCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            94 432222211          22333444555556667789999999999999999987

>d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Zn-dependent arginine carboxypeptidase
species: Unidentified organism [TaxId: 32644]

Probab=99.06  E-value=1.3e-12  Score=92.38  Aligned_cols=61  Identities=16%  Similarity=0.082  Sum_probs=49.2

Q ss_pred             HHHHHHhhchhHHhCC-CC--CCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEE
Q 013050          357 QLASWWSERPAKLAGQ-VS--KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY  433 (450)
Q Consensus       357 ~al~~aT~~~A~~lg~-~~--~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~  433 (450)
                      ++++.+|.|+|+++++ ++  +|+|++||.|||++++.||..++.                   ...+|..||++|+++.
T Consensus        32 ~ai~~~t~~~A~il~l~d~illG~I~~Gk~ADlvlvdgnPL~dI~-------------------~l~~i~~Vik~G~v~k   92 (95)
T d3be7a1          32 AEIGKINTKDATVISIPDLILIPQIKEGFDADIVGVIENPLANIR-------------------TLEEVAFVMKEGKVYK   92 (95)
T ss_dssp             EEEECCCCSSSEEEEEEEEEEEESCCTTSBCCEEEESSCTTTCGG-------------------GTTSCCEEEETTEEEE
T ss_pred             HHHHhhccChHHhcCCCCccccceeccCceeeEEEEcCCchhhhH-------------------HhcCCCEEEECCEEEc
Confidence            4678899999999999 55  499999999999999988644332                   1136789999999887


Q ss_pred             ecC
Q 013050          434 KEG  436 (450)
Q Consensus       434 ~~g  436 (450)
                      ++|
T Consensus        93 ~e~   95 (95)
T d3be7a1          93 REG   95 (95)
T ss_dssp             ECC
T ss_pred             CCC
Confidence            765

>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Putative deoxyribonuclease YcfH
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=3e-08  Score=86.75  Aligned_cols=254  Identities=16%  Similarity=0.138  Sum_probs=137.5

Q ss_pred             ceeeccccCCCCCCc-ccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEE--EEeccccCCCc
Q 013050           43 LIDVHAHLDDPGRTE-WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV--GFWGGLVPENA  119 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~-~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  119 (450)
                      |||+|+|+....... .+++......+...||+.++..+       ..........+.......+.+  +.++... ...
T Consensus         3 lIDtH~Hld~~~~e~~~~d~~~vi~~a~~~gv~~ii~~~-------~~~~~~~~~~~l~~~~~~i~~~~GiHP~~~-~~~   74 (265)
T d1yixa1           3 LVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVA-------TTLPSYLHMRDLVGERDNVVFSCGVHPLNQ-NDP   74 (265)
T ss_dssp             EEEEEECGGGSCTTTTCSSHHHHHHHHHHTTEEEEEECC-------SSHHHHHHHHHHHCSCTTEEEEECCCTTCC-SSC
T ss_pred             EEEecccCCccccchhhcCHHHHHHHHHHcCCCEEEEee-------CCHHHHHHHHHHHHhccccccccccccccc-ccc
Confidence            799999997543221 24577778888999999988764       234444444444443333322  2232211 122


Q ss_pred             cchHHHHHHHH-cCCcEEEEe-cccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccc
Q 013050          120 YNASALEALLN-AGVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS  197 (450)
Q Consensus       120 ~~~~~~~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~  197 (450)
                      ...+.+.++.. ..+.++... ..+...........+.+.+.++.|.++++|+.+|++...                   
T Consensus        75 ~~~e~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~q~~~f~~ql~lA~~~~lPv~iH~r~a~-------------------  135 (265)
T d1yixa1          75 YDVEDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDAR-------------------  135 (265)
T ss_dssp             CCHHHHHHHHTSTTEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH-------------------
T ss_pred             cchHHHHHHhccCCceeeecccccccccccchHHHHHHHHHHHHHHHHhCCCcccchhhHH-------------------
Confidence            34566766665 334333221 111110000112234577889999999999999996543                   


Q ss_pred             cccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC
Q 013050          198 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG  277 (450)
Q Consensus       198 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~  277 (450)
                                     +.++++.+....    ...+. +.|+.+  .+.+.++++.+.|..++.  +......        
T Consensus       136 ---------------~~~~~il~~~~~----~~~~~-v~H~Fs--G~~~~a~~~l~~g~~~s~--~g~~~~~--------  183 (265)
T d1yixa1         136 ---------------ADTLAILREEKV----TDCGG-VLHCFT--EDRETAGKLLDLGFYISF--SGIVTFR--------  183 (265)
T ss_dssp             ---------------HHHHHHHHHTTG----GGTCE-EETTCC--SCHHHHHHHHTTTCEEEE--CGGGGST--------
T ss_pred             ---------------HHHHHHHHhhcc----cCcce-EEEeec--CChHHHHHHHHcCCeecC--ccccccc--------
Confidence                           334444443210    02233 578877  667788888787765554  2211100        


Q ss_pred             CCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCCHH
Q 013050          278 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLE  356 (450)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls~~  356 (450)
                                 .......+.+.+... .+.+.|| .|.....+..          |-..-...+...... +.-.|++.+
T Consensus       184 -----------~~~~l~~~v~~iPld-rlLlETD-~P~~~p~~~~----------~~~n~P~~i~~~~~~iA~i~~~~~~  240 (265)
T d1yixa1         184 -----------NAEQLRDAARYVPLD-RLLVETD-SPYLAPVPHR----------GKENQPAMVRDVAEYMAVLKGVAVE  240 (265)
T ss_dssp             -----------TCHHHHHHHHHSCGG-GEEECCC-BTSCCCTTCT----------TSCCCGGGHHHHHHHHHHHHTSCHH
T ss_pred             -----------hhHHHHHHHHhcchh-ceEeecC-CcccCccccC----------CCCCCcHHHHHHHHHHHHHHCcCHH
Confidence                       111111122222111 2579999 4543222111          111112234444443 344589999


Q ss_pred             HHHHHHhhchhHHhCC--CCCCcc
Q 013050          357 QLASWWSERPAKLAGQ--VSKGAI  378 (450)
Q Consensus       357 ~al~~aT~~~A~~lg~--~~~G~I  378 (450)
                      ++.+..+.|.-+++|+  .+.++|
T Consensus       241 ev~~~~~~Na~~lf~l~~~~~~~~  264 (265)
T d1yixa1         241 ELAQVTTDNFARLFHIDASRLQSI  264 (265)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGGCCC
T ss_pred             HHHHHHHHHHHHHhCCCHHHhccc
Confidence            9999999999999999  556665

>d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=1e-09  Score=97.27  Aligned_cols=57  Identities=11%  Similarity=0.098  Sum_probs=39.5

Q ss_pred             HhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHHHhcCCCHHHHHHHHhhchhHHhCC-CCCC
Q 013050          300 LMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKG  376 (450)
Q Consensus       300 ~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gls~~~al~~aT~~~A~~lg~-~~~G  376 (450)
                      ...|+.+.++||..+...                    ......+....+..|||++++|+++|.||||+||+ +++|
T Consensus       240 ~~~g~~~~~gtd~~~g~~--------------------~~l~~~~~~~v~~~gls~~~al~~aT~n~A~~LGldd~iG  297 (297)
T d1yrra2         240 YYRNGLCVDENGTLSGSS--------------------LTMIEGVRNLVEHCGIALDEVLRMATLYPARAIGVEKRLG  297 (297)
T ss_dssp             EECSSCEECTTCCEEEBC--------------------CCHHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTCTTTSS
T ss_pred             EEeCCEEEecCCCCccch--------------------hhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCcCcC
Confidence            456788889998532210                    01122223334557999999999999999999999 7666

>d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Uncharacterized protein EAJ56179
species: Unidentified organism [TaxId: 32644]

Probab=98.96  E-value=2.1e-10  Score=84.55  Aligned_cols=44  Identities=18%  Similarity=0.230  Sum_probs=37.5

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccc
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH   49 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H   49 (450)
                      ..+|+|++|+|++|++....+   .++++||++|++|||||||.|.|
T Consensus        21 ~~~I~I~~g~I~~i~~~~~~~---~~~~vID~~G~~v~PGlid~h~~   64 (102)
T d2r8ca1          21 GFEILIEDGFIREVSDKPIKS---SNAHVIDVKGKTIMPRIVPGAHA   64 (102)
T ss_dssp             EEEEEEESSBEEEEESSCCCC---SSCEEEECTTCEEEESCCTTSBC
T ss_pred             CcEEEEECCEEEEccccCCCC---CCCEEEeCCCCEEECceeeheee
Confidence            468999999999999865433   47899999999999999987764

>d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=1.9e-09  Score=95.78  Aligned_cols=53  Identities=23%  Similarity=0.184  Sum_probs=39.7

Q ss_pred             cceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHH
Q 013050           42 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKL   95 (450)
Q Consensus        42 G~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~   95 (450)
                      ||||+|+|+..+......++....+.++++||||+++++ ++.+.......+..
T Consensus         1 GlID~HvH~~~~~~~~~~~~~~~~~~~l~~GvTTv~~~~-~t~~~~~~~~~~~~   53 (288)
T d1o12a2           1 GFVDPHIHGVVGADTMNCDFSEMEEFLYSQGVTTFLATT-VSTSLEKMKEILRK   53 (288)
T ss_dssp             CEEEEEECEETTEETTTTCHHHHHHHHHTTTEEEEEEEC-CSCCHHHHHHHHHH
T ss_pred             CeEEecccCCCCCccccccHHHHHHHHHhCCeEEEcCCC-CCCCHHHHHHHHHH
Confidence            899999998776655567788889999999999999886 55544333333333

>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Deoxyribonuclease TatD (MttC)
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=5.9e-08  Score=84.41  Aligned_cols=246  Identities=15%  Similarity=0.072  Sum_probs=134.7

Q ss_pred             ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC--ceEEEEeccccCC-Cc
Q 013050           43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLVPE-NA  119 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~  119 (450)
                      +||+|+|+....+.  +++......+...||+.++..+       ..........+.+....  ...++.|+..... ..
T Consensus         1 liD~H~HL~~~~f~--~d~~~vl~~a~~~gV~~ii~~~-------~~~~~~~~~~~la~~~~~v~~a~GiHP~~~~~~~~   71 (260)
T d1xwya1           1 MFDIGVNLTSSQFA--KDRDDVVACAFDAGVNGLLITG-------TNLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQA   71 (260)
T ss_dssp             CEEEEECTTSGGGT--TTHHHHHHHHHHTTCCEEEECC-------CSHHHHHHHHHHHHHSTTEEEEECCCGGGGGGCCH
T ss_pred             CEEEEeCCCChHHh--CCHHHHHHHHHHCCCCEEEEec-------CCHHHHHHHHHHHHhCCcccchhhcCcchhhhhhh
Confidence            69999999865433  4577888899999999998775       23444444444443322  2334444433322 22


Q ss_pred             cchHHHHHHHHc------CCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCc
Q 013050          120 YNASALEALLNA------GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT  193 (450)
Q Consensus       120 ~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~  193 (450)
                      ...+.+.++...      |..|+..+....    ......+.+.+.+++|.++++||.+|++...               
T Consensus        72 ~~~~~~~~~~~~~~~vaIGEiGLD~~~~~~----~~~~q~~~f~~ql~lA~~~~lPviiH~r~a~---------------  132 (260)
T d1xwya1          72 ATEEAIIELAAQPEVVAIGECGLDFNRNFS----TPEEQERAFVAQLRIAADLNMPVFMHCRDAH---------------  132 (260)
T ss_dssp             HHHHHHHHHHTSTTEEEEEEEEEETTTCSS----CHHHHHHHHHHHHHHHHHHTCCEEEEEESCH---------------
T ss_pred             hHHHHHHHHHhcchhhhhhhhccccccccc----chHHHHHHHHHHHHHHHhcCCceEeeeccch---------------
Confidence            233444454442      333333221111    1112235677888999999999999996543               


Q ss_pred             cccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccc
Q 013050          194 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE  273 (450)
Q Consensus       194 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~  273 (450)
                                         +.++++.++...     ..+-.+.|+.+  .+.+.++++.+.|..++..  +.....    
T Consensus       133 -------------------~~~~~il~~~~~-----~~~~~v~H~f~--g~~~~~~~~~~~g~~~s~~--g~~~~~----  180 (260)
T d1xwya1         133 -------------------ERFMTLLEPWLD-----KLPGAVLHCFT--GTREEMQACVAHGIYIGIT--GWVCDE----  180 (260)
T ss_dssp             -------------------HHHHHHHGGGGG-----GSSCEEECSCC--CCHHHHHHHHHTTCEEEEC--GGGGCT----
T ss_pred             -------------------hHHHHHHHHhhc-----cCcccchhhhh--ccHHHHHHhhhhccccccC--ccccch----
Confidence                               345555554311     11122467777  5667788887888665552  211100    


Q ss_pred             cCCCCCceEEcCCCCChhhHHHHHHHHhc-C-CeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-Hh
Q 013050          274 IPDGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RK  350 (450)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~  350 (450)
                                       .....+.+.++. . -.+.+.||+ |+......      ...+.|--.-...+......+ .-
T Consensus       181 -----------------~~~~~~~~~~~~iPldrlllETD~-P~~~p~~~------~~~~~~~~NeP~~l~~v~~~lA~~  236 (260)
T d1xwya1         181 -----------------RRGLELRELLPLIPAEKLLIETDA-PYLLPRDL------TPKPSSRRNEPAHLPHILQRIAHW  236 (260)
T ss_dssp             -----------------TTSHHHHHHGGGSCGGGEEECCCT-TSCCCTTC------TTCCCSSCCCGGGHHHHHHHHHHH
T ss_pred             -----------------hhHHHHHHHHHhhhhhheeeecCC-CCCCCccc------cccccCCCCChHHHHHHHHHHHHH
Confidence                             001112233332 1 136799994 44322211      000111111122355554443 44


Q ss_pred             cCCCHHHHHHHHhhchhHHhCC
Q 013050          351 YGVTLEQLASWWSERPAKLAGQ  372 (450)
Q Consensus       351 ~gls~~~al~~aT~~~A~~lg~  372 (450)
                      .|++++++.+..+.|.-+++|+
T Consensus       237 ~g~~~~ev~~~~~~N~~~~f~l  258 (260)
T d1xwya1         237 RGEDAAWLAATTDANVKTLFGI  258 (260)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHCC
T ss_pred             hCcCHHHHHHHHHHHHHHHhCC
Confidence            6899999999999999999987

>d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Burkholderia pickettii [TaxId: 329]

Probab=98.90  E-value=5.1e-10  Score=85.36  Aligned_cols=45  Identities=18%  Similarity=0.286  Sum_probs=39.7

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD   51 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~   51 (450)
                      .+++|+|+||||++|++...     ++.++||++|++|+||+||+|+|+.
T Consensus        17 ~~~di~I~dg~I~~ig~~~~-----~~~~~iDa~G~~v~Pg~i~~~~~~~   61 (127)
T d1nfga1          17 SRADLGIKDGKITQIGGALG-----PAERTIDAAGRYVFPIAVGSDADIV   61 (127)
T ss_dssp             EEEEEEEETTEEEEESSCCC-----CCSEEEECTTCEEEECSTTSBCCEE
T ss_pred             EEEEEEEECCEEEEeeCCCC-----CceEEEEeeceEEeeecccccccce
Confidence            46899999999999998653     3678999999999999999999973

>d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Burkholderia pickettii [TaxId: 329]

Probab=98.88  E-value=1.8e-09  Score=82.25  Aligned_cols=70  Identities=30%  Similarity=0.580  Sum_probs=63.9

Q ss_pred             cccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050          378 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA  449 (450)
Q Consensus       378 I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~  449 (450)
                      +.+|..|||+++|++..+++..+ .+.+... ++||+|..+.+.|.+||++|++||++|++.++ ..|+||++
T Consensus        52 g~i~~~~~~~i~dP~~~~tIt~~-~~~s~~~-~tpyeG~~~~G~~~~Ti~rG~~V~~~g~~~~~~g~G~~l~R  122 (127)
T d1nfga1          52 IAVGSDADIVLWDPEAEMVIEQT-AMHNAMD-YSSYEGHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLKR  122 (127)
T ss_dssp             CSTTSBCCEEEEEEEEEEECCGG-GSCSSCS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTSCCBCCC
T ss_pred             ecccccccceeeccccceEEehH-HhccccC-cCCCcCCEEeeEEEEEEECCEEEEECCEEeecCCCCeEccC
Confidence            46788999999999998998888 8888888 99999999999999999999999999999976 58999976

>d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.88  E-value=2.5e-09  Score=81.81  Aligned_cols=70  Identities=24%  Similarity=0.511  Sum_probs=63.7

Q ss_pred             cccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050          378 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA  449 (450)
Q Consensus       378 I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~  449 (450)
                      +.+|..||++++|++..+++..+ .+.+... ++||+|..+.+.|.+||++|++||++|+++.+ ..|+||++
T Consensus        53 ~~v~~~~~~~~~dp~~~~~i~~~-~~~s~~~-~tpf~G~~~~g~v~~Ti~rG~~V~~dg~~~~~~G~G~fv~R  123 (128)
T d1k1da1          53 IVVGSDADLVIFDPNIERVISAE-THHMAVD-YNAFEGMKVTGEPVSVLCRGEFVVRDKQFVGKPGYGQYLKR  123 (128)
T ss_dssp             CSTTSBCCEEEEEEEEEEECCTT-TCCSSSS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCSCBCCC
T ss_pred             eecccccceEEeeccccEEEecc-ccccccc-eeeecCcEEEEEEEEEEECCEEEEECCEEEecCCCCeEecC
Confidence            45688999999999998999888 8888888 99999999999999999999999999999955 68999976

>d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Thermus sp. [TaxId: 275]

Probab=98.86  E-value=2.3e-09  Score=81.10  Aligned_cols=68  Identities=21%  Similarity=0.407  Sum_probs=61.8

Q ss_pred             cccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050          378 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA  449 (450)
Q Consensus       378 I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~  449 (450)
                      +.||  ||++++|.+..+++..+ .+.+... ++||+|..+.+.|..|+++|++||++|+++++ ..|++|++
T Consensus        50 v~~g--~d~~~~d~~~~~tis~~-~~~s~~~-~tpfeG~~~~G~v~~ti~rG~~v~~~g~~~~~~g~G~~l~R  118 (123)
T d1gkpa1          50 VFPG--ADLVVYDPQYRGTISVK-TQHVNND-YNGFEGFEIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLLRR  118 (123)
T ss_dssp             EEEC--CCEEEEETTCCEECCGG-GCCSSSS-CCTTTTCEESCEEEEEEETTEEEEETTEECCCTTCCCBCCC
T ss_pred             EecC--cceEEEecccccccchh-hhhcccc-cccccccEEeeEEEEEEECCEEEEECCEEEecCCCCeEeCC
Confidence            5677  69999999999999888 7888887 99999999999999999999999999999966 59999986

>d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Bacillus sp. AR9 [TaxId: 301298]

Probab=98.86  E-value=6.5e-10  Score=85.08  Aligned_cols=46  Identities=13%  Similarity=0.184  Sum_probs=38.7

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD   51 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~   51 (450)
                      ..+||+|+||+|++|++..+.    +++++||++|++|+||+||.|+|+.
T Consensus        16 ~~~di~I~~g~I~~ig~~~~~----~~~~viDa~g~~v~Pg~i~~~~~~~   61 (127)
T d1ynya1          16 YQADVLIEGERVVAIGHQLSV----NGAEEIDATGCYVIPIAVGSDADIV   61 (127)
T ss_dssp             EECEEEEETTEEEEEECC--------CCEEEECTTSEEEECSTTSBCCEE
T ss_pred             EEEeEEEECCEEEEecCCCCC----CCCEEEEhhhceeecccccccchhh
Confidence            468999999999999987653    3679999999999999999999983

>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Putative deoxyribonuclease YjjV
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=1.3e-07  Score=82.32  Aligned_cols=249  Identities=17%  Similarity=0.162  Sum_probs=129.8

Q ss_pred             ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEeccccCC-Cccc
Q 013050           43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAYN  121 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  121 (450)
                      |||+|+|+....+.  ++.......+...||+.++..+  +.  ...........+.. ......++.++..... ....
T Consensus         5 ~ID~H~HLd~~~~~--~d~~~~l~~a~~~gV~~~v~~~--t~--~~~~~~~~~l~~~~-~~i~~~~GiHP~~~~~~~~~~   77 (259)
T d1zzma1           5 FIDTHCHFDFPPFS--GDEEASLQRAAQAGVGKIIVPA--TE--AENFARVLALAENY-QPLYAALGLHPGMLEKHSDVS   77 (259)
T ss_dssp             EEESCBCTTSTTTT--TCHHHHHHHHHHTTEEEEEEEC--CS--GGGHHHHHHHHHHC-TTEEEEECCCGGGGGGCCHHH
T ss_pred             EEEeCcCCCChhhC--cCHHHHHHHHHHcCCCEEEEec--CC--HHHHHHHHHHHhcC-ccccccccCCchHhhccchhh
Confidence            79999999754432  4467778888999999887653  11  12333333333222 2223334444433222 2222


Q ss_pred             hHHHHHHHH---cCCcEEEEe-cccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccc
Q 013050          122 ASALEALLN---AGVLGLKSF-MCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS  197 (450)
Q Consensus       122 ~~~~~~~~~---~g~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~  197 (450)
                      .+....+..   ..+.++... ..+...........+.+.+.+++|+++++||.+|.+...                   
T Consensus        78 ~~~~~~~~~~~~~~~v~iGEiGld~~~~~~~~~~q~~~f~~ql~lA~~~~~Pv~IH~r~a~-------------------  138 (259)
T d1zzma1          78 LEQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH-------------------  138 (259)
T ss_dssp             HHHHHHHHHHCCSSEEEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESCH-------------------
T ss_pred             HHHHHHHHhccCcccceeccccccccccchhhhHHHHHHHHHHHHHHHhccchhhhhHHHH-------------------
Confidence            333444433   222222111 111100000011235677889999999999999996543                   


Q ss_pred             cccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC
Q 013050          198 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG  277 (450)
Q Consensus       198 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~  277 (450)
                                     ..++++.+...      ..+..+.|+.+  .+.+.++++.+.|..++.  ++.....        
T Consensus       139 ---------------~~~~~~l~~~~------~~~~~i~H~f~--g~~~~~~~~l~~g~~~si--~~~~~~~--------  185 (259)
T d1zzma1         139 ---------------DKLAMHLKRHD------LPRTGVVHGFS--GSLQQAERFVQLGYKIGV--GGTITYP--------  185 (259)
T ss_dssp             ---------------HHHHHHHHHHC------CTTCEEETTCC--SCHHHHHHHHHTTCEEEE--CGGGGCT--------
T ss_pred             ---------------HHHHHhhhccc------cccceeeeccc--CCHHHHHHHHHcCCCccc--ccccccc--------
Confidence                           23444444431      11224578887  677788888788765544  3321110        


Q ss_pred             CCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHH
Q 013050          278 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLE  356 (450)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~  356 (450)
                                 .......+.+.+... .+.+.|| .|........          |.......+...+..+ .-.+++.+
T Consensus       186 -----------~~~~~~~~v~~iPld-riL~ETD-~P~~~~~~~~----------~~~~~P~~~~~~~~~iA~i~~~~~~  242 (259)
T d1zzma1         186 -----------RASKTRDVIAKLPLA-SLLLETD-APDMPLNGFQ----------GQPNRPEQAARVFAVLCELRREPAD  242 (259)
T ss_dssp             -----------TTCSHHHHHHHSCGG-GEEECCC-BTSSCCTTCT----------TSCCCGGGHHHHHHHHHHHCSSCHH
T ss_pred             -----------chHHHHHHHHhhccc-eEEEecC-CCCcCCCcCC----------CCCCchHHHHHHHHHHHHHhCCCHH
Confidence                       001111122222211 3569999 4442211110          1111123344455543 45689999


Q ss_pred             HHHHHHhhchhHHhCCC
Q 013050          357 QLASWWSERPAKLAGQV  373 (450)
Q Consensus       357 ~al~~aT~~~A~~lg~~  373 (450)
                      ++.+..+.|.-++++++
T Consensus       243 ev~~~~~~N~~rlf~lp  259 (259)
T d1zzma1         243 EIAQALLNNTYTLFNVP  259 (259)
T ss_dssp             HHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            99999999999999873

>d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Guanine deaminase
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.83  E-value=6.3e-11  Score=87.75  Aligned_cols=65  Identities=9%  Similarity=-0.027  Sum_probs=47.8

Q ss_pred             HHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceE---eeEEEEEEECCeEEE
Q 013050          361 WWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVY  433 (450)
Q Consensus       361 ~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~v~v~G~~v~  433 (450)
                      .+|.++|+++++ +++|+|++||.||++++|.+.+...+.       .. ..++...++   .+.|+.|||+|++||
T Consensus        41 pat~~ga~~~~~~~~ig~~e~Gk~AD~vviD~~~~~~~~~-------~~-~d~L~~li~~gd~r~V~~V~V~G~~VY  109 (109)
T d2i9ua1          41 PDKYKGNPIIDFRNNIIIFEEGYDFDALVINDSNLYPEDY-------DL-TERLERFIYLGDDRNIMKRYVCGNEIF  109 (109)
T ss_dssp             CGGGTTSCEEEEEEEEEECSTTCBCCEEEECCTTSCGGGS-------CH-HHHHHHHHHHCCGGGEEEEEETTEEEC
T ss_pred             HHHhCCceeeccccceeeecCCCEeeEEEEcCCCcchhhh-------hh-hhHHHHheeeCCCCceeEEEECCEECC
Confidence            469999999999 889999999999999999775332211       11 223332222   247999999999997

>d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Bacillus sp. AR9 [TaxId: 301298]

Probab=98.81  E-value=6.9e-09  Score=79.24  Aligned_cols=70  Identities=27%  Similarity=0.525  Sum_probs=64.0

Q ss_pred             cccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCccccc
Q 013050          378 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA  449 (450)
Q Consensus       378 I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~~  449 (450)
                      +.+|..|||+++|++..+++... ++.+... ++||+|..+.+.|..|+++|++||++|+++.+ ..|+||++
T Consensus        52 g~i~~~~~~~i~dp~~~~tI~~~-~~~s~~~-~tpfeG~~~~G~v~~Ti~rG~~v~~~g~~~~~~g~G~fi~R  122 (127)
T d1ynya1          52 IAVGSDADIVIFDPHVKRTLSVE-THHMNVD-YNPFEGMEVYGEVVSVLSRGSFVVRDKQFVGQAGSGQYIKR  122 (127)
T ss_dssp             CSTTSBCCEEEEEEEEEEEECTT-TCCSSSS-CCTTTTEEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCC
T ss_pred             ccccccchhhhhccccceEEeeh-hhhhccC-cCCcCCCEEeeEEEEEEECCEEEEECCEEeecCCCceEecC
Confidence            56799999999999999999988 8888888 99999999999999999999999999999966 48999975

>d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Xaa-Pro dipeptidase
species: Alteromonas macleodii [TaxId: 28108]

Probab=98.80  E-value=1e-09  Score=79.30  Aligned_cols=46  Identities=11%  Similarity=0.102  Sum_probs=39.3

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccc
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH   49 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H   49 (450)
                      .+.+|+|++|+|++|++....+.  +..++||++|++|||||+|.|.|
T Consensus        20 ~~~~I~I~~~~I~~V~~~~~~~~--~~~~vID~~G~~v~PGL~~g~~~   65 (96)
T d2qs8a1          20 SRISIVIDGNIISDIKKGFISSN--DFEDYIDLRDHTVLPSIESGKLA   65 (96)
T ss_dssp             EEEEEEEETTEEEEEEESCCCCT--TSSEEEEEEEEEEEESCCTTSBC
T ss_pred             cCceEEEECCEEEEEcccccCCC--CCCEEEECCCCEeccCccccCcc
Confidence            35789999999999997543322  46899999999999999999999

>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: TatD Mg-dependent DNase-like
domain: Hypothetical protein TM0667
species: Thermotoga maritima [TaxId: 2336]

Probab=98.78  E-value=3.2e-07  Score=79.66  Aligned_cols=247  Identities=14%  Similarity=0.097  Sum_probs=133.7

Q ss_pred             ceeeccccCCCCCCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC--ceEEEEeccccCC-Cc
Q 013050           43 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLVPE-NA  119 (450)
Q Consensus        43 ~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~  119 (450)
                      +||+|+|+....+.  ++.......+..+||+.++..+       ..........+.+....  ...++.++..... ..
T Consensus         5 lIDsH~HLd~~~~~--~d~~~vi~~a~~~gV~~ii~~~-------~~~~~~~~~~~la~~~~~i~~a~GiHP~~~~~~~~   75 (260)
T d1j6oa_           5 MVDTHAHLHFHQFD--DDRNAVISSFEENNIEFVVNVG-------VNLEDSKKSLDLSKTSDRIFCSVGVHPHDAKEVPE   75 (260)
T ss_dssp             EEEEEECTTSGGGT--TTHHHHHHTTTTTTEEEEEEEC-------SSHHHHHHHHHHHTTCTTEEEEECCCGGGGGGCCT
T ss_pred             cEEeccCCCChhhC--cCHHHHHHHHHHCCCCEEEEec-------CCHHHHHHHHHHHHhccccccccccChhhcccccc
Confidence            79999999765432  4567777888899999988764       22444444444443322  2334444433322 22


Q ss_pred             cchHHHHHHHHc-CCcEEEE-ecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccc
Q 013050          120 YNASALEALLNA-GVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS  197 (450)
Q Consensus       120 ~~~~~~~~~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~  197 (450)
                      +..+.+..+++. .+.++.. ...+...........+.+.+.+++|+++++|+.+|++...                   
T Consensus        76 ~~~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vF~~ql~lA~~~~lPviiH~r~a~-------------------  136 (260)
T d1j6oa_          76 DFIEHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGKLNLPLVVHIRDAY-------------------  136 (260)
T ss_dssp             THHHHHHHHTTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH-------------------
T ss_pred             hhhhhhHHHHhhCCeeeEeeccccccccccHHHHHHHHHHHHHHHHHhcCcceEEeeccch-------------------
Confidence            345666666553 2323322 1111110000112235688899999999999999996543                   


Q ss_pred             cccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCC
Q 013050          198 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG  277 (450)
Q Consensus       198 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~  277 (450)
                                     ..++++.+....    +..+. +.|+.+  .+.+.++++.+.|..+++  +.....         
T Consensus       137 ---------------~~~~~il~~~~~----~~~~~-i~H~fs--G~~~~~~~~l~~g~~is~--~g~~~~---------  183 (260)
T d1j6oa_         137 ---------------SEAYEILRTESL----PEKRG-VIHAFS--SDYEWAKKFIDLGFLLGI--GGPVTY---------  183 (260)
T ss_dssp             ---------------HHHHHHHHHSCC----CSSCE-EETTCC--SCHHHHHHHHHHTEEEEE--CGGGGC---------
T ss_pred             ---------------HHHHHHHHhhcC----CCCCe-eeeccc--cCHHHHHHHHhCCCceee--cccccc---------
Confidence                           355555554311    12334 468877  566777777676754444  321110         


Q ss_pred             CCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHHH-HhcCCCHH
Q 013050          278 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLE  356 (450)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gls~~  356 (450)
                               .+....++ +.+.+... .+.+.|| .|+.......          |-..-...+......+ .-.|+|.+
T Consensus       184 ---------~~~~~~~~-~v~~iPld-rlllETD-~P~l~p~~~~----------~~~n~P~~l~~v~~~iA~~~~~~~~  241 (260)
T d1j6oa_         184 ---------PKNEALRE-VVKRVGLE-YIVLETD-CPFLPPQPFR----------GKRNEPKYLKYVVETISQVLGVPEA  241 (260)
T ss_dssp             ---------TTCHHHHH-HHHHHCGG-GEEECCC-BTSCCCGGGT----------TSCCCGGGHHHHHHHHHHHHTSCHH
T ss_pred             ---------chHHHHHH-HHHhcccc-eEEEecC-CCCCCCcccC----------CCCCChHHHHHHHHHHHHHhCcCHH
Confidence                     01111122 22223222 3568999 4543322211          1111122344444443 44689999


Q ss_pred             HHHHHHhhchhHHhCC
Q 013050          357 QLASWWSERPAKLAGQ  372 (450)
Q Consensus       357 ~al~~aT~~~A~~lg~  372 (450)
                      ++.+..+.|.-++++.
T Consensus       242 ev~~~~~~N~~rlF~~  257 (260)
T d1j6oa_         242 KVDEATTENARRIFLE  257 (260)
T ss_dssp             HHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

>d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

Probab=98.71  E-value=2.3e-09  Score=85.80  Aligned_cols=50  Identities=22%  Similarity=0.335  Sum_probs=42.1

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEE---eccceeeccccCCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVI---MPGLIDVHAHLDDPG   54 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v---~PG~iD~H~H~~~~~   54 (450)
                      ..++|+|+||||++|++.....   .+.++||++|++|   +|||||+|+|+..+.
T Consensus        19 ~~~di~i~~g~I~~ig~~~~~~---~~~~viDa~G~~V~p~~pg~~d~Hih~~~~~   71 (156)
T d2fvka1          19 YAAEIAVNNGKVQLIAASIDPS---LGSEVIDAEGAFITPILPGVSDADLVIWYPD   71 (156)
T ss_dssp             EECEEEEETTEEEEEESCCCGG---GEEEEEECTTCEEEECCTTTSBCCEEEECCS
T ss_pred             EEEEEEEECCEEEEecCCCCCC---CCCEEEECCCCEEeeecccccccceEEEeec
Confidence            4679999999999999865543   3578999999997   699999999997653

>d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.70  E-value=4.2e-09  Score=80.52  Aligned_cols=45  Identities=24%  Similarity=0.332  Sum_probs=38.6

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeecccc
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL   50 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~   50 (450)
                      +++||+|+||+|++|++..+.    ++.++||++|++|+||+||+|.|+
T Consensus        17 ~~~Di~I~~g~I~~Ig~~~~~----~~~~vida~g~~v~P~~v~~~~~~   61 (128)
T d1k1da1          17 YEAHLLIKDGKIAMIGQNLEE----KGAEVIDAKGCYVFPIVVGSDADL   61 (128)
T ss_dssp             EEEEEEECSSBEEEEESSCCC----SSCCCEECTTCEEEECSTTSBCCE
T ss_pred             EEeeEEEECCEEEEEcCCCCC----CceEEeeeCCCeEeeeecccccce
Confidence            468999999999999987653    367899999999999999777776

>d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: L-hydantoinase
species: Arthrobacter aurescens [TaxId: 43663]

Probab=98.53  E-value=2.2e-08  Score=76.06  Aligned_cols=50  Identities=20%  Similarity=0.364  Sum_probs=42.3

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccc---eeeccccCCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGL---IDVHAHLDDPG   54 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~---iD~H~H~~~~~   54 (450)
                      ..+||+|+||||++|++.....   .+.++||++|++|+||+   .|+|.|+.++.
T Consensus        18 ~~~Di~I~dgkI~~i~~~~~~~---~a~~~iDa~g~~v~P~~~vG~DAD~~l~Dp~   70 (126)
T d1gkra1          18 TEADILVKDGKVAAISADTSDV---EASRTIDAGGKFVMPTLQVGSDADLLILDLD   70 (126)
T ss_dssp             EEEEEEEETTEEEEEESCCTTC---CEEEEEECTTCEEEESCCTTSBCCEEEEESC
T ss_pred             EEEeEEEECCEEEEEcCcCCcc---cceEEeehhhcccccceeecccchhheeccc
Confidence            4579999999999999865432   35689999999999998   99999987664

>d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: D-hydantoinase
species: Thermus sp. [TaxId: 275]

Probab=98.53  E-value=2.3e-08  Score=75.42  Aligned_cols=47  Identities=19%  Similarity=0.165  Sum_probs=39.2

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeeccccC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD   51 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~   51 (450)
                      +++||+|+||+|++|+++...+   .+.++||++|++|+||..+.|.|..
T Consensus        16 ~~~Di~I~~gkI~~Ig~~l~~~---~~~~viDa~G~~v~~g~d~~~~d~~   62 (123)
T d1gkpa1          16 YKADIYAEGETITRIGQNLEAP---PGTEVIDATGKYVFPGADLVVYDPQ   62 (123)
T ss_dssp             EECEEEESSSBCCEEESCCCCC---TTCEEEECTTSEEEECCCEEEEETT
T ss_pred             EEeeEEEECCEEEEeecCCCCC---cchhhhhhccceEecCcceEEEecc
Confidence            4689999999999999876543   3679999999999999976666653

>d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Imidazolonepropionase
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.44  E-value=2.7e-09  Score=78.09  Aligned_cols=64  Identities=19%  Similarity=0.119  Sum_probs=49.1

Q ss_pred             CCHHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeE
Q 013050          353 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNL  431 (450)
Q Consensus       353 ls~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~  431 (450)
                      +.+++.+...|.++++.+++ .+.++|++||.|||+|||.+.+..+      .+...          ...++.||++||+
T Consensus        38 vG~~~~l~~~~~~aa~viDl~Grlv~i~~Gk~AD~~i~~~~~~~~l------~Y~~g----------~~~~~~v~~~G~~  101 (103)
T d2puza1          38 AGPESDLPDDLSTADETTDCGGRWITLEAGKSADFAIWDIERPAEL------VYRIG----------FNPLHARIFKGQK  101 (103)
T ss_dssp             EEETTSCCGGGSCCSEEEECTTCEEECCTTSBCCEEEECCSSTTHH------HHCBS----------CCCEEEEEETTEE
T ss_pred             cChhhhcchhhhchHhhcCCCCCEEEeeccceeeEEEEcCCCHHHH------HHhhc----------CCChhEEEECCEE
Confidence            55667777888899999999 7789999999999999997654322      22111          1368999999998


Q ss_pred             E
Q 013050          432 V  432 (450)
Q Consensus       432 v  432 (450)
                      |
T Consensus       102 v  102 (103)
T d2puza1         102 V  102 (103)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: D-aminoacylase
domain: N-acyl-D-aminoacid amidohydrolase
species: Alcaligenes faecalis [TaxId: 511]

Probab=98.24  E-value=6.5e-07  Score=56.83  Aligned_cols=36  Identities=14%  Similarity=0.179  Sum_probs=31.0

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEec
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMP   41 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~P   41 (450)
                      +.++|+|++|||++|++....    ++.++||++|++|+|
T Consensus        20 ~~~di~I~~g~I~~Ig~~~~~----~~~~vIDa~G~~v~P   55 (55)
T d1m7ja1          20 RLADVGVRGDRIAAVGDLSAS----SARRRIDVAGKVVSP   55 (55)
T ss_dssp             EECEEEEETTEEEEEECCTTS----CBSCEEECTTCEEEE
T ss_pred             eEEEEEEECCEEEEEccCCCC----CCCEEEECCCCEECC
Confidence            468999999999999986543    467999999999998

>d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Dihydropyrimidinase related protein-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=5.7e-07  Score=69.26  Aligned_cols=50  Identities=16%  Similarity=0.179  Sum_probs=42.5

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccc-eeeccccCCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGL-IDVHAHLDDPG   54 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~-iD~H~H~~~~~   54 (450)
                      ..+||+|+||+|.+|++....+   .++++||+.|++++||. .|+|.|+.++.
T Consensus        17 ~~~DilIedG~I~~Ig~~l~~~---~~a~vIDa~G~~v~~~~G~dAdl~i~Dp~   67 (142)
T d1kcxa1          17 FYADVYLEDGLIKQIGENLIVP---GGVKTIEANGRMVIIAVGSDADVVIWDPD   67 (142)
T ss_dssp             EECEEEEETTEEEEEESSCCSC---SSCEEEECTTCEEECCTTSBCCEEEEEEE
T ss_pred             EEeeEEEECCEEeEEeccCCCC---ccceeechhhcceeecccccceEEEEecc
Confidence            3579999999999999765543   36899999999999998 99999987653

>d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease {Bacillus pasteurii [TaxId: 1474]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: alpha-Subunit of urease
domain: alpha-Subunit of urease
species: Bacillus pasteurii [TaxId: 1474]

Probab=98.20  E-value=7.4e-07  Score=68.78  Aligned_cols=69  Identities=13%  Similarity=0.179  Sum_probs=53.5

Q ss_pred             CcceeEEEeCCEEEEeccCCCCCCCC---------CCCcEEecCCCEEeccceeeccccCCCCCCcccchHHHHHHHHhC
Q 013050            1 MCKRAVEIKEGNIISIVSEEDWPRNS---------KTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAG   71 (450)
Q Consensus         1 ~~~~~V~I~~g~I~~Ig~~~~~~~~~---------~~~~viD~~g~~v~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~   71 (450)
                      ++++||.|+||||+.||+..++..+.         .++++|.++|++++||-||.|.|+..-.           .+++++
T Consensus        82 i~KadiGikdG~I~giGkaGNPd~mdgV~~~~vig~~Teviageg~I~TagvIdthvHFp~qp-----------e~aLks  150 (180)
T d4ubpc1          82 IYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTALVLWEPKFFGVKA-----------DRVIKG  150 (180)
T ss_dssp             EEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEEEEEECGGGTTTSC-----------SEEEET
T ss_pred             eEEeeeeeecCEEEEeeccCCccccCCCCCCeEEcCCceEEecCCceEEEEEEeehhhcCCCH-----------HHHHhc
Confidence            46899999999999999875543221         4678999999999999999999983221           234778


Q ss_pred             CceEEEeCC
Q 013050           72 GITTLIDMP   80 (450)
Q Consensus        72 GvT~~~~~~   80 (450)
                      |+|+.-.+.
T Consensus       151 G~tt~Gp~g  159 (180)
T d4ubpc1         151 GIIAYAQIG  159 (180)
T ss_dssp             TEEEEEEEC
T ss_pred             CceeEccCC
Confidence            999886654

>d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421
species: Environmental samples

Probab=98.01  E-value=5.7e-07  Score=63.85  Aligned_cols=48  Identities=17%  Similarity=0.239  Sum_probs=34.9

Q ss_pred             hCC-CCCCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEE
Q 013050          370 AGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY  433 (450)
Q Consensus       370 lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~  433 (450)
                      ..+ .+.|+|++||.|||+|||.+.+..+      .+...          ...+..||++|++|.
T Consensus        54 ~d~~gr~~tlevGk~ADlviwd~~~~~~L------~Y~~G----------~n~i~~vi~~G~~V~  102 (103)
T d2q09a1          54 QDMKGKLVTLRVGMLADFLVWNCGHPAEL------SYLIG----------VDQLVSRVVNGEETL  102 (103)
T ss_dssp             EECTTCEEECCTTSBCCEEEESSSCTTHH------HHSCS----------CCCEEEEEETTEECC
T ss_pred             hhcccceEEecCCCccCEEEEcCCCHHHh------hhhcC----------CCCceEEEECCEEee
Confidence            345 5799999999999999997765433      22211          125889999999873

>d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.98  E-value=3.1e-06  Score=65.61  Aligned_cols=49  Identities=22%  Similarity=0.192  Sum_probs=40.7

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEecc-ceeeccccCCC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPG-LIDVHAHLDDP   53 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG-~iD~H~H~~~~   53 (450)
                      +.+||+|+||+|.+|+.+...+   .++++||+.|++++|+ ..|+|+|+.++
T Consensus        18 ~~~DIlI~~G~I~~I~~~i~~~---~~~~iida~gk~v~i~~G~dad~~i~dp   67 (150)
T d2ftwa1          18 FKSDVLVENGIIKEISKNIEPK---EGIKVVDATDKLLLIDVGCDGDIVIWDP   67 (150)
T ss_dssp             EECEEEEETTEEEEEESCCCCC---SSCCEEECTTCEEECSTTSBCCEEEEEE
T ss_pred             EEeeEEEECCEEEEEeccCCCC---CccEEEecccceeeeecCccCceEEEec
Confidence            4689999999999999876543   3789999999988665 59999999655

>d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Guanine deaminase
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=97.91  E-value=7.8e-07  Score=67.83  Aligned_cols=38  Identities=13%  Similarity=0.066  Sum_probs=30.2

Q ss_pred             HHHHHHHHhhchhHHhCC-CCCCccccCCCccEEEEeCCC
Q 013050          355 LEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEA  393 (450)
Q Consensus       355 ~~~al~~aT~~~A~~lg~-~~~G~I~~G~~ADlvv~d~~~  393 (450)
                      +.+.++.. .-+|+++++ +++|.++|||.|||||+|.+.
T Consensus        48 ~~~~l~~~-~pga~v~d~~d~lg~F~~GkEADfvVlD~~~   86 (140)
T d2ooda1          48 PYEKIAAA-HPGVEITHIKDRIIVFEPGKEADFVALDPNG   86 (140)
T ss_dssp             EHHHHHHH-STTCEEEEEEEEEEECCTTSBCCEEEECTTC
T ss_pred             CHHHHhhc-CCCceEEecCCceEeccCCCeecEEEECCCC
Confidence            34445443 447899999 889999999999999999764

>d1e9yb1 b.92.1.1 (B:1-131,B:432-480) alpha-Subunit of urease {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: alpha-Subunit of urease
domain: alpha-Subunit of urease
species: Helicobacter pylori [TaxId: 210]

Probab=97.84  E-value=1.1e-05  Score=62.21  Aligned_cols=55  Identities=15%  Similarity=0.148  Sum_probs=45.1

Q ss_pred             CcceeEEEeCCEEEEeccCCCCCCCC---------CCCcEEecCCCEEeccc----eeeccccCCCCC
Q 013050            1 MCKRAVEIKEGNIISIVSEEDWPRNS---------KTGQVVDYGEAVIMPGL----IDVHAHLDDPGR   55 (450)
Q Consensus         1 ~~~~~V~I~~g~I~~Ig~~~~~~~~~---------~~~~viD~~g~~v~PG~----iD~H~H~~~~~~   55 (450)
                      ++++||.|+||||+.||+..++..+.         ..+++|.++|+++.||-    ||.|+|+-.|..
T Consensus        81 i~kadiGikdG~I~~iGkaGnPd~mdgv~~~~iig~~Tevi~geg~I~TaGADlVlwd~h~hgIkPq~  148 (180)
T d1e9yb1          81 IYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGADLVLWSPAFFGVKPNM  148 (180)
T ss_dssp             EEEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECCCEEEECTTTTTTCCSE
T ss_pred             eEEeeeeeeCCEEEEeeccCCccccCCCCCCeEECCCceEEecCCceEecCcceEEEchhhcCCCHHH
Confidence            47899999999999999865543221         36789999999999996    999999987753

>d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Dihydropyrimidine amidohydrolase Pyd2
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

Probab=97.43  E-value=0.00012  Score=57.56  Aligned_cols=69  Identities=28%  Similarity=0.417  Sum_probs=55.7

Q ss_pred             ccC-CCccEEEEeCCCc--------eeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEecCcccCC-CCCcccc
Q 013050          379 AIG-NHADLVVWEPEAE--------FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPIL  448 (450)
Q Consensus       379 ~~G-~~ADlvv~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~-~~g~~~~  448 (450)
                      .|| -.||+.+++.+..        +++... .+..... ++||++..+.+.+..|+++|++||++|++++. ..|+||.
T Consensus        57 ~pg~~d~Hih~~~~~~~~~~~~~~~~tIs~~-~~~~~~~-~t~~eg~~~~G~~~~ti~rG~~v~~~g~~~~~~g~G~fi~  134 (156)
T d2fvka1          57 LPGVSDADLVIWYPDDSKKEYNSKPKLITNK-LMEHNCD-YTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYLK  134 (156)
T ss_dssp             CTTTSBCCEEEECCSSCCCCCTTSCSBCCTG-GGCSSSS-CCTTTTCBCSCCEEEEEETTEEEEETTEECGGGCCCCBCC
T ss_pred             cccccccceEEEeeccccccccccceEEehh-hcccccc-cccceeEEEccceEEEEECCEEEEECCEEEecCCCCcccC
Confidence            567 7999999987742        334444 5555565 89999999999999999999999999999966 6899986


Q ss_pred             c
Q 013050          449 A  449 (450)
Q Consensus       449 ~  449 (450)
                      +
T Consensus       135 R  135 (156)
T d2fvka1         135 R  135 (156)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d2uz9a1 b.92.1.4 (A:8-75,A:389-451) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Guanine deaminase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=1.3e-05  Score=60.62  Aligned_cols=62  Identities=10%  Similarity=-0.081  Sum_probs=37.0

Q ss_pred             hCCCCCCccccCCCccEEEEeCCCceeeC-CCCCc--ccCCCCccccCCceE---eeEEEEEEECCeEEE
Q 013050          370 AGQVSKGAIAIGNHADLVVWEPEAEFELD-NDHPV--HMKHPSISAYLGRRL---SGKVLATISRGNLVY  433 (450)
Q Consensus       370 lg~~~~G~I~~G~~ADlvv~d~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~---~~~v~~v~v~G~~v~  433 (450)
                      |..++.|.+++||.||++++|.+...... .. ..  ..... ..++...++   .++|..|||+|+.|+
T Consensus        61 l~~~~~g~FevGkeaD~ivID~~~~~~~~~~~-~~~~~~~~~-~~~l~~lv~~gddr~I~~v~V~G~~Vv  128 (131)
T d2uz9a1          61 LSHHEFFMFEVGKEFDAILINPKASDSPIDLF-YGDFFGDIS-EAVIQKFLYLGDDRNIEEVYVGGKQVV  128 (131)
T ss_dssp             CCTTCEEECCTTSBCCEEEECTTCTTCSCCCC-THHHHSSST-THHHHHHHHHCCGGGEEEEEETTEEEE
T ss_pred             hhhccccccccCccccEEEEECCCccchhhhh-ccccccCcH-HHHHHHHhhcCCCCcEeEEEECCEEeC
Confidence            44468999999999999999987521100 00 00  00001 122222222   247999999999986

>d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Imidazolonepropionase
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.88  E-value=0.00043  Score=49.70  Aligned_cols=50  Identities=16%  Similarity=0.156  Sum_probs=41.4

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCC-CCCcEEecCCCEEeccceeeccccC
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNS-KTGQVVDYGEAVIMPGLIDVHAHLD   51 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~-~~~~viD~~g~~v~PG~iD~H~H~~   51 (450)
                      +++.|+|++|||.+||+..+.+... ...+++|++|+++.+..-..+.++-
T Consensus        24 e~aAl~v~~g~I~~vG~~~~l~~~~~~aa~viDl~Grlv~i~~Gk~AD~~i   74 (103)
T d2puza1          24 ENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITLEAGKSADFAI   74 (103)
T ss_dssp             EEEEEEEETTEEEEEEETTSCCGGGSCCSEEEECTTCEEECCTTSBCCEEE
T ss_pred             HHHHHHhhCCCccccChhhhcchhhhchHhhcCCCCCEEEeeccceeeEEE
Confidence            5789999999999999988765432 3578999999999998888887764

>d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=96.82  E-value=0.093  Score=45.83  Aligned_cols=111  Identities=12%  Similarity=0.008  Sum_probs=64.1

Q ss_pred             HHHHHHHHhCCceEEEeCCC-CCCCCCCcHHHHHH-------HHHHHhcCCceEEEEeccccCCC-ccchHHHHHHHHcC
Q 013050           62 PSGTKAAAAGGITTLIDMPL-NSDPSTISTETLKL-------KVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLNAG  132 (450)
Q Consensus        62 ~~~~~~~~~~GvT~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g  132 (450)
                      ......+-++||...+..+. .........+....       ........-+-++...+.+.... ....++++++.+.|
T Consensus        59 ~~~l~~Md~~gid~av~~~~~~~~~~~~~~~~~~~~~~~~Nd~~~~~~~~~p~R~~~~~~v~~~~~~~a~~el~r~~~~g  138 (331)
T d2hbva1          59 AFRIEEMDAQGVDVQVTCATPVMFGYTWEANKAAQWAERMNDFALEFAAHNPQRIKVLAQVPLQDLDLACKEASRAVAAG  138 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEEECGGGCCTTSCHHHHHHHHHHHHHHHHHHHTTCTTTEEECBCCCTTSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCEEEEeccccccccccchhhhhhHHHHhhHHHHHHHhhccCcceeeeEeecccchhhhhHHHHhhhhc
Confidence            34456677899988765430 01111111222111       11111122233344444343333 24467788888899


Q ss_pred             CcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 013050          133 VLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM  176 (450)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~  176 (450)
                      ..+++......+    ...+...+..+++.+.++|++|.+|...
T Consensus       139 ~~g~~l~~~~~~----~~~~d~~~~p~~~~~~e~~~pv~iH~~~  178 (331)
T d2hbva1         139 HLGIQIGNHLGD----KDLDDATLEAFLTHCANEDIPILVHPWD  178 (331)
T ss_dssp             CCCEEEESCBTT----BCTTSHHHHHHHHHHHHTTCCEEEECCS
T ss_pred             ceeeeecccccC----cccccchhhHHHHHHhccCCceEEecCC
Confidence            999988643322    2456788999999999999999999844

>d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: Thermophilic reversible gamma-resorcylate decarboxylase
species: Rhizobium sp. MTP-10005 [TaxId: 267998]

Probab=96.79  E-value=0.11  Score=45.41  Aligned_cols=135  Identities=14%  Similarity=0.142  Sum_probs=73.2

Q ss_pred             eccceeeccccCCCC----------CCcccc-------h-HHHHHHHHhCCceEEEeCCCCCC--CCCCcHHHHHHH---
Q 013050           40 MPGLIDVHAHLDDPG----------RTEWEG-------F-PSGTKAAAAGGITTLIDMPLNSD--PSTISTETLKLK---   96 (450)
Q Consensus        40 ~PG~iD~H~H~~~~~----------~~~~~~-------~-~~~~~~~~~~GvT~~~~~~~~~~--~~~~~~~~~~~~---   96 (450)
                      |||-||+|.|+..+.          ...+..       + ....+.+-+.||...+-.+ ...  ............   
T Consensus         1 ~~~~i~~~~h~~~p~~~~~~~~~~~~~~~~~~~~~~~d~~~~rl~~MD~~GId~avl~~-~~~~~~~~~~~~~~~~~ar~   79 (325)
T d2dvta1           1 MQGKVALEEHFAIPETLQDSAGFVPGDYWKELQHRLLDIQDTRLKLMDAHGIETMILSL-NAPAVQAIPDRRKAIEIARR   79 (325)
T ss_dssp             CCSEEEEEEEECCHHHHGGGTTTSCSSHHHHHHHHHHCSSSHHHHHHHHTTEEEEEEEE-CSSGGGGCCCHHHHHHHHHH
T ss_pred             CCCeEEEEeccCCcchhhhhccCCCccchHHHHhhcCCchHHHHHHHHHCCCcEEEEec-CchHhcccCChHHHHHHHHH
Confidence            789999999995431          111100       1 2234567788998766432 110  011222222111   


Q ss_pred             -----HHHHhcCCceEEEEeccccCCC-ccchHHHHHHHH-cCCcEEEEecccCCCC--CCCCCCHHHHHHHHHHHHhcC
Q 013050           97 -----VDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLN-AGVLGLKSFMCPSGIN--DFPMTNASHIKEGLSVLARYK  167 (450)
Q Consensus        97 -----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~g~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~a~~~g  167 (450)
                           .+... .-+-++...+.+.... ....+++++.++ .|..+++....+....  ..+..+.+.+..+.+.+.++|
T Consensus        80 ~Nd~l~~~~~-~~P~Rf~~~~~v~~~~~~~a~~el~r~~~~~g~~Gv~l~~~~~~~~~~~~~~~~d~~~~pi~~~~~e~~  158 (325)
T d2dvta1          80 ANDVLAEECA-KRPDRFLAFAALPLQDPDAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLD  158 (325)
T ss_dssp             HHHHHHHHHH-HCTTTEEEEECCCTTSHHHHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHHT
T ss_pred             HHHHHHHHhc-cCCCeEEEEEEccccccchhhhhhhhhhhcccceEEEEeCCCcCCCCCCcccccCcccchHHHHHhhCC
Confidence                 11111 2222333333333333 234567777665 5888998864333211  113456678889999999999


Q ss_pred             CcEEEecCC
Q 013050          168 RPLLVHAEM  176 (450)
Q Consensus       168 ~~v~~H~~~  176 (450)
                      ++|.+|...
T Consensus       159 lpv~iH~~~  167 (325)
T d2dvta1         159 VPFYLHPRN  167 (325)
T ss_dssp             CCEEEECCC
T ss_pred             ceEEEecCC
Confidence            999999854

>d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Adenosine/AMP deaminase
domain: Adenosine deaminase (ADA)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.031  Score=49.64  Aligned_cols=168  Identities=14%  Similarity=0.064  Sum_probs=92.6

Q ss_pred             ccchHHHHHHHH---cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccc
Q 013050          119 AYNASALEALLN---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS  195 (450)
Q Consensus       119 ~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~  195 (450)
                      ....+.+....+   .++.|+.......   ..+......+.++++.|++.|+++.+|+.+...                
T Consensus       157 ~~~~e~~~~~~~~~~~~vvGidl~G~E~---~~~~~~~~~~~~~f~~ar~~gl~~t~HaGE~~~----------------  217 (349)
T d1a4ma_         157 SWSLEVLELCKKYNQKTVVAMDLAGDET---IEGSSLFPGHVEAYEGAVKNGIHRTVHAGEVGS----------------  217 (349)
T ss_dssp             GGHHHHHHHHHHTBTTTEEEEEEESCTT---STTGGGCHHHHHHHHHHHHHTCEEEEEESSSSC----------------
T ss_pred             hhHHHHHHHHHHhcccccccceecCccC---CCChhhHHHHHHHHHHHHHcCCceeeccCCCCC----------------
Confidence            334444444443   4566766532111   111222345778899999999999999954321                


Q ss_pred             cccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEEEEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccC
Q 013050          196 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP  275 (450)
Q Consensus       196 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~  275 (450)
                                   .+.+..++..+.           .-++.|.....+..+.++.+++.++.+.  +||........   
T Consensus       218 -------------~~~i~~ai~~l~-----------~~RIGHG~~l~~d~~l~~~~~~~~I~lE--vCptSN~~~~~---  268 (349)
T d1a4ma_         218 -------------PEVVREAVDILK-----------TERVGHGYHTIEDEALYNRLLKENMHFE--VCPWSSYLTGA---  268 (349)
T ss_dssp             -------------HHHHHHHHHTSC-----------CSEEEECGGGGGSHHHHHHHHHTTCEEE--ECHHHHHHSSS---
T ss_pred             -------------hHHHHHHHHHhC-----------CcccCCceecccCHHHHHHhhhcCceEE--Ecccccccccc---
Confidence                         122333333222           1244566543356677788888876554  48876544311   


Q ss_pred             CCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCCCChhhhcccCCCccccCCCCcchhhHHHHHHHH-HHhcCCC
Q 013050          276 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVT  354 (450)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~gls  354 (450)
                              .+++.    ...+...++.|++++++||....                   .+.  .+...+.. ....+++
T Consensus       269 --------~~~~~----~HP~~~~~~~gv~v~i~TDDp~~-------------------f~t--~Ls~Ey~~a~~~~~l~  315 (349)
T d1a4ma_         269 --------WDPKT----THAVVRFKNDKANYSLNTDDPLI-------------------FKS--TLDTDYQMTKKDMGFT  315 (349)
T ss_dssp             --------SCTTS----CCHHHHHHHTTCCEEECCBCTTT-------------------TTC--CHHHHHHHHHHTTTCC
T ss_pred             --------cCchh----hHHHHHHHHCCCeEEEeCCCccc-------------------cCC--CHHHHHHHHHHHhCcC
Confidence                    11111    22356778899999999995422                   111  13333333 4567999


Q ss_pred             HHHHHHHHhhchhH
Q 013050          355 LEQLASWWSERPAK  368 (450)
Q Consensus       355 ~~~al~~aT~~~A~  368 (450)
                      .+++.++ ..|+-+
T Consensus       316 ~~~l~~l-~~nsi~  328 (349)
T d1a4ma_         316 EEEFKRL-NINAAK  328 (349)
T ss_dssp             HHHHHHH-HHHHHH
T ss_pred             HHHHHHH-HHHHHH
Confidence            9886544 444443

>d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Adenine deaminase
domain: Putative adenine deaminase EF0837
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.66  E-value=0.00028  Score=49.53  Aligned_cols=61  Identities=21%  Similarity=0.251  Sum_probs=39.6

Q ss_pred             HhhchhHHhCC-CC---CCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEe----eEEEEEEECCeEEE
Q 013050          362 WSERPAKLAGQ-VS---KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS----GKVLATISRGNLVY  433 (450)
Q Consensus       362 aT~~~A~~lg~-~~---~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~v~v~G~~v~  433 (450)
                      .|..+++.+.| +.   .|+|++|+.||+.||+.......-     ....       |....    -.+..++++|+ +|
T Consensus        33 ~~~~a~~~~~L~~~~y~sGtL~vG~~ADiTIf~l~~g~~~~-----~Ds~-------G~~~~g~~~L~P~~tI~~G~-vy   99 (101)
T d2icsa1          33 ISGSAKETIHLEPGTYVSATLEIGKDADLTIFTIQAEEKTL-----TDSN-------GLTRVAKEQIRPIKTIIGGQ-IY   99 (101)
T ss_dssp             CCCCEEEEEECCTTCEEEESCCTTSBCCEEEEEEEEEEEEE-----ECTT-------SCEEEEEEEEEEEEEEETTE-EE
T ss_pred             ccccchheEecCCceeeeeEecCCCeeeEEEEEEecCceEE-----EeCC-------CCEEEeeEEEeEEEEEECCE-Ee
Confidence            35678888888 42   599999999999999965422111     1111       12221    24789999998 66


Q ss_pred             ec
Q 013050          434 KE  435 (450)
Q Consensus       434 ~~  435 (450)
                      ++
T Consensus       100 d~  101 (101)
T d2icsa1         100 DN  101 (101)
T ss_dssp             EC
T ss_pred             cC
Confidence            53

>d2ffia1 c.1.9.15 (A:10-280) Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699
species: Pseudomonas putida [TaxId: 303]

Probab=96.55  E-value=0.059  Score=44.94  Aligned_cols=123  Identities=15%  Similarity=0.074  Sum_probs=63.7

Q ss_pred             ceeeccccCCCC----------CCcccchHHHHHHHHhCCceEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCceEEEEec
Q 013050           43 LIDVHAHLDDPG----------RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG  112 (450)
Q Consensus        43 ~iD~H~H~~~~~----------~~~~~~~~~~~~~~~~~GvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (450)
                      -||+|+|+....          ...........+.+..+||+..+-+...... ... +......+..... .   ...+
T Consensus         5 ~ID~H~Hl~~~~~~~~~~~~~~~~~~~~~e~ll~~m~~~gI~~~vl~~~~~~~-~~n-~~~~~~~~~~~~~-~---~~~~   78 (271)
T d2ffia1           5 AIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFLG-TDN-RYLLSALQTVPGQ-L---RGVV   78 (271)
T ss_dssp             CEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHHTSCCEECCBCCGGGT-TCC-HHHHHHHHHSTTT-B---CCBB
T ss_pred             EEeeeecccCCccccccccCCCCCCCCCHHHHHHHHHHcCCCEEEEECCCccc-chh-HHHHHHHHhhcCc-e---EEEE
Confidence            489999983210          0111235666778889999987654201111 111 1222222211111 1   1111


Q ss_pred             cccCCCccchHHHHHHHHcCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 013050          113 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM  176 (450)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~  176 (450)
                      .+...  ...+...++...+..++........   .............+.+.+++.++..|...
T Consensus        79 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (271)
T d2ffia1          79 MLERD--VEQATLAEMARLGVRGVRLNLMGQD---MPDLTGAQWRPLLERIGEQGWHVELHRQV  137 (271)
T ss_dssp             CCCSS--CCHHHHHHHHTTTCCEEECCCSSSC---CCCTTSTTTHHHHHHHHHHTCEEEECSCT
T ss_pred             EEecc--cchHHHHHHHHhhhccceecccccc---CCCcccHhHHHHHHHHHHhCCCcccccCc
Confidence            11111  2234455666677767665432221   12345566778888899999999999843

>d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Hydantoinase (dihydropyrimidinase)
domain: Two-domain dihydroorotase
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.51  E-value=0.0012  Score=48.09  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=31.7

Q ss_pred             ceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccc
Q 013050            3 KRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGL   43 (450)
Q Consensus         3 ~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~   43 (450)
                      ..+|+|++|+|++|++....    +.++++|+.|+++.||+
T Consensus        21 ~~DllI~~GkI~~I~~~i~~----~~a~viD~~g~~~~~~l   57 (112)
T d1xrta1          21 EFDILVENGKIKKIDKNILV----PEAEIIDAKGLIVCPTL   57 (112)
T ss_dssp             ECEEEEETTEEEEEESSCCC----SSEEEEECTTSEEEECC
T ss_pred             eeeEEEECCEEEEeecCCCc----ccceEEehhccccccee
Confidence            46899999999999976543    35789999999999997

>d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: N-acetylglucosamine-6-phosphate deacetylase, NagA
domain: N-acetylglucosamine-6-phosphate deacetylase, NagA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.32  E-value=0.0019  Score=40.41  Aligned_cols=37  Identities=30%  Similarity=0.451  Sum_probs=29.6

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEeccceeecccc
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL   50 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~   50 (450)
                      +.|+|-+++|+|..|-...-.+            ..++||||+|-|.|-
T Consensus        16 yTGdvEf~e~kI~~I~k~ectp------------~~ilMP~f~dg~~a~   52 (76)
T d1o12a1          16 FTGDVEIEEGKIVKVEKRECIP------------RGVLMPRIAEGTRAD   52 (76)
T ss_dssp             EEEEEEEETTEEEEEEECCSCC------------SSEEEECCSTTSBCC
T ss_pred             EeeeEEecCcEEEEEEEeccCC------------CeEEcccccCCcccc
Confidence            4689999999999998754321            368999999999984

>d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961 {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: Putative amidohydrolase LP2961
species: Lactobacillus plantarum [TaxId: 1590]

Probab=96.26  E-value=0.092  Score=45.39  Aligned_cols=53  Identities=13%  Similarity=0.199  Sum_probs=38.9

Q ss_pred             cchHHHHHHHH-cCCcEEEEecccCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEecCC
Q 013050          120 YNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM  176 (450)
Q Consensus       120 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~  176 (450)
                      ...+++++.++ .|+.|++......+.    ..+.+.+..+.+.|.++|++|.+|...
T Consensus       103 ~a~~el~r~~~~~G~~Gi~~~~~~~~~----~~~dp~~~pi~~~~~e~~lpv~~H~~~  156 (306)
T d2f6ka1         103 DAVKTVQQALDQDGALGVTVPTNSRGL----YFGSPVLERVYQELDARQAIVALHPNE  156 (306)
T ss_dssp             HHHHHHHHHHHTSCCSEEEEESEETTE----ETTCGGGHHHHHHHHTTTCEEEEECCC
T ss_pred             HHHHHHHHHHhcccceEEEecCccccc----cCCCccchHHHHHHHHcCCceEeccCC
Confidence            34566777665 599999876443321    245567889999999999999999743

>d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Imidazolonepropionase-like
domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421
species: Environmental samples

Probab=95.69  E-value=0.0054  Score=42.98  Aligned_cols=39  Identities=18%  Similarity=0.262  Sum_probs=30.7

Q ss_pred             CcceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEe
Q 013050            1 MCKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIM   40 (450)
Q Consensus         1 ~~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~   40 (450)
                      ++++.|+|++|+|..|++..+.+..+ ...+.|++|+++.
T Consensus        24 ie~~ai~v~~g~I~~vgp~~~lpa~~-~~~~~d~~gr~~t   62 (103)
T d2q09a1          24 LEPHALGVHEGRIHALVPMQDLKGPY-PAHWQDMKGKLVT   62 (103)
T ss_dssp             CSSEEEEEETTEEEEEEEGGGCC--C-CTTSEECTTCEEE
T ss_pred             eccceEEEeCCeEEEEEehhhCCccc-cchhhhcccceEE
Confidence            46799999999999999988876433 3567899999754

>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Adenosine/AMP deaminase
domain: Adenosine deaminase (ADA)
species: Plasmodium yoelii [TaxId: 5861]

Probab=95.35  E-value=0.032  Score=49.63  Aligned_cols=139  Identities=15%  Similarity=0.097  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHhcCCcEEEecCChhhhhhhhhhccCcCCccccccccCCCChHHHHHHHHHHHHHHHhhccCCCCCCceEE
Q 013050          155 HIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLH  234 (450)
Q Consensus       155 ~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  234 (450)
                      .+..+++.|++.|+++.+|+.+...          .             +   ....+..++..+.          . -.
T Consensus       202 ~~~~~f~~ar~~gl~it~HaGE~~~----------~-------------~---~~~~i~~ai~~l~----------~-~R  244 (357)
T d2amxa1         202 DHKDVYHSVRDHGLHLTVHAGEDAT----------L-------------P---NLNTLYTAINILN----------V-ER  244 (357)
T ss_dssp             GGHHHHHHHHHTTCEEEEEESCCTT----------C-------------S---SSHHHHHHHHTSC----------C-SE
T ss_pred             hhHHHHHHHHhcCCcccccccccCC----------C-------------C---ChHHHHHHHHccC----------C-cc
Confidence            3677899999999999999955321          0             0   0111233332221          1 23


Q ss_pred             EEecCChhHHHHHHHHHHhCCCcEEEecCcchhcccccccCCCCCceEEcCCCCChhhHHHHHHHHhcCCeeEEcCCCCC
Q 013050          235 IVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP  314 (450)
Q Consensus       235 ~~h~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~gtD~~~  314 (450)
                      +.|........+.++.++++++.+  ++||........           .+.+.    ..++...++.|++++++||...
T Consensus       245 IgHGv~~~~d~~l~~~l~~~~I~l--eiCPtSN~~~~~-----------~~~~~----~HP~~~l~~~Gv~v~l~TDDp~  307 (357)
T d2amxa1         245 IGHGIRVSESDELIELVKKKDILL--EVCPISNLLLNN-----------VKSMD----THPIRKLYDAGVKVSVNSDDPG  307 (357)
T ss_dssp             EEECGGGGGCHHHHHHHHHHTCEE--EECHHHHHHTTS-----------SSCST----TCTHHHHHHTTCEEEECCBCHH
T ss_pred             cccchheecCHHHHHHHHHhCceE--EECCcchhhhcc-----------CCCcc----cCHHHHHHHCCCeEEEeCCCch
Confidence            566654324556667777777655  458876544311           11111    1235677889999999999531


Q ss_pred             CChhhhcccCCCccccCCCCcchhhHHHHHHH-HHHhcCCCHHHHHHHHhhchhHH
Q 013050          315 TVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKL  369 (450)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~gls~~~al~~aT~~~A~~  369 (450)
                      .                   .+  ..+...+. .....++|.+++.+ .+.|+-++
T Consensus       308 ~-------------------f~--t~ls~ey~~~~~~~~ls~~el~~-l~~nsi~~  341 (357)
T d2amxa1         308 M-------------------FL--SNINDNYEKLYIHLNFTLEEFMI-MNNWAFEK  341 (357)
T ss_dssp             H-------------------HT--CCHHHHHHHHHHHHCCCHHHHHH-HHHHHHHH
T ss_pred             h-------------------hC--CCHHHHHHHHHHHcCCCHHHHHH-HHHHHHHH
Confidence            1                   00  01222222 34567999999554 55555543

>d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: N-acetylglucosamine-6-phosphate deacetylase, NagA
domain: N-acetylglucosamine-6-phosphate deacetylase, NagA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.67  E-value=0.028  Score=35.04  Aligned_cols=32  Identities=38%  Similarity=0.658  Sum_probs=27.3

Q ss_pred             ccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEEEec
Q 013050          377 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE  435 (450)
Q Consensus       377 ~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v~~~  435 (450)
                      .+..|+.||||++|-|.                           +|.+|+..|++||+.
T Consensus        44 ~f~dg~~a~~Vlld~~l---------------------------~v~~tv~~g~~v~~~   75 (76)
T d1o12a1          44 RIAEGTRADLVLLDEDL---------------------------NVVMTIKEGEVVFRS   75 (76)
T ss_dssp             CCSTTSBCCEEEECTTC---------------------------CEEEEEETTEEEEEC
T ss_pred             cccCCccccEEEEcCCc---------------------------eEEEEEeeccEEEec
Confidence            57789999999999553                           788999999999974

>d1ra0a1 b.92.1.2 (A:4-55,A:376-426) Cytosine deaminase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Cytosine deaminase
domain: Cytosine deaminase
species: Escherichia coli [TaxId: 562]

Probab=94.66  E-value=0.022  Score=39.72  Aligned_cols=35  Identities=17%  Similarity=0.376  Sum_probs=28.8

Q ss_pred             eEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEEec
Q 013050            5 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMP   41 (450)
Q Consensus         5 ~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v~P   41 (450)
                      +|.|+||+|.+|.+..+...  .....+|++|.++.|
T Consensus        18 ~I~I~~G~i~~I~pq~~~~~--~~~d~lDa~GgL~~p   52 (103)
T d1ra0a1          18 QIHLQDGKISAIDAQSGVMP--ITENSLDAEQGLVIP   52 (103)
T ss_dssp             EEEEETTEEEEEEEESSCCC--CCTTEEECTTCEEES
T ss_pred             EEEecCCEEeeeecCCcccc--CCCcceeccCCcccC
Confidence            58999999999998765321  356789999999999

>d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: SAH/MTA deaminase-like
domain: Guanine deaminase
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=91.32  E-value=0.013  Score=43.97  Aligned_cols=38  Identities=11%  Similarity=0.120  Sum_probs=30.0

Q ss_pred             cceeEEEeCCEEEEeccCCCCCCCCCCCcEEecCCCEE
Q 013050            2 CKRAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVI   39 (450)
Q Consensus         2 ~~~~V~I~~g~I~~Ig~~~~~~~~~~~~~viD~~g~~v   39 (450)
                      .+|-++|++|+|+++|+..+.....++++++|++++++
T Consensus        32 ~DG~llie~G~I~a~G~~~~l~~~~pga~v~d~~d~lg   69 (140)
T d2ooda1          32 QDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRII   69 (140)
T ss_dssp             EEEEEEEESSBEEEEEEHHHHHHHSTTCEEEEEEEEEE
T ss_pred             cCcEEEEeCCEEEEecCHHHHhhcCCCceEEecCCceE
Confidence            46889999999999998765443356889999888764

>d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]}

class: All beta proteins
fold: Composite domain of metallo-dependent hydrolases
superfamily: Composite domain of metallo-dependent hydrolases
family: Zn-dependent arginine carboxypeptidase-like
domain: Xaa-Pro dipeptidase
species: Alteromonas macleodii [TaxId: 28108]

Probab=91.12  E-value=0.064  Score=37.28  Aligned_cols=39  Identities=23%  Similarity=0.222  Sum_probs=29.2

Q ss_pred             CCccccCCCccEEEEeCCCceeeCCCCCcccCCCCccccCCceEeeEEEEEEECCeEE
Q 013050          375 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV  432 (450)
Q Consensus       375 ~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~v~G~~v  432 (450)
                      +..|++|+.||+++++.||..++                   ....++..|+.+|++.
T Consensus        56 ~PGL~~g~~~d~~~~~~~P~~di-------------------~~~~~v~~v~~~G~~~   94 (96)
T d2qs8a1          56 LPSIESGKLADLIAVKGNPIEDI-------------------SVLENVDVVIKDGLLY   94 (96)
T ss_dssp             EESCCTTSBCCEEEESSCTTTCG-------------------GGGGGEEEEEETTEEE
T ss_pred             ccCccccCcccEEEEcCChhHHh-------------------HhhcCccEEEECCEEe
Confidence            46799999999999998864332                   1123688999999764

>d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: PP1699/LP2961-like
domain: 4-oxalomesaconate hydratase LigJ
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=89.65  E-value=0.58  Score=40.51  Aligned_cols=58  Identities=16%  Similarity=0.150  Sum_probs=39.8

Q ss_pred             cchHHHHHHH-HcCCcEEEEecccCCCC-CCCCCCHHHHHHHHHHHHhcCCcEEEecCCh
Q 013050          120 YNASALEALL-NAGVLGLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEME  177 (450)
Q Consensus       120 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~  177 (450)
                      ...+++...+ +.|..+++......+.. ..+..+.+.+..+.+.+.++|++|.+|....
T Consensus       123 ~a~~e~~~~~~~~~~~gi~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~glpv~~H~~~~  182 (342)
T d2gwga1         123 TCIPELEKCVKEYGFVAINLNPDPSGGHWTSPPLTDRIWYPIYEKMVELEIPAMIHVSTS  182 (342)
T ss_dssp             GGHHHHHHHHHTSCCCEEEECSCTTSSCCCSCCTTSGGGHHHHHHHHHHTCCEEECCCC-
T ss_pred             HHHHHHhhhHhhccceEEEEeccccccccCCCCCCCHHHHHHHHHhhcCCCeEEEccCCC
Confidence            3445555554 57888998865433211 2234677889999999999999999999543